Citrus Sinensis ID: 005641

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680------
MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLKSFAGICTSLLDVFVAPSSGTSR
cccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccHHccccccccccccccccHHHHccHHHHHHccccccccccHHHHHHccccHHHHcHHHHHHcccccccccccccccHHHHHcccccccccHHccEEccHcHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
MASWLKAAEDLFEVVDRRAKLVVNELAdeqsdfqtpasngqgsqAKKIKSRIKAQRRHSADESLKINDTAREQantqaspvdvtpnkdtATLAVEKEtittgktqkngeqqqtnerdapsiplteqskdmskhdadrveipetftdldtatpngeilnendsdvhlnhppsplppkemgivnedriddagqitksadadaplkidskiqavdppvnsesslkdaDVKVETLSNKRKQqalkaddpptkeqdQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKrgqkkspeEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERsrvsrrswssweedaemksleplplhhrhIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLKSFAGICTSLLDvfvapssgtsr
MASWLKAAEDLFEVVDRRAKLVVNELadeqsdfqtpasngqgsqakKIKSRIKAqrrhsadeslkindtareqantqaspvdvtpnkdTATLAVEketittgktqkngeqqqtnerdapsiplteqskdmskhdaDRVEIPetftdldtatpNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKsadadaplkidskiqavdppvnsesslkdaDVKVETLSNKrkqqalkaddpptkeqDQLDEAQGLLKTtistgqskeaRLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEEraahnatkmaAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKrdaehysreeHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLqevqseaersrvsrrswssweeDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLKSFAGICTSLLDvfvapssgtsr
MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQalreelasverraeeeraaHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQevqseaersrvsrrswssweedaeMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLKSFAGICTSLLDVFVAPSSGTSR
****LKAAEDLFEVVDRRAKLVVN************************************************************************************************************************************************************************************************************************************************************VCA********************************************************************************************************************************************************************************AMLEVECA**************************************************************************************YRELTDLLYYKQT**********************************************************HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLKSFAGICTSLLDVFVA*******
***WLK**ED*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KLLDSGAVRATRFLWRYPIARIILLFYLKSFAGICTSLLDVF**P******
MASWLKAAEDLFEVVDRRAKLVVNELADEQS*******************************SLKINDTAR************TPNKDTATLAVEKETITTG***************APSIPLT**********ADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAV***********DADVKVETLSN********************DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA*****************QMQAW*****************LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR*************************EMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLKSFAGICTSLLDVFV********
***WLKAAEDLFEVVDRRAKLVVNEL***********************************************************************************************************************************************************N*DRIDDAGQITKS**A*A*LKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVS**************SLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLKSFAGICTSLLDVFVAP******
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MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMxxxxxxxxxxxxxxxxxxxxxHNATKMAAMEREVELEHRAAEASMALARIQRIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSPEEANQAIQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEHMELEKRYRELTDLLYYKQTQLETMASExxxxxxxxxxxxxxxxxxxxxxxxxxxxRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLKSFAGICTSLLDVFVAPSSGTSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query686 2.2.26 [Sep-21-2011]
Q8S8N9707 Golgin candidate 1 OS=Ara yes no 0.941 0.913 0.607 0.0
Q5JLY8709 Golgin-84 OS=Oryza sativa yes no 0.653 0.631 0.725 0.0
Q6GNT7722 Golgin subfamily A member N/A no 0.565 0.537 0.282 8e-15
Q9QYE6729 Golgin subfamily A member yes no 0.492 0.463 0.263 2e-11
Q8TBA6731 Golgin subfamily A member yes no 0.505 0.474 0.264 4e-11
Q3ZU82728 Golgin subfamily A member yes no 0.268 0.252 0.292 1e-10
Q7SXE4760 Golgin subfamily A member yes no 0.202 0.182 0.297 6e-09
B0F9L7668 Golgin candidate 2 OS=Ara no no 0.374 0.384 0.263 1e-08
Q8SZ63516 Golgin-84 OS=Drosophila m yes no 0.166 0.220 0.285 0.0004
>sp|Q8S8N9|GOGC1_ARATH Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2 Back     alignment and function desciption
 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/691 (60%), Positives = 510/691 (73%), Gaps = 45/691 (6%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+   +++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSK---KKKLVK 57

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 58  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 114

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 115 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 165

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 166 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 223

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 224 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 283

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 284 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 343

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 344 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 403

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 404 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 463

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ+QAWQDEV+RARQGQRDAE 
Sbjct: 464 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 523

Query: 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 524 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 583

Query: 573 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQ 632
           AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LEPLPL+HRH+A AS QLQ
Sbjct: 584 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLEPLPLYHRHMATASTQLQ 643

