Citrus Sinensis ID: 005655
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 685 | 2.2.26 [Sep-21-2011] | |||||||
| Q921I2 | 584 | Kelch domain-containing p | yes | no | 0.672 | 0.789 | 0.375 | 2e-87 | |
| Q8TBB5 | 520 | Kelch domain-containing p | yes | no | 0.696 | 0.917 | 0.365 | 3e-85 | |
| Q5R8W1 | 522 | Kelch domain-containing p | yes | no | 0.656 | 0.862 | 0.370 | 2e-84 | |
| Q08979 | 651 | Kelch repeat-containing p | yes | no | 0.627 | 0.660 | 0.311 | 9e-56 | |
| P87061 | 1147 | Tip elongation aberrant p | yes | no | 0.331 | 0.197 | 0.275 | 4e-24 | |
| O14248 | 1125 | Tip elongation aberrant p | no | no | 0.293 | 0.178 | 0.277 | 2e-21 | |
| Q7M3S9 | 943 | RING finger protein B OS= | yes | no | 0.329 | 0.239 | 0.270 | 1e-20 | |
| P38853 | 1164 | Kelch repeat-containing p | no | no | 0.331 | 0.195 | 0.257 | 2e-19 | |
| Q54C94 | 1127 | Ras guanine nucleotide ex | no | no | 0.369 | 0.224 | 0.241 | 7e-19 | |
| P50090 | 882 | Kelch repeat-containing p | no | no | 0.340 | 0.264 | 0.253 | 1e-17 |
| >sp|Q921I2|KLDC4_MOUSE Kelch domain-containing protein 4 OS=Mus musculus GN=Klhdc4 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 191/509 (37%), Positives = 281/509 (55%), Gaps = 48/509 (9%)
Query: 13 EKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNC 72
EKT K K KR+R+E E+D++A++ Q +AKK +V E P PSPR N
Sbjct: 15 EKTAAKMEKKVSKRSRKE------EEDLEALIAHFQTLDAKKTQV-TETPCPPPSPRLNA 67
Query: 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV- 131
SL+ +P K+ ELIL+GGE++NG KT++Y +LY Y + K W + P PP R AHQAV
Sbjct: 68 SLSAHPEKD-ELILFGGEYFNGQKTFMYNELYIYSIRKDTWTKVDIPGPPPRRCAHQAVV 126
Query: 132 --SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189
L++FGGEF SP+ E+F+HYKD W+L L T WEQ+ G PS RSGHRMV +K
Sbjct: 127 VPQGGGQLWVFGGEFASPDGEQFYHYKDLWVLHLATKTWEQIRSTGGPSGRSGHRMVAWK 186
Query: 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEV 248
++I+FGGF+++ R+ YY+D+Y F LD F+W ++ P P+PRSG V Q +
Sbjct: 187 RQLILFGGFHESARDYIYYSDVYTFSLDTFQWSKLSPSGAG--PTPRSGCLMAVTPQGSI 244
Query: 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-----TWEWSKVKKIGMPPGPRAGFSMC 303
+YGGYSK+ K +KG HSD++ L P W W+++ G+ P R+GFS+
Sbjct: 245 AIYGGYSKQ--RVKKDVDKGTQHSDMFLLKPAEGGEGKWAWTRINPSGVKPTARSGFSVA 302
Query: 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSS 362
V + L+FGGV D E + + S F ++LY + RW+ +L+ KS K K ++
Sbjct: 303 VAPNHQILVFGGVCDEEEEESLEGSFF-SDLYIYDAAKSRWFAAQLKGPKSEKKKRRRGK 361
Query: 363 EQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGV 422
+ P + +E + E E +E + + + + V+ G+
Sbjct: 362 AEDPEGTT---------EQETGGSSAPEPLEVIKEVVSEDGTVVTIKQ-----VLTPSGL 407
Query: 423 LAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITL 482
G +P S K D +PC R N+ + V LYVYGGM E D+++TL
Sbjct: 408 -----GVQP--SPKADDSASEASSTGQEPCPRSNAMLAVKHGLLYVYGGMFEAGDRQVTL 460
Query: 483 DDLYSLNLSKLDEWKCII---PASESEWV 508
DLY L+L K++EWK ++ P S+ EW+
Sbjct: 461 SDLYCLDLHKMEEWKTLVEMDPKSQ-EWL 488
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Mus musculus (taxid: 10090) |
| >sp|Q8TBB5|KLDC4_HUMAN Kelch domain-containing protein 4 OS=Homo sapiens GN=KLHDC4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 198/541 (36%), Positives = 298/541 (55%), Gaps = 64/541 (11%)
Query: 13 EKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNC 72
EKT K K KR+R+E E+D++A++ Q +AK+ + VE P PSPR N
Sbjct: 15 EKTAAKMEKKVSKRSRKE------EEDLEALIAHFQTLDAKRTQT-VELPCPPPSPRLNA 67
Query: 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV- 131
SL+++P K+ ELIL+GGE++NG KT++Y +LY Y+ K W + P+ PP R AHQAV
Sbjct: 68 SLSVHPEKD-ELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRCAHQAVV 126
Query: 132 --SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189
L++FGGEF SPN E+F+HYKD W+L L T WEQ+ G PS RSGHRMV +K
Sbjct: 127 VPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGGPSGRSGHRMVAWK 186
Query: 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEV 248
++I+FGGF+++ R+ YYND+Y F+LD F W ++ P P+PRSG Q V Q +
Sbjct: 187 RQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLSPS--GTGPTPRSGCQMSVTPQGGI 244
Query: 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-----TWEWSKVKKIGMPPGPRAGFSMC 303
+YGGYSK+ K +KG HSD++ L P W W+++ G+ P PR+GFS+
Sbjct: 245 VVYGGYSKQRV--KKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFSVA 302
Query: 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSS 362
+ + L FGGV D E + + F N+LY + +RW+ +L+ KS K K ++
Sbjct: 303 MAPNHQTLFFGGVCDEEEEES-LSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRGR 361
Query: 363 EQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVP--NSVIVDD 420
+++P + P + + + E V +V+
Sbjct: 362 KEEPEGGS-----RPACG-----------------GAGTQGPVQLVKEVVAEDGTVVTIK 399
Query: 421 GVLAAK-SGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQE 479
VL A S G+P S+ + ++++ P PC R N+ + V LYVYGGM E D++
Sbjct: 400 QVLTAPGSAGQP-RSEDEDSLEEAGSP-APGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQ 457
Query: 480 ITLDDLYSLNLSKLDEWKCII---PASESEWVEASE----------GEDEDDDEDDSEDE 526
+TL DL+ L+L +++ WK ++ P ++ EW+E ++ E DDED E+
Sbjct: 458 VTLSDLHCLDLHRMEAWKALVEMDPETQ-EWLEETDSEEDSEEVEGAEGGVDDEDSGEES 516
Query: 527 G 527
G
Sbjct: 517 G 517
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Homo sapiens (taxid: 9606) |
| >sp|Q5R8W1|KLDC4_PONAB Kelch domain-containing protein 4 OS=Pongo abelii GN=KLHDC4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 314 bits (804), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 186/502 (37%), Positives = 279/502 (55%), Gaps = 52/502 (10%)
Query: 13 EKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNC 72
EKT K K KR+R+E E+D++A++ Q +AK+ + VE P PSPR N
Sbjct: 15 EKTAAKMEKKVSKRSRKE------EEDLEALIAHFQTLDAKRTQT-VEAPCPPPSPRLNA 67
Query: 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV- 131
SL+++P K+ ELIL+GGE++NG KT++Y +LY Y++ K W + P+ PP R AHQAV
Sbjct: 68 SLSVHPEKD-ELILFGGEYFNGQKTFLYNELYVYNIRKDTWTKVDIPSPPPRRCAHQAVV 126
Query: 132 --SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189
L++FGGEF SPN E+F+HYKD W+L L T WEQ+ G PS RSGHRMV +K
Sbjct: 127 VPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGSPSGRSGHRMVAWK 186
Query: 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEV 248
++I+FGGF+++ R+ YYND+Y F+LD F W ++ P P+PRSG Q V Q +
Sbjct: 187 RQLILFGGFHESTRDYIYYNDVYTFNLDTFTWSKLSPS--GTGPTPRSGCQMSVTPQGGI 244
Query: 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-----TWEWSKVKKIGMPPGPRAGFSMC 303
+YGGYSK+ K ++G HSD++ L P W W+++ G+ P PR+GFS
Sbjct: 245 IIYGGYSKQ--RVKKDVDRGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFSAA 302
Query: 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSS 362
+ + L FGGV D E + + F N+LY + +RW+ +L+ KS K K ++
Sbjct: 303 MALNHQTLFFGGVCDEEEEES-LAGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRGR 361
Query: 363 EQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVP--NSVIVDD 420
+++ + ++ + + + E V +V+
Sbjct: 362 KEE----------------------SEGGSKLACGGAGTQGPVQVVKEVVAEDGTVVTIK 399
Query: 421 GVLAAK-SGGKP-YESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQ 478
VLAA S G+P E + + S P PC R N+ + V LYVYGGM E D+
Sbjct: 400 QVLAAPGSAGQPRSEDEDSPEEAGSSAP---GPCPRSNAMLAVKHGVLYVYGGMFEAGDR 456
Query: 479 EITLDDLYSLNLSKLDEWKCII 500
++TL DL+ L+L +++ WK ++
Sbjct: 457 QVTLSDLHCLDLHRMEAWKALV 478
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Pongo abelii (taxid: 9601) |
| >sp|Q08979|KEL3_YEAST Kelch repeat-containing protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KEL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (556), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 148/475 (31%), Positives = 239/475 (50%), Gaps = 45/475 (9%)
Query: 37 EDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPL-KETELILYGGEFYNGN 95
+ D+D IL S K++ + + V + +V PS R++ + NP + EL ++GGEF +
Sbjct: 48 DQDLDEILSSFSKKQIELEHVDIT-SVEKPSCRTHPLMFANPQHNKHELFIFGGEFTDPE 106
Query: 96 K--TYVYGDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEFTSPNQERF 152
T+ Y DLY Y ++ WK S N+P PRS A AV + GGEF+SP Q +F
Sbjct: 107 TKLTHFYNDLYSYSIKNNSWKKYVSQNAPLPRSSAAVAVHPSGIALLHGGEFSSPKQSKF 166
Query: 153 HHYKDFWMLDLKTNQWEQLNLKG---CPSPRSGHRMVLYKHKIIVFGGFYDTLR-EVRYY 208
+HY D W+ D ++ +L G PS RSGHR++ +K+ I+FGGF D + Y
Sbjct: 167 YHYSDTWLFDCVERKFTKLEFGGRDSSPSARSGHRIIAWKNYFILFGGFRDLGNGQTSYL 226
Query: 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268
NDL+ FD+ +KW +++ P RSG F + L GGY K ++ + KG
Sbjct: 227 NDLWCFDISTYKWTKLETNSK---PDARSGHCFIPTDNSAILMGGYCKIIAKNNKNLMKG 283
Query: 269 IIHSDLWSL----DPRTWEWSKVKKIGMPPGPRAGFSMCVHKK-RALLFGGVVDMEMKGD 323
I +D W L DP+ W+W K+K P PR G+S + K+ +++ FGGV D++ +
Sbjct: 284 KILNDAWKLNLTPDPKKWQWEKLKNFKNQPSPRVGYSFNLWKQNKSVAFGGVYDLQETEE 343
Query: 324 VIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDK----LKKSSEQKPNSSALHEKLNPIE 379
+ S+F N+LY F L+ ++W L ++ ++ T K K K L + LN I
Sbjct: 344 SLESVFYNDLYMFHLELNKWSKLRIKPQRQTNSKNSPATSKRKSNKDQEKELQDLLNSIL 403
Query: 380 AEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSD 439
A+ ++ + + D+ S PNS+ D+ E D
Sbjct: 404 AK--------------SNLNDDDDDNDDNSTTGPNSIDDDEDN----------EDDSDLD 439
Query: 440 MQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
Q+ + P R N+ V D+L++Y G+ E+ +++ ++ YS++L+KLD
Sbjct: 440 NQEDITISNQLPHPRFNAATCVVGDSLFIYSGVWELGEKDYPINSFYSIDLNKLD 494
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P87061|TEA1_SCHPO Tip elongation aberrant protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 120/269 (44%), Gaps = 42/269 (15%)
Query: 94 GNKTYVYG----------DLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSWKNYLYIFGG 142
G + Y++G DL+ ++ ++ + S +P PR H ++ N +FGG
Sbjct: 92 GQEIYIFGGVASDSQPKNDLWVLNLATSQFTSLRSLGETPSPRLGHASILIGNAFIVFGG 151
Query: 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDT 201
+R ++L+ + W++ N G PS R GH + KI +FGG
Sbjct: 152 LTNHDVADR--QDNSLYLLNTSSLVWQKANASGARPSGRYGHTISCLGSKICLFGG---- 205
Query: 202 LREVRYY-NDLYVFDLDQFKWQEIKPRFGSMW---PSPRSGFQFFVYQDEVFLYGGYSKE 257
R + YY NDL FDL+ + + S+ P R+G F + D+++++GG
Sbjct: 206 -RLLDYYFNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKLYIFGG---- 260
Query: 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317
++ +DLW P+ WSKV+ G+ P PRAG + V + +FGG
Sbjct: 261 -------TDGANFFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAASVVEGILYVFGGRAS 313
Query: 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
FLN+LY F+L + WY L
Sbjct: 314 --------DGTFLNDLYAFRLSSKHWYKL 334
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Cell polarity protein. Acts as an end marker, directing the growth machinery to the cell poles. Involved in the regulation of microtubular organization, affecting the maintenance of a single central axis. Prevents the curling of microtubule tips around the cell ends and is required for the retention of polarity factors such as pom1, tip1 and tea2 at the cell ends, necessary for the cell to grow in a straight line. Links tip1 and tea4 in a common complex. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O14248|TEA3_SCHPO Tip elongation aberrant protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 107/252 (42%), Gaps = 51/252 (20%)
Query: 120 NSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS 178
N P R H V + +Y+FGG + + + + K+NQW ++ + PS
Sbjct: 108 NDSPARVGHSIVCSADTIYLFGGCDSETDSTFEVGDNSLYAYNFKSNQWNLVSTQSPLPS 167
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFD----------------------- 215
PR+GH M+L K+ +FGG + +Y ND+++FD
Sbjct: 168 PRTGHSMLLVDSKLWIFGGEC----QGKYLNDIHLFDTKGVDRRTQSELKQKANANNVEK 223
Query: 216 ----LDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIH 271
D+ W P S P PRS + Q ++F++GG++ + G +
Sbjct: 224 ANMEFDETDWSWETPFLHSSSPPPRSNHSVTLVQGKIFVHGGHN----------DTGPL- 272
Query: 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLN 331
SDLW D T W++V+ IG PGPR G ++GG + KG L LN
Sbjct: 273 SDLWLFDLETLSWTEVRSIGRFPGPREGHQATTIDDTVYIYGG---RDNKG-----LILN 324
Query: 332 ELYGFQLDNHRW 343
EL+ F RW
Sbjct: 325 ELWAFNYSQQRW 336
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Acts as a cell end marker required for efficient new end take-off (NETO), whereby growth is activated at the cell end to generate bipolarity in extending cells. Also required for proper placement of the septum. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 48/274 (17%)
Query: 88 GGEFYNGNKTYVYGDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSWKNY---------L 137
G + GN + D+ Y++ W K+ + N+P R H AV +++ +
Sbjct: 30 GFIVFGGNSNRAFNDIQYYNIFNNSWSKIEAVGNAPSERYGHSAVLYQSQSRPYSDSYQI 89
Query: 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIV 194
FGG TS + D +L + +N+ W+Q+ K R+GH V+Y+ ++V
Sbjct: 90 IFFGGRATSK------PFSDINILYVNSNRSFIWKQVTTKSIEG-RAGHTAVVYRQNLVV 142
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFF-VYQDEVFLYGG 253
FGG + + +YYN + +F L+ +W++ G + PS R+ F V +++F++GG
Sbjct: 143 FGGHNN--HKSKYYNSVLLFSLESNEWRQ--QVCGGVIPSARATHSTFQVNNNKMFIFGG 198
Query: 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC-VHKKRALLF 312
Y + ++D++ LD TW W KV+ G PP PR+G S + + ++F
Sbjct: 199 YDGKK-----------YYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSATMIQNNKLMIF 247
Query: 313 GGVVDMEMKGDVIMSLFLNELYGFQLDN---HRW 343
GG D S FLN+++ ++ +RW
Sbjct: 248 GGC-----GSD---SNFLNDIHILHIEGANEYRW 273
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P38853|KEL1_YEAST Kelch repeat-containing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KEL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 53/280 (18%)
Query: 95 NKTYVYGDLYRYDVEKQEWKVISSPN--------------SPPPRSAHQAVSWKNYLYIF 140
N+ YV G L+ V W + + N +PPPR H AV N +F
Sbjct: 138 NQIYVIGGLHDQSVYGDTWILTAFDNATRFSTTTIDISEATPPPRVGHAAVLCGNAFVVF 197
Query: 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP--RSGHRMVLY-----KHKII 193
GG+ N+E D ++L++ + +W G P P R GH++ + K K+
Sbjct: 198 GGDTHKVNKEGLMD-DDIYLLNINSYKWTVPAPVG-PRPLGRYGHKISIIATTQMKTKLY 255
Query: 194 VFGGFYDTLREVRYYNDLYVFDLDQFK-----WQEIKPRFGSMWPSPRSGFQFFVYQDEV 248
VFGG +D Y+NDL V+DL F+ W+ +KPR + P P + F Y ++
Sbjct: 256 VFGGQFDD----TYFNDLAVYDLSSFRRPDSHWEFLKPR--TFTPPPITNFTMISYDSKL 309
Query: 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKR 308
+++GG + +G+++ D++ DP +W + G P P + V+
Sbjct: 310 WVFGG----------DTLQGLVN-DVFMYDPAINDWFIIDTTGEKPPPVQEHATVVYNDL 358
Query: 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348
+ GG + + +LN +Y L + +W+ L +
Sbjct: 359 MCVVGGKDEHDA--------YLNSVYFLNLKSRKWFKLPV 390
|
Has a role in cell morphogenesis and cell fusion and may antagonize the PKC1 pathway. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q54C94|GEFF_DICDI Ras guanine nucleotide exchange factor F OS=Dictyostelium discoideum GN=gefF PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 132/286 (46%), Gaps = 33/286 (11%)
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
L+GG +G+ T D Y + + W +++ ++P R+ H V + N +YIFGG
Sbjct: 215 LFGGTLPDGSYT---NDFYTFQFAIKAWTILTFGSAPSIRTRHTGVLYNNSMYIFGGY-- 269
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFY--DTL 202
SP+ + D ++ T W ++ +G PSPR GH V+ +IVFGG T
Sbjct: 270 SPSGPK----NDIYVFSFDTQTWSEVQTEGTKPSPRYGHTAVVESGHMIVFGGISCDQTT 325
Query: 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262
++ ND++ +LD +W ++ + PSPR+ +++ ++++GG ++
Sbjct: 326 KQQTVNNDIFSLNLDTKQWSQV---LSTCPPSPRTHHTATMHKGNMYVFGGQDQQ----S 378
Query: 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKG 322
NQ E I+H W+ + W ++ G PR+ S + + + GG +
Sbjct: 379 NQVED-IVHCYTWASN----SWKSIQFEGSSMTPRSDHSAVLFQDSIFISGGSSKSQTSQ 433
Query: 323 DVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNS 368
++ E+Y + L + + ++ ++++ SS K NS
Sbjct: 434 NL-------EIYEYDLYQKKCF--KISSSTIVQNRISHSSVVKGNS 470
|
Promotes the exchange of Ras-bound GDP by GTP. Dictyostelium discoideum (taxid: 44689) |
| >sp|P50090|KEL2_YEAST Kelch repeat-containing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KEL2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 122/284 (42%), Gaps = 51/284 (17%)
Query: 93 NGNKTYVYGDLYRYDVEKQEWKVISSP--------------NSPPPRSAHQAVSWKNYLY 138
N N+ +V G L+ V W++ ++ N+PPPR H + N
Sbjct: 96 NDNRIFVTGGLHDQSVYGDVWQIAANADGTSFTSKRIDIDQNTPPPRVGHASTICGNAYV 155
Query: 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLY-----KHKI 192
+FGG+ N+ D ++ ++ + +W G P R GH++ + + K+
Sbjct: 156 VFGGDTHKLNKNGLLD-DDLYLFNINSYKWTIPQPIGRRPLGRYGHKISIIASNPMQTKL 214
Query: 193 IVFGGFYDTLREVRYYNDLYVFDLDQFK-----WQEIKPRFGSMWPSPRSGFQFFVYQDE 247
+FGG D Y+NDL VFDL F+ W+ ++P G + P P + Y ++
Sbjct: 215 YLFGGQVDE----TYFNDLVVFDLSSFRRPNSHWEFLEP-VGDL-PPPLTNHTMVAYDNK 268
Query: 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307
++++GG + + I +D + DP EWSKVK G P P + V+K
Sbjct: 269 LWVFGGETPKT-----------ISNDTYRYDPAQSEWSKVKTTGEKPPPIQEHASVVYKH 317
Query: 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKE 351
+ G G + + N++Y L + +WY L KE
Sbjct: 318 LMCVLG--------GKDTHNAYSNDVYFLNLLSLKWYKLPRMKE 353
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 685 | ||||||
| 118488318 | 680 | unknown [Populus trichocarpa] | 0.951 | 0.958 | 0.807 | 0.0 | |
| 225456767 | 682 | PREDICTED: kelch domain-containing prote | 0.945 | 0.950 | 0.790 | 0.0 | |
| 147781765 | 697 | hypothetical protein VITISV_027056 [Viti | 0.953 | 0.936 | 0.778 | 0.0 | |
| 255540383 | 681 | kelch repeat protein, putative [Ricinus | 0.967 | 0.973 | 0.779 | 0.0 | |
| 356508772 | 661 | PREDICTED: kelch domain-containing prote | 0.944 | 0.978 | 0.766 | 0.0 | |
| 356518912 | 660 | PREDICTED: kelch domain-containing prote | 0.943 | 0.978 | 0.754 | 0.0 | |
| 449440586 | 668 | PREDICTED: kelch domain-containing prote | 0.937 | 0.961 | 0.778 | 0.0 | |
| 18423130 | 666 | kelch repeat-containing protein [Arabido | 0.947 | 0.974 | 0.751 | 0.0 | |
| 297792335 | 665 | kelch repeat-containing protein [Arabido | 0.945 | 0.974 | 0.755 | 0.0 | |
| 115459052 | 662 | Os04g0483600 [Oryza sativa Japonica Grou | 0.964 | 0.998 | 0.685 | 0.0 |
| >gi|118488318|gb|ABK95978.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/654 (80%), Positives = 589/654 (90%), Gaps = 2/654 (0%)
Query: 28 RRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILY 87
RRETKK+SPEDDIDAILLSIQKEEAKKK+VHVE+NV APSPRSNC+LNINPLK+TELILY
Sbjct: 28 RRETKKLSPEDDIDAILLSIQKEEAKKKDVHVEENVAAPSPRSNCTLNINPLKDTELILY 87
Query: 88 GGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSP 147
GGEFYNG+KT+VYGDLYRYDVEKQEWK++SSPNSPPPRSAHQAV+WKNYLYIFGGEFTSP
Sbjct: 88 GGEFYNGSKTFVYGDLYRYDVEKQEWKLVSSPNSPPPRSAHQAVAWKNYLYIFGGEFTSP 147
Query: 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRY 207
NQERFHHYKDFWMLDLKTNQWEQLN KG PSPRSGHRMVL+KHKII+FGGFYDTLREVRY
Sbjct: 148 NQERFHHYKDFWMLDLKTNQWEQLNFKGSPSPRSGHRMVLHKHKIILFGGFYDTLREVRY 207
Query: 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267
YNDL++FDLDQFKWQEIKP+ G+MWPS RSGFQFFVYQDEVFLYGGYSKEVS+DK+ SEK
Sbjct: 208 YNDLHIFDLDQFKWQEIKPKLGAMWPSARSGFQFFVYQDEVFLYGGYSKEVSSDKSISEK 267
Query: 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMS 327
GI+HSD+WSLDPRTWEW+KVKK GMPPGPRAGFSMCVHKKRA+LFGGVVDMEM+GDV+MS
Sbjct: 268 GIVHSDMWSLDPRTWEWNKVKKSGMPPGPRAGFSMCVHKKRAMLFGGVVDMEMEGDVMMS 327
Query: 328 LFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANE 387
LFLNELYGFQLDN RWYPLELRKEKSTKD+ KKSSEQ+ +S ++K + EE N+
Sbjct: 328 LFLNELYGFQLDNRRWYPLELRKEKSTKDRSKKSSEQR-TTSFDNKKYSNDMGEEPTPND 386
Query: 388 KDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVL-AAKSGGKPYESKKKSDMQKSLLP 446
DEN EY+EEA+ +ES+ID +S + + V DG L AAK GKP S+ K +Q S+L
Sbjct: 387 PDENLEYHEEAENIESSIDEISHNLTRKITVIDGSLSAAKLDGKPGTSEAKQILQNSVLS 446
Query: 447 EIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASESE 506
E VKPCGRINSCMVVG+D LY+YGGMMEI DQEITLDDLYSLNLSKLDEWKCIIPASESE
Sbjct: 447 ETVKPCGRINSCMVVGRDMLYIYGGMMEIRDQEITLDDLYSLNLSKLDEWKCIIPASESE 506
Query: 507 WVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVAII 566
WVEASE ED+D+DED S+ EG S+ + +DDDD+ D EAR+ +GSLQ+GDAVAII
Sbjct: 507 WVEASEDEDDDEDEDASDGEGGSDSNDETDDGEDDDDDNDVEARNNGSGSLQVGDAVAII 566
Query: 567 KGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQHT 626
KGE KN+RRKEKRARIEQIRANLGLSD+QRTP PGESLKDFY+RT++YWQMAAHEHTQHT
Sbjct: 567 KGEKKNLRRKEKRARIEQIRANLGLSDAQRTPTPGESLKDFYKRTNLYWQMAAHEHTQHT 626
Query: 627 GKELRKDGFDLAEARYRELKPILDELAVLEAEQKAEEAEGPETTSRKRGKKKNK 680
GKELRKDGFDLAEARY+ELKPILDELA+LEAEQKAEEAE ET+SRKRGKKKNK
Sbjct: 627 GKELRKDGFDLAEARYKELKPILDELAILEAEQKAEEAEEAETSSRKRGKKKNK 680
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456767|ref|XP_002276501.1| PREDICTED: kelch domain-containing protein 4 [Vitis vinifera] gi|297733624|emb|CBI14871.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/655 (79%), Positives = 594/655 (90%), Gaps = 7/655 (1%)
Query: 26 RARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELI 85
RARRE KKIS EDDIDAILLSIQKEEAKKKEVH+++NVPAP+PRSNCSL +NPLKETELI
Sbjct: 26 RARRENKKISEEDDIDAILLSIQKEEAKKKEVHIDENVPAPTPRSNCSLTMNPLKETELI 85
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
LYGGEFYNGNKT+VYGDLYR+D+EKQEWK+ISSPNSPPPRS+HQAV+WKNYLYIFGGEFT
Sbjct: 86 LYGGEFYNGNKTFVYGDLYRHDIEKQEWKLISSPNSPPPRSSHQAVAWKNYLYIFGGEFT 145
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
SPNQE FHHYKDFW+LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV
Sbjct: 146 SPNQECFHHYKDFWVLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
Query: 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
RY+NDL+VFDLDQFKWQEIKPR GSMWPS RSGFQFFV+QDE+FLYGGYSKEVS+DKN S
Sbjct: 206 RYFNDLHVFDLDQFKWQEIKPRLGSMWPSARSGFQFFVFQDEIFLYGGYSKEVSSDKNNS 265
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325
EKGI+HSD+WSLDPRTWEW+KVKK GMPPGPRAGFSMCVHKKRA+LFGGVVDME++GDV+
Sbjct: 266 EKGIVHSDMWSLDPRTWEWNKVKKSGMPPGPRAGFSMCVHKKRAVLFGGVVDMEVEGDVM 325
Query: 326 MSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDA 385
MSLFLNELYGFQLD HRWYPLELRKEKSTKDK+KKSS++K N + L K+ I+ E+ +
Sbjct: 326 MSLFLNELYGFQLDTHRWYPLELRKEKSTKDKVKKSSDKKYNGATLDNKIGSIDLEKCEE 385
Query: 386 NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLL 445
N+ D+N E +EEA ++ES+ID +S + ++ V+DG + KS G+P+ES + D+Q S+
Sbjct: 386 NDGDDNLESHEEAADLESSIDEISRHMTTNITVNDGGPSIKSDGRPHESGAQLDLQNSIS 445
Query: 446 PEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASES 505
EIVKPCGRIN MVVGKDTLY+YGGMME+ DQEITLDDLY LNLSKLDEWKCIIPAS+S
Sbjct: 446 SEIVKPCGRINCSMVVGKDTLYIYGGMMEVKDQEITLDDLYCLNLSKLDEWKCIIPASKS 505
Query: 506 EWVEA-SEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVA 564
EW+EA E ++++D++D +++ N GS+SDET DD++D EA+DG + SL+MGDAVA
Sbjct: 506 EWIEASEEEDEDEDEDDSEDEDCNSGSNSDET-----DDDDDVEAKDG-SRSLEMGDAVA 559
Query: 565 IIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ 624
IIKGEGKN+RRKEKRARIEQIRANLGLSDSQRTP+PGE+LKDFY+RT++YWQMAAHEHTQ
Sbjct: 560 IIKGEGKNLRRKEKRARIEQIRANLGLSDSQRTPIPGETLKDFYKRTNLYWQMAAHEHTQ 619
Query: 625 HTGKELRKDGFDLAEARYRELKPILDELAVLEAEQKAEEAEGPETTSRKRGKKKN 679
HTGKELRKDGFDLAEARYRELKPILDELA+LEAEQKAEEAEG ET+ RKRG KKN
Sbjct: 620 HTGKELRKDGFDLAEARYRELKPILDELAILEAEQKAEEAEGVETSMRKRGNKKN 674
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147781765|emb|CAN61297.1| hypothetical protein VITISV_027056 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2592), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/665 (77%), Positives = 594/665 (89%), Gaps = 12/665 (1%)
Query: 26 RARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELI 85
RARRE KKIS EDDIDAILLSIQKEEAKKKEVH+++NVPAP+PRSNCSL +NPLKETELI
Sbjct: 26 RARRENKKISEEDDIDAILLSIQKEEAKKKEVHIDENVPAPTPRSNCSLTMNPLKETELI 85
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
LYGGEFYNGNKT+VYGDLYR+D+EKQEWK+ISSPNSPPPRS+HQAV+WKNYLYIFGGEFT
Sbjct: 86 LYGGEFYNGNKTFVYGDLYRHDIEKQEWKLISSPNSPPPRSSHQAVAWKNYLYIFGGEFT 145
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
SPNQE FHHYKDFW+LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV
Sbjct: 146 SPNQEXFHHYKDFWVLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
Query: 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
RY+NDL+VFDLDQFKWQEIKPR GSMWPS RSGFQFFV+QDE+FLYGGYSKEVS+DKN S
Sbjct: 206 RYFNDLHVFDLDQFKWQEIKPRLGSMWPSARSGFQFFVFQDEIFLYGGYSKEVSSDKNNS 265
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325
EKGI+HSD+WSLDPRTWEW+KVKK GMPPGPRAGFSMCVHKKRA+LFGGVVDME++GDV+
Sbjct: 266 EKGIVHSDMWSLDPRTWEWNKVKKSGMPPGPRAGFSMCVHKKRAVLFGGVVDMEVEGDVM 325
Query: 326 MSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDA 385
MSLFLNELYGFQLD HRWYPLELRKEKSTKDK+KKSS++K N + L K+ I+ E+ +
Sbjct: 326 MSLFLNELYGFQLDTHRWYPLELRKEKSTKDKVKKSSDKKYNGATLDNKIGSIDLEKCEE 385
Query: 386 NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLL 445
N+ D+N E +EEA ++ES+ID +S + ++ V+DG + KS G+P+ES + D+Q S+
Sbjct: 386 NDGDDNLESHEEAADLESSIDEISRHMTTNITVNDGGPSIKSDGRPHESGAQLDLQNSIS 445
Query: 446 PEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASES 505
EIVKPCGRIN MVVGKDTLY+YGGMME+ DZEITLDDLY LNLSKLDEWKCIIPAS+S
Sbjct: 446 SEIVKPCGRINCSMVVGKDTLYIYGGMMEVKDZEITLDDLYCLNLSKLDEWKCIIPASKS 505
Query: 506 EWVEA-SEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAE----------ARDGDA 554
EW+EA E ++++D++D +++ N GS+SDET DDDD + E A+DG +
Sbjct: 506 EWIEASEEEDEDEDEDDSEDEDCNSGSNSDETDDDDDVERWYLELGETFCVSFNAKDG-S 564
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
SL+MGDAVAIIKGEGKN+RRKEKRARIEQIRANLGLSDSQRTP+PGE+LKDFY+RT++Y
Sbjct: 565 RSLEMGDAVAIIKGEGKNLRRKEKRARIEQIRANLGLSDSQRTPIPGETLKDFYKRTNLY 624
Query: 615 WQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELAVLEAEQKAEEAEGPETTSRKR 674
WQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELA+LEAEQKAEEAEG ET+ RKR
Sbjct: 625 WQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELAILEAEQKAEEAEGVETSMRKR 684
Query: 675 GKKKN 679
G KKN
Sbjct: 685 GNKKN 689
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540383|ref|XP_002511256.1| kelch repeat protein, putative [Ricinus communis] gi|223550371|gb|EEF51858.1| kelch repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/670 (77%), Positives = 592/670 (88%), Gaps = 7/670 (1%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTAKAEEKRARRETKK+SPEDDIDAILLSIQKEEAKKKEV VE++VPAPSPRSNC+L
Sbjct: 15 TERKTAKAEEKRARRETKKVSPEDDIDAILLSIQKEEAKKKEVLVEESVPAPSPRSNCTL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
NINP K+TELILYGGEFYNGNKT+VYGDLYRYDVEKQEWK +SSPNSPPPRSAHQAV+WK
Sbjct: 75 NINPSKDTELILYGGEFYNGNKTFVYGDLYRYDVEKQEWKRVSSPNSPPPRSAHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NYLYIFGGEFTSPNQERFHHYKDFW+LDLKTNQWEQLN KGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYLYIFGGEFTSPNQERFHHYKDFWVLDLKTNQWEQLNYKGCPSPRSGHRMVLYKHKIIL 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDLY+FDLDQFKWQEIKP+ G+MWPSPRSGFQFFVYQDE+FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLYIFDLDQFKWQEIKPKLGAMWPSPRSGFQFFVYQDEIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKE+S+DK+ S+KGI+HSD+WSLDPRTWEWSKVKK GMPPGPRAGFSMCVHKKRA+LFGG
Sbjct: 255 SKEISSDKSSSDKGIVHSDMWSLDPRTWEWSKVKKSGMPPGPRAGFSMCVHKKRAMLFGG 314
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVDMEM+GDV+MSLFLNELYGFQLDN RWYPLELRKEKSTKDKLKK EQ+ N + +K
Sbjct: 315 VVDMEMEGDVMMSLFLNELYGFQLDNCRWYPLELRKEKSTKDKLKKIPEQRCNGPDV-DK 373
Query: 375 LNPIEAEE---FDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKP 431
++ +E EE F N+ DEN +Y+ EA +ES I+ +S+ + ++ +DDG +K GK
Sbjct: 374 MSVMEMEETAAFPTND-DENQDYHGEAAGIESTINEISQIMKTNMDLDDGSSTSKLDGKA 432
Query: 432 YESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLS 491
SK K +Q S+ E+VKPCGRINSCMVVG+DTLY+YGGMMEI DQEITLDDLYSLNLS
Sbjct: 433 DASKAKMVLQNSVSSEVVKPCGRINSCMVVGRDTLYIYGGMMEIKDQEITLDDLYSLNLS 492
Query: 492 KLDEWKCIIPASESEWV-EASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEAR 550
KLDEW CIIPASESEW+ + + D++DD+ ++ + D+DDDD+EDAEA
Sbjct: 493 KLDEWNCIIPASESEWLEASEDEGDDEDDDSSEDECSCDDDDDETDEDNDDDDDEDAEAG 552
Query: 551 DGDAGSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRR 610
+G + SL++GDAVA+IKG KN+RRKEKRARIEQIRANLGLSDSQRTP+PGESL+DFYRR
Sbjct: 553 NGGSVSLKVGDAVAMIKGGKKNLRRKEKRARIEQIRANLGLSDSQRTPVPGESLRDFYRR 612
Query: 611 TSMYWQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELAVLEAEQKAEEAEGPETT 670
T++YWQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELA+LEAEQKAEE E T+
Sbjct: 613 TNLYWQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELAILEAEQKAEEQEAEPTS 672
Query: 671 SRKRGKKKNK 680
S KRG+KKNK
Sbjct: 673 S-KRGRKKNK 681
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508772|ref|XP_003523128.1| PREDICTED: kelch domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/667 (76%), Positives = 586/667 (87%), Gaps = 20/667 (2%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTA+AEEK+ARRETKK+SPEDDIDAILLSIQKEEAKKKEVHV+DNVPAPSPRSNCSL
Sbjct: 15 TERKTARAEEKKARRETKKLSPEDDIDAILLSIQKEEAKKKEVHVDDNVPAPSPRSNCSL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
+NPLKETELILYGGEFYNGNKT+VYGDLYRYDVEK EWK++SSPNSPPPRSAHQAV+WK
Sbjct: 75 TVNPLKETELILYGGEFYNGNKTFVYGDLYRYDVEKLEWKLVSSPNSPPPRSAHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NY+YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYVYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIL 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDL+VFDLDQFKWQEIKP+ G+MWP+ RSGFQ FVYQD++FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLFVFDLDQFKWQEIKPKPGAMWPTARSGFQLFVYQDDIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKEVS+DK+ SEKGI+HSD+WSLDP+TWEW+KVKK GMPPGPRAGFSMCVHK+RALLFGG
Sbjct: 255 SKEVSSDKSNSEKGIVHSDMWSLDPKTWEWNKVKKSGMPPGPRAGFSMCVHKRRALLFGG 314
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVD+E++GDV+MSLFLNELYGFQLD +RWYPLELRKEKSTKDKLKK + P+ K
Sbjct: 315 VVDIEVEGDVMMSLFLNELYGFQLDTNRWYPLELRKEKSTKDKLKKIEQNCPDDV---NK 371
Query: 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYES 434
+NP + EE+++ E+NID++S+ + +++ +DDG KS GK ES
Sbjct: 372 INPACTTREET----------EESEDEENNIDDISKNIASNMSIDDGETLTKSEGKAEES 421
Query: 435 KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
K D+Q SL +VKPCGRIN+CM VG+DTLY+YGGMMEI DQEITLDDLYSLNLSKLD
Sbjct: 422 SAKLDIQSSLPEVVVKPCGRINACMAVGRDTLYIYGGMMEIKDQEITLDDLYSLNLSKLD 481
Query: 495 EWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDA 554
EWKCIIPASESEWVEAS+ ++E++D+D+ E +G+ + DE +E+ E +
Sbjct: 482 EWKCIIPASESEWVEASDDDEENEDDDEDESDGDSLTDEDED-------DEEEEEEEAQN 534
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
S+Q+GDAVA+IKG GKN+RRKE+R RIEQIRA+LGLSDSQRTP PGESLKDFYRRT+MY
Sbjct: 535 ASVQVGDAVALIKGVGKNLRRKERRVRIEQIRASLGLSDSQRTPSPGESLKDFYRRTNMY 594
Query: 615 WQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELAVLEAEQKAEEAEGPETTSRKR 674
WQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELA+LEAEQKAEEAEGPET+++KR
Sbjct: 595 WQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELALLEAEQKAEEAEGPETSAKKR 654
Query: 675 GKKKNKN 681
GKKK +N
Sbjct: 655 GKKKTRN 661
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518912|ref|XP_003528120.1| PREDICTED: kelch domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 957 bits (2474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/667 (75%), Positives = 588/667 (88%), Gaps = 21/667 (3%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTA+AEEK+ARRETKK+SPEDDIDAILLSIQKEEAKKK+V V+DNVPAPSPRSNCSL
Sbjct: 15 TERKTARAEEKKARRETKKLSPEDDIDAILLSIQKEEAKKKDVQVDDNVPAPSPRSNCSL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
+NPLKETELILYGGEFYNGNKT+VYGDL+RYDVEK EWK++SSPNSPPPRSAHQAV+WK
Sbjct: 75 TVNPLKETELILYGGEFYNGNKTFVYGDLFRYDVEKLEWKLVSSPNSPPPRSAHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NY+YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYVYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIL 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDL+VFDLDQFKWQEIKP+ +MWP+ RSGFQ FVYQD++FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLFVFDLDQFKWQEIKPKPAAMWPTARSGFQLFVYQDDIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKEVS+DK+ SEKGI+HSD+WSLDP++WEW+KVKK GMPPGPRAGFSMCVHK+RALLFGG
Sbjct: 255 SKEVSSDKSNSEKGIVHSDMWSLDPKSWEWNKVKKSGMPPGPRAGFSMCVHKRRALLFGG 314
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVD+E++ DV+MSLFLNELYGFQLD +RWYPLELRKEKSTKDKLKK + P+ + +K
Sbjct: 315 VVDIEVEVDVMMSLFLNELYGFQLDTNRWYPLELRKEKSTKDKLKKIEQNCPDD--VDKK 372
Query: 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYES 434
+NP A + EE+D+ E++ID +S+ + +++ +DDG KS GKP ES
Sbjct: 373 INPACATREET----------EESDDEENSIDYISKNIASNMSIDDGETLTKSEGKPKES 422
Query: 435 KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
K D+Q S LPE+VKPCGRIN+CM VG+DTLY+YGGMMEI DQEITLDDLYSLNLSKLD
Sbjct: 423 SAKLDLQSS-LPEVVKPCGRINACMAVGRDTLYIYGGMMEIKDQEITLDDLYSLNLSKLD 481
Query: 495 EWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDA 554
EWKCIIPASESEWVEAS+ ++E+DD++D D ++ ++++++ ++A
Sbjct: 482 EWKCIIPASESEWVEASDDDEENDDDEDESDNDGSTDEDEDDEEEEEEEAQNA------- 534
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
S+Q+ DAVA+IKG GKN+RRKE+R+RIEQIRA+LGLSDSQRTP+PGESL+DFYRRT+MY
Sbjct: 535 -SVQVVDAVALIKGVGKNLRRKERRSRIEQIRASLGLSDSQRTPLPGESLRDFYRRTNMY 593
Query: 615 WQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELAVLEAEQKAEEAEGPETTSRKR 674
WQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELA+LEAEQKAEEAE PET+++KR
Sbjct: 594 WQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELALLEAEQKAEEAEAPETSAKKR 653
Query: 675 GKKKNKN 681
GKKK +N
Sbjct: 654 GKKKTRN 660
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440586|ref|XP_004138065.1| PREDICTED: kelch domain-containing protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/656 (77%), Positives = 581/656 (88%), Gaps = 14/656 (2%)
Query: 26 RARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELI 85
RARRE+KK+SPEDDIDAILLSIQKEEAKKKEVHVE+NVPAPSPRSNCSL INPLKETELI
Sbjct: 26 RARRESKKLSPEDDIDAILLSIQKEEAKKKEVHVEENVPAPSPRSNCSLTINPLKETELI 85
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
LYGGEFYNG KTYVYGDLYRYDVEK EWKVISSPNSPPPRSAHQAV+WKNYLYIFGGEFT
Sbjct: 86 LYGGEFYNGTKTYVYGDLYRYDVEKLEWKVISSPNSPPPRSAHQAVAWKNYLYIFGGEFT 145
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
SPNQERFHHYKDFW+LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV
Sbjct: 146 SPNQERFHHYKDFWVLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
Query: 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
RYYND+YVFDLDQ+KWQE+KP G+MWPSPRSGFQFFV+QDEVFLYGGY KE+ +DK S
Sbjct: 206 RYYNDMYVFDLDQYKWQEVKPSPGAMWPSPRSGFQFFVHQDEVFLYGGYFKEIQSDKGTS 265
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMK-GDV 324
E+G++H+D+WSLDPRTW+W+KVKK GMPPGPRAGFSMCVHK+RALLFGGVVDME++ GD
Sbjct: 266 ERGVVHADMWSLDPRTWQWNKVKKGGMPPGPRAGFSMCVHKRRALLFGGVVDMEVEGGDA 325
Query: 325 IMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFD 384
+MSLFLNELY FQ+DNHRWYPLELRKEKS K K+KK S+QK N A + +N E D
Sbjct: 326 MMSLFLNELYAFQIDNHRWYPLELRKEKSIKAKIKKISDQKDNEVAFDDNIN---EEVVD 382
Query: 385 ANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSL 444
+ + +E+ ME++ID +S + +SV +++G L SG K ES S + ++
Sbjct: 383 VGKTE--TPVMDESCSMETDIDEISHHISSSVSINNGGLETSSGKKQQES---SSNKNAV 437
Query: 445 LPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASE 504
LPE++KPCGRINSC+VVG+DTLY+YGGMMEI DQEITLDDLY+LNLSKLDEWKCIIPA+E
Sbjct: 438 LPEVIKPCGRINSCVVVGRDTLYIYGGMMEIKDQEITLDDLYALNLSKLDEWKCIIPATE 497
Query: 505 SEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVA 564
SEWVEASE EDE+DDED+SE++ N S++ G D DEED EA G+ GS ++GDAVA
Sbjct: 498 SEWVEASEDEDEEDDEDESENDDNSEGSNESDG---DSDEEDFEA--GNDGSRKVGDAVA 552
Query: 565 IIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ 624
+IKGEG+N+RRKEKRARIEQIRANLGLSDSQRTPMPGESL++FY+RT++YWQMAAHEHTQ
Sbjct: 553 LIKGEGRNLRRKEKRARIEQIRANLGLSDSQRTPMPGESLREFYKRTNLYWQMAAHEHTQ 612
Query: 625 HTGKELRKDGFDLAEARYRELKPILDELAVLEAEQKAEEAEGPETTSRKRGKKKNK 680
HTGKELRKDGFDLAE+RYRELKPILDELA+LEAEQKAEEAE PET+SRKRGKKKNK
Sbjct: 613 HTGKELRKDGFDLAESRYRELKPILDELAILEAEQKAEEAEAPETSSRKRGKKKNK 668
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18423130|ref|NP_568723.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|15724228|gb|AAL06507.1|AF412054_1 AT5g50310/MXI22_1 [Arabidopsis thaliana] gi|332008541|gb|AED95924.1| kelch repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/668 (75%), Positives = 576/668 (86%), Gaps = 19/668 (2%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTAKA+EK+ARRE KK+SPEDDIDAILL+IQKEEAKKKEVHVE+NV APSPRSNCSL
Sbjct: 15 TERKTAKADEKKARREGKKLSPEDDIDAILLNIQKEEAKKKEVHVEENVAAPSPRSNCSL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
INPLKETELILYGGEFYNG KTYVYGDLYRYDVEKQEWK++SSPNSPPPRS+HQAV+WK
Sbjct: 75 TINPLKETELILYGGEFYNGQKTYVYGDLYRYDVEKQEWKLVSSPNSPPPRSSHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NYLYIFGGEFTSPNQERFHHYKDFWMLD+KTNQWEQLNLKGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDVKTNQWEQLNLKGCPSPRSGHRMVLYKHKIII 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDLYVFDLDQ+KWQEIKP+ G+MWP+ RSGFQFFVYQDE+FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLYVFDLDQYKWQEIKPKPGAMWPTARSGFQFFVYQDEIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKE + + SEKGI+H+DLWSLDPRTWEW+KVKKIGMPP RAGFS+CVHKKRALLFGG
Sbjct: 255 SKE-VSSEKSSEKGIVHADLWSLDPRTWEWNKVKKIGMPPSSRAGFSVCVHKKRALLFGG 313
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVDMEM+GDV+MSLFLNELYGFQLDN RWYP+ELRKEKS+KDK KK+ E KP +S
Sbjct: 314 VVDMEMEGDVMMSLFLNELYGFQLDNRRWYPIELRKEKSSKDKAKKTLEAKPVASN---- 369
Query: 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYES 434
+E D+ E+DE+ E+ D + S+ D +SE + ++ V DG + KS +
Sbjct: 370 ----NDDEMDSTEEDESLAMIEQTDGVGSS-DGISERMATNLTV-DGNRSDKSKALQ-GA 422
Query: 435 KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
K + D Q S+ E+VKPCGRINSCMVVGKDTLY+YGGMMEI D+E+TLDDLYSLNLSKLD
Sbjct: 423 KTRLDPQVSVSEEVVKPCGRINSCMVVGKDTLYIYGGMMEIKDKEVTLDDLYSLNLSKLD 482
Query: 495 EWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDA 554
EWKCIIP +E+EWVE S+ E+ D+D+D+ + E + DD+DD+E+ EA D D
Sbjct: 483 EWKCIIPTTETEWVEVSDDEEGDEDDDEDDSE----DEGNSEESDDEDDDEEVEAMDVD- 537
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
GS+++G VA+IKG+GK++RRKEKRARIEQIRANLGLSDSQRTP+PGE+LKDFY+RT+MY
Sbjct: 538 GSVKVGVVVAMIKGQGKSLRRKEKRARIEQIRANLGLSDSQRTPVPGETLKDFYKRTNMY 597
Query: 615 WQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELAVLEAEQKAEEAEGPE--TTSR 672
WQMAA+EHTQHTGKELRKDGFDLAE RY ELKPILDELA+LEAEQKAEEAEGPE ++SR
Sbjct: 598 WQMAAYEHTQHTGKELRKDGFDLAETRYLELKPILDELAILEAEQKAEEAEGPEASSSSR 657
Query: 673 KRGKKKNK 680
K G K K
Sbjct: 658 KGGIAKKK 665
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792335|ref|XP_002864052.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297309887|gb|EFH40311.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2414), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/668 (75%), Positives = 576/668 (86%), Gaps = 20/668 (2%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTAKA+EK+ARRE KK+SPEDDIDAILLSIQKEEAKKKEVHVE+NV APSPRSNCSL
Sbjct: 15 TERKTAKADEKKARREGKKLSPEDDIDAILLSIQKEEAKKKEVHVEENVAAPSPRSNCSL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
INPLKETELILYGGEFYNG KTYVYGDLYRYDV+KQEWK ISSPNSPPPRS+HQAV+WK
Sbjct: 75 TINPLKETELILYGGEFYNGQKTYVYGDLYRYDVDKQEWKSISSPNSPPPRSSHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NYLYIFGGEFTSPNQERFHHYKDFWMLD+KTNQWEQLNLKGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDVKTNQWEQLNLKGCPSPRSGHRMVLYKHKIII 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDLYVFDLDQ+KWQEIKP+ G+MWP+ RSGFQFFVYQDE+FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLYVFDLDQYKWQEIKPKPGAMWPTARSGFQFFVYQDEIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKE + + SEKGI+H+DLWSLDPRTWEW+KVKKIGMPP RAGFS+CVHKKRALLFGG
Sbjct: 255 SKE-VSSEKSSEKGIVHADLWSLDPRTWEWNKVKKIGMPPSSRAGFSVCVHKKRALLFGG 313
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVDMEM+GDV+MSLFLNELYGFQLDN RWYP+ELRKEKSTK K KK+ E KP +S
Sbjct: 314 VVDMEMEGDVMMSLFLNELYGFQLDNRRWYPIELRKEKSTKYKAKKNLEAKPVASN---- 369
Query: 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYES 434
+E D+ E+DE++ E++D + S+ D +S+ + + V DG + KS +
Sbjct: 370 ----NDDEMDSTEEDESSAMIEQSDGVGSS-DGISDRMAAGLTV-DGNRSDKSKALQ-GA 422
Query: 435 KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
K + D Q S+ E++KPCGRINSCMVVGKDTLY+YGGMMEI D+E+TLDDLYSLNLSKLD
Sbjct: 423 KARLDPQVSVSEEVIKPCGRINSCMVVGKDTLYIYGGMMEIKDKEVTLDDLYSLNLSKLD 482
Query: 495 EWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDA 554
EWKCIIPA+E+EWVE SE E+ D+DED+ + E G S + DD+E+ EA D D
Sbjct: 483 EWKCIIPATETEWVEVSEDEEGDEDEDEDDSEDEGNSEESDE-----DDDEEVEAMDVD- 536
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
GS+++G+ VA+IKGEGK++RRKEKRARIEQIRANLGLSDSQRTP+PGE+LKDFY+RT+MY
Sbjct: 537 GSVKVGEVVAMIKGEGKSLRRKEKRARIEQIRANLGLSDSQRTPVPGETLKDFYKRTNMY 596
Query: 615 WQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELAVLEAEQKAEEAEGPE--TTSR 672
WQMAA+EHTQHTGKELRKDGFDLAE RY ELKPILDELA+LEAEQKAEEAEGPE ++SR
Sbjct: 597 WQMAAYEHTQHTGKELRKDGFDLAETRYLELKPILDELAILEAEQKAEEAEGPEASSSSR 656
Query: 673 KRGKKKNK 680
K G K K
Sbjct: 657 KGGIAKKK 664
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115459052|ref|NP_001053126.1| Os04g0483600 [Oryza sativa Japonica Group] gi|113564697|dbj|BAF15040.1| Os04g0483600 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/686 (68%), Positives = 554/686 (80%), Gaps = 25/686 (3%)
Query: 1 MGKKNKKAGKGKEKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVE 60
MGKK KK KGKEKTERKTAK EEKRARRE +K+ EDDIDAIL SIQKEEAKKKEVH++
Sbjct: 1 MGKKQKKPRKGKEKTERKTAKGEEKRARREARKVGEEDDIDAILRSIQKEEAKKKEVHID 60
Query: 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN 120
+NVPAPSPRSNCSL INPLK+TEL+LYGGEFYNG+KT+VYGDLYRYDVEK EWK++SSPN
Sbjct: 61 ENVPAPSPRSNCSLTINPLKDTELVLYGGEFYNGSKTFVYGDLYRYDVEKNEWKLVSSPN 120
Query: 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180
SPPPRSAHQ V+WKN +Y+FGGEFTSPNQERFHHYKDFW LDLKTNQWEQ+ KGCPS R
Sbjct: 121 SPPPRSAHQTVAWKNNIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQILAKGCPSAR 180
Query: 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240
SGHRMVLYKHKI++FGGFYDTLREVRYYNDL+VFDLD FKW+EIKPR G +WPSPRSGFQ
Sbjct: 181 SGHRMVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLDNFKWEEIKPRPGCLWPSPRSGFQ 240
Query: 241 FFVYQDEVFLYGGYSKE-VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299
VYQD+++LYGGY KE VS+DK+ SEKG +H+D+W+LDPRTWEW+KVKK GMPPGPRAG
Sbjct: 241 LMVYQDQIYLYGGYFKEVVSSDKSASEKGTVHADMWTLDPRTWEWNKVKKTGMPPGPRAG 300
Query: 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLK 359
FSMCVHKKRA+LFGGVVDME++GDVIMS+F+NELYGFQLDNHRWYPLELRK+K K+K K
Sbjct: 301 FSMCVHKKRAVLFGGVVDMEIEGDVIMSMFMNELYGFQLDNHRWYPLELRKDKPAKNKTK 360
Query: 360 KSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVD 419
++P+++ E+ NE+DE E E +S + +S + S+ ++
Sbjct: 361 DIKRKEPSNN----------VEDNLGNEEDEIME-DSETTGGQSEVHGVSNHLTKSLTLN 409
Query: 420 DGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQE 479
K+G + +LPE VKP GRIN+C+ VGKDTLY+YGGMME+ D+E
Sbjct: 410 ------KAGSGNSSDILSDSTTQEVLPEAVKPGGRINACLAVGKDTLYLYGGMMELKDRE 463
Query: 480 ITLDDLYSLNLSKLDEWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDD 539
ITLDD+YSLNLSKLDEWKCIIPASESEW+E SE ED++DD+DD + + ++ DD
Sbjct: 464 ITLDDMYSLNLSKLDEWKCIIPASESEWLEISEDEDDEDDDDDDNENDSEDDANQTDEDD 523
Query: 540 DDDDEEDAEARDGDAGSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPM 599
++ DE+ + D M AV++IKGE KN+RRKEKRARIEQIR LGLSDSQRTPM
Sbjct: 524 EESDEDAEKNVD-------MSTAVSLIKGERKNLRRKEKRARIEQIRVMLGLSDSQRTPM 576
Query: 600 PGESLKDFYRRTSMYWQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELAVLEAEQ 659
PGESLKDFY+RT MYWQMAA+EHTQHTGKELRKDGFDLAE RY+ELKPILDELAVLEAEQ
Sbjct: 577 PGESLKDFYKRTDMYWQMAAYEHTQHTGKELRKDGFDLAETRYKELKPILDELAVLEAEQ 636
Query: 660 KAEEAEGPETTSRKRGKKKNKNLAIK 685
KAEE T+S+K +K + ++
Sbjct: 637 KAEEEASASTSSKKDTRKSKQKSGMR 662
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 685 | ||||||
| TAIR|locus:2177542 | 666 | AT5G50310 [Arabidopsis thalian | 0.674 | 0.693 | 0.722 | 1.1e-242 | |
| MGI|MGI:2384569 | 584 | Klhdc4 "kelch domain containin | 0.446 | 0.523 | 0.408 | 8.3e-83 | |
| ASPGD|ASPL0000047740 | 677 | AN2090 [Emericella nidulans (t | 0.350 | 0.354 | 0.378 | 2.4e-82 | |
| CGD|CAL0001573 | 638 | orf19.5009 [Candida albicans ( | 0.496 | 0.532 | 0.370 | 1.4e-75 | |
| UNIPROTKB|Q5AKW8 | 638 | KEL3 "Putative uncharacterized | 0.496 | 0.532 | 0.370 | 1.4e-75 | |
| SGD|S000006184 | 651 | KEL3 "Cytoplasmic protein of u | 0.633 | 0.666 | 0.307 | 1.4e-60 | |
| POMBASE|SPCC1223.06 | 1147 | tea1 "cell end marker Tea1" [S | 0.344 | 0.205 | 0.286 | 7.8e-18 | |
| DICTYBASE|DDB_G0268860 | 943 | rngB "Kelch repeat-containing | 0.332 | 0.241 | 0.261 | 6.5e-17 | |
| DICTYBASE|DDB_G0293006 | 1127 | gefF "Ras guanine nucleotide e | 0.303 | 0.184 | 0.262 | 5.5e-16 | |
| TAIR|locus:2014400 | 341 | ESP "epithiospecifier protein" | 0.385 | 0.774 | 0.266 | 1e-15 |
| TAIR|locus:2177542 AT5G50310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1843 (653.8 bits), Expect = 1.1e-242, Sum P(2) = 1.1e-242
Identities = 344/476 (72%), Positives = 390/476 (81%)
Query: 34 ISPEDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPLKETELILYGGEFYN 93
+SPEDDIDAILL+IQ +NV APSPRSNCSL INPLKETELILYGGEFYN
Sbjct: 34 LSPEDDIDAILLNIQKEEAKKKEVHVEENVAAPSPRSNCSLTINPLKETELILYGGEFYN 93
Query: 94 GNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFH 153
G KTYVYGDLYRYDVEKQEWK++SSPNSPPPRS+HQAV+WKNYLYIFGGEFTSPNQERFH
Sbjct: 94 GQKTYVYGDLYRYDVEKQEWKLVSSPNSPPPRSSHQAVAWKNYLYIFGGEFTSPNQERFH 153
Query: 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213
HYKDFWMLD+KTNQWEQLNLKGCPSPRSGHRMVLYKHKII+FGGFYDTLREVRYYNDLYV
Sbjct: 154 HYKDFWMLDVKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIIFGGFYDTLREVRYYNDLYV 213
Query: 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSD 273
FDLDQ+KWQEIKP+ G+MWP+ RSGFQFFVYQDE+FLYGGYSKEVS++K+ SEKGI+H+D
Sbjct: 214 FDLDQYKWQEIKPKPGAMWPTARSGFQFFVYQDEIFLYGGYSKEVSSEKS-SEKGIVHAD 272
Query: 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNEL 333
LWSLDPRTWEW+KVKKIGMPP RAGFS+CVHKKRALLFGGVVDMEM+GDV+MSLFLNEL
Sbjct: 273 LWSLDPRTWEWNKVKKIGMPPSSRAGFSVCVHKKRALLFGGVVDMEMEGDVMMSLFLNEL 332
Query: 334 YGFQLDNHRWYPLELRXXXXXXXXXXXXXEQKPNSSALHEKLNPIEAEEFDAXXXXXXXX 393
YGFQLDN RWYP+ELR E KP +S ++++ E +E
Sbjct: 333 YGFQLDNRRWYPIELRKEKSSKDKAKKTLEAKPVASNNDDEMDSTEEDE---------SL 383
Query: 394 XXXXXXXXXSNIDNLSECVPNSVIVDDGVLAAKSGGKPYE-SKKKSDMQKSLLPEIVKPC 452
+ D +SE + ++ VD G + KS K + +K + D Q S+ E+VKPC
Sbjct: 384 AMIEQTDGVGSSDGISERMATNLTVD-GNRSDKS--KALQGAKTRLDPQVSVSEEVVKPC 440
Query: 453 GRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASESEWV 508
GRINSCMVVGKDTLY+YGGMMEI D+E+TLDDLYSLNLSKLDEWKCIIP +E+EWV
Sbjct: 441 GRINSCMVVGKDTLYIYGGMMEIKDKEVTLDDLYSLNLSKLDEWKCIIPTTETEWV 496
|
|
| MGI|MGI:2384569 Klhdc4 "kelch domain containing 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 8.3e-83, Sum P(3) = 8.3e-83
Identities = 132/323 (40%), Positives = 192/323 (59%)
Query: 37 EDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNK 96
E+D++A++ Q P PSPR N SL+ +P K+ ELIL+GGE++NG K
Sbjct: 33 EEDLEALIAHFQTLDAKKTQVTETP-CPPPSPRLNASLSAHPEKD-ELILFGGEYFNGQK 90
Query: 97 TYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV---SWKNYLYIFGGEFTSPNQERFH 153
T++Y +LY Y + K W + P PP R AHQAV L++FGGEF SP+ E+F+
Sbjct: 91 TFMYNELYIYSIRKDTWTKVDIPGPPPRRCAHQAVVVPQGGGQLWVFGGEFASPDGEQFY 150
Query: 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213
HYKD W+L L T WEQ+ G PS RSGHRMV +K ++I+FGGF+++ R+ YY+D+Y
Sbjct: 151 HYKDLWVLHLATKTWEQIRSTGGPSGRSGHRMVAWKRQLILFGGFHESARDYIYYSDVYT 210
Query: 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHS 272
F LD F+W ++ P G+ P+PRSG V Q + +YGGYSK+ K +KG HS
Sbjct: 211 FSLDTFQWSKLSPS-GA-GPTPRSGCLMAVTPQGSIAIYGGYSKQ--RVKKDVDKGTQHS 266
Query: 273 DLWSLDPRT-----WEWSKVKKIGMPPGPRAGFSMCVHKKRALL-FGGVVDMEMKGDVIM 326
D++ L P W W+++ G+ P R+GFS+ V +L FGGV D E + + +
Sbjct: 267 DMFLLKPAEGGEGKWAWTRINPSGVKPTARSGFSVAVAPNHQILVFGGVCDEEEE-ESLE 325
Query: 327 SLFLNELYGFQLDNHRWYPLELR 349
F ++LY + RW+ +L+
Sbjct: 326 GSFFSDLYIYDAAKSRWFAAQLK 348
|
|
| ASPGD|ASPL0000047740 AN2090 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-82, Sum P(4) = 2.4e-82
Identities = 97/256 (37%), Positives = 143/256 (55%)
Query: 37 ED-DIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGN 95
ED D+DAIL + P PSPRS+ ++ +P EL+++GGE+++G
Sbjct: 42 EDADLDAILAQYAEEQARFLKVTEVVSGP-PSPRSSATVLASPSNRNELLIFGGEYFDGT 100
Query: 96 KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNY--LYIFGGEFTSPNQERFH 153
Y +L+ Y +++ EW+ ++SPNSP PRS H N +Y+FGGEF+SP Q F+
Sbjct: 101 LATFYNNLFVYLIDRGEWREVTSPNSPLPRSGHAWCRGGNTGGIYLFGGEFSSPKQGTFY 160
Query: 154 HYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212
HY DFW LD T +W ++ KG P RSGHRM +K+ II+FGGF DT ++ +Y DL+
Sbjct: 161 HYNDFWHLDPSTREWSRIETKGKGPPARSGHRMTYFKNYIILFGGFQDTSQQTKYLQDLW 220
Query: 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK-EVSTDKN-QSEKG-- 268
++D ++ W S P PRS F ++ LYGGYS+ +V+ +S KG
Sbjct: 221 IYDCSKYTWYNPVLSTASQKPDPRSSSSFLPHESGAVLYGGYSRVKVTAGAGGKSAKGGP 280
Query: 269 -------IIHSDLWSL 277
++H D W L
Sbjct: 281 QRMTMKPMVHQDTWFL 296
|
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| CGD|CAL0001573 orf19.5009 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
Identities = 130/351 (37%), Positives = 190/351 (54%)
Query: 37 EDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPL-KETELILYGGEFYNGN 95
+DDIDAIL P+ R N ++ NPL + ELIL+GGE +G
Sbjct: 46 DDDIDAILEKYAKEQLEFTEIKIEICDHHPTKRLNPTMVSNPLHNKRELILFGGENTDGG 105
Query: 96 KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGGEFTSPNQERFHH 154
+ Y DLY Y ++ W+ ISS NSP PRS+H S + + +FGGEF+SP Q F+H
Sbjct: 106 HSKFYNDLYTYSIDNDTWRKISSKNSPLPRSSHAMCSHPSGIILMFGGEFSSPKQSTFYH 165
Query: 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214
Y D W+LD T +W++++ K PS RSGHR+ ++K+ II+ GGF D Y ND+++F
Sbjct: 166 YGDTWILDADTKEWQKIDSKKGPSARSGHRLAVWKNYIILHGGFRDLGTMTTYLNDVWLF 225
Query: 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
D+ +FKW +++ P RSG + +YGGY+K + K +KG + +D
Sbjct: 226 DVTEFKWTQVEFPPNHPIPDARSGHSLLPCSEGAVIYGGYTK-IKAKKGL-QKGKVLNDC 283
Query: 275 WSL----DPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFL 330
W L DP+ + + KK G P PR G S+ HK R +LFGGV D E + + S F
Sbjct: 284 WILKMKSDPKAVRFERRKKQGTLPSPRVGCSLVYHKNRGMLFGGVYDFEESEENLDSEFY 343
Query: 331 NELYGFQLDNHRWYPLELRXXXXXXXXXXXXXEQKPNSSALHEKLNPIEAE 381
N+LY + ++++RWY L L+ ++K L E LN I A+
Sbjct: 344 NQLYTYHIESNRWYNLHLKPQRKKKKETI---KEKTRDEDLEEILNSILAK 391
|
|
| UNIPROTKB|Q5AKW8 KEL3 "Putative uncharacterized protein KEL3" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
Identities = 130/351 (37%), Positives = 190/351 (54%)
Query: 37 EDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPL-KETELILYGGEFYNGN 95
+DDIDAIL P+ R N ++ NPL + ELIL+GGE +G
Sbjct: 46 DDDIDAILEKYAKEQLEFTEIKIEICDHHPTKRLNPTMVSNPLHNKRELILFGGENTDGG 105
Query: 96 KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGGEFTSPNQERFHH 154
+ Y DLY Y ++ W+ ISS NSP PRS+H S + + +FGGEF+SP Q F+H
Sbjct: 106 HSKFYNDLYTYSIDNDTWRKISSKNSPLPRSSHAMCSHPSGIILMFGGEFSSPKQSTFYH 165
Query: 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214
Y D W+LD T +W++++ K PS RSGHR+ ++K+ II+ GGF D Y ND+++F
Sbjct: 166 YGDTWILDADTKEWQKIDSKKGPSARSGHRLAVWKNYIILHGGFRDLGTMTTYLNDVWLF 225
Query: 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
D+ +FKW +++ P RSG + +YGGY+K + K +KG + +D
Sbjct: 226 DVTEFKWTQVEFPPNHPIPDARSGHSLLPCSEGAVIYGGYTK-IKAKKGL-QKGKVLNDC 283
Query: 275 WSL----DPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFL 330
W L DP+ + + KK G P PR G S+ HK R +LFGGV D E + + S F
Sbjct: 284 WILKMKSDPKAVRFERRKKQGTLPSPRVGCSLVYHKNRGMLFGGVYDFEESEENLDSEFY 343
Query: 331 NELYGFQLDNHRWYPLELRXXXXXXXXXXXXXEQKPNSSALHEKLNPIEAE 381
N+LY + ++++RWY L L+ ++K L E LN I A+
Sbjct: 344 NQLYTYHIESNRWYNLHLKPQRKKKKETI---KEKTRDEDLEEILNSILAK 391
|
|
| SGD|S000006184 KEL3 "Cytoplasmic protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 145/471 (30%), Positives = 227/471 (48%)
Query: 37 EDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPL-KETELILYGGEFYNGN 95
+ D+D IL S +V PS R++ + NP + EL ++GGEF +
Sbjct: 48 DQDLDEILSSFSKKQIELEHVDIT-SVEKPSCRTHPLMFANPQHNKHELFIFGGEFTDPE 106
Query: 96 K--TYVYGDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEFTSPNQERF 152
T+ Y DLY Y ++ WK S N+P PRS A AV + GGEF+SP Q +F
Sbjct: 107 TKLTHFYNDLYSYSIKNNSWKKYVSQNAPLPRSSAAVAVHPSGIALLHGGEFSSPKQSKF 166
Query: 153 HHYKDFWMLDLKTNQWEQLNLKG---CPSPRSGHRMVLYKHKIIVFGGFYDTLR-EVRYY 208
+HY D W+ D ++ +L G PS RSGHR++ +K+ I+FGGF D + Y
Sbjct: 167 YHYSDTWLFDCVERKFTKLEFGGRDSSPSARSGHRIIAWKNYFILFGGFRDLGNGQTSYL 226
Query: 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268
NDL+ FD+ +KW +++ + P RSG F + L GGY K ++ + KG
Sbjct: 227 NDLWCFDISTYKWTKLET---NSKPDARSGHCFIPTDNSAILMGGYCKIIAKNNKNLMKG 283
Query: 269 IIHSDLWSL----DPRTWEWSKVKKIGMPPGPRAGFSMCVHKK-RALLFGGVVDMEMKGD 323
I +D W L DP+ W+W K+K P PR G+S + K+ +++ FGGV D++ +
Sbjct: 284 KILNDAWKLNLTPDPKKWQWEKLKNFKNQPSPRVGYSFNLWKQNKSVAFGGVYDLQETEE 343
Query: 324 VIMSLFLNELYGFQLDNHRWYPLELRXXXXXXXXXXXXXEQKPNSSALHEKLNPIEAEEF 383
+ S+F N+LY F L+ ++W L ++ + P +S K N + +E
Sbjct: 344 SLESVFYNDLYMFHLELNKWSKLRIKPQRQTNS------KNSPATSK--RKSNKDQEKEL 395
Query: 384 DAXXXXXXXXXXXXXXXXXSNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKS 443
N DN S PNS+ DD + E D Q+
Sbjct: 396 Q-DLLNSILAKSNLNDDDDDNDDN-STTGPNSI--DDD--------EDNEDDSDLDNQED 443
Query: 444 LLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
+ P R N+ V D+L++Y G+ E+ +++ ++ YS++L+KLD
Sbjct: 444 ITISNQLPHPRFNAATCVVGDSLFIYSGVWELGEKDYPINSFYSIDLNKLD 494
|
|
| POMBASE|SPCC1223.06 tea1 "cell end marker Tea1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 7.8e-18, P = 7.8e-18
Identities = 77/269 (28%), Positives = 125/269 (46%)
Query: 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISS-PNSPPPRSAHQAVSWKNYLYIFG 141
E+ ++GG + + DL+ ++ ++ + S +P PR H ++ N +FG
Sbjct: 94 EIYIFGGV---ASDSQPKNDLWVLNLATSQFTSLRSLGETPSPRLGHASILIGNAFIVFG 150
Query: 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYD 200
G +R + ++L+ + W++ N G PS R GH + KI +FGG
Sbjct: 151 GLTNHDVADRQDN--SLYLLNTSSLVWQKANASGARPSGRYGHTISCLGSKICLFGG--- 205
Query: 201 TLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW--PSP-RSGFQFFVYQDEVFLYGGYSKE 257
L + Y+NDL FDL+ + + S+ P P R+G F + D+++++GG
Sbjct: 206 RLLDY-YFNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKLYIFGG---- 260
Query: 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317
TD +DLW P+ WSKV+ G+ P PRAG + V + +FGG
Sbjct: 261 --TDGAN-----FFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAASVVEGILYVFGG--- 310
Query: 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
D FLN+LY F+L + WY L
Sbjct: 311 --RASD---GTFLNDLYAFRLSSKHWYKL 334
|
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| DICTYBASE|DDB_G0268860 rngB "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 6.5e-17, Sum P(2) = 6.5e-17
Identities = 69/264 (26%), Positives = 128/264 (48%)
Query: 92 YNGNKTYVYGDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTS---P 147
+ GN + D+ Y++ W K+ + N+P R H AV +++ + +
Sbjct: 34 FGGNSNRAFNDIQYYNIFNNSWSKIEAVGNAPSERYGHSAVLYQSQSRPYSDSYQIIFFG 93
Query: 148 NQERFHHYKDFWMLDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204
+ + D +L + +N+ W+Q+ K R+GH V+Y+ ++VFGG + +
Sbjct: 94 GRATSKPFSDINILYVNSNRSFIWKQVTTKSIEG-RAGHTAVVYRQNLVVFGGHNN--HK 150
Query: 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFF-VYQDEVFLYGGYSKEVSTDKN 263
+YYN + +F L+ +W++ G + PS R+ F V +++F++GGY
Sbjct: 151 SKYYNSVLLFSLESNEWRQ--QVCGGVIPSARATHSTFQVNNNKMFIFGGYD-------- 200
Query: 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC-VHKKRALLFGGVVDMEMKG 322
+K ++D++ LD TW W KV+ G PP PR+G S + + ++FGG
Sbjct: 201 -GKK--YYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSATMIQNNKLMIFGGC-----GS 252
Query: 323 DVIMSLFLNELYGFQLDN---HRW 343
D S FLN+++ ++ +RW
Sbjct: 253 D---SNFLNDIHILHIEGANEYRW 273
|
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| DICTYBASE|DDB_G0293006 gefF "Ras guanine nucleotide exchange factor" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 61/232 (26%), Positives = 111/232 (47%)
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
L+GG +G+ T D Y + + W +++ ++P R+ H V + N +YIFGG
Sbjct: 215 LFGGTLPDGSYT---NDFYTFQFAIKAWTILTFGSAPSIRTRHTGVLYNNSMYIFGGY-- 269
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFY--DTL 202
SP+ + D ++ T W ++ +G PSPR GH V+ +IVFGG T
Sbjct: 270 SPSGPK----NDIYVFSFDTQTWSEVQTEGTKPSPRYGHTAVVESGHMIVFGGISCDQTT 325
Query: 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262
++ ND++ +LD +W ++ + PSPR+ +++ ++++GG ++
Sbjct: 326 KQQTVNNDIFSLNLDTKQWSQV---LSTCPPSPRTHHTATMHKGNMYVFGGQDQQ----S 378
Query: 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
NQ E I+H W+ + W ++ G PR+ S + + + GG
Sbjct: 379 NQVED-IVHCYTWASN----SWKSIQFEGSSMTPRSDHSAVLFQDSIFISGG 425
|
|
| TAIR|locus:2014400 ESP "epithiospecifier protein" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 77/289 (26%), Positives = 125/289 (43%)
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
P PRS S I + + +L +GGE NK ++ DLY +D Q W + P
Sbjct: 20 PGPRS--SHGIAAVGD-KLYSFGGEL-TPNK-HIDKDLYVFDFNTQTWSIAQPKGDAPTV 74
Query: 126 SAH--QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE---QLNLKGCPSPR 180
S + V+ +YIFGG + N E F Y D T++W +L+ G P R
Sbjct: 75 SCLGVRMVAVGTKIYIFGGRDENRNFENFRSY------DTVTSEWTFLTKLDEVGGPEAR 128
Query: 181 SGHRMVLYKHKIIVFGGFYD--TLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
+ H M ++ + VFGG T+ + + +++ KW ++ P G + R G
Sbjct: 129 TFHSMASDENHVYVFGGVSKGGTMNTPTRFRTIEAYNIADGKWAQL-PDPGDNFEK-RGG 186
Query: 239 FQFFVYQDEVFL-YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297
F V Q ++++ YG + V K+ E + DP + +W++V+ G P R
Sbjct: 187 AGFAVVQGKIWVVYGFATSIVPGGKDDYESNAVQF----YDPASKKWTEVETTGAKPSAR 242
Query: 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
+ F+ V K ++F G V ++ G NE Y + W L
Sbjct: 243 SVFAHAVVGKYIIIFAGEVWPDLNGHYGPGTLSNEGYALDTETLVWEKL 291
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XV.1950.1 | SubName- Full=Putative uncharacterized protein; (679 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00640202 | hypothetical protein (1181 aa) | • | 0.497 | |||||||
 | estExt_Genewise1_v1.C_LG_VII2715 | hypothetical protein (380 aa) | • | 0.491 | |||||||
 | gw1.86.17.1 | hypothetical protein (573 aa) | • | 0.478 | |||||||