Query: 633 KAAKLLDSGAVRATRFLWRYPIARIILLFYL 663
            A KLLDSGAVRATRFLWRYPIAR+ LLFYL
Sbjct: 644 NAVKLLDSGAVRATRFLWRYPIARMFLLFYL 674
Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g0744400 PE=2 SV=1 Back     alignment and function description
>sp|Q6GNT7|GOGA5_XENLA Golgin subfamily A member 5 OS=Xenopus laevis GN=golga5 PE=2 SV=1 Back     alignment and function description
>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus GN=Golga5 PE=1 SV=2 Back     alignment and function description
>sp|Q8TBA6|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapiens GN=GOLGA5 PE=1 SV=3 Back     alignment and function description
>sp|Q3ZU82|GOGA5_RAT Golgin subfamily A member 5 OS=Rattus norvegicus GN=Golga5 PE=1 SV=1 Back     alignment and function description
>sp|Q7SXE4|GOGA5_DANRE Golgin subfamily A member 5 OS=Danio rerio GN=golga5 PE=2 SV=1 Back     alignment and function description
>sp|B0F9L7|GOGC2_ARATH Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1 Back     alignment and function description
>sp|Q8SZ63|GOGA5_DROME Golgin-84 OS=Drosophila melanogaster GN=Golgin84 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query686
255546349717 Golgin-84, putative [Ricinus communis] g 0.981 0.938 0.704 0.0
297738766712 unnamed protein product [Vitis vinifera] 0.965 0.929 0.687 0.0
356560629702 PREDICTED: golgin candidate 1-like [Glyc 0.948 0.927 0.668 0.0
225445112694 PREDICTED: golgin candidate 1-like [Viti 0.941 0.930 0.673 0.0
356497595703 PREDICTED: golgin candidate 1-like [Glyc 0.953 0.930 0.675 0.0
449466268709 PREDICTED: golgin candidate 1-like [Cucu 0.959 0.928 0.643 0.0
334184316710 golgin candidate 1 [Arabidopsis thaliana 0.946 0.914 0.610 0.0
164708702710 putative golgin-84-like protein [Arabido 0.946 0.914 0.609 0.0
79557632707 golgin candidate 1 [Arabidopsis thaliana 0.941 0.913 0.607 0.0
297832160746 hypothetical protein ARALYDRAFT_899882 [ 0.935 0.860 0.608 0.0
>gi|255546349|ref|XP_002514234.1| Golgin-84, putative [Ricinus communis] gi|223546690|gb|EEF48188.1| Golgin-84, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/691 (70%), Positives = 550/691 (79%), Gaps = 18/691 (2%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAKLVV+ELADE SD Q+PASNGQGSQ K  + + KAQ+R S 
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELADEHSDSQSPASNGQGSQPKTARGKKKAQKRLSK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKT--QKNGEQQQTNERDA 118
            ES K +    E   TQ S +++  ++D A L+VE +T  T K+  Q   EQQQ  ++DA
Sbjct: 61  IESDKASSAKAEFITTQTSQLEME-SEDRAALSVEHDTAPTSKSILQVVAEQQQDTDKDA 119

Query: 119 PSIPLTEQ-SKDMSKHDADRVEIP--ETFTDLDTATPNGEILNENDSDVHLNHPPSPLPP 175
            SI   E+ + ++ KHD D VE+P      D  T+T NGEILNE   D  L HPPSPLP 
Sbjct: 120 SSIKSPERLANEVVKHDTDNVEVPVAAADADAKTSTSNGEILNEKAPDGFLEHPPSPLPA 179

Query: 176 KEMGIVNEDRID---DAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKVE 229
           KE+ ++NED  D   DAG   K +DA+ PL+ D   S+   +D P+N E  LKDAD+K  
Sbjct: 180 KEIEVLNEDHQDHPIDAGVNIKLSDAEVPLETDQERSQSANIDTPINDEIVLKDADLKAN 239

Query: 230 TLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYK 289
            + N++     KAD+ P K QDQL+EAQGLLKT ISTGQSKEARLARVCAGLS+RLQEYK
Sbjct: 240 PVVNQQDHHQQKADNSPKKIQDQLEEAQGLLKTAISTGQSKEARLARVCAGLSTRLQEYK 299

Query: 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349
           SENAQLEELL+AERELS+S E RIKQL+Q+LS  KSEVT+VESN+ EALAAKNSEIE LV
Sbjct: 300 SENAQLEELLIAERELSKSLETRIKQLQQDLSRSKSEVTRVESNMGEALAAKNSEIEALV 359

Query: 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH 409
           +SID LKKQAALSEGNLASLQ NMESIMRNRELTETRM+QALREEL+S ERRAEEERAAH
Sbjct: 360 NSIDVLKKQAALSEGNLASLQANMESIMRNRELTETRMMQALREELSSAERRAEEERAAH 419

Query: 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469
           NATKMAAMEREVELEHRA EAS ALARIQRIADERTAKA ELEQKVA+LEVECA+L QEL
Sbjct: 420 NATKMAAMEREVELEHRAVEASTALARIQRIADERTAKAAELEQKVALLEVECASLNQEL 479

Query: 470 QDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529
           QDME R++RGQKKSPEEANQ IQMQAWQ+EVERARQGQRDAENKLSS EAE+QKMRVEMA
Sbjct: 480 QDMETRVRRGQKKSPEEANQVIQMQAWQEEVERARQGQRDAENKLSSTEAELQKMRVEMA 539

Query: 530 AMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV- 588
           AMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLE MASEKAAAEFQLEKE+ R+++  
Sbjct: 540 AMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLEAMASEKAAAEFQLEKEVKRIKKXX 599

Query: 589 ----QSEAE-RSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAV 643
               Q EAE      R S SSWEED+EMK+LEPLPLHHRH+A AS+QLQKAAKLLDSGA 
Sbjct: 600 IDVKQIEAERSRVSRRASSSSWEEDSEMKALEPLPLHHRHMAVASMQLQKAAKLLDSGAA 659

Query: 644 RATRFLWRYPIARIILLFYLKSFAGICTSLL 674
           RATRFLWRYP AR+ILLFYL         LL
Sbjct: 660 RATRFLWRYPTARLILLFYLVFVHLFLMYLL 690

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738766|emb|CBI28011.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356560629|ref|XP_003548593.1| PREDICTED: golgin candidate 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225445112|ref|XP_002280503.1| PREDICTED: golgin candidate 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356497595|ref|XP_003517645.1| PREDICTED: golgin candidate 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449466268|ref|XP_004150848.1| PREDICTED: golgin candidate 1-like [Cucumis sativus] gi|449488127|ref|XP_004157946.1| PREDICTED: golgin candidate 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|334184316|ref|NP_001189556.1| golgin candidate 1 [Arabidopsis thaliana] gi|330251854|gb|AEC06948.1| golgin candidate 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|164708702|gb|ABY67248.1| putative golgin-84-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79557632|ref|NP_179585.3| golgin candidate 1 [Arabidopsis thaliana] gi|85681038|sp|Q8S8N9.2|GOGC1_ARATH RecName: Full=Golgin candidate 1; Short=AtGC1; AltName: Full=Golgin-84 gi|44917433|gb|AAS49041.1| At2g19950 [Arabidopsis thaliana] gi|110738790|dbj|BAF01318.1| hypothetical protein [Arabidopsis thaliana] gi|330251853|gb|AEC06947.1| golgin candidate 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297832160|ref|XP_002883962.1| hypothetical protein ARALYDRAFT_899882 [Arabidopsis lyrata subsp. lyrata] gi|297329802|gb|EFH60221.1| hypothetical protein ARALYDRAFT_899882 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query686
UNIPROTKB|Q6GNT7722 golga5 "Golgin subfamily A mem 0.625 0.594 0.250 1.2e-21
UNIPROTKB|Q8TBA6731 GOLGA5 "Golgin subfamily A mem 0.572 0.537 0.239 5.6e-21
UNIPROTKB|E2QWJ2731 GOLGA5 "Uncharacterized protei 0.848 0.796 0.209 7.2e-21
UNIPROTKB|F1SD67729 GOLGA5 "Uncharacterized protei 0.806 0.758 0.221 5.4e-20
MGI|MGI:1351475729 Golga5 "golgi autoantigen, gol 0.572 0.539 0.227 9e-20
UNIPROTKB|A5D7A5732 GOLGA5 "GOLGA5 protein" [Bos t 0.572 0.536 0.227 4.1e-19
UNIPROTKB|E1C947735 GOLGA5 "Uncharacterized protei 0.574 0.536 0.232 5.4e-19
RGD|1308163728 Golga5 "golgin A5" [Rattus nor 0.574 0.541 0.218 1.4e-18
ZFIN|ZDB-GENE-040426-2749760 golga5 "golgi autoantigen, gol 0.829 0.748 0.229 6.8e-17
ZFIN|ZDB-GENE-030131-9795 1336 rrbp1a "ribosome binding prote 0.762 0.391 0.226 2.2e-13
UNIPROTKB|Q6GNT7 golga5 "Golgin subfamily A member 5" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
 Score = 285 (105.4 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 114/455 (25%), Positives = 194/455 (42%)

Query:   216 NSESSLKDADVKVETLSNKRKQQALKADDPPTKE-QDQLDEAQGLLKTTISTGQSKEARL 274
             N ++S  D   +          +A+ A D      + +L EA  LLK+   T +S +   
Sbjct:   261 NGDNSKNDRTARELRAQVDDLSEAMAAKDSQLAVLKVRLQEADQLLKSRTETLESLQIEK 320