 | gw1.I.4832.1 | hypothetical protein (422 aa) | • | 0.474 | |||||||
 | estExt_fgenesh4_pg.C_LG_XV0629 | hypothetical protein (314 aa) | • | 0.460 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 685 | |||
| pfam13422 | 99 | pfam13422, DUF4110, Domain of unknown function (DU | 6e-29 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 6e-17 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 2e-15 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 1e-11 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 2e-09 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 6e-09 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 4e-08 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 1e-06 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 1e-06 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 2e-06 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 5e-06 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 7e-06 | |
| pfam02724 | 583 | pfam02724, CDC45, CDC45-like protein | 7e-06 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 1e-05 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 2e-05 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 3e-05 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 5e-05 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 6e-05 | |
| TIGR03548 | 323 | TIGR03548, mutarot_permut, cyclically-permuted mut | 6e-05 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 7e-05 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 8e-05 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 1e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 1e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 1e-04 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 1e-04 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 1e-04 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 2e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 7e-04 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 7e-04 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 9e-04 | |
| pfam05327 | 554 | pfam05327, RRN3, RNA polymerase I specific transcr | 9e-04 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 0.002 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 0.002 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 0.002 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 0.003 | |
| pfam06213 | 282 | pfam06213, CobT, Cobalamin biosynthesis protein Co | 0.003 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 0.004 |
| >gnl|CDD|222117 pfam13422, DUF4110, Domain of unknown function (DUF4110) | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-29
Identities = 42/97 (43%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 587 ANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ---HTGKELRKDGFDLAEARYR 643
GL DS TP P ESL+DF+ RTS YWQ A E + +GKEL+KD FDLAE RY
Sbjct: 1 EQPGLDDSLPTPRPFESLRDFFARTSAYWQEIAMESLRDAELSGKELKKDAFDLAEERYW 60
Query: 644 ELKPILDELAVLEAEQKAEEAEGPETTSRKRGKKKNK 680
EL+ L L E EQ E + G + +
Sbjct: 61 ELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGR 97
|
This is a family that is found predominantly at the C-terminus of Kelch-containing proteins. However, the exact function of this region is not known. Length = 99 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 6e-17
Identities = 76/287 (26%), Positives = 132/287 (45%), Gaps = 27/287 (9%)
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
P PR CS I + + +L +GGE N+ ++ DLY +D W I+ N PR
Sbjct: 20 PGPR--CSHGIAVVGD-KLYSFGGEL-KPNE-HIDKDLYVFDFNTHTWS-IAPANGDVPR 73
Query: 126 SAH---QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE---QLNLKGCPSP 179
+ + V+ LYIFGG +++R + DF+ D N+W +L+ +G P
Sbjct: 74 ISCLGVRMVAVGTKLYIFGGR----DEKR--EFSDFYSYDTVKNEWTFLTKLDEEGGPEA 127
Query: 180 RSGHRMVLYKHKIIVFGGFYD--TLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237
R+ H M ++ + VFGG ++ + + +++ KW ++ P G + R
Sbjct: 128 RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQL-PDPGENF-EKRG 185
Query: 238 GFQFFVYQDEVFL-YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP 296
G F V Q ++++ YG + + K+ E + DP + +W++V+ G P
Sbjct: 186 GAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQF----FDPASGKWTEVETTGAKPSA 241
Query: 297 RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343
R+ F+ V K ++FGG V ++KG + NE Y + W
Sbjct: 242 RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288
|
Length = 341 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 2e-15
Identities = 73/273 (26%), Positives = 115/273 (42%), Gaps = 32/273 (11%)
Query: 55 KEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK 114
K + VE P R CS I + ++ +GGEF + LY +D+E + W
Sbjct: 152 KWIKVEQKGEGPGLR--CSHGIAQVG-NKIYSFGGEFTPNQP--IDKHLYVFDLETRTWS 206
Query: 115 VISSPNSPPPRS--AHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172
+ + P S + VS + LY+FGG S Y F+ D TN+W+ L
Sbjct: 207 ISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS------RQYNGFYSFDTTTNEWKLLT 260
Query: 173 -LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231
++ P+PRS H M + + VFGG T R L +++ KW S
Sbjct: 261 PVEEGPTPRSFHSMAADEENVYVFGGVSATAR----LKTLDSYNIVDKKWFHCSTPGDSF 316
Query: 232 WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291
S R G V Q +V++ G++ G D+ DP +W++V+ G
Sbjct: 317 --SIRGGAGLEVVQGKVWVVYGFN------------GCEVDDVHYYDPVQDKWTQVETFG 362
Query: 292 MPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDV 324
+ P R+ F+ K ++FGG + M+ V
Sbjct: 363 VRPSERSVFASAAVGKHIVIFGGEIAMDPLAHV 395
|
Length = 470 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 1e-11
Identities = 66/247 (26%), Positives = 102/247 (41%), Gaps = 36/247 (14%)
Query: 94 GNKTYVYG---------DLYRYDVEKQEWKVISSPN---SPPPRSAHQAVSWKNYLYIFG 141
G K Y++G D Y YD K EW ++ + P R+ H S +N++Y+FG
Sbjct: 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFG 144
Query: 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP------RSGHRMVLYKHKIIVF 195
G + ++ ++ +W QL P P R G + + KI V
Sbjct: 145 GVSKGGLMKTPERFRTIEAYNIADGKWVQL-----PDPGENFEKRGGAGFAVVQGKIWVV 199
Query: 196 GGFYDTL----REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLY 251
GF ++ + N + FD KW E++ PS RS F V + ++
Sbjct: 200 YGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAK--PSARSVFAHAVVGKYIIIF 257
Query: 252 GGYSKEVSTD-KNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR---AGFSMCVHKK 307
GG EV D K G + ++ ++LD T W K+ + G P PR A + V+ K
Sbjct: 258 GG---EVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGK 314
Query: 308 RALLFGG 314
LL G
Sbjct: 315 NGLLMHG 321
|
Length = 341 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-09
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188
+Y+FGG R D W+ DL TN WE+ L P PR+GH +
Sbjct: 1 GGKIYVFGGL--GDGGTR---LNDLWVYDLDTNTWEK--LGDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 6e-09
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 177 PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219
P PR+ H V+ +I ++GG+ T + +D+YV L F
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGY--TSGNGQSSDDVYVLSLPGF 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-08
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 122 PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN 166
P PR+ H AV +Y++GG +TS N + D ++L L
Sbjct: 2 PVPRANHCAVVVGGEIYLYGG-YTSGNGQ---SSDDVYVLSLPGF 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-06
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY 244
KI VFGG D NDL+V+DLD W+++ P PR+G V
Sbjct: 1 GGKIYVFGGLGDG---GTRLNDLWVYDLDTNTWEKLGD-----LPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-06
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 124 PRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL 171
PR+ H + S LY+FGGE D W+ DL TN W +L
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENED-----GSVLSDVWVFDLSTNTWTRL 44
|
Length = 49 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 59/289 (20%), Positives = 104/289 (35%), Gaps = 58/289 (20%)
Query: 84 LILYGGEFYNGNK--TYVYGDLYRYDVEKQEWKVISSPNSPPPRS--AHQAVSWKN-YLY 138
L ++GG ++ V+ D+YRYD +K W+ + ++ P S N Y
Sbjct: 66 LYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKL---DTRSPVGLLGASGFSLHNGQAY 122
Query: 139 IFGG-----------------EFTSPNQERFHHY-----------KDFWMLDLKTNQWEQ 170
GG + + P + Y K+ D TNQW
Sbjct: 123 FTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWR- 181
Query: 171 LNLKGCP-SPRSGHRMVLYKHKIIVFGG-FYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228
NL P +G +V +K+++ G LR Y+F + +W ++ P
Sbjct: 182 -NLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVK--QYLFTGGKLEWNKLPPLP 238
Query: 229 GSMWPSPR--SGFQFFVYQDEVFLYGGYS-----KEVSTDKNQSEKGII---HSDLWSLD 278
S +G + + + GG + + K + +G+I S++++LD
Sbjct: 239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD 298
Query: 279 PRTWEWSKVKKIGMPPGPRA-GFSMCVHKKRALLFGGVVDMEMKGDVIM 326
W K+G P A G S+ + L+ G + DV +
Sbjct: 299 NGKW-----SKVGKLPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYL 342
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-06
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS 132
++ ++GG T DL+ YD++ W+ + P PR+ H A
Sbjct: 3 KIYVFGG--LGDGGTR-LNDLWVYDLDTNTWEKLGDL--PGPRAGHAATV 47
|
Length = 48 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-06
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305
+++++GG + G +DLW D T W +K+G PGPRAG + V
Sbjct: 2 GKIYVFGGLG----------DGGTRLNDLWVYDLDTNTW---EKLGDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 476 NDQEITLDDLYSLNLSKLDEWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDE 535
+DQ + DD ++E P + + E +D+DD+E D EDE + S DE
Sbjct: 95 SDQVVIFDD------GDIEEELQDEPRYDDAY-RDLEEDDDDDEESDEEDEESSKSEDDE 147
Query: 536 TGDDDDDDEEDAEARDGDAGSLQMGDAVAIIKGEGKNVRRKEKRARIEQ 584
DDDDDD++ A + +EKRA +E
Sbjct: 148 DDDDDDDDDDIATRERSLERRRRR-------------REWEEKRAELEF 183
|
CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-05
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180
PR+ H AVS +Y+FGG + D +T WE+L P+PR
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSK-----ASNKVLVYDPETGSWEKLP--PLPTPR 50
|
Length = 50 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-05
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 451 PCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNL 490
P R N C VV +Y+YGG + + DD+Y L+L
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGY--TSGNGQSSDDVYVLSL 39
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 28/199 (14%)
Query: 92 YNGNKTYV----YGDLYRYDVEKQEWKVISS-----PNSPPPRSAHQAVSWKNYLYIFGG 142
N+ YV Y + VE WK S P PR V+ N +Y+ GG
Sbjct: 340 VFNNRIYVIGGIYNSISLNTVES--WKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGG 397
Query: 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGF-YDT 201
+ K L TN+W + + P G + + KI V GG Y
Sbjct: 398 IS-----KNDELLKTVECFSLNTNKWSKGS--PLPISHYGGCAIYHDGKIYVIGGISYID 450
Query: 202 LREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTD 261
+V YN + ++ KW E+ S PR ++ +++++ GG E
Sbjct: 451 NIKV--YNIVESYNPVTNKWTEL-----SSLNFPRINASLCIFNNKIYVVGGDKYEYYI- 502
Query: 262 KNQSEKGIIHSDLWSLDPR 280
N+ E ++ W+L +
Sbjct: 503 -NEIEVYDDKTNTWTLFCK 520
|
Length = 534 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 47/193 (24%)
Query: 156 KDFWMLDLK--TNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGF--YDTLREVRYYND 210
++ LDLK + W+++ + G P R+ K+ VFGG ++ + ++D
Sbjct: 29 TSWYKLDLKKPSKGWQKIADFPGGP--RNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDD 86
Query: 211 LYVFDLDQFKWQEIKPRFGSMWPSPR-----SGFQFFVYQDEVFLYGGYSKE-------- 257
+Y +D + WQ++ SP SGF ++ + + GG +K
Sbjct: 87 VYRYDPKKNSWQKL------DTRSPVGLLGASGFS--LHNGQAYFTGGVNKNIFDGYFAD 138
Query: 258 -VSTDKNQS-EKGIIHS-------------DLWSLDPRTWEWSKVKKIGMPPG-PRAGFS 301
+ DK+ + +I + ++ S DP T +W + G P AG +
Sbjct: 139 LSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL---GENPFLGTAGSA 195
Query: 302 MCVHKKRALLFGG 314
+ + LL G
Sbjct: 196 IVHKGNKLLLING 208
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 6e-05
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282
P PR+ V E++LYGGY+ S G D++ L +
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGYT---------SGNGQSSDDVYVLSLPGF 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 61/282 (21%), Positives = 104/282 (36%), Gaps = 48/282 (17%)
Query: 83 ELILYGGEFY------NGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNY 136
+++ GG + G K Y +Y D E K + + P + ++S +N
Sbjct: 15 RILVAGGCNFPEKPVAEGGKKKYYKGIYTLDDEDSNLKWVKAGQLPYAAAYGASISTENG 74
Query: 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMV-LYKHKIIV 194
+Y GG S + E F + + L E L ++ PS P + YK +
Sbjct: 75 IYYIGG---SNSSESF---SSVYRITLD-ESKEALIIETLPSLPFAMDNGSATYKDGKLY 127
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP-SPRSGFQFFVYQDEVFLYGG 253
GG + N Y F+L+ +W+E P F P +PR Q+E++++GG
Sbjct: 128 VGG---GNANGKPSNKFYCFNLETQEWEE-LPDF----PGAPRVQPVCVKLQNELYVFGG 179
Query: 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA---GFSMCVHKKRAL 310
TD + P+T W KV P + S+ +++ L
Sbjct: 180 GDNIAYTDG------------YKYSPKTGTWEKVADPLSDGEPISLLGAASIAINESLLL 227
Query: 311 LFGG---------VVDMEMKGDVIMSLFLNELYGFQLDNHRW 343
GG V+ + D + + E + D +RW
Sbjct: 228 CIGGFNYDVFNDAVIRLATMKDESLKSYAAEYFLHPPDWYRW 269
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 7e-05
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226
PRSG +V+ KI V GG+ + + + V+D + W ++
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGG----QSLSSVEVYDPETNTWSKLPS 44
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 8e-05
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 13/63 (20%)
Query: 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294
PR+G +++++GGYS + + DP T W K+ P
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSN----------GSKASNKVLVYDPETGSWE---KLPPLP 47
Query: 295 GPR 297
PR
Sbjct: 48 TPR 50
|
Length = 50 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS 121
PR+ + + + L L+GGE +G V D++ +D+ W + S S
Sbjct: 1 PRAYHTST--SIGDGRLYLFGGENEDG---SVLSDVWVFDLSTNTWTRLPSLPS 49
|
Length = 49 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 179 PRSGHRMV-LYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226
PR+ H + ++ +FGG + + +D++VFDL W +
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENE---DGSVLSDVWVFDLSTNTWTRLPS 46
|
Length = 49 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 1e-04
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226
PR+GH V KI VFGG+ + + N + V+D + W+++ P
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSN---GSKASNKVLVYDPETGSWEKLPP 45
|
Length = 50 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 31/221 (14%)
Query: 95 NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHH 154
+ YD + + W + P PR + N +Y+ GG + S +
Sbjct: 305 KNNLSVNSVVSYDTKTKSWNKV--PELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTV-- 360
Query: 155 YKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213
+ W ++W + L PR +V + I V GG + +
Sbjct: 361 --ESW--KPGESKWREEPPLI---FPRYNPCVVNVNNLIYVIGGISKNDELL---KTVEC 410
Query: 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSD 273
F L+ KW GS P G + ++++ GG S N I+
Sbjct: 411 FSLNTNKW-----SKGSPLPISHYGGCAIYHDGKIYVIGGISYI----DNIKVYNIVE-- 459
Query: 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
S +P T +W+++ + PR S+C+ + + GG
Sbjct: 460 --SYNPVTNKWTELSSLNF---PRINASLCIFNNKIYVVGG 495
|
Length = 534 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 94 GNKTYVYG------DLYRYDVEKQE--WKVISS-PNSPPPRSAHQAVSWKNYLYIFGGEF 144
N YV G Y+ D+ W I++ P PR A LY+FGG
Sbjct: 38 NNTVYV-GLGSAGTSWYKLDLNAPSKGWTKIAAFPG--GPREQAVAAFIDGKLYVFGGIG 94
Query: 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS--GHRMV-LYKHKIIVFGG 197
+ ++ + D + D KTN W++L+ + SP GH V L+ K + GG
Sbjct: 95 KTNSEGSPQVFDDVYKYDPKTNSWQKLDTR---SPVGLAGHVAVSLHNGKAYITGG 147
|
Length = 376 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL 171
PRS V +Y+ GG Q + D +TN W +L
Sbjct: 1 PRSGAGVVVLGGKIYVIGG--YDGGQ----SLSSVEVYDPETNTWSKL 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 7e-04
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 235 PRSGFQ-FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287
PR+ + ++L+GG + E G + SD+W D T W+++
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGEN----------EDGSVLSDVWVFDLSTNTWTRL 44
|
Length = 49 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 7e-04
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG 175
PR H +V LY+ GG T D W+LD +TN W +L
Sbjct: 1 PRYPHASVVVGGKLYVVGG-STGLGDLSS---SDLWVLDPETNVWTELPALP 48
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-04
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Query: 209 NDLYVFDLDQF--KWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
Y DL + WQ+I +P PR+ +++++GG K S Q
Sbjct: 29 TSWYKLDLKKPSKGWQKIAD-----FPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQ- 82
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC-VHKKRALLFGGV 315
+ D++ DP+ W K+ P G S +H +A GGV
Sbjct: 83 ----VFDDVYRYDPKKNSWQKLDTR--SPVGLLGASGFSLHNGQAYFTGGV 127
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-04
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 517 DDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVA 564
DD +D+ E+ D+ D D D++D E D + V+
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVS 270
|
This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 94 GNKTYVYG------DLYRYDVEKQE--WKVISSPNSP-PPRSAHQAVSWKNYLYIFGGEF 144
G+K YV G Y+ D++K W+ I + P PR+ A + LY+FGG
Sbjct: 17 GDKVYV-GLGSAGTSWYKLDLKKPSKGWQKI--ADFPGGPRNQAVAAAIDGKLYVFGGIG 73
Query: 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS--GHRMV-LYKHKIIVFGGF 198
+ ++ + D + D K N W++L+ SP G L+ + GG
Sbjct: 74 KANSEGSPQVFDDVYRYDPKKNSWQKLD---TRSPVGLLGASGFSLHNGQAYFTGGV 127
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.002
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226
PR H V+ K+ V GG +DL+V D + W E+
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSS--SDLWVLDPETNVWTELPA 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 509 EASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARD 551
E +G D++D+EDD +D D + +++D+++ED++ D
Sbjct: 325 EEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDED 367
|
Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 26/205 (12%)
Query: 350 KEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLS 409
STK +L E K L K ++ K+E E E + ID +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAK-----SKSKGFITKEEIKEALESKKKTPEQIDQVL 56
Query: 410 ECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVY 469
+ V D + K ++ K+ K+ KD L
Sbjct: 57 IFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKA-------------PAKKKLKDELDSS 103
Query: 470 GGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNG 529
+ N + D Y ++ L++ + + ++ + +D+DDDEDD ED
Sbjct: 104 KKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDED---- 159
Query: 530 GSSSDETGDDDDDDEEDAEARDGDA 554
D+ D DD+DEE EA++ +
Sbjct: 160 ----DDDDDVDDEDEEKKEAKELEK 180
|
Length = 509 |
| >gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 11/56 (19%), Positives = 29/56 (51%)
Query: 509 EASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVA 564
A ++ED+D+ +++ + G + D ++ DA + + ++G ++ +A A
Sbjct: 218 SADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASA 273
|
This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 209 NDLYVFDLDQF--KWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
Y DL+ W +I +P PR +++++GG K S Q
Sbjct: 50 TSWYKLDLNAPSKGWTKIAA-----FPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQ- 103
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315
+ D++ DP+T W K+ P G ++ +H +A + GGV
Sbjct: 104 ----VFDDVYKYDPKTNSWQKLDTRS-PVGLAGHVAVSLHNGKAYITGGV 148
|
Length = 376 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 685 | |||
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 100.0 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 99.98 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.98 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 99.97 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.97 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.97 | |
| PF13422 | 96 | DUF4110: Domain of unknown function (DUF4110) | 99.96 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 99.96 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.81 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.76 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.62 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.58 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 99.03 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 98.99 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.84 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.78 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 98.77 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.72 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.71 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.7 | |
| PLN02772 | 398 | guanylate kinase | 98.68 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.68 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.68 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.64 | |
| PLN02772 | 398 | guanylate kinase | 98.63 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.6 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.57 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 98.48 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 98.34 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.25 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.17 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 97.99 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 97.83 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.55 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.54 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.46 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.14 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.04 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 97.03 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.01 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 96.95 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.63 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 96.56 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 96.55 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 95.95 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.68 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 95.61 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 95.49 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 95.46 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 95.39 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 95.31 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 95.31 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 95.22 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 95.21 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 95.15 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 95.13 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 95.02 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 94.86 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.86 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 94.68 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 94.62 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 94.37 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.35 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 94.15 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 94.14 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 94.13 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 94.06 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 93.96 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 93.64 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 93.39 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 93.37 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 92.98 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 92.79 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 92.76 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.63 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 92.43 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.32 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 92.27 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 92.03 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.02 | |
| PF12217 | 367 | End_beta_propel: Catalytic beta propeller domain o | 91.55 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 91.11 | |
| PTZ00421 | 493 | coronin; Provisional | 91.1 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 90.69 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 90.65 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 90.34 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 89.68 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 89.44 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 89.34 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 89.1 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 89.09 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 88.74 | |
| PTZ00421 | 493 | coronin; Provisional | 88.6 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 88.53 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 88.33 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 88.32 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 87.85 | |
| PF10446 | 458 | DUF2457: Protein of unknown function (DUF2457); In | 87.37 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 87.17 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 86.84 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 86.75 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 86.15 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 84.74 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 84.16 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 84.02 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 83.45 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 83.27 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 82.06 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 81.78 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 81.75 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 81.7 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 81.23 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 80.14 |
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-88 Score=689.10 Aligned_cols=480 Identities=45% Similarity=0.764 Sum_probs=388.5
Q ss_pred CCCCCCC--CCCCcchhHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhhceeEEEeecCCCCCCCCcceEEEEec
Q 005655 1 MGKKNKK--AGKGKEKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINP 78 (685)
Q Consensus 1 m~k~~k~--~~~~~~k~~~k~~k~~~k~~~k~~~~~~~~edi~~~l~~~~~~~~~~~~~~~~~~~~~P~~R~~~s~~~~p 78 (685)
||||.|| ++++++|+++|++||..++.|| ++++.|+..|...++..+++.-..+....+++|+||.+++++++|
T Consensus 1 MgKK~Kk~kkgk~aek~a~K~dkK~akr~kk----l~~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nP 76 (521)
T KOG1230|consen 1 MGKKNKKDKKGKGAEKTAAKQDKKFAKRKKK----LNEELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANP 76 (521)
T ss_pred CCccccCcccccchhhhHHHHHHHHHhhhhh----cCcccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeecc
Confidence 9998774 5666688888888877766644 466666677777788887777566666889999999999999999
Q ss_pred cCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC-CEEEEEcCccCCCCCccccccCe
Q 005655 79 LKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 79 ~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
.+ ++||||||++++|.++++||+||+||+.+++|+++.+++.|+||++|++|++. |.+|||||++.+++|.+|+||.|
T Consensus 77 ek-eELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD 155 (521)
T KOG1230|consen 77 EK-EELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKD 155 (521)
T ss_pred Cc-ceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhh
Confidence 87 69999999999999999999999999999999999999999999999999996 89999999999999999999999
Q ss_pred EEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcc
Q 005655 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (685)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs 237 (685)
+|+||+.+++|+++...|.|+||+||+|++|+++|+|||||+++.+++.|+||||+||+.+++|+.+.+. +..|.||+
T Consensus 156 ~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps--ga~PtpRS 233 (521)
T KOG1230|consen 156 LWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS--GAGPTPRS 233 (521)
T ss_pred eeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC--CCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 55899999
Q ss_pred ceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC-----ceeEEeecCCCCCCCcceeEEEEE-CCeEE
Q 005655 238 GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-----WEWSKVKKIGMPPGPRAGFSMCVH-KKRAL 310 (685)
Q Consensus 238 ~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-----~~W~~~~~~g~~P~~R~g~s~~~~-~~~iy 310 (685)
||++++. .+.|||+|||++. ..++...+|..|+|+|.|+|.+ +.|+++.+.|..|+||+|++++++ +++.|
T Consensus 234 Gcq~~vtpqg~i~vyGGYsK~--~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal 311 (521)
T KOG1230|consen 234 GCQFSVTPQGGIVVYGGYSKQ--RVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKAL 311 (521)
T ss_pred cceEEecCCCcEEEEcchhHh--hhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceE
Confidence 9999999 9999999999988 6888999999999999999988 899999999999999999999999 56999
Q ss_pred EecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccch
Q 005655 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDE 390 (685)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (685)
+|||+++.++.++++++.|+||||.||+..|+|+...+.+.++.... +|..++...+.+.+. -...+ .-|-
T Consensus 312 ~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S~~~~--~r~~~Kd~~k~~~~~----~~G~~---tkd~ 382 (521)
T KOG1230|consen 312 FFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKSPATS--RRRSRKDQEKELQRP----TVGPN---TKDL 382 (521)
T ss_pred EecceecccccchhhhhhhhhhhhheecccchhhHhhhccCCCCccc--cccccccccccccCc----ccCCC---cccc
Confidence 99999999999999999999999999999999999888666554332 222223333322211 00000 0000
Q ss_pred hhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEc
Q 005655 391 NAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYG 470 (685)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~G 470 (685)
+... ++.++.-....+.+..+.........+..+.. ........+.--|+||.++.++|..++|||+|
T Consensus 383 e~~~----------v~k~v~~~~d~l~i~v~v~~~g~~~~p~s~~e--~s~~~~~e~~~~~~pr~d~~~~v~~G~~~i~g 450 (521)
T KOG1230|consen 383 EVQA----------VDKAVCPTTDSLFIYVGVWEPGEADYPESEDE--ASREGDREPDEGEFPRMDDELSVKVGVLYIGG 450 (521)
T ss_pred ccee----------cceeeeecCCceEEEeecCCCCCCCCcccccc--cccccCCCCCCCCCccCCCccCcccceEEecC
Confidence 0000 01111111112222222111122222221111 11111111222699999999999999999999
Q ss_pred CeeeccCeeeeeecccccccCCCCccEEeccCCh--hhhhhc
Q 005655 471 GMMEINDQEITLDDLYSLNLSKLDEWKCIIPASE--SEWVEA 510 (685)
Q Consensus 471 G~~e~g~re~tl~D~y~ldL~kld~w~~~~~~~~--~~w~~~ 510 (685)
|+|+.+|++.||.|||+|||+++..|++|.+++. .||.+.
T Consensus 451 Gi~ee~d~q~tl~dfyal~~hr~~~~K~L~~~sfe~~E~re~ 492 (521)
T KOG1230|consen 451 GIFEERDWQPTLRDFYALDLHRNEKGKQLKTKSFELCEWRER 492 (521)
T ss_pred CCcccccccchHHHHhhhhhhhhhhhhhhccCCchhhhhhhh
Confidence 9999999999999999999999999999999876 589754
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=377.64 Aligned_cols=273 Identities=27% Similarity=0.575 Sum_probs=230.0
Q ss_pred cCCCCCCCcceeEEEEEC--CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEEC-CEEE
Q 005655 117 SSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK-HKII 193 (685)
Q Consensus 117 ~s~~~P~~R~~ha~v~~~--~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~-~~ly 193 (685)
.+..+|.||++.++++.. +.|++|||++.+... .+.||++|.||+.+++|..+.....|.||++|.+|++. |.||
T Consensus 59 ~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqk--T~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~ 136 (521)
T KOG1230|consen 59 TSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQK--THVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILW 136 (521)
T ss_pred ccCCCCCCCCCcceeeccCcceeEEecceeeccee--EEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEE
Confidence 344458899999999984 689999999887544 57899999999999999999887789999999999995 8999
Q ss_pred EEccccCCCCcee--eeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCcee
Q 005655 194 VFGGFYDTLREVR--YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (685)
Q Consensus 194 v~GG~~~~~~~~~--~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 271 (685)
||||-.....+.. .+.|+|.||+.+++|+++.... .|.||+||-|+++..+|+||||+... ...-.++
T Consensus 137 ~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g---~PS~RSGHRMvawK~~lilFGGFhd~-------nr~y~Yy 206 (521)
T KOG1230|consen 137 LFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG---GPSPRSGHRMVAWKRQLILFGGFHDS-------NRDYIYY 206 (521)
T ss_pred EeccccCCcchhhhhhhhheeeeeeccchheeeccCC---CCCCCccceeEEeeeeEEEEcceecC-------CCceEEe
Confidence 9999765443333 5789999999999999999873 39999999999999999999998754 3445789
Q ss_pred eeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCC-----CcEEE
Q 005655 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-----HRWYP 345 (685)
Q Consensus 272 ~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t-----~~W~~ 345 (685)
||+|+||+.+.+|+++.+.|.-|.||+||.+++. .|.|||+||++......+...+...+|+|.+++++ ..|.+
T Consensus 207 NDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~k 286 (521)
T KOG1230|consen 207 NDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTK 286 (521)
T ss_pred eeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEee
Confidence 9999999999999999999989999999999999 99999999998766555666788899999999998 67776
Q ss_pred EEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeeccccccc
Q 005655 346 LELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAA 425 (685)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (685)
+...+
T Consensus 287 vkp~g--------------------------------------------------------------------------- 291 (521)
T KOG1230|consen 287 VKPSG--------------------------------------------------------------------------- 291 (521)
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 65521
Q ss_pred cCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecC-EEEEEcCeeeccC-----eeeeeecccccccCCCCccEEe
Q 005655 426 KSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD-TLYVYGGMMEIND-----QEITLDDLYSLNLSKLDEWKCI 499 (685)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~-~Lyi~GG~~e~g~-----re~tl~D~y~ldL~kld~w~~~ 499 (685)
+-|.||.+.+.+|..+ .-|.|||++..-. .-..+||||.|||.. ++|...
T Consensus 292 -----------------------~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~-nrW~~~ 347 (521)
T KOG1230|consen 292 -----------------------VKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTR-NRWSEG 347 (521)
T ss_pred -----------------------CCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheeccc-chhhHh
Confidence 1599999999988775 8999999984211 113599999999988 888765
Q ss_pred c
Q 005655 500 I 500 (685)
Q Consensus 500 ~ 500 (685)
.
T Consensus 348 q 348 (521)
T KOG1230|consen 348 Q 348 (521)
T ss_pred h
Confidence 3
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=376.21 Aligned_cols=281 Identities=23% Similarity=0.409 Sum_probs=218.3
Q ss_pred hhceeEEEeecCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCC-CCCC-ccee
Q 005655 51 EAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPP-RSAH 128 (685)
Q Consensus 51 ~~~~~~~~~~~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~~-R~~h 128 (685)
+..|..+.. ....+|.||.+|+++++ ++.||||||..... ....+++|+||+.+++|..++++. .|.+ +.+|
T Consensus 6 ~~~W~~~~~-~~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 6 QGGWIKVEQ-KGGKGPGPRCSHGIAVV---GDKLYSFGGELKPN--EHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred CCeEEEecC-CCCCCCCCCCcceEEEE---CCEEEEECCccCCC--CceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 344555443 33447899999999999 89999999963221 235689999999999999887653 2332 4489
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccC---CCCCCCccceEEEECCEEEEEccccCCCC--
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK---GCPSPRSGHRMVLYKHKIIVFGGFYDTLR-- 203 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~---g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~-- 203 (685)
++++++++||||||.... ..++++++||+.+++|+.++.. +.|.+|.+|++++++++||||||+...+.
T Consensus 80 ~~~~~~~~iyv~GG~~~~------~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~ 153 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEK------REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMK 153 (341)
T ss_pred EEEEECCEEEEECCCCCC------CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccC
Confidence 999999999999997543 2468999999999999998762 12889999999999999999999864321
Q ss_pred ceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 204 EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 204 ~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
....++++++||+.+++|+.++.+ +..|.+|.+|++++++++|||+||.... ...+. .....++++++||+.+++
T Consensus 154 ~~~~~~~v~~yd~~~~~W~~l~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~--~~~gG-~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 154 TPERFRTIEAYNIADGKWVQLPDP--GENFEKRGGAGFAVVQGKIWVVYGFATS--ILPGG-KSDYESNAVQFFDPASGK 228 (341)
T ss_pred CCcccceEEEEECCCCeEeeCCCC--CCCCCCCCcceEEEECCeEEEEeccccc--cccCC-ccceecCceEEEEcCCCc
Confidence 122468999999999999999876 3346899999999999999999998642 10000 011236789999999999
Q ss_pred eEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 284 WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 284 W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
|+.+...+..|.+|.+|++++++++||||||........+...+...|+||+||+.+++|+.+..
T Consensus 229 W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 229 WTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred EEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 99998877789999999999999999999997543222121224567899999999999998764
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=386.48 Aligned_cols=259 Identities=25% Similarity=0.446 Sum_probs=214.6
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCC-CCC-CcceeEEEEECCEEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPP-PRSAHQAVSWKNYLY 138 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~-~R~~ha~v~~~~~iy 138 (685)
....+|.||.+|+++++ ++.||||||..... ....+++|+||+.+++|..++.+. .|. +|.+|++++++++||
T Consensus 158 ~~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~~--~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lY 232 (470)
T PLN02193 158 QKGEGPGLRCSHGIAQV---GNKIYSFGGEFTPN--QPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLY 232 (470)
T ss_pred cCCCCCCCccccEEEEE---CCEEEEECCcCCCC--CCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEE
Confidence 33457899999999999 89999999963222 225678999999999999876542 343 367899999999999
Q ss_pred EEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 139 vfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
||||.... ..++++|+||+.+++|+.+.+.+ .|.+|++|++++++++||||||+... .+++++++||+.
T Consensus 233 vfGG~~~~------~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~----~~~~~~~~yd~~ 302 (470)
T PLN02193 233 VFGGRDAS------RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT----ARLKTLDSYNIV 302 (470)
T ss_pred EECCCCCC------CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC----CCcceEEEEECC
Confidence 99997643 24799999999999999998732 28999999999999999999998643 257899999999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCc
Q 005655 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (685)
Q Consensus 218 t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R 297 (685)
+++|+.++.+ +..|.+|.+|++++++++|||+||+... .++++++||+.+++|+.+..++..|.+|
T Consensus 303 t~~W~~~~~~--~~~~~~R~~~~~~~~~gkiyviGG~~g~------------~~~dv~~yD~~t~~W~~~~~~g~~P~~R 368 (470)
T PLN02193 303 DKKWFHCSTP--GDSFSIRGGAGLEVVQGKVWVVYGFNGC------------EVDDVHYYDPVQDKWTQVETFGVRPSER 368 (470)
T ss_pred CCEEEeCCCC--CCCCCCCCCcEEEEECCcEEEEECCCCC------------ccCceEEEECCCCEEEEeccCCCCCCCc
Confidence 9999998764 3457899999999999999999998543 3688999999999999999888889999
Q ss_pred ceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 298 ~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.+|++++++++||||||....+.........++|++|+||+.+++|+.+..
T Consensus 369 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 369 SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 999999999999999998653322222224567899999999999998765
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=319.22 Aligned_cols=261 Identities=23% Similarity=0.450 Sum_probs=222.8
Q ss_pred CCCcceEEEEeccCCCEEEEEcCeecCCCce--eeeccEEEEEcCCCcEEEecCC-----------CCCCCcceeEEEEE
Q 005655 67 SPRSNCSLNINPLKETELILYGGEFYNGNKT--YVYGDLYRYDVEKQEWKVISSP-----------NSPPPRSAHQAVSW 133 (685)
Q Consensus 67 ~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~--~~~ndv~~yd~~~~~W~~l~s~-----------~~P~~R~~ha~v~~ 133 (685)
+.|.+|+++++ +.+||-|||+.. |... .--=||+++|..+-+|.++++. ..|..|++|++|.+
T Consensus 12 PrRVNHAavaV---G~riYSFGGYCs-Gedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y 87 (392)
T KOG4693|consen 12 PRRVNHAAVAV---GSRIYSFGGYCS-GEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY 87 (392)
T ss_pred cccccceeeee---cceEEecCCccc-ccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEE
Confidence 46899999999 899999999742 2211 1123799999999999998762 24677999999999
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC-CCCCccceEEEECCEEEEEccccCCCCceeeeceEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
.+++||.||.+.... ..|-++.||+.++.|.+....|. |.+|-||++|+|++.+|||||+.... ..+.++++
T Consensus 88 ~d~~yvWGGRND~eg-----aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a--~~FS~d~h 160 (392)
T KOG4693|consen 88 QDKAYVWGGRNDDEG-----ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDA--QRFSQDTH 160 (392)
T ss_pred cceEEEEcCccCccc-----ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHH--Hhhhccce
Confidence 999999999987644 47899999999999999887774 99999999999999999999997643 35789999
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCC
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~ 292 (685)
.+|+.|.+|..+... +..|.-|-.|+++++++.+|||||.... ..........+.+.+..||..|..|.+....+.
T Consensus 161 ~ld~~TmtWr~~~Tk--g~PprwRDFH~a~~~~~~MYiFGGR~D~--~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~ 236 (392)
T KOG4693|consen 161 VLDFATMTWREMHTK--GDPPRWRDFHTASVIDGMMYIFGGRSDE--SGPFHSIHEQYCDTIMALDLATGAWTRTPENTM 236 (392)
T ss_pred eEeccceeeeehhcc--CCCchhhhhhhhhhccceEEEecccccc--CCCccchhhhhcceeEEEeccccccccCCCCCc
Confidence 999999999999887 6668889999999999999999999876 223333445567789999999999999988888
Q ss_pred CCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEec
Q 005655 293 PPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELR 349 (685)
Q Consensus 293 ~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~ 349 (685)
.|..|..|++.++++.||||||+++. -...+||||+|||.+..|..+..+
T Consensus 237 ~P~GRRSHS~fvYng~~Y~FGGYng~-------ln~HfndLy~FdP~t~~W~~I~~~ 286 (392)
T KOG4693|consen 237 KPGGRRSHSTFVYNGKMYMFGGYNGT-------LNVHFNDLYCFDPKTSMWSVISVR 286 (392)
T ss_pred CCCcccccceEEEcceEEEecccchh-------hhhhhcceeecccccchheeeecc
Confidence 99999999999999999999999763 356799999999999999999884
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=352.88 Aligned_cols=297 Identities=22% Similarity=0.383 Sum_probs=238.4
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCceeeeccE--EEEEcCC----CcEEEecCC-CCCCCcceeEEEEECCEEEEE
Q 005655 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDL--YRYDVEK----QEWKVISSP-NSPPPRSAHQAVSWKNYLYIF 140 (685)
Q Consensus 68 ~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv--~~yd~~~----~~W~~l~s~-~~P~~R~~ha~v~~~~~iyvf 140 (685)
...+..+++. +++|+.|+|.. +. .++.+ |.+++.+ ++|..++++ ..|.||++|+++++++.||||
T Consensus 110 ~~~g~~f~~~---~~~ivgf~G~~--~~---~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~ 181 (470)
T PLN02193 110 KRPGVKFVLQ---GGKIVGFHGRS--TD---VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSF 181 (470)
T ss_pred cCCCCEEEEc---CCeEEEEeccC--CC---cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEE
Confidence 3445555544 79999999952 21 34444 4446644 899998764 358899999999999999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CCC-CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~-~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
||...... ...+++|+||+.+++|+.+++.+ .|. +|.+|++++++++||||||+... .+++++|+||+.+
T Consensus 182 GG~~~~~~----~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~----~~~ndv~~yD~~t 253 (470)
T PLN02193 182 GGEFTPNQ----PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS----RQYNGFYSFDTTT 253 (470)
T ss_pred CCcCCCCC----CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC----CCCccEEEEECCC
Confidence 99854321 13578999999999999887654 344 36799999999999999998643 3589999999999
Q ss_pred CceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcc
Q 005655 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (685)
Q Consensus 219 ~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~ 298 (685)
++|+.+.++ +..|.+|++|++++++++||||||+... ..++++++||+.+++|+.+...+.+|.+|.
T Consensus 254 ~~W~~l~~~--~~~P~~R~~h~~~~~~~~iYv~GG~~~~-----------~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~ 320 (470)
T PLN02193 254 NEWKLLTPV--EEGPTPRSFHSMAADEENVYVFGGVSAT-----------ARLKTLDSYNIVDKKWFHCSTPGDSFSIRG 320 (470)
T ss_pred CEEEEcCcC--CCCCCCccceEEEEECCEEEEECCCCCC-----------CCcceEEEEECCCCEEEeCCCCCCCCCCCC
Confidence 999999876 3448899999999999999999998754 456789999999999999987666788999
Q ss_pred eeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcc
Q 005655 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPI 378 (685)
Q Consensus 299 g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (685)
+|++++++++|||+||... ..+++|++||+.+++|+.+...+
T Consensus 321 ~~~~~~~~gkiyviGG~~g----------~~~~dv~~yD~~t~~W~~~~~~g---------------------------- 362 (470)
T PLN02193 321 GAGLEVVQGKVWVVYGFNG----------CEVDDVHYYDPVQDKWTQVETFG---------------------------- 362 (470)
T ss_pred CcEEEEECCcEEEEECCCC----------CccCceEEEECCCCEEEEeccCC----------------------------
Confidence 9999999999999999743 23689999999999999876521
Q ss_pred hhhhccccccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCccee
Q 005655 379 EAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSC 458 (685)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~ 458 (685)
..|.||..|+
T Consensus 363 ----------------------------------------------------------------------~~P~~R~~~~ 372 (470)
T PLN02193 363 ----------------------------------------------------------------------VRPSERSVFA 372 (470)
T ss_pred ----------------------------------------------------------------------CCCCCcceeE
Confidence 0589999999
Q ss_pred eEEecCEEEEEcCeeeccC-----eeeeeecccccccCCCCccEEeccC
Q 005655 459 MVVGKDTLYVYGGMMEIND-----QEITLDDLYSLNLSKLDEWKCIIPA 502 (685)
Q Consensus 459 ~~v~~~~Lyi~GG~~e~g~-----re~tl~D~y~ldL~kld~w~~~~~~ 502 (685)
++++++.||||||...... ....++|+|+||+.+ +.|+.+...
T Consensus 373 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t-~~W~~~~~~ 420 (470)
T PLN02193 373 SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET-LQWERLDKF 420 (470)
T ss_pred EEEECCEEEEECCccCCccccccCccceeccEEEEEcCc-CEEEEcccC
Confidence 9999999999999753110 123578999999998 889988643
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=362.71 Aligned_cols=284 Identities=21% Similarity=0.363 Sum_probs=247.6
Q ss_pred CCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCcc
Q 005655 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEF 144 (685)
Q Consensus 65 ~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~ 144 (685)
.+.+|..... .. .+.||++||... .....+.+.+|||.+++|..++.+ |.+|..++++++++.|||+||++
T Consensus 272 ~~~~~t~~r~-~~---~~~l~~vGG~~~---~~~~~~~ve~yd~~~~~w~~~a~m--~~~r~~~~~~~~~~~lYv~GG~~ 342 (571)
T KOG4441|consen 272 MQSPRTRPRR-SV---SGKLVAVGGYNR---QGQSLRSVECYDPKTNEWSSLAPM--PSPRCRVGVAVLNGKLYVVGGYD 342 (571)
T ss_pred ccCCCcccCc-CC---CCeEEEECCCCC---CCcccceeEEecCCcCcEeecCCC--CcccccccEEEECCEEEEEcccc
Confidence 5555554443 22 489999999633 123678999999999999999887 48899999999999999999998
Q ss_pred CCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 145 ~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
.. ...++.+|+||+.+++|+.+++ |+.+|.+|+++++++.||++||+++ ..+++++++||+.+++|+.+
T Consensus 343 ~~-----~~~l~~ve~YD~~~~~W~~~a~--M~~~R~~~~v~~l~g~iYavGG~dg----~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 343 SG-----SDRLSSVERYDPRTNQWTPVAP--MNTKRSDFGVAVLDGKLYAVGGFDG----EKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CC-----CcccceEEEecCCCCceeccCC--ccCccccceeEEECCEEEEEecccc----ccccccEEEecCCCCccccc
Confidence 51 2468999999999999999988 9999999999999999999999985 34699999999999999999
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE
Q 005655 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (685)
Q Consensus 225 ~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~ 304 (685)
.++ +.+|++|+++++++.||++||.+.. ...++.+.+|||.+++|+.+++| +.+|.++++++
T Consensus 412 a~m-----~~~r~~~gv~~~~g~iYi~GG~~~~----------~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~ 473 (571)
T KOG4441|consen 412 APM-----LTRRSGHGVAVLGGKLYIIGGGDGS----------SNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAV 473 (571)
T ss_pred CCC-----CcceeeeEEEEECCEEEEEcCcCCC----------ccccceEEEEcCCCCceeecCCc---ccccccceEEE
Confidence 998 7899999999999999999999876 23889999999999999999986 67999999999
Q ss_pred ECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhcc
Q 005655 305 HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFD 384 (685)
Q Consensus 305 ~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (685)
++++||++||.++. .....|++||+.+++|+.+..
T Consensus 474 ~~~~iYvvGG~~~~---------~~~~~VE~ydp~~~~W~~v~~------------------------------------ 508 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGT---------SALSSVERYDPETNQWTMVAP------------------------------------ 508 (571)
T ss_pred ECCEEEEECCccCC---------CccceEEEEcCCCCceeEccc------------------------------------
Confidence 99999999999761 235669999999999999865
Q ss_pred ccccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecC
Q 005655 385 ANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD 464 (685)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~ 464 (685)
|+.+|.+++++++++
T Consensus 509 -----------------------------------------------------------------m~~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 509 -----------------------------------------------------------------MTSPRSAVGVVVLGG 523 (571)
T ss_pred -----------------------------------------------------------------CccccccccEEEECC
Confidence 788999999999999
Q ss_pred EEEEEcCeeeccCeeeeeecccccccCCCCccEEecc
Q 005655 465 TLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIP 501 (685)
Q Consensus 465 ~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~w~~~~~ 501 (685)
.||+.||.. ..-.++.+-+||+.+ |.|+.+.+
T Consensus 524 ~ly~vGG~~----~~~~l~~ve~ydp~~-d~W~~~~~ 555 (571)
T KOG4441|consen 524 KLYAVGGFD----GNNNLNTVECYDPET-DTWTEVTE 555 (571)
T ss_pred EEEEEeccc----CccccceeEEcCCCC-CceeeCCC
Confidence 999999943 234688888899988 99999877
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=330.51 Aligned_cols=281 Identities=21% Similarity=0.341 Sum_probs=219.7
Q ss_pred cCCCcEEEecCCC--CCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CCCC-Cccc
Q 005655 108 VEKQEWKVISSPN--SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSP-RSGH 183 (685)
Q Consensus 108 ~~~~~W~~l~s~~--~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~-Rsgh 183 (685)
+...+|..+.... .|.||.+|+++++++.||||||...... ...+++|+||+.+++|+.+++.+ .|.. +.+|
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~----~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNE----HIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCC----ceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 3567899997643 5889999999999999999999854321 24589999999999999988743 2332 4489
Q ss_pred eEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccC
Q 005655 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263 (685)
Q Consensus 184 ~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~ 263 (685)
++++++++||||||+... ..++++++||+.+++|+.++.+.....|.+|.+|++++++++|||+||+... .
T Consensus 80 ~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~--~--- 150 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEK----REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKG--G--- 150 (341)
T ss_pred EEEEECCEEEEECCCCCC----CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCC--C---
Confidence 999999999999998643 2478999999999999999876433458899999999999999999998643 0
Q ss_pred CCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
.......++++++||+.+++|+.+..++.+|.+|.+|++++++++|||+||.......+. ......++|++||+.+++|
T Consensus 151 ~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG-~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 151 LMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGG-KSDYESNAVQFFDPASGKW 229 (341)
T ss_pred ccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCC-ccceecCceEEEEcCCCcE
Confidence 000112457899999999999999887777789999999999999999999753210000 0112368899999999999
Q ss_pred EEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeeccccc
Q 005655 344 YPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVL 423 (685)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (685)
..+...+
T Consensus 230 ~~~~~~g------------------------------------------------------------------------- 236 (341)
T PLN02153 230 TEVETTG------------------------------------------------------------------------- 236 (341)
T ss_pred EeccccC-------------------------------------------------------------------------
Confidence 9876411
Q ss_pred cccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeec-----cCeeeeeecccccccCCCCccEE
Q 005655 424 AAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEI-----NDQEITLDDLYSLNLSKLDEWKC 498 (685)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~-----g~re~tl~D~y~ldL~kld~w~~ 498 (685)
.+|.+|..|+++++++.||||||.... ......++|+|+||+.+ +.|+.
T Consensus 237 -------------------------~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~-~~W~~ 290 (341)
T PLN02153 237 -------------------------AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET-LVWEK 290 (341)
T ss_pred -------------------------CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc-cEEEe
Confidence 068999999999999999999996311 01234578999999998 99998
Q ss_pred ecc
Q 005655 499 IIP 501 (685)
Q Consensus 499 ~~~ 501 (685)
+..
T Consensus 291 ~~~ 293 (341)
T PLN02153 291 LGE 293 (341)
T ss_pred ccC
Confidence 864
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=329.64 Aligned_cols=258 Identities=19% Similarity=0.285 Sum_probs=191.4
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEc--CCCcEEEecCCCCCCCcceeEEEEECCEEEEE
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDV--EKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~--~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvf 140 (685)
+++|.+|.+++++++ ++.|||+||.. .+++|+||+ .+++|..+++++. .+|..|+++++++.|||+
T Consensus 2 ~~lp~~~~~~~~~~~---~~~vyv~GG~~--------~~~~~~~d~~~~~~~W~~l~~~p~-~~R~~~~~~~~~~~iYv~ 69 (346)
T TIGR03547 2 PDLPVGFKNGTGAII---GDKVYVGLGSA--------GTSWYKLDLKKPSKGWQKIADFPG-GPRNQAVAAAIDGKLYVF 69 (346)
T ss_pred CCCCccccCceEEEE---CCEEEEEcccc--------CCeeEEEECCCCCCCceECCCCCC-CCcccceEEEECCEEEEE
Confidence 568899999888888 89999999951 257899996 5789999987631 479999999999999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEE-EECCEEEEEccccCCCC----------------
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMV-LYKHKIIVFGGFYDTLR---------------- 203 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v-~~~~~lyv~GG~~~~~~---------------- 203 (685)
||............++++|+||+.+++|+.++. .+|.+|.+|+++ +++++||++||+.....
T Consensus 70 GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 148 (346)
T TIGR03547 70 GGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEP 148 (346)
T ss_pred eCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchh
Confidence 997543211112357899999999999999974 368888999887 78999999999853100
Q ss_pred --------------ceeeeceEEEEEcCCCceEEeccCCCCCCCC-CccceeEEEeCCEEEEEecccCCCCcccCCCCCC
Q 005655 204 --------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268 (685)
Q Consensus 204 --------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~-~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~ 268 (685)
...+++++++||+.+++|+.+.++ |. +|++++++.++++|||+||.... +
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~-----p~~~r~~~~~~~~~~~iyv~GG~~~~----------~ 213 (346)
T TIGR03547 149 KDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN-----PFLGTAGSAIVHKGNKLLLINGEIKP----------G 213 (346)
T ss_pred hhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC-----CCCcCCCceEEEECCEEEEEeeeeCC----------C
Confidence 001248899999999999999877 64 78999999999999999998643 1
Q ss_pred ceeeeEEEE--eCCCceeEEeecCCCC----CCCcceeEEEEECCeEEEecceecccCCcc----cc--c--cccCCcEE
Q 005655 269 IIHSDLWSL--DPRTWEWSKVKKIGMP----PGPRAGFSMCVHKKRALLFGGVVDMEMKGD----VI--M--SLFLNELY 334 (685)
Q Consensus 269 ~~~~dv~~y--d~~t~~W~~~~~~g~~----P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~----~~--~--~~~~ndl~ 334 (685)
....+++.| ++.+++|+.+.++..+ +..|.+|++++++++|||+||.......+. .. . ....+.+.