Query:   275 ARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
             +R+    S  S +     +  Q E L  AE  L R  E+  KQ++ E +   S++     
Sbjct:   321 SRILQDQSEGSSIHNQALQTMQ-ERLREAESTLIREQES-YKQIQNEFATRLSKIEAERQ 378

Query:   333 NLAEA-LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQXX 391
             NLAEA + A+   +E    S D L++Q   S+  L SL+  M    +      TR++Q  
Sbjct:   379 NLAEAVILAEKKHMEEKRKS-DDLQQQLKTSKVGLDSLKQEMADYKQKA----TRILQSK 433

Query:   392 XXXXXXXXXXXXXXXX-XHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGE 450
                               H+A+ M       ELE    E  M    IQ++  +      E
Sbjct:   434 EKLINSLKEGSGIEGLDSHSASTM-------ELEEMRHERDMQREEIQKLMGQIQQLKAE 486

Query:   451 LEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE-EANQAIQMQAWQDEVERARQGQRD 509
             L+        E  + +++LQD+  +    Q+   E EA    Q Q +Q   E   + +  
Sbjct:   487 LQDVETQQVSEAESAREQLQDVHEQFATQQRAKQELEAELERQKQEFQYIQEDLYKTKNT 546

Query:   510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS 569
              + ++   E E+QK+R ++       +  S     ELE R  +LT+ L  KQT LE +++
Sbjct:   547 LQGRIRDREDEIQKLRNQLTN-----KALSSSSQTELENRLHQLTETLIQKQTMLENLST 601

Query:   570 EKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXXXXXMKSLEPL-PLHHRHIAGAS 628
             EK +  +QLE+  ++L+                        M+++  L      ++AG  
Sbjct:   602 EKNSLVYQLERLEHQLKNVQGSSLNGTSINMSVIESNEGARMRNVPVLFSDSDPNVAGMY 661

Query:   629 VQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYL 663
              +++KAA  +D  ++R   FL RYPIAR+ ++ Y+
Sbjct:   662 GRVRKAATSIDQFSIRLGIFLRRYPIARVFIIIYM 696
GO:0005794 "Golgi apparatus" evidence=ISS
GO:0007030 "Golgi organization" evidence=ISS
GO:0042803 "protein homodimerization activity" evidence=ISS
GO:0048193 "Golgi vesicle transport" evidence=ISS
UNIPROTKB|Q8TBA6 GOLGA5 "Golgin subfamily A member 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWJ2 GOLGA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SD67 GOLGA5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1351475 Golga5 "golgi autoantigen, golgin subfamily a, 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7A5 GOLGA5 "GOLGA5 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C947 GOLGA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1308163 Golga5 "golgin A5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2749 golga5 "golgi autoantigen, golgin subfamily a, 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9795 rrbp1a "ribosome binding protein 1 homolog a (dog)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5JLY8GOGA5_ORYSJNo assigned EC number0.72560.65300.6318yesno
Q8S8N9GOGC1_ARATHNo assigned EC number0.60780.94160.9137yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016674001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (677 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00017645001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (684 aa)
      • 0.488
GSVIVG00037126001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (947 aa)
      • 0.427
GSVIVG00035969001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (354 aa)
    •   0.416

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query686
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-10
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-10
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-10
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-10
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-09
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-08
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 5e-08
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-06
pfam09787509 pfam09787, Golgin_A5, Golgin subfamily A member 5 1e-05
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 4e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 5e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 9e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 3e-04
PRK09039343 PRK09039, PRK09039, hypothetical protein; Validate 3e-04
PRK09039343 PRK09039, PRK09039, hypothetical protein; Validate 6e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.001
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.001
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.001
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
pfam09726680 pfam09726, Macoilin, Transmembrane protein 0.002
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 0.002
pfam13514 1118 pfam13514, AAA_27, AAA domain 0.002
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 0.002
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 0.003
PRK04863 1486 PRK04863, mukB, cell division protein MukB; Provis 0.003
pfam13166713 pfam13166, AAA_13, AAA domain 0.003
PRK12718 510 PRK12718, flgL, flagellar hook-associated protein 0.004
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information 
 Score = 64.7 bits (158), Expect = 1e-10
 Identities = 82/349 (23%), Positives = 147/349 (42%), Gaps = 37/349 (10%)

Query: 225  DVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSR 284
              ++E L  K ++   K  +   K   +L +    L+  +   + +   L+R  + L   
Sbjct: 676  RREIEELEEKIEELEEKIAEL-EKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 285  LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA---LAAK 341
            L   ++E  QLEE +    +     EA I++LE+ L   + E+ + E+ + E    +   
Sbjct: 735  LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 342  NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM------IQALREEL 395
              E++ L  ++D L+ +  L     A+L+  +ES+ R    TE R+      I+ L E++
Sbjct: 795  KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 396  ASVE----------RRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT 445
             S+              E E  A    + +  E    L     E S  L  ++    E  
Sbjct: 855  ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 446  AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQ 505
             +  EL +K+A LE+    L+  + +++ RL      + EEA         +D+ E AR+
Sbjct: 915  RELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA--LENKIEDDEEEARR 972

Query: 506  GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT 554
              +  ENK+  L        V +AA+         EE+ EL++RY  LT
Sbjct: 973  RLKRLENKIKELG------PVNLAAI---------EEYEELKERYDFLT 1006

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5 Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information
>gnl|CDD|79176 PRK12718, flgL, flagellar hook-associated protein FlgL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 686
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 100.0
KOG4677554 consensus Golgi integral membrane protein [Intrace 100.0
KOG0963629 consensus Transcription factor/CCAAT displacement 99.82
PF08172248 CASP_C: CASP C terminal; InterPro: IPR012955 This 99.64
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 99.41
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.73
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.72
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.7
KOG0971 1243 consensus Microtubule-associated protein dynactin 98.67
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 98.66
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.58
PRK02224 880 chromosome segregation protein; Provisional 98.56
PRK02224880 chromosome segregation protein; Provisional 98.55
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.51
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 98.49
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 98.49
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.48
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 98.41
PF10174775 Cast: RIM-binding protein of the cytomatrix active 98.37
KOG4673961 consensus Transcription factor TMF, TATA element m 98.37
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 98.36
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 98.35
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 98.34
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 98.28
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.28
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 98.27
PF00038312 Filament: Intermediate filament protein; InterPro: 98.24
PF05701522 WEMBL: Weak chloroplast movement under blue light; 98.23
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 98.19
KOG0977546 consensus Nuclear envelope protein lamin, intermed 98.18
KOG0996 1293 consensus Structural maintenance of chromosome pro 98.17
KOG4673 961 consensus Transcription factor TMF, TATA element m 98.13
PRK03918880 chromosome segregation protein; Provisional 98.11
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 98.11
KOG0977546 consensus Nuclear envelope protein lamin, intermed 98.1
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 98.1
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 98.09
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 98.06
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 98.05
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 98.04
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 98.02
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 98.01
PF00038312 Filament: Intermediate filament protein; InterPro: 98.01
PRK03918 880 chromosome segregation protein; Provisional 97.94
PRK04863 1486 mukB cell division protein MukB; Provisional 97.92
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 97.86
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 97.79
PRK04863 1486 mukB cell division protein MukB; Provisional 97.61
KOG0996 1293 consensus Structural maintenance of chromosome pro 97.53
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 97.52
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.48
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 97.43
PHA02562562 46 endonuclease subunit; Provisional 97.43
KOG09331174 consensus Structural maintenance of chromosome pro 97.38
KOG0933 1174 consensus Structural maintenance of chromosome pro 97.33
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 97.27
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 97.2
KOG0963629 consensus Transcription factor/CCAAT displacement 97.2
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 97.18
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 97.16
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 97.15
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 97.07
PF13851201 GAS: Growth-arrest specific micro-tubule binding 96.95
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 96.93
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 96.88
KOG0964 1200 consensus Structural maintenance of chromosome pro 96.63
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 96.62
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 96.59
PRK09039343 hypothetical protein; Validated 96.53
PF05701522 WEMBL: Weak chloroplast movement under blue light; 96.45
COG4942420 Membrane-bound metallopeptidase [Cell division and 96.44
COG4942420 Membrane-bound metallopeptidase [Cell division and 96.33
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 96.21
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 96.21
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.18
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 96.16
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 96.16
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 96.06
KOG4677554 consensus Golgi integral membrane protein [Intrace 96.02
PF05483 786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 96.0
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 95.98
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 95.9
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 95.84
PRK04778569 septation ring formation regulator EzrA; Provision 95.83
COG4372499 Uncharacterized protein conserved in bacteria with 95.79
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 95.77
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 95.76
PRK09039343 hypothetical protein; Validated 95.75
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 95.7
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 95.67
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 95.65
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 95.6
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 95.58
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 95.49
KOG00181141 consensus Structural maintenance of chromosome pro 95.42
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 95.41
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 95.35
PF13851201 GAS: Growth-arrest specific micro-tubule binding 95.34
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 95.31
PF14992280 TMCO5: TMCO5 family 95.17
PF10212518 TTKRSYEDQ: Predicted coiled-coil domain-containing 95.12
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 94.98
KOG2129552 consensus Uncharacterized conserved protein H4 [Fu 94.95
PF06705247 SF-assemblin: SF-assemblin/beta giardin 94.93
PF05010207 TACC: Transforming acidic coiled-coil-containing p 94.93