T Consensus 214 ~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e 293 (346)
T TIGR03547 214 LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSE 293 (346)
T ss_pred ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEee
Confidence 223445555 4577899999876332 123457778899999999999863211000 00 0 00124689
Q ss_pred EEECCCCcEEEEEe
Q 005655 335 GFQLDNHRWYPLEL 348 (685)
Q Consensus 335 ~yd~~t~~W~~l~~ 348 (685)
+||+.+++|+.+..
T Consensus 294 ~yd~~~~~W~~~~~ 307 (346)
T TIGR03547 294 VYALDNGKWSKVGK 307 (346)
T ss_pred EEEecCCcccccCC
Confidence 99999999987654
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=324.24 Aligned_cols=249 Identities=19% Similarity=0.295 Sum_probs=192.1
Q ss_pred CCCcceEEEEeccCCCEEEEEcCeecC------CCceeeeccEEEEE-cCC-CcEEEecCCCCCCCcceeEEEEECCEEE
Q 005655 67 SPRSNCSLNINPLKETELILYGGEFYN------GNKTYVYGDLYRYD-VEK-QEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (685)
Q Consensus 67 ~~R~~~s~~~~p~~~~~L~vfGG~~~~------g~~~~~~ndv~~yd-~~~-~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (685)
..++++.++++ ++.|||+||..+. +.....++++|+|+ +.. .+|..++++ |.+|..|+++++++.||
T Consensus 2 ~~~~g~~~~~~---~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~l--p~~r~~~~~~~~~~~ly 76 (323)
T TIGR03548 2 LGVAGCYAGII---GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQL--PYEAAYGASVSVENGIY 76 (323)
T ss_pred CceeeEeeeEE---CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccC--CccccceEEEEECCEEE
Confidence 45678888888 8999999998654 23446789999996 332 279888765 67898888899999999
Q ss_pred EEcCccCCCCCccccccCeEEEEECCCCcE----EEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEE
Q 005655 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQW----EQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (685)
Q Consensus 139 vfGG~~~s~~~~~~~~~~dv~~yD~~t~~W----~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (685)
|+||.... ..++++|+||+.++.| ..+++ +|.+|.+|++++++++|||+||.... ..++++++|
T Consensus 77 viGG~~~~------~~~~~v~~~d~~~~~w~~~~~~~~~--lp~~~~~~~~~~~~~~iYv~GG~~~~----~~~~~v~~y 144 (323)
T TIGR03548 77 YIGGSNSS------ERFSSVYRITLDESKEELICETIGN--LPFTFENGSACYKDGTLYVGGGNRNG----KPSNKSYLF 144 (323)
T ss_pred EEcCCCCC------CCceeEEEEEEcCCceeeeeeEcCC--CCcCccCceEEEECCEEEEEeCcCCC----ccCceEEEE
Confidence 99997543 2468999999999998 56665 89999999999999999999997532 247899999
Q ss_pred EcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCC--
Q 005655 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM-- 292 (685)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~-- 292 (685)
|+.+++|+.+++++ ..+|.+|++++++++|||+||.... ...++++||+.+++|+.+..+..
T Consensus 145 d~~~~~W~~~~~~p----~~~r~~~~~~~~~~~iYv~GG~~~~------------~~~~~~~yd~~~~~W~~~~~~~~~~ 208 (323)
T TIGR03548 145 NLETQEWFELPDFP----GEPRVQPVCVKLQNELYVFGGGSNI------------AYTDGYKYSPKKNQWQKVADPTTDS 208 (323)
T ss_pred cCCCCCeeECCCCC----CCCCCcceEEEECCEEEEEcCCCCc------------cccceEEEecCCCeeEECCCCCCCC
Confidence 99999999998762 2479999999999999999998643 23578999999999999987642
Q ss_pred CCCCcceeEE-EEECCeEEEecceecccCCc----------c-------------ccccccCCcEEEEECCCCcEEEEEe
Q 005655 293 PPGPRAGFSM-CVHKKRALLFGGVVDMEMKG----------D-------------VIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 293 ~P~~R~g~s~-~~~~~~iyvfGG~~~~~~~~----------~-------------~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.|.++.++++ ++.+++||||||........ . .-...|.+.+++||+.+++|+.++.
T Consensus 209 ~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 288 (323)
T TIGR03548 209 EPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN 288 (323)
T ss_pred CceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc
Confidence 3444444444 44579999999986421000 0 0001245789999999999998764
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=347.63 Aligned_cols=264 Identities=13% Similarity=0.210 Sum_probs=220.1
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
..+++||+.+++|..++++ |.+|.+|+++++++.|||+||..... ..++++|+||+.++.|..+++ ||.+|
T Consensus 272 ~~v~~yd~~~~~W~~l~~m--p~~r~~~~~a~l~~~IYviGG~~~~~-----~~~~~v~~Yd~~~n~W~~~~~--m~~~R 342 (557)
T PHA02713 272 PCILVYNINTMEYSVISTI--PNHIINYASAIVDNEIIIAGGYNFNN-----PSLNKVYKINIENKIHVELPP--MIKNR 342 (557)
T ss_pred CCEEEEeCCCCeEEECCCC--CccccceEEEEECCEEEEEcCCCCCC-----CccceEEEEECCCCeEeeCCC--Ccchh
Confidence 4789999999999999875 57899999999999999999974321 246899999999999999988 89999
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCc
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~ 260 (685)
++|++++++++||++||+.+. ..++++++||+.+++|+.++++ |.+|++++++++++.||++||.......
T Consensus 343 ~~~~~~~~~g~IYviGG~~~~----~~~~sve~Ydp~~~~W~~~~~m-----p~~r~~~~~~~~~g~IYviGG~~~~~~~ 413 (557)
T PHA02713 343 CRFSLAVIDDTIYAIGGQNGT----NVERTIECYTMGDDKWKMLPDM-----PIALSSYGMCVLDQYIYIIGGRTEHIDY 413 (557)
T ss_pred hceeEEEECCEEEEECCcCCC----CCCceEEEEECCCCeEEECCCC-----CcccccccEEEECCEEEEEeCCCccccc
Confidence 999999999999999998543 2478999999999999999988 8999999999999999999998643000
Q ss_pred cc-------CCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcE
Q 005655 261 DK-------NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (685)
Q Consensus 261 ~~-------~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (685)
.. ........++.+++|||.+++|+.++++ |.+|.++++++++++|||+||..+. ....+.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~--------~~~~~~v 482 (557)
T PHA02713 414 TSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDE--------KNVKTCI 482 (557)
T ss_pred ccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCC--------CccceeE
Confidence 00 0000112367899999999999999764 6789999999999999999998642 1123568
Q ss_pred EEEECCC-CcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCC
Q 005655 334 YGFQLDN-HRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECV 412 (685)
Q Consensus 334 ~~yd~~t-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (685)
++|||.+ ++|+.++.
T Consensus 483 e~Ydp~~~~~W~~~~~---------------------------------------------------------------- 498 (557)
T PHA02713 483 FRYNTNTYNGWELITT---------------------------------------------------------------- 498 (557)
T ss_pred EEecCCCCCCeeEccc----------------------------------------------------------------
Confidence 9999999 89998765
Q ss_pred CcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeeeeeecccccccCC
Q 005655 413 PNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (685)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D~y~ldL~k 492 (685)
||.+|..+++++++++|||+||... ..++.+||+.+
T Consensus 499 -------------------------------------m~~~r~~~~~~~~~~~iyv~Gg~~~-------~~~~e~yd~~~ 534 (557)
T PHA02713 499 -------------------------------------TESRLSALHTILHDNTIMMLHCYES-------YMLQDTFNVYT 534 (557)
T ss_pred -------------------------------------cCcccccceeEEECCEEEEEeeecc-------eeehhhcCccc
Confidence 7999999999999999999999863 23678999988
Q ss_pred CCccEEeccC
Q 005655 493 LDEWKCIIPA 502 (685)
Q Consensus 493 ld~w~~~~~~ 502 (685)
++|+.+.+.
T Consensus 535 -~~W~~~~~~ 543 (557)
T PHA02713 535 -YEWNHICHQ 543 (557)
T ss_pred -ccccchhhh
Confidence 999998775
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=324.62 Aligned_cols=311 Identities=19% Similarity=0.278 Sum_probs=229.0
Q ss_pred eeEEEeecCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcC--CCcEEEecCCCCCCCcceeEEE
Q 005655 54 KKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSPPPRSAHQAV 131 (685)
Q Consensus 54 ~~~~~~~~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~--~~~W~~l~s~~~P~~R~~ha~v 131 (685)
...+.+...+++|.+|.+++.+++ ++.|||+||. .+ +.+++||+. +++|..+++++ ..+|++|+++
T Consensus 14 ~~~~~~~~l~~lP~~~~~~~~~~~---~~~iyv~gG~--~~------~~~~~~d~~~~~~~W~~l~~~p-~~~r~~~~~v 81 (376)
T PRK14131 14 SFAANAEQLPDLPVPFKNGTGAID---NNTVYVGLGS--AG------TSWYKLDLNAPSKGWTKIAAFP-GGPREQAVAA 81 (376)
T ss_pred hcceecccCCCCCcCccCCeEEEE---CCEEEEEeCC--CC------CeEEEEECCCCCCCeEECCcCC-CCCcccceEE
Confidence 345666688899999998888888 8999999995 11 357899986 47899988653 2489999999
Q ss_pred EECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEE-ECCEEEEEccccCCCC-------
Q 005655 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLR------- 203 (685)
Q Consensus 132 ~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~-~~~~lyv~GG~~~~~~------- 203 (685)
++++.||||||............++++|+||+.+++|+.+++ ..|.+|.+|++++ ++++||+|||......
T Consensus 82 ~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~ 160 (376)
T PRK14131 82 FIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDL 160 (376)
T ss_pred EECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhh
Confidence 999999999998642111112357899999999999999985 2478888998887 8999999999753100
Q ss_pred -----------------------ceeeeceEEEEEcCCCceEEeccCCCCCCCC-CccceeEEEeCCEEEEEecccCCCC
Q 005655 204 -----------------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVS 259 (685)
Q Consensus 204 -----------------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~-~Rs~~s~~~~~~~Iyv~GG~~~~~~ 259 (685)
...++++|++||+.+++|+.+.++ |. +|.+|+++.++++|||+||....
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~-----p~~~~~~~a~v~~~~~iYv~GG~~~~-- 233 (376)
T PRK14131 161 AAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES-----PFLGTAGSAVVIKGNKLWLINGEIKP-- 233 (376)
T ss_pred hhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC-----CCCCCCcceEEEECCEEEEEeeeECC--
Confidence 001357899999999999998876 54 78899999999999999997543
Q ss_pred cccCCCCCCceeeeE--EEEeCCCceeEEeecCCCCC-----CCcceeEEEEECCeEEEecceecccCCccccccc----
Q 005655 260 TDKNQSEKGIIHSDL--WSLDPRTWEWSKVKKIGMPP-----GPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSL---- 328 (685)
Q Consensus 260 ~~~~~~~~~~~~~dv--~~yd~~t~~W~~~~~~g~~P-----~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~---- 328 (685)
+....++ +.||+.+++|..+..+..++ ..+.++.+++++++|||+||........+.....
T Consensus 234 --------~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 305 (376)
T PRK14131 234 --------GLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAH 305 (376)
T ss_pred --------CcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccc
Confidence 1222334 45678899999998753211 1123344677899999999976422100000000
Q ss_pred ----cCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhcccc
Q 005655 329 ----FLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESN 404 (685)
Q Consensus 329 ----~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (685)
....+.+||+.+++|..+..
T Consensus 306 ~~~~~~~~~e~yd~~~~~W~~~~~-------------------------------------------------------- 329 (376)
T PRK14131 306 EGLKKSWSDEIYALVNGKWQKVGE-------------------------------------------------------- 329 (376)
T ss_pred cCCcceeehheEEecCCcccccCc--------------------------------------------------------
Confidence 01347799999999986643
Q ss_pred ccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeeeeeec
Q 005655 405 IDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDD 484 (685)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D 484 (685)
+|.||..++++++++.|||+||....+ ..++|
T Consensus 330 ---------------------------------------------lp~~r~~~~av~~~~~iyv~GG~~~~~---~~~~~ 361 (376)
T PRK14131 330 ---------------------------------------------LPQGLAYGVSVSWNNGVLLIGGETAGG---KAVSD 361 (376)
T ss_pred ---------------------------------------------CCCCccceEEEEeCCEEEEEcCCCCCC---cEeee
Confidence 799999999999999999999975444 45889
Q ss_pred ccccccCCCCccE
Q 005655 485 LYSLNLSKLDEWK 497 (685)
Q Consensus 485 ~y~ldL~kld~w~ 497 (685)
+|.|.+.. .++.
T Consensus 362 v~~~~~~~-~~~~ 373 (376)
T PRK14131 362 VTLLSWDG-KKLT 373 (376)
T ss_pred EEEEEEcC-CEEE
Confidence 99988765 4443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=338.57 Aligned_cols=244 Identities=13% Similarity=0.221 Sum_probs=208.1
Q ss_pred eecCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEE
Q 005655 59 VEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (685)
Q Consensus 59 ~~~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (685)
|....++|.+|.+|++++. ++.|||+||...+ ....+.+++|||.+++|..++++ |.+|++|++++++++||
T Consensus 284 W~~l~~mp~~r~~~~~a~l---~~~IYviGG~~~~---~~~~~~v~~Yd~~~n~W~~~~~m--~~~R~~~~~~~~~g~IY 355 (557)
T PHA02713 284 YSVISTIPNHIINYASAIV---DNEIIIAGGYNFN---NPSLNKVYKINIENKIHVELPPM--IKNRCRFSLAVIDDTIY 355 (557)
T ss_pred EEECCCCCccccceEEEEE---CCEEEEEcCCCCC---CCccceEEEEECCCCeEeeCCCC--cchhhceeEEEECCEEE
Confidence 3355688999999999998 8999999995322 12468999999999999999876 58999999999999999
Q ss_pred EEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCC--------------c
Q 005655 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR--------------E 204 (685)
Q Consensus 139 vfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~--------------~ 204 (685)
++||.... ..++++++||+.+++|+.+++ ||.+|++|++++++++||++||...... .
T Consensus 356 viGG~~~~------~~~~sve~Ydp~~~~W~~~~~--mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 356 AIGGQNGT------NVERTIECYTMGDDKWKMLPD--MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EECCcCCC------CCCceEEEEECCCCeEEECCC--CCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 99997543 246889999999999999988 9999999999999999999999864211 0
Q ss_pred eeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC-ce
Q 005655 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WE 283 (685)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~ 283 (685)
...++.+++|||.+++|+.++++ |.+|.++++++++++|||+||++.. ....+.+++|||.+ ++
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m-----~~~r~~~~~~~~~~~IYv~GG~~~~----------~~~~~~ve~Ydp~~~~~ 492 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNF-----WTGTIRPGVVSHKDDIYVVCDIKDE----------KNVKTCIFRYNTNTYNG 492 (557)
T ss_pred ccccceEEEECCCCCeEeecCCC-----CcccccCcEEEECCEEEEEeCCCCC----------CccceeEEEecCCCCCC
Confidence 11368899999999999999988 8899999999999999999998643 12345689999999 89
Q ss_pred eEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 284 WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 284 W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
|+.+.++ |.+|.++++++++++||++||..+ ...+.+||+.+++|+.+..
T Consensus 493 W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~~~------------~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 493 WELITTT---ESRLSALHTILHDNTIMMLHCYES------------YMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred eeEcccc---CcccccceeEEECCEEEEEeeecc------------eeehhhcCcccccccchhh
Confidence 9999764 789999999999999999999865 2468999999999998886
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=336.43 Aligned_cols=241 Identities=23% Similarity=0.401 Sum_probs=217.3
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvf 140 (685)
...++|.+|..++++++ ++.||++||... ....++.+++|||.+++|..+++|+ .+|++|++++++|.||++
T Consensus 315 ~~a~m~~~r~~~~~~~~---~~~lYv~GG~~~---~~~~l~~ve~YD~~~~~W~~~a~M~--~~R~~~~v~~l~g~iYav 386 (571)
T KOG4441|consen 315 SLAPMPSPRCRVGVAVL---NGKLYVVGGYDS---GSDRLSSVERYDPRTNQWTPVAPMN--TKRSDFGVAVLDGKLYAV 386 (571)
T ss_pred ecCCCCcccccccEEEE---CCEEEEEccccC---CCcccceEEEecCCCCceeccCCcc--CccccceeEEECCEEEEE
Confidence 56789999999999999 899999999632 2346799999999999999998876 899999999999999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
||.++. ..++++.+||+.++.|+.+++ |+.+|++|++++++++||++||+.+..+ +++++++|||.+++
T Consensus 387 GG~dg~------~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~---~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 387 GGFDGE------KSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSN---CLNSVECYDPETNT 455 (571)
T ss_pred eccccc------cccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEEEEEcCcCCCcc---ccceEEEEcCCCCc
Confidence 999854 367899999999999999998 8889999999999999999999877542 79999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCccee
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~ 300 (685)
|+.+++| +.+|.+++++++++.||++||+++. ..+..+.+|||.+++|+.+.++ +.+|+++
T Consensus 456 W~~~~~M-----~~~R~~~g~a~~~~~iYvvGG~~~~-----------~~~~~VE~ydp~~~~W~~v~~m---~~~rs~~ 516 (571)
T KOG4441|consen 456 WTLIAPM-----NTRRSGFGVAVLNGKIYVVGGFDGT-----------SALSSVERYDPETNQWTMVAPM---TSPRSAV 516 (571)
T ss_pred eeecCCc-----ccccccceEEEECCEEEEECCccCC-----------CccceEEEEcCCCCceeEcccC---ccccccc
Confidence 9999999 8999999999999999999999874 3455699999999999999764 6799999
Q ss_pred EEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+++++++++|++||..+ ..+++.|.+||+.+++|+.+..
T Consensus 517 g~~~~~~~ly~vGG~~~---------~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDG---------NNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cEEEECCEEEEEecccC---------ccccceeEEcCCCCCceeeCCC
Confidence 99999999999999765 4578999999999999999887
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=318.96 Aligned_cols=256 Identities=33% Similarity=0.586 Sum_probs=223.2
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEec-CCCCCCCcceeEEEEECCEEEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAHQAVSWKNYLYI 139 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~-s~~~P~~R~~ha~v~~~~~iyv 139 (685)
.....|.+|.+|+++.+ ++.+|||||......... .+||+||..+..|.... ....|.+|.+|++++++++|||
T Consensus 53 ~~~~~p~~R~~hs~~~~---~~~~~vfGG~~~~~~~~~--~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~l 127 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLI---GNKLYVFGGYGSGDRLTD--LDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYL 127 (482)
T ss_pred cCCCCcchhhccceeEE---CCEEEEECCCCCCCcccc--ceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEE
Confidence 34568999999999999 899999999743322211 17999999999999554 4556889999999999999999
Q ss_pred EcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC-CCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 140 fGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
|||.... ..++++++.||+.|++|..+.+.+. |.+|.+|++++++++||||||...... ++|++|+||+.+
T Consensus 128 fGG~~~~-----~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~---~~ndl~i~d~~~ 199 (482)
T KOG0379|consen 128 FGGTDKK-----YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD---SLNDLHIYDLET 199 (482)
T ss_pred EccccCC-----CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc---ceeeeeeecccc
Confidence 9998762 2358999999999999999998776 999999999999999999999876542 799999999999
Q ss_pred CceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcc
Q 005655 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (685)
Q Consensus 219 ~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~ 298 (685)
.+|.++... +..|.||.+|+++++++++|||||.+.. ..+++|+|+||+.+..|..+...+..|.+|+
T Consensus 200 ~~W~~~~~~--g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~ 267 (482)
T KOG0379|consen 200 STWSELDTQ--GEAPSPRYGHAMVVVGNKLLVFGGGDDG----------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRS 267 (482)
T ss_pred ccceecccC--CCCCCCCCCceEEEECCeEEEEeccccC----------CceecceEeeecccceeeeccccCCCCCCcc
Confidence 999999987 6679999999999999999999999833 4899999999999999999999999999999
Q ss_pred eeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 299 g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+|++++.+..++||||..... ...+.++|.|++.+..|..+..
T Consensus 268 ~h~~~~~~~~~~l~gG~~~~~-------~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 268 GHSLTVSGDHLLLFGGGTDPK-------QEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred eeeeEEECCEEEEEcCCcccc-------cccccccccccccccceeeeec
Confidence 999999999999999986530 1258899999999999999886
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=284.95 Aligned_cols=273 Identities=25% Similarity=0.453 Sum_probs=230.0
Q ss_pred cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-----------CCCCC
Q 005655 112 EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-----------CPSPR 180 (685)
Q Consensus 112 ~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-----------~P~~R 180 (685)
.|..--... +.|.+|++++++..||-|||+.+...-. ...--||.+||..+-.|+++++.- .|..|
T Consensus 3 ~WTVHLeGG--PrRVNHAavaVG~riYSFGGYCsGedy~-~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 3 TWTVHLEGG--PRRVNHAAVAVGSRIYSFGGYCSGEDYD-AKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred eEEEEecCC--cccccceeeeecceEEecCCcccccccc-cCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 466433332 5799999999999999999987654321 111247999999999999998711 27789
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCc
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~ 260 (685)
+||+.|.+++++||.||.++.. ...|.+++||+.+++|.+.... +.+|.+|-||++|++++.+||||||...
T Consensus 80 YGHtvV~y~d~~yvWGGRND~e---gaCN~Ly~fDp~t~~W~~p~v~--G~vPgaRDGHsAcV~gn~MyiFGGye~~--- 151 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDE---GACNLLYEFDPETNVWKKPEVE--GFVPGARDGHSACVWGNQMYIFGGYEED--- 151 (392)
T ss_pred cCceEEEEcceEEEEcCccCcc---cccceeeeecccccccccccee--eecCCccCCceeeEECcEEEEecChHHH---
Confidence 9999999999999999998742 3689999999999999998877 7789999999999999999999999876
Q ss_pred ccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
...+.+|++.||..|.+|+.+...|.||.-|-.|+++++++++|||||..+....-+++...+.+.+..+|+.|
T Consensus 152 ------a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T 225 (392)
T KOG4693|consen 152 ------AQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLAT 225 (392)
T ss_pred ------HHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccc
Confidence 34788999999999999999999999999999999999999999999998765555566677889999999999
Q ss_pred CcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeecc
Q 005655 341 HRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDD 420 (685)
Q Consensus 341 ~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (685)
..|...+..
T Consensus 226 ~aW~r~p~~----------------------------------------------------------------------- 234 (392)
T KOG4693|consen 226 GAWTRTPEN----------------------------------------------------------------------- 234 (392)
T ss_pred cccccCCCC-----------------------------------------------------------------------
Confidence 999875431
Q ss_pred ccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeeeeeecccccccCCCCccEEec
Q 005655 421 GVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCII 500 (685)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~w~~~~ 500 (685)
.++|..|.+|++.|.++.||||||++..= ..-++|||+||..+ --|++|-
T Consensus 235 ---------------------------~~~P~GRRSHS~fvYng~~Y~FGGYng~l--n~HfndLy~FdP~t-~~W~~I~ 284 (392)
T KOG4693|consen 235 ---------------------------TMKPGGRRSHSTFVYNGKMYMFGGYNGTL--NVHFNDLYCFDPKT-SMWSVIS 284 (392)
T ss_pred ---------------------------CcCCCcccccceEEEcceEEEecccchhh--hhhhcceeeccccc-chheeee
Confidence 12699999999999999999999998433 35689999999988 7899987
Q ss_pred cC
Q 005655 501 PA 502 (685)
Q Consensus 501 ~~ 502 (685)
..
T Consensus 285 ~~ 286 (392)
T KOG4693|consen 285 VR 286 (392)
T ss_pred cc
Confidence 54
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=326.00 Aligned_cols=271 Identities=18% Similarity=0.257 Sum_probs=222.7
Q ss_pred CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEE
Q 005655 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWML 161 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~y 161 (685)
..+++.||.. . .+..+.+|++..++|..++.. | .+..|+++++++.|||+||..... ...+++|+|
T Consensus 251 ~~~~~~~g~~---~---~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~y 316 (534)
T PHA03098 251 SIIYIHITMS---I---FTYNYITNYSPLSEINTIIDI--H-YVYCFGSVVLNNVIYFIGGMNKNN-----LSVNSVVSY 316 (534)
T ss_pred cceEeecccc---h---hhceeeecchhhhhcccccCc--c-ccccceEEEECCEEEEECCCcCCC-----CeeccEEEE
Confidence 4455556631 1 234566889889999987543 2 345578999999999999986432 246799999
Q ss_pred ECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeE
Q 005655 162 DLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQF 241 (685)
Q Consensus 162 D~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~ 241 (685)
|+.+++|..+++ +|.+|.+|++++++++||++||... ...++++++||+.+++|+.++++ |.||++|++
T Consensus 317 d~~~~~W~~~~~--~~~~R~~~~~~~~~~~lyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~l-----p~~r~~~~~ 385 (534)
T PHA03098 317 DTKTKSWNKVPE--LIYPRKNPGVTVFNNRIYVIGGIYN----SISLNTVESWKPGESKWREEPPL-----IFPRYNPCV 385 (534)
T ss_pred eCCCCeeeECCC--CCcccccceEEEECCEEEEEeCCCC----CEecceEEEEcCCCCceeeCCCc-----CcCCccceE
Confidence 999999999987 8899999999999999999999863 23578999999999999998887 889999999
Q ss_pred EEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCC
Q 005655 242 FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMK 321 (685)
Q Consensus 242 ~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~ 321 (685)
+.+++.|||+||.... +..++++++||+.+++|+.+.+ .|.+|.+|++++++++|||+||......
T Consensus 386 ~~~~~~iYv~GG~~~~----------~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~- 451 (534)
T PHA03098 386 VNVNNLIYVIGGISKN----------DELLKTVECFSLNTNKWSKGSP---LPISHYGGCAIYHDGKIYVIGGISYIDN- 451 (534)
T ss_pred EEECCEEEEECCcCCC----------CcccceEEEEeCCCCeeeecCC---CCccccCceEEEECCEEEEECCccCCCC-
Confidence 9999999999997643 2346889999999999999875 4789999999999999999999864221
Q ss_pred ccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhc
Q 005655 322 GDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEM 401 (685)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (685)
...++.+++||+.+++|..++.
T Consensus 452 -----~~~~~~v~~yd~~~~~W~~~~~----------------------------------------------------- 473 (534)
T PHA03098 452 -----IKVYNIVESYNPVTNKWTELSS----------------------------------------------------- 473 (534)
T ss_pred -----CcccceEEEecCCCCceeeCCC-----------------------------------------------------
Confidence 1235679999999999997653
Q ss_pred cccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeeee
Q 005655 402 ESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEIT 481 (685)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~t 481 (685)
+|.||+++++++.++.|||+||.... ..
T Consensus 474 ------------------------------------------------~~~~r~~~~~~~~~~~iyv~GG~~~~----~~ 501 (534)
T PHA03098 474 ------------------------------------------------LNFPRINASLCIFNNKIYVVGGDKYE----YY 501 (534)
T ss_pred ------------------------------------------------CCcccccceEEEECCEEEEEcCCcCC----cc
Confidence 68889999999999999999998632 24
Q ss_pred eecccccccCCCCccEEeccC
Q 005655 482 LDDLYSLNLSKLDEWKCIIPA 502 (685)
Q Consensus 482 l~D~y~ldL~kld~w~~~~~~ 502 (685)
++++|.||+.+ +.|+.+...
T Consensus 502 ~~~v~~yd~~~-~~W~~~~~~ 521 (534)
T PHA03098 502 INEIEVYDDKT-NTWTLFCKF 521 (534)
T ss_pred cceeEEEeCCC-CEEEecCCC
Confidence 78999999998 999988754
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=300.47 Aligned_cols=322 Identities=25% Similarity=0.457 Sum_probs=256.4
Q ss_pred hhceeEEEeecCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEe-cCCCCCCCcceeE
Q 005655 51 EAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI-SSPNSPPPRSAHQ 129 (685)
Q Consensus 51 ~~~~~~~~~~~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l-~s~~~P~~R~~ha 129 (685)
.-+|..+. ....|-|.||.||-++++ ..-|+||||- +. -..+.+++||..+++|..- .....|++-..|.
T Consensus 16 ~~rWrrV~-~~tGPvPrpRHGHRAVai---kELiviFGGG--NE---GiiDELHvYNTatnqWf~PavrGDiPpgcAA~G 86 (830)
T KOG4152|consen 16 VVRWRRVQ-QSTGPVPRPRHGHRAVAI---KELIVIFGGG--NE---GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFG 86 (830)
T ss_pred ccceEEEe-cccCCCCCccccchheee---eeeEEEecCC--cc---cchhhhhhhccccceeecchhcCCCCCchhhcc
Confidence 34555554 366788999999999999 6889999993 22 2678999999999999832 2455678888899
Q ss_pred EEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-----CCCCCccceEEEECCEEEEEccccCCCCc
Q 005655 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-----CPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204 (685)
Q Consensus 130 ~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-----~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~ 204 (685)
++..+.+||+|||+.... .+.|++|.+-...=.|.++.+.. .|.||.||+..+++++.|+|||......+
T Consensus 87 fvcdGtrilvFGGMvEYG-----kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseD 161 (830)
T KOG4152|consen 87 FVCDGTRILVFGGMVEYG-----KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSED 161 (830)
T ss_pred eEecCceEEEEccEeeec-----cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccC
Confidence 998999999999986543 25688877766656777776532 38999999999999999999998654332
Q ss_pred -----eeeeceEEEEEcCCC----ceEEeccCCCCCCCCCccceeEEEe------CCEEEEEecccCCCCcccCCCCCCc
Q 005655 205 -----VRYYNDLYVFDLDQF----KWQEIKPRFGSMWPSPRSGFQFFVY------QDEVFLYGGYSKEVSTDKNQSEKGI 269 (685)
Q Consensus 205 -----~~~~~dv~~yD~~t~----~W~~v~~~~~~~~P~~Rs~~s~~~~------~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (685)
.+|+||+|++++.-. -|...-.. +.+|.||-.|+++++ ..++|||||.++ .
T Consensus 162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~--Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G------------~ 227 (830)
T KOG4152|consen 162 PKNNVPRYLNDLYILELRPGSGVVAWDIPITY--GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG------------C 227 (830)
T ss_pred cccccchhhcceEEEEeccCCceEEEeccccc--CCCCCCcccceeEEEEeccCCcceEEEEccccc------------c
Confidence 359999999998843 48765544 778999999999998 457999999985 5
Q ss_pred eeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecc-----cCCccccccccCCcEEEEECCCCcEE
Q 005655 270 IHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDM-----EMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 270 ~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~-----~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
.+.|+|.+|+.+.+|.+....|.+|.||+-|+++++++++|||||.... ....+..+-.+.+.+-++|+++..|.
T Consensus 228 RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~ 307 (830)
T KOG4152|consen 228 RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWE 307 (830)
T ss_pred cccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchhee
Confidence 7999999999999999999999999999999999999999999997532 12222233456788999999999999
Q ss_pred EEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeecccccc
Q 005655 345 PLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLA 424 (685)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (685)
.|-..... |
T Consensus 308 tl~~d~~e-----------------------------------d------------------------------------ 316 (830)
T KOG4152|consen 308 TLLMDTLE-----------------------------------D------------------------------------ 316 (830)
T ss_pred eeeecccc-----------------------------------c------------------------------------
Confidence 98872100 0
Q ss_pred ccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCee---eccCeeeeeecccccccCCCC
Q 005655 425 AKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMM---EINDQEITLDDLYSLNLSKLD 494 (685)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~---e~g~re~tl~D~y~ldL~kld 494 (685)
...|.+|.+||++.++..|||+-|.- ..-+.++.+-|||-||..+..
T Consensus 317 -----------------------~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp 366 (830)
T KOG4152|consen 317 -----------------------NTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPP 366 (830)
T ss_pred -----------------------cccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCCC
Confidence 00699999999999999999999864 335678999999999988754
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=313.03 Aligned_cols=258 Identities=31% Similarity=0.534 Sum_probs=223.9
Q ss_pred CCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC-CCCCccceEEEECCEEEEEc
Q 005655 118 SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFG 196 (685)
Q Consensus 118 s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rsgh~~v~~~~~lyv~G 196 (685)
....|.+|.+|+++.+++.+|||||........ .+ ++|+||..+..|......+. |.+|++|++++++++||+||
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~---~~-dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLT---DL-DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCccc---cc-eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEc
Confidence 345689999999999999999999987764431 11 69999999999999888775 89999999999999999999
Q ss_pred cccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEE
Q 005655 197 GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (685)
Q Consensus 197 G~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (685)
|.... ..++++|+.||+.|.+|..+.+. +..|.+|.+|++++++++||||||.... +..++++|+
T Consensus 130 G~~~~---~~~~~~l~~~d~~t~~W~~l~~~--~~~P~~r~~Hs~~~~g~~l~vfGG~~~~----------~~~~ndl~i 194 (482)
T KOG0379|consen 130 GTDKK---YRNLNELHSLDLSTRTWSLLSPT--GDPPPPRAGHSATVVGTKLVVFGGIGGT----------GDSLNDLHI 194 (482)
T ss_pred cccCC---CCChhheEeccCCCCcEEEecCc--CCCCCCcccceEEEECCEEEEECCccCc----------ccceeeeee
Confidence 98752 33589999999999999999887 4579999999999999999999999876 238999999
Q ss_pred EeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhh
Q 005655 277 LDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKD 356 (685)
Q Consensus 277 yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~ 356 (685)
||+.+.+|.++...|..|.||.+|+|+++++++|||||.+.. ..+++|+|+||+.+..|..+...+
T Consensus 195 ~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~--------~~~l~D~~~ldl~~~~W~~~~~~g------ 260 (482)
T KOG0379|consen 195 YDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDG--------DVYLNDVHILDLSTWEWKLLPTGG------ 260 (482)
T ss_pred eccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccC--------CceecceEeeecccceeeeccccC------
Confidence 999999999999999999999999999999999999998721 467999999999999999555411
Q ss_pred hhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcc
Q 005655 357 KLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKK 436 (685)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (685)
T Consensus 261 -------------------------------------------------------------------------------- 260 (482)
T KOG0379|consen 261 -------------------------------------------------------------------------------- 260 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeeeeeecccccccCCCCccEEeccCC
Q 005655 437 KSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPAS 503 (685)
Q Consensus 437 ~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~w~~~~~~~ 503 (685)
-+|.||+.|++++.++++||+||.-.. ....+.|+|.|++.. ..|..+....
T Consensus 261 ------------~~p~~R~~h~~~~~~~~~~l~gG~~~~--~~~~l~~~~~l~~~~-~~w~~~~~~~ 312 (482)
T KOG0379|consen 261 ------------DLPSPRSGHSLTVSGDHLLLFGGGTDP--KQEPLGDLYGLDLET-LVWSKVESVG 312 (482)
T ss_pred ------------CCCCCcceeeeEEECCEEEEEcCCccc--ccccccccccccccc-cceeeeeccc
Confidence 069999999999999999999997643 112699999999996 8899998775
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=315.86 Aligned_cols=238 Identities=18% Similarity=0.309 Sum_probs=200.4
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCC
Q 005655 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPN 148 (685)
Q Consensus 69 R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~ 148 (685)
+..|+++++ ++.|||+||.... ....+++++||+.+++|..++++ |.+|.+|+++++++.|||+||....
T Consensus 285 ~~~~~~~~~---~~~lyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~~--~~~R~~~~~~~~~~~lyv~GG~~~~-- 354 (534)
T PHA03098 285 VYCFGSVVL---NNVIYFIGGMNKN---NLSVNSVVSYDTKTKSWNKVPEL--IYPRKNPGVTVFNNRIYVIGGIYNS-- 354 (534)
T ss_pred cccceEEEE---CCEEEEECCCcCC---CCeeccEEEEeCCCCeeeECCCC--CcccccceEEEECCEEEEEeCCCCC--
Confidence 445677777 8999999996322 23567999999999999988765 5789999999999999999998632
Q ss_pred CccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
..++++++||+.+++|+.+++ +|.+|++|++++++++|||+||..... ..++++++||+.+++|+.+.++
T Consensus 355 ----~~~~~v~~yd~~~~~W~~~~~--lp~~r~~~~~~~~~~~iYv~GG~~~~~---~~~~~v~~yd~~t~~W~~~~~~- 424 (534)
T PHA03098 355 ----ISLNTVESWKPGESKWREEPP--LIFPRYNPCVVNVNNLIYVIGGISKND---ELLKTVECFSLNTNKWSKGSPL- 424 (534)
T ss_pred ----EecceEEEEcCCCCceeeCCC--cCcCCccceEEEECCEEEEECCcCCCC---cccceEEEEeCCCCeeeecCCC-
Confidence 246899999999999999987 899999999999999999999975432 2478999999999999999877
Q ss_pred CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCe
Q 005655 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKR 308 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~ 308 (685)
|.+|++|+++++++.|||+||.... . ....++.+++||+.+++|+.+..+ |.+|.++++++++++
T Consensus 425 ----p~~r~~~~~~~~~~~iyv~GG~~~~--~------~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~ 489 (534)
T PHA03098 425 ----PISHYGGCAIYHDGKIYVIGGISYI--D------NIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCIFNNK 489 (534)
T ss_pred ----CccccCceEEEECCEEEEECCccCC--C------CCcccceEEEecCCCCceeeCCCC---CcccccceEEEECCE
Confidence 8899999999999999999998643 0 012356699999999999998753 678999999999999
Q ss_pred EEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecC
Q 005655 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (685)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (685)
||||||.... .+.+++++||+.+++|..+...+
T Consensus 490 iyv~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 490 IYVVGGDKYE---------YYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred EEEEcCCcCC---------cccceeEEEeCCCCEEEecCCCc
Confidence 9999998642 24688999999999999887644
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-31 Score=281.35 Aligned_cols=235 Identities=19% Similarity=0.291 Sum_probs=182.2
Q ss_pred eecCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcE----EEecCCCCCCCcceeEEEEEC
Q 005655 59 VEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSWK 134 (685)
Q Consensus 59 ~~~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W----~~l~s~~~P~~R~~ha~v~~~ 134 (685)
|....++|.+|.+++++++ ++.|||+||.. +. ..++++++||+.+++| ..+++ .|.+|.+|++++++
T Consensus 53 W~~~~~lp~~r~~~~~~~~---~~~lyviGG~~--~~--~~~~~v~~~d~~~~~w~~~~~~~~~--lp~~~~~~~~~~~~ 123 (323)
T TIGR03548 53 WVKDGQLPYEAAYGASVSV---ENGIYYIGGSN--SS--ERFSSVYRITLDESKEELICETIGN--LPFTFENGSACYKD 123 (323)
T ss_pred EEEcccCCccccceEEEEE---CCEEEEEcCCC--CC--CCceeEEEEEEcCCceeeeeeEcCC--CCcCccCceEEEEC
Confidence 4455778999998888888 79999999963 22 2468999999999998 45544 47889999999999
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCC-CCCccceEEEECCEEEEEccccCCCCceeeeceEEE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P-~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
++|||+||.... ..++++|+||+.+++|+.+++ +| .+|.+|++++++++||||||+... ...++++
T Consensus 124 ~~iYv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~--~p~~~r~~~~~~~~~~~iYv~GG~~~~-----~~~~~~~ 190 (323)
T TIGR03548 124 GTLYVGGGNRNG------KPSNKSYLFNLETQEWFELPD--FPGEPRVQPVCVKLQNELYVFGGGSNI-----AYTDGYK 190 (323)
T ss_pred CEEEEEeCcCCC------ccCceEEEEcCCCCCeeECCC--CCCCCCCcceEEEECCEEEEEcCCCCc-----cccceEE
Confidence 999999997432 136899999999999999987 65 479999999999999999998532 2467899
Q ss_pred EEcCCCceEEeccCCCCCCCCCccceeEEE-eCCEEEEEecccCCCCcc---------------------cCCCCCCcee
Q 005655 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFV-YQDEVFLYGGYSKEVSTD---------------------KNQSEKGIIH 271 (685)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~-~~~~Iyv~GG~~~~~~~~---------------------~~~~~~~~~~ 271 (685)
||+.+++|+.+++++....|.++.+++.++ .++.|||+||++...... ........+.
T Consensus 191 yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (323)
T TIGR03548 191 YSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWN 270 (323)
T ss_pred EecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcC
Confidence 999999999998874333455555555544 479999999987430000 0000111234
Q ss_pred eeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceec
Q 005655 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317 (685)
Q Consensus 272 ~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~ 317 (685)
+++++||+.+++|+.+..+ +..+|+++++++++++||||||...
T Consensus 271 ~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 271 RKILIYNVRTGKWKSIGNS--PFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred ceEEEEECCCCeeeEcccc--cccccCchheEEECCEEEEEecccc
Confidence 7799999999999999753 2358999999999999999999754
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-31 Score=294.39 Aligned_cols=208 Identities=17% Similarity=0.232 Sum_probs=181.4
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
++.||++||.. + ....+.+++|||.+++|..++++ |.+|..|+++++++.||++||... .+.+++
T Consensus 271 ~~~lyviGG~~--~--~~~~~~v~~Ydp~~~~W~~~~~m--~~~r~~~~~v~~~~~iYviGG~~~---------~~sve~ 335 (480)
T PHA02790 271 GEVVYLIGGWM--N--NEIHNNAIAVNYISNNWIPIPPM--NSPRLYASGVPANNKLYVVGGLPN---------PTSVER 335 (480)
T ss_pred CCEEEEEcCCC--C--CCcCCeEEEEECCCCEEEECCCC--CchhhcceEEEECCEEEEECCcCC---------CCceEE
Confidence 79999999952 2 12567899999999999999886 578999999999999999999642 256899
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s 240 (685)
||+.+++|..+++ ||.+|.+|++++++++||++||.... .+.+++|||.+++|+.++++ |.||.+|+
T Consensus 336 ydp~~n~W~~~~~--l~~~r~~~~~~~~~g~IYviGG~~~~------~~~ve~ydp~~~~W~~~~~m-----~~~r~~~~ 402 (480)
T PHA02790 336 WFHGDAAWVNMPS--LLKPRCNPAVASINNVIYVIGGHSET------DTTTEYLLPNHDQWQFGPST-----YYPHYKSC 402 (480)
T ss_pred EECCCCeEEECCC--CCCCCcccEEEEECCEEEEecCcCCC------CccEEEEeCCCCEEEeCCCC-----CCccccce
Confidence 9999999999988 89999999999999999999997532 36799999999999999888 89999999
Q ss_pred EEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccC
Q 005655 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (685)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (685)
++++++.|||+||. +.+|||.+++|+.++++ |.+|.++++++++++|||+||...
T Consensus 403 ~~~~~~~IYv~GG~-------------------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~--- 457 (480)
T PHA02790 403 ALVFGRRLFLVGRN-------------------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYR--- 457 (480)
T ss_pred EEEECCEEEEECCc-------------------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCC---
Confidence 99999999999984 45799999999999764 779999999999999999999853
Q ss_pred CccccccccCCcEEEEECCCCcEEEEE
Q 005655 321 KGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
....+.+++||+.+++|+...
T Consensus 458 ------~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 458 ------GSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred ------CcccceEEEEECCCCeEEecC
Confidence 123578999999999998754
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=276.18 Aligned_cols=258 Identities=20% Similarity=0.259 Sum_probs=186.9
Q ss_pred cCCCCC-CCCcceEEEEeccCCCEEEEEcCeecCC--CceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEE-EECCE
Q 005655 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV-SWKNY 136 (685)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~p~~~~~L~vfGG~~~~g--~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v-~~~~~ 136 (685)
..+++| .+|.+|+++++ ++.|||+||..... .....++++++|||.+++|+.++. ..|.+|.+|+++ +++++
T Consensus 45 ~l~~~p~~~R~~~~~~~~---~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~ 120 (346)
T TIGR03547 45 KIADFPGGPRNQAVAAAI---DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQ 120 (346)
T ss_pred ECCCCCCCCcccceEEEE---CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCE
Confidence 456677 58999999999 89999999963222 112357899999999999999974 347788888877 68999
Q ss_pred EEEEcCccCCCCC----------------------------ccccccCeEEEEECCCCcEEEcccCCCCC-CCccceEEE
Q 005655 137 LYIFGGEFTSPNQ----------------------------ERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVL 187 (685)
Q Consensus 137 iyvfGG~~~s~~~----------------------------~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-~Rsgh~~v~ 187 (685)
|||+||....... .....++++++||+.+++|+.+++ +|. +|.+|++++
T Consensus 121 IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~--~p~~~r~~~~~~~ 198 (346)
T TIGR03547 121 AYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE--NPFLGTAGSAIVH 198 (346)
T ss_pred EEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc--CCCCcCCCceEEE
Confidence 9999997532000 000124789999999999999987 775 789999999
Q ss_pred ECCEEEEEccccCCCCceeeeceEEEEE--cCCCceEEeccCCCCC--CCCCccceeEEEeCCEEEEEecccCCCCcc--
Q 005655 188 YKHKIIVFGGFYDTLREVRYYNDLYVFD--LDQFKWQEIKPRFGSM--WPSPRSGFQFFVYQDEVFLYGGYSKEVSTD-- 261 (685)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~~yD--~~t~~W~~v~~~~~~~--~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~-- 261 (685)
++++||||||..... .....++.|+ +.+++|+.+++++... .+..|.+|++++++++|||+||+.......
T Consensus 199 ~~~~iyv~GG~~~~~---~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~ 275 (346)
T TIGR03547 199 KGNKLLLINGEIKPG---LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENY 275 (346)
T ss_pred ECCEEEEEeeeeCCC---ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhh
Confidence 999999999985432 1234566665 5678999999883211 122345677888899999999986320000
Q ss_pred -cCC---CCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEE
Q 005655 262 -KNQ---SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (685)
Q Consensus 262 -~~~---~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (685)
... ......+..+.+||+.+++|+.+.++ |.+|.++++++++++||||||.... ...+++|+.|-
T Consensus 276 ~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~--------~~~~~~v~~~~ 344 (346)
T TIGR03547 276 KNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL---PQGLAYGVSVSWNNGVLLIGGENSG--------GKAVTDVYLLS 344 (346)
T ss_pred hcCCccccCCCCceeEeeEEEecCCcccccCCC---CCCceeeEEEEcCCEEEEEeccCCC--------CCEeeeEEEEE
Confidence 000 00001234688999999999999764 7789999988999999999998642 34578888775
Q ss_pred C
Q 005655 338 L 338 (685)
Q Consensus 338 ~ 338 (685)
+
T Consensus 345 ~ 345 (346)
T TIGR03547 345 W 345 (346)
T ss_pred e
Confidence 3
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=288.15 Aligned_cols=211 Identities=17% Similarity=0.242 Sum_probs=182.9
Q ss_pred EEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeec
Q 005655 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYN 209 (685)
Q Consensus 130 ~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~ 209 (685)
++.+++.||++||.... ...+.+|+||+.+++|..+++ ||.+|..|++++++++||++||... .+
T Consensus 267 ~~~~~~~lyviGG~~~~------~~~~~v~~Ydp~~~~W~~~~~--m~~~r~~~~~v~~~~~iYviGG~~~-------~~ 331 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN------EIHNNAIAVNYISNNWIPIPP--MNSPRLYASGVPANNKLYVVGGLPN-------PT 331 (480)
T ss_pred eEEECCEEEEEcCCCCC------CcCCeEEEEECCCCEEEECCC--CCchhhcceEEEECCEEEEECCcCC-------CC
Confidence 34579999999997532 246889999999999999998 8999999999999999999999743 25
Q ss_pred eEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
++++||+.+++|..++++ |.+|.+|++++++++||++||.... .+.+.+|||.+++|+.+++
T Consensus 332 sve~ydp~~n~W~~~~~l-----~~~r~~~~~~~~~g~IYviGG~~~~-------------~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 332 SVERWFHGDAAWVNMPSL-----LKPRCNPAVASINNVIYVIGGHSET-------------DTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred ceEEEECCCCeEEECCCC-----CCCCcccEEEEECCEEEEecCcCCC-------------CccEEEEeCCCCEEEeCCC
Confidence 789999999999999888 8999999999999999999997532 2458899999999999876
Q ss_pred CCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCch
Q 005655 290 IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369 (685)
Q Consensus 290 ~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (685)
+ |.+|.++++++++++|||+||. +.+||+.+++|+.++.
T Consensus 394 m---~~~r~~~~~~~~~~~IYv~GG~-----------------~e~ydp~~~~W~~~~~--------------------- 432 (480)
T PHA02790 394 T---YYPHYKSCALVFGRRLFLVGRN-----------------AEFYCESSNTWTLIDD--------------------- 432 (480)
T ss_pred C---CCccccceEEEECCEEEEECCc-----------------eEEecCCCCcEeEcCC---------------------
Confidence 4 7799999999999999999984 5689999999997764
Q ss_pred hhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCC
Q 005655 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIV 449 (685)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (685)
T Consensus 433 -------------------------------------------------------------------------------- 432 (480)
T PHA02790 433 -------------------------------------------------------------------------------- 432 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcceeeEEecCEEEEEcCeeeccCeeeeeecccccccCCCCccEEe
Q 005655 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (685)
Q Consensus 450 ~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~w~~~ 499 (685)
+|.||.+++++|+++.|||+||... . ..++.+.+||+.+ |.|+..
T Consensus 433 m~~~r~~~~~~v~~~~IYviGG~~~--~--~~~~~ve~Yd~~~-~~W~~~ 477 (480)
T PHA02790 433 PIYPRDNPELIIVDNKLLLIGGFYR--G--SYIDTIEVYNNRT-YSWNIW 477 (480)
T ss_pred CCCCccccEEEEECCEEEEECCcCC--C--cccceEEEEECCC-CeEEec
Confidence 7899999999999999999999752 1 2368899999998 999754
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=276.30 Aligned_cols=257 Identities=21% Similarity=0.283 Sum_probs=188.8
Q ss_pred CCCCC-CCCcceEEEEeccCCCEEEEEcCeecCC--CceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEE-ECCEE
Q 005655 62 NVPAP-SPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNYL 137 (685)
Q Consensus 62 ~~~~P-~~R~~~s~~~~p~~~~~L~vfGG~~~~g--~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~-~~~~i 137 (685)
..++| .+|.+|+++++ ++.||||||..... .....++++|+||+.+++|+.++++ .|.+|.+|++++ ++++|
T Consensus 67 l~~~p~~~r~~~~~v~~---~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~~~I 142 (376)
T PRK14131 67 IAAFPGGPREQAVAAFI---DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHNGKA 142 (376)
T ss_pred CCcCCCCCcccceEEEE---CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeCCEE
Confidence 34555 58999999998 89999999963211 1124678999999999999999753 477788888887 79999
Q ss_pred EEEcCccCCCC----------------------------CccccccCeEEEEECCCCcEEEcccCCCCC-CCccceEEEE
Q 005655 138 YIFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVLY 188 (685)
Q Consensus 138 yvfGG~~~s~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-~Rsgh~~v~~ 188 (685)
|||||...... ...+...+++++||+.+++|+.+.+ +|. +|.+|+++++
T Consensus 143 Yv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~--~p~~~~~~~a~v~~ 220 (376)
T PRK14131 143 YITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE--SPFLGTAGSAVVIK 220 (376)
T ss_pred EEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc--CCCCCCCcceEEEE
Confidence 99999753100 0000124789999999999999887 674 7899999999
Q ss_pred CCEEEEEccccCCCCceeeeceEE--EEEcCCCceEEeccCCCCCCCCCcc--------ceeEEEeCCEEEEEecccCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLY--VFDLDQFKWQEIKPRFGSMWPSPRS--------GFQFFVYQDEVFLYGGYSKEV 258 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~--~yD~~t~~W~~v~~~~~~~~P~~Rs--------~~s~~~~~~~Iyv~GG~~~~~ 258 (685)
+++||||||....+. ....++ .||+.+++|..+..+ |.+|. ++.+++++++|||+||....
T Consensus 221 ~~~iYv~GG~~~~~~---~~~~~~~~~~~~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~- 291 (376)
T PRK14131 221 GNKLWLINGEIKPGL---RTDAVKQGKFTGNNLKWQKLPDL-----PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFP- 291 (376)
T ss_pred CCEEEEEeeeECCCc---CChhheEEEecCCCcceeecCCC-----CCCCcCCcCCccceEeceeECCEEEEeeccCCC-
Confidence 999999999754321 234455 457789999999987 44442 33456779999999998643
Q ss_pred CcccCCCCCC--------ceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccC
Q 005655 259 STDKNQSEKG--------IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFL 330 (685)
Q Consensus 259 ~~~~~~~~~~--------~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ 330 (685)
........+ .....+.+||+.+++|+.+.. .|.+|.++++++++++||||||.... ...+
T Consensus 292 -~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~---lp~~r~~~~av~~~~~iyv~GG~~~~--------~~~~ 359 (376)
T PRK14131 292 -GARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE---LPQGLAYGVSVSWNNGVLLIGGETAG--------GKAV 359 (376)
T ss_pred -CChhhhhcCCcccccCCcceeehheEEecCCcccccCc---CCCCccceEEEEeCCEEEEEcCCCCC--------CcEe
Confidence 100000000 011346789999999998864 48899999999999999999997542 2357
Q ss_pred CcEEEEECCCCcEEE
Q 005655 331 NELYGFQLDNHRWYP 345 (685)
Q Consensus 331 ndl~~yd~~t~~W~~ 345 (685)
++|++|++..+.|..
T Consensus 360 ~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 360 SDVTLLSWDGKKLTV 374 (376)
T ss_pred eeEEEEEEcCCEEEE
Confidence 899999999887763
|
|
| >PF13422 DUF4110: Domain of unknown function (DUF4110) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-30 Score=220.16 Aligned_cols=88 Identities=52% Similarity=0.721 Sum_probs=78.7
Q ss_pred hcCCCCCCCCCCCCCchhHHhhccHHHHHHHHHhcCC--CCcchhhHhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhC
Q 005655 588 NLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ--HTGKELRKDGFDLAEARYRELKPILDELAVLEAEQKAEEAE 665 (685)
Q Consensus 588 ~~~~~d~~~~p~~~e~l~~f~~rt~~~w~~~~~~~~~--~~~k~l~~~~f~la~~r~~e~~~~l~~~~~le~~~~~~~~~ 665 (685)
+++++|.+|||+||||||+||+||++||+++|+++.. ++||+|||+||+||++|||||||+|++|+.++++|+..+
T Consensus 2 ~~~~~d~~ptP~p~EsLr~Ff~RT~~~W~~~a~~~~~~~~~~KeLrk~aF~lAe~Ry~E~k~~l~~le~~~ee~~~~e-- 79 (96)
T PF13422_consen 2 QPDLDDWLPTPKPFESLRDFFARTSEYWQEWAIESNRDAHRGKELRKDAFDLAEERYWELKPELDELEDLEEEQAGIE-- 79 (96)
T ss_pred CCCCccCCCCCCCCCcHHHHHHHhHHHHHHHHHHccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--
Confidence 5788999999999999999999999999999999887 789999999999999999999999999999999999888
Q ss_pred CCCccccccccc
Q 005655 666 GPETTSRKRGKK 677 (685)
Q Consensus 666 ~~~~~~~~~~~~ 677 (685)
+....++++++.
T Consensus 80 e~~~~~~~~~~~ 91 (96)
T PF13422_consen 80 EVVSRDKRKSWE 91 (96)
T ss_pred HHhhhccccccc
Confidence 444445555443
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-29 Score=260.31 Aligned_cols=216 Identities=27% Similarity=0.570 Sum_probs=184.3
Q ss_pred CcEEEecC--CCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC-CCCCccceEEE
Q 005655 111 QEWKVISS--PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVL 187 (685)
Q Consensus 111 ~~W~~l~s--~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rsgh~~v~ 187 (685)
-.|+.+.. .+.|.||.+|-+|++..-|+||||-+.. ..+.+..||..+++|.-....|. |.+...|+.+.
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-------iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-------IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCccc-------chhhhhhhccccceeecchhcCCCCCchhhcceEe
Confidence 36887753 4458889999999999999999996554 46789999999999997766554 88889999999
Q ss_pred ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC--CCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCC
Q 005655 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR--FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (685)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~--~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (685)
.+.+||+|||+...+ +|.|++|.+......|.++.+. +.+..|.||.||++.+++++.|+|||.... .....+
T Consensus 90 dGtrilvFGGMvEYG---kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNd--seDpkn 164 (830)
T KOG4152|consen 90 DGTRILVFGGMVEYG---KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAND--SEDPKN 164 (830)
T ss_pred cCceEEEEccEeeec---cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccc--ccCccc
Confidence 999999999997654 4899999998889999999765 456789999999999999999999999876 444455
Q ss_pred CCCceeeeEEEEeCCC----ceeEEeecCCCCCCCcceeEEEEE------CCeEEEecceecccCCccccccccCCcEEE
Q 005655 266 EKGIIHSDLWSLDPRT----WEWSKVKKIGMPPGPRAGFSMCVH------KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (685)
Q Consensus 266 ~~~~~~~dv~~yd~~t----~~W~~~~~~g~~P~~R~g~s~~~~------~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~ 335 (685)
....+++|+|.+.+.. -.|......|..|.+|-.|+++++ ..++|||||.++ ..+.|||.
T Consensus 165 NvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G----------~RLgDLW~ 234 (830)
T KOG4152|consen 165 NVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG----------CRLGDLWT 234 (830)
T ss_pred ccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc----------ccccceeE
Confidence 5678999999999763 479999999999999999999998 357999999975 45899999
Q ss_pred EECCCCcEEEEEe
Q 005655 336 FQLDNHRWYPLEL 348 (685)
Q Consensus 336 yd~~t~~W~~l~~ 348 (685)
+|++|..|....+
T Consensus 235 Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 235 LDLDTLTWNKPSL 247 (830)
T ss_pred Eecceeecccccc
Confidence 9999999998776
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-20 Score=199.33 Aligned_cols=264 Identities=22% Similarity=0.362 Sum_probs=189.9
Q ss_pred CCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCC-CCCCcceeEEEEEC--CEEEEE
Q 005655 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSWK--NYLYIF 140 (685)
Q Consensus 64 ~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~~R~~ha~v~~~--~~iyvf 140 (685)
..|..|.||.++..+- .+.||++|| ++|-. .+.|+|.|+...+.|..+.... .|..|+.|-+|..- .+||+.
T Consensus 256 ~~p~~RgGHQMV~~~~-~~CiYLYGG--WdG~~--~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLl 330 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQ-TECVYLYGG--WDGTQ--DLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLL 330 (723)
T ss_pred cCccccCcceEEEeCC-CcEEEEecC--cccch--hHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhh
Confidence 5789999999999974 379999999 56644 5789999999999999886554 78999999999985 489999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEccc----CCCCCCCccceEEEECCE--EEEEccccCCCCceeeeceEEEE
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL----KGCPSPRSGHRMVLYKHK--IIVFGGFYDTLREVRYYNDLYVF 214 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~----~g~P~~Rsgh~~v~~~~~--lyv~GG~~~~~~~~~~~~dv~~y 214 (685)
|-+..+...+.+..-.|+|+||..++.|..+.. .|.|...+.|.|++...+ ||||||..-... ...+.-+|.|
T Consensus 331 G~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~-e~~f~GLYaf 409 (723)
T KOG2437|consen 331 GRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCN-EPQFSGLYAF 409 (723)
T ss_pred hhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCC-CccccceEEE
Confidence 999888777777778999999999999998753 256999999999999776 999999864332 2246789999
Q ss_pred EcCCCceEEeccCC--CC---CCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 215 DLDQFKWQEIKPRF--GS---MWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 215 D~~t~~W~~v~~~~--~~---~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
|+....|..+...- .+ ..-..|.||+|-++ +..+|++||.... .-++-.+.|++....=..+
T Consensus 410 ~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~-----------~El~L~f~y~I~~E~~~~~ 478 (723)
T KOG2437|consen 410 NCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK-----------TELNLFFSYDIDSEHVDII 478 (723)
T ss_pred ecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc-----------eEEeehhcceeccccchhh
Confidence 99999998775431 11 11346888888776 8899999998765 4555567776543222211
Q ss_pred e---c--CCCCCCCcceeEEEEE---CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 288 K---K--IGMPPGPRAGFSMCVH---KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 288 ~---~--~g~~P~~R~g~s~~~~---~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+ + ....|++- .+.-++. .++|.+.-|........ +....|.+|+|++.++.|..+..
T Consensus 479 s~~~k~dsS~~pS~~-f~qRs~~dp~~~~i~~~~G~~~~~~~~---e~~~rns~wi~~i~~~~w~cI~~ 543 (723)
T KOG2437|consen 479 SDGTKKDSSMVPSTG-FTQRATIDPELNEIHVLSGLSKDKEKR---EENVRNSFWIYDIVRNSWSCIYK 543 (723)
T ss_pred hccCcCccccCCCcc-hhhhcccCCCCcchhhhcccchhccCc---cccccCcEEEEEecccchhhHhh
Confidence 1 1 11122221 1111222 45666655543322111 23458999999999999987654
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-17 Score=166.44 Aligned_cols=258 Identities=20% Similarity=0.298 Sum_probs=186.5
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCC--CcEEEecCCCCCCCcceeEEEEECCEEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (685)
..+..|.+--+-+-..+ ++.+||-=|. .| ...|..|+.. ..|+.++.-+ -.+|.+..+++++++||
T Consensus 29 ~lPdlPvg~KnG~Ga~i---g~~~YVGLGs--~G------~afy~ldL~~~~k~W~~~a~Fp-G~~rnqa~~a~~~~kLy 96 (381)
T COG3055 29 QLPDLPVGFKNGAGALI---GDTVYVGLGS--AG------TAFYVLDLKKPGKGWTKIADFP-GGARNQAVAAVIGGKLY 96 (381)
T ss_pred cCCCCCcccccccccee---cceEEEEecc--CC------ccceehhhhcCCCCceEcccCC-CcccccchheeeCCeEE
Confidence 44566776655555566 6788876552 12 3567788765 4799998764 35899999999999999
Q ss_pred EEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECC-EEEEEccccCC----------------
Q 005655 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDT---------------- 201 (685)
Q Consensus 139 vfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~-~lyv~GG~~~~---------------- 201 (685)
||||...+.. .....++++++||+.+++|.++.+. .|....+|.++.+++ .||++||++..
T Consensus 97 vFgG~Gk~~~-~~~~~~nd~Y~y~p~~nsW~kl~t~-sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~ 174 (381)
T COG3055 97 VFGGYGKSVS-SSPQVFNDAYRYDPSTNSWHKLDTR-SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDK 174 (381)
T ss_pred EeeccccCCC-CCceEeeeeEEecCCCChhheeccc-cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccH
Confidence 9999876554 3356799999999999999999874 388889999999988 99999997421
Q ss_pred --------------CCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCC
Q 005655 202 --------------LREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (685)
Q Consensus 202 --------------~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~ 267 (685)
..+..+...|+.|+|.+++|..+...| -.+++|.+++.-++.|.++-|.-+.