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 94.74
PRK01156 895 chromosome segregation protein; Provisional 94.62
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 94.56
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 94.37
PF14662193 CCDC155: Coiled-coil region of CCDC155 94.36
PRK04778569 septation ring formation regulator EzrA; Provision 94.29
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 94.22
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 94.21
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 94.15
PRK11281 1113 hypothetical protein; Provisional 94.13
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 94.04
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 93.9
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 93.85
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 93.85
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 93.79
KOG0964 1200 consensus Structural maintenance of chromosome pro 93.67
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 93.64
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 93.47
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 93.44
PF07111 739 HCR: Alpha helical coiled-coil rod protein (HCR); 93.41
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 93.39
PRK10884206 SH3 domain-containing protein; Provisional 93.38
KOG09621294 consensus DNA repair protein RAD50, ABC-type ATPas 93.36
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 93.33
PRK102461047 exonuclease subunit SbcC; Provisional 93.27
PF13514 1111 AAA_27: AAA domain 93.22
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 93.2
KOG2129552 consensus Uncharacterized conserved protein H4 [Fu 92.65
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 92.56
KOG4593 716 consensus Mitotic checkpoint protein MAD1 [Cell cy 92.55
PF14662193 CCDC155: Coiled-coil region of CCDC155 92.2
PF05911769 DUF869: Plant protein of unknown function (DUF869) 92.17
PRK01156895 chromosome segregation protein; Provisional 92.1
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 91.85
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 91.82
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 91.77
PF07111 739 HCR: Alpha helical coiled-coil rod protein (HCR); 91.74
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 91.51
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 91.48
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 91.33
KOG1937521 consensus Uncharacterized conserved protein [Funct 91.11
KOG0249 916 consensus LAR-interacting protein and related prot 91.02
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 90.86
PRK10929 1109 putative mechanosensitive channel protein; Provisi 90.86
PF06818202 Fez1: Fez1; InterPro: IPR009638 This family repres 90.81
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 90.72
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 90.69
TIGR01010362 BexC_CtrB_KpsE polysaccharide export inner-membran 90.27
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 90.15
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 90.09
KOG4593 716 consensus Mitotic checkpoint protein MAD1 [Cell cy 89.6
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 89.36
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 89.22
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 89.16
PF05010207 TACC: Transforming acidic coiled-coil-containing p 88.87
PF15397258 DUF4618: Domain of unknown function (DUF4618) 88.76
PF03148384 Tektin: Tektin family; InterPro: IPR000435 Tektin 88.69
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 88.67
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 88.61
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 88.44
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 88.21
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 88.17
PF15254 861 CCDC14: Coiled-coil domain-containing protein 14 88.14
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 88.03
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 88.02
PF10267395 Tmemb_cc2: Predicted transmembrane and coiled-coil 87.64
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 87.4
PF135141111 AAA_27: AAA domain 87.29
PLN02939 977 transferase, transferring glycosyl groups 87.16
PLN02939 977 transferase, transferring glycosyl groups 86.95
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 86.89
COG0419 908 SbcC ATPase involved in DNA repair [DNA replicatio 86.81
PRK10884206 SH3 domain-containing protein; Provisional 86.77
PF03148384 Tektin: Tektin family; InterPro: IPR000435 Tektin 86.01
KOG4360 596 consensus Uncharacterized coiled coil protein [Fun 85.79
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 85.33
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 84.91
KOG4809654 consensus Rab6 GTPase-interacting protein involved 84.36
KOG1003205 consensus Actin filament-coating protein tropomyos 84.32
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 84.31
COG0419 908 SbcC ATPase involved in DNA repair [DNA replicatio 84.07
KOG4807593 consensus F-actin binding protein, regulates actin 83.88
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 83.87
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 83.68
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 83.54
KOG4603201 consensus TBP-1 interacting protein [Signal transd 83.46
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 83.09
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 82.96
PRK11281 1113 hypothetical protein; Provisional 82.48
PF15397258 DUF4618: Domain of unknown function (DUF4618) 82.47
KOG2991330 consensus Splicing regulator [RNA processing and m 82.4
PRK09841726 cryptic autophosphorylating protein tyrosine kinas 82.22
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 82.16
COG4372499 Uncharacterized protein conserved in bacteria with 81.84
PF05335188 DUF745: Protein of unknown function (DUF745); Inte 81.68
PF06818202 Fez1: Fez1; InterPro: IPR009638 This family repres 81.64
KOG0249 916 consensus LAR-interacting protein and related prot 81.47
PLN031881320 kinesin-12 family protein; Provisional 81.42
PRK10361475 DNA recombination protein RmuC; Provisional 81.05
COG2433652 Uncharacterized conserved protein [Function unknow 80.99
KOG1899 861 consensus LAR transmembrane tyrosine phosphatase-i 80.79
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information 
Probab=100.00  E-value=5e-34  Score=320.59  Aligned_cols=373  Identities=25%  Similarity=0.306  Sum_probs=248.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHH----HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641          270 KEARLARVCAGLSSRLQEYKSENAQLEEL----LV----------AERELSRSYEARIKQLEQELSVYKSEVTKVESNLA  335 (686)
Q Consensus       270 ke~qLav~~~RLrk~~qel~~~~aqLEe~----~~----------el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~  335 (686)
                      ..+++++++++|.+..+|++....+++++    .+          ......+.|+.++..++.++.+.+.++..+...|.
T Consensus       107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl  186 (511)
T PF09787_consen  107 LSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFL  186 (511)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence            34599999999999999999999999986    11          11223488899999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH-------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-
Q 005641          336 EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM-------ESIMRNREL---TETRMIQALREELASVERRAEE-  404 (686)
Q Consensus       336 ~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~-------~~L~qel~~---~ekRilqsLe~eLkslq~~lEq-  404 (686)
                      ++...++..++.|..+..++. .+........+++...       +....++..   ++.+|++++++.|.+|+.+... 
T Consensus       187 ~rtl~~e~~~~~L~~~~~A~~-~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~  265 (511)
T PF09787_consen  187 KRTLKKEIERQELEERPKALR-HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEE  265 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence            999999999999999999554 4555554444444433       334444444   3778999999999999983322 