T Consensus 175 ~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p----f~~~aGsa~~~~~n~~~lInGEiKp---------- 240 (381)
T COG3055 175 EAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP----FYGNAGSAVVIKGNKLTLINGEIKP---------- 240 (381)
T ss_pred HHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc----ccCccCcceeecCCeEEEEcceecC----------
Confidence 112346778999999999999988553 4677886666668889999998764
Q ss_pred CceeeeEEEEeCC--CceeEEeecCCCCCC----CcceeEEEEECCeEEEecceecccCC----------ccccccccCC
Q 005655 268 GIIHSDLWSLDPR--TWEWSKVKKIGMPPG----PRAGFSMCVHKKRALLFGGVVDMEMK----------GDVIMSLFLN 331 (685)
Q Consensus 268 ~~~~~dv~~yd~~--t~~W~~~~~~g~~P~----~R~g~s~~~~~~~iyvfGG~~~~~~~----------~~~~~~~~~n 331 (685)
+.....+++++.. ..+|..+.....++. ..+|+-.-..++.++|.||.+-.+.- .+.+.-.+.+
T Consensus 241 GLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~ 320 (381)
T COG3055 241 GLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNS 320 (381)
T ss_pred CccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhc
Confidence 4556667777754 568999876432222 22333333457889999987543211 1235556778
Q ss_pred cEEEEECCCCcEEEEEe
Q 005655 332 ELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 332 dl~~yd~~t~~W~~l~~ 348 (685)
+||+|| ++.|..+.-
T Consensus 321 ~Vy~~d--~g~Wk~~Ge 335 (381)
T COG3055 321 EVYIFD--NGSWKIVGE 335 (381)
T ss_pred eEEEEc--CCceeeecc
Confidence 899999 889987654
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=148.65 Aligned_cols=254 Identities=19% Similarity=0.266 Sum_probs=177.1
Q ss_pred CCCCCcceEEEEeccCCCEEEEEcCeecCCC-ceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECC-EEEEEcC
Q 005655 65 APSPRSNCSLNINPLKETELILYGGEFYNGN-KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGG 142 (685)
Q Consensus 65 ~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~-~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~-~iyvfGG 142 (685)
|-.+|.+...+++ +++||||||...... ....++++|+|||.+|+|.++.... |..-.+|+++.+++ .||++||
T Consensus 79 pG~~rnqa~~a~~---~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~G~~~~~~~~~~i~f~GG 154 (381)
T COG3055 79 PGGARNQAVAAVI---GGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLVGASTFSLNGTKIYFFGG 154 (381)
T ss_pred CCcccccchheee---CCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccccccceeEecCCceEEEEcc
Confidence 4458899999999 899999999743332 3468999999999999999997654 67788999999976 9999999
Q ss_pred ccCCCCC----------------------------ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEE
Q 005655 143 EFTSPNQ----------------------------ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194 (685)
Q Consensus 143 ~~~s~~~----------------------------~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv 194 (685)
.+..... ..+.....|+.|++.++.|+.+... .-.+++|++.+.-+|+|.+
T Consensus 155 vn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~-pf~~~aGsa~~~~~n~~~l 233 (381)
T COG3055 155 VNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN-PFYGNAGSAVVIKGNKLTL 233 (381)
T ss_pred ccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcC-cccCccCcceeecCCeEEE
Confidence 6422110 0122356899999999999988752 2467888666666888999
Q ss_pred EccccCCCCceeeeceEEEEEcC--CCceEEeccCCCCC--CCCCccceeEEEeCCEEEEEecccCCCCc--------cc
Q 005655 195 FGGFYDTLREVRYYNDLYVFDLD--QFKWQEIKPRFGSM--WPSPRSGFQFFVYQDEVFLYGGYSKEVST--------DK 262 (685)
Q Consensus 195 ~GG~~~~~~~~~~~~dv~~yD~~--t~~W~~v~~~~~~~--~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~--------~~ 262 (685)
+-|.--.+- ....+++++.. .-+|..+...|... -+....|+-.-..++.++|.||....-.. -.
T Consensus 234 InGEiKpGL---Rt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~A 310 (381)
T COG3055 234 INGEIKPGL---RTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYA 310 (381)
T ss_pred EcceecCCc---cccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhccccc
Confidence 988754332 24456666664 56899997764211 11334444444558899999987533000 00
Q ss_pred CCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECC
Q 005655 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 263 ~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
........+++||.|| .+.|..+.. +|.++++..++..++.+|++||.+... .....|+.+-..
T Consensus 311 H~Gl~K~w~~~Vy~~d--~g~Wk~~Ge---Lp~~l~YG~s~~~nn~vl~IGGE~~~G--------ka~~~v~~l~~~ 374 (381)
T COG3055 311 HEGLSKSWNSEVYIFD--NGSWKIVGE---LPQGLAYGVSLSYNNKVLLIGGETSGG--------KATTRVYSLSWD 374 (381)
T ss_pred ccchhhhhhceEEEEc--CCceeeecc---cCCCccceEEEecCCcEEEEccccCCC--------eeeeeEEEEEEc
Confidence 1122335678999999 889999855 577888888888899999999987643 334555555443
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-16 Score=163.14 Aligned_cols=208 Identities=25% Similarity=0.462 Sum_probs=159.2
Q ss_pred CCcEEEecCC--------CCCCCcceeEEEEEC--CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CCC
Q 005655 110 KQEWKVISSP--------NSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS 178 (685)
Q Consensus 110 ~~~W~~l~s~--------~~P~~R~~ha~v~~~--~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~ 178 (685)
+-.|.+++.. ..|..|.+|++|... +.||++||+++.. .+.|+|.|+...+.|+.+...+ .|.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~------~l~DFW~Y~v~e~~W~~iN~~t~~PG 311 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ------DLADFWAYSVKENQWTCINRDTEGPG 311 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch------hHHHHHhhcCCcceeEEeecCCCCCc
Confidence 4567765432 468899999999985 4999999998864 4799999999999999987655 599
Q ss_pred CCccceEEEECC--EEEEEccccCCCCcee--eeceEEEEEcCCCceEEeccCCC-CCCCCCccceeEEEeCCE--EEEE
Q 005655 179 PRSGHRMVLYKH--KIIVFGGFYDTLREVR--YYNDLYVFDLDQFKWQEIKPRFG-SMWPSPRSGFQFFVYQDE--VFLY 251 (685)
Q Consensus 179 ~Rsgh~~v~~~~--~lyv~GG~~~~~~~~~--~~~dv~~yD~~t~~W~~v~~~~~-~~~P~~Rs~~s~~~~~~~--Iyv~ 251 (685)
.|+.|+||..-. +||+.|-+-+.++.+. .-.|+|.||+.++.|.-+..... ...|...+.|+|++.+++ |||+
T Consensus 312 ~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVf 391 (723)
T KOG2437|consen 312 ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVF 391 (723)
T ss_pred chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEe
Confidence 999999998854 9999999987655433 35699999999999999876543 134889999999999666 9999
Q ss_pred ecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC-------CCCCCcceeEEEEE--CCeEEEecceecccCCc
Q 005655 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-------MPPGPRAGFSMCVH--KKRALLFGGVVDMEMKG 322 (685)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g-------~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~ 322 (685)
||..-.+. ...+.-+|.|+.....|..++.-- ..-..|.||.|-++ ++.+|+|||....
T Consensus 392 GGr~~~~~--------e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~---- 459 (723)
T KOG2437|consen 392 GGRILTCN--------EPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK---- 459 (723)
T ss_pred cCeeccCC--------CccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc----
Confidence 99876511 134567999999999999875310 01235888888777 6789999997532
Q ss_pred cccccccCCcEEEEECCC
Q 005655 323 DVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 323 ~~~~~~~~ndl~~yd~~t 340 (685)
+-++-+++|++..
T Consensus 460 -----~El~L~f~y~I~~ 472 (723)
T KOG2437|consen 460 -----TELNLFFSYDIDS 472 (723)
T ss_pred -----eEEeehhcceecc
Confidence 2255567776644
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.3e-10 Score=85.49 Aligned_cols=50 Identities=42% Similarity=0.591 Sum_probs=45.0
Q ss_pred CcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 124 ~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
||.+|++|+++++||||||.... ...++++|+||+.|++|+.+++ ||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~--mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-----GKYSNDVERYDPETNTWEQLPP--MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-----CCccccEEEEcCCCCcEEECCC--CCCCC
Confidence 69999999999999999998774 2367999999999999999998 88887
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.2e-10 Score=84.74 Aligned_cols=50 Identities=40% Similarity=0.833 Sum_probs=44.8
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCc
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (685)
||.+|++|+++++||||||.... ..+++++++||+.+++|++++++ |.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~m-----p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPPM-----PTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC---CCccccEEEEcCCCCcEEECCCC-----CCCC
Confidence 69999999999999999998764 34789999999999999999988 7666
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.4e-09 Score=78.79 Aligned_cols=49 Identities=39% Similarity=0.748 Sum_probs=41.6
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~ 188 (685)
+++||||||..... ...++++|+||+.+++|+++.. +|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~----~~~~nd~~~~~~~~~~W~~~~~--~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG----GTRLNDVWVFDLDTNTWTRIGD--LPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCC----CCEecCEEEEECCCCEEEECCC--CCCCccceEEEEC
Confidence 57899999988422 2368999999999999999955 7999999999874
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-08 Score=77.03 Aligned_cols=49 Identities=29% Similarity=0.579 Sum_probs=40.7
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW 133 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~ 133 (685)
+++||||||... .....+|++|+||+.+++|+.+ +..|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~--~~~~~~nd~~~~~~~~~~W~~~--~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDD--DGGTRLNDVWVFDLDTNTWTRI--GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCC--CCCCEecCEEEEECCCCEEEEC--CCCCCCccceEEEEC
Confidence 478999999742 2345789999999999999999 446899999999874
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.4e-07 Score=90.28 Aligned_cols=234 Identities=20% Similarity=0.240 Sum_probs=137.6
Q ss_pred eEEEee-cCCCCCCCCcceEEEE-eccCC--CEEEEEcCeecCCCceeeeccEEEEEcCCCc-EEEec--------CCCC
Q 005655 55 KEVHVE-DNVPAPSPRSNCSLNI-NPLKE--TELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WKVIS--------SPNS 121 (685)
Q Consensus 55 ~~~~~~-~~~~~P~~R~~~s~~~-~p~~~--~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~-W~~l~--------s~~~ 121 (685)
..+... ..+-.|+.|.-+.+.. .|..+ ...+|.||...|+. ..+.+|+....+.. =++++ .+..
T Consensus 8 rp~sFsndSCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE---lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdv 84 (337)
T PF03089_consen 8 RPISFSNDSCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE---LSSSLYILSVDSRGCNKKVTLCCQEKELVGDV 84 (337)
T ss_pred cceeecCCcccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc---cccceEEEEeecCCCCceeEEEEecceecCCC
Confidence 334442 4457777777666555 33322 34667788766554 67789998876543 11221 2457
Q ss_pred CCCcceeEEEEE----CCEEEEEcCccCCCCCc--------cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEEC
Q 005655 122 PPPRSAHQAVSW----KNYLYIFGGEFTSPNQE--------RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189 (685)
Q Consensus 122 P~~R~~ha~v~~----~~~iyvfGG~~~s~~~~--------~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~ 189 (685)
|.+|++|++.++ ...+++|||...-+... ...+.-.|+.+|+.-+.++.-..+-+..+-+.|.+.+-+
T Consensus 85 P~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~ 164 (337)
T PF03089_consen 85 PEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARN 164 (337)
T ss_pred CcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecC
Confidence 899999999887 24589999975433221 223456789999999888766554467889999999999
Q ss_pred CEEEEEccccCCCCceeeeceEEEEEcC---CCceEEeccCCCCCCCCCccceeEEEe---CCEEEEEecccCCCCcccC
Q 005655 190 HKIIVFGGFYDTLREVRYYNDLYVFDLD---QFKWQEIKPRFGSMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKN 263 (685)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~~---t~~W~~v~~~~~~~~P~~Rs~~s~~~~---~~~Iyv~GG~~~~~~~~~~ 263 (685)
+.+|++||..-... . ....++++... -.-+-..... +...+-.++++. .+..+|+|||... .
T Consensus 165 D~VYilGGHsl~sd-~-Rpp~l~rlkVdLllGSP~vsC~vl-----~~glSisSAIvt~~~~~e~iIlGGY~sd--s--- 232 (337)
T PF03089_consen 165 DCVYILGGHSLESD-S-RPPRLYRLKVDLLLGSPAVSCTVL-----QGGLSISSAIVTQTGPHEYIILGGYQSD--S--- 232 (337)
T ss_pred ceEEEEccEEccCC-C-CCCcEEEEEEeecCCCceeEEEEC-----CCCceEeeeeEeecCCCceEEEeccccc--c---
Confidence 99999999864321 1 12334444221 1112222222 233333333332 6789999999876 1
Q ss_pred CCCCCceeeeEEEEe--------CCCceeEEeecCCCCCCCcceeEEEEECCeEEE
Q 005655 264 QSEKGIIHSDLWSLD--------PRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALL 311 (685)
Q Consensus 264 ~~~~~~~~~dv~~yd--------~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyv 311 (685)
++....+ ...+| ...-.|+.- .-..|..++..+-+|.+++
T Consensus 233 --QKRm~C~-~V~Ldd~~I~ie~~E~P~Wt~d-----I~hSrtWFGgs~G~G~~Li 280 (337)
T PF03089_consen 233 --QKRMECN-TVSLDDDGIHIEEREPPEWTGD-----IKHSRTWFGGSMGKGSALI 280 (337)
T ss_pred --eeeeeee-EEEEeCCceEeccCCCCCCCCC-----cCcCccccccccCCceEEE
Confidence 1122222 22233 344456532 2346777777666666544
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-08 Score=75.91 Aligned_cols=48 Identities=42% Similarity=0.752 Sum_probs=41.3
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
||++|++++++++||||||+ .......+.+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~-~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGY-GTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCc-ccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 1222245799999999999999999876
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-08 Score=75.14 Aligned_cols=46 Identities=37% Similarity=0.673 Sum_probs=41.4
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
||++|++++++++||||||+... ..+++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN---NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST---SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc---CceeeeEEEEeCCCCEEEEcCCC
Confidence 69999999999999999999872 34799999999999999999887
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-08 Score=74.75 Aligned_cols=41 Identities=29% Similarity=0.559 Sum_probs=36.0
Q ss_pred CCCCCcceeeEEecCEEEEEcCeeeccCeeeeeecccccccCC
Q 005655 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (685)
Q Consensus 450 ~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D~y~ldL~k 492 (685)
+|.||.+|+++++++.||||||... .....+||||.|||..
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCC
Confidence 4999999999999999999999984 3446799999999975
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.68 E-value=8e-08 Score=103.35 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=75.4
Q ss_pred CCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEeccc
Q 005655 177 PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYS 255 (685)
Q Consensus 177 P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~ 255 (685)
+.++.+|+++++++++|||||.++.+ ...+.|++||+.+.+|...... |..|.||.||+++++ +++|+|+++.+
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~---~~~~~v~i~D~~t~~W~~P~V~--G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGN---TLSIGVQILDKITNNWVSPIVL--GTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCc---cccceEEEEECCCCcEeccccc--CCCCCCCCcceEEEECCceEEEEeCCC
Confidence 56899999999999999999987632 2579999999999999998877 778999999999999 89999999876
Q ss_pred CCCCcccCCCCCCceeeeEEEEeCCCc
Q 005655 256 KEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (685)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (685)
.. ..++|+|.+.|.
T Consensus 97 ~~-------------~~~~w~l~~~t~ 110 (398)
T PLN02772 97 AP-------------DDSIWFLEVDTP 110 (398)
T ss_pred CC-------------ccceEEEEcCCH
Confidence 43 377999987653
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-08 Score=75.62 Aligned_cols=45 Identities=42% Similarity=0.845 Sum_probs=30.5
Q ss_pred CcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEccc
Q 005655 124 PRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 124 ~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
||++|+++.+ ++.||||||..... ..++++|+||+.+++|+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~-----~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG-----SPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T-----EE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC-----cccCCEEEEECCCCEEEECCC
Confidence 6999999999 58999999998753 368999999999999999965
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.3e-08 Score=75.11 Aligned_cols=46 Identities=35% Similarity=0.646 Sum_probs=31.4
Q ss_pred CCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 179 ~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
||.+|+++.+ +++||||||..... .+++++|+||+.+++|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCCC
Confidence 6999999999 58999999997653 5799999999999999999665
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.5e-08 Score=73.55 Aligned_cols=45 Identities=36% Similarity=0.505 Sum_probs=40.0
Q ss_pred CcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEccc
Q 005655 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 124 ~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
||++|+++++++.|||+||.... ...++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~-----~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN-----NQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST-----SSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc-----CceeeeEEEEeCCCCEEEEcCC
Confidence 69999999999999999999873 2368999999999999999987
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-07 Score=101.35 Aligned_cols=87 Identities=21% Similarity=0.327 Sum_probs=73.9
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEE
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv 311 (685)
+.|+.+++++.+++++||+||.... +...+.+|+||+.+.+|......|.+|.+|.||++|++ +++|+|
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~----------~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv 91 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEG----------NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILV 91 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCC----------ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEE
Confidence 5688999999999999999997654 34678999999999999999999999999999999999 789999
Q ss_pred ecceecccCCccccccccCCcEEEEECCC
Q 005655 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
+++.... -.++|.+.+.|
T Consensus 92 ~~~~~~~-----------~~~~w~l~~~t 109 (398)
T PLN02772 92 IKKGSAP-----------DDSIWFLEVDT 109 (398)
T ss_pred EeCCCCC-----------ccceEEEEcCC
Confidence 9876542 24577666654
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=72.12 Aligned_cols=46 Identities=37% Similarity=0.697 Sum_probs=39.1
Q ss_pred CcceeEEEEECCEEEEEcCc-cCCCCCccccccCeEEEEECCCCcEEEccc
Q 005655 124 PRSAHQAVSWKNYLYIFGGE-FTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 124 ~R~~ha~v~~~~~iyvfGG~-~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
||++|++++++++||||||. .... ....+++++||+.+++|+.+++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~----~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNG----GSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCC----CcccceeEEEECCCCEEeecCC
Confidence 68999999999999999999 1111 2357999999999999999987
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-07 Score=69.79 Aligned_cols=42 Identities=48% Similarity=0.883 Sum_probs=36.3
Q ss_pred CCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 176 CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 176 ~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.|.+|++|++++++++||||||+.. ....+++++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCCC
Confidence 3889999999999999999999975 23457999999999764
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.3e-06 Score=84.45 Aligned_cols=129 Identities=21% Similarity=0.286 Sum_probs=84.1
Q ss_pred CCCCcceeEEEEE---C---CEEEEEcCccCCCCCccccccCeEEEEECCCCc--------EEEcccCC-CCCCCccceE
Q 005655 121 SPPPRSAHQAVSW---K---NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--------WEQLNLKG-CPSPRSGHRM 185 (685)
Q Consensus 121 ~P~~R~~ha~v~~---~---~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--------W~~~~~~g-~P~~Rsgh~~ 185 (685)
.|+.|+-..+..- + ...+|+||...+.. ..+.+|++...+.. +..-...| .|.+|+||++
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE-----lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~ 93 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE-----LSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTI 93 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc-----cccceEEEEeecCCCCceeEEEEecceecCCCCcccccceE
Confidence 4556654433331 1 35677899877643 45778888776543 22212222 4999999999
Q ss_pred EEE----CCEEEEEccccCCC---Ccee-------eeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEE
Q 005655 186 VLY----KHKIIVFGGFYDTL---REVR-------YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLY 251 (685)
Q Consensus 186 v~~----~~~lyv~GG~~~~~---~~~~-------~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~ 251 (685)
-++ +.-+++|||..... +.+. ....|+.+|++-..++.-..+ .+..+.+.|.+.+-++.+|++
T Consensus 94 ~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp---El~dG~SFHvslar~D~VYil 170 (337)
T PF03089_consen 94 NVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP---ELQDGQSFHVSLARNDCVYIL 170 (337)
T ss_pred EEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch---hhcCCeEEEEEEecCceEEEE
Confidence 877 45689999975311 1111 234678889988877765544 235677888888889999999
Q ss_pred ecccCC
Q 005655 252 GGYSKE 257 (685)
Q Consensus 252 GG~~~~ 257 (685)
||..-.
T Consensus 171 GGHsl~ 176 (337)
T PF03089_consen 171 GGHSLE 176 (337)
T ss_pred ccEEcc
Confidence 998754
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00011 Score=74.80 Aligned_cols=204 Identities=15% Similarity=0.221 Sum_probs=117.8
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcc-ee-EEEEEC-----CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEccc
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRS-AH-QAVSWK-----NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~-~h-a~v~~~-----~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
..++++||.|++|+.++.+..|.... .+ ....++ -+|+.+...... .....+.+|++.+++|+.+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~------~~~~~~~Vys~~~~~Wr~~~~ 87 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN------RNQSEHQVYTLGSNSWRTIEC 87 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC------CCCccEEEEEeCCCCcccccc
Confidence 36899999999999997653221111 11 111121 134444332111 022468899999999999874
Q ss_pred CCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEE-eccCCCCCCCCCccceeEEEeCCEEEEEe
Q 005655 174 KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (685)
Q Consensus 174 ~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~G 252 (685)
.. +........+.+++.||-+.-..... ....|..||+.+.+|.. ++.++. .........++.++++|.++.
T Consensus 88 ~~-~~~~~~~~~v~~~G~lyw~~~~~~~~----~~~~IvsFDl~~E~f~~~i~~P~~--~~~~~~~~~L~~~~G~L~~v~ 160 (230)
T TIGR01640 88 SP-PHHPLKSRGVCINGVLYYLAYTLKTN----PDYFIVSFDVSSERFKEFIPLPCG--NSDSVDYLSLINYKGKLAVLK 160 (230)
T ss_pred CC-CCccccCCeEEECCEEEEEEEECCCC----CcEEEEEEEcccceEeeeeecCcc--ccccccceEEEEECCEEEEEE
Confidence 22 22122233778899999987543211 11269999999999995 654311 011122345666688888876
Q ss_pred cccCCCCcccCCCCCCceeeeEEEEe-CCCceeEEeecCCCCCCCcce----eEEEEECCeEEEecceecccCCcccccc
Q 005655 253 GYSKEVSTDKNQSEKGIIHSDLWSLD-PRTWEWSKVKKIGMPPGPRAG----FSMCVHKKRALLFGGVVDMEMKGDVIMS 327 (685)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd-~~t~~W~~~~~~g~~P~~R~g----~s~~~~~~~iyvfGG~~~~~~~~~~~~~ 327 (685)
..... ..-++|+++ -....|+++-....++.++.. ...+..++.|+|..+...
T Consensus 161 ~~~~~------------~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---------- 218 (230)
T TIGR01640 161 QKKDT------------NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---------- 218 (230)
T ss_pred ecCCC------------CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC----------
Confidence 54321 114699996 445679987554332222221 344556888888665310
Q ss_pred ccCCcEEEEECCCC
Q 005655 328 LFLNELYGFQLDNH 341 (685)
Q Consensus 328 ~~~ndl~~yd~~t~ 341 (685)
..-+..||+.++
T Consensus 219 --~~~~~~y~~~~~ 230 (230)
T TIGR01640 219 --PFYIFYYNVGEN 230 (230)
T ss_pred --ceEEEEEeccCC
Confidence 113889998875
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-06 Score=64.78 Aligned_cols=47 Identities=32% Similarity=0.579 Sum_probs=40.1
Q ss_pred EEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECC
Q 005655 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH 190 (685)
Q Consensus 136 ~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~ 190 (685)
+|||+||.... ..++++++||+.+++|+.+++ ||.+|.+|+++++++
T Consensus 1 ~iyv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~--~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG------QRLKSVEVYDPETNKWTPLPS--MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC------ceeeeEEEECCCCCeEccCCC--CCCccccceEEEeCC
Confidence 48999998542 247899999999999999987 899999999988764
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-06 Score=63.71 Aligned_cols=47 Identities=34% Similarity=0.589 Sum_probs=39.8
Q ss_pred EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCC
Q 005655 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQD 246 (685)
Q Consensus 191 ~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~ 246 (685)
+|||+||+.. ...++++++||+.+++|+.++++ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~-----~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG----GQRLKSVEVYDPETNKWTPLPSM-----PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC----CceeeeEEEECCCCCeEccCCCC-----CCccccceEEEeCC
Confidence 4899999854 23588999999999999999877 89999999887753
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00029 Score=71.90 Aligned_cols=150 Identities=12% Similarity=0.110 Sum_probs=93.2
Q ss_pred EEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCC----CcEEEcccCCCCC
Q 005655 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT----NQWEQLNLKGCPS 178 (685)
Q Consensus 103 v~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t----~~W~~~~~~g~P~ 178 (685)
-..||+.+++++.+.... -.-|+..++.-+|.++++||.... .+.+-.|++.+ ..|...... |-.
T Consensus 48 s~~yD~~tn~~rpl~v~t--d~FCSgg~~L~dG~ll~tGG~~~G--------~~~ir~~~p~~~~~~~~w~e~~~~-m~~ 116 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQT--DTFCSGGAFLPDGRLLQTGGDNDG--------NKAIRIFTPCTSDGTCDWTESPND-MQS 116 (243)
T ss_pred EEEEecCCCcEEeccCCC--CCcccCcCCCCCCCEEEeCCCCcc--------ccceEEEecCCCCCCCCceECccc-ccC
Confidence 457999999999876532 122222222337899999998653 24566777765 579887654 789
Q ss_pred CCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCC--CceEEeccCC--CCCCCCCccceeEEEeCCEEEEEec
Q 005655 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--FKWQEIKPRF--GSMWPSPRSGFQFFVYQDEVFLYGG 253 (685)
Q Consensus 179 ~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t--~~W~~v~~~~--~~~~P~~Rs~~s~~~~~~~Iyv~GG 253 (685)
+|...+++.+ ++.++|+||... ...+.|.... .....+.... ....+...+=+..+.-++.||+++.
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~--------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNN--------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred CCccccceECCCCCEEEEeCcCC--------CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence 9999999888 789999999752 1223333211 1112221110 0112334444445555999999988
Q ss_pred ccCCCCcccCCCCCCceeeeEEEEeCCCcee-EEeec
Q 005655 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW-SKVKK 289 (685)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W-~~~~~ 289 (685)
.. .++||+.++++ ..++.
T Consensus 189 ~~------------------s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 189 RG------------------SIIYDYKTNTVVRTLPD 207 (243)
T ss_pred CC------------------cEEEeCCCCeEEeeCCC
Confidence 64 44889999977 44444
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00045 Score=70.50 Aligned_cols=152 Identities=15% Similarity=0.138 Sum_probs=95.1
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC----CceEEeccCCCC
Q 005655 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ----FKWQEIKPRFGS 230 (685)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t----~~W~~v~~~~~~ 230 (685)
...--.||+.|++++.+...- -.-.++|+ +.-++.+++.||..+. ...+-.|++.+ ..|......
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~t-d~FCSgg~-~L~dG~ll~tGG~~~G------~~~ir~~~p~~~~~~~~w~e~~~~--- 113 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQT-DTFCSGGA-FLPDGRLLQTGGDNDG------NKAIRIFTPCTSDGTCDWTESPND--- 113 (243)
T ss_pred eEEEEEEecCCCcEEeccCCC-CCcccCcC-CCCCCCEEEeCCCCcc------ccceEEEecCCCCCCCCceECccc---
Confidence 344568999999999887521 22333442 3348899999998663 34566677754 678877542
Q ss_pred CCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC------CceeEEeecCC-CCCCCcceeEE
Q 005655 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------TWEWSKVKKIG-MPPGPRAGFSM 302 (685)
Q Consensus 231 ~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------t~~W~~~~~~g-~~P~~R~g~s~ 302 (685)
+-.+|...++..+ ++.++|+||.... .+.|-|. ...|..+.... ..|..-+-+..
T Consensus 114 -m~~~RWYpT~~~L~DG~vlIvGG~~~~----------------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~ 176 (243)
T PF07250_consen 114 -MQSGRWYPTATTLPDGRVLIVGGSNNP----------------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVH 176 (243)
T ss_pred -ccCCCccccceECCCCCEEEEeCcCCC----------------cccccCCccCCCCceeeecchhhhccCccccCceEE
Confidence 3789999999888 9999999998632 1222222 12232222110 11222222333
Q ss_pred EEECCeEEEecceecccCCccccccccCCcEEEEECCCCcE-EEEEecC
Q 005655 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW-YPLELRK 350 (685)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W-~~l~~~~ 350 (685)
+.-+|+||+|+.. .-.+||..++.+ ..++..+
T Consensus 177 llPdG~lFi~an~----------------~s~i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 177 LLPDGNLFIFANR----------------GSIIYDYKTNTVVRTLPDLP 209 (243)
T ss_pred EcCCCCEEEEEcC----------------CcEEEeCCCCeEEeeCCCCC
Confidence 4448999999975 357889999977 5666533
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.018 Score=63.49 Aligned_cols=193 Identities=11% Similarity=0.058 Sum_probs=107.7
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCC-C-----CCCcceeEEEEECCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN-S-----PPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~-~-----P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~ 152 (685)
++.||+.+.. ..+++||..++ .|+.-.... . +.++...+.++.++.||+.+.
T Consensus 69 ~~~vy~~~~~----------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---------- 128 (394)
T PRK11138 69 YNKVYAADRA----------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---------- 128 (394)
T ss_pred CCEEEEECCC----------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----------
Confidence 7888887652 36899998876 487432210 0 012223345666888887442
Q ss_pred cccCeEEEEECCCC--cEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEeccCC
Q 005655 153 HHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRF 228 (685)
Q Consensus 153 ~~~~dv~~yD~~t~--~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~ 228 (685)
-..++.||..|+ .|+.-.. .+ ...+-++.++.||+..+ ...++.||+.+.+ |+.-...+
T Consensus 129 --~g~l~ald~~tG~~~W~~~~~----~~-~~ssP~v~~~~v~v~~~----------~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 129 --KGQVYALNAEDGEVAWQTKVA----GE-ALSRPVVSDGLVLVHTS----------NGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred --CCEEEEEECCCCCCcccccCC----Cc-eecCCEEECCEEEEECC----------CCEEEEEEccCCCEeeeecCCCC
Confidence 146899999887 4876432 11 12233556888887543 2468999998765 87654321
Q ss_pred CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecC--CCCCC---CcceeE
Q 005655 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKI--GMPPG---PRAGFS 301 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~--g~~P~---~R~g~s 301 (685)
. ...+...+.++.++.+|+..+ .+ .++.+|+.+. .|+..... +.... .....+
T Consensus 192 ~---~~~~~~~sP~v~~~~v~~~~~-~g----------------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 192 S---LTLRGESAPATAFGGAIVGGD-NG----------------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred c---ccccCCCCCEEECCEEEEEcC-CC----------------EEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 0 111222233445666666432 22 2667777654 57653211 00000 011234
Q ss_pred EEEECCeEEEecceecccCCccccccccCCcEEEEECCCC--cEEE
Q 005655 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (685)
Q Consensus 302 ~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (685)
.++.++.+|+.+.. ..++++|+.+. .|..
T Consensus 252 P~v~~~~vy~~~~~---------------g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 252 PVVVGGVVYALAYN---------------GNLVALDLRSGQIVWKR 282 (394)
T ss_pred cEEECCEEEEEEcC---------------CeEEEEECCCCCEEEee
Confidence 55678888875531 34999999876 5764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.029 Score=61.90 Aligned_cols=169 Identities=15% Similarity=0.125 Sum_probs=95.0
Q ss_pred cEEEEEcCCCc--EEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCCC
Q 005655 102 DLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP 177 (685)
Q Consensus 102 dv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P 177 (685)
.++.||+.+++ |+.-...+....+...+-++.++.+|+.++. ..++.+|+.++. |+.-.. .|
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~------------g~v~a~d~~~G~~~W~~~~~--~~ 236 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN------------GRVSAVLMEQGQLIWQQRIS--QP 236 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC------------CEEEEEEccCChhhheeccc--cC
Confidence 58888988775 7753321111112223334456666664331 357788888764 864321 11
Q ss_pred CC--------CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCE
Q 005655 178 SP--------RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDE 247 (685)
Q Consensus 178 ~~--------Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~ 247 (685)
.. ....+.++.++.||+.+. ...++++|+.+.+ |+.-.. .+ ..+++.++.
T Consensus 237 ~~~~~~~~~~~~~~sP~v~~~~vy~~~~----------~g~l~ald~~tG~~~W~~~~~-------~~---~~~~~~~~~ 296 (394)
T PRK11138 237 TGATEIDRLVDVDTTPVVVGGVVYALAY----------NGNLVALDLRSGQIVWKREYG-------SV---NDFAVDGGR 296 (394)
T ss_pred CCccchhcccccCCCcEEECCEEEEEEc----------CCeEEEEECCCCCEEEeecCC-------Cc---cCcEEECCE
Confidence 11 112334566888887643 2468999998764 875311 11 134566888
Q ss_pred EEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCcccc
Q 005655 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (685)
Q Consensus 248 Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~ 325 (685)
||+.... ..++++|+.+. .|..-.. ..+...+.++.+++||+....
T Consensus 297 vy~~~~~-----------------g~l~ald~~tG~~~W~~~~~-----~~~~~~sp~v~~g~l~v~~~~---------- 344 (394)
T PRK11138 297 IYLVDQN-----------------DRVYALDTRGGVELWSQSDL-----LHRLLTAPVLYNGYLVVGDSE---------- 344 (394)
T ss_pred EEEEcCC-----------------CeEEEEECCCCcEEEccccc-----CCCcccCCEEECCEEEEEeCC----------
Confidence 8886532 23888888765 5764321 123334456678888875321
Q ss_pred ccccCCcEEEEECCCC
Q 005655 326 MSLFLNELYGFQLDNH 341 (685)
Q Consensus 326 ~~~~~ndl~~yd~~t~ 341 (685)
..|+++|+.+.
T Consensus 345 -----G~l~~ld~~tG 355 (394)
T PRK11138 345 -----GYLHWINREDG 355 (394)
T ss_pred -----CEEEEEECCCC
Confidence 24888888765
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.13 Score=51.95 Aligned_cols=187 Identities=20% Similarity=0.255 Sum_probs=107.2
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc--EEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.||+..+ .+.|++||+.+++ |+.-.. .+.....+..++.|||..+. +.+
T Consensus 36 ~~~v~~~~~----------~~~l~~~d~~tG~~~W~~~~~-----~~~~~~~~~~~~~v~v~~~~------------~~l 88 (238)
T PF13360_consen 36 GGRVYVASG----------DGNLYALDAKTGKVLWRFDLP-----GPISGAPVVDGGRVYVGTSD------------GSL 88 (238)
T ss_dssp TTEEEEEET----------TSEEEEEETTTSEEEEEEECS-----SCGGSGEEEETTEEEEEETT------------SEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEeecc-----ccccceeeecccccccccce------------eee
Confidence 688888743 2479999998874 765431 11222246678899887631 369
Q ss_pred EEEECCCCc--EEE-cccCCCCC-CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEeccCCCCCC
Q 005655 159 WMLDLKTNQ--WEQ-LNLKGCPS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMW 232 (685)
Q Consensus 159 ~~yD~~t~~--W~~-~~~~g~P~-~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~ 232 (685)
+.||..++. |+. .... .+. .+.....++.++.+|+... ...++++|+.+.+ |......+....
T Consensus 89 ~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 89 YALDAKTGKVLWSIYLTSS-PPAGVRSSSSPAVDGDRLYVGTS----------SGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEETTTSCEEEEEEE-SS-CTCSTB--SEEEEETTEEEEEET----------CSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred EecccCCcceeeeeccccc-cccccccccCceEecCEEEEEec----------cCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 999988874 984 4331 122 2344455556777777653 2578999998764 776543311100
Q ss_pred CC---CccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce--eEEeecCCCCCCCcceeEEEEECC
Q 005655 233 PS---PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKK 307 (685)
Q Consensus 233 P~---~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~~~~~g~~P~~R~g~s~~~~~~ 307 (685)
+. .......+..++.||+..+... +..+|..+.. |+.. ..+ ....+...++
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~-----------------~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~ 213 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGR-----------------VVAVDLATGEKLWSKP-ISG------IYSLPSVDGG 213 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSS-----------------EEEEETTTTEEEEEEC-SS-------ECECEECCCT
T ss_pred ceeeecccccceEEECCEEEEEcCCCe-----------------EEEEECCCCCEEEEec-CCC------ccCCceeeCC
Confidence 00 1112333444677887765431 4566888876 7433 211 1112344467
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCCC--cEE
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWY 344 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~ 344 (685)
.+|+.. . .+.|++||+.|. .|.
T Consensus 214 ~l~~~~-~--------------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 214 TLYVTS-S--------------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEEE-T--------------TTEEEEEETTTTEEEEE
T ss_pred EEEEEe-C--------------CCEEEEEECCCCCEEeE
Confidence 777666 2 245999999987 454
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.21 Score=54.60 Aligned_cols=169 Identities=17% Similarity=0.119 Sum_probs=90.4
Q ss_pred cEEEEEcCCC--cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCC--cEEEcccCCCC
Q 005655 102 DLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGCP 177 (685)
Q Consensus 102 dv~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~--~W~~~~~~g~P 177 (685)
.+++||+.++ .|+.-........+...+.++.++.+| +|.. -..++.+|+.++ .|+.-.. .|
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~-~~~~-----------~g~v~ald~~tG~~~W~~~~~--~~ 221 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVL-VGFA-----------GGKLVALDLQTGQPLWEQRVA--LP 221 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEE-EECC-----------CCEEEEEEccCCCEeeeeccc--cC
Confidence 5889998876 477433221101122334455566554 3332 135888998876 4864322 12
Q ss_pred CCC--------ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCE
Q 005655 178 SPR--------SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDE 247 (685)
Q Consensus 178 ~~R--------sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~ 247 (685)
..+ .....++.++.||+.+. ...+++||+.+.+ |..-. + ...+.++.++.
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~----------~g~l~a~d~~tG~~~W~~~~-------~---~~~~p~~~~~~ 281 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSY----------QGRVAALDLRSGRVLWKRDA-------S---SYQGPAVDDNR 281 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEc----------CCEEEEEECCCCcEEEeecc-------C---CccCceEeCCE
Confidence 111 12233456778877543 2468999987653 75531 1 11234456888
Q ss_pred EEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCcccc
Q 005655 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (685)
Q Consensus 248 Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~ 325 (685)
||+... .+ .++++|+.+. .|..... ..+...+.++.+++||+.. .
T Consensus 282 vyv~~~-~G----------------~l~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~~~-~---------- 328 (377)
T TIGR03300 282 LYVTDA-DG----------------VVVALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVVGD-F---------- 328 (377)
T ss_pred EEEECC-CC----------------eEEEEECCCCcEEEccccc-----cCCccccCEEECCEEEEEe-C----------
Confidence 887642 11 3788887654 5765321 1122234455677777643 2
Q ss_pred ccccCCcEEEEECCCC
Q 005655 326 MSLFLNELYGFQLDNH 341 (685)
Q Consensus 326 ~~~~~ndl~~yd~~t~ 341 (685)
...|+++|+.+.
T Consensus 329 ----~G~l~~~d~~tG 340 (377)
T TIGR03300 329 ----EGYLHWLSREDG 340 (377)
T ss_pred ----CCEEEEEECCCC
Confidence 134888887654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.14 Score=55.98 Aligned_cols=188 Identities=14% Similarity=0.124 Sum_probs=101.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc--EEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.||+.+.. ..|++||+.+++ |+.-... +...+.++.++.+|+.+. -..+
T Consensus 65 ~~~v~v~~~~----------g~v~a~d~~tG~~~W~~~~~~-----~~~~~p~v~~~~v~v~~~------------~g~l 117 (377)
T TIGR03300 65 GGKVYAADAD----------GTVVALDAETGKRLWRVDLDE-----RLSGGVGADGGLVFVGTE------------KGEV 117 (377)
T ss_pred CCEEEEECCC----------CeEEEEEccCCcEeeeecCCC-----CcccceEEcCCEEEEEcC------------CCEE
Confidence 6777765541 369999988764 8743221 112233445677776442 1468
Q ss_pred EEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC--ceEEeccCCCCCCCC
Q 005655 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPS 234 (685)
Q Consensus 159 ~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~ 234 (685)
+.||+.++. |+.-.. .. .....++.++.+|+..+ ...+++||+.+. .|+.-...+. ..
T Consensus 118 ~ald~~tG~~~W~~~~~----~~-~~~~p~v~~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~~---~~ 179 (377)
T TIGR03300 118 IALDAEDGKELWRAKLS----SE-VLSPPLVANGLVVVRTN----------DGRLTALDAATGERLWTYSRVTPA---LT 179 (377)
T ss_pred EEEECCCCcEeeeeccC----ce-eecCCEEECCEEEEECC----------CCeEEEEEcCCCceeeEEccCCCc---ee
Confidence 999988764 875432 11 12333456777777543 245899998765 4775433210 11
Q ss_pred CccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCC--CCCCCc---ceeEEEEECC
Q 005655 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIG--MPPGPR---AGFSMCVHKK 307 (685)
Q Consensus 235 ~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g--~~P~~R---~g~s~~~~~~ 307 (685)
.+...+.++.++.+ ++|...+ .++.+|+.+. .|+.....+ .....| ...+.++.++
T Consensus 180 ~~~~~sp~~~~~~v-~~~~~~g----------------~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 180 LRGSASPVIADGGV-LVGFAGG----------------KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred ecCCCCCEEECCEE-EEECCCC----------------EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC
Confidence 12233444556644 4444332 3778887654 676532110 000011 1233455677
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCCC--cEEE
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (685)
.+|+.+. ...+++||+.+. .|..
T Consensus 243 ~vy~~~~---------------~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 243 QVYAVSY---------------QGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEEEc---------------CCEEEEEECCCCcEEEee
Confidence 7777542 134999998775 5654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.051 Score=55.18 Aligned_cols=164 Identities=14% Similarity=0.101 Sum_probs=92.4
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccc--eEEEE----CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGH--RMVLY----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh--~~v~~----~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
..+.++||.|++|..++....+...... ....+ +. +|+.+...... .....+.+|++.++.|..+...+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~----~~~~~~~Vys~~~~~Wr~~~~~~ 89 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN----RNQSEHQVYTLGSNSWRTIECSP 89 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC----CCCccEEEEEeCCCCccccccCC
Confidence 3588999999999999763221111111 11112 12 34444332111 12357899999999999988542
Q ss_pred CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEE-eecCCCCCCCcceeEEEEECC
Q 005655 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK-VKKIGMPPGPRAGFSMCVHKK 307 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~-~~~~g~~P~~R~g~s~~~~~~ 307 (685)
+........+.++|.||-+...... .....+..||+.+.+|.. +..+...........++.++|
T Consensus 90 ----~~~~~~~~~v~~~G~lyw~~~~~~~-----------~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G 154 (230)
T TIGR01640 90 ----PHHPLKSRGVCINGVLYYLAYTLKT-----------NPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKG 154 (230)
T ss_pred ----CCccccCCeEEECCEEEEEEEECCC-----------CCcEEEEEEEcccceEeeeeecCccccccccceEEEEECC
Confidence 1111122255679999988744321 111258899999999994 543111001122345667789
Q ss_pred eEEEecceecccCCccccccccCCcEEEEE-CCCCcEEEEEe
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQ-LDNHRWYPLEL 348 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd-~~t~~W~~l~~ 348 (685)
+|.++...... ..-+||+.+ -....|+++-.
T Consensus 155 ~L~~v~~~~~~----------~~~~IWvl~d~~~~~W~k~~~ 186 (230)
T TIGR01640 155 KLAVLKQKKDT----------NNFDLWVLNDAGKQEWSKLFT 186 (230)
T ss_pred EEEEEEecCCC----------CcEEEEEECCCCCCceeEEEE
Confidence 98887654220 013677776 44567987544
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.21 Score=50.29 Aligned_cols=175 Identities=22% Similarity=0.274 Sum_probs=101.6
Q ss_pred ccEEEEEcCCCc--EEEecCCCCCCCcceeE--EEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccC
Q 005655 101 GDLYRYDVEKQE--WKVISSPNSPPPRSAHQ--AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLK 174 (685)
Q Consensus 101 ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha--~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~ 174 (685)
+.|.+||+.+++ |+.-.. + +..+.. .+..++.+|+..+ ...+++||+.+++ |+.-..
T Consensus 3 g~l~~~d~~tG~~~W~~~~~---~-~~~~~~~~~~~~~~~v~~~~~------------~~~l~~~d~~tG~~~W~~~~~- 65 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG---P-GIGGPVATAVPDGGRVYVASG------------DGNLYALDAKTGKVLWRFDLP- 65 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS---S-SCSSEEETEEEETTEEEEEET------------TSEEEEEETTTSEEEEEEECS-
T ss_pred CEEEEEECCCCCEEEEEECC---C-CCCCccceEEEeCCEEEEEcC------------CCEEEEEECCCCCEEEEeecc-
Confidence 357889987764 875221 1 122222 3346899999843 2679999998885 776432
Q ss_pred CCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC--ceE-EeccCCCCCCCC-CccceeEEEeCCEEEE
Q 005655 175 GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQ-EIKPRFGSMWPS-PRSGFQFFVYQDEVFL 250 (685)
Q Consensus 175 g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~-~v~~~~~~~~P~-~Rs~~s~~~~~~~Iyv 250 (685)
.+.....++.++.||+..+ -+.+++||+.+. .|+ .....+ +. .+......+.++.+|+
T Consensus 66 ----~~~~~~~~~~~~~v~v~~~----------~~~l~~~d~~tG~~~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 127 (238)
T PF13360_consen 66 ----GPISGAPVVDGGRVYVGTS----------DGSLYALDAKTGKVLWSIYLTSSP----PAGVRSSSSPAVDGDRLYV 127 (238)
T ss_dssp ----SCGGSGEEEETTEEEEEET----------TSEEEEEETTTSCEEEEEEE-SSC----TCSTB--SEEEEETTEEEE
T ss_pred ----ccccceeeecccccccccc----------eeeeEecccCCcceeeeecccccc----ccccccccCceEecCEEEE
Confidence 2222224777888888763 237899997765 488 444321 12 2334444455777766
Q ss_pred EecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCCCC-------cceeEEEEECCeEEEecceecccCC
Q 005655 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGP-------RAGFSMCVHKKRALLFGGVVDMEMK 321 (685)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P~~-------R~g~s~~~~~~~iyvfGG~~~~~~~ 321 (685)
... .+ .++++|+.+. .|...... ++.. ......++.++.+|++.+..
T Consensus 128 ~~~-~g----------------~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g----- 183 (238)
T PF13360_consen 128 GTS-SG----------------KLVALDPKTGKLLWKYPVGE--PRGSSPISSFSDINGSPVISDGRVYVSSGDG----- 183 (238)
T ss_dssp EET-CS----------------EEEEEETTTTEEEEEEESST--T-SS--EEEETTEEEEEECCTTEEEEECCTS-----
T ss_pred Eec-cC----------------cEEEEecCCCcEEEEeecCC--CCCCcceeeecccccceEEECCEEEEEcCCC-----
Confidence 653 22 3889998765 57765422 1111 11233444467777776542
Q ss_pred ccccccccCCcEEEEECCCCc--EE
Q 005655 322 GDVIMSLFLNELYGFQLDNHR--WY 344 (685)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~--W~ 344 (685)
.++.+|+.+++ |.
T Consensus 184 ----------~~~~~d~~tg~~~w~ 198 (238)
T PF13360_consen 184 ----------RVVAVDLATGEKLWS 198 (238)
T ss_dssp ----------SEEEEETTTTEEEEE
T ss_pred ----------eEEEEECCCCCEEEE
Confidence 26777999986 73
|
... |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.043 Score=59.41 Aligned_cols=194 Identities=19% Similarity=0.200 Sum_probs=113.2
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEE-EE-CCE-EEE
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV-SW-KNY-LYI 139 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v-~~-~~~-iyv 139 (685)
...|+-+.--++-++| .-.|+|++|. ++. -.+|..|-.+|. .+.++. ..++--..+ .. +|. ..+
T Consensus 208 a~~ps~~~I~sv~FHp--~~plllvaG~--d~~-----lrifqvDGk~N~--~lqS~~--l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 208 AAHPSHGGITSVQFHP--TAPLLLVAGL--DGT-----LRIFQVDGKVNP--KLQSIH--LEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCcCcCCceEEEecC--CCceEEEecC--CCc-----EEEEEecCccCh--hheeee--eccCccceeeecCCCceEEE
Confidence 3456666666777887 5689999994 332 135555555554 555543 222222222 22 444 777
Q ss_pred EcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceE-EEECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRM-VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 140 fGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~-v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
++|. -.-++.||+.+..-+++.+......++-+.. |...+.++++-|.. .-|+++...|
T Consensus 275 ~s~r-----------rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---------G~I~lLhakT 334 (514)
T KOG2055|consen 275 TSGR-----------RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---------GHIHLLHAKT 334 (514)
T ss_pred eccc-----------ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---------ceEEeehhhh
Confidence 7774 2458899999999999887433223344433 33355566666653 3466667777
Q ss_pred CceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe-ecCCCCCCCc
Q 005655 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV-KKIGMPPGPR 297 (685)
Q Consensus 219 ~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~-~~~g~~P~~R 297 (685)
..|..---+ +-..+++++...+..||+.||++ . ||++|+..+.-..+ ...| .-
T Consensus 335 ~eli~s~Ki-----eG~v~~~~fsSdsk~l~~~~~~G-e----------------V~v~nl~~~~~~~rf~D~G----~v 388 (514)
T KOG2055|consen 335 KELITSFKI-----EGVVSDFTFSSDSKELLASGGTG-E----------------VYVWNLRQNSCLHRFVDDG----SV 388 (514)
T ss_pred hhhhheeee-----ccEEeeEEEecCCcEEEEEcCCc-e----------------EEEEecCCcceEEEEeecC----cc
Confidence 777543332 44455666666677888888875 3 89999887743332 1111 23
Q ss_pred ceeEEEE-ECCeEEEecce
Q 005655 298 AGFSMCV-HKKRALLFGGV 315 (685)
Q Consensus 298 ~g~s~~~-~~~~iyvfGG~ 315 (685)
.|.+.|. .++..+..|-.
T Consensus 389 ~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSD 407 (514)
T ss_pred ceeeeeecCCCceEEeccC
Confidence 4445553 46665555543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.98 Score=46.11 Aligned_cols=197 Identities=16% Similarity=0.086 Sum_probs=104.5
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.||+..- ..+.+++|++.+..-..+..+. ..++++. ++.|||... ..+
T Consensus 11 ~g~l~~~D~---------~~~~i~~~~~~~~~~~~~~~~~------~~G~~~~~~~g~l~v~~~-------------~~~ 62 (246)
T PF08450_consen 11 DGRLYWVDI---------PGGRIYRVDPDTGEVEVIDLPG------PNGMAFDRPDGRLYVADS-------------GGI 62 (246)
T ss_dssp TTEEEEEET---------TTTEEEEEETTTTEEEEEESSS------EEEEEEECTTSEEEEEET-------------TCE
T ss_pred CCEEEEEEc---------CCCEEEEEECCCCeEEEEecCC------CceEEEEccCCEEEEEEc-------------Cce
Confidence 467777643 1247999999998877655432 3444444 688888764 235
Q ss_pred EEEECCCCcEEEcccC--CC-CCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCC
Q 005655 159 WMLDLKTNQWEQLNLK--GC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (685)
Q Consensus 159 ~~yD~~t~~W~~~~~~--g~-P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (685)
.++|+.++.++.+... +. +..+.+-.++--++.||+-.-...... ......+|++++. .+...+... .
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~-~~~~g~v~~~~~~-~~~~~~~~~------~- 133 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS-GIDPGSVYRIDPD-GKVTVVADG------L- 133 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT-CGGSEEEEEEETT-SEEEEEEEE------E-
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc-cccccceEEECCC-CeEEEEecC------c-
Confidence 6779999999887763 11 333444444444778777422211110 0001679999998 655554322 1
Q ss_pred ccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC--CceeEEeecCCCCCCC-cceeEEEEE-CCeE
Q 005655 236 RSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR--TWEWSKVKKIGMPPGP-RAGFSMCVH-KKRA 309 (685)
Q Consensus 236 Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~--t~~W~~~~~~g~~P~~-R~g~s~~~~-~~~i 309 (685)
..-..++.. +..||+.--.. ..+|+|++. +..+.........+.. ..--++++- .++|
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFN----------------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTT----------------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred ccccceEECCcchheeeccccc----------------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 111233333 45677743322 238888875 3334332211111111 123345554 6888
Q ss_pred EEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
||..-. .+.|++||+....-.
T Consensus 198 ~va~~~--------------~~~I~~~~p~G~~~~ 218 (246)
T PF08450_consen 198 WVADWG--------------GGRIVVFDPDGKLLR 218 (246)
T ss_dssp EEEEET--------------TTEEEEEETTSCEEE
T ss_pred EEEEcC--------------CCEEEEECCCccEEE
Confidence 886321 245889988744333
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.095 Score=56.76 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=77.1
Q ss_pred ECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCcee---eec
Q 005655 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR---YYN 209 (685)
Q Consensus 133 ~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~---~~~ 209 (685)
.+++|+..+.. ..+.+||+.|..-...+. ++.+.....++.+++.||++........... ..-
T Consensus 75 ~gskIv~~d~~------------~~t~vyDt~t~av~~~P~--l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 75 HGSKIVAVDQS------------GRTLVYDTDTRAVATGPR--LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred cCCeEEEEcCC------------CCeEEEECCCCeEeccCC--CCCCCcceEEEEeCCeEEEeeccCccccccCccceeE
Confidence 38888888664 337799999998886665 5555556677778999999988643321100 011
Q ss_pred eEEEEE--------cCCCceEEeccCCCCCCCCC----ccceeEEEeCCEEEE-EecccCCCCcccCCCCCCceeeeEEE
Q 005655 210 DLYVFD--------LDQFKWQEIKPRFGSMWPSP----RSGFQFFVYQDEVFL-YGGYSKEVSTDKNQSEKGIIHSDLWS 276 (685)
Q Consensus 210 dv~~yD--------~~t~~W~~v~~~~~~~~P~~----Rs~~s~~~~~~~Iyv-~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (685)
.+..|+ .....|..++++|....... ..+++++ -+..|+| .-|.. .-+|.
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~----------------~GTys 203 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR----------------WGTYS 203 (342)
T ss_pred EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCc----------------eEEEE
Confidence 223333 23457888877632211111 2233333 3667777 33221 12899
Q ss_pred EeCCCceeEEeecC
Q 005655 277 LDPRTWEWSKVKKI 290 (685)
Q Consensus 277 yd~~t~~W~~~~~~ 290 (685)
||+.+.+|+++..-
T Consensus 204 fDt~~~~W~~~GdW 217 (342)
T PF07893_consen 204 FDTESHEWRKHGDW 217 (342)
T ss_pred EEcCCcceeeccce
Confidence 99999999999653
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.16 Score=53.18 Aligned_cols=179 Identities=17% Similarity=0.292 Sum_probs=102.8
Q ss_pred EEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 139 vfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
++||.|..... -....+..||+.+.+|..+... ..+ .-+.+... ++.||+.|-+...+. ....+-.||..
T Consensus 2 ~VGG~F~~aGs---L~C~~lC~yd~~~~qW~~~g~~--i~G-~V~~l~~~~~~~Llv~G~ft~~~~---~~~~la~yd~~ 72 (281)
T PF12768_consen 2 YVGGSFTSAGS---LPCPGLCLYDTDNSQWSSPGNG--ISG-TVTDLQWASNNQLLVGGNFTLNGT---NSSNLATYDFK 72 (281)
T ss_pred EEeeecCCCCC---cCCCEEEEEECCCCEeecCCCC--ceE-EEEEEEEecCCEEEEEEeeEECCC---CceeEEEEecC
Confidence 56777765432 1357899999999999988762 112 12334434 778888887765431 24568899999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC-
Q 005655 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG- 295 (685)
Q Consensus 218 t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~- 295 (685)
+.+|+.+.......+|.|.....+... ...+++.|..... ..-+..| ...+|..+......+.
T Consensus 73 ~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g-------------~~~l~~~--dGs~W~~i~~~~~~~~t 137 (281)
T PF12768_consen 73 NQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG-------------STFLMKY--DGSSWSSIGSDILGSGT 137 (281)
T ss_pred CCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC-------------CceEEEE--cCCceEeccccccCCCC
Confidence 999999887432345666544444433 4567777765221 1224555 4667888866222221
Q ss_pred CcceeEEEE------------ECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecC
Q 005655 296 PRAGFSMCV------------HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (685)
Q Consensus 296 ~R~g~s~~~------------~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (685)
.-.+..++- .+++++++-|.-.....+ .-..-.|| -..|.++-...
T Consensus 138 ~I~~l~~~~l~~~~~~~~~~~~~~~~Llv~G~l~~~~~G-------~~saalyd--G~~w~Py~~t~ 195 (281)
T PF12768_consen 138 TIRGLQVLPLNSSSHDNSSLFDSDQVLLVTGSLNLPDFG-------NASAALYD--GTSWTPYLLTS 195 (281)
T ss_pred EEEEEEEEeccccccccccccCCCcEEEEEeeEecCCCC-------cEEEEEEC--CCEEEEEEEEe
Confidence 111111211 245666666654321111 22356676 45899987743
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.1 Score=56.66 Aligned_cols=128 Identities=18% Similarity=0.207 Sum_probs=76.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEE-EEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQA-VSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~-v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
-+|.||..+.+-.++..+..-..++-+.. |...+.++++-|.+ ..+.++...|+.|-.--- ++...
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----------G~I~lLhakT~eli~s~K--ieG~v 347 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----------GHIHLLHAKTKELITSFK--IEGVV 347 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-----------ceEEeehhhhhhhhheee--eccEE
Confidence 47999999998888877653333443333 23345566666643 347788888888853211 23344
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
+..+....+..||+.||. ..||+||+.++.....-.- --..+|-++|.. ++.++..|--++.
T Consensus 348 ~~~~fsSdsk~l~~~~~~----------GeV~v~nl~~~~~~~rf~D-----~G~v~gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGT----------GEVYVWNLRQNSCLHRFVD-----DGSVHGTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred eeEEEecCCcEEEEEcCC----------ceEEEEecCCcceEEEEee-----cCccceeeeeecCCCceEEeccCcce
Confidence 444444446789999884 4799999998754333222 123355555554 5555555544443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.68 E-value=5.3 Score=45.99 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=64.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCC-CCC-----cceeEEEEECCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS-PPP-----RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~-P~~-----R~~ha~v~~~~~iyvfGG~~~s~~~~~~ 152 (685)
++.||+... .+.|+++|..+. .|+.-..... -.+ ......++.++.||+...
T Consensus 69 ~g~vyv~s~----------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---------- 128 (527)
T TIGR03075 69 DGVMYVTTS----------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---------- 128 (527)
T ss_pred CCEEEEECC----------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC----------
Confidence 677887544 236899999876 5875432110 000 112233455777776432
Q ss_pred cccCeEEEEECCCCc--EEEcccCCCC-CCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEecc
Q 005655 153 HHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~g~P-~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~ 226 (685)
-..++.||..|++ |..-... .. ......+-++.++.||+-..... ......|+.||..+.+ |+.-..
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~~~-~~~~~~~tssP~v~~g~Vivg~~~~~----~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKNGD-YKAGYTITAAPLVVKGKVITGISGGE----FGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred --CCEEEEEECCCCCEEeeccccc-ccccccccCCcEEECCEEEEeecccc----cCCCcEEEEEECCCCceeEeccCc
Confidence 1468999998875 8753321 11 11122334566887777432111 1123578899988754 764443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.98 Score=44.68 Aligned_cols=153 Identities=17% Similarity=0.259 Sum_probs=78.0
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCCC-CCCccceEEEEC--CEEEEEccccCCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYK--HKIIVFGGFYDTLR 203 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P-~~Rsgh~~v~~~--~~lyv~GG~~~~~~ 203 (685)
+++...+.+|+|-| +.+|+|+..... -..|... .| .+..-.++..+. +.+|+|-|
T Consensus 11 A~~~~~g~~y~FkG-------------~~~w~~~~~~~~~~p~~I~~~-w~~~p~~IDAa~~~~~~~~~yfFkg------ 70 (194)
T cd00094 11 AVTTLRGELYFFKG-------------RYFWRLSPGKPPGSPFLISSF-WPSLPSPVDAAFERPDTGKIYFFKG------ 70 (194)
T ss_pred eEEEeCCEEEEEeC-------------CEEEEEeCCCCCCCCeEhhhh-CCCCCCCccEEEEECCCCEEEEECC------
Confidence 34445699999987 357888865221 1222221 12 122233344443 79999977
Q ss_pred ceeeeceEEEEEcCCCceEEeccCCCCCCCC--CccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC
Q 005655 204 EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS--PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (685)
Q Consensus 204 ~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~--~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (685)
+.+|+|+..+..+.-......-.+|. .....++... ++++|+|-|.. .|+||..
T Consensus 71 -----~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~------------------y~ry~~~ 127 (194)
T cd00094 71 -----DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDK------------------YWRYDEK 127 (194)
T ss_pred -----CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCE------------------EEEEeCC
Confidence 35788876542221111110001111 1122222222 68999998742 7788765
Q ss_pred CceeEEe-----ec--CCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 281 TWEWSKV-----KK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 281 t~~W~~~-----~~--~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
..+...- .. .| .|. ..-.+....++++|+|-|.. +|.||..+.+
T Consensus 128 ~~~v~~~yP~~i~~~w~g-~p~-~idaa~~~~~~~~yfF~g~~----------------y~~~d~~~~~ 178 (194)
T cd00094 128 TQKMDPGYPKLIETDFPG-VPD-KVDAAFRWLDGYYYFFKGDQ----------------YWRFDPRSKE 178 (194)
T ss_pred CccccCCCCcchhhcCCC-cCC-CcceeEEeCCCcEEEEECCE----------------EEEEeCccce
Confidence 5443210 00 11 121 12222223348999998753 8999988766
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.35 Score=52.45 Aligned_cols=127 Identities=16% Similarity=0.187 Sum_probs=74.9
Q ss_pred EEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCC
Q 005655 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (685)
Q Consensus 186 v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (685)
++.+++|+..++. ..+.+||+.+..-...+.+ +.+.....++.+++.||++...... ......
T Consensus 73 al~gskIv~~d~~----------~~t~vyDt~t~av~~~P~l-----~~pk~~pisv~VG~~LY~m~~~~~~--~~~~~~ 135 (342)
T PF07893_consen 73 ALHGSKIVAVDQS----------GRTLVYDTDTRAVATGPRL-----HSPKRCPISVSVGDKLYAMDRSPFP--EPAGRP 135 (342)
T ss_pred EecCCeEEEEcCC----------CCeEEEECCCCeEeccCCC-----CCCCcceEEEEeCCeEEEeeccCcc--ccccCc
Confidence 3358899988663 3378999999876644443 4555555666778889999887543 000000
Q ss_pred CCCceeeeEEEEe--------CCCceeEEeecCCCCCCCcc-------eeEEEEE-CCeEEE-ecceecccCCccccccc
Q 005655 266 EKGIIHSDLWSLD--------PRTWEWSKVKKIGMPPGPRA-------GFSMCVH-KKRALL-FGGVVDMEMKGDVIMSL 328 (685)
Q Consensus 266 ~~~~~~~dv~~yd--------~~t~~W~~~~~~g~~P~~R~-------g~s~~~~-~~~iyv-fGG~~~~~~~~~~~~~~ 328 (685)
. ...-.+..|+ ...+.|..++++ |..+. -.+-+++ +..|+| .-|..
T Consensus 136 ~--~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P---Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------------ 198 (342)
T PF07893_consen 136 D--FPCFEALVYRPPPDDPSPEESWSWRSLPPP---PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------------ 198 (342)
T ss_pred c--ceeEEEeccccccccccCCCcceEEcCCCC---CccccCCcccceEEEEEEecCCeEEEEecCCc------------
Confidence 0 0011233333 345677776553 33222 3344555 556776 44321
Q ss_pred cCCcEEEEECCCCcEEEEEe
Q 005655 329 FLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 329 ~~ndl~~yd~~t~~W~~l~~ 348 (685)
.-.|+||+.+..|..+..
T Consensus 199 --~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 199 --WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred --eEEEEEEcCCcceeeccc
Confidence 128999999999998754
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.1 Score=44.23 Aligned_cols=149 Identities=21% Similarity=0.339 Sum_probs=76.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc--EEEecCCCCCCCcceeEEEEEC--CEEEEEcCccCCCCCccccccC
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYK 156 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~--~~iyvfGG~~~s~~~~~~~~~~ 156 (685)
.+++|+|-|. .+|+|+..... -+.+...-+..|..-.++.... +.+|+|-| +
T Consensus 16 ~g~~y~FkG~-----------~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg-------------~ 71 (194)
T cd00094 16 RGELYFFKGR-----------YFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG-------------D 71 (194)
T ss_pred CCEEEEEeCC-----------EEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC-------------C
Confidence 4889999873 46777654211 1122221111222233444443 89999977 4
Q ss_pred eEEEEECCCCcEE---EcccCCCCC-CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC-
Q 005655 157 DFWMLDLKTNQWE---QLNLKGCPS-PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG- 229 (685)
Q Consensus 157 dv~~yD~~t~~W~---~~~~~g~P~-~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~- 229 (685)
.+|+|+..+..+. .+...+.|. +..-.++..+ ++++|+|.| +..|+||..+++...--+.+.
T Consensus 72 ~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-----------~~y~ry~~~~~~v~~~yP~~i~ 140 (194)
T cd00094 72 KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-----------DKYWRYDEKTQKMDPGYPKLIE 140 (194)
T ss_pred EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-----------CEEEEEeCCCccccCCCCcchh
Confidence 6889987652221 111112222 1212233444 579999988 457888876554321101000
Q ss_pred ---CCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 230 ---SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 230 ---~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
..+|.. ...++...++.+|+|-|. .+|+||..+.+
T Consensus 141 ~~w~g~p~~-idaa~~~~~~~~yfF~g~------------------~y~~~d~~~~~ 178 (194)
T cd00094 141 TDFPGVPDK-VDAAFRWLDGYYYFFKGD------------------QYWRFDPRSKE 178 (194)
T ss_pred hcCCCcCCC-cceeEEeCCCcEEEEECC------------------EEEEEeCccce
Confidence 011222 222222224889999774 38899987665
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=3.5 Score=46.06 Aligned_cols=194 Identities=13% Similarity=0.000 Sum_probs=96.1
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
..+|++|+.++..+.++... ..-...+...-+..|++...... ..++|++|+.++....+.. .+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~Lt~--~~~~- 291 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP--GMTFAPRFSPDGRKVVMSLSQGG---------NTDIYTMDLRSGTTTRLTD--SPAI- 291 (435)
T ss_pred CEEEEEECCCCcEEEeecCC--CcccCcEECCCCCEEEEEEecCC---------CceEEEEECCCCceEEccC--CCCc-
Confidence 47999999999888776432 11111111111334544432211 2579999999988877754 2211
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCc
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~ 260 (685)
..+....-++.-++|..... + ...+|++|+.+.....+... ............+..|++.. ....