Q ss_pred             HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 005641          405 ERAAHNA-TKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS  483 (686)
Q Consensus       405 E~~aHs~-Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e  483 (686)
                      ....+.. ...+.+..      +...+.+-+..++..+.+.+.++.+.+.+..   .+...+++..+.+.......... 
T Consensus       266 ~~~~~~~~~el~~l~~------E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~-  335 (511)
T PF09787_consen  266 GFDSSTNSIELEELKQ------ERDHLQEEIQLLERQIEQLRAELQDLEAQLE---GEQESFREQPQELSQQLEPELTT-  335 (511)
T ss_pred             ccccccchhcchhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhch-
Confidence            1221111 11222222      2222222222333333333222222222211   11222222222222211111100 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHH
Q 005641          484 PEEANQAIQMQAWQDEVERARQGQ----RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYY  559 (686)
Q Consensus       484 ~~~a~qv~~lk~Lq~EL~~lR~~~----~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~Lie  559 (686)
                        +    ..++.+..|+.+++...    ..+..++...+.|+++|+.++.+     .. +.....+||.||+.||+.|++
T Consensus       336 --e----~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~-----~~-~~s~~~elE~rl~~lt~~Li~  403 (511)
T PF09787_consen  336 --E----AELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSA-----RA-SSSSWNELESRLTQLTESLIQ  403 (511)
T ss_pred             --H----HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH-----Hh-ccCCcHhHHHHHhhccHHHHH
Confidence              0    12234455555555432    34456888899999999999988     22 334468999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC--CCCcccccccccCCCCccccccchhhhHHHHHHhhh
Q 005641          560 KQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS--WSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKL  637 (686)
Q Consensus       560 KQ~qlE~L~sEk~aL~~qLErl~~~~~~e~~~~ersr~s~~~--~~~~~dd~~~~~l~P~~~~~~~~~~~~~rvk~a~s~  637 (686)
                      ||++||.|.+||++|.+|||++...+++..+   ..+.+.+.  +..+.+|.. .++.|++.+++|+.++++||++|+++
T Consensus       404 KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~---~~~~~~~~~~~~~~~~d~~-~r~~~~~~~~~~d~~~~~r~~~a~~~  479 (511)
T PF09787_consen  404 KQTQLESLGSEKNALRLQLERLETQLKEEAS---NNRPSSILMKYSNSEDDAE-SRVPLLMKDSPHDIGVARRVKRAASV  479 (511)
T ss_pred             HHHHHHHHHhhhhhccccHHHHHHHHHhhcc---CCCCchhhHhhccCCCchh-hhhhhhccCCCccchHHHHHHHHHHH
Confidence            9999999999999999999999999886211   11222222  234444432 23333334567888999999999999