T Consensus 292 ~~~~~~spDG~~i~f~s~~~-g-----~~~Iy~~d~~g~~~~~lt~~-----~~~~~~~~~SpdG~~ia~~~-~~~~--- 356 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDRS-G-----SPQLYVMNADGSNPRRISFG-----GGRYSTPVWSPRGDLIAFTK-QGGG--- 356 (435)
T ss_pred cCceeEcCCCCEEEEEECCC-C-----CCeEEEEECCCCCeEEeecC-----CCcccCeEECCCCCEEEEEE-cCCC---
Confidence 11111122444333433111 1 24789999988877777643 11111122222244554443 2111
Q ss_pred ccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECC
Q 005655 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
...++.+|+.+.....+... ... .+..+. +++.++|-...... .....||.+|+.
T Consensus 357 ----------~~~i~~~d~~~~~~~~lt~~-----~~~-~~p~~spDG~~i~~~~~~~~~--------~~~~~L~~~dl~ 412 (435)
T PRK05137 357 ----------QFSIGVMKPDGSGERILTSG-----FLV-EGPTWAPNGRVIMFFRQTPGS--------GGAPKLYTVDLT 412 (435)
T ss_pred ----------ceEEEEEECCCCceEeccCC-----CCC-CCCeECCCCCEEEEEEccCCC--------CCcceEEEEECC
Confidence 13588888876655544321 111 112222 56655554432110 001469999998
Q ss_pred CCcEEEEE
Q 005655 340 NHRWYPLE 347 (685)
Q Consensus 340 t~~W~~l~ 347 (685)
...-..+.
T Consensus 413 g~~~~~l~ 420 (435)
T PRK05137 413 GRNEREVP 420 (435)
T ss_pred CCceEEcc
Confidence 76555544
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.42 Score=50.17 Aligned_cols=125 Identities=18% Similarity=0.262 Sum_probs=74.7
Q ss_pred EEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEEC
Q 005655 85 ILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDL 163 (685)
Q Consensus 85 ~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~ 163 (685)
+++||.+.. ........|+.||+.+.+|..+... ..-.-+++..+ ++.|||.|-...... ....+-.||.
T Consensus 1 v~VGG~F~~-aGsL~C~~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~-----~~~~la~yd~ 71 (281)
T PF12768_consen 1 VYVGGSFTS-AGSLPCPGLCLYDTDNSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNGT-----NSSNLATYDF 71 (281)
T ss_pred CEEeeecCC-CCCcCCCEEEEEECCCCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECCC-----CceeEEEEec
Confidence 367886432 2233467899999999999987653 12222344444 567777664433321 1356889999
Q ss_pred CCCcEEEcccC---CCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 164 KTNQWEQLNLK---GCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 164 ~t~~W~~~~~~---g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
.+++|+.+... ..|.+..-...... ...+|+.|.. ..+ ..-+..| .-.+|+.+..
T Consensus 72 ~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g-----~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 72 KNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG-----STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CCCeeeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC-----CceEEEE--cCCceEeccc
Confidence 99999988762 23444322222222 3468887776 221 2345556 5668999877
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=3.3 Score=46.58 Aligned_cols=145 Identities=9% Similarity=0.010 Sum_probs=79.9
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
..+|++|+.+++-+.++... . ...+.+.. +..|++...... ..++|++|+.++..+.+... ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~--g--~~~~~~wSPDG~~La~~~~~~g---------~~~Iy~~dl~tg~~~~lt~~--~~ 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP--G--INGAPRFSPDGKKLALVLSKDG---------QPEIYVVDIATKALTRITRH--RA 306 (448)
T ss_pred cEEEEEECCCCCeEEecCCC--C--CcCCeeECCCCCEEEEEEeCCC---------CeEEEEEECCCCCeEECccC--CC
Confidence 46999999988877775431 1 11122222 345655432211 25799999999998887652 11
Q ss_pred CCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEeccc
Q 005655 179 PRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYS 255 (685)
Q Consensus 179 ~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~ 255 (685)
......| ++ +|++.....+ ...+|++|+.+.++..+.... ... ...+....+..||+.+ ..
T Consensus 307 ---~~~~p~wSpDG~~I~f~s~~~g-------~~~Iy~~dl~~g~~~~Lt~~g----~~~-~~~~~SpDG~~l~~~~-~~ 370 (448)
T PRK04792 307 ---IDTEPSWHPDGKSLIFTSERGG-------KPQIYRVNLASGKVSRLTFEG----EQN-LGGSITPDGRSMIMVN-RT 370 (448)
T ss_pred ---CccceEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEEecCC----CCC-cCeeECCCCCEEEEEE-ec
Confidence 1111222 34 4444332111 257999999999998886431 111 1122222344555543 22
Q ss_pred CCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
.. ...+|.+|+.+.....+..
T Consensus 371 ~g-------------~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 371 NG-------------KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred CC-------------ceEEEEEECCCCCeEEccC
Confidence 11 1358999998888776653
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=2 Score=48.43 Aligned_cols=145 Identities=10% Similarity=0.112 Sum_probs=79.9
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..+|++|+.++.-..+.. .+..-. ...| +..|++.....+ ..+||++|+.+.....+....
T Consensus 242 ~~L~~~dl~tg~~~~lt~--~~g~~~---~~~wSPDG~~La~~~~~~g-------~~~Iy~~dl~tg~~~~lt~~~---- 305 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS--FPGING---APRFSPDGKKLALVLSKDG-------QPEIYVVDIATKALTRITRHR---- 305 (448)
T ss_pred cEEEEEECCCCCeEEecC--CCCCcC---CeeECCCCCEEEEEEeCCC-------CeEEEEEECCCCCeEECccCC----
Confidence 579999999888776654 221111 1223 345655433221 257999999999888776531
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEE
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv 311 (685)
..-...+....+..|++.....+ ...+|.+|+.+..+.++...+.. ..+.++. +++.++
T Consensus 306 -~~~~~p~wSpDG~~I~f~s~~~g--------------~~~Iy~~dl~~g~~~~Lt~~g~~-----~~~~~~SpDG~~l~ 365 (448)
T PRK04792 306 -AIDTEPSWHPDGKSLIFTSERGG--------------KPQIYRVNLASGKVSRLTFEGEQ-----NLGGSITPDGRSMI 365 (448)
T ss_pred -CCccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEEecCCCC-----CcCeeECCCCCEEE
Confidence 11112222222445555432221 13699999999888887532211 1112222 455454
Q ss_pred ecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
|.+... -...||.+|+.+.....+.
T Consensus 366 ~~~~~~-----------g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 366 MVNRTN-----------GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred EEEecC-----------CceEEEEEECCCCCeEEcc
Confidence 543321 0246999999988776554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.5 Score=47.25 Aligned_cols=185 Identities=10% Similarity=-0.002 Sum_probs=94.6
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
..+|++|+.+++-..++... .. .......-+ ..|++...... ..++|++|+.++....+... +..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~--g~-~~~~~~SpDG~~l~~~~s~~g---------~~~Iy~~d~~~g~~~~lt~~--~~~ 293 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFR--GI-NGAPSFSPDGRRLALTLSRDG---------NPEIYVMDLGSRQLTRLTNH--FGI 293 (433)
T ss_pred cEEEEEECCCCCEEEeccCC--CC-ccCceECCCCCEEEEEEeCCC---------CceEEEEECCCCCeEECccC--CCC
Confidence 46899999988887776432 11 111111113 44544332211 14799999999887776541 111
Q ss_pred CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCC
Q 005655 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (685)
Q Consensus 180 Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~ 259 (685)
-... ...-++..++|..... + ...+|.+|+.+..+..+... .......+....+..|++..+....
T Consensus 294 ~~~~-~~spDG~~l~f~sd~~-g-----~~~iy~~dl~~g~~~~lt~~-----g~~~~~~~~SpDG~~Ia~~~~~~~~-- 359 (433)
T PRK04922 294 DTEP-TWAPDGKSIYFTSDRG-G-----RPQIYRVAASGGSAERLTFQ-----GNYNARASVSPDGKKIAMVHGSGGQ-- 359 (433)
T ss_pred ccce-EECCCCCEEEEEECCC-C-----CceEEEEECCCCCeEEeecC-----CCCccCEEECCCCCEEEEEECCCCc--
Confidence 1111 1112444333332111 1 24799999988888887643 1111122222335556655442211
Q ss_pred cccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECC
Q 005655 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
..++++|+.+..+..+...+ ........-+++.++|..... -...||.+++.
T Consensus 360 ------------~~I~v~d~~~g~~~~Lt~~~-----~~~~p~~spdG~~i~~~s~~~-----------g~~~L~~~~~~ 411 (433)
T PRK04922 360 ------------YRIAVMDLSTGSVRTLTPGS-----LDESPSFAPNGSMVLYATREG-----------GRGVLAAVSTD 411 (433)
T ss_pred ------------eeEEEEECCCCCeEECCCCC-----CCCCceECCCCCEEEEEEecC-----------CceEEEEEECC
Confidence 25889999888877665321 111111222666666654421 12458888886
Q ss_pred CC
Q 005655 340 NH 341 (685)
Q Consensus 340 t~ 341 (685)
..
T Consensus 412 g~ 413 (433)
T PRK04922 412 GR 413 (433)
T ss_pred CC
Confidence 43
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=95.15 E-value=3.5 Score=42.31 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=53.9
Q ss_pred EEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEE
Q 005655 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 83 ~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
.+|+.++. -+.+++||+.+++-...-... ..++ +++.. +..+|+.++. .+.+++
T Consensus 2 ~~~~s~~~---------d~~v~~~d~~t~~~~~~~~~~-~~~~---~l~~~~dg~~l~~~~~~-----------~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEK---------DNTISVIDTATLEVTRTFPVG-QRPR---GITLSKDGKLLYVCASD-----------SDTIQV 57 (300)
T ss_pred cEEEEecC---------CCEEEEEECCCCceEEEEECC-CCCC---ceEECCCCCEEEEEECC-----------CCeEEE
Confidence 46666662 137888998877643322211 1122 23332 3457777653 246889
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
||+.+......-.. .+.+ +.+++. ++.+|+.++. ...+.+||+.+..
T Consensus 58 ~d~~~~~~~~~~~~-~~~~---~~~~~~~~g~~l~~~~~~---------~~~l~~~d~~~~~ 106 (300)
T TIGR03866 58 IDLATGEVIGTLPS-GPDP---ELFALHPNGKILYIANED---------DNLVTVIDIETRK 106 (300)
T ss_pred EECCCCcEEEeccC-CCCc---cEEEECCCCCEEEEEcCC---------CCeEEEEECCCCe
Confidence 99988876542221 1111 222222 3456665542 2468889988754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=95.13 E-value=3.6 Score=45.32 Aligned_cols=146 Identities=11% Similarity=0.007 Sum_probs=78.3
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
..+|+||+.++....+.... ... .+.+.. + ..|++...... ..++|.+|+.++....+... +.
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~--~~~--~~~~~spDg~~l~~~~~~~~---------~~~i~~~d~~~~~~~~l~~~--~~ 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP--GMN--GAPAFSPDGSKLAVSLSKDG---------NPDIYVMDLDGKQLTRLTNG--PG 278 (417)
T ss_pred cEEEEEECCCCCEEEeecCC--CCc--cceEECCCCCEEEEEECCCC---------CccEEEEECCCCCEEECCCC--CC
Confidence 46899999988776665421 111 122222 3 45655433211 25799999999888777542 11
Q ss_pred CCccceEEEECC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccC
Q 005655 179 PRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (685)
Q Consensus 179 ~Rsgh~~v~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~ 256 (685)
.... ....-++ +|++.....+ ...||.+|+.+..+..+.... ......... ++..+++.....
T Consensus 279 ~~~~-~~~s~dg~~l~~~s~~~g-------~~~iy~~d~~~~~~~~l~~~~-------~~~~~~~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 279 IDTE-PSWSPDGKSIAFTSDRGG-------SPQIYMMDADGGEVRRLTFRG-------GYNASPSWSPDGDLIAFVHREG 343 (417)
T ss_pred CCCC-EEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEeecCC-------CCccCeEECCCCCEEEEEEccC
Confidence 1111 1111244 4444332211 247999999988887776431 111222222 455555554332
Q ss_pred CCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
. ...++.+|+.+..+..+..
T Consensus 344 ~-------------~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 344 G-------------GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred C-------------ceEEEEEeCCCCCeEEccC
Confidence 1 2358899998876666543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=4.4 Score=45.12 Aligned_cols=182 Identities=5% Similarity=-0.009 Sum_probs=93.7
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
..+|++|+.+++-+.++... ....+.... + ..|++...... ..++|++|+.++.+..+... +.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~----g~~~~~~~SpDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~~ 287 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE----GLNGAPAWSPDGSKLAFVLSKDG---------NPEIYVMDLASRQLSRVTNH--PA 287 (430)
T ss_pred CEEEEEECCCCCEEEccCCC----CCcCCeEECCCCCEEEEEEccCC---------CceEEEEECCCCCeEEcccC--CC
Confidence 46999999998887775432 111122222 3 34543321111 25799999999998887541 11
Q ss_pred CCccceEEEECC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC
Q 005655 179 PRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 179 ~Rsgh~~v~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
........-++ .||+.....+ ...+|.+|+.+..+..+.... ...........+..|++.....+
T Consensus 288 -~~~~~~~spDg~~i~f~s~~~g-------~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~- 353 (430)
T PRK00178 288 -IDTEPFWGKDGRTLYFTSDRGG-------KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG- 353 (430)
T ss_pred -CcCCeEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccCC-
Confidence 11111111234 4544322111 247999999998888876431 00111112222455555432211
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEE
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (685)
...++.+|+.+..++.+...+. ...-...-+++.++|...... ...|+.++
T Consensus 354 -------------~~~l~~~dl~tg~~~~lt~~~~-----~~~p~~spdg~~i~~~~~~~g-----------~~~l~~~~ 404 (430)
T PRK00178 354 -------------NFHVAAQDLQRGSVRILTDTSL-----DESPSVAPNGTMLIYATRQQG-----------RGVLMLVS 404 (430)
T ss_pred -------------ceEEEEEECCCCCEEEccCCCC-----CCCceECCCCCEEEEEEecCC-----------ceEEEEEE
Confidence 1248999999888877754211 111112226676666544221 23477777
Q ss_pred CCC
Q 005655 338 LDN 340 (685)
Q Consensus 338 ~~t 340 (685)
+..
T Consensus 405 ~~g 407 (430)
T PRK00178 405 ING 407 (430)
T ss_pred CCC
Confidence 653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=94.86 E-value=4.5 Score=40.08 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=53.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++...| ++.++++|+. + +.+++|+..+..-....... . ..-..+... ++..+++|+..
T Consensus 14 ~~~~~~--~~~~l~~~~~--~-------g~i~i~~~~~~~~~~~~~~~--~-~~i~~~~~~~~~~~l~~~~~~------- 72 (289)
T cd00200 14 CVAFSP--DGKLLATGSG--D-------GTIKVWDLETGELLRTLKGH--T-GPVRDVAASADGTYLASGSSD------- 72 (289)
T ss_pred EEEEcC--CCCEEEEeec--C-------cEEEEEEeeCCCcEEEEecC--C-cceeEEEECCCCCEEEEEcCC-------
Confidence 344454 4567777773 2 36778888766422111110 1 111122233 34466666642
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
..+.+||+.+......-. .. ...-.++... ++.+++.|+. ...+.+||+.+..
T Consensus 73 ----~~i~i~~~~~~~~~~~~~--~~-~~~i~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~ 126 (289)
T cd00200 73 ----KTIRLWDLETGECVRTLT--GH-TSYVSSVAFSPDGRILSSSSR---------DKTIKVWDVETGK 126 (289)
T ss_pred ----CeEEEEEcCcccceEEEe--cc-CCcEEEEEEcCCCCEEEEecC---------CCeEEEEECCCcE
Confidence 457888887753221111 01 1111222222 3356665552 2468888887544
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.86 E-value=9.1 Score=43.57 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=65.1
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCC--CCCCc-ceeEEEEEC-CEEEEEcCccCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN--SPPPR-SAHQAVSWK-NYLYIFGGEFTS 146 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~--~P~~R-~~ha~v~~~-~~iyvfGG~~~s 146 (685)
+.++. ++.||+.... ..|+++|+.+. .|+.-.... ...+. ....+++.+ +.||+...
T Consensus 56 sPvv~---~g~vy~~~~~----------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---- 118 (488)
T cd00216 56 TPLVV---DGDMYFTTSH----------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---- 118 (488)
T ss_pred CCEEE---CCEEEEeCCC----------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC----
Confidence 33455 6888876541 46899999876 488532211 00010 111233445 77776432
Q ss_pred CCCccccccCeEEEEECCCCc--EEEcccCCC-CCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC--ce
Q 005655 147 PNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KW 221 (685)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~-P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W 221 (685)
-..++.||..|++ |+.-..... +......+.++.++.+|+ |..............+++||..+. .|
T Consensus 119 --------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 119 --------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred --------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceee
Confidence 1468899988764 876433110 001122334555666665 322111000012457899999875 48
Q ss_pred EEec
Q 005655 222 QEIK 225 (685)
Q Consensus 222 ~~v~ 225 (685)
..-.
T Consensus 190 ~~~~ 193 (488)
T cd00216 190 RFYT 193 (488)
T ss_pred Eeec
Confidence 7543
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.5 Score=46.53 Aligned_cols=146 Identities=15% Similarity=0.079 Sum_probs=79.5
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (685)
..++++|+.++....+.. .+..... .+.. ++ .|++.....+ ..++|.+|+.+.....+....
T Consensus 214 ~~i~v~d~~~g~~~~~~~--~~~~~~~--~~~spDg~~l~~~~~~~~-------~~~i~~~d~~~~~~~~l~~~~----- 277 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS--FPGMNGA--PAFSPDGSKLAVSLSKDG-------NPDIYVMDLDGKQLTRLTNGP----- 277 (417)
T ss_pred cEEEEEECCCCCEEEeec--CCCCccc--eEECCCCCEEEEEECCCC-------CccEEEEECCCCCEEECCCCC-----
Confidence 579999999887766554 2222221 2222 33 5555433211 357999999988877775431
Q ss_pred CCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEe
Q 005655 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (685)
Q Consensus 234 ~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvf 312 (685)
...........+..|++.....+ ...+|.+++.+..+.++...+ ......++. +++.+++
T Consensus 278 ~~~~~~~~s~dg~~l~~~s~~~g--------------~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 278 GIDTEPSWSPDGKSIAFTSDRGG--------------SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAF 338 (417)
T ss_pred CCCCCEEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEE
Confidence 11111122222444554433221 136899999888887775432 112222332 5666666
Q ss_pred cceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
..... -...|+.||+.+..+..+.
T Consensus 339 ~~~~~-----------~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 339 VHREG-----------GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred EEccC-----------CceEEEEEeCCCCCeEEcc
Confidence 54422 1346999999887665544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=94.62 E-value=5.2 Score=39.64 Aligned_cols=69 Identities=10% Similarity=0.110 Sum_probs=35.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEEC-CEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~~-~~iyvfGG~~~s~~~~ 150 (685)
.+...| ++..+++|+. -+.+++|++.+.... .+.. ....-.++.... +.+++.|+..
T Consensus 56 ~~~~~~--~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~------ 114 (289)
T cd00200 56 DVAASA--DGTYLASGSS---------DKTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGRILSSSSRD------ 114 (289)
T ss_pred EEEECC--CCCEEEEEcC---------CCeEEEEEcCcccceEEEec----cCCcEEEEEEcCCCCEEEEecCC------
Confidence 344444 4456666663 246888888875322 2211 111122333333 4566666521
Q ss_pred cccccCeEEEEECCCCc
Q 005655 151 RFHHYKDFWMLDLKTNQ 167 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~ 167 (685)
..+.+||+.+..
T Consensus 115 -----~~i~~~~~~~~~ 126 (289)
T cd00200 115 -----KTIKVWDVETGK 126 (289)
T ss_pred -----CeEEEEECCCcE
Confidence 458888887554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=9.7 Score=42.56 Aligned_cols=167 Identities=9% Similarity=-0.007 Sum_probs=87.6
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
..+|++++.+++-+.++... ....+.+.. + ..|++...... ..++|++|+.++...++... +
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~----~~~~~~~~SPDG~~La~~~~~~g---------~~~I~~~d~~tg~~~~lt~~--~- 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG---------SLNLYVMDLASGQIRQVTDG--R- 286 (429)
T ss_pred cEEEEEECCCCCeEEccCCC----CCcCCeEECCCCCEEEEEEcCCC---------CcEEEEEECCCCCEEEccCC--C-
Confidence 46889999888777665431 111122222 3 34554432211 24699999999988877542 1
Q ss_pred CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccC
Q 005655 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256 (685)
Q Consensus 179 ~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~ 256 (685)
.......| ++..++|..... + ...+|.+|+.+..-.++... ............+..|++.+....
T Consensus 287 --~~~~~~~wSPDG~~I~f~s~~~-g-----~~~Iy~~d~~~g~~~~lt~~-----~~~~~~~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 287 --SNNTEPTWFPDSQNLAYTSDQA-G-----RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred --CCcCceEECCCCCEEEEEeCCC-C-----CceEEEEECCCCCeEEeecC-----CCCccCEEECCCCCEEEEEEccCC
Confidence 22233334 444444433211 1 24789999988777766543 111112222222444544443221
Q ss_pred CCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecce
Q 005655 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (685)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (685)
...++.+|+.+..+..+.... ........-+++.++|.+.
T Consensus 354 --------------~~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 354 --------------QQHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred --------------CceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEc
Confidence 135889999988888776421 1111112236777777665
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=8.9 Score=41.37 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=78.2
Q ss_pred CcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEEC
Q 005655 111 QEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189 (685)
Q Consensus 111 ~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~ 189 (685)
.+|+.+..+. ..+...+.+.++ ++.+|+.|.. ..+++-+-.-.+|+.+.. +..-+-+.+....
T Consensus 119 ~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~g~~------------G~i~~S~DgG~tW~~~~~---~~~g~~~~i~~~~ 182 (334)
T PRK13684 119 KNWTRIPLSE-KLPGSPYLITALGPGTAEMATNV------------GAIYRTTDGGKNWEALVE---DAAGVVRNLRRSP 182 (334)
T ss_pred CCCeEccCCc-CCCCCceEEEEECCCcceeeecc------------ceEEEECCCCCCceeCcC---CCcceEEEEEECC
Confidence 4899886431 122233334444 3556666542 234444445578998865 2233445555554
Q ss_pred CEEEEEccccCCCCceeeeceEEE-EEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCC
Q 005655 190 HKIIVFGGFYDTLREVRYYNDLYV-FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (685)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~-yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~ 267 (685)
+..|+..|..+ .++. .+....+|+.+.. +..+.-++++.. ++.+|++|... .
T Consensus 183 ~g~~v~~g~~G---------~i~~s~~~gg~tW~~~~~------~~~~~l~~i~~~~~g~~~~vg~~G-~---------- 236 (334)
T PRK13684 183 DGKYVAVSSRG---------NFYSTWEPGQTAWTPHQR------NSSRRLQSMGFQPDGNLWMLARGG-Q---------- 236 (334)
T ss_pred CCeEEEEeCCc---------eEEEEcCCCCCeEEEeeC------CCcccceeeeEcCCCCEEEEecCC-E----------
Confidence 44444444322 1222 2334457998854 334455555554 67788887542 1
Q ss_pred CceeeeEEEE--eCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecce
Q 005655 268 GIIHSDLWSL--DPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (685)
Q Consensus 268 ~~~~~dv~~y--d~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~ 315 (685)
.++ +-...+|+.+..... .....-+++++. .+.+|++|..
T Consensus 237 -------~~~~s~d~G~sW~~~~~~~~-~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 237 -------IRFNDPDDLESWSKPIIPEI-TNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred -------EEEccCCCCCccccccCCcc-ccccceeeEEEcCCCCEEEEcCC
Confidence 123 223458997643100 011222344444 5678888753
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=4.9 Score=44.93 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=75.1
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEECC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
..+|++|+.++....+.. .+..-... ...-++ .|++.....+ ..++|++|+.+....++... +.
T Consensus 226 ~~i~~~dl~~g~~~~l~~--~~g~~~~~-~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~Lt~~-----~~ 290 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN--FPGMTFAP-RFSPDGRKVVMSLSQGG-------NTDIYTMDLRSGTTTRLTDS-----PA 290 (435)
T ss_pred CEEEEEECCCCcEEEeec--CCCcccCc-EECCCCCEEEEEEecCC-------CceEEEEECCCCceEEccCC-----CC
Confidence 579999999998887764 22211111 111244 4444332211 35799999998887776544 21
Q ss_pred CccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE-ECCeEEEec
Q 005655 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFG 313 (685)
Q Consensus 235 ~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~-~~~~iyvfG 313 (685)
.-...+....+..|++.....+ ...+|++|+.+....++... ..+.. .... -+++.++|.
T Consensus 291 ~~~~~~~spDG~~i~f~s~~~g--------------~~~Iy~~d~~g~~~~~lt~~----~~~~~-~~~~SpdG~~ia~~ 351 (435)
T PRK05137 291 IDTSPSYSPDGSQIVFESDRSG--------------SPQLYVMNADGSNPRRISFG----GGRYS-TPVWSPRGDLIAFT 351 (435)
T ss_pred ccCceeEcCCCCEEEEEECCCC--------------CCeEEEEECCCCCeEEeecC----CCccc-CeEECCCCCEEEEE
Confidence 1112222222444544322111 13589999888777776532 11111 1222 244444443
Q ss_pred ceecccCCccccccccCCcEEEEECCCCcEEEE
Q 005655 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (685)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (685)
.... . ...++.+|+.+.....+
T Consensus 352 ~~~~---------~--~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 352 KQGG---------G--QFSIGVMKPDGSGERIL 373 (435)
T ss_pred EcCC---------C--ceEEEEEECCCCceEec
Confidence 3211 0 24689999877655443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=5.3 Score=44.45 Aligned_cols=146 Identities=11% Similarity=0.092 Sum_probs=79.1
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..+|++|+.++.-..+.. .+. .. ....| ++ +|++.....+ ..++|++|+.+.....+...
T Consensus 223 ~~l~~~~l~~g~~~~l~~--~~g--~~-~~~~~SpDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~----- 285 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN--FEG--LN-GAPAWSPDGSKLAFVLSKDG-------NPEIYVMDLASRQLSRVTNH----- 285 (430)
T ss_pred CEEEEEECCCCCEEEccC--CCC--Cc-CCeEECCCCCEEEEEEccCC-------CceEEEEECCCCCeEEcccC-----
Confidence 479999999998877754 121 11 12233 33 4544322111 25799999999988877643
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEE
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv 311 (685)
+..-........+..||+.....+ ...+|.+++.+..+.++...+ .......+. +++.++
T Consensus 286 ~~~~~~~~~spDg~~i~f~s~~~g--------------~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 286 PAIDTEPFWGKDGRTLYFTSDRGG--------------KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLV 346 (430)
T ss_pred CCCcCCeEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEE
Confidence 111122222223455655432211 135899999888888775422 111122222 444444
Q ss_pred ecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
|....+ + ...|+.+|+.+..+..+..
T Consensus 347 ~~~~~~---------~--~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 347 MVHRQD---------G--NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EEEccC---------C--ceEEEEEECCCCCEEEccC
Confidence 433221 0 2359999999988776653
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=94.13 E-value=7.8 Score=39.70 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=55.2
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEE-ecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~-l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
++.+.|. +..+|+.++. .+.+++||+.+.+... ++.. +.+ +.++.. ++.+|+.++.
T Consensus 35 ~l~~~~d-g~~l~~~~~~---------~~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~------ 93 (300)
T TIGR03866 35 GITLSKD-GKLLYVCASD---------SDTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANED------ 93 (300)
T ss_pred ceEECCC-CCEEEEEECC---------CCeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCC------
Confidence 3555552 3456676652 2468899998877653 3221 112 223332 3456666542
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
-+.+.+||+.+..-... .+....-+++++. ++.+++++... .+.++.||+.+..
T Consensus 94 -----~~~l~~~d~~~~~~~~~----~~~~~~~~~~~~~~dg~~l~~~~~~--------~~~~~~~d~~~~~ 148 (300)
T TIGR03866 94 -----DNLVTVIDIETRKVLAE----IPVGVEPEGMAVSPDGKIVVNTSET--------TNMAHFIDTKTYE 148 (300)
T ss_pred -----CCeEEEEECCCCeEEeE----eeCCCCcceEEECCCCCEEEEEecC--------CCeEEEEeCCCCe
Confidence 14588899987542211 1111111233332 56666665432 1245667876654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=4.7 Score=45.06 Aligned_cols=144 Identities=10% Similarity=0.108 Sum_probs=76.8
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..+|++|+.++....+.. .+.. .. ...+ ++ +|++.....+ ..++|++|+.+....++...
T Consensus 228 ~~l~~~dl~~g~~~~l~~--~~g~-~~--~~~~SpDG~~l~~~~s~~g-------~~~Iy~~d~~~g~~~~lt~~----- 290 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS--FRGI-NG--APSFSPDGRRLALTLSRDG-------NPEIYVMDLGSRQLTRLTNH----- 290 (433)
T ss_pred cEEEEEECCCCCEEEecc--CCCC-cc--CceECCCCCEEEEEEeCCC-------CceEEEEECCCCCeEECccC-----
Confidence 569999999988877754 2211 11 2223 34 4544332211 25799999998877666543
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCe-EE
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR-AL 310 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~-iy 310 (685)
+..-...+....+..|++.....+ ...+|.++..+..+.++...+ ....+.++. +++ |+
T Consensus 291 ~~~~~~~~~spDG~~l~f~sd~~g--------------~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 291 FGIDTEPTWAPDGKSIYFTSDRGG--------------RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIA 351 (433)
T ss_pred CCCccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEE
Confidence 111112222222344444432211 136899999888888775432 111222332 444 44
Q ss_pred EecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
+..+..+ -..|++||+.+..+..+.
T Consensus 352 ~~~~~~~------------~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 352 MVHGSGG------------QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred EEECCCC------------ceeEEEEECCCCCeEECC
Confidence 4333211 136999999888776554
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=10 Score=40.40 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=54.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcC-CCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~-~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~ 148 (685)
+.+++.|. +..||+.+.. .+.+..|++. ++.+..+.... .+..-+.++.. +..||+.+-.
T Consensus 38 ~~l~~spd-~~~lyv~~~~---------~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~----- 100 (330)
T PRK11028 38 QPMVISPD-KRHLYVGVRP---------EFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYN----- 100 (330)
T ss_pred ccEEECCC-CCEEEEEECC---------CCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcC-----
Confidence 44566663 3556664431 1457777776 45666444321 11112233333 3456665421
Q ss_pred CccccccCeEEEEECCCCc--EEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 149 QERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
-+.+.+|++.++. ...+.. .+....-|.+++. +++||+..- ..+.|++||+.+.
T Consensus 101 ------~~~v~v~~~~~~g~~~~~~~~--~~~~~~~~~~~~~p~g~~l~v~~~---------~~~~v~v~d~~~~ 158 (330)
T PRK11028 101 ------ANCVSVSPLDKDGIPVAPIQI--IEGLEGCHSANIDPDNRTLWVPCL---------KEDRIRLFTLSDD 158 (330)
T ss_pred ------CCeEEEEEECCCCCCCCceee--ccCCCcccEeEeCCCCCEEEEeeC---------CCCEEEEEEECCC
Confidence 1456677775321 122211 1222223554444 346666432 1467899998763
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=8.7 Score=42.94 Aligned_cols=147 Identities=10% Similarity=0.057 Sum_probs=77.2
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..+|++|+.++.-..+.. .+.. .+ ...+ ++ +|++.....+ ..++|++|+.+....++...
T Consensus 223 ~~i~i~dl~~G~~~~l~~--~~~~-~~--~~~~SPDG~~La~~~~~~g-------~~~I~~~d~~tg~~~~lt~~----- 285 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS--FPRH-NG--APAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG----- 285 (429)
T ss_pred cEEEEEECCCCCeEEccC--CCCC-cC--CeEECCCCCEEEEEEcCCC-------CcEEEEEECCCCCEEEccCC-----
Confidence 468999998887766654 2211 11 1223 34 4554432211 24699999999887777543
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEe
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLF 312 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvf 312 (685)
+..-........+..|++.....+ ...+|.+|+.+....++...+ .........-+++.++|
T Consensus 286 ~~~~~~~~wSPDG~~I~f~s~~~g--------------~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~ 347 (429)
T PRK03629 286 RSNNTEPTWFPDSQNLAYTSDQAG--------------RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVM 347 (429)
T ss_pred CCCcCceEECCCCCEEEEEeCCCC--------------CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEE
Confidence 211122222222344444332211 136889998887766664321 11111111224555555
Q ss_pred cceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.+.... ...|+.+|+.++.+..+..
T Consensus 348 ~~~~~g-----------~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 348 VSSNGG-----------QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred EEccCC-----------CceEEEEECCCCCeEEeCC
Confidence 433210 2469999999998877653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=8.2 Score=43.06 Aligned_cols=145 Identities=12% Similarity=0.087 Sum_probs=74.8
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..+|++|+.++.=..+.. .+. . ..+..| ++ +|++.....+ ..++|.+|+.+....++...
T Consensus 220 ~~I~~~dl~~g~~~~l~~--~~g--~-~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~----- 282 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN--FKG--S-NSAPAWSPDGRTLAVALSRDG-------NSQIYTVNADGSGLRRLTQS----- 282 (427)
T ss_pred cEEEEEECCCCCEEEeec--CCC--C-ccceEECCCCCEEEEEEccCC-------CceEEEEECCCCCcEECCCC-----
Confidence 469999999887665543 121 1 112333 34 4544333221 35799999987776666443
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEE
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv 311 (685)
.......+....+..|++.....+ ...+|.++..+....++...+ ....+.++. +++.++
T Consensus 283 ~~~~~~~~wSpDG~~l~f~s~~~g--------------~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 283 SGIDTEPFFSPDGRSIYFTSDRGG--------------APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLA 343 (427)
T ss_pred CCCCcCeEEcCCCCEEEEEecCCC--------------CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEE
Confidence 111112222222444554332111 135888988877777775322 111122222 454444
Q ss_pred ecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
|....+ + ...|++||+.+.....+.
T Consensus 344 ~~s~~~---------g--~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 344 YISRVG---------G--AFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEccC---------C--cEEEEEEECCCCCeEEcc
Confidence 443221 0 136999999888766554
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=93.37 E-value=2.8 Score=44.77 Aligned_cols=142 Identities=18% Similarity=0.279 Sum_probs=86.5
Q ss_pred CEEEEEcCeecCCCceeee-ccEEEEEcCCC-----cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCcccccc
Q 005655 82 TELILYGGEFYNGNKTYVY-GDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~-ndv~~yd~~~~-----~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~ 155 (685)
..++|+|-.+..+...... ..+++|++... +++.+.... .+-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~--~~g~V~ai~~~~~~lv~~~g------------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE--VKGPVTAICSFNGRLVVAVG------------- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE--ESS-EEEEEEETTEEEEEET-------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe--ecCcceEhhhhCCEEEEeec-------------
Confidence 5788888766554433233 77999999985 666665433 23335777788998777666
Q ss_pred CeEEEEECCCCc-EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 156 KDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 156 ~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
+.+.+|++.... +..... ...+-.-.++.+++++|++ |-... .-.++.|+....+-..+... +.
T Consensus 107 ~~l~v~~l~~~~~l~~~~~--~~~~~~i~sl~~~~~~I~v-gD~~~-------sv~~~~~~~~~~~l~~va~d-----~~ 171 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAF--YDSPFYITSLSVFKNYILV-GDAMK-------SVSLLRYDEENNKLILVARD-----YQ 171 (321)
T ss_dssp TEEEEEEEETTSSEEEEEE--E-BSSSEEEEEEETTEEEE-EESSS-------SEEEEEEETTTE-EEEEEEE-----SS
T ss_pred CEEEEEEccCcccchhhhe--ecceEEEEEEeccccEEEE-EEccc-------CEEEEEEEccCCEEEEEEec-----CC
Confidence 457788887777 887776 3344466677777886665 33211 12345667766667777665 56
Q ss_pred CccceeEEEe-CCEEEEEec
Q 005655 235 PRSGFQFFVY-QDEVFLYGG 253 (685)
Q Consensus 235 ~Rs~~s~~~~-~~~Iyv~GG 253 (685)
++...++..+ ++..++.+-
T Consensus 172 ~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 172 PRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp -BEEEEEEEE-SSSEEEEEE
T ss_pred CccEEEEEEecCCcEEEEEc
Confidence 7776666666 544444443
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=13 Score=41.43 Aligned_cols=194 Identities=13% Similarity=0.168 Sum_probs=106.3
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.++|++|+.+++=+.++... .........-+ ..|++.-.... ..++|++|+.++.++++.. .+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~---g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~dl~~g~~~~LT~--~~~- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ---GMLVVSDVSKDGSKLLLTMAPKG---------QPDIYLYDTNTKTLTQITN--YPG- 277 (419)
T ss_pred CEEEEEECCCCcEEEEecCC---CcEEeeEECCCCCEEEEEEccCC---------CcEEEEEECCCCcEEEccc--CCC-
Confidence 37999999988777776421 11111112223 35554433211 2589999999999999865 222
Q ss_pred CccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC
Q 005655 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 180 Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
..+..... +..||+.-...+ ..+||++|+.+....++... + .+.......+..|++.......
T Consensus 278 -~d~~p~~SPDG~~I~F~Sdr~g-------~~~Iy~~dl~~g~~~rlt~~--g-----~~~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 278 -IDVNGNFVEDDKRIVFVSDRLG-------YPNIFMKKLNSGSVEQVVFH--G-----KNNSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred -ccCccEECCCCCEEEEEECCCC-------CceEEEEECCCCCeEeCccC--C-----CcCceECCCCCEEEEEEcCCCc
Confidence 11111211 346666543321 35899999999988877653 1 1122333335555544432211
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEE
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (685)
..+....+++++|+.+..+..+...+ ....-...-+|+.++|-.... ....|+.++
T Consensus 343 --------~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~-----------~~~~L~~~~ 398 (419)
T PRK04043 343 --------EFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYLG-----------NQSALGIIR 398 (419)
T ss_pred --------ccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEccC-----------CcEEEEEEe
Confidence 00111357999999999988886532 111111122565555543221 134699999
Q ss_pred CCCCcEEEEEe
Q 005655 338 LDNHRWYPLEL 348 (685)
Q Consensus 338 ~~t~~W~~l~~ 348 (685)
+..+.=..++.
T Consensus 399 l~g~~~~~l~~ 409 (419)
T PRK04043 399 LNYNKSFLFPL 409 (419)
T ss_pred cCCCeeEEeec
Confidence 98776666654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=92.79 E-value=12 Score=37.95 Aligned_cols=163 Identities=12% Similarity=0.111 Sum_probs=85.5
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCC--C-CCCcceeEEEEECCEEEEEcCccCCCCCccccccCe
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN--S-PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~--~-P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
++.|||... ..+.++|+.+++++.+.... . +..+.+..++.-++.||+.--....... .....
T Consensus 51 ~g~l~v~~~-----------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~---~~~g~ 116 (246)
T PF08450_consen 51 DGRLYVADS-----------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASG---IDPGS 116 (246)
T ss_dssp TSEEEEEET-----------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTC---GGSEE
T ss_pred CCEEEEEEc-----------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccc---ccccc
Confidence 577777665 23466799999998776541 1 3344444444446888876432211111 00167
Q ss_pred EEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCC--CceEEeccCCCCCCC
Q 005655 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--FKWQEIKPRFGSMWP 233 (685)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t--~~W~~v~~~~~~~~P 233 (685)
+|++++. ++...+... + ..-.++++- ++.||+.-- ..+.||.|++.. ..+....... ..+
T Consensus 117 v~~~~~~-~~~~~~~~~-~---~~pNGi~~s~dg~~lyv~ds---------~~~~i~~~~~~~~~~~~~~~~~~~--~~~ 180 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADG-L---GFPNGIAFSPDGKTLYVADS---------FNGRIWRFDLDADGGELSNRRVFI--DFP 180 (246)
T ss_dssp EEEEETT-SEEEEEEEE-E---SSEEEEEEETTSSEEEEEET---------TTTEEEEEEEETTTCCEEEEEEEE--E-S
T ss_pred eEEECCC-CeEEEEecC-c---ccccceEECCcchheeeccc---------ccceeEEEeccccccceeeeeeEE--EcC
Confidence 9999998 666665431 1 112234443 346777422 245699998864 3243222110 001
Q ss_pred CC-ccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 234 SP-RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 234 ~~-Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
.. ..--.+++. ++.||+..-... .|++|++....-..+..
T Consensus 181 ~~~g~pDG~~vD~~G~l~va~~~~~----------------~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 181 GGPGYPDGLAVDSDGNLWVADWGGG----------------RIVVFDPDGKLLREIEL 222 (246)
T ss_dssp SSSCEEEEEEEBTTS-EEEEEETTT----------------EEEEEETTSCEEEEEE-
T ss_pred CCCcCCCcceEcCCCCEEEEEcCCC----------------EEEEECCCccEEEEEcC
Confidence 11 112234444 788888643222 38999999666666653
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=92.76 E-value=34 Score=42.92 Aligned_cols=159 Identities=9% Similarity=0.094 Sum_probs=85.1
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC-----------CCccceEEEE--CCEEEEEccccC
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS-----------PRSGHRMVLY--KHKIIVFGGFYD 200 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-----------~Rsgh~~v~~--~~~lyv~GG~~~ 200 (685)
++.|||.... .+.+|+||+.++....+...+... ...-+++++. ++.|||....
T Consensus 694 ~g~LyVad~~-----------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-- 760 (1057)
T PLN02919 694 NEKVYIAMAG-----------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-- 760 (1057)
T ss_pred CCeEEEEECC-----------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--
Confidence 4778887532 256899999887665543322100 0111223333 3468887542
Q ss_pred CCCceeeeceEEEEEcCCCceEEeccCC---------CC----CCCCCcc--ceeEEEe-CCEEEEEecccCCCCcccCC
Q 005655 201 TLREVRYYNDLYVFDLDQFKWQEIKPRF---------GS----MWPSPRS--GFQFFVY-QDEVFLYGGYSKEVSTDKNQ 264 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W~~v~~~~---------~~----~~P~~Rs--~~s~~~~-~~~Iyv~GG~~~~~~~~~~~ 264 (685)
.+.|.+||+.+.....+.... .+ .....+. -.++++. ++.|||....+..
T Consensus 761 -------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r------- 826 (1057)
T PLN02919 761 -------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK------- 826 (1057)
T ss_pred -------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE-------
Confidence 367999998876543322100 00 0000001 1133333 5678887665443
Q ss_pred CCCCceeeeEEEEeCCCceeEEeecCCCC--C-----CC--cceeEEEEE-CCeEEEecceecccCCccccccccCCcEE
Q 005655 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMP--P-----GP--RAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (685)
Q Consensus 265 ~~~~~~~~dv~~yd~~t~~W~~~~~~g~~--P-----~~--R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (685)
+.+||+.+.....+...|.. + .. ..-+++++. ++++||.... .+.|.
T Consensus 827 ---------IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~--------------Nn~Ir 883 (1057)
T PLN02919 827 ---------IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN--------------NSLIR 883 (1057)
T ss_pred ---------EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC--------------CCEEE
Confidence 88999988877766543321 0 00 111234443 6788887543 35688
Q ss_pred EEECCCCc
Q 005655 335 GFQLDNHR 342 (685)
Q Consensus 335 ~yd~~t~~ 342 (685)
++|+.+..
T Consensus 884 vid~~~~~ 891 (1057)
T PLN02919 884 YLDLNKGE 891 (1057)
T ss_pred EEECCCCc
Confidence 99998875
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.63 E-value=3.8 Score=42.38 Aligned_cols=109 Identities=20% Similarity=0.297 Sum_probs=76.3
Q ss_pred EEE-ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccC
Q 005655 185 MVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263 (685)
Q Consensus 185 ~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~ 263 (685)
... .++.||.--|..+ -+.|..||+.+.+-...... |..-+|=+++.++++||.+--..+.
T Consensus 50 L~~~~~g~LyESTG~yG-------~S~l~~~d~~tg~~~~~~~l-----~~~~FgEGit~~~d~l~qLTWk~~~------ 111 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYG-------QSSLRKVDLETGKVLQSVPL-----PPRYFGEGITILGDKLYQLTWKEGT------ 111 (264)
T ss_dssp EEEEETTEEEEEECSTT-------EEEEEEEETTTSSEEEEEE------TTT--EEEEEEETTEEEEEESSSSE------
T ss_pred EEecCCCEEEEeCCCCC-------cEEEEEEECCCCcEEEEEEC-----CccccceeEEEECCEEEEEEecCCe------
Confidence 444 5789999888765 36788999999987766665 6677888999999999999776655
Q ss_pred CCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
+++||+.+. ..+... +-+.-|-++|..+..+|+--|. +.|+.+||.+-
T Consensus 112 ----------~f~yd~~tl--~~~~~~---~y~~EGWGLt~dg~~Li~SDGS---------------~~L~~~dP~~f 159 (264)
T PF05096_consen 112 ----------GFVYDPNTL--KKIGTF---PYPGEGWGLTSDGKRLIMSDGS---------------SRLYFLDPETF 159 (264)
T ss_dssp ----------EEEEETTTT--EEEEEE---E-SSS--EEEECSSCEEEE-SS---------------SEEEEE-TTT-
T ss_pred ----------EEEEccccc--eEEEEE---ecCCcceEEEcCCCEEEEECCc---------------cceEEECCccc
Confidence 889999864 333321 2345788888888889988885 45999999864
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=92.43 E-value=5 Score=42.77 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=83.4
Q ss_pred CEEEEEcCccCCCCCcccccc-CeEEEEECCCC-----cEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeee
Q 005655 135 NYLYIFGGEFTSPNQERFHHY-KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYY 208 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~-~dv~~yD~~t~-----~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~ 208 (685)
..++|+|.....+.. .... ..+..|++... .+..+... +..-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~--~~~~~Gri~v~~i~~~~~~~~~l~~i~~~--~~~g~V~ai~~~~~~lv~~~g----------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGED--PEPSSGRILVFEISESPENNFKLKLIHST--EVKGPVTAICSFNGRLVVAVG----------- 106 (321)
T ss_dssp SEEEEEEEEE--TTS--SS-S-EEEEEEEECSS-----EEEEEEEE--EESS-EEEEEEETTEEEEEET-----------
T ss_pred cCEEEEEeccccccc--ccccCcEEEEEEEEcccccceEEEEEEEE--eecCcceEhhhhCCEEEEeec-----------
Confidence 467777765443222 1112 56889998885 56655442 222335567777999776655
Q ss_pred ceEEEEEcCCCc-eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 209 NDLYVFDLDQFK-WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 209 ~dv~~yD~~t~~-W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
+.+.+|++.... +...... ..+-...++.++++.|+ +|-.... -.++.|+....+-..+
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~-----~~~~~i~sl~~~~~~I~-vgD~~~s--------------v~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFY-----DSPFYITSLSVFKNYIL-VGDAMKS--------------VSLLRYDEENNKLILV 166 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE------BSSSEEEEEEETTEEE-EEESSSS--------------EEEEEEETTTE-EEEE
T ss_pred CEEEEEEccCcccchhhhee-----cceEEEEEEeccccEEE-EEEcccC--------------EEEEEEEccCCEEEEE
Confidence 467888888777 8888776 33445666666778555 4433322 1255678766667777
Q ss_pred ecCCCCCCCcceeEEEEE-CCeEEEecce
Q 005655 288 KKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (685)
Q Consensus 288 ~~~g~~P~~R~g~s~~~~-~~~iyvfGG~ 315 (685)
+.. +.++...++.++ ++. .++++-
T Consensus 167 a~d---~~~~~v~~~~~l~d~~-~~i~~D 191 (321)
T PF03178_consen 167 ARD---YQPRWVTAAEFLVDED-TIIVGD 191 (321)
T ss_dssp EEE---SS-BEEEEEEEE-SSS-EEEEEE
T ss_pred Eec---CCCccEEEEEEecCCc-EEEEEc
Confidence 653 447777777777 655 444443
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.32 E-value=5.8 Score=41.10 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=74.9
Q ss_pred ECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEE
Q 005655 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 133 ~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
.++.||.--|..+ -+.+.+||+.|++-..... +|..-.+-+++.++++||..-=. ....+
T Consensus 54 ~~g~LyESTG~yG---------~S~l~~~d~~tg~~~~~~~--l~~~~FgEGit~~~d~l~qLTWk---------~~~~f 113 (264)
T PF05096_consen 54 DDGTLYESTGLYG---------QSSLRKVDLETGKVLQSVP--LPPRYFGEGITILGDKLYQLTWK---------EGTGF 113 (264)
T ss_dssp ETTEEEEEECSTT---------EEEEEEEETTTSSEEEEEE---TTT--EEEEEEETTEEEEEESS---------SSEEE
T ss_pred CCCEEEEeCCCCC---------cEEEEEEECCCCcEEEEEE--CCccccceeEEEECCEEEEEEec---------CCeEE
Confidence 4688998888644 2678899999998665555 67778899999999999998543 45789
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
+||+.+. ..+... +.+.-|.+++..+..||+--|.+ .++.+||.+.+
T Consensus 114 ~yd~~tl--~~~~~~-----~y~~EGWGLt~dg~~Li~SDGS~-----------------~L~~~dP~~f~ 160 (264)
T PF05096_consen 114 VYDPNTL--KKIGTF-----PYPGEGWGLTSDGKRLIMSDGSS-----------------RLYFLDPETFK 160 (264)
T ss_dssp EEETTTT--EEEEEE-----E-SSS--EEEECSSCEEEE-SSS-----------------EEEEE-TTT-S
T ss_pred EEccccc--eEEEEE-----ecCCcceEEEcCCCEEEEECCcc-----------------ceEEECCcccc
Confidence 9999864 455444 45568888998888999988753 38889998754
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=18 Score=38.51 Aligned_cols=128 Identities=9% Similarity=0.025 Sum_probs=56.3
Q ss_pred ccEEEEEcCCCc--EEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCC-cEEEcccC-
Q 005655 101 GDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLK- 174 (685)
Q Consensus 101 ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~-~W~~~~~~- 174 (685)
+.+.+|++.++. ...+... +....-|++++. +..+|+..- ..+.+++||+.+. ........
T Consensus 102 ~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~-----------~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCL-----------KEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred CeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeC-----------CCCEEEEEEECCCCcccccCCCc
Confidence 456777775431 1112111 122223555554 246666442 1357899998763 22211000
Q ss_pred -CCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcC--CCceEEe---ccCCCCCCCCCccceeEEEe--
Q 005655 175 -GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLD--QFKWQEI---KPRFGSMWPSPRSGFQFFVY-- 244 (685)
Q Consensus 175 -g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~--t~~W~~v---~~~~~~~~P~~Rs~~s~~~~-- 244 (685)
..+.+..-+.++.. +.++|+.-.. .+.|.+|++. +.+...+ ...|. ..+.+|....+...
T Consensus 169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~---------~~~v~v~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 169 VTTVEGAGPRHMVFHPNQQYAYCVNEL---------NSSVDVWQLKDPHGEIECVQTLDMMPA-DFSDTRWAADIHITPD 238 (330)
T ss_pred eecCCCCCCceEEECCCCCEEEEEecC---------CCEEEEEEEeCCCCCEEEEEEEecCCC-cCCCCccceeEEECCC
Confidence 01111111223333 3478886332 3667777765 3454333 22211 11334544344444
Q ss_pred CCEEEEE
Q 005655 245 QDEVFLY 251 (685)
Q Consensus 245 ~~~Iyv~ 251 (685)
+..+|+.
T Consensus 239 g~~lyv~ 245 (330)
T PRK11028 239 GRHLYAC 245 (330)
T ss_pred CCEEEEe
Confidence 4456765
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=92.03 E-value=22 Score=39.20 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=85.0
Q ss_pred CeEEEEECCCC-----cEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc---eEEeccC
Q 005655 156 KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPR 227 (685)
Q Consensus 156 ~dv~~yD~~t~-----~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~---W~~v~~~ 227 (685)
+.+|.+++... .|..+.+ +..-..+.+...++.+|+...... ....|..+++.+.. |..+-..
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~---~~~~~~~~v~~~~~~~yi~Tn~~a------~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSP---REDGVEYYVDHHGDRLYILTNDDA------PNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEE---SSSS-EEEEEEETTEEEEEE-TT-------TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred CeEEEEeccccCCCcCCcEEEeC---CCCceEEEEEccCCEEEEeeCCCC------CCcEEEEecccccccccceeEEcC
Confidence 78999999875 7888765 222333334456889999876322 24578888888765 6644333
Q ss_pred CCCCCCCC-ccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC-CceeEEeecCCCCCCCcceeEEEEE
Q 005655 228 FGSMWPSP-RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 228 ~~~~~P~~-Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
+.. ..--.+.+.++.|++.-=.+ ....+.+|++. +..-..+.. |. .|....+.
T Consensus 323 -----~~~~~~l~~~~~~~~~Lvl~~~~~--------------~~~~l~v~~~~~~~~~~~~~~----p~--~g~v~~~~ 377 (414)
T PF02897_consen 323 -----EDEDVSLEDVSLFKDYLVLSYREN--------------GSSRLRVYDLDDGKESREIPL----PE--AGSVSGVS 377 (414)
T ss_dssp ------SSSEEEEEEEEETTEEEEEEEET--------------TEEEEEEEETT-TEEEEEEES----SS--SSEEEEEE
T ss_pred -----CCCceeEEEEEEECCEEEEEEEEC--------------CccEEEEEECCCCcEEeeecC----Cc--ceEEeccC
Confidence 222 34445556688888775432 24568899988 443333332 22 22212221
Q ss_pred ----CCeEE-EecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 306 ----KKRAL-LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 306 ----~~~iy-vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.+.++ .+.+... -..+|.||+.+++...+..
T Consensus 378 ~~~~~~~~~~~~ss~~~------------P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 378 GDFDSDELRFSYSSFTT------------PPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp S-TT-SEEEEEEEETTE------------EEEEEEEETTTTCEEEEEE
T ss_pred CCCCCCEEEEEEeCCCC------------CCEEEEEECCCCCEEEEEe
Confidence 23333 3444432 3579999999998887653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=20 Score=38.61 Aligned_cols=182 Identities=12% Similarity=0.105 Sum_probs=87.8
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcc-eeEEEEECCEEEEEcCccCCCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~-~ha~v~~~~~iyvfGG~~~s~~~ 149 (685)
-..+++.. .++.|++|-. + .++.=.=.-.+|+.+.... |.... ..++.+.++..|+.|..
T Consensus 48 l~~v~F~d--~~~g~avG~~---G-------~il~T~DgG~tW~~~~~~~-~~~~~~l~~v~~~~~~~~~~G~~------ 108 (334)
T PRK13684 48 LLDIAFTD--PNHGWLVGSN---R-------TLLETNDGGETWEERSLDL-PEENFRLISISFKGDEGWIVGQP------ 108 (334)
T ss_pred eEEEEEeC--CCcEEEEECC---C-------EEEEEcCCCCCceECccCC-cccccceeeeEEcCCcEEEeCCC------
Confidence 33344442 4667777741 1 2332222345899875432 22222 22333335566766531
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
.-+++=.-.-.+|+.+... ...+..-.....+ .+.+|+.|.. ..|++=+-.-.+|+.+...
T Consensus 109 ------g~i~~S~DgG~tW~~~~~~-~~~~~~~~~i~~~~~~~~~~~g~~----------G~i~~S~DgG~tW~~~~~~- 170 (334)
T PRK13684 109 ------SLLLHTTDGGKNWTRIPLS-EKLPGSPYLITALGPGTAEMATNV----------GAIYRTTDGGKNWEALVED- 170 (334)
T ss_pred ------ceEEEECCCCCCCeEccCC-cCCCCCceEEEEECCCcceeeecc----------ceEEEECCCCCCceeCcCC-
Confidence 1232221123489988642 1112222223333 3456665542 2344433345789988654
Q ss_pred CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEE-eCCCceeEEeecCCCCCCCcceeEEEEE-C
Q 005655 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL-DPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y-d~~t~~W~~~~~~g~~P~~R~g~s~~~~-~ 306 (685)
..-+.+.+....+..|+..|..+. ++.. +....+|+.+.. +..+.-+++++. +
T Consensus 171 -----~~g~~~~i~~~~~g~~v~~g~~G~----------------i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~ 225 (334)
T PRK13684 171 -----AAGVVRNLRRSPDGKYVAVSSRGN----------------FYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPD 225 (334)
T ss_pred -----CcceEEEEEECCCCeEEEEeCCce----------------EEEEcCCCCCeEEEeeC----CCcccceeeeEcCC
Confidence 222445555554555555444433 2222 444568998854 334445555554 6
Q ss_pred CeEEEecc
Q 005655 307 KRALLFGG 314 (685)
Q Consensus 307 ~~iyvfGG 314 (685)
+++|++|.
T Consensus 226 g~~~~vg~ 233 (334)
T PRK13684 226 GNLWMLAR 233 (334)
T ss_pred CCEEEEec
Confidence 78888874
|
|
| >PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes | Back alignment and domain information |
|---|
Probab=91.55 E-value=18 Score=37.10 Aligned_cols=228 Identities=11% Similarity=0.118 Sum_probs=96.8
Q ss_pred cceEEEEeccCCCEEEEEcCe-ecCCCceeeeccEEEEE---cCCCcEEEecCCCCCC-------CcceeEEEEECCEEE
Q 005655 70 SNCSLNINPLKETELILYGGE-FYNGNKTYVYGDLYRYD---VEKQEWKVISSPNSPP-------PRSAHQAVSWKNYLY 138 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~-~~~g~~~~~~ndv~~yd---~~~~~W~~l~s~~~P~-------~R~~ha~v~~~~~iy 138 (685)
..+++-++ +|+||.+=-. +..+.+ ......|+ ...+.|+...-+..|. .-.-|+.|.+++.-|
T Consensus 76 HCmSMGv~---~NRLfa~iEtR~~a~~k---m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~f 149 (367)
T PF12217_consen 76 HCMSMGVV---GNRLFAVIETRTVASNK---MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQF 149 (367)
T ss_dssp E-B-EEEE---TTEEEEEEEEEETTT-----EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-E
T ss_pred eeeeeeee---cceeeEEEeehhhhhhh---hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCce
Confidence 34566777 7999866543 222221 11223333 4678898543322222 345688899988778
Q ss_pred EEcCccCCCCCccccccCeEEEEECC--C--C-cEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEE
Q 005655 139 IFGGEFTSPNQERFHHYKDFWMLDLK--T--N-QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 139 vfGG~~~s~~~~~~~~~~dv~~yD~~--t--~-~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
.+|=.++.... ..+ .+..|... + . .=..++.. .-..-+-.+.-.+++.||+..--... +..-..+.+
T Consensus 150 A~GyHnGD~sP---Re~-G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~---~~~GS~L~r 221 (367)
T PF12217_consen 150 AVGYHNGDVSP---REL-GFLYFSDAFASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRGTLP---TNPGSSLHR 221 (367)
T ss_dssp EEEEEE-SSSS----EE-EEEEETTTTT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEES-T---TS---EEEE
T ss_pred eEEeccCCCCc---cee-eEEEecccccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcCcCC---CCCcceeee
Confidence 88754433222 011 12222111 0 0 11222221 12333455666789999998543221 223456777
Q ss_pred EEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC---CCcccCCCCCCceeeeEEEE-------eCCCce
Q 005655 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE---VSTDKNQSEKGIIHSDLWSL-------DPRTWE 283 (685)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~---~~~~~~~~~~~~~~~dv~~y-------d~~t~~ 283 (685)
-+..-..|..+..+. ....+..-++..++.|||||--... ......+.-.+.+ ..++.. .+....
T Consensus 222 s~d~G~~w~slrfp~----nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~y-PRtF~~k~nv~~W~~d~~e 296 (367)
T PF12217_consen 222 SDDNGQNWSSLRFPN----NVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANY-PRTFMLKVNVSDWSLDDVE 296 (367)
T ss_dssp ESSTTSS-EEEE-TT-------SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B---EEEEEEEETTT---TT--
T ss_pred ecccCCchhhccccc----cccccCCCceeeCCEEEEEeccccccccccCCCcccccccC-CceEEEEeecccCCccceE
Confidence 777788899988751 2233344456669999999953221 0000111111111 112222 355667
Q ss_pred eEEeecC---CCCCCCcceeEEEEE-CCeEE-Eeccee
Q 005655 284 WSKVKKI---GMPPGPRAGFSMCVH-KKRAL-LFGGVV 316 (685)
Q Consensus 284 W~~~~~~---g~~P~~R~g~s~~~~-~~~iy-vfGG~~ 316 (685)
|..+... |-.-..-.|.+.+++ ++.|| ||||..
T Consensus 297 w~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 297 WVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp -EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred EEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 8877653 323334455555555 67664 789864
|
This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=16 Score=44.19 Aligned_cols=93 Identities=12% Similarity=0.045 Sum_probs=45.4
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCce-EEeccCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~ 232 (685)
..+.+||+.++.....-. .... .-.+++.. ++.+++.||.+ ..|.+||+.+..- ..+..
T Consensus 555 g~v~lWd~~~~~~~~~~~--~H~~-~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~~~~~~~~~------ 616 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMK--EHEK-RVWSIDYSSADPTLLASGSDD---------GSVKLWSINQGVSIGTIKT------ 616 (793)
T ss_pred CeEEEEECCCCeEEEEec--CCCC-CEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCCcEEEEEec------
Confidence 347788887664322111 1111 11222222 45677777753 3577888865432 22211
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (685)
........+...++.+++.|+.++. +.+||+.+.
T Consensus 617 ~~~v~~v~~~~~~g~~latgs~dg~----------------I~iwD~~~~ 650 (793)
T PLN00181 617 KANICCVQFPSESGRSLAFGSADHK----------------VYYYDLRNP 650 (793)
T ss_pred CCCeEEEEEeCCCCCEEEEEeCCCe----------------EEEEECCCC
Confidence 1111111111125677888877654 778887653
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=33 Score=39.21 Aligned_cols=62 Identities=6% Similarity=-0.049 Sum_probs=34.4
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
+.+++.||.+ ..+.+||+.++.-...-. +... ....+.+ ++.+++.|+.+ ..|.
T Consensus 138 ~~iLaSgs~D-----------gtVrIWDl~tg~~~~~l~-~h~~---~V~sla~spdG~lLatgs~D---------g~Ir 193 (493)
T PTZ00421 138 MNVLASAGAD-----------MVVNVWDVERGKAVEVIK-CHSD---QITSLEWNLDGSLLCTTSKD---------KKLN 193 (493)
T ss_pred CCEEEEEeCC-----------CEEEEEECCCCeEEEEEc-CCCC---ceEEEEEECCCCEEEEecCC---------CEEE
Confidence 3577777753 347788988765322111 0111 1122223 56777777753 4578
Q ss_pred EEEcCCCc
Q 005655 213 VFDLDQFK 220 (685)
Q Consensus 213 ~yD~~t~~ 220 (685)
+||+.+..
T Consensus 194 IwD~rsg~ 201 (493)
T PTZ00421 194 IIDPRDGT 201 (493)
T ss_pred EEECCCCc
Confidence 89988764
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.69 E-value=18 Score=40.02 Aligned_cols=129 Identities=18% Similarity=0.236 Sum_probs=69.7
Q ss_pred EECCEEEEEcCccCCCCCccccccCeEEEEECCCC-cEEEcccCCCCCCCccceEEEE-C-CEEEEEccccCCCCceeee
Q 005655 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYY 208 (685)
Q Consensus 132 ~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~-~W~~~~~~g~P~~Rsgh~~v~~-~-~~lyv~GG~~~~~~~~~~~ 208 (685)
..++.|++.||++.. +-.||+.+. .|..--.-+.|.- .++.+ + ..|...||
T Consensus 163 ~~~~hivvtGsYDg~-----------vrl~DtR~~~~~v~elnhg~pVe----~vl~lpsgs~iasAgG----------- 216 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGK-----------VRLWDTRSLTSRVVELNHGCPVE----SVLALPSGSLIASAGG----------- 216 (487)
T ss_pred cCCCeEEEecCCCce-----------EEEEEeccCCceeEEecCCCcee----eEEEcCCCCEEEEcCC-----------
Confidence 346889999998653 556777666 4543222122221 12333 3 34555566
Q ss_pred ceEEEEEcCCCceEEeccCCCCCCCCCccce-----eEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc
Q 005655 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF-----QFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (685)
Q Consensus 209 ~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~-----s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (685)
|.+-++|+.+.. +.+..+..| ++... ++.-.+-||.+.. +-+|| +.
T Consensus 217 n~vkVWDl~~G~----------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~----------------VKVfd--~t 268 (487)
T KOG0310|consen 217 NSVKVWDLTTGG----------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH----------------VKVFD--TT 268 (487)
T ss_pred CeEEEEEecCCc----------eehhhhhcccceEEEEEeecCCceEeecccccc----------------eEEEE--cc
Confidence 567777765432 222222222 11222 5577788888765 66787 33
Q ss_pred eeEEeecCCCCCCCcceeEEEEE-CCeEEEecceec
Q 005655 283 EWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (685)
Q Consensus 283 ~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~ 317 (685)
.|..+..... |.|- .++++- +++.+++|+.++
T Consensus 269 ~~Kvv~s~~~-~~pv--Lsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 269 NYKVVHSWKY-PGPV--LSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred ceEEEEeeec-ccce--eeEEecCCCceEEEecccc
Confidence 4555554432 3332 344443 788889998765
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=90.65 E-value=21 Score=41.13 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=64.7
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCC--C-C---CCCccceEEEECCEEEEEccccC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG--C-P---SPRSGHRMVLYKHKIIVFGGFYD 200 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g--~-P---~~Rsgh~~v~~~~~lyv~GG~~~ 200 (685)
+-+++++.||+.... +.++.+|..|++ |+.-.... . + ........++.+++||+...
T Consensus 64 tPvv~~g~vyv~s~~------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--- 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--- 128 (527)
T ss_pred CCEEECCEEEEECCC------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC---
Confidence 445668999986542 458889988764 87643211 0 1 01112234566788876322
Q ss_pred CCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEe
Q 005655 201 TLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (685)
...|+++|..|.+ |+.-..... .......+.++.++.||+-...... .....++.||
T Consensus 129 -------dg~l~ALDa~TGk~~W~~~~~~~~---~~~~~tssP~v~~g~Vivg~~~~~~-----------~~~G~v~AlD 187 (527)
T TIGR03075 129 -------DARLVALDAKTGKVVWSKKNGDYK---AGYTITAAPLVVKGKVITGISGGEF-----------GVRGYVTAYD 187 (527)
T ss_pred -------CCEEEEEECCCCCEEeeccccccc---ccccccCCcEEECCEEEEeeccccc-----------CCCcEEEEEE
Confidence 2468999998764 765322100 0011222334557777664321110 1223477888
Q ss_pred CCCc--eeEEe
Q 005655 279 PRTW--EWSKV 287 (685)
Q Consensus 279 ~~t~--~W~~~ 287 (685)
+.+. .|+.-
T Consensus 188 ~~TG~~lW~~~ 198 (527)
T TIGR03075 188 AKTGKLVWRRY 198 (527)
T ss_pred CCCCceeEecc
Confidence 7654 46543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=34 Score=38.14 Aligned_cols=182 Identities=10% Similarity=-0.023 Sum_probs=91.1
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
..+|++|+.+++=..++.. + ....+.+.. + ..|++...... ..++|.+|+.+....++... .
T Consensus 220 ~~I~~~dl~~g~~~~l~~~--~--g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~- 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF--K--GSNSAPAWSPDGRTLAVALSRDG---------NSQIYTVNADGSGLRRLTQS--S- 283 (427)
T ss_pred cEEEEEECCCCCEEEeecC--C--CCccceEECCCCCEEEEEEccCC---------CceEEEEECCCCCcEECCCC--C-
Confidence 3689999988876666432 1 111122222 3 35554333211 25799999988877766541 1
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCC
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~ 258 (685)
.........-++..++|..-.. + ...+|.+++.+.....+.... ......++...+..|++.....+.
T Consensus 284 ~~~~~~~wSpDG~~l~f~s~~~-g-----~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g~- 351 (427)
T PRK02889 284 GIDTEPFFSPDGRSIYFTSDRG-G-----APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGGA- 351 (427)
T ss_pred CCCcCeEEcCCCCEEEEEecCC-C-----CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCCc-
Confidence 1111111222444334432111 1 247889998888777776431 111112222224455544332211
Q ss_pred CcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEE
Q 005655 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (685)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (685)
..++++|+.+.....+..... ..+.... +++.++|...... ...+++++
T Consensus 352 -------------~~I~v~d~~~g~~~~lt~~~~------~~~p~~spdg~~l~~~~~~~g-----------~~~l~~~~ 401 (427)
T PRK02889 352 -------------FKLYVQDLATGQVTALTDTTR------DESPSFAPNGRYILYATQQGG-----------RSVLAAVS 401 (427)
T ss_pred -------------EEEEEEECCCCCeEEccCCCC------ccCceECCCCCEEEEEEecCC-----------CEEEEEEE
Confidence 258899988887776643211 1111222 6676666654321 23477887
Q ss_pred CCC
Q 005655 338 LDN 340 (685)
Q Consensus 338 ~~t 340 (685)
+..
T Consensus 402 ~~g 404 (427)
T PRK02889 402 SDG 404 (427)
T ss_pred CCC
Confidence 743
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=89.68 E-value=35 Score=37.60 Aligned_cols=149 Identities=20% Similarity=0.211 Sum_probs=85.2
Q ss_pred eccEEEEEcCCC-----cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc---EEE-
Q 005655 100 YGDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQ- 170 (685)
Q Consensus 100 ~ndv~~yd~~~~-----~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~---W~~- 170 (685)
.+++|.++.... .|+.+... ..-..+.+...++.+|+.-..... ...+..+++.+.. |..
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~---~~~~~~~v~~~~~~~yi~Tn~~a~--------~~~l~~~~l~~~~~~~~~~~ 319 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPR---EDGVEYYVDHHGDRLYILTNDDAP--------NGRLVAVDLADPSPAEWWTV 319 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEES---SSS-EEEEEEETTEEEEEE-TT-T--------T-EEEEEETTSTSGGGEEEE
T ss_pred CCeEEEEeccccCCCcCCcEEEeCC---CCceEEEEEccCCEEEEeeCCCCC--------CcEEEEecccccccccceeE
Confidence 378999999875 89888542 222333444458899988763322 3568889988775 664
Q ss_pred cccCCCCCC-CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcC-CCceEEeccCCCCCCCCCccceeEE--EeCC
Q 005655 171 LNLKGCPSP-RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKWQEIKPRFGSMWPSPRSGFQFF--VYQD 246 (685)
Q Consensus 171 ~~~~g~P~~-Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~~W~~v~~~~~~~~P~~Rs~~s~~--~~~~ 246 (685)
+.+ +.. ..--.+.+.+++|++.-=.+. ...|.+|++. +..-..++.+ ..-.-.++. ...+
T Consensus 320 l~~---~~~~~~l~~~~~~~~~Lvl~~~~~~-------~~~l~v~~~~~~~~~~~~~~p------~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 320 LIP---EDEDVSLEDVSLFKDYLVLSYRENG-------SSRLRVYDLDDGKESREIPLP------EAGSVSGVSGDFDSD 383 (414)
T ss_dssp EE-----SSSEEEEEEEEETTEEEEEEEETT-------EEEEEEEETT-TEEEEEEESS------SSSEEEEEES-TT-S
T ss_pred EcC---CCCceeEEEEEEECCEEEEEEEECC-------ccEEEEEECCCCcEEeeecCC------cceEEeccCCCCCCC
Confidence 333 223 244455566889888754322 5688999998 3333333332 111101111 1133
Q ss_pred E-EEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 247 E-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 247 ~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
. .|.+.++. .-..+|.||+.+++.+.++.
T Consensus 384 ~~~~~~ss~~--------------~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 384 ELRFSYSSFT--------------TPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EEEEEEEETT--------------EEEEEEEEETTTTCEEEEEE
T ss_pred EEEEEEeCCC--------------CCCEEEEEECCCCCEEEEEe
Confidence 3 44444443 33579999999998887753
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.44 E-value=23 Score=36.05 Aligned_cols=145 Identities=21% Similarity=0.269 Sum_probs=81.2
Q ss_pred CCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC-CEEEEEcCc
Q 005655 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGE 143 (685)
Q Consensus 65 ~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyvfGG~ 143 (685)
.|.|-.|. +.+.|. .|.|++.||. ..+|+.|..+++.+..--+. .-+-|+++.-+ +.-++.|++
T Consensus 112 ~evPeINa-m~ldP~-enSi~~AgGD----------~~~y~~dlE~G~i~r~~rGH---tDYvH~vv~R~~~~qilsG~E 176 (325)
T KOG0649|consen 112 VEVPEINA-MWLDPS-ENSILFAGGD----------GVIYQVDLEDGRIQREYRGH---TDYVHSVVGRNANGQILSGAE 176 (325)
T ss_pred ccCCccce-eEeccC-CCcEEEecCC----------eEEEEEEecCCEEEEEEcCC---cceeeeeeecccCcceeecCC
Confidence 34455554 566665 4889999983 25899999999887654332 34556666543 344567777
Q ss_pred cCCCCCccccccCeEEEEECCCCcEEEc-ccCCC---CCCCccc--eEEEECCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 144 FTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGC---PSPRSGH--RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 144 ~~s~~~~~~~~~~dv~~yD~~t~~W~~~-~~~g~---P~~Rsgh--~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
++. +-++|+.|.+-.++ .+... -.|..+- .+...+.--.|.||- ..+-.|++.
T Consensus 177 DGt-----------vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG----------p~lslwhLr 235 (325)
T KOG0649|consen 177 DGT-----------VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG----------PKLSLWHLR 235 (325)
T ss_pred Ccc-----------EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC----------CceeEEecc
Confidence 553 66788888876543 22111 2222333 444455555566662 123444555
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEe
Q 005655 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (685)
Q Consensus 218 t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~G 252 (685)
+.+-+.+- |.|-.-|-+..+++.|++.|
T Consensus 236 sse~t~vf-------pipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 236 SSESTCVF-------PIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred CCCceEEE-------ecccceeEeeeecceEEEec
Confidence 44444443 33333444555566666666
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=89.34 E-value=25 Score=36.31 Aligned_cols=191 Identities=18% Similarity=0.224 Sum_probs=98.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
.+++|++.|. .+..-..+..+..| ...+.+...-. +|-+-.|.+.|+++|.+|-.-. -.+.+.+
T Consensus 30 ~~~iy~~~~~--~~~~v~ey~~~~~f-~~~~~~~~~~~--Lp~~~~GtG~vVYngslYY~~~-----------~s~~Ivk 93 (250)
T PF02191_consen 30 SEKIYVTSGF--SGNTVYEYRNYEDF-LRNGRSSRTYK--LPYPWQGTGHVVYNGSLYYNKY-----------NSRNIVK 93 (250)
T ss_pred CCCEEEECcc--CCCEEEEEcCHhHH-hhcCCCceEEE--EeceeccCCeEEECCcEEEEec-----------CCceEEE
Confidence 4789999884 22222223333333 11222221111 2445556667778888776533 2478999
Q ss_pred EECCCCcEE---EcccCCC----CCCCcc---ceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC----CceEEecc
Q 005655 161 LDLKTNQWE---QLNLKGC----PSPRSG---HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ----FKWQEIKP 226 (685)
Q Consensus 161 yD~~t~~W~---~~~~~g~----P~~Rsg---h~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t----~~W~~v~~ 226 (685)
||+.++.-. .++..+. |-...+ .-.++-.+-|+|+-....... .-.|-.+|+.+ .+|..-
T Consensus 94 ydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g----~ivvskld~~tL~v~~tw~T~-- 167 (250)
T PF02191_consen 94 YDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG----NIVVSKLDPETLSVEQTWNTS-- 167 (250)
T ss_pred EECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC----cEEEEeeCcccCceEEEEEec--
Confidence 999998654 4433211 111112 222334566777654433211 12344556654 346532
Q ss_pred CCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-
Q 005655 227 RFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (685)
Q Consensus 227 ~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~- 305 (685)
. +.+..+.++++ -|.||++-..... ...=.+.||+.+++=..+.- ..+.+-..++++-+
T Consensus 168 ~-----~k~~~~naFmv-CGvLY~~~s~~~~------------~~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YN 227 (250)
T PF02191_consen 168 Y-----PKRSAGNAFMV-CGVLYATDSYDTR------------DTEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYN 227 (250)
T ss_pred c-----CchhhcceeeE-eeEEEEEEECCCC------------CcEEEEEEECCCCceeceee--eeccccCceEeeeEC
Confidence 1 44455555444 4678888766533 12336789998776554432 12334445566655
Q ss_pred --CCeEEEec
Q 005655 306 --KKRALLFG 313 (685)
Q Consensus 306 --~~~iyvfG 313 (685)
+.+||++-
T Consensus 228 P~dk~LY~wd 237 (250)
T PF02191_consen 228 PRDKKLYAWD 237 (250)
T ss_pred CCCCeEEEEE
Confidence 57788875
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=89.10 E-value=22 Score=38.38 Aligned_cols=173 Identities=18% Similarity=0.225 Sum_probs=88.5
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCc--EEEecCCCCC---CCcceeEEEEE-CCEEEEEcC
Q 005655 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSP---PPRSAHQAVSW-KNYLYIFGG 142 (685)
Q Consensus 69 R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P---~~R~~ha~v~~-~~~iyvfGG 142 (685)
-.-|++.+.|. ++.||+..= | .+.|++|+..... .........| .|| |.+..- +..+||..-
T Consensus 144 ~h~H~v~~~pd-g~~v~v~dl----G-----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 144 PHPHQVVFSPD-GRFVYVPDL----G-----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNE 211 (345)
T ss_dssp TCEEEEEE-TT-SSEEEEEET----T-----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEET
T ss_pred ccceeEEECCC-CCEEEEEec----C-----CCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEecC
Confidence 34577888873 356776531 1 2468888887765 5432211111 233 333332 368999875
Q ss_pred ccCCCCCccccccCeEEEEECC--CCcEEEcccCC-CCC---CC-ccceEEEE--CCEEEEEccccCCCCceeeeceEEE
Q 005655 143 EFTSPNQERFHHYKDFWMLDLK--TNQWEQLNLKG-CPS---PR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~--t~~W~~~~~~g-~P~---~R-sgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
. .+.+.+|+.. +..|+.+.... +|. .. ..+.+++. +++||+--.. .+.|.+
T Consensus 212 ~-----------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~---------~~sI~v 271 (345)
T PF10282_consen 212 L-----------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG---------SNSISV 271 (345)
T ss_dssp T-----------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT---------TTEEEE
T ss_pred C-----------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc---------CCEEEE
Confidence 3 2445555554 66666544311 222 22 22333333 5578885332 467888
Q ss_pred EEc--CCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 214 FDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 214 yD~--~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
|++ .+...+.+...+.+ ...||. +.+...+..||+.+..+.. -.+|..|..+..+..+..
T Consensus 272 f~~d~~~g~l~~~~~~~~~-G~~Pr~-~~~s~~g~~l~Va~~~s~~--------------v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVPTG-GKFPRH-FAFSPDGRYLYVANQDSNT--------------VSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEECTTTTTEEEEEEEEES-SSSEEE-EEE-TTSSEEEEEETTTTE--------------EEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCceEEEEEEeCC-CCCccE-EEEeCCCCEEEEEecCCCe--------------EEEEEEeCCCCcEEEecc
Confidence 887 44566665544211 022332 2333346667765544332 235566778889988864
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=89.09 E-value=35 Score=38.07 Aligned_cols=153 Identities=11% Similarity=0.042 Sum_probs=85.3
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEECC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
.++|++|+.++.=+.+... + .........-++ +|++.-...+ ..++|.+|+.+..++++...+ .
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~--~-g~~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~dl~~g~~~~LT~~~-----~ 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS--Q-GMLVVSDVSKDGSKLLLTMAPKG-------QPDIYLYDTNTKTLTQITNYP-----G 277 (419)
T ss_pred CEEEEEECCCCcEEEEecC--C-CcEEeeEECCCCCEEEEEEccCC-------CcEEEEEECCCCcEEEcccCC-----C
Confidence 4799999998877776541 1 111111122244 5544432211 358999999999999887652 1
Q ss_pred CccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecc
Q 005655 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (685)
Q Consensus 235 ~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG 314 (685)
.-........+..||+.-...+ ..++|++|+.+...+++...+. ..... .-+++.++|-.
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g--------------~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~-SPDG~~Ia~~~ 337 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG--------------YPNIFMKKLNSGSVEQVVFHGK-----NNSSV-STYKNYIVYSS 337 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEeCccCCC-----cCceE-CCCCCEEEEEE
Confidence 1112233333566777654321 2469999999888877754322 11211 22444444433
Q ss_pred eecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
...... .+....+|+++|+.+..+..|..
T Consensus 338 ~~~~~~-----~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 338 RETNNE-----FGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred cCCCcc-----cCCCCcEEEEEECCCCCeEECCC
Confidence 221100 01113679999999998887765
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=88.74 E-value=44 Score=37.23 Aligned_cols=159 Identities=9% Similarity=0.023 Sum_probs=77.9
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.+|++|+.++.-+.+.... . ...+.+.. ++..++++..... .-++|.+|+.++....+... ..
T Consensus 229 ~i~i~dl~tg~~~~l~~~~--g--~~~~~~wSPDG~~La~~~~~~g--------~~~Iy~~d~~~~~~~~lt~~--~~-- 292 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFR--G--HNGAPAFSPDGSRLAFASSKDG--------VLNIYVMGANGGTPSQLTSG--AG-- 292 (429)
T ss_pred EEEEEeCCCCceEEEecCC--C--ccCceeECCCCCEEEEEEecCC--------cEEEEEEECCCCCeEeeccC--CC--
Confidence 5899999887766665421 1 11222222 4444444321111 13699999988887776541 11
Q ss_pred ccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCC
Q 005655 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (685)
Q Consensus 181 sgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~ 258 (685)
......| ++..++|...... ...||.++.....-..+.. .. +.......+..|++.++
T Consensus 293 -~~~~~~wSpDG~~i~f~s~~~g------~~~I~~~~~~~~~~~~l~~-------~~-~~~~~SpDG~~ia~~~~----- 352 (429)
T PRK01742 293 -NNTEPSWSPDGQSILFTSDRSG------SPQVYRMSASGGGASLVGG-------RG-YSAQISADGKTLVMING----- 352 (429)
T ss_pred -CcCCEEECCCCCEEEEEECCCC------CceEEEEECCCCCeEEecC-------CC-CCccCCCCCCEEEEEcC-----
Confidence 1222333 4443344321111 2467888776554333311 11 11222222445555433
Q ss_pred CcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecce
Q 005655 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (685)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~ 315 (685)
+.++.+|+.+..+..+.... . ..+..+. +++++++++.
T Consensus 353 -------------~~i~~~Dl~~g~~~~lt~~~-----~-~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 353 -------------DNVVKQDLTSGSTEVLSSTF-----L-DESPSISPNGIMIIYSST 391 (429)
T ss_pred -------------CCEEEEECCCCCeEEecCCC-----C-CCCceECCCCCEEEEEEc
Confidence 12677898888887664321 1 1222222 6777777764
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=88.60 E-value=40 Score=38.54 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=45.3
Q ss_pred cEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEE-EcccCCCCC
Q 005655 102 DLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-QLNLKGCPS 178 (685)
Q Consensus 102 dv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~-~~~~~g~P~ 178 (685)
.+.+||+.+.+-. .+... ...-.+++.. ++.+++.|+.+ ..+.+||+.++.-. .+.. ...
T Consensus 149 tVrIWDl~tg~~~~~l~~h----~~~V~sla~spdG~lLatgs~D-----------g~IrIwD~rsg~~v~tl~~--H~~ 211 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCH----SDQITSLEWNLDGSLLCTTSKD-----------KKLNIIDPRDGTIVSSVEA--HAS 211 (493)
T ss_pred EEEEEECCCCeEEEEEcCC----CCceEEEEEECCCCEEEEecCC-----------CEEEEEECCCCcEEEEEec--CCC
Confidence 5778888776433 22111 1111222222 56677777753 34778999876522 1111 111
Q ss_pred CCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 179 ~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.+.. .++.. ++..++.+|+.... -..|.+||+.+.
T Consensus 212 ~~~~-~~~w~~~~~~ivt~G~s~s~-----Dr~VklWDlr~~ 247 (493)
T PTZ00421 212 AKSQ-RCLWAKRKDLIITLGCSKSQ-----QRQIMLWDTRKM 247 (493)
T ss_pred Ccce-EEEEcCCCCeEEEEecCCCC-----CCeEEEEeCCCC
Confidence 1111 12222 33444555543211 356888898654
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=88.53 E-value=12 Score=38.78 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=94.4
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (685)
++||++.|.... ....+..+..| ...+.+...-. +|.+-.|.+.+++++.||..-.. .+.|..|
T Consensus 31 ~~iy~~~~~~~~----~v~ey~~~~~f-~~~~~~~~~~~--Lp~~~~GtG~vVYngslYY~~~~---------s~~Ivky 94 (250)
T PF02191_consen 31 EKIYVTSGFSGN----TVYEYRNYEDF-LRNGRSSRTYK--LPYPWQGTGHVVYNGSLYYNKYN---------SRNIVKY 94 (250)
T ss_pred CCEEEECccCCC----EEEEEcCHhHH-hhcCCCceEEE--EeceeccCCeEEECCcEEEEecC---------CceEEEE
Confidence 678888886443 12223333333 12223332222 47777888889999999986542 5789999
Q ss_pred EcCCCceE-EeccCCCCC---CCCCccc---eeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc----e
Q 005655 215 DLDQFKWQ-EIKPRFGSM---WPSPRSG---FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW----E 283 (685)
Q Consensus 215 D~~t~~W~-~v~~~~~~~---~P~~Rs~---~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~----~ 283 (685)
|+.+..-. ....+..+- .|....+ .-+++-.+.|+|+=..... .+. --+-.+||.+. +
T Consensus 95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~---------~g~--ivvskld~~tL~v~~t 163 (250)
T PF02191_consen 95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN---------NGN--IVVSKLDPETLSVEQT 163 (250)
T ss_pred ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC---------CCc--EEEEeeCcccCceEEE
Confidence 99988766 332221111 1222222 3345557788888554432 111 12445666543 5
Q ss_pred eEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 284 WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 284 W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
|..- .+.+.+ ..+.++-|.||++....... ..-.++||+.+++=..+.+
T Consensus 164 w~T~-----~~k~~~-~naFmvCGvLY~~~s~~~~~----------~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 164 WNTS-----YPKRSA-GNAFMVCGVLYATDSYDTRD----------TEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred EEec-----cCchhh-cceeeEeeEEEEEEECCCCC----------cEEEEEEECCCCceeceee
Confidence 5532 122222 23556678888887664311 3347899999887665555
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=88.33 E-value=29 Score=39.47 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=65.1
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCC-C-CCC-CccceEEEEC-CEEEEEccccCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG-C-PSP-RSGHRMVLYK-HKIIVFGGFYDTL 202 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g-~-P~~-Rsgh~~v~~~-~~lyv~GG~~~~~ 202 (685)
+-++.++.||+.... ..++.+|..|++ |+.-.... . ..+ -.....++.+ +.||+...
T Consensus 56 sPvv~~g~vy~~~~~------------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~----- 118 (488)
T cd00216 56 TPLVVDGDMYFTTSH------------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF----- 118 (488)
T ss_pred CCEEECCEEEEeCCC------------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-----
Confidence 346678999986542 458888988764 87643211 0 001 1112234456 77776432
Q ss_pred CceeeeceEEEEEcCCC--ceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC
Q 005655 203 REVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (685)
Q Consensus 203 ~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (685)
...|++||..+. .|+.-..... .+......+.++.++.+| +|....... .......+++||..
T Consensus 119 -----~g~v~AlD~~TG~~~W~~~~~~~~--~~~~~i~ssP~v~~~~v~-vg~~~~~~~-------~~~~~g~v~alD~~ 183 (488)
T cd00216 119 -----DGRLVALDAETGKQVWKFGNNDQV--PPGYTMTGAPTIVKKLVI-IGSSGAEFF-------ACGVRGALRAYDVE 183 (488)
T ss_pred -----CCeEEEEECCCCCEeeeecCCCCc--CcceEecCCCEEECCEEE-Eeccccccc-------cCCCCcEEEEEECC
Confidence 246889998764 4775433210 000111223344465555 443322100 00123458899986
Q ss_pred Cc--eeEEee
Q 005655 281 TW--EWSKVK 288 (685)
Q Consensus 281 t~--~W~~~~ 288 (685)
+. .|..-.
T Consensus 184 TG~~~W~~~~ 193 (488)
T cd00216 184 TGKLLWRFYT 193 (488)
T ss_pred CCceeeEeec
Confidence 54 687643
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=88.32 E-value=41 Score=36.30 Aligned_cols=194 Identities=15% Similarity=0.117 Sum_probs=91.9
Q ss_pred EEEEEcCCCcEEEecCCCCCCCcceeEEEEE---CCEEEEEcCccCCCCCccccccCeEEEE--ECCCCcEEEcccCCCC
Q 005655 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWML--DLKTNQWEQLNLKGCP 177 (685)
Q Consensus 103 v~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyvfGG~~~s~~~~~~~~~~dv~~y--D~~t~~W~~~~~~g~P 177 (685)
++.||..+.++..+.... .-...+..++ ++.||+....... ...+..| +..+++.+.+.. .+
T Consensus 17 ~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~~~~~~~LY~~~e~~~~--------~g~v~~~~i~~~~g~L~~~~~--~~ 83 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVA---EGENPSWLAVSPDGRRLYVVNEGSGD--------SGGVSSYRIDPDTGTLTLLNS--VP 83 (345)
T ss_dssp EEEEETTTTEEEEEEEEE---ESSSECCEEE-TTSSEEEEEETTSST--------TTEEEEEEEETTTTEEEEEEE--EE
T ss_pred EEEEcCCCCCceEeeeec---CCCCCceEEEEeCCCEEEEEEccccC--------CCCEEEEEECCCcceeEEeee--ec
Confidence 455666889998665311 1111222222 5789988654311 1334444 455568887765 33
Q ss_pred CCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCC-ceEEec-------cCCCCCCCCCccceeEEEe--
Q 005655 178 SPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIK-------PRFGSMWPSPRSGFQFFVY-- 244 (685)
Q Consensus 178 ~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~-------~~~~~~~P~~Rs~~s~~~~-- 244 (685)
....+.+.+.+ +.+||+. -+. ...+.+|++... .-.... ..+.......-.-|++...
T Consensus 84 ~~g~~p~~i~~~~~g~~l~va-ny~--------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd 154 (345)
T PF10282_consen 84 SGGSSPCHIAVDPDGRFLYVA-NYG--------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD 154 (345)
T ss_dssp ESSSCEEEEEECTTSSEEEEE-ETT--------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred cCCCCcEEEEEecCCCEEEEE-Ecc--------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence 22333333333 4456653 221 245777777653 211110 0000000122234555555
Q ss_pred CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce--eEEeecCCCCCCCcceeEEEEE--CCeEEEecceecccC
Q 005655 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEM 320 (685)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~~~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~ 320 (685)
+..+|+.. .. .+.+++|+..... ........ .|..-.-..++++ +..+||..-.
T Consensus 155 g~~v~v~d-lG---------------~D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~----- 212 (345)
T PF10282_consen 155 GRFVYVPD-LG---------------ADRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNEL----- 212 (345)
T ss_dssp SSEEEEEE-TT---------------TTEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETT-----
T ss_pred CCEEEEEe-cC---------------CCEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCC-----
Confidence 44566653 11 2347777765544 55533321 1222222345555 4578888654
Q ss_pred CccccccccCCcEEEEECC--CCcEEEEEec
Q 005655 321 KGDVIMSLFLNELYGFQLD--NHRWYPLELR 349 (685)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~--t~~W~~l~~~ 349 (685)
.+.|.+|++. +..|..+...
T Consensus 213 ---------s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 213 ---------SNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp ---------TTEEEEEEEETTTTEEEEEEEE
T ss_pred ---------CCcEEEEeecccCCceeEEEEe
Confidence 3556666665 7777766653
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=87.85 E-value=15 Score=38.12 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=79.9
Q ss_pred EEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC-Ccc
Q 005655 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-RSG 182 (685)
Q Consensus 105 ~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~-Rsg 182 (685)
++||.++.-+..+.+ ..-.-+.+|+. ++.+|+..= .-|-+-+.|+.+..=+.++. |.+ ..+
T Consensus 172 rLdPa~~~i~vfpaP---qG~gpyGi~atpdGsvwyasl-----------agnaiaridp~~~~aev~p~---P~~~~~g 234 (353)
T COG4257 172 RLDPARNVISVFPAP---QGGGPYGICATPDGSVWYASL-----------AGNAIARIDPFAGHAEVVPQ---PNALKAG 234 (353)
T ss_pred ecCcccCceeeeccC---CCCCCcceEECCCCcEEEEec-----------cccceEEcccccCCcceecC---CCccccc
Confidence 567777666655543 23333556665 677776521 12457788888876555554 444 222
Q ss_pred ceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCC
Q 005655 183 HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVS 259 (685)
Q Consensus 183 h~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~ 259 (685)
.+-+.. -+.+++--- -...++.||+.+..|..-+.+. ..+|-. ++-+. .+.+++.---
T Consensus 235 sRriwsdpig~~wittw---------g~g~l~rfdPs~~sW~eypLPg----s~arpy-s~rVD~~grVW~sea~----- 295 (353)
T COG4257 235 SRRIWSDPIGRAWITTW---------GTGSLHRFDPSVTSWIEYPLPG----SKARPY-SMRVDRHGRVWLSEAD----- 295 (353)
T ss_pred ccccccCccCcEEEecc---------CCceeeEeCcccccceeeeCCC----CCCCcc-eeeeccCCcEEeeccc-----
Confidence 222222 345666411 1357999999999999987762 233333 33333 5666664222
Q ss_pred cccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
.+.+.+||+.+.+.+.+.
T Consensus 296 -----------agai~rfdpeta~ftv~p 313 (353)
T COG4257 296 -----------AGAIGRFDPETARFTVLP 313 (353)
T ss_pred -----------cCceeecCcccceEEEec
Confidence 234789999999998874
|
|
| >PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=87.37 E-value=0.15 Score=55.34 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=6.2
Q ss_pred eeeeecccc
Q 005655 479 EITLDDLYS 487 (685)
Q Consensus 479 e~tl~D~y~ 487 (685)
-+|+||+-.
T Consensus 25 KlTi~Dtlk 33 (458)
T PF10446_consen 25 KLTINDTLK 33 (458)
T ss_pred cccHHHHHH
Confidence 378888744
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=87.17 E-value=12 Score=34.07 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=59.8
Q ss_pred EEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCC
Q 005655 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (685)
Q Consensus 186 v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (685)
+.++|-||-..-.. ....+.|.+||+.+.+|+.+..+ ...........++.++|+|.++.-....
T Consensus 2 icinGvly~~a~~~-----~~~~~~IvsFDv~~E~f~~i~~P--~~~~~~~~~~~L~~~~G~L~~v~~~~~~-------- 66 (129)
T PF08268_consen 2 ICINGVLYWLAWSE-----DSDNNVIVSFDVRSEKFRFIKLP--EDPYSSDCSSTLIEYKGKLALVSYNDQG-------- 66 (129)
T ss_pred EEECcEEEeEEEEC-----CCCCcEEEEEEcCCceEEEEEee--eeeccccCccEEEEeCCeEEEEEecCCC--------
Confidence 45688888776651 12357899999999999998875 1113455666777779998887654432
Q ss_pred CCCceeeeEEEEe-CCCceeEEeec
Q 005655 266 EKGIIHSDLWSLD-PRTWEWSKVKK 289 (685)
Q Consensus 266 ~~~~~~~dv~~yd-~~t~~W~~~~~ 289 (685)
....-++|++. ..+..|++...
T Consensus 67 --~~~~~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 67 --EPDSIDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred --CcceEEEEEeeccccceEEEEEE
Confidence 02345799994 66789998754
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=86.84 E-value=49 Score=36.89 Aligned_cols=139 Identities=10% Similarity=0.102 Sum_probs=69.9
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (685)
..+|++|+.++.-..+.. .+. ... ...| ++..++++...+. ..++|.+|+.+.....+... +
T Consensus 228 ~~i~i~dl~tg~~~~l~~--~~g-~~~--~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~~~~lt~~-----~ 291 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS--FRG-HNG--APAFSPDGSRLAFASSKDG------VLNIYVMGANGGTPSQLTSG-----A 291 (429)
T ss_pred cEEEEEeCCCCceEEEec--CCC-ccC--ceeECCCCCEEEEEEecCC------cEEEEEEECCCCCeEeeccC-----C
Confidence 468999998887666644 221 111 2233 4544444332111 13689999988877766543 1
Q ss_pred CCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEe
Q 005655 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (685)
Q Consensus 234 ~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvf 312 (685)
..-...+....+..|++.....+. ..+|.++..+..-..+.. .. +...+. +++.+++
T Consensus 292 ~~~~~~~wSpDG~~i~f~s~~~g~--------------~~I~~~~~~~~~~~~l~~-----~~---~~~~~SpDG~~ia~ 349 (429)
T PRK01742 292 GNNTEPSWSPDGQSILFTSDRSGS--------------PQVYRMSASGGGASLVGG-----RG---YSAQISADGKTLVM 349 (429)
T ss_pred CCcCCEEECCCCCEEEEEECCCCC--------------ceEEEEECCCCCeEEecC-----CC---CCccCCCCCCEEEE
Confidence 111222222223445544332221 257888776553333311 11 112222 4444444
Q ss_pred cceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
.+. +.++.+|+.+..+..+.
T Consensus 350 ~~~---------------~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 350 ING---------------DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred EcC---------------CCEEEEECCCCCeEEec
Confidence 432 24788999988887654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=86.75 E-value=58 Score=39.51 Aligned_cols=89 Identities=11% Similarity=0.134 Sum_probs=44.6
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEE-EcccCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-QLNLKGCPS 178 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~-~~~~~g~P~ 178 (685)
.+.+||..+++....-.. ....-.+++.. ++.+++.||.. ..+.+||+.+..-. .+..
T Consensus 556 ~v~lWd~~~~~~~~~~~~---H~~~V~~l~~~p~~~~~L~Sgs~D-----------g~v~iWd~~~~~~~~~~~~----- 616 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKE---HEKRVWSIDYSSADPTLLASGSDD-----------GSVKLWSINQGVSIGTIKT----- 616 (793)
T ss_pred eEEEEECCCCeEEEEecC---CCCCEEEEEEcCCCCCEEEEEcCC-----------CEEEEEECCCCcEEEEEec-----
Confidence 466677766543321111 11112233333 35677777753 34778888765322 2211
Q ss_pred CCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 179 PRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 179 ~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.....++.+ ++.++++|+.+ ..|.+||+.+.
T Consensus 617 -~~~v~~v~~~~~~g~~latgs~d---------g~I~iwD~~~~ 650 (793)
T PLN00181 617 -KANICCVQFPSESGRSLAFGSAD---------HKVYYYDLRNP 650 (793)
T ss_pred -CCCeEEEEEeCCCCCEEEEEeCC---------CeEEEEECCCC
Confidence 111222222 46677777743 46889998754
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=86.15 E-value=60 Score=35.97 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=27.4
Q ss_pred CCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEc
Q 005655 110 KQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL 171 (685)
Q Consensus 110 ~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~ 171 (685)
-.+|..++.+. ..+-..+.++++ ++.+|++|.. ..+++-+-.-.+|+.+
T Consensus 165 G~tW~~~~~~~-~~p~~~~~i~~~~~~~~~ivg~~------------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 165 GETWERIPLSP-KLPGEPVLIKATGPKSAEMVTDE------------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred CCCceECcccc-CCCCCceEEEEECCCceEEEecc------------ceEEEECCCCCCceEc
Confidence 46899876532 112223444445 3567787742 2355554455689987
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=84.74 E-value=1e+02 Score=37.30 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=15.3
Q ss_pred CceeeeEEEEeCCCc--eeEEee
Q 005655 268 GIIHSDLWSLDPRTW--EWSKVK 288 (685)
Q Consensus 268 ~~~~~dv~~yd~~t~--~W~~~~ 288 (685)
..+.+.+..+|+.|. .|..-.
T Consensus 410 n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 410 EKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ccccceEEEEeCCCCceEEEecc
Confidence 356788999998765 687654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=84.16 E-value=57 Score=34.03 Aligned_cols=187 Identities=15% Similarity=0.104 Sum_probs=102.2
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC--CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~--~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
-+-++++++..-+..+-+. -.+-.+.-.++++ +.||..|-.. .+. ++|+.++.-+..+. |.+
T Consensus 125 aI~R~dpkt~evt~f~lp~-~~a~~nlet~vfD~~G~lWFt~q~G---------~yG---rLdPa~~~i~vfpa---PqG 188 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPL-EHADANLETAVFDPWGNLWFTGQIG---------AYG---RLDPARNVISVFPA---PQG 188 (353)
T ss_pred eeEEecCcccceEEeeccc-ccCCCcccceeeCCCccEEEeeccc---------cce---ecCcccCceeeecc---CCC
Confidence 5778999888777665431 1122233333443 6777766421 122 67887776555443 222
Q ss_pred CccceEEE-ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcc-ceeEE-E-eCCEEEEEeccc
Q 005655 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS-GFQFF-V-YQDEVFLYGGYS 255 (685)
Q Consensus 180 Rsgh~~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs-~~s~~-~-~~~~Iyv~GG~~ 255 (685)
-.-.++|+ -++.+|+--= +-|-+-..|+.+..=..++.+ .+.. +.--+ + -.+.+++.--.
T Consensus 189 ~gpyGi~atpdGsvwyasl---------agnaiaridp~~~~aev~p~P------~~~~~gsRriwsdpig~~wittwg- 252 (353)
T COG4257 189 GGPYGICATPDGSVWYASL---------AGNAIARIDPFAGHAEVVPQP------NALKAGSRRIWSDPIGRAWITTWG- 252 (353)
T ss_pred CCCcceEECCCCcEEEEec---------cccceEEcccccCCcceecCC------CcccccccccccCccCcEEEeccC-
Confidence 22233433 3666666411 124456667776644444432 2211 11111 1 14556665221
Q ss_pred CCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEE
Q 005655 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (685)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (685)
...+++|||.+..|..-+-.+.. +| ..+|-+- .+++++--- -.+.|.
T Consensus 253 ---------------~g~l~rfdPs~~sW~eypLPgs~--ar-pys~rVD~~grVW~sea--------------~agai~ 300 (353)
T COG4257 253 ---------------TGSLHRFDPSVTSWIEYPLPGSK--AR-PYSMRVDRHGRVWLSEA--------------DAGAIG 300 (353)
T ss_pred ---------------CceeeEeCcccccceeeeCCCCC--CC-cceeeeccCCcEEeecc--------------ccCcee
Confidence 23488999999999988654432 23 3344443 566665321 146699
Q ss_pred EEECCCCcEEEEEecCCC
Q 005655 335 GFQLDNHRWYPLELRKEK 352 (685)
Q Consensus 335 ~yd~~t~~W~~l~~~~~~ 352 (685)
+||+++.+++.++...+.
T Consensus 301 rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 301 RFDPETARFTVLPIPRPN 318 (353)
T ss_pred ecCcccceEEEecCCCCC
Confidence 999999999999885443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=84.02 E-value=75 Score=35.24 Aligned_cols=121 Identities=14% Similarity=0.118 Sum_probs=60.3
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCC--CCC-cceeEEEEECCEEEEEcCccCC
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS--PPP-RSAHQAVSWKNYLYIFGGEFTS 146 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~--P~~-R~~ha~v~~~~~iyvfGG~~~s 146 (685)
.-..+.+.|...++.+++|-. + -+..-+=.-.+|.....+.. +.. ....+++..++.+|++|-.
T Consensus 89 ~L~~V~F~~~d~~~GwAVG~~---G-------~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~--- 155 (398)
T PLN00033 89 VLLDIAFVPDDPTHGFLLGTR---Q-------TLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP--- 155 (398)
T ss_pred ceEEEEeccCCCCEEEEEcCC---C-------EEEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc---
Confidence 334455533224688888862 1 22222223458997543211 111 1234455557788888532
Q ss_pred CCCccccccCeEEEEECCCCcEEEcccCC-CCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
.-+++=.-.-.+|+.+.... +|.. .+..+.+ .+.+|++|.. ..+++-+-.-.+|+.+
T Consensus 156 ---------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~----------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 156 ---------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE----------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred ---------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc----------ceEEEECCCCCCceEc
Confidence 11222222346899886521 1222 3334444 4567777742 2344444445689987
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=83.45 E-value=70 Score=35.67 Aligned_cols=173 Identities=14% Similarity=0.212 Sum_probs=89.5
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..|++.++...++-.+++-. +|.....+-| ++.|+|..-+..... -...+|..+........+..-
T Consensus 106 taDly~v~~e~Ge~kRiTyf----Gr~fT~VaG~~~dg~iiV~TD~~tPF~---q~~~lYkv~~dg~~~e~LnlG----- 173 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYF----GRRFTRVAGWIPDGEIIVSTDFHTPFS---QWTELYKVNVDGIKTEPLNLG----- 173 (668)
T ss_pred cccEEEEeCCCCcEEEEEEe----ccccceeeccCCCCCEEEEeccCCCcc---cceeeeEEccCCceeeeccCC-----
Confidence 47899999999998888873 3444444444 678888776654321 012333333333222222221
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEe
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLF 312 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvf 312 (685)
-.+..+..+.++++|-.... ..-=..-+|..-..+|.=.....+++++-.+.. .-.+-+++++++|.+
T Consensus 174 -----pathiv~~dg~ivigRntyd--LP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~-----~vS~PmIV~~RvYFl 241 (668)
T COG4946 174 -----PATHIVIKDGIIVIGRNTYD--LPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDG-----NVSSPMIVGERVYFL 241 (668)
T ss_pred -----ceeeEEEeCCEEEEccCccc--CcccccccCCccceEEEEecCCcceeeeeecCC-----CcCCceEEcceEEEE
Confidence 12333445557777754332 110011122333456666666666776654311 011224456777665
Q ss_pred cceecc------c---------------------CCccccccccCCcEEEEECCCCcEEEEEecCC
Q 005655 313 GGVVDM------E---------------------MKGDVIMSLFLNELYGFQLDNHRWYPLELRKE 351 (685)
Q Consensus 313 GG~~~~------~---------------------~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~ 351 (685)
--..+. + ..+..+.-..-.++|.|||++.+-.+|....|
T Consensus 242 sD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lp 307 (668)
T COG4946 242 SDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLP 307 (668)
T ss_pred ecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCc
Confidence 322111 0 01112222334589999999999999887533
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=83.27 E-value=42 Score=36.81 Aligned_cols=211 Identities=15% Similarity=0.206 Sum_probs=96.0
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEE-EEcCccCCCCCccccccCeEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY-IFGGEFTSPNQERFHHYKDFW 159 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iy-vfGG~~~s~~~~~~~~~~dv~ 159 (685)
++.-+||+|. +++. ..+|.+|+.+.+-.+|+.... ....+..++.-+..|| +-.| ..++
T Consensus 46 dG~kllF~s~-~dg~-----~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~~~~~~~Yv~~~-------------~~l~ 105 (386)
T PF14583_consen 46 DGRKLLFASD-FDGN-----RNLYLLDLATGEITQLTDGPG-DNTFGGFLSPDDRALYYVKNG-------------RSLR 105 (386)
T ss_dssp TS-EEEEEE--TTSS------EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEETT-------------TEEE
T ss_pred CCCEEEEEec-cCCC-----cceEEEEcccCEEEECccCCC-CCccceEEecCCCeEEEEECC-------------CeEE
Confidence 5777788775 3443 478999999999999987531 2222222222245554 3333 4689
Q ss_pred EEECCCCcEEEcccCCCCCCCccceEEEEC--CEEEEEccccCC------CC---------ceeeeceEEEEEcCCCceE
Q 005655 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYK--HKIIVFGGFYDT------LR---------EVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~--~~lyv~GG~~~~------~~---------~~~~~~dv~~yD~~t~~W~ 222 (685)
.+|+.|.+=+.|-. .|..-.+....+.+ ... ++ |.... .. ..+..+.|...|+.+.+.+
T Consensus 106 ~vdL~T~e~~~vy~--~p~~~~g~gt~v~n~d~t~-~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 106 RVDLDTLEERVVYE--VPDDWKGYGTWVANSDCTK-LV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp EEETTT--EEEEEE----TTEEEEEEEEE-TTSSE-EE-EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred EEECCcCcEEEEEE--CCcccccccceeeCCCccE-EE-EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 99999887655554 34444443333332 222 11 11100 00 0224567888899998887
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEE
Q 005655 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (685)
Q Consensus 223 ~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~ 302 (685)
.|-.. ..-.....+.+.+..+++|.--..- ..+-.-||..+........+... .+.-.+||=.
T Consensus 182 ~v~~~-----~~wlgH~~fsP~dp~li~fCHEGpw----------~~Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gHEf 244 (386)
T PF14583_consen 182 VVFED-----TDWLGHVQFSPTDPTLIMFCHEGPW----------DLVDQRIWTINTDGSNVKKVHRR--MEGESVGHEF 244 (386)
T ss_dssp EEEEE-----SS-EEEEEEETTEEEEEEEEE-S-T----------TTSS-SEEEEETTS---EESS-----TTEEEEEEE
T ss_pred EEEec-----CccccCcccCCCCCCEEEEeccCCc----------ceeceEEEEEEcCCCcceeeecC--CCCccccccc
Confidence 77554 2222333445557778887432211 12334699999887776666542 2333344444
Q ss_pred EEECCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
-+.+|..+.+=+..... . -.-|..||+.|.
T Consensus 245 w~~DG~~i~y~~~~~~~-------~--~~~i~~~d~~t~ 274 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGG-------Q--DFWIAGYDPDTG 274 (386)
T ss_dssp E-TTSS-EEEEEEETTT-----------EEEEEE-TTT-
T ss_pred ccCCCCEEEEEeecCCC-------C--ceEEEeeCCCCC
Confidence 44455544443332210 0 122777888765
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.06 E-value=31 Score=39.23 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=44.9
Q ss_pred CCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecc
Q 005655 177 PSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254 (685)
Q Consensus 177 P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~ 254 (685)
-.|+.|.-|++. +--||+.|- -.+||+||+....|-..-... .+-..+.-+---++|+.+||-
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs----------g~evYRlNLEqGrfL~P~~~~-----~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS----------GSEVYRLNLEQGRFLNPFETD-----SGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred ecCcCCccccccCCCccEEEeec----------CcceEEEEccccccccccccc-----cccceeeeecCccceEEeccc
Confidence 445666666654 234665543 368999999999885432221 111111111125678999987
Q ss_pred cCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
.+. |.++||.+..
T Consensus 196 ~g~----------------VEfwDpR~ks 208 (703)
T KOG2321|consen 196 DGV----------------VEFWDPRDKS 208 (703)
T ss_pred Cce----------------EEEecchhhh
Confidence 766 7788876543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=81.78 E-value=84 Score=34.22 Aligned_cols=226 Identities=12% Similarity=0.070 Sum_probs=115.1
Q ss_pred EeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcce-----eEEEEE--CCEEEEEcCccCCC
Q 005655 76 INPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSA-----HQAVSW--KNYLYIFGGEFTSP 147 (685)
Q Consensus 76 ~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~-----ha~v~~--~~~iyvfGG~~~s~ 147 (685)
+.|. +..|||.-..+..+.+..-.+.|-+||+.+.+-. .++.+ |.||.. +.++.. +..|||+-=
T Consensus 53 ~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~n~----- 124 (352)
T TIGR02658 53 VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP--EGPRFLVGTYPWMTSLTPDNKTLLFYQF----- 124 (352)
T ss_pred ECCC-CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC--CCchhhccCccceEEECCCCCEEEEecC-----
Confidence 4543 4788888875544444444567899999998765 55554 344522 222222 346777621
Q ss_pred CCccccccCeEEEEECCCCcEEE-cccCCC----CCCCccceEEEECCEEEE----------------Ecc------ccC
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQ-LNLKGC----PSPRSGHRMVLYKHKIIV----------------FGG------FYD 200 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~-~~~~g~----P~~Rsgh~~v~~~~~lyv----------------~GG------~~~ 200 (685)
..-+.+-++|+.++.-.. ++..++ |.+...+.+.+.++.+.. |-+ ...
T Consensus 125 -----~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 125 -----SPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP 199 (352)
T ss_pred -----CCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence 123678899998887544 433222 444444433344332222 333 111
Q ss_pred -----CCC--ceeeeceEEEEEcCC------CceEEeccCCC--CCCCCCccceeEEEeCCEEEEEe--cccCCCCcccC
Q 005655 201 -----TLR--EVRYYNDLYVFDLDQ------FKWQEIKPRFG--SMWPSPRSGFQFFVYQDEVFLYG--GYSKEVSTDKN 263 (685)
Q Consensus 201 -----~~~--~~~~~~dv~~yD~~t------~~W~~v~~~~~--~~~P~~Rs~~s~~~~~~~Iyv~G--G~~~~~~~~~~ 263 (685)
.+. -..+...|+..|+.. ..|..+..... +-.|...-..++..-++.+||.. |-.+.
T Consensus 200 ~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t------ 273 (352)
T TIGR02658 200 AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT------ 273 (352)
T ss_pred ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc------
Confidence 010 011346777777432 33665544311 11122211222222378888842 22111
Q ss_pred CCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C-C-eEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K-K-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~-~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
....-+.+|++|+.+.+=...-. ..+.-+++++- + . .+|+.-+. .++|.++|+.+
T Consensus 274 ---hk~~~~~V~ViD~~t~kvi~~i~-----vG~~~~~iavS~Dgkp~lyvtn~~--------------s~~VsViD~~t 331 (352)
T TIGR02658 274 ---HKTASRFLFVVDAKTGKRLRKIE-----LGHEIDSINVSQDAKPLLYALSTG--------------DKTLYIFDAET 331 (352)
T ss_pred ---ccCCCCEEEEEECCCCeEEEEEe-----CCCceeeEEECCCCCeEEEEeCCC--------------CCcEEEEECcC
Confidence 01233579999987765444433 33444555555 3 3 56655543 46699999887
Q ss_pred Cc
Q 005655 341 HR 342 (685)
Q Consensus 341 ~~ 342 (685)
.+
T Consensus 332 ~k 333 (352)
T TIGR02658 332 GK 333 (352)
T ss_pred Ce
Confidence 63
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=81.75 E-value=26 Score=31.89 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=58.1
Q ss_pred EECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccC-CCCCCCccceEEEECCEEEEEccccCCCCceeeece
Q 005655 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYND 210 (685)
Q Consensus 132 ~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~-g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~d 210 (685)
.++|.||-..-. .. ...+-+..||+.+.+|+.+..+ ..........++.++|+|-++.-..... ...-+
T Consensus 3 cinGvly~~a~~-~~------~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~---~~~~~ 72 (129)
T PF08268_consen 3 CINGVLYWLAWS-ED------SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE---PDSID 72 (129)
T ss_pred EECcEEEeEEEE-CC------CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC---cceEE
Confidence 457777766654 11 1347799999999999988763 1234556677788899998875543221 12458
Q ss_pred EEEE-EcCCCceEEeccC
Q 005655 211 LYVF-DLDQFKWQEIKPR 227 (685)
Q Consensus 211 v~~y-D~~t~~W~~v~~~ 227 (685)
+|++ |.....|++....
T Consensus 73 iWvLeD~~k~~Wsk~~~~ 90 (129)
T PF08268_consen 73 IWVLEDYEKQEWSKKHIV 90 (129)
T ss_pred EEEeeccccceEEEEEEE
Confidence 8888 5677889987653
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.70 E-value=24 Score=39.35 Aligned_cols=51 Identities=22% Similarity=0.377 Sum_probs=35.9
Q ss_pred eEEEEEcCC----CceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 210 DLYVFDLDQ----FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 210 dv~~yD~~t----~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
.|.+||... ..|..... .|-.|-+++..+..|++-=|+++. ++.||.....
T Consensus 188 ~VtlwDv~g~sp~~~~~~~Hs-------AP~~gicfspsne~l~vsVG~Dkk----------------i~~yD~~s~~ 242 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHS-------APCRGICFSPSNEALLVSVGYDKK----------------INIYDIRSQA 242 (673)
T ss_pred eEEEEeccCCCcccchhhhcc-------CCcCcceecCCccceEEEecccce----------------EEEeeccccc
Confidence 466666653 33554443 355677888889999999999877 8899987543
|
|
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=81.23 E-value=77 Score=33.44 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=58.2
Q ss_pred eeccEEEEEcCCCcEEEe--cCCCCCCCcceeEE-EEE---CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcc
Q 005655 99 VYGDLYRYDVEKQEWKVI--SSPNSPPPRSAHQA-VSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172 (685)
Q Consensus 99 ~~ndv~~yd~~~~~W~~l--~s~~~P~~R~~ha~-v~~---~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~ 172 (685)
-|+.|+.||+.+++-+.+ .+...|..-++-.+ ..+ ++.||+.-+- + +.---+|.+|..++.=+.+.
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~D-G-------h~nLGvy~ldr~~g~~~~L~ 147 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARAD-G-------HANLGVYSLDRRTGKAEKLS 147 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecC-C-------cceeeeEEEcccCCceeecc
Confidence 467899999999873322 12222222222211 122 4677776432 1 11235999999999988887
Q ss_pred cCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 173 LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 173 ~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
.. |++ -.+.+.+..+|-+ ..- ..-.+.+.+||+.+++|
T Consensus 148 ~~--ps~---KG~~~~D~a~F~i---~~~---~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 148 SN--PSL---KGTLVHDYACFGI---NNF---HKGVSGIHCLDLISGKW 185 (339)
T ss_pred CC--CCc---CceEeeeeEEEec---ccc---ccCCceEEEEEccCCeE
Confidence 63 333 2233333333322 111 11267899999999999
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.14 E-value=30 Score=38.44 Aligned_cols=129 Identities=16% Similarity=0.226 Sum_probs=66.0
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC-cEEEecCCCCCCCcceeEEEEEC--CEEEEEcCccCCCCCccccccCe
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~-~W~~l~s~~~P~~R~~ha~v~~~--~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
+++|++.||+ +| .+-.||+.+. .|.. ..+.-.|- -.+++++ ..|...|| |.
T Consensus 165 ~~hivvtGsY--Dg-------~vrl~DtR~~~~~v~--elnhg~pV--e~vl~lpsgs~iasAgG-------------n~ 218 (487)
T KOG0310|consen 165 NDHIVVTGSY--DG-------KVRLWDTRSLTSRVV--ELNHGCPV--ESVLALPSGSLIASAGG-------------NS 218 (487)
T ss_pred CCeEEEecCC--Cc-------eEEEEEeccCCceeE--EecCCCce--eeEEEcCCCCEEEEcCC-------------Ce
Confidence 3778888883 44 4666787776 4542 22211222 1234442 45555566 45
Q ss_pred EEEEECCCCcEEEcccCCCCCCCc-cceEEE----E-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCC
Q 005655 158 FWMLDLKTNQWEQLNLKGCPSPRS-GHRMVL----Y-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (685)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rs-gh~~v~----~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (685)
+-++|+.++.= ++..+. +|-.+. . ++.-.+-||.+ ..|-+||+.+ |..+....
T Consensus 219 vkVWDl~~G~q-------ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD---------~~VKVfd~t~--~Kvv~s~~--- 277 (487)
T KOG0310|consen 219 VKVWDLTTGGQ-------LLTSMFNHNKTVTCLRLASDSTRLLSGSLD---------RHVKVFDTTN--YKVVHSWK--- 277 (487)
T ss_pred EEEEEecCCce-------ehhhhhcccceEEEEEeecCCceEeecccc---------cceEEEEccc--eEEEEeee---
Confidence 66677654431 222333 222211 1 34555666754 3577888443 45554442
Q ss_pred CCCCccceeEEEeCCEEEEEecccCC
Q 005655 232 WPSPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 232 ~P~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
.|.|....++.. +++-.++|..++.