Q ss_pred             hhhhHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q 005641          638 LDSGAVRATRFLWRYPIARIILLFYLKSFAGI  669 (686)
Q Consensus       638 lDs~~ir~g~fLRR~P~aRl~~l~Y~vlLHlw  669 (686)
                      ||+|+||+|+||||||++|+||||||++||||
T Consensus       480 iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW  511 (511)
T PF09787_consen  480 IDSFSIRLGIFLRRYPMARIFVIIYMALLHLW  511 (511)
T ss_pred             HhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF14992 TMCO5: TMCO5 family Back     alignment and domain information
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>PF06705 SF-assemblin: SF-assemblin/beta giardin Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PRK10246 exonuclease subunit SbcC; Provisional Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>KOG2991 consensus Splicing regulator [RNA processing and modification] Back     alignment and domain information
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function Back     alignment and domain information
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>PRK10361 DNA recombination protein RmuC; Provisional Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query686
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-17
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-16
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-13
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 6e-07
2zuo_A861 MVP, major vault protein; repeat domains, protein- 4e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 1e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 7e-04
2xs1_A704 Programmed cell death 6-interacting protein; prote 9e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 86.8 bits (215), Expect = 1e-17
 Identities = 61/341 (17%), Positives = 139/341 (40%), Gaps = 43/341 (12%)

Query: 248  KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSR 307
            ++  QL E + LL+  +       A    +   L+++ QE +    ++E  +  E E S+
Sbjct: 885  QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944

Query: 308  SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367
              +A  K+++Q++   + ++ + E+   +    K     T    I  ++    + E    
Sbjct: 945  QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK----VTADGKIKKMEDDILIMEDQNN 1000

Query: 368  SLQMNMESIMRNRELTETRMIQALREELASVERR-AEEERAAHNATKMAAMEREVELEHR 426
             L               T+  + L E ++ +    AEEE  A N TK+       + E  
Sbjct: 1001 KL---------------TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN-----KHESM 1040

Query: 427  AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE 486
             +E  + L + ++   E      +LE + + L  + A LQ ++ +++A+L + ++     
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE----- 1095

Query: 487  ANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMEL 546
                 ++QA    +E     + +A  K+  LE+ +  ++ ++ +         +    + 
Sbjct: 1096 -----ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES--------EKAARNKA 1142

Query: 547  EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587
            EK+ R+L++ L   +T+LE      A  +     +     +
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query686
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 99.88
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.89
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.8
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.59
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.41
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 97.81
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 97.05
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 96.95
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.7
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.7
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 96.32
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 96.26
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.99
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 95.81
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 95.31
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 94.12
4gkw_A167 Spindle assembly abnormal protein 6; double helix, 93.66
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 93.66
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 93.47
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 93.24
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 91.4
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 91.34
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 90.63
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 89.69
2e7s_A135 RAB guanine nucleotide exchange factor SEC2; coile 87.99
1x79_B112 RAB GTPase binding effector protein 1; rabaptin5, 87.62
2v4h_A110 NF-kappa-B essential modulator; transcription, met 87.18
1x79_B112 RAB GTPase binding effector protein 1; rabaptin5, 85.86
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 85.41
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 84.9
2e7s_A135 RAB guanine nucleotide exchange factor SEC2; coile 84.14
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 82.57
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 82.24
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 82.01
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 81.22
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 80.25
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 80.23
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
Probab=99.88  E-value=2.2e-21  Score=186.59  Aligned_cols=161  Identities=22%  Similarity=0.224  Sum_probs=141.8

Q ss_pred             hcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641          241 KADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL  320 (686)
Q Consensus       241 ~~~ek~~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL  320 (686)
                      +.|+|+++|++||+++|.+||+|+|+           ++||||..+|+.+..+++|..+++++++|+.|++.+..|+.++
T Consensus         3 ~~neKi~~LekQL~E~n~kLk~EsE~-----------~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~   71 (168)
T 3o0z_A            3 LANEKLSQLQKQLEEANDLLRTESDT-----------AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDY   71 (168)
T ss_dssp             -------CTHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999996           9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 005641          321 SVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR----EELA  396 (686)
Q Consensus       321 ~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe----~eLk  396 (686)
                      ..+|..|.+...+ ..+.   ...+.+|+++|.+|+.++...+.++..+..+++.|++.+++++|. +.+++    ++|+
T Consensus        72 ~~LQa~L~qEr~~-r~q~---se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe-~a~~eid~~~eLK  146 (168)
T 3o0z_A           72 YQLQAILEAERRD-RGHD---SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE-KNNLEIDLNYKLK  146 (168)
T ss_dssp             HHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence            9999999998887 4555   788899999999999999999999999999999999999999995 99999    8899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 005641          397 SVERRAEEERAAHNATKMAAM  417 (686)
Q Consensus       397 slq~~lEqE~~aHs~Tr~eal  417 (686)
                      ++|++|++|..+|..|++++.
T Consensus       147 alQ~~~eqE~~~H~~TkarL~  167 (168)
T 3o0z_A          147 SLQQRLEQEVNEHKVTKARLT  167 (168)
T ss_dssp             HHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999977653
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2 Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2 Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00