T Consensus 278 ~~~pvLsiavs~-dd~t~viGmsnGl 302 (487)
T KOG0310|consen 278 YPGPVLSIAVSP-DDQTVVIGMSNGL 302 (487)
T ss_pred cccceeeEEecC-CCceEEEecccce
Confidence 244544444333 6777778877654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 685 | ||||
| 2woz_A | 318 | The Novel Beta-Propeller Of The Btb-Kelch Protein K | 7e-05 | ||
| 4asc_A | 315 | Crystal Structure Of The Kelch Domain Of Human Kbtb | 7e-04 |
| >pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318 | Back alignment and structure |
|
| >pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5 Length = 315 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 146 bits (368), Expect = 1e-36
Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 35/285 (12%)
Query: 41 DAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVY 100
+ + LSI ++ K + V + P R + + +L+L GG
Sbjct: 413 EILQLSIHYDKIDMKNIEVSSS-EVPVARMCHTFTTIS-RNNQLLLIGGR--KAPHQG-L 467
Query: 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGGEFTSPNQERFHHYKDFW 159
D + +D++ +EW +I + R H A S + + I GG P
Sbjct: 468 SDNWIFDMKTREWSMI--KSLSHTRFRHSACSLPDGNVLILGGVTEGP---------AML 516
Query: 160 MLDLKTNQWEQLNLKG-CPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFD 215
+ ++ ++ + K + + + I+ GG + V ++ +D
Sbjct: 517 LYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD 576
Query: 216 LDQFKWQEIKPRFGSMWPSPRSGFQF-FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
+ + R G Q ++ ++ + GG S D+ + +
Sbjct: 577 AENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDR--------TNSI 628
Query: 275 WSLDPRTWEWSKVKKIGMPPGP----RAGFSMC-VHKKRALLFGG 314
SLDP + + + AGFS+ + GG
Sbjct: 629 ISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 3e-28
Identities = 33/264 (12%), Positives = 70/264 (26%), Gaps = 46/264 (17%)
Query: 91 FYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150
F + ++ E + P R N ++ GG
Sbjct: 354 FAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYR--- 410
Query: 151 RFHHYKDFWMLDLKTNQWEQLNLK----GCPSPRSGHRMVLYKH--KIIVFGGFYDTLRE 204
+ L + ++ + N++ P R H ++++ GG
Sbjct: 411 ----VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKA---P 463
Query: 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQD-EVFLYGGYSKEVSTDKN 263
+ +D ++FD+ +W IK R D V + GG ++
Sbjct: 464 HQGLSDNWIFDMKTREWSMIKS-----LSHTRFRHSACSLPDGNVLILGGVTEG------ 512
Query: 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH----KKRALLFGGVVDME 319
+ + + V + K+ +L GG +D
Sbjct: 513 --------PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQT 564
Query: 320 MKGDVIMSLFLNELYGFQLDNHRW 343
D ++ + +N
Sbjct: 565 TVSDKA------IIFKYDAENATE 582
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-30
Identities = 43/252 (17%), Positives = 81/252 (32%), Gaps = 53/252 (21%)
Query: 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL--KTNQWEQLNLKGC 176
P +P P + + +YI G + ++ LD K +W L
Sbjct: 4 PETPVPFKSGTGAIDNDTVYIGLGSAGT----------AWYKLDTQAKDKKWTA--LAAF 51
Query: 177 P-SPRSGHRMVLYKHKIIVFGGF-YDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234
P PR + VFGG ++ + +ND++ ++ W ++ S P
Sbjct: 52 PGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKL----MSHAPM 107
Query: 235 PRSGFQFFVYQDEVFLYGGYSKEVSTD--------KNQSEK---------------GIIH 271
+G FV+ + ++ GG ++ + S +
Sbjct: 108 GMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFN 167
Query: 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLN 331
L S DP T +WS + P AG ++ + L G E K + +
Sbjct: 168 KFLLSFDPSTQQWSYAGE--SPWYGTAGAAVVNKGDKTWLING----EAKPGL----RTD 217
Query: 332 ELYGFQLDNHRW 343
++ +
Sbjct: 218 AVFELDFTGNNL 229
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 5e-29
Identities = 47/325 (14%), Positives = 92/325 (28%), Gaps = 71/325 (21%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP 123
P P + + + + + G G Y + ++W ++
Sbjct: 5 ETPVPFKSGTGA---IDNDTVYIGLG--SAGTAWYKL----DTQAKDKKWTALA-AFPGG 54
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGH 183
PR + LY+FGG + + D + KTN W +L P +GH
Sbjct: 55 PRDQATSAFIDGNLYVFGGIGKNSEGLT-QVFNDVHKYNPKTNSWVKLM-SHAPMGMAGH 112
Query: 184 RMVLYKHKIIVFGGF-----------YDTLR-------------------EVRYYNDLYV 213
++ K V GG + + + L
Sbjct: 113 VTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172
Query: 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSD 273
FD +W G +G D+ +L G +K G+
Sbjct: 173 FDPSTQQWSYA----GESPWYGTAGAAVVNKGDKTWLINGEAKP----------GLRTDA 218
Query: 274 LWSL--DPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKG--------- 322
++ L +W+K+ + P G AG + + GG +
Sbjct: 219 VFELDFTGNNLKWNKLAPVSSPDG-VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYA 277
Query: 323 -DVIMSLFLNELYGFQLDNHRWYPL 346
+ + + +++ + +W
Sbjct: 278 HEGLKKSYSTDIHLWHNG--KWDKS 300
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 6e-28
Identities = 45/296 (15%), Positives = 81/296 (27%), Gaps = 54/296 (18%)
Query: 84 LILYGGEFYNGNKTY-VYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142
L ++GG N V+ D+++Y+ + W + S P + H Y+ GG
Sbjct: 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGG 126
Query: 143 ---------------------EFTSPNQERFHH-------YKDFWMLDLKTNQWEQLNLK 174
N F K D T QW
Sbjct: 127 VNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA--G 184
Query: 175 GCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233
P +G +V K + G + + ++ D + P
Sbjct: 185 ESPWYGTAGAAVVNKGDKTWLINGE---AKPGLRTDAVFELDFTGNNLKW-NKLAPVSSP 240
Query: 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIH---SDLWSL---DPRTWEWSKV 287
+G + D + GG + S + Q+ K H +S +W K
Sbjct: 241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300
Query: 288 KKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343
++ RA L+ GG G + + + +++
Sbjct: 301 GEL---SQGRAYGVSLPWNNSLLIIGGETA---GGKA-----VTDSVLITVKDNKV 345
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 1e-13
Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 21/152 (13%)
Query: 84 LILYGGEFYNGNKT-YVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142
L GE G +T V+ + +W ++ +SP + A + L GG
Sbjct: 203 TWLINGEAKPGLRTDAVF--ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGG 260
Query: 143 EFTSPNQERFHHYKDFW-----------MLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKH 190
++E + + K++ + +W++ L R+ + + +
Sbjct: 261 AGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL---SQGRAYGVSLPWNN 317
Query: 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222
+++ GG + D + + K
Sbjct: 318 SLLIIGGETA---GGKAVTDSVLITVKDNKVT 346
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 4e-27
Identities = 35/200 (17%), Positives = 66/200 (33%), Gaps = 25/200 (12%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
YD +W + + H +S +Y GG+ ++ + K
Sbjct: 131 CYDPVAAKWSEVKNLPIK--VYGHNVISHNGMIYCLGGKTDDKK-----CTNRVFIYNPK 183
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
W+ L +PRS + ++K KI++ GG + + FDL KW+ +
Sbjct: 184 KGDWKDL--APMKTPRSMFGVAIHKGKIVIAGGVTED----GLSASVEAFDLKTNKWEVM 237
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
P RS ++ GG++ K + + +D+W + EW
Sbjct: 238 TE----F-PQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEV--NDIWKYEDDKKEW 290
Query: 285 SKVKKIGMPPGPRAGFSMCV 304
+ + R
Sbjct: 291 AGM-----LKEIRYASGASC 305
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-24
Identities = 44/285 (15%), Positives = 110/285 (38%), Gaps = 37/285 (12%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTY--VYGDLYRYDVEKQEWKVISSPNS 121
PR++ S+ ++ ++ + GG + + + ++ D EW + S
Sbjct: 42 AEQIPRNHSSIVT---QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS 98
Query: 122 PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPR 180
R + +Y+ G+ + + D +W ++ NL P
Sbjct: 99 A--RCLFGLGEVDDKIYVVAGK----DLQTEASLDSVLCYDPVAAKWSEVKNL---PIKV 149
Query: 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240
GH ++ + I GG D + N +++++ + W+++ P M +PRS F
Sbjct: 150 YGHNVISHNGMIYCLGGKTDDKK---CTNRVFIYNPKKGDWKDLAP----M-KTPRSMFG 201
Query: 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300
+++ ++ + GG +++ + + + + D +T +W + + P R+
Sbjct: 202 VAIHKGKIVIAGGVTEDGLS-----------ASVEAFDLKTNKWEVMTEF---PQERSSI 247
Query: 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345
S+ GG ++++ +N+++ ++ D W
Sbjct: 248 SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 27/220 (12%)
Query: 98 YVYGD--LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155
+ D YD + E + + PR+ V+ +N +Y+ GG + +
Sbjct: 19 LLVNDTAAVAYDPMENECYLTALAE-QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQ 77
Query: 156 KDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214
F+ LD +++W L L PS R + KI V G + + +
Sbjct: 78 SYFFQLDNVSSEWVGLPPL---PSARCLFGLGEVDDKIYVVAGKDLQTEA--SLDSVLCY 132
Query: 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
D KW E+K + P G + ++ GG + + + +
Sbjct: 133 DPVAAKWSEVKN----L-PIKVYGHNVISHNGMIYCLGGKTDDKK----------CTNRV 177
Query: 275 WSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
+ +P+ +W + M PR+ F + +HK + ++ GG
Sbjct: 178 FIYNPKKGDWKDLAP--M-KTPRSMFGVAIHKGKIVIAGG 214
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 5e-26
Identities = 34/211 (16%), Positives = 63/211 (29%), Gaps = 25/211 (11%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
YD +W H +S + +Y+ GG S + + D K
Sbjct: 121 CYDRLSFKWGESDPLPYV--VYGHTVLSHMDLVYVIGG-KGSDRK----CLNKMCVYDPK 173
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
+W++L + RS ++ +IIV G DT + V+ + KW
Sbjct: 174 KFEWKEL--APMQTARSLFGATVHDGRIIVAAGVTDT----GLTSSAEVYSITDNKWAPF 227
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
+ P RS ++ GG++ + + +D+W + +W
Sbjct: 228 EA----F-PQERSSLSLVSLVGTLYAIGGFATLETESGELVPTEL--NDIWRYNEEEKKW 280
Query: 285 SKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315
V R +
Sbjct: 281 EGV-----LREIAYAAGATFLPVRLNVLRLT 306
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 9e-26
Identities = 46/220 (20%), Positives = 82/220 (37%), Gaps = 26/220 (11%)
Query: 98 YVYG--DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155
++ YD E S + P++ V+ +N +++ GG F + + +
Sbjct: 8 FMISEEGAVAYDPAANECYCASLSS-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66
Query: 156 KDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214
F D ++W + L PSPR + + I V GG + R + + +
Sbjct: 67 AYFLQFDHLDSEWLGMPPL---PSPRCLFGLGEALNSIYVVGG-REIKDGERCLDSVMCY 122
Query: 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
D FKW E P + P G + D V++ GG + + +
Sbjct: 123 DRLSFKWGESDP----L-PYVVYGHTVLSHMDLVYVIGGKGSDRK----------CLNKM 167
Query: 275 WSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
DP+ +EW ++ M R+ F VH R ++ G
Sbjct: 168 CVYDPKKFEWKELAP--M-QTARSLFGATVHDGRIIVAAG 204
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 8e-25
Identities = 53/286 (18%), Positives = 103/286 (36%), Gaps = 36/286 (12%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNS 121
+ P+++ SL KE ++ + GG FYN + + ++D EW + S
Sbjct: 31 SSQVPKNHVSLVT---KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS 87
Query: 122 PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPR 180
P R N +Y+ GG + D + +W + L P
Sbjct: 88 P--RCLFGLGEALNSIYVVGGREIKDGERCL---DSVMCYDRLSFKWGESDPL---PYVV 139
Query: 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240
GH ++ + + V GG + N + V+D +F+W+E+ P M + RS F
Sbjct: 140 YGHTVLSHMDLVYVIGGKGSD---RKCLNKMCVYDPKKFEWKELAP----M-QTARSLFG 191
Query: 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300
V+ + + G + S +W+ + P R+
Sbjct: 192 ATVHDGRIIVAAGVTDTGL-----------TSSAEVYSITDNKWAPFEAF---PQERSSL 237
Query: 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
S+ GG +E + ++ LN+++ + + +W +
Sbjct: 238 SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 6e-23
Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 30/204 (14%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
Y+++ EW ++ N+ RS+ LY GG + +++ +
Sbjct: 128 AYNIKSNEWFHVAPMNTR--RSSVGVGVVGGLLYAVGG-YDVASRQCL---STVECYNAT 181
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
TN+W + + RSG + + + + GG + V+D W+++
Sbjct: 182 TNEWTYI--AEMSTRRSGAGVGVLNNLLYAVGGHDGP----LVRKSVEVYDPTTNAWRQV 235
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
M R +++ GG + + +P T +W
Sbjct: 236 AD----M-NMCRRNAGVCAVNGLLYVVGGDDGSCNLASVE-----------YYNPTTDKW 279
Query: 285 SKVKKIGMPPGPRAGFSMCVHKKR 308
+ V R+ + V KR
Sbjct: 280 TVVSS--CMSTGRSYAGVTVIDKR 301
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 6e-21
Identities = 41/238 (17%), Positives = 76/238 (31%), Gaps = 37/238 (15%)
Query: 78 PLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYL 137
P+ +L++ G V YD +++ W ++ P R V +
Sbjct: 11 PMNLPKLMVVVGGQAPKAIRSVE----CYDFKEERWHQVAEL--PSRRCRAGMVYMAGLV 64
Query: 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFG 196
+ GG S + D +QW + N+ RS + + G
Sbjct: 65 FAVGGFNGS------LRVRTVDSYDPVKDQWTSVANM---RDRRSTLGAAVLNGLLYAVG 115
Query: 197 GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256
GF + + + +++ +W + P M + RS V ++ GGY
Sbjct: 116 GFDGS----TGLSSVEAYNIKSNEWFHVAP----M-NTRRSSVGVGVVGGLLYAVGGYD- 165
Query: 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
S + + T EW+ + + M R+G + V GG
Sbjct: 166 --------VASRQCLSTVECYNATTNEWTYIAE--MST-RRSGAGVGVLNNLLYAVGG 212
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 7e-20
Identities = 45/255 (17%), Positives = 82/255 (32%), Gaps = 46/255 (18%)
Query: 64 PAPSPRSN---CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN 120
PS R + + GG +NG+ + YD K +W +++
Sbjct: 47 ELPSRRCRAGMVYMA------GLVFAVGG--FNGSLRV--RTVDSYDPVKDQWTSVANMR 96
Query: 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP 179
RS A LY GG + ++K+N+W + + +
Sbjct: 97 DR--RSTLGAAVLNGLLYAVGG------FDGSTGLSSVEAYNIKSNEWFHVAPM---NTR 145
Query: 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239
RS + + + GG+ R+ + + ++ +W I M + RSG
Sbjct: 146 RSSVGVGVVGGLLYAVGGYDVASRQ--CLSTVECYNATTNEWTYIAE----M-STRRSGA 198
Query: 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299
V + ++ GG+ + + DP T W +V M R
Sbjct: 199 GVGVLNNLLYAVGGHDGPLV-----------RKSVEVYDPTTNAWRQVAD--MN-MCRRN 244
Query: 300 FSMCVHKKRALLFGG 314
+C + GG
Sbjct: 245 AGVCAVNGLLYVVGG 259
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 31/192 (16%), Positives = 56/192 (29%), Gaps = 32/192 (16%)
Query: 123 PPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG 182
++ + + GG+ + D K +W Q + PS R
Sbjct: 4 VRTRLRTPMNLPKLMVVVGGQAPKA-------IRSVECYDFKEERWHQ--VAELPSRRCR 54
Query: 183 HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFF 242
MV + GGF + + +D + +W + M RS
Sbjct: 55 AGMVYMAGLVFAVGGFNGS----LRVRTVDSYDPVKDQWTSVAN----M-RDRRSTLGAA 105
Query: 243 VYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302
V ++ GG+ S + + + ++ EW V M R+ +
Sbjct: 106 VLNGLLYAVGGFDGSTG-----------LSSVEAYNIKSNEWFHVAP--M-NTRRSSVGV 151
Query: 303 CVHKKRALLFGG 314
V GG
Sbjct: 152 GVVGGLLYAVGG 163
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 23/137 (16%)
Query: 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237
S R+ R + K++V G + + +D + +W ++ + PS R
Sbjct: 3 SVRTRLRTPMNLPKLMVVVGGQAP----KAIRSVECYDFKEERWHQVAE----L-PSRRC 53
Query: 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297
VF GG++ + + S DP +W+ V M R
Sbjct: 54 RAGMVYMAGLVFAVGGFNGSLRVR-----------TVDSYDPVKDQWTSVA--NM-RDRR 99
Query: 298 AGFSMCVHKKRALLFGG 314
+ V GG
Sbjct: 100 STLGAAVLNGLLYAVGG 116
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 104 YRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL 163
YD W+ ++ N R + LY+ GG+ S N +Y +
Sbjct: 223 EVYDPTTNAWRQVADMNM--CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYY------NP 274
Query: 164 KTNQWEQLNLKGCPSPRSGHRMVLYKHKI 192
T++W ++ + RS + + ++
Sbjct: 275 TTDKWTVVS-SCMSTGRSYAGVTVIDKRL 302
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 6e-23
Identities = 45/252 (17%), Positives = 81/252 (32%), Gaps = 40/252 (15%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP 123
PR + + + LI G ++ + +Y+ Y+ W ++
Sbjct: 11 SGLVPRGSHAPKVG-----RLIYTAGGYFRQSLSYLE----AYNPSNGTWLRLADL--QV 59
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSG 182
PRS LY GG SP+ + TNQW + PR+
Sbjct: 60 PRSGLAGCVVGGLLYAVGGRNNSPDGNT--DSSALDCYNPMTNQWSPCAPM---SVPRNR 114
Query: 183 HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFF 242
+ + I GG + ++N + ++ ++ +W + P M + R G
Sbjct: 115 IGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWHLVAP----M-LTRRIGVGVA 165
Query: 243 VYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302
V ++ GG+ + + P EW + M R+G +
Sbjct: 166 VLNRLLYAVGGFDGTNRLNSAE-----------CYYPERNEWRMITA--MNT-IRSGAGV 211
Query: 303 CVHKKRALLFGG 314
CV GG
Sbjct: 212 CVLHNCIYAAGG 223
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 9e-23
Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 41/204 (20%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ----ERFHHYKDFWM 160
RY+ E+ EW +++ + R LY GG F N+ E +
Sbjct: 141 RYEPERDEWHLVAPMLTR--RIGVGVAVLNRLLYAVGG-FDGTNRLNSAECY-------- 189
Query: 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220
+ N+W + + RSG + + + I GG+ N + +D++
Sbjct: 190 -YPERNEWRMI--TAMNTIRSGAGVCVLHNCIYAAGGYDGQ----DQLNSVERYDVETET 242
Query: 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280
W + P M RS V+Q +++ GGY D + DP
Sbjct: 243 WTFVAP----M-KHRRSALGITVHQGRIYVLGGYDGHTFLDSVE-----------CYDPD 286
Query: 281 TWEWSKVKKIGMPPGPRAGFSMCV 304
T WS+V ++ R+G + V
Sbjct: 287 TDTWSEVTRM---TSGRSGVGVAV 307
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 46/255 (18%), Positives = 82/255 (32%), Gaps = 44/255 (17%)
Query: 64 PAPSPRSN---CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN 120
PRS C + L GG + + L Y+ +W + +
Sbjct: 56 DLQVPRSGLAGCVVG------GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS 109
Query: 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP 179
PR+ ++Y GG H+ + + ++W + + +
Sbjct: 110 V--PRNRIGVGVIDGHIYAVGG------SHGCIHHNSVERYEPERDEWHLVAPM---LTR 158
Query: 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239
R G + + + GGF N + ++ +W+ I M + RSG
Sbjct: 159 RIGVGVAVLNRLLYAVGGF----DGTNRLNSAECYYPERNEWRMITA----M-NTIRSGA 209
Query: 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299
V + ++ GGY N E+ D T W+ V M R+
Sbjct: 210 GVCVLHNCIYAAGGYDG--QDQLNSVER---------YDVETETWTFVAP--M-KHRRSA 255
Query: 300 FSMCVHKKRALLFGG 314
+ VH+ R + GG
Sbjct: 256 LGITVHQGRIYVLGG 270
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 36/196 (18%), Positives = 58/196 (29%), Gaps = 29/196 (14%)
Query: 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178
+ PR +H A +Y GG F + W +L
Sbjct: 10 SSGLVPRGSH-APKVGRLIYTAGGYFRQS-------LSYLEAYNPSNGTWLRL--ADLQV 59
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
PRSG + + GG ++ + L ++ +W P M PR+
Sbjct: 60 PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP----M-SVPRNR 114
Query: 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298
V ++ GG + H+ + +P EW V M R
Sbjct: 115 IGVGVIDGHIYAVGGSHGCIH-----------HNSVERYEPERDEWHLVAP--M-LTRRI 160
Query: 299 GFSMCVHKKRALLFGG 314
G + V + GG
Sbjct: 161 GVGVAVLNRLLYAVGG 176
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 38/230 (16%), Positives = 64/230 (27%), Gaps = 36/230 (15%)
Query: 91 FYNGNKTYVYG-----DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
+ + ++G ++ + W I P R V W N +YI GG
Sbjct: 9 KKHDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK--RRDAACVFWDNVVYILGGSQL 66
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204
P K ++ + W P+PR + KI GG
Sbjct: 67 FP-------IKRMDCYNVVKDSWYSKLGP---PTPRDSLAACAAEGKIYTSGGSEVG--- 113
Query: 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQ 264
+D W M + R +++ GG
Sbjct: 114 NSALYLFECYDTRTESWHTKPS----M-LTQRCSHGMVEANGLIYVCGGSL-------GN 161
Query: 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
+ G + + DP T W+++ M R + K + GG
Sbjct: 162 NVSGRVLNSCEVYDPATETWTELCP--M-IEARKNHGLVFVKDKIFAVGG 208
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 6e-22
Identities = 48/230 (20%), Positives = 69/230 (30%), Gaps = 38/230 (16%)
Query: 94 GNKTYVYG--------DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
N Y+ G + Y+V K W P +P R + A + + +Y GG
Sbjct: 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP--RDSLAACAAEGKIYTSGG-SE 111
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204
N F D +T W ++ + R H MV I V GG
Sbjct: 112 VGN----SALYLFECYDTRTESWHTKPSM---LTQRCSHGMVEANGLIYVCGGSLGNNVS 164
Query: 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQ 264
R N V+D W E+ P M R +D++F GG + D +
Sbjct: 165 GRVLNSCEVYDPATETWTELCP----M-IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVE 219
Query: 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
D + EW V M P + G
Sbjct: 220 -----------YYDIKLNEWKMVSP--M-PWKGVTVKCAAVGSIVYVLAG 255
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 4e-21
Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 28/200 (14%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
YD + W S + R +H V +Y+ GG + R + D
Sbjct: 122 CYDTRTESWHTKPSMLTQ--RCSHGMVEANGLIYVCGGSLGNNVSGR--VLNSCEVYDPA 177
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
T W +L R H +V K KI GG +++ +D+ +W+ +
Sbjct: 178 TETWTEL--CPMIEARKNHGLVFVKDKIFAVGGQNGL----GGLDNVEYYDIKLNEWKMV 231
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
P M P + V++ G+ + + T +W
Sbjct: 232 SP----M-PWKGVTVKCAAVGSIVYVLAGFQGVGRLG-----------HILEYNTETDKW 275
Query: 285 SKVKKIGMPPGPRAGFSMCV 304
K + P +CV
Sbjct: 276 VANSK--VRAFPVTSCLICV 293
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 22/156 (14%)
Query: 86 LY--GGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGE 143
+Y GG N V YD + W + R H V K+ ++ GG+
Sbjct: 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA--RKNHGLVFVKDKIFAVGGQ 209
Query: 144 FTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTL 202
+ D+K N+W+ + + P + + V GF
Sbjct: 210 NGL------GGLDNVEYYDIKLNEWKMVSPM---PWKGVTVKCAAVGSIVYVLAGF---- 256
Query: 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
+ V + ++ + KW + P +
Sbjct: 257 QGVGRLGHILEYNTETDKWVAN----SKVRAFPVTS 288
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 5e-08
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 28/137 (20%)
Query: 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237
S + R + ++I +FGG + RY+ + + W +I+ R
Sbjct: 1 SMGTRPRRKKHDYRIALFGG--SQPQSCRYF------NPKDYSWTDIRC----P-FEKRR 47
Query: 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297
+ + V++ GG + + W G P PR
Sbjct: 48 DAACVFWDNVVYILGGSQ------------LFPIKRMDCYNVVKDSWYSKL--GP-PTPR 92
Query: 298 AGFSMCVHKKRALLFGG 314
+ C + + GG
Sbjct: 93 DSLAACAAEGKIYTSGG 109
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-21
Identities = 39/200 (19%), Positives = 61/200 (30%), Gaps = 33/200 (16%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
RYD +W ++ + R V +Y GG + N D
Sbjct: 132 RYDPNIDQWSMLGDMQTA--REGAGLVVASGVIYCLGG-YDGLN-----ILNSVEKYDPH 183
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
T W + + RSG + L I V GGF T + + + +++ W +
Sbjct: 184 TGHWTNV--TPMATKRSGAGVALLNDHIYVVGGFDGT----AHLSSVEAYNIRTDSWTTV 237
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
SM +PR V + ++ GY + DP W
Sbjct: 238 ----TSM-TTPRCYVGATVLRGRLYAIAGYDGNSLLS-----------SIECYDPIIDSW 281
Query: 285 SKVKKIGMPPGPRAGFSMCV 304
V M R +CV
Sbjct: 282 EVVTS--M-GTQRCDAGVCV 298
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 7e-19
Identities = 50/253 (19%), Positives = 87/253 (34%), Gaps = 45/253 (17%)
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
PR+ L N + L++ GG + ++ + + +YD + QEW + S R
Sbjct: 3 QGPRTRARLGANEV----LLVVGG--FGSQQSPI-DVVEKYDPKTQEWSFLPSITRK--R 53
Query: 126 SAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQL-NLKGCPSPRS 181
+VS + +Y+ GG LD ++ W + + R
Sbjct: 54 RYVASVSLHDRIYVIGGYDGR------SRLSSVECLDYTADEDGVWYSVAPM---NVRRG 104
Query: 182 GHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQF 241
I V GGF + R + + +D + +W + M + R G
Sbjct: 105 LAGATTLGDMIYVSGGFDGS----RRHTSMERYDPNIDQWSMLGD----M-QTAREGAGL 155
Query: 242 FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301
V ++ GGY D I + + DP T W+ V M R+G
Sbjct: 156 VVASGVIYCLGGY------DGLN-----ILNSVEKYDPHTGHWTNVTP--MAT-KRSGAG 201
Query: 302 MCVHKKRALLFGG 314
+ + + GG
Sbjct: 202 VALLNDHIYVVGG 214
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 4e-17
Identities = 45/231 (19%), Positives = 76/231 (32%), Gaps = 42/231 (18%)
Query: 88 GGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEF 144
GG Y+G + D E W ++ N R A + + +Y+ GG
Sbjct: 69 GG--YDGRSRL--SSVECLDYTADEDGVWYSVAPMNVR--RGLAGATTLGDMIYVSGG-- 120
Query: 145 TSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR 203
+ + D +QW L ++ + R G +V+ I GG+
Sbjct: 121 ----FDGSRRHTSMERYDPNIDQWSMLGDM---QTAREGAGLVVASGVIYCLGGY----D 169
Query: 204 EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263
+ N + +D W + P M + RSG + D +++ GG+ +
Sbjct: 170 GLNILNSVEKYDPHTGHWTNVTP----M-ATKRSGAGVALLNDHIYVVGGFDGTAHL--S 222
Query: 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
E + RT W+ V M PR V + R G
Sbjct: 223 SVEA---------YNIRTDSWTTVTS--MT-TPRCYVGATVLRGRLYAIAG 261
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 3e-05
Identities = 65/488 (13%), Positives = 146/488 (29%), Gaps = 123/488 (25%)
Query: 38 DDIDAI-LLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNK 96
D+ D + + K K+E+ + + + + + T + +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEI--DHIIMSK----------DAVSGTLRLFWTLLSKQEEM 78
Query: 97 TYVY-GDLYRYDVEKQEWKV--ISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFH 153
+ ++ R + + + + I + P + ++ LY F N R
Sbjct: 79 VQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 154 HYKDF--WMLDLKTNQWEQLN-LKGCPSPRSGH----RMVLYKHKIIV---FGGFYDTLR 203
Y +L+L+ + ++ + G G V +K+ F F+ L+
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGS-----GKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 204 EVRYYNDLYVFDLDQFKWQEIKPRF---GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260
+ ++ Q +I P + + + + L
Sbjct: 191 NCNSPETV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---------K 239
Query: 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM-CVHKKRALL---FGGVV 316
K ++ ++ + + W F++ C + LL F V
Sbjct: 240 SKPYENCLLVLLNVQ--NAKAWN---------------AFNLSC----KILLTTRFKQVT 278
Query: 317 DMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHE-- 373
D FL+ + +H L K L K + +P E
Sbjct: 279 D-----------FLSAATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQDLP-REVL 323
Query: 374 KLNPIEAEEFDANEKDENA--EYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKP 431
NP + +D A + ++ N D L+ + +S+ VL +P
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKH-----VNCDKLTTIIESSL----NVL------EP 368
Query: 432 YESKKK-SDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNL 490
E +K + S+ P + L + + +D + ++ L+ +L
Sbjct: 369 AEYRKMFDRL--SVFPPSAH----------IPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 491 SKLDEWKC 498
+++
Sbjct: 417 --VEKQPK 422
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 5e-05
Identities = 83/603 (13%), Positives = 162/603 (26%), Gaps = 206/603 (34%)
Query: 27 ARRETKKISPEDDIDA-------ILLSIQKEEAKK--------------KEVHVEDNVPA 65
++ E I D + LLS Q+E +K + E P+
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
+ I YN N+ + ++ R + K+ R
Sbjct: 107 -------------MMTRMYIEQRDRLYNDNQVFAKYNVSR---LQPYLKL---------R 141
Query: 126 SAHQAVSWKNYLYIFG----GEFT-------SPNQERFHHYKDFWM-----------LDL 163
A + + I G G+ S + +K FW+ L++
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 164 KTNQWEQLNLKGCPSPRSGHRMVL-----------------YKHKIIVFGGFYDTLREVR 206
Q++ + L Y++ ++V L V+
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-------LLNVQ 254
Query: 207 YYNDLYVFDL--------------DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDE---VF 249
F+L D DE +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH---HSMTL----TPDEVKSLL 307
Query: 250 LYGGYSKEVSTDKNQ--SEKGIIHSDLWSL-------DPRTWE-WSKV------KKIGM- 292
K + E + S+ TW+ W V I
Sbjct: 308 -----LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 293 -----PPGPRAGFSMC------VHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341
P R F H LL ++ ++ +M + +N+L+ + L
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILL--SLIWFDVIKSDVM-VVVNKLHKYSL--- 416
Query: 342 RWYPLELRKEKSTK---DKLKKSSEQKPNSSALHEKLNPIEA----EEFDANEK-----D 389
+E + ++ST + + N ALH + ++ + FD+++ D
Sbjct: 417 ----VEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLD 470
Query: 390 -----------ENAEYYEEADE----------MESNI--DNLSECVPNSVIVDDGVLAAK 426
+N E+ E +E I D+ + S++ L
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL--- 527
Query: 427 SGGKPYES--KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDD 484
K Y+ + L+ I+ +I ++ K T + +M + E ++
Sbjct: 528 ---KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM--AEDEAIFEE 582
Query: 485 LYS 487
+
Sbjct: 583 AHK 585
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 2e-04
Identities = 40/263 (15%), Positives = 75/263 (28%), Gaps = 31/263 (11%)
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
R S + + + GG + G + Y + W + + P
Sbjct: 284 QVARGYQSSAT--MSDGRVFTIGGSWSGG---VFEKNGEVYSPSSKTWTSLPNAKVNPML 338
Query: 126 SAHQAVSWK--NYLYIFGGE----FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179
+A + ++ N+ ++FG + F + + Y D+K+ Q N P
Sbjct: 339 TADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 398
Query: 180 RSGHRMVL--YKHKIIVFGG-----FYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232
G+ ++ K KI+ FGG D L +
Sbjct: 399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHII-TLGEPGTSPNTVFAS----NGL- 452
Query: 233 PSPRSGFQFFVYQD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291
R+ V D F+ GG + + + + P + K
Sbjct: 453 YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP-----VFTPEIYVPEQDTFYKQNPNS 507
Query: 292 MPPGPRAGFSMCVHKKRALLFGG 314
+ S+ + R GG
Sbjct: 508 IVRV-YHSISLLLPDGRVFNGGG 529
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 685 | |||
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.97 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.96 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.76 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.74 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.68 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.68 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.64 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.51 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.46 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.46 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.31 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.28 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.2 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.13 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 97.11 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 97.06 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.04 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.9 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 96.9 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 96.87 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.85 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.84 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 96.84 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.78 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 96.73 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 96.69 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.64 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.52 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.46 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 96.45 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.45 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.44 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.42 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.41 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 96.4 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.39 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.39 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.38 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.37 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.35 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.31 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.24 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.22 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 96.22 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.19 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.16 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 96.12 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.06 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 96.04 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 96.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 95.96 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 95.91 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 95.87 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.85 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 95.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 95.79 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.79 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 95.77 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.71 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 95.7 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 95.69 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 95.67 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 95.67 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 95.64 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 95.62 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 95.59 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.57 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 95.54 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 95.54 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 95.53 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 95.48 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 95.46 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 95.44 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 95.43 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 95.41 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 95.35 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 95.32 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 95.29 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 95.28 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 95.27 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.26 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 95.19 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.16 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 95.15 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 95.14 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 95.12 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 95.1 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 95.09 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 95.02 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 94.96 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 94.94 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 94.9 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 94.88 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 94.87 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 94.84 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 94.83 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 94.79 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 94.79 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 94.79 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 94.78 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 94.77 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 94.75 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 94.71 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 94.67 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 94.67 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 94.64 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 94.64 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 94.62 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 94.61 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 94.6 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 94.53 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 94.52 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 94.51 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 94.49 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 94.47 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 94.41 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 94.39 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 94.38 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.36 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 94.31 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 94.29 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 94.23 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 94.15 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.05 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 94.04 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 94.03 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 94.02 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 93.93 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 93.88 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 93.85 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 93.8 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 93.78 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 93.78 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 93.77 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 93.76 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 93.73 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 93.7 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 93.69 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 93.52 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 93.5 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 93.49 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 93.47 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 93.44 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 93.42 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 93.41 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 93.36 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 93.23 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 93.22 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 93.2 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 93.16 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 93.15 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 93.14 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 93.14 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 93.12 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 93.1 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 93.06 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 93.05 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 93.05 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 93.01 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 92.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 92.95 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 92.91 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 92.89 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 92.85 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 92.77 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 92.71 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 92.69 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 92.61 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 92.51 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 92.47 | |
| 3ju4_A | 670 | Endo-N-acetylneuraminidase; endonf, polysia, high- | 92.41 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 92.26 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 92.18 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 92.16 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 92.11 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 92.04 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 91.99 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 91.68 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 91.66 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 91.61 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 91.6 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 91.6 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 91.59 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 91.53 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 91.41 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 91.23 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 91.2 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 91.18 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 91.12 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 91.08 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 90.77 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 90.73 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 90.69 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 90.56 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 90.36 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 90.07 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 90.05 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 90.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 89.88 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 89.58 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 89.55 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 89.53 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 89.39 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 89.37 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 89.35 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 89.06 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 89.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 88.96 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 88.81 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 88.66 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 88.6 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 88.45 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 88.28 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 88.18 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 87.76 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 87.69 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 87.58 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 87.49 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 87.07 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 86.7 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 86.55 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 86.54 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 86.22 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 86.07 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 85.74 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 85.64 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 85.48 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 84.98 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 84.87 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 84.51 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 84.39 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 84.36 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 84.15 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 84.06 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 83.49 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 83.46 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 83.15 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 82.6 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 82.19 | |
| 3oyo_A | 225 | Hemopexin fold protein CP4; seeds, plant protein; | 82.01 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 82.0 | |
| 1hxn_A | 219 | Hemopexin, HPX; heme, binding protein; 1.80A {Oryc | 81.97 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 81.87 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 81.28 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 81.08 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 80.52 |
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=378.62 Aligned_cols=289 Identities=18% Similarity=0.255 Sum_probs=241.3
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcC
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG 142 (685)
.+.|.+|..|+++.+ ++.||||||. ++ ..++++++||+.+++|..++. .|.+|.+|+++++++.||||||
T Consensus 9 ~~~~~~~~~~~~~~~---~~~i~v~GG~--~~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG 78 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKV---GRLIYTAGGY--FR---QSLSYLEAYNPSNGTWLRLAD--LQVPRSGLAGCVVGGLLYAVGG 78 (308)
T ss_dssp ------------CCC---CCCEEEECCB--SS---SBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECC
T ss_pred ccCCeeeCCccccCC---CCEEEEEeCc--CC---CCcceEEEEcCCCCeEeECCC--CCcccccceEEEECCEEEEECC
Confidence 456788999999988 8999999996 22 267899999999999999965 4689999999999999999999
Q ss_pred ccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE
Q 005655 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (685)
....... ...++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+
T Consensus 79 ~~~~~~~--~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 79 RNNSPDG--NTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWH 150 (308)
T ss_dssp EEEETTE--EEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEECCEETT----EECCCEEEEETTTTEEE
T ss_pred CcCCCCC--CeecceEEEECCCCCeEeECCC--CCcCccccEEEEECCEEEEEcCCCCC----cccccEEEECCCCCeEe
Confidence 8421111 2357899999999999999987 89999999999999999999998652 46899999999999999
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEE
Q 005655 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (685)
Q Consensus 223 ~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~ 302 (685)
.++++ |.+|.+|+++++++.|||+||+... ..++++++||+.+++|+.+.. +|.+|.+|++
T Consensus 151 ~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~ 211 (308)
T 1zgk_A 151 LVAPM-----LTRRIGVGVAVLNRLLYAVGGFDGT-----------NRLNSAECYYPERNEWRMITA---MNTIRSGAGV 211 (308)
T ss_dssp ECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEECCC---CSSCCBSCEE
T ss_pred ECCCC-----CccccceEEEEECCEEEEEeCCCCC-----------CcCceEEEEeCCCCeEeeCCC---CCCccccceE
Confidence 99876 8999999999999999999998765 347899999999999999865 4789999999
Q ss_pred EEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhh
Q 005655 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEE 382 (685)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (685)
++++++||||||... ...++++++||+.+++|..+..
T Consensus 212 ~~~~~~iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~---------------------------------- 248 (308)
T 1zgk_A 212 CVLHNCIYAAGGYDG---------QDQLNSVERYDVETETWTFVAP---------------------------------- 248 (308)
T ss_dssp EEETTEEEEECCBCS---------SSBCCCEEEEETTTTEEEECCC----------------------------------
T ss_pred EEECCEEEEEeCCCC---------CCccceEEEEeCCCCcEEECCC----------------------------------
Confidence 999999999999864 2347999999999999997653
Q ss_pred ccccccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEe
Q 005655 383 FDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVG 462 (685)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~ 462 (685)
+|.+|++|+++++
T Consensus 249 -------------------------------------------------------------------~p~~r~~~~~~~~ 261 (308)
T 1zgk_A 249 -------------------------------------------------------------------MKHRRSALGITVH 261 (308)
T ss_dssp -------------------------------------------------------------------CSSCCBSCEEEEE
T ss_pred -------------------------------------------------------------------CCCCccceEEEEE
Confidence 6899999999999
Q ss_pred cCEEEEEcCeeeccCeeeeeecccccccCCCCccEEeccCC
Q 005655 463 KDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPAS 503 (685)
Q Consensus 463 ~~~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~w~~~~~~~ 503 (685)
++.|||+||... ...++++|.||+.+ +.|+.+.++.
T Consensus 262 ~~~i~v~GG~~~----~~~~~~v~~yd~~~-~~W~~~~~~p 297 (308)
T 1zgk_A 262 QGRIYVLGGYDG----HTFLDSVECYDPDT-DTWSEVTRMT 297 (308)
T ss_dssp TTEEEEECCBCS----SCBCCEEEEEETTT-TEEEEEEECS
T ss_pred CCEEEEEcCcCC----CcccceEEEEcCCC-CEEeecCCCC
Confidence 999999999753 24589999999998 8999997663
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=364.48 Aligned_cols=269 Identities=18% Similarity=0.289 Sum_probs=236.2
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
++.||||||.. . ..++++++||+.+++|..++. .|.+|.+|+++++++.||||||.... ..++++|+
T Consensus 15 ~~~i~v~GG~~--~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~ 81 (302)
T 2xn4_A 15 PKLMVVVGGQA--P---KAIRSVECYDFKEERWHQVAE--LPSRRCRAGMVYMAGLVFAVGGFNGS------LRVRTVDS 81 (302)
T ss_dssp CEEEEEECCBS--S---SBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEESCBCSS------SBCCCEEE
T ss_pred CCEEEEECCCC--C---CCCCcEEEEcCcCCcEeEccc--CCcccccceEEEECCEEEEEeCcCCC------ccccceEE
Confidence 58999999952 2 256899999999999999975 46899999999999999999998643 24689999
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s 240 (685)
||+.+++|+.+++ +|.+|.+|++++++++||||||+... ..++++++||+.+++|+.++++ |.+|++|+
T Consensus 82 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 150 (302)
T 2xn4_A 82 YDPVKDQWTSVAN--MRDRRSTLGAAVLNGLLYAVGGFDGS----TGLSSVEAYNIKSNEWFHVAPM-----NTRRSSVG 150 (302)
T ss_dssp EETTTTEEEEECC--CSSCCBSCEEEEETTEEEEEEEECSS----CEEEEEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred ECCCCCceeeCCC--CCccccceEEEEECCEEEEEcCCCCC----ccCceEEEEeCCCCeEeecCCC-----CCcccCce
Confidence 9999999999987 89999999999999999999998643 3589999999999999999877 88999999
Q ss_pred EEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccC
Q 005655 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (685)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (685)
++++++.|||+||+... ....++++++||+.+++|+.+.. +|.+|.+|++++++++||||||...
T Consensus 151 ~~~~~~~iyv~GG~~~~---------~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~--- 215 (302)
T 2xn4_A 151 VGVVGGLLYAVGGYDVA---------SRQCLSTVECYNATTNEWTYIAE---MSTRRSGAGVGVLNNLLYAVGGHDG--- 215 (302)
T ss_dssp EEEETTEEEEECCEETT---------TTEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBSS---
T ss_pred EEEECCEEEEEeCCCCC---------CCccccEEEEEeCCCCcEEECCC---CccccccccEEEECCEEEEECCCCC---
Confidence 99999999999998754 12467899999999999999965 4789999999999999999999864
Q ss_pred CccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhh
Q 005655 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (685)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (685)
..+.+++++||+.+++|..+..
T Consensus 216 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 237 (302)
T 2xn4_A 216 ------PLVRKSVEVYDPTTNAWRQVAD---------------------------------------------------- 237 (302)
T ss_dssp ------SSBCCCEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred ------CcccceEEEEeCCCCCEeeCCC----------------------------------------------------
Confidence 2357899999999999998753
Q ss_pred ccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeee
Q 005655 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (685)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~ 480 (685)
+|.+|++|++++.++.|||+||.... .
T Consensus 238 -------------------------------------------------~~~~r~~~~~~~~~~~i~v~GG~~~~----~ 264 (302)
T 2xn4_A 238 -------------------------------------------------MNMCRRNAGVCAVNGLLYVVGGDDGS----C 264 (302)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS----S
T ss_pred -------------------------------------------------CCCccccCeEEEECCEEEEECCcCCC----c
Confidence 68899999999999999999997532 3
Q ss_pred eeecccccccCCCCccEEec
Q 005655 481 TLDDLYSLNLSKLDEWKCII 500 (685)
Q Consensus 481 tl~D~y~ldL~kld~w~~~~ 500 (685)
.++++|.||+.+ +.|+.+.
T Consensus 265 ~~~~v~~yd~~~-~~W~~~~ 283 (302)
T 2xn4_A 265 NLASVEYYNPTT-DKWTVVS 283 (302)
T ss_dssp BCCCEEEEETTT-TEEEECS
T ss_pred ccccEEEEcCCC-CeEEECC
Confidence 589999999998 8999986
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=376.83 Aligned_cols=305 Identities=19% Similarity=0.251 Sum_probs=240.8
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcC--CCcEEEecCCCCC-CCcceeEEEEECCEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSP-PPRSAHQAVSWKNYL 137 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~--~~~W~~l~s~~~P-~~R~~ha~v~~~~~i 137 (685)
.++++|.+|.+|+++++ ++.||||||.. .+++|+||+. +++|+.++++ | .+|++|++++++++|
T Consensus 2 ~l~~lP~~r~~~~~~~~---~~~iyv~GG~~--------~~~~~~~d~~~~~~~W~~~~~~--p~~~R~~~~~~~~~~~l 68 (357)
T 2uvk_A 2 VLPETPVPFKSGTGAID---NDTVYIGLGSA--------GTAWYKLDTQAKDKKWTALAAF--PGGPRDQATSAFIDGNL 68 (357)
T ss_dssp CSCCCSSCCCSCEEEEE---TTEEEEECGGG--------TTCEEEEETTSSSCCEEECCCC--TTCCCBSCEEEEETTEE
T ss_pred CCCCCCccccceEEEEE---CCEEEEEeCcC--------CCeEEEEccccCCCCeeECCCC--CCCcCccceEEEECCEE
Confidence 45789999999999998 89999999952 2489999998 4999999774 5 789999999999999
Q ss_pred EEEcCccC-CCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCC-------------
Q 005655 138 YIFGGEFT-SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR------------- 203 (685)
Q Consensus 138 yvfGG~~~-s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~------------- 203 (685)
|||||... ... ....++++|+||+.+++|+.+++.+ |.+|.+|++++++++||||||+.....
T Consensus 69 yv~GG~~~~~~~--~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 145 (357)
T 2uvk_A 69 YVFGGIGKNSEG--LTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKD 145 (357)
T ss_dssp EEECCEEECTTS--CEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTC
T ss_pred EEEcCCCCCCCc--cceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCc
Confidence 99999832 111 1346899999999999999999833 599999999999999999999753210
Q ss_pred -----------------ceeeeceEEEEEcCCCceEEeccCCCCCCCCC-ccceeEEEeCCEEEEEecccCCCCcccCCC
Q 005655 204 -----------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP-RSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (685)
Q Consensus 204 -----------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~-Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (685)
...+++++++||+.+++|+.+.++ |.+ |.+|+++++++.|||+||+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~iyv~GG~~~~-------- 212 (357)
T 2uvk_A 146 STAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES-----PWYGTAGAAVVNKGDKTWLINGEAKP-------- 212 (357)
T ss_dssp HHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC-----SSCCCBSCEEEEETTEEEEECCEEET--------
T ss_pred ccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCC-----CCCCcccccEEEECCEEEEEeeecCC--------
Confidence 012568999999999999999877 655 4559999999999999998754
Q ss_pred CCCceeeeEEEEeC--CCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCcc--------ccccccCCcEEE
Q 005655 266 EKGIIHSDLWSLDP--RTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGD--------VIMSLFLNELYG 335 (685)
Q Consensus 266 ~~~~~~~dv~~yd~--~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~--------~~~~~~~ndl~~ 335 (685)
+...+++++||+ .+++|+.+..+ ..|.+|.+|++++++++||||||......... ......++++++
T Consensus 213 --~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (357)
T 2uvk_A 213 --GLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDI 289 (357)
T ss_dssp --TEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEE
T ss_pred --CcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEE
Confidence 356788999986 99999999875 33556789999999999999999864211000 000123478999
Q ss_pred EECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcc
Q 005655 336 FQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNS 415 (685)
Q Consensus 336 yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (685)
||+.+++|..+..
T Consensus 290 yd~~~~~W~~~~~------------------------------------------------------------------- 302 (357)
T 2uvk_A 290 HLWHNGKWDKSGE------------------------------------------------------------------- 302 (357)
T ss_dssp EECC---CEEEEE-------------------------------------------------------------------
T ss_pred EecCCCceeeCCC-------------------------------------------------------------------
Confidence 9999999998754
Q ss_pred eeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeeeeeecccccccCCCCc
Q 005655 416 VIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDE 495 (685)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~ 495 (685)
+|.+|++|++++.++.||||||....+ ..++|+|.|+|+. +.
T Consensus 303 ----------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~~---~~~~~v~~l~~~~-~~ 344 (357)
T 2uvk_A 303 ----------------------------------LSQGRAYGVSLPWNNSLLIIGGETAGG---KAVTDSVLITVKD-NK 344 (357)
T ss_dssp ----------------------------------CSSCCBSSEEEEETTEEEEEEEECGGG---CEEEEEEEEEC-C-CS
T ss_pred ----------------------------------CCCCcccceeEEeCCEEEEEeeeCCCC---CEeeeEEEEEEcC-cE
Confidence 789999999999999999999987655 3489999999998 88
Q ss_pred cEEeccC
Q 005655 496 WKCIIPA 502 (685)
Q Consensus 496 w~~~~~~ 502 (685)
|.++.+.
T Consensus 345 ~~~~~~~ 351 (357)
T 2uvk_A 345 VTVQNLE 351 (357)
T ss_dssp CEEEC--
T ss_pred eEeeecc
Confidence 9988765
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=365.10 Aligned_cols=271 Identities=17% Similarity=0.242 Sum_probs=236.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
.+.||||||.. . .+++++||+.+++|..++.+ |.+|.+|+++++++.||||||.. . ..++++|+
T Consensus 11 ~~~l~~~GG~~--~-----~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~lyv~GG~~-~------~~~~~~~~ 74 (306)
T 3ii7_A 11 HDYRIALFGGS--Q-----PQSCRYFNPKDYSWTDIRCP--FEKRRDAACVFWDNVVYILGGSQ-L------FPIKRMDC 74 (306)
T ss_dssp CCEEEEEECCS--S-----TTSEEEEETTTTEEEECCCC--SCCCBSCEEEEETTEEEEECCBS-S------SBCCEEEE
T ss_pred cceEEEEeCCC--C-----CceEEEecCCCCCEecCCCC--CcccceeEEEEECCEEEEEeCCC-C------CCcceEEE
Confidence 47899999952 1 68999999999999999764 68999999999999999999986 1 25799999
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s 240 (685)
||+.+++|+.+++ +|.+|.+|++++++++||||||.... ...++++++||+.+++|+.++.+ |.+|.+|+
T Consensus 75 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 144 (306)
T 3ii7_A 75 YNVVKDSWYSKLG--PPTPRDSLAACAAEGKIYTSGGSEVG---NSALYLFECYDTRTESWHTKPSM-----LTQRCSHG 144 (306)
T ss_dssp EETTTTEEEEEEC--CSSCCBSCEEEEETTEEEEECCBBTT---BSCCCCEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred EeCCCCeEEECCC--CCccccceeEEEECCEEEEECCCCCC---CcEeeeEEEEeCCCCceEeCCCC-----cCCcceeE
Confidence 9999999999987 89999999999999999999998632 34689999999999999999877 88999999
Q ss_pred EEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccC
Q 005655 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (685)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (685)
++++++.|||+||+... ...+..++++++||+.+++|+.+.+ +|.+|.+|++++++++||||||....
T Consensus 145 ~~~~~~~iyv~GG~~~~-------~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~-- 212 (306)
T 3ii7_A 145 MVEANGLIYVCGGSLGN-------NVSGRVLNSCEVYDPATETWTELCP---MIEARKNHGLVFVKDKIFAVGGQNGL-- 212 (306)
T ss_dssp EEEETTEEEEECCEESC-------TTTCEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCEETT--
T ss_pred EEEECCEEEEECCCCCC-------CCcccccceEEEeCCCCCeEEECCC---ccchhhcceEEEECCEEEEEeCCCCC--
Confidence 99999999999998754 1112458899999999999999975 47899999999999999999998652
Q ss_pred CccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhh
Q 005655 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (685)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (685)
..++++++||+.+++|..+..
T Consensus 213 -------~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 233 (306)
T 3ii7_A 213 -------GGLDNVEYYDIKLNEWKMVSP---------------------------------------------------- 233 (306)
T ss_dssp -------EEBCCEEEEETTTTEEEECCC----------------------------------------------------
T ss_pred -------CCCceEEEeeCCCCcEEECCC----------------------------------------------------
Confidence 347899999999999997643
Q ss_pred ccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeee
Q 005655 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (685)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~ 480 (685)
+|.+|+.|+++++++.|||+||.... .
T Consensus 234 -------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~----~ 260 (306)
T 3ii7_A 234 -------------------------------------------------MPWKGVTVKCAAVGSIVYVLAGFQGV----G 260 (306)
T ss_dssp -------------------------------------------------CSCCBSCCEEEEETTEEEEEECBCSS----S
T ss_pred -------------------------------------------------CCCCccceeEEEECCEEEEEeCcCCC----e
Confidence 68999999999999999999998633 2
Q ss_pred eeecccccccCCCCccEEeccC
Q 005655 481 TLDDLYSLNLSKLDEWKCIIPA 502 (685)
Q Consensus 481 tl~D~y~ldL~kld~w~~~~~~ 502 (685)
.++++|.||+.+ +.|+.+.++
T Consensus 261 ~~~~~~~yd~~~-~~W~~~~~~ 281 (306)
T 3ii7_A 261 RLGHILEYNTET-DKWVANSKV 281 (306)
T ss_dssp BCCEEEEEETTT-TEEEEEEEE
T ss_pred eeeeEEEEcCCC-CeEEeCCCc
Confidence 688999999999 999998765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=359.82 Aligned_cols=271 Identities=20% Similarity=0.315 Sum_probs=237.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
++.||||||....+ ..++++++||+.+++|..++. .|.+|.+|+++++++.||||||.... ..++++|+
T Consensus 14 ~~~i~~~GG~~~~~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~l~v~GG~~~~------~~~~~~~~ 82 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQ---SPIDVVEKYDPKTQEWSFLPS--ITRKRRYVASVSLHDRIYVIGGYDGR------SRLSSVEC 82 (301)
T ss_dssp CEEEEEECCEETTT---EECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSS------CBCCCEEE
T ss_pred CCEEEEEeCccCCC---cceeEEEEEcCCCCeEEeCCC--CChhhccccEEEECCEEEEEcCCCCC------ccCceEEE
Confidence 68999999943222 367899999999999999976 46789999999999999999998632 25789999
Q ss_pred EECCCCc---EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcc
Q 005655 161 LDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (685)
Q Consensus 161 yD~~t~~---W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs 237 (685)
||+.+++ |+.+++ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+.++++ |.+|.
T Consensus 83 ~d~~~~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~~~-----p~~r~ 151 (301)
T 2vpj_A 83 LDYTADEDGVWYSVAP--MNVRRGLAGATTLGDMIYVSGGFDGS----RRHTSMERYDPNIDQWSMLGDM-----QTARE 151 (301)
T ss_dssp EETTCCTTCCCEEECC--CSSCCBSCEEEEETTEEEEECCBCSS----CBCCEEEEEETTTTEEEEEEEC-----SSCCB
T ss_pred EECCCCCCCeeEECCC--CCCCccceeEEEECCEEEEEcccCCC----cccceEEEEcCCCCeEEECCCC-----CCCcc
Confidence 9999999 999977 89999999999999999999998743 3489999999999999999877 88999
Q ss_pred ceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceec
Q 005655 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317 (685)
Q Consensus 238 ~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~ 317 (685)
+|+++++++.|||+||+... ..++++++||+.+++|+.+.. +|.+|.+|++++++++||||||...
T Consensus 152 ~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 152 GAGLVVASGVIYCLGGYDGL-----------NILNSVEKYDPHTGHWTNVTP---MATKRSGAGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp SCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCS
T ss_pred cceEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCcEEeCCC---CCcccccceEEEECCEEEEEeCCCC
Confidence 99999999999999998764 467899999999999999965 4789999999999999999999865
Q ss_pred ccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhh
Q 005655 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEE 397 (685)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (685)
. ..++++++||+.+++|..+..
T Consensus 218 ~---------~~~~~v~~yd~~~~~W~~~~~------------------------------------------------- 239 (301)
T 2vpj_A 218 T---------AHLSSVEAYNIRTDSWTTVTS------------------------------------------------- 239 (301)
T ss_dssp S---------SBCCCEEEEETTTTEEEEECC-------------------------------------------------
T ss_pred C---------cccceEEEEeCCCCcEEECCC-------------------------------------------------
Confidence 2 247899999999999998753
Q ss_pred hhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccC
Q 005655 398 ADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIND 477 (685)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~ 477 (685)
+|.+|+.|+++++++.|||+||....
T Consensus 240 ----------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~-- 265 (301)
T 2vpj_A 240 ----------------------------------------------------MTTPRCYVGATVLRGRLYAIAGYDGN-- 265 (301)
T ss_dssp ----------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS--
T ss_pred ----------------------------------------------------CCCcccceeEEEECCEEEEEcCcCCC--
Confidence 68899999999999999999997532
Q ss_pred eeeeeecccccccCCCCccEEeccC
Q 005655 478 QEITLDDLYSLNLSKLDEWKCIIPA 502 (685)
Q Consensus 478 re~tl~D~y~ldL~kld~w~~~~~~ 502 (685)
..++++|.||+.+ +.|+.+..+
T Consensus 266 --~~~~~v~~yd~~~-~~W~~~~~~ 287 (301)
T 2vpj_A 266 --SLLSSIECYDPII-DSWEVVTSM 287 (301)
T ss_dssp --SBEEEEEEEETTT-TEEEEEEEE
T ss_pred --cccccEEEEcCCC-CeEEEcCCC
Confidence 2589999999998 899998665
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=367.43 Aligned_cols=278 Identities=22% Similarity=0.384 Sum_probs=235.4
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
.+.|||||| +++++|||.+++|.. ++++.|.+|.+|+++++++.||||||.............+++|+
T Consensus 4 ~~~l~~~GG-----------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 71 (315)
T 4asc_A 4 QDLIFMISE-----------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQ 71 (315)
T ss_dssp EEEEEEEET-----------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEE
T ss_pred ceEEEEEcC-----------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEE
Confidence 468999999 479999999999997 55555789999999999999999999743222211234577999
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s 240 (685)
||+.+++|+.+++ +|.+|.+|++++++++||||||..... ....++++++||+.+++|+.++++ |.+|++|+
T Consensus 72 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 143 (315)
T 4asc_A 72 FDHLDSEWLGMPP--LPSPRCLFGLGEALNSIYVVGGREIKD-GERCLDSVMCYDRLSFKWGESDPL-----PYVVYGHT 143 (315)
T ss_dssp EETTTTEEEECCC--BSSCEESCEEEEETTEEEEECCEESST-TCCBCCCEEEEETTTTEEEECCCC-----SSCCBSCE
T ss_pred ecCCCCeEEECCC--CCcchhceeEEEECCEEEEEeCCcCCC-CCcccceEEEECCCCCcEeECCCC-----CCccccee
Confidence 9999999999987 899999999999999999999986321 134689999999999999999877 88999999
Q ss_pred EEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccC
Q 005655 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (685)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (685)
+++++++|||+||+... ...++++++||+.+++|+.+.+ .|.+|.+|++++++++||||||....
T Consensus 144 ~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~-- 208 (315)
T 4asc_A 144 VLSHMDLVYVIGGKGSD----------RKCLNKMCVYDPKKFEWKELAP---MQTARSLFGATVHDGRIIVAAGVTDT-- 208 (315)
T ss_dssp EEEETTEEEEECCBCTT----------SCBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEEEEECSS--
T ss_pred EEEECCEEEEEeCCCCC----------CcccceEEEEeCCCCeEEECCC---CCCchhceEEEEECCEEEEEeccCCC--
Confidence 99999999999998533 3568899999999999999875 47899999999999999999998652
Q ss_pred CccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhh
Q 005655 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (685)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (685)
..++++++||+.+++|..++.
T Consensus 209 -------~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 229 (315)
T 4asc_A 209 -------GLTSSAEVYSITDNKWAPFEA---------------------------------------------------- 229 (315)
T ss_dssp -------SEEEEEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred -------CccceEEEEECCCCeEEECCC----------------------------------------------------
Confidence 247899999999999998753
Q ss_pred ccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeec----c
Q 005655 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEI----N 476 (685)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~----g 476 (685)
+|.+|+.|+++++++.|||+||.... +
T Consensus 230 -------------------------------------------------~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 260 (315)
T 4asc_A 230 -------------------------------------------------FPQERSSLSLVSLVGTLYAIGGFATLETESG 260 (315)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEEEEEEEEECTTS
T ss_pred -------------------------------------------------CCCcccceeEEEECCEEEEECCccccCcCCc
Confidence 68999999999999999999998642 2
Q ss_pred Ce-eeeeecccccccCCCCccEEeccC
Q 005655 477 DQ-EITLDDLYSLNLSKLDEWKCIIPA 502 (685)
Q Consensus 477 ~r-e~tl~D~y~ldL~kld~w~~~~~~ 502 (685)
.. ...++|+|.||+.+ +.|+.+.+.
T Consensus 261 ~~~~~~~~~v~~yd~~~-~~W~~~~~~ 286 (315)
T 4asc_A 261 ELVPTELNDIWRYNEEE-KKWEGVLRE 286 (315)
T ss_dssp CEEEEEEEEEEEEETTT-TEEEEEESC
T ss_pred cccccccCcEEEecCCC-ChhhhhccC
Confidence 11 14689999999998 899999443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=364.67 Aligned_cols=284 Identities=21% Similarity=0.376 Sum_probs=235.0
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccC
Q 005655 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145 (685)
Q Consensus 66 P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~ 145 (685)
..+|.++.+ .+.||||||. ++++|||.+++|... +++.|.+|.+|+++++++.||||||...
T Consensus 6 ~~~r~~~~~------~~~i~~~GG~-----------~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~ 67 (318)
T 2woz_A 6 DIPRHGMFV------KDLILLVNDT-----------AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYV 67 (318)
T ss_dssp SSCCCCCSE------EEEEEEECSS-----------EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC
T ss_pred cccccccee------cchhhhcccc-----------ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCccc
Confidence 356666544 3689999993 479999999999984 4445689999999999999999999643
Q ss_pred CCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 146 s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
..........+++|+||+.+++|+.+++ +|.+|.+|++++++++||||||..... ...++++++||+.+++|+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W~~~~ 143 (318)
T 2woz_A 68 DEENKDQPLQSYFFQLDNVSSEWVGLPP--LPSARCLFGLGEVDDKIYVVAGKDLQT--EASLDSVLCYDPVAAKWSEVK 143 (318)
T ss_dssp -------CCCBEEEEEETTTTEEEECSC--BSSCBCSCEEEEETTEEEEEEEEBTTT--CCEEEEEEEEETTTTEEEEEC
T ss_pred CccccCCCccccEEEEeCCCCcEEECCC--CCccccccceEEECCEEEEEcCccCCC--CcccceEEEEeCCCCCEeECC
Confidence 2111001234569999999999999987 899999999999999999999986421 346899999999999999998
Q ss_pred cCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE
Q 005655 226 PRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 226 ~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
++ |.+|++|+++++++.|||+||+... ...++++++||+.+++|+.+.+ .|.+|.+|+++++
T Consensus 144 ~~-----p~~r~~~~~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~ 205 (318)
T 2woz_A 144 NL-----PIKVYGHNVISHNGMIYCLGGKTDD----------KKCTNRVFIYNPKKGDWKDLAP---MKTPRSMFGVAIH 205 (318)
T ss_dssp CC-----SSCEESCEEEEETTEEEEECCEESS----------SCBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE
T ss_pred CC-----CCcccccEEEEECCEEEEEcCCCCC----------CCccceEEEEcCCCCEEEECCC---CCCCcccceEEEE
Confidence 77 8899999999999999999998644 3567899999999999999975 4789999999999
Q ss_pred CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccc
Q 005655 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDA 385 (685)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (685)
+++||||||.... ..++++++||+.+++|..+..
T Consensus 206 ~~~iyv~GG~~~~---------~~~~~~~~yd~~~~~W~~~~~------------------------------------- 239 (318)
T 2woz_A 206 KGKIVIAGGVTED---------GLSASVEAFDLKTNKWEVMTE------------------------------------- 239 (318)
T ss_dssp TTEEEEEEEEETT---------EEEEEEEEEETTTCCEEECCC-------------------------------------
T ss_pred CCEEEEEcCcCCC---------CccceEEEEECCCCeEEECCC-------------------------------------
Confidence 9999999998752 347899999999999998653
Q ss_pred cccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCE
Q 005655 386 NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDT 465 (685)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~ 465 (685)
+|.+|+.|++++.++.
T Consensus 240 ----------------------------------------------------------------~p~~r~~~~~~~~~~~ 255 (318)
T 2woz_A 240 ----------------------------------------------------------------FPQERSSISLVSLAGS 255 (318)
T ss_dssp ----------------------------------------------------------------CSSCCBSCEEEEETTE
T ss_pred ----------------------------------------------------------------CCCcccceEEEEECCE
Confidence 6899999999999999
Q ss_pred EEEEcCeeecc--Ce---eeeeecccccccCCCCccEEec
Q 005655 466 LYVYGGMMEIN--DQ---EITLDDLYSLNLSKLDEWKCII 500 (685)
Q Consensus 466 Lyi~GG~~e~g--~r---e~tl~D~y~ldL~kld~w~~~~ 500 (685)
|||+||..... +. ...++|+|.||+.+ +.|+.+.
T Consensus 256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~-~~W~~~~ 294 (318)
T 2woz_A 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK-KEWAGML 294 (318)
T ss_dssp EEEECCBCCBC----CCBCCBCCCEEEEETTT-TEEEEEE
T ss_pred EEEECCeeccCCCCceeccceeeeEEEEeCCC-CEehhhc
Confidence 99999986421 11 13489999999999 8999983
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=360.70 Aligned_cols=252 Identities=20% Similarity=0.373 Sum_probs=212.9
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecC--CCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEE
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYN--GNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~--g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvf 140 (685)
.+.|.+|.+|++++. ++.||||||...+ +......+++++||+.+++|+.++++ |.+|.+|+++++++.||||
T Consensus 30 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~lyv~ 104 (315)
T 4asc_A 30 LSSQVPKNHVSLVTK---ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL--PSPRCLFGLGEALNSIYVV 104 (315)
T ss_dssp CCCCSCSSEEEEECT---TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB--SSCEESCEEEEETTEEEEE
T ss_pred CCCCCCccceEEEEE---CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC--CcchhceeEEEECCEEEEE
Confidence 345789999999988 8999999997432 22234567899999999999998764 6899999999999999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
||...... ...++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||.... ...++++++||+.+++
T Consensus 105 GG~~~~~~---~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 105 GGREIKDG---ERCLDSVMCYDRLSFKWGESDP--LPYVVYGHTVLSHMDLVYVIGGKGSD---RKCLNKMCVYDPKKFE 176 (315)
T ss_dssp CCEESSTT---CCBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCTT---SCBCCCEEEEETTTTE
T ss_pred eCCcCCCC---CcccceEEEECCCCCcEeECCC--CCCcccceeEEEECCEEEEEeCCCCC---CcccceEEEEeCCCCe
Confidence 99764211 1367999999999999999987 89999999999999999999998432 3468999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCccee
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~ 300 (685)
|+.++++ |.+|.+|++++++++|||+||+... ..++++++||+.+++|+.+.+ +|.+|.+|
T Consensus 177 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~ 237 (315)
T 4asc_A 177 WKELAPM-----QTARSLFGATVHDGRIIVAAGVTDT-----------GLTSSAEVYSITDNKWAPFEA---FPQERSSL 237 (315)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEEEEECSS-----------SEEEEEEEEETTTTEEEEECC---CSSCCBSC
T ss_pred EEECCCC-----CCchhceEEEEECCEEEEEeccCCC-----------CccceEEEEECCCCeEEECCC---CCCcccce
Confidence 9999877 8899999999999999999998765 468899999999999999975 58899999
Q ss_pred EEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEE
Q 005655 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (685)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (685)
++++++++||||||...............++++++||+.+++|..+
T Consensus 238 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 238 SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred eEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 9999999999999986532111112234678999999999999976
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=357.70 Aligned_cols=250 Identities=16% Similarity=0.382 Sum_probs=209.4
Q ss_pred CCCCCCcceEEEEeccCCCEEEEEcCeecCCC--ceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEc
Q 005655 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGN--KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFG 141 (685)
Q Consensus 64 ~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~--~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfG 141 (685)
+.|.+|.+|++++. ++.||||||...+.. .....+++++||+.+++|..++++ |.+|.+|++++++++|||||
T Consensus 42 ~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~G 116 (318)
T 2woz_A 42 AEQIPRNHSSIVTQ---QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL--PSARCLFGLGEVDDKIYVVA 116 (318)
T ss_dssp CTTSCSSEEEEECS---SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB--SSCBCSCEEEEETTEEEEEE
T ss_pred CccCCccceEEEEE---CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC--CccccccceEEECCEEEEEc
Confidence 45688999999888 899999999643321 122445699999999999999764 68899999999999999999
Q ss_pred CccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 142 G~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
|...... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||+... ..+++++++||+.+++|
T Consensus 117 G~~~~~~----~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 117 GKDLQTE----ASLDSVLCYDPVAAKWSEVKN--LPIKVYGHNVISHNGMIYCLGGKTDD---KKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp EEBTTTC----CEEEEEEEEETTTTEEEEECC--CSSCEESCEEEEETTEEEEECCEESS---SCBCCCEEEEETTTTEE
T ss_pred CccCCCC----cccceEEEEeCCCCCEeECCC--CCCcccccEEEEECCEEEEEcCCCCC---CCccceEEEEcCCCCEE
Confidence 9864322 357899999999999999987 89999999999999999999998643 23689999999999999
Q ss_pred EEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeE
Q 005655 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (685)
Q Consensus 222 ~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s 301 (685)
+.++++ |.+|.+|+++++++.|||+||+... ..++++++||+.+++|+.+.. .|.+|.+|+
T Consensus 188 ~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~ 248 (318)
T 2woz_A 188 KDLAPM-----KTPRSMFGVAIHKGKIVIAGGVTED-----------GLSASVEAFDLKTNKWEVMTE---FPQERSSIS 248 (318)
T ss_dssp EEECCC-----SSCCBSCEEEEETTEEEEEEEEETT-----------EEEEEEEEEETTTCCEEECCC---CSSCCBSCE
T ss_pred EECCCC-----CCCcccceEEEECCEEEEEcCcCCC-----------CccceEEEEECCCCeEEECCC---CCCcccceE
Confidence 999876 8999999999999999999998765 467899999999999999965 578999999
Q ss_pred EEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEE
Q 005655 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (685)
Q Consensus 302 ~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (685)
+++++++||||||..........+....++++|+||+.+++|..+
T Consensus 249 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 249 LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 999999999999986532222222235689999999999999976
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=349.17 Aligned_cols=238 Identities=19% Similarity=0.279 Sum_probs=210.0
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcC
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG 142 (685)
.++|.+|.+|+++++ ++.||||||.. +. ..++++++||+.+++|+.++++ |.+|.+|+++++++.||||||
T Consensus 46 ~~~p~~r~~~~~~~~---~~~lyv~GG~~--~~--~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG 116 (302)
T 2xn4_A 46 AELPSRRCRAGMVYM---AGLVFAVGGFN--GS--LRVRTVDSYDPVKDQWTSVANM--RDRRSTLGAAVLNGLLYAVGG 116 (302)
T ss_dssp CCCSSCCBSCEEEEE---TTEEEEESCBC--SS--SBCCCEEEEETTTTEEEEECCC--SSCCBSCEEEEETTEEEEEEE
T ss_pred ccCCcccccceEEEE---CCEEEEEeCcC--CC--ccccceEEECCCCCceeeCCCC--CccccceEEEEECCEEEEEcC
Confidence 578899999999998 89999999963 22 2568999999999999999864 689999999999999999999
Q ss_pred ccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE
Q 005655 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (685)
.... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||+.... ..+++++++||+.+++|+
T Consensus 117 ~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 117 FDGS------TGLSSVEAYNIKSNEWFHVAP--MNTRRSSVGVGVVGGLLYAVGGYDVAS--RQCLSTVECYNATTNEWT 186 (302)
T ss_dssp ECSS------CEEEEEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEETTT--TEECCCEEEEETTTTEEE
T ss_pred CCCC------ccCceEEEEeCCCCeEeecCC--CCCcccCceEEEECCEEEEEeCCCCCC--CccccEEEEEeCCCCcEE
Confidence 8643 257899999999999999987 899999999999999999999986543 246899999999999999
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEE
Q 005655 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (685)
Q Consensus 223 ~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~ 302 (685)
.+..+ |.+|++|+++++++.|||+||+... ..++++++||+.+++|+.+.. +|.+|.+|++
T Consensus 187 ~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~ 247 (302)
T 2xn4_A 187 YIAEM-----STRRSGAGVGVLNNLLYAVGGHDGP-----------LVRKSVEVYDPTTNAWRQVAD---MNMCRRNAGV 247 (302)
T ss_dssp EECCC-----SSCCBSCEEEEETTEEEEECCBSSS-----------SBCCCEEEEETTTTEEEEECC---CSSCCBSCEE
T ss_pred ECCCC-----ccccccccEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCCEeeCCC---CCCccccCeE
Confidence 99876 8899999999999999999998754 457889999999999999975 4788999999
Q ss_pred EEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
++++++||||||... ...++++++||+.+++|..++
T Consensus 248 ~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 248 CAVNGLLYVVGGDDG---------SCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp EEETTEEEEECCBCS---------SSBCCCEEEEETTTTEEEECS
T ss_pred EEECCEEEEECCcCC---------CcccccEEEEcCCCCeEEECC
Confidence 999999999999864 234789999999999999865
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=348.67 Aligned_cols=243 Identities=19% Similarity=0.288 Sum_probs=213.7
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvf 140 (685)
...++|.+|.+|+++++ ++.||||||..........++++++||+.+++|+.++++ |.+|.+|++++++++||||
T Consensus 53 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~ 127 (308)
T 1zgk_A 53 RLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM--SVPRNRIGVGVIDGHIYAV 127 (308)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC--SSCCBTCEEEEETTEEEEE
T ss_pred ECCCCCcccccceEEEE---CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCC--CcCccccEEEEECCEEEEE
Confidence 34678999999999998 899999999743223345789999999999999999764 6899999999999999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
||.... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||+.... .++++++||+.+++
T Consensus 128 GG~~~~------~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 128 GGSHGC------IHHNSVERYEPERDEWHLVAP--MLTRRIGVGVAVLNRLLYAVGGFDGTN----RLNSAECYYPERNE 195 (308)
T ss_dssp CCEETT------EECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSSC----BCCCEEEEETTTTE
T ss_pred cCCCCC------cccccEEEECCCCCeEeECCC--CCccccceEEEEECCEEEEEeCCCCCC----cCceEEEEeCCCCe
Confidence 998653 357899999999999999987 899999999999999999999986543 38999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCccee
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~ 300 (685)
|+.+..+ |.+|.+|+++++++.|||+||+... ..++++++||+.+++|+.+.. +|.+|.+|
T Consensus 196 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~ 256 (308)
T 1zgk_A 196 WRMITAM-----NTIRSGAGVCVLHNCIYAAGGYDGQ-----------DQLNSVERYDVETETWTFVAP---MKHRRSAL 256 (308)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEECCC---CSSCCBSC
T ss_pred EeeCCCC-----CCccccceEEEECCEEEEEeCCCCC-----------CccceEEEEeCCCCcEEECCC---CCCCccce
Confidence 9999876 8899999999999999999998754 457899999999999999874 57899999
Q ss_pred EEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
++++++++||||||... ...++++++||+.+++|..++.
T Consensus 257 ~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 257 GITVHQGRIYVLGGYDG---------HTFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp EEEEETTEEEEECCBCS---------SCBCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCEEEEEcCcCC---------CcccceEEEEcCCCCEEeecCC
Confidence 99999999999999764 2457899999999999998865
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=348.78 Aligned_cols=243 Identities=20% Similarity=0.264 Sum_probs=214.9
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvf 140 (685)
...++|.+|.+|+++++ ++.||||||.. ...++++++||+.+++|..++++ |.+|.+|++++++++||||
T Consensus 38 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~-----~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~ 107 (306)
T 3ii7_A 38 DIRCPFEKRRDAACVFW---DNVVYILGGSQ-----LFPIKRMDCYNVVKDSWYSKLGP--PTPRDSLAACAAEGKIYTS 107 (306)
T ss_dssp ECCCCSCCCBSCEEEEE---TTEEEEECCBS-----SSBCCEEEEEETTTTEEEEEECC--SSCCBSCEEEEETTEEEEE
T ss_pred cCCCCCcccceeEEEEE---CCEEEEEeCCC-----CCCcceEEEEeCCCCeEEECCCC--CccccceeEEEECCEEEEE
Confidence 44678999999999999 89999999963 23678999999999999999774 6899999999999999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
||.... ...++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||.........+++++++||+.+++
T Consensus 108 GG~~~~-----~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 108 GGSEVG-----NSALYLFECYDTRTESWHTKPS--MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp CCBBTT-----BSCCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCCCCC-----CcEeeeEEEEeCCCCceEeCCC--CcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 998632 2357999999999999999987 899999999999999999999987654434568999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCccee
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~ 300 (685)
|+.++++ |.+|.+|++++++++|||+||+... ..++++++||+.+++|+.+.. +|.+|.+|
T Consensus 181 W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~ 241 (306)
T 3ii7_A 181 WTELCPM-----IEARKNHGLVFVKDKIFAVGGQNGL-----------GGLDNVEYYDIKLNEWKMVSP---MPWKGVTV 241 (306)
T ss_dssp EEEECCC-----SSCCBSCEEEEETTEEEEECCEETT-----------EEBCCEEEEETTTTEEEECCC---CSCCBSCC
T ss_pred EEECCCc-----cchhhcceEEEECCEEEEEeCCCCC-----------CCCceEEEeeCCCCcEEECCC---CCCCccce
Confidence 9999876 8899999999999999999998764 567899999999999999965 57899999
Q ss_pred EEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
++++++++||||||... ...++++++||+.+++|..++.
T Consensus 242 ~~~~~~~~i~v~GG~~~---------~~~~~~~~~yd~~~~~W~~~~~ 280 (306)
T 3ii7_A 242 KCAAVGSIVYVLAGFQG---------VGRLGHILEYNTETDKWVANSK 280 (306)
T ss_dssp EEEEETTEEEEEECBCS---------SSBCCEEEEEETTTTEEEEEEE
T ss_pred eEEEECCEEEEEeCcCC---------CeeeeeEEEEcCCCCeEEeCCC
Confidence 99999999999999864 2357899999999999999875
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-39 Score=336.73 Aligned_cols=239 Identities=19% Similarity=0.275 Sum_probs=210.5
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCc---EEEecCCCCCCCcceeEEEEECCEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPPRSAHQAVSWKNYL 137 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~---W~~l~s~~~P~~R~~ha~v~~~~~i 137 (685)
...++|.+|.+|++++. ++.||||||.. + ...++++++||+.+++ |+.++++ |.+|.+|++++++++|
T Consensus 45 ~~~~~p~~r~~~~~~~~---~~~l~v~GG~~--~--~~~~~~~~~~d~~~~~~~~W~~~~~~--p~~r~~~~~~~~~~~l 115 (301)
T 2vpj_A 45 FLPSITRKRRYVASVSL---HDRIYVIGGYD--G--RSRLSSVECLDYTADEDGVWYSVAPM--NVRRGLAGATTLGDMI 115 (301)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCBC--S--SCBCCCEEEEETTCCTTCCCEEECCC--SSCCBSCEEEEETTEE
T ss_pred eCCCCChhhccccEEEE---CCEEEEEcCCC--C--CccCceEEEEECCCCCCCeeEECCCC--CCCccceeEEEECCEE
Confidence 34568889999999998 89999999963 2 2367899999999999 9999764 6899999999999999
Q ss_pred EEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 138 yvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
|||||.... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||+|||+... .+++++++||+.
T Consensus 116 yv~GG~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~ 183 (301)
T 2vpj_A 116 YVSGGFDGS------RRHTSMERYDPNIDQWSMLGD--MQTAREGAGLVVASGVIYCLGGYDGL----NILNSVEKYDPH 183 (301)
T ss_dssp EEECCBCSS------CBCCEEEEEETTTTEEEEEEE--CSSCCBSCEEEEETTEEEEECCBCSS----CBCCCEEEEETT
T ss_pred EEEcccCCC------cccceEEEEcCCCCeEEECCC--CCCCcccceEEEECCEEEEECCCCCC----cccceEEEEeCC
Confidence 999998643 247899999999999999987 89999999999999999999998653 268999999999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCc
Q 005655 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (685)
Q Consensus 218 t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R 297 (685)
+++|+.+.++ |.+|.+|+++++++.|||+||.... ..++++++||+.+++|+.+.. +|.+|
T Consensus 184 ~~~W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~---~p~~r 244 (301)
T 2vpj_A 184 TGHWTNVTPM-----ATKRSGAGVALLNDHIYVVGGFDGT-----------AHLSSVEAYNIRTDSWTTVTS---MTTPR 244 (301)
T ss_dssp TTEEEEECCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEEECC---CSSCC
T ss_pred CCcEEeCCCC-----CcccccceEEEECCEEEEEeCCCCC-----------cccceEEEEeCCCCcEEECCC---CCCcc
Confidence 9999999776 8899999999999999999998765 347889999999999999965 47899
Q ss_pred ceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 298 ~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.+|++++++++||||||.... ..++++++||+.+++|..++.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~ 286 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDGN---------SLLSSIECYDPIIDSWEVVTS 286 (301)
T ss_dssp BSCEEEEETTEEEEECCBCSS---------SBEEEEEEEETTTTEEEEEEE
T ss_pred cceeEEEECCEEEEEcCcCCC---------cccccEEEEcCCCCeEEEcCC
Confidence 999999999999999997642 246899999999999998865
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-38 Score=367.53 Aligned_cols=243 Identities=13% Similarity=0.218 Sum_probs=203.1
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEec-CC---CCCCCcceeEEEEE--CCE
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SP---NSPPPRSAHQAVSW--KNY 136 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~-s~---~~P~~R~~ha~v~~--~~~ 136 (685)
..+|.+|.+|+++ + ++.||||||.. + ..++++++||+.+++|..++ ++ ..|.+|++|+++++ ++.
T Consensus 383 ~~~p~rr~g~~~~-~---~~~iyv~GG~~--~---~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~ 453 (695)
T 2zwa_A 383 ECPINRKFGDVDV-A---GNDVFYMGGSN--P---YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ 453 (695)
T ss_dssp CCTTCCBSCEEEE-C---SSCEEEECCBS--S---SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE
T ss_pred CCCCCCceeEEEE-E---CCEEEEECCCC--C---CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE
Confidence 4456677776655 5 78999999963 2 36789999999999999998 52 36899999999999 999
Q ss_pred EEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEE
Q 005655 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (685)
Q Consensus 137 iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD 215 (685)
||||||..... ..++++|+||+.+++|+.+++ +|.+|++|+++++ +++||||||+.... ++++||
T Consensus 454 lyv~GG~~~~~-----~~~~dv~~yd~~t~~W~~~~~--~p~~R~~h~~~~~~~~~iyv~GG~~~~~-------~v~~yd 519 (695)
T 2zwa_A 454 LLLIGGRKAPH-----QGLSDNWIFDMKTREWSMIKS--LSHTRFRHSACSLPDGNVLILGGVTEGP-------AMLLYN 519 (695)
T ss_dssp EEEECCBSSTT-----CBCCCCEEEETTTTEEEECCC--CSBCCBSCEEEECTTSCEEEECCBCSSC-------SEEEEE
T ss_pred EEEEcCCCCCC-----CccccEEEEeCCCCcEEECCC--CCCCcccceEEEEcCCEEEEECCCCCCC-------CEEEEE
Confidence 99999986542 257999999999999999987 8999999999997 99999999986532 899999
Q ss_pred cCCCceEEeccCCCCCCCCCccceeEEEeC---CEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce------eEE
Q 005655 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVYQ---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE------WSK 286 (685)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~------W~~ 286 (685)
+.+++|+.+.+. +.+|.+|++|++++++ ++|||+||+... ....++++|+||+.+++ |+.
T Consensus 520 ~~t~~W~~~~~~--g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~---------~~~~~~~v~~yd~~~~~w~~~~~W~~ 588 (695)
T 2zwa_A 520 VTEEIFKDVTPK--DEFFQNSLVSAGLEFDPVSKQGIILGGGFMD---------QTTVSDKAIIFKYDAENATEPITVIK 588 (695)
T ss_dssp TTTTEEEECCCS--SGGGGSCCBSCEEEEETTTTEEEEECCBCTT---------SSCBCCEEEEEEECTTCSSCCEEEEE
T ss_pred CCCCceEEccCC--CCCCCcccceeEEEEeCCCCEEEEECCcCCC---------CCeeeCcEEEEEccCCccccceEEEE
Confidence 999999999874 3458999999988875 899999998654 12567899999999999 898
Q ss_pred eecCCCCCCCcceeEEEEEC-CeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 287 VKKIGMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 287 ~~~~g~~P~~R~g~s~~~~~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
+..+ +|.+|.+|++++++ ++||||||...... ....+++++||+.+++|..+.
T Consensus 589 ~~~~--p~~~R~~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~v~~yd~~t~~W~~~~ 642 (695)
T 2zwa_A 589 KLQH--PLFQRYGSQIKYITPRKLLIVGGTSPSGL------FDRTNSIISLDPLSETLTSIP 642 (695)
T ss_dssp EEEC--GGGCCBSCEEEEEETTEEEEECCBCSSCC------CCTTTSEEEEETTTTEEEECC
T ss_pred cCCC--CCCCcccceEEEeCCCEEEEECCccCCCC------CCCCCeEEEEECCCCeEEEee
Confidence 8763 35799999999998 99999999864211 135799999999999999543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=315.95 Aligned_cols=264 Identities=17% Similarity=0.213 Sum_probs=204.5
Q ss_pred cCCCCC-CCCcceEEEEeccCCCEEEEEcCeec-CCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEE
Q 005655 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFY-NGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (685)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~p~~~~~L~vfGG~~~-~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (685)
...++| .+|.+|+++++ ++.||||||... .......++++++||+.+++|+.++++. |.+|.+|++++++++||
T Consensus 47 ~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iy 122 (357)
T 2uvk_A 47 ALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAY 122 (357)
T ss_dssp ECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEE
T ss_pred ECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEE
Confidence 445678 89999999999 899999999732 2223457899999999999999998876 79999999999999999
Q ss_pred EEcCccCCCC----------------------------CccccccCeEEEEECCCCcEEEcccCCCCCCC-ccceEEEEC
Q 005655 139 IFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR-SGHRMVLYK 189 (685)
Q Consensus 139 vfGG~~~s~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R-sgh~~v~~~ 189 (685)
||||...... ...+..++++++||+.+++|+.+.+ +|.+| .+|++++++
T Consensus 123 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~p~~~~~~~~~~~~~ 200 (357)
T 2uvk_A 123 VTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE--SPWYGTAGAAVVNKG 200 (357)
T ss_dssp EEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE--CSSCCCBSCEEEEET
T ss_pred EEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCC--CCCCCcccccEEEEC
Confidence 9999753210 0001246899999999999999987 77665 559999999
Q ss_pred CEEEEEccccCCCCceeeeceEEEEEc--CCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccC----
Q 005655 190 HKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN---- 263 (685)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~---- 263 (685)
++||||||....+ ...+++++||+ .+++|+.+..++. |.+|.+|++++++++|||+||+... ....
T Consensus 201 ~~iyv~GG~~~~~---~~~~~v~~~d~d~~~~~W~~~~~~~~---~~~~~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~ 272 (357)
T 2uvk_A 201 DKTWLINGEAKPG---LRTDAVFELDFTGNNLKWNKLAPVSS---PDGVAGGFAGISNDSLIFAGGAGFK--GSRENYQN 272 (357)
T ss_dssp TEEEEECCEEETT---EECCCEEEEECC---CEEEECCCSST---TTCCBSCEEEEETTEEEEECCEECT--THHHHHHT
T ss_pred CEEEEEeeecCCC---cccCceEEEEecCCCCcEEecCCCCC---CcccccceEEEECCEEEEEcCcccc--CCcccccc
Confidence 9999999986542 35789999987 8999999987732 5667789999999999999998642 0000
Q ss_pred -C---CCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECC
Q 005655 264 -Q---SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 264 -~---~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
. ......+.++++||+.+++|+.+.. +|.+|.+|++++++++||||||.+.. ...+++|++|++.
T Consensus 273 g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~--------~~~~~~v~~l~~~ 341 (357)
T 2uvk_A 273 GKNYAHEGLKKSYSTDIHLWHNGKWDKSGE---LSQGRAYGVSLPWNNSLLIIGGETAG--------GKAVTDSVLITVK 341 (357)
T ss_dssp TCSSTTTTCCCEECCEEEECC---CEEEEE---CSSCCBSSEEEEETTEEEEEEEECGG--------GCEEEEEEEEEC-
T ss_pred cceeccccccceeeEEEEecCCCceeeCCC---CCCCcccceeEEeCCEEEEEeeeCCC--------CCEeeeEEEEEEc
Confidence 0 0112345789999999999999975 47899999999999999999998652 2347999999999
Q ss_pred CCcEEEEEec
Q 005655 340 NHRWYPLELR 349 (685)
Q Consensus 340 t~~W~~l~~~ 349 (685)
+++|..+.+.
T Consensus 342 ~~~~~~~~~~ 351 (357)
T 2uvk_A 342 DNKVTVQNLE 351 (357)
T ss_dssp CCSCEEEC--
T ss_pred CcEeEeeecc
Confidence 9999987764
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=322.45 Aligned_cols=242 Identities=14% Similarity=0.153 Sum_probs=202.0
Q ss_pred CCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcc-c---CCCCCCCccceEEEE--CCEE
Q 005655 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN-L---KGCPSPRSGHRMVLY--KHKI 192 (685)
Q Consensus 119 ~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~-~---~g~P~~Rsgh~~v~~--~~~l 192 (685)
+..|.+|++|+++ +++.||||||... . .++++|+||+.+++|+.++ + ..+|.+|++|+++++ +++|
T Consensus 383 ~~~p~rr~g~~~~-~~~~iyv~GG~~~---~----~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l 454 (695)
T 2zwa_A 383 ECPINRKFGDVDV-AGNDVFYMGGSNP---Y----RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL 454 (695)
T ss_dssp CCTTCCBSCEEEE-CSSCEEEECCBSS---S----BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE
T ss_pred CCCCCCceeEEEE-ECCEEEEECCCCC---C----CcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE
Confidence 4456667666544 8999999999765 1 4689999999999999998 4 237999999999999 9999
Q ss_pred EEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCcee
Q 005655 193 IVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (685)
Q Consensus 193 yv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 271 (685)
|||||..... ..++++|+||+.+++|+.+.++ |.+|++|+++++ ++.|||+||+... .
T Consensus 455 yv~GG~~~~~---~~~~dv~~yd~~t~~W~~~~~~-----p~~R~~h~~~~~~~~~iyv~GG~~~~-----------~-- 513 (695)
T 2zwa_A 455 LLIGGRKAPH---QGLSDNWIFDMKTREWSMIKSL-----SHTRFRHSACSLPDGNVLILGGVTEG-----------P-- 513 (695)
T ss_dssp EEECCBSSTT---CBCCCCEEEETTTTEEEECCCC-----SBCCBSCEEEECTTSCEEEECCBCSS-----------C--
T ss_pred EEEcCCCCCC---CccccEEEEeCCCCcEEECCCC-----CCCcccceEEEEcCCEEEEECCCCCC-----------C--
Confidence 9999986543 2689999999999999999877 899999999996 9999999999765 1
Q ss_pred eeEEEEeCCCceeEEeecCCCCCCCcceeEEEEEC---CeEEEecceecccCCccccccccCCcEEEEECCCCc------
Q 005655 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR------ 342 (685)
Q Consensus 272 ~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~---~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~------ 342 (685)
++++||+.+++|+.+...+..|.+|.+|++++++ ++||||||..... ..+++++|+||+.+++
T Consensus 514 -~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~-------~~~~~~v~~yd~~~~~w~~~~~ 585 (695)
T 2zwa_A 514 -AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ-------TTVSDKAIIFKYDAENATEPIT 585 (695)
T ss_dssp -SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS-------SCBCCEEEEEEECTTCSSCCEE
T ss_pred -CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC-------CeeeCcEEEEEccCCccccceE
Confidence 8999999999999999877788999999988876 8999999985421 2457999999999999
Q ss_pred EEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeecccc
Q 005655 343 WYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGV 422 (685)
Q Consensus 343 W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (685)
|..+...
T Consensus 586 W~~~~~~------------------------------------------------------------------------- 592 (695)
T 2zwa_A 586 VIKKLQH------------------------------------------------------------------------- 592 (695)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred EEEcCCC-------------------------------------------------------------------------
Confidence 5554430
Q ss_pred ccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEec-CEEEEEcCeeeccCeeeeeecccccccCCCCccEEe
Q 005655 423 LAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGK-DTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (685)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~-~~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~w~~~ 499 (685)
.|.+|++|++++++ +.|||+||....+. ...++++|.||+.+ +.|+.+
T Consensus 593 ---------------------------p~~~R~~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~t-~~W~~~ 641 (695)
T 2zwa_A 593 ---------------------------PLFQRYGSQIKYITPRKLLIVGGTSPSGL-FDRTNSIISLDPLS-ETLTSI 641 (695)
T ss_dssp ---------------------------GGGCCBSCEEEEEETTEEEEECCBCSSCC-CCTTTSEEEEETTT-TEEEEC
T ss_pred ---------------------------CCCCcccceEEEeCCCEEEEECCccCCCC-CCCCCeEEEEECCC-CeEEEe
Confidence 25789999999999 99999999863331 13589999999998 899953
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=307.28 Aligned_cols=307 Identities=11% Similarity=0.019 Sum_probs=220.9
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCC--CceeeeccEEEEEcCCCcEEEecCCCCCCCccee--EEEE-ECCEEEEE
Q 005655 66 PSPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAH--QAVS-WKNYLYIF 140 (685)
Q Consensus 66 P~~R~~~s~~~~p~~~~~L~vfGG~~~~g--~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~h--a~v~-~~~~iyvf 140 (685)
|.||.+++++++|. +++||||||...+. ......+.+++||+.+++|+.++.++ .+|..| ++++ .+++|||+
T Consensus 183 ~~P~~~~~~av~~~-~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~--~~~~~~~~~~~~~~~g~lyv~ 259 (656)
T 1k3i_A 183 DLPIVPAAAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV--TKHDMFCPGISMDGNGQIVVT 259 (656)
T ss_dssp ECSSCCSEEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE--CSCCCSSCEEEECTTSCEEEE
T ss_pred cCCCCceeEEEEec-CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC--CCCCCccccccCCCCCCEEEe
Confidence 34556777777753 58999999964321 11123457999999999999887654 445444 3444 48999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
||... .++++||+.+++|+.++. ||.+|.+|+++++ +++||||||..... ..++++++||+.++
T Consensus 260 GG~~~----------~~v~~yd~~t~~W~~~~~--~~~~R~~~s~~~~~dg~iyv~GG~~~~~---~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 260 GGNDA----------KKTSLYDSSSDSWIPGPD--MQVARGYQSSATMSDGRVFTIGGSWSGG---VFEKNGEVYSPSSK 324 (656)
T ss_dssp CSSST----------TCEEEEEGGGTEEEECCC--CSSCCSSCEEEECTTSCEEEECCCCCSS---SCCCCEEEEETTTT
T ss_pred CCCCC----------CceEEecCcCCceeECCC--CCccccccceEEecCCeEEEEeCcccCC---cccccceEeCCCCC
Confidence 99743 379999999999999987 8999999999999 99999999954322 25789999999999
Q ss_pred ceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCC----CC
Q 005655 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP----PG 295 (685)
Q Consensus 220 ~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~----P~ 295 (685)
+|+.++.....+++.+|.. +++.+++.||++||.++... .....+++++||+.++.|......... +.
T Consensus 325 ~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~-------~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVF-------QAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp EEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEE-------ECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred cceeCCCcccccccccccc-ceeecCCceEEEECCCCcEE-------EecCccceeeeecCCcceeecCCccccccccCC
Confidence 9999854322222455543 55567999999999875410 012356899999999998864332111 11
Q ss_pred CcceeEEEE---ECCeEEEecceecccCCccccccccCC---cEEEEECCCCcEEEEEecCCCchhhhhccccccCCCch
Q 005655 296 PRAGFSMCV---HKKRALLFGGVVDMEMKGDVIMSLFLN---ELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369 (685)
Q Consensus 296 ~R~g~s~~~---~~~~iyvfGG~~~~~~~~~~~~~~~~n---dl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (685)
++..+++++ ++++||||||...... ...++ .|++||+.++.|..+.. .
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~------~~~~~~~~~v~~yd~~~~~W~~~~~-~------------------- 450 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQD------SDATTNAHIITLGEPGTSPNTVFAS-N------------------- 450 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSS------SBCCCCEEEEECCSTTSCCEEEECT-T-------------------
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCC------CCcCCcceEEEcCCCCCCCeeEEcc-C-------------------
Confidence 233444443 4899999999753211 12234 79999999999997651 0
Q ss_pred hhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCC
Q 005655 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIV 449 (685)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (685)
.
T Consensus 451 -------------------------------------------------------------------------------~ 451 (656)
T 1k3i_A 451 -------------------------------------------------------------------------------G 451 (656)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCCCCcceeeEEe-cCEEEEEcCeeecc--CeeeeeecccccccCCCCccEEeccCCh
Q 005655 450 KPCGRINSCMVVG-KDTLYVYGGMMEIN--DQEITLDDLYSLNLSKLDEWKCIIPASE 504 (685)
Q Consensus 450 ~P~~R~n~~~~v~-~~~Lyi~GG~~e~g--~re~tl~D~y~ldL~kld~w~~~~~~~~ 504 (685)
||.+|..|+++++ +++|||+||..... +....+++++.||+.+ +.|+.+..+..
T Consensus 452 mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t-~~W~~~~~~~~ 508 (656)
T 1k3i_A 452 LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ-DTFYKQNPNSI 508 (656)
T ss_dssp CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG-TEEEECCCCSS
T ss_pred CCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC-CceeecCCCCC
Confidence 7999999999888 99999999974210 1224589999999988 99999877644
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=295.77 Aligned_cols=257 Identities=10% Similarity=0.051 Sum_probs=182.4
Q ss_pred CCCCCCcce--EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEE
Q 005655 64 PAPSPRSNC--SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIF 140 (685)
Q Consensus 64 ~~P~~R~~~--s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvf 140 (685)
.+|.+|..| ++++.+ +++|||+||.. . +++++||+.+++|..++++ |.+|.+|+++++ +++|||+
T Consensus 236 ~~~~~~~~~~~~~~~~~--~g~lyv~GG~~--~------~~v~~yd~~t~~W~~~~~~--~~~R~~~s~~~~~dg~iyv~ 303 (656)
T 1k3i_A 236 VTVTKHDMFCPGISMDG--NGQIVVTGGND--A------KKTSLYDSSSDSWIPGPDM--QVARGYQSSATMSDGRVFTI 303 (656)
T ss_dssp EEECSCCCSSCEEEECT--TSCEEEECSSS--T------TCEEEEEGGGTEEEECCCC--SSCCSSCEEEECTTSCEEEE
T ss_pred ccCCCCCCccccccCCC--CCCEEEeCCCC--C------CceEEecCcCCceeECCCC--CccccccceEEecCCeEEEE
Confidence 355566544 355544 79999999952 1 2799999999999999764 689999999999 9999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCC---CCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG---CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g---~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
||..... ..++++++||+.+++|+.++..+ ++.+|. +++++++++||+|||..+........+++++||+.
T Consensus 304 GG~~~~~-----~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 304 GGSWSGG-----VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp CCCCCSS-----SCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred eCcccCC-----cccccceEeCCCCCcceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 9954322 24789999999999999985321 455554 35666799999999986532112246899999999
Q ss_pred CCceEEeccCCCCC--CCCCccceeEEE---eCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCC
Q 005655 218 QFKWQEIKPRFGSM--WPSPRSGFQFFV---YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (685)
Q Consensus 218 t~~W~~v~~~~~~~--~P~~Rs~~s~~~---~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~ 292 (685)
++.|.......... .+.++..++++. ++++|||+||.... .. .........+++||+.+++|..+. .+.
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~--~~---~~~~~~~~~v~~yd~~~~~W~~~~-~~~ 451 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY--QD---SDATTNAHIITLGEPGTSPNTVFA-SNG 451 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS--SS---SBCCCCEEEEECCSTTSCCEEEEC-TTC
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC--CC---CCcCCcceEEEcCCCCCCCeeEEc-cCC
Confidence 99987643321000 011233444443 48999999997532 00 000111237899999999999987 234
Q ss_pred CCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 293 PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 293 ~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
+|.+|.+|+++++ +++|||+||........ .....+++++||+.+++|..+.
T Consensus 452 mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~---~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 452 LYFARTFHTSVVLPDGSTFITGGQRRGIPFE---DSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp CSSCCBSCEEEECTTSCEEEECCBSBCCTTC---CCSBCCCCEEEEGGGTEEEECC
T ss_pred CCCCcccCCeEECCCCCEEEECCcccCcCcC---CCCcccceEEEcCCCCceeecC
Confidence 6889999999988 99999999975321000 1345789999999999999754
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0019 Score=64.91 Aligned_cols=162 Identities=16% Similarity=0.169 Sum_probs=109.8
Q ss_pred cceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCc
Q 005655 125 RSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204 (685)
Q Consensus 125 R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~ 204 (685)
-+-+.+...++.||+..|.... +.+.++|+.|++=..-.. +|..-.+.+++..+++||+....
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~---------S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~------ 83 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGR---------SSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR------ 83 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTS---------CEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS------
T ss_pred cccccEEEECCEEEEECCCCCC---------ceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee------
Confidence 3445667778999999996542 578999999997655444 56666888899999999998653
Q ss_pred eeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCcee
Q 005655 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (685)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (685)
.+.+++||+.+.+-.. .. |.+..|.+++..++.||+.-| + +.++++||.+.+-
T Consensus 84 ---~~~v~v~D~~tl~~~~--ti-----~~~~~Gwglt~dg~~L~vSdg-s----------------~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 84 ---NHEGFVYDLATLTPRA--RF-----RYPGEGWALTSDDSHLYMSDG-T----------------AVIRKLDPDTLQQ 136 (243)
T ss_dssp ---SSEEEEEETTTTEEEE--EE-----ECSSCCCEEEECSSCEEEECS-S----------------SEEEEECTTTCCE
T ss_pred ---CCEEEEEECCcCcEEE--EE-----eCCCCceEEeeCCCEEEEECC-C----------------CeEEEEeCCCCeE
Confidence 4789999998875433 22 223356777777888988765 3 2489999998765
Q ss_pred EEeecCCCCCCC-cceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 285 SKVKKIGMPPGP-RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 285 ~~~~~~g~~P~~-R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
...-..+..+.+ +.---+.+.+++||+--- ..++|.+.|+.+.+=.
T Consensus 137 ~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw--------------~s~~I~vIDp~tG~V~ 183 (243)
T 3mbr_X 137 VGSIKVTAGGRPLDNLNELEWVNGELLANVW--------------LTSRIARIDPASGKVV 183 (243)
T ss_dssp EEEEECEETTEECCCEEEEEEETTEEEEEET--------------TTTEEEEECTTTCBEE
T ss_pred EEEEEEccCCcccccceeeEEeCCEEEEEEC--------------CCCeEEEEECCCCCEE
Confidence 544332222222 111235566888774321 2578999999988643
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.019 Score=59.75 Aligned_cols=192 Identities=14% Similarity=0.065 Sum_probs=113.1
Q ss_pred ccEEEEEcCCCcEEEecC---CCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcE-EEcccCCC
Q 005655 101 GDLYRYDVEKQEWKVISS---PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW-EQLNLKGC 176 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s---~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W-~~~~~~g~ 176 (685)
+.|.+||+.++++...-. ...+.....+.+++.++++||.... .+.+.++|+.|.+- ..++.
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----------~~~v~viD~~t~~~~~~i~~--- 82 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----------SHVIFAIDINTFKEVGRITG--- 82 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----------GTEEEEEETTTCCEEEEEEC---
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----------CCEEEEEECcccEEEEEcCC---
Confidence 578999999998864210 0123444556777789999998752 25799999998876 33432
Q ss_pred CCCCccceEEE-ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEE-eccCCCCCCCCCccceeEEEeCCEEEEEec-
Q 005655 177 PSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVYQDEVFLYGG- 253 (685)
Q Consensus 177 P~~Rsgh~~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG- 253 (685)
...-+.+++ .+++||+...+ .+.|.+||+.+.+-.. ++... .... ...-+.+++.++.||+..-
T Consensus 83 --~~~p~~i~~~~~g~lyv~~~~---------~~~v~~iD~~t~~~~~~i~~g~-~~~~-~~~p~~i~~~~~~lyv~~~~ 149 (328)
T 3dsm_A 83 --FTSPRYIHFLSDEKAYVTQIW---------DYRIFIINPKTYEITGYIECPD-MDME-SGSTEQMVQYGKYVYVNCWS 149 (328)
T ss_dssp --CSSEEEEEEEETTEEEEEEBS---------CSEEEEEETTTTEEEEEEECTT-CCTT-TCBCCCEEEETTEEEEEECT
T ss_pred --CCCCcEEEEeCCCeEEEEECC---------CCeEEEEECCCCeEEEEEEcCC-cccc-CCCcceEEEECCEEEEEcCC
Confidence 122234444 57899997642 3679999999887543 32210 0000 0022244447889998852
Q ss_pred ccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCc
Q 005655 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (685)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~nd 332 (685)
.. +.+.++|+.+.+.......+..| +.+++. ++++|+.......... . ..-.+.
T Consensus 150 ~~----------------~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~---~-~~~~~~ 204 (328)
T 3dsm_A 150 YQ----------------NRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSP---Y-GYEAPS 204 (328)
T ss_dssp TC----------------CEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCS---S-CBCCCE
T ss_pred CC----------------CEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCc---c-ccCCce
Confidence 22 34889999988766554433322 233333 5787776532110000 0 000367
Q ss_pred EEEEECCCCcEE
Q 005655 333 LYGFQLDNHRWY 344 (685)
Q Consensus 333 l~~yd~~t~~W~ 344 (685)
|++||+.+.+..
T Consensus 205 v~~id~~t~~v~ 216 (328)
T 3dsm_A 205 LYRIDAETFTVE 216 (328)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCeEE
Confidence 999999887644
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.013 Score=61.66 Aligned_cols=198 Identities=11% Similarity=0.090 Sum_probs=109.1
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCCC-----CCcceeEEEEECCEEEEEcCccC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP-----PPRSAHQAVSWKNYLYIFGGEFT 145 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P-----~~R~~ha~v~~~~~iyvfGG~~~ 145 (685)
+.++. ++.||+.... +.|++||+.++ .|+.-.....+ ......+.++.++.||+...
T Consensus 48 ~p~v~---~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--- 111 (376)
T 3q7m_A 48 HPALA---DNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE--- 111 (376)
T ss_dssp CCEEE---TTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET---
T ss_pred ccEEE---CCEEEEEcCC----------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC---
Confidence 44555 7888887641 36899999876 47754322111 12233445556888988543
Q ss_pred CCCCccccccCeEEEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--e
Q 005655 146 SPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--W 221 (685)
Q Consensus 146 s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W 221 (685)
-..++.||..+++ |+.-... ......++.++.||+..+ ...|+.||+.+.+ |
T Consensus 112 ---------~g~l~a~d~~tG~~~W~~~~~~-----~~~~~p~~~~~~v~v~~~----------~g~l~~~d~~tG~~~W 167 (376)
T 3q7m_A 112 ---------KAQVYALNTSDGTVAWQTKVAG-----EALSRPVVSDGLVLIHTS----------NGQLQALNEADGAVKW 167 (376)
T ss_dssp ---------TSEEEEEETTTCCEEEEEECSS-----CCCSCCEEETTEEEEECT----------TSEEEEEETTTCCEEE
T ss_pred ---------CCEEEEEECCCCCEEEEEeCCC-----ceEcCCEEECCEEEEEcC----------CCeEEEEECCCCcEEE
Confidence 1469999998875 7653321 112233556787777443 2468999998765 8
Q ss_pred EEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCC--CCCCCc
Q 005655 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIG--MPPGPR 297 (685)
Q Consensus 222 ~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g--~~P~~R 297 (685)
..-...+. ...+...+.++.++.||+ |...+ .++.||+.+. .|+...... .....|
T Consensus 168 ~~~~~~~~---~~~~~~~~~~~~~~~v~~-g~~~g----------------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 227 (376)
T 3q7m_A 168 TVNLDMPS---LSLRGESAPTTAFGAAVV-GGDNG----------------RVSAVLMEQGQMIWQQRISQATGSTEIDR 227 (376)
T ss_dssp EEECCC--------CCCCCCEEETTEEEE-CCTTT----------------EEEEEETTTCCEEEEEECCC---------
T ss_pred EEeCCCCc---eeecCCCCcEEECCEEEE-EcCCC----------------EEEEEECCCCcEEEEEecccCCCCccccc
Confidence 76543310 111222344455776665 43322 3788888654 677643210 000001
Q ss_pred ---ceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCC--cEEE
Q 005655 298 ---AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (685)
Q Consensus 298 ---~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (685)
...+.++.++.+|+.+. ...|++||+.+. .|..
T Consensus 228 ~~~~~~~p~~~~~~v~~~~~---------------~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 228 LSDVDTTPVVVNGVVFALAY---------------NGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp --CCCCCCEEETTEEEEECT---------------TSCEEEEETTTCCEEEEE
T ss_pred ccccCCCcEEECCEEEEEec---------------CcEEEEEECCCCcEEeec
Confidence 22334556777777542 134889998766 5653
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.03 Score=58.87 Aligned_cols=185 Identities=15% Similarity=0.156 Sum_probs=103.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc--EEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.||+... .+.|++||+.+++ |+.-.... ...+.++.++.||+..+ -..+
T Consensus 103 ~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~-----~~~~p~~~~~~v~v~~~------------~g~l 155 (376)
T 3q7m_A 103 GGHVYIGSE----------KAQVYALNTSDGTVAWQTKVAGE-----ALSRPVVSDGLVLIHTS------------NGQL 155 (376)
T ss_dssp TTEEEEEET----------TSEEEEEETTTCCEEEEEECSSC-----CCSCCEEETTEEEEECT------------TSEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEEeCCCc-----eEcCCEEECCEEEEEcC------------CCeE
Confidence 677777543 1369999998774 76533211 12233455788887543 1468
Q ss_pred EEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC--ceEEeccCCCCCCCC
Q 005655 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPS 234 (685)
Q Consensus 159 ~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~ 234 (685)
+.||+.+++ |..-........+.....++.++.||+ |.. ...++.||+.+. .|+.-...+.+....
T Consensus 156 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~-g~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 225 (376)
T 3q7m_A 156 QALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVV-GGD---------NGRVSAVLMEQGQMIWQQRISQATGSTEI 225 (376)
T ss_dssp EEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEE-CCT---------TTEEEEEETTTCCEEEEEECCC-------
T ss_pred EEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEE-EcC---------CCEEEEEECCCCcEEEEEecccCCCCccc
Confidence 999998875 876543211112223344556777776 321 246889998765 476554331110000
Q ss_pred Cc---cceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCCCCcceeEEEEECCeE
Q 005655 235 PR---SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (685)
Q Consensus 235 ~R---s~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P~~R~g~s~~~~~~~i 309 (685)
.+ .....++.++.||+.+ +.+. +++||+.+. .|..... ...+.++.+++|
T Consensus 226 ~~~~~~~~~p~~~~~~v~~~~-~~g~----------------l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~l 280 (376)
T 3q7m_A 226 DRLSDVDTTPVVVNGVVFALA-YNGN----------------LTALDLRSGQIMWKRELG--------SVNDFIVDGNRI 280 (376)
T ss_dssp ----CCCCCCEEETTEEEEEC-TTSC----------------EEEEETTTCCEEEEECCC--------CEEEEEEETTEE
T ss_pred ccccccCCCcEEECCEEEEEe-cCcE----------------EEEEECCCCcEEeeccCC--------CCCCceEECCEE
Confidence 11 1233345577777754 3322 788998655 5765311 123456668888
Q ss_pred EEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
|+.... ..|++||+.+.+
T Consensus 281 ~~~~~~---------------g~l~~~d~~tG~ 298 (376)
T 3q7m_A 281 YLVDQN---------------DRVMALTIDGGV 298 (376)
T ss_dssp EEEETT---------------CCEEEEETTTCC
T ss_pred EEEcCC---------------CeEEEEECCCCc
Confidence 886532 349999988764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.012 Score=58.94 Aligned_cols=191 Identities=17% Similarity=0.160 Sum_probs=120.4
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCC
Q 005655 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPN 148 (685)
Q Consensus 69 R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~ 148 (685)
-+-+.+.+. ++.||+-+|.+ |. +.|.++|+.+++-..-.. .|..-++.+++..++.||+....
T Consensus 21 ~ftqGL~~~---~~~LyestG~~--g~-----S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~----- 83 (243)
T 3mbr_X 21 AFTEGLFYL---RGHLYESTGET--GR-----SSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR----- 83 (243)
T ss_dssp CCEEEEEEE---TTEEEEEECCT--TS-----CEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS-----
T ss_pred cccccEEEE---CCEEEEECCCC--CC-----ceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee-----
Confidence 344577777 68999999952 21 478999999997664332 23455678888889999998653
Q ss_pred CccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE-EeccC
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPR 227 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~ 227 (685)
-+.+++||+.|.+-..- .|.+..|.+++.-++.||+.-| .+.|+.+|+.+.+-. .+...
T Consensus 84 ------~~~v~v~D~~tl~~~~t----i~~~~~Gwglt~dg~~L~vSdg----------s~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 84 ------NHEGFVYDLATLTPRAR----FRYPGEGWALTSDDSHLYMSDG----------TAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp ------SSEEEEEETTTTEEEEE----EECSSCCCEEEECSSCEEEECS----------SSEEEEECTTTCCEEEEEECE
T ss_pred ------CCEEEEEECCcCcEEEE----EeCCCCceEEeeCCCEEEEECC----------CCeEEEEeCCCCeEEEEEEEc
Confidence 36799999988764332 1223467777777888999755 367999999997643 23322
Q ss_pred CCCCCCCCccc-eeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC-CCC--------CCc
Q 005655 228 FGSMWPSPRSG-FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MPP--------GPR 297 (685)
Q Consensus 228 ~~~~~P~~Rs~-~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g-~~P--------~~R 297 (685)
.. +.+... -.+...++.||+--.. .+++.+.||.+.+-...-..+ ..| ..-
T Consensus 144 ~~---g~~~~~lNeLe~~~G~lyanvw~----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~ 204 (243)
T 3mbr_X 144 AG---GRPLDNLNELEWVNGELLANVWL----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTND 204 (243)
T ss_dssp ET---TEECCCEEEEEEETTEEEEEETT----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSS
T ss_pred cC---CcccccceeeEEeCCEEEEEECC----------------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCC
Confidence 11 222211 2334458888854322 246889999887544432221 111 112
Q ss_pred ceeEEEEE--CCeEEEecce
Q 005655 298 AGFSMCVH--KKRALLFGGV 315 (685)
Q Consensus 298 ~g~s~~~~--~~~iyvfGG~ 315 (685)
.--++++. ++++||.|-.
T Consensus 205 vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 205 VLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp CEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEECCC
Confidence 33456665 6889998865
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.033 Score=57.82 Aligned_cols=207 Identities=13% Similarity=0.077 Sum_probs=119.4
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEE-ECCEEEEEcCccC
Q 005655 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVS-WKNYLYIFGGEFT 145 (685)
Q Consensus 68 ~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~-~~~~iyvfGG~~~ 145 (685)
....+.+++. +++|||.... .+.+.++|+.+.+-. .++.. ..-+.+++ -+++|||....
T Consensus 43 g~~~~~i~~~---~~~lyv~~~~---------~~~v~viD~~t~~~~~~i~~~-----~~p~~i~~~~~g~lyv~~~~-- 103 (328)
T 3dsm_A 43 GDVAQSMVIR---DGIGWIVVNN---------SHVIFAIDINTFKEVGRITGF-----TSPRYIHFLSDEKAYVTQIW-- 103 (328)
T ss_dssp BSCEEEEEEE---TTEEEEEEGG---------GTEEEEEETTTCCEEEEEECC-----SSEEEEEEEETTEEEEEEBS--
T ss_pred CccceEEEEE---CCEEEEEEcC---------CCEEEEEECcccEEEEEcCCC-----CCCcEEEEeCCCeEEEEECC--
Confidence 3444566666 7889988751 257899999988763 45322 12234444 57899998742
Q ss_pred CCCCccccccCeEEEEECCCCcEEE-cccCCCC-CCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEE
Q 005655 146 SPNQERFHHYKDFWMLDLKTNQWEQ-LNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (685)
Q Consensus 146 s~~~~~~~~~~dv~~yD~~t~~W~~-~~~~g~P-~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (685)
-+.+.+||+.+++-.. ++..... ....-+.+++.+++||+..-- ..+.|.+||+.+.+...
T Consensus 104 ---------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~--------~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 104 ---------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS--------YQNRILKIDTETDKVVD 166 (328)
T ss_dssp ---------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT--------TCCEEEEEETTTTEEEE
T ss_pred ---------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC--------CCCEEEEEECCCCeEEE
Confidence 2579999999987543 3321100 001334555678899997420 13679999999987654
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEE
Q 005655 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (685)
Q Consensus 224 v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~ 302 (685)
.-.. + ..| +.++.. ++.+|+....... . .........++++|+.+.+....-.. |....-..+
T Consensus 167 ~i~~--g--~~p---~~i~~~~dG~l~v~~~~~~~--~----~~~~~~~~~v~~id~~t~~v~~~~~~---~~g~~p~~l 230 (328)
T 3dsm_A 167 ELTI--G--IQP---TSLVMDKYNKMWTITDGGYE--G----SPYGYEAPSLYRIDAETFTVEKQFKF---KLGDWPSEV 230 (328)
T ss_dssp EEEC--S--SCB---CCCEECTTSEEEEEBCCBCT--T----CSSCBCCCEEEEEETTTTEEEEEEEC---CTTCCCEEE
T ss_pred EEEc--C--CCc---cceEEcCCCCEEEEECCCcc--C----CccccCCceEEEEECCCCeEEEEEec---CCCCCceeE
Confidence 3222 1 112 233333 6787776532211 0 00000135699999998876643321 222223455
Q ss_pred EEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 303 CVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 303 ~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
++. ++++|+..+ .|++||+.+.+.
T Consensus 231 a~~~d~~~lyv~~~-----------------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 231 QLNGTRDTLYWINN-----------------DIWRMPVEADRV 256 (328)
T ss_dssp EECTTSCEEEEESS-----------------SEEEEETTCSSC
T ss_pred EEecCCCEEEEEcc-----------------EEEEEECCCCce
Confidence 555 567777543 489999987653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.035 Score=56.42 Aligned_cols=202 Identities=12% Similarity=0.034 Sum_probs=120.1
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~ 150 (685)
-+.+.+.| ++.||+..|.+ + .+.|.++|+.+++-...... +....+++++..++.||+..-.
T Consensus 23 ~~Gl~~~~--dg~Lyvstg~~--~-----~s~v~~iD~~tg~v~~~i~l--~~~~fgeGi~~~g~~lyv~t~~------- 84 (266)
T 2iwa_A 23 TQGLVYAE--NDTLFESTGLY--G-----RSSVRQVALQTGKVENIHKM--DDSYFGEGLTLLNEKLYQVVWL------- 84 (266)
T ss_dssp EEEEEECS--TTEEEEEECST--T-----TCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEETT-------
T ss_pred cccEEEeC--CCeEEEECCCC--C-----CCEEEEEECCCCCEEEEEec--CCCcceEEEEEeCCEEEEEEec-------
Confidence 36788775 47999987742 1 14799999999876533221 2334566777889999998642
Q ss_pred cccccCeEEEEECCCCcEE-EcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE-EeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~-~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~ 228 (685)
-+.+++||+.|.+=. .++. + .-.+.+++.-++++|+.-| .+.|+.+|+.+++-. .+....
T Consensus 85 ----~~~v~viD~~t~~v~~~i~~---g-~~~g~glt~Dg~~l~vs~g----------s~~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 85 ----KNIGFIYDRRTLSNIKNFTH---Q-MKDGWGLATDGKILYGSDG----------TSILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp ----CSEEEEEETTTTEEEEEEEC---C-SSSCCEEEECSSSEEEECS----------SSEEEEECTTTCCEEEEEECEE
T ss_pred ----CCEEEEEECCCCcEEEEEEC---C-CCCeEEEEECCCEEEEECC----------CCeEEEEECCCCcEEEEEEECC
Confidence 267999999876532 2332 1 1234555555678998654 368999999987633 333221
Q ss_pred CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecC-CC--------CCCCcce
Q 005655 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-GM--------PPGPRAG 299 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~-g~--------~P~~R~g 299 (685)
. ..|..+ -..+...++.||+--.. .+.+.+.|+.+.+-...-.. +. .|..-.-
T Consensus 147 ~-~~p~~~-~nele~~dg~lyvn~~~----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~ 208 (266)
T 2iwa_A 147 N-GHRVIR-LNELEYINGEVWANIWQ----------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVL 208 (266)
T ss_dssp T-TEECCC-EEEEEEETTEEEEEETT----------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCE
T ss_pred C-Cccccc-ceeEEEECCEEEEecCC----------------CCeEEEEECCCCcEEEEEECCCcccccccccccccCce
Confidence 0 001111 12333447788765332 24699999988754333221 11 1111123
Q ss_pred eEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 300 ~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
.++++. ++++||.|+.. +.|+..++..
T Consensus 209 nGIa~~~~~~~lfVTgk~~--------------~~v~~i~l~~ 237 (266)
T 2iwa_A 209 NGIAWDQENKRIFVTGKLW--------------PKLFEIKLHL 237 (266)
T ss_dssp EEEEEETTTTEEEEEETTC--------------SEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEECCCC--------------CeEEEEEEec
Confidence 556665 56899998763 5577777543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.029 Score=56.82 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=116.7
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~ 150 (685)
-..+.+. ++.||+-.|.+ + .+.|.++|+.+++-..-.. .|..-++.+++..++.||+....
T Consensus 45 tqGL~~~---~~~LyestG~~--g-----~S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~------- 105 (262)
T 3nol_A 45 TEGFFYR---NGYFYESTGLN--G-----RSSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK------- 105 (262)
T ss_dssp EEEEEEE---TTEEEEEEEET--T-----EEEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS-------
T ss_pred cceEEEE---CCEEEEECCCC--C-----CceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee-------
Confidence 3566666 68999998852 2 2478899999987653322 23344667788889999999653
Q ss_pred cccccCeEEEEECCCCcEE-EcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE-EeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~-~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~ 228 (685)
-+.+++||+.|.+-. .++. +-.|.+++.-++.||+.-| .+.++.+|+.+.+-. .+....
T Consensus 106 ----~~~v~v~D~~t~~~~~ti~~-----~~eG~glt~dg~~L~~SdG----------s~~i~~iDp~T~~v~~~I~V~~ 166 (262)
T 3nol_A 106 ----NGLGFVWNIRNLRQVRSFNY-----DGEGWGLTHNDQYLIMSDG----------TPVLRFLDPESLTPVRTITVTA 166 (262)
T ss_dssp ----SSEEEEEETTTCCEEEEEEC-----SSCCCCEEECSSCEEECCS----------SSEEEEECTTTCSEEEEEECEE
T ss_pred ----CCEEEEEECccCcEEEEEEC-----CCCceEEecCCCEEEEECC----------CCeEEEEcCCCCeEEEEEEecc
Confidence 267999999887643 3332 3366777777778888755 357999999987643 333221
Q ss_pred CCCCCCCccce-eEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC-CC-------CCCcce
Q 005655 229 GSMWPSPRSGF-QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MP-------PGPRAG 299 (685)
Q Consensus 229 ~~~~P~~Rs~~-s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g-~~-------P~~R~g 299 (685)
. +.+.... .+...++.||+---. .+.+.+.||.+.+-...-... .. |..-.-
T Consensus 167 ~---g~~~~~lNELe~~~G~lyan~w~----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vl 227 (262)
T 3nol_A 167 H---GEELPELNELEWVDGEIFANVWQ----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVL 227 (262)
T ss_dssp T---TEECCCEEEEEEETTEEEEEETT----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred C---CccccccceeEEECCEEEEEEcc----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCce
Confidence 0 1111111 234448888864322 346899999987654443321 11 111233
Q ss_pred eEEEEE--CCeEEEecce
Q 005655 300 FSMCVH--KKRALLFGGV 315 (685)
Q Consensus 300 ~s~~~~--~~~iyvfGG~ 315 (685)
.++|+. .+++||.|-.
T Consensus 228 NGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 228 NGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEcCCCCEEEEECCC
Confidence 556665 5789988865
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.017 Score=58.60 Aligned_cols=185 Identities=15% Similarity=0.095 Sum_probs=113.9
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~ 150 (685)
...+.+. ++.||+-.|. ++.|.+||+.+++-..-. .|..-++.+++..++.||+....
T Consensus 57 tqGL~~~---~~~Ly~stG~---------~g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~------- 114 (268)
T 3nok_A 57 TQGLVFH---QGHFFESTGH---------QGTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT------- 114 (268)
T ss_dssp EEEEEEE---TTEEEEEETT---------TTEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS-------
T ss_pred cceEEEE---CCEEEEEcCC---------CCEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc-------
Confidence 3566666 7899999984 234889999988654322 23344667788889999998653
Q ss_pred cccccCeEEEEECCCCcEE-EcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEE-eccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~-~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~ 228 (685)
-+.+++||+.|.+-. .++. +-.|.+++.-++.||+.-| .+.++.+|+.+.+-.. +....
T Consensus 115 ----~~~v~V~D~~Tl~~~~ti~~-----~~eGwGLt~Dg~~L~vSdG----------s~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 115 ----EGLLFTWSGMPPQRERTTRY-----SGEGWGLCYWNGKLVRSDG----------GTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp ----SCEEEEEETTTTEEEEEEEC-----SSCCCCEEEETTEEEEECS----------SSEEEEECTTTCCEEEEEECEE
T ss_pred ----CCEEEEEECCcCcEEEEEeC-----CCceeEEecCCCEEEEECC----------CCEEEEEcCCCCeEEEEEEeCC
Confidence 267999999887644 3332 3346777777889999865 3689999999876433 32221
Q ss_pred CCCCCCCccc-eeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC---------CCCCCcc
Q 005655 229 GSMWPSPRSG-FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---------MPPGPRA 298 (685)
Q Consensus 229 ~~~~P~~Rs~-~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g---------~~P~~R~ 298 (685)
. +.+... -.+...++.||+---. .+.+.+.||.+.+-...-..+ ..+..-.
T Consensus 176 ~---g~~v~~lNeLe~~dG~lyanvw~----------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v 236 (268)
T 3nok_A 176 R---GQPVELINELECANGVIYANIWH----------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV 236 (268)
T ss_dssp T---TEECCCEEEEEEETTEEEEEETT----------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC
T ss_pred C---CcccccccccEEeCCEEEEEECC----------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc
Confidence 0 112111 1233447887753211 346899999887544332221 1111122
Q ss_pred eeEEEEE--CCeEEEecce
Q 005655 299 GFSMCVH--KKRALLFGGV 315 (685)
Q Consensus 299 g~s~~~~--~~~iyvfGG~ 315 (685)
--++|+. ++++||.|-.
T Consensus 237 lNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 237 LNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEEECTTTCCEEEEETT
T ss_pred eEEEEEcCCCCEEEEeCCC
Confidence 3455555 5789988854
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0077 Score=61.00 Aligned_cols=159 Identities=11% Similarity=0.038 Sum_probs=103.2
Q ss_pred eEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceee
Q 005655 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRY 207 (685)
Q Consensus 128 ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~ 207 (685)
..+...++.||+..|.... +.+.++|+.|++=..--+ ++..-.+.+++..+++||+....
T Consensus 46 qGL~~~~~~LyestG~~g~---------S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~--------- 105 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGR---------SSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK--------- 105 (262)
T ss_dssp EEEEEETTEEEEEEEETTE---------EEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS---------
T ss_pred ceEEEECCEEEEECCCCCC---------ceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee---------
Confidence 4455558999999986432 578899999997654433 45555678889999999998653
Q ss_pred eceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
.+.+++||+.+.+-..- . +.+-.|.+++..++.||+.-| + +.++++||.+.+-...
T Consensus 106 ~~~v~v~D~~t~~~~~t--i-----~~~~eG~glt~dg~~L~~SdG-s----------------~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRS--F-----NYDGEGWGLTHNDQYLIMSDG-T----------------PVLRFLDPESLTPVRT 161 (262)
T ss_dssp SSEEEEEETTTCCEEEE--E-----ECSSCCCCEEECSSCEEECCS-S----------------SEEEEECTTTCSEEEE
T ss_pred CCEEEEEECccCcEEEE--E-----ECCCCceEEecCCCEEEEECC-C----------------CeEEEEcCCCCeEEEE
Confidence 46899999988764322 2 222356667766778888765 2 2489999998765443
Q ss_pred ecCCCCCCCcce-eEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 288 KKIGMPPGPRAG-FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 288 ~~~g~~P~~R~g-~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
-..+..+.+... --+.+.+++||+-- ...+.|.+.|+.+.+=.
T Consensus 162 I~V~~~g~~~~~lNELe~~~G~lyan~--------------w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWVDGEIFANV--------------WQTNKIVRIDPETGKVT 205 (262)
T ss_dssp EECEETTEECCCEEEEEEETTEEEEEE--------------TTSSEEEEECTTTCBEE
T ss_pred EEeccCCccccccceeEEECCEEEEEE--------------ccCCeEEEEECCCCcEE
Confidence 222111111111 12455688877421 12578999999988643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.024 Score=57.67 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=100.8
Q ss_pred eeEEEEEC-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCce
Q 005655 127 AHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205 (685)
Q Consensus 127 ~ha~v~~~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~ 205 (685)
-|.+++.+ +.||+..|... -+.+.++|+.|++=..--+ ++....+++++..++.||+..-.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~---------~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~~------- 84 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYG---------RSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVWL------- 84 (266)
T ss_dssp EEEEEECSTTEEEEEECSTT---------TCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEETT-------
T ss_pred cccEEEeCCCeEEEECCCCC---------CCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEec-------
Confidence 36666665 89999877422 2679999999998654333 34445667788889999998542
Q ss_pred eeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeE
Q 005655 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (685)
Q Consensus 206 ~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (685)
.+.+++||+.+.+= +...+.+ . -.+.+++..++.+|+.-| + +.++++|+.+.+-.
T Consensus 85 --~~~v~viD~~t~~v--~~~i~~g-~---~~g~glt~Dg~~l~vs~g-s----------------~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 85 --KNIGFIYDRRTLSN--IKNFTHQ-M---KDGWGLATDGKILYGSDG-T----------------SILYEIDPHTFKLI 139 (266)
T ss_dssp --CSEEEEEETTTTEE--EEEEECC-S---SSCCEEEECSSSEEEECS-S----------------SEEEEECTTTCCEE
T ss_pred --CCEEEEEECCCCcE--EEEEECC-C---CCeEEEEECCCEEEEECC-C----------------CeEEEEECCCCcEE
Confidence 46899999987643 3223111 1 234555555778888754 2 34899999887654
Q ss_pred EeecCCCCCCCc-ceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 286 KVKKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 286 ~~~~~g~~P~~R-~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
..-..+..+.+. .-..+.+.++++|+--. ..+.|.+.|+.+++=
T Consensus 140 ~~I~Vg~~~~p~~~~nele~~dg~lyvn~~--------------~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 140 KKHNVKYNGHRVIRLNELEYINGEVWANIW--------------QTDCIARISAKDGTL 184 (266)
T ss_dssp EEEECEETTEECCCEEEEEEETTEEEEEET--------------TSSEEEEEETTTCCE
T ss_pred EEEEECCCCcccccceeEEEECCEEEEecC--------------CCCeEEEEECCCCcE
Confidence 443322211111 12244455888775422 147899999998753
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.011 Score=62.13 Aligned_cols=185 Identities=12% Similarity=0.032 Sum_probs=104.1
Q ss_pred CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEE
Q 005655 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~ 159 (685)
..||+.|+. -+.|++||+.+++........ ..-++++.. +..||+.|+.. +.+.
T Consensus 2 ~~l~vs~~~---------d~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~d-----------~~i~ 57 (391)
T 1l0q_A 2 TFAYIANSE---------SDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHS-----------NDVS 57 (391)
T ss_dssp EEEEEEETT---------TTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGGG-----------TEEE
T ss_pred CEEEEEcCC---------CCEEEEEECCCCeEEEEeecC----CCcceEEECCCCCEEEEECCCC-----------CeEE
Confidence 467777762 146899999988655332211 112333333 34677777542 4688
Q ss_pred EEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcc
Q 005655 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (685)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs 237 (685)
+||+.+++....-. .+. .-++++.. +++||+.|.. ...|++||+.+.+....-.. .. .
T Consensus 58 v~d~~~~~~~~~~~--~~~--~v~~~~~spdg~~l~~~~~~---------~~~v~v~d~~~~~~~~~~~~-----~~--~ 117 (391)
T 1l0q_A 58 IIDTATNNVIATVP--AGS--SPQGVAVSPDGKQVYVTNMA---------SSTLSVIDTTSNTVAGTVKT-----GK--S 117 (391)
T ss_dssp EEETTTTEEEEEEE--CSS--SEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC-----SS--S
T ss_pred EEECCCCeEEEEEE--CCC--CccceEECCCCCEEEEEECC---------CCEEEEEECCCCeEEEEEeC-----CC--C
Confidence 99998887654433 121 22233332 3456665442 25699999998765544332 11 1
Q ss_pred ceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C-CeEEEec
Q 005655 238 GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K-KRALLFG 313 (685)
Q Consensus 238 ~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~-~~iyvfG 313 (685)
-.+++.. +..||+.++..+. +++||+.+.+.......+. .-.++++. + ..+|+.+
T Consensus 118 ~~~~~~s~dg~~l~~~~~~~~~----------------v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 118 PLGLALSPDGKKLYVTNNGDKT----------------VSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTE----------------EEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCE----------------EEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEe
Confidence 2333333 4567777765443 8899998877665543221 12344444 3 3565655
Q ss_pred ceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
+.. +.|++||+.+.....
T Consensus 177 ~~~--------------~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 177 FDS--------------MSISVIDTVTNSVID 194 (391)
T ss_dssp TTT--------------TEEEEEETTTTEEEE
T ss_pred CCC--------------CEEEEEECCCCeEEE
Confidence 432 459999998876543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.023 Score=56.10 Aligned_cols=215 Identities=10% Similarity=0.042 Sum_probs=111.5
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCC-CcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK-QEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~-~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~ 148 (685)
-.++...| ++.++++++. ..+++||+.+ .....+.... ....-.+++.. ++..+++++....
T Consensus 44 v~~~~~sp--dg~~l~~~~~----------~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~-- 107 (297)
T 2ojh_A 44 FEAPNWSP--DGKYLLLNSE----------GLLYRLSLAGDPSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEF-- 107 (297)
T ss_dssp CEEEEECT--TSSEEEEEET----------TEEEEEESSSCCSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTT--
T ss_pred eEeeEECC--CCCEEEEEcC----------CeEEEEeCCCCCCceEecccc--ccccccceEECCCCCEEEEEEeCCC--
Confidence 34556666 5666666641 3689999998 8777665332 11222222333 4555555553221
Q ss_pred CccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
....+|.+++.+.....+... . . .+ .+.+ ++ +|++.++... ...+|.+++.+.....+.
T Consensus 108 -----~~~~l~~~~~~~~~~~~~~~~--~-~--~~-~~~~spdg~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 108 -----GKSAIYLLPSTGGTPRLMTKN--L-P--SY-WHGWSPDGKSFTYCGIRDQ-------VFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp -----SSCEEEEEETTCCCCEECCSS--S-S--EE-EEEECTTSSEEEEEEEETT-------EEEEEEEETTTCCEEECC
T ss_pred -----CcceEEEEECCCCceEEeecC--C-C--cc-ceEECCCCCEEEEEECCCC-------ceEEEEEECCCCcceEcc
Confidence 136799999988876665441 1 1 22 2233 34 4554454321 246888888877766554
Q ss_pred cCCCCCCCCCccceeEEEe-CCE-EEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEE
Q 005655 226 PRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (685)
Q Consensus 226 ~~~~~~~P~~Rs~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~ 303 (685)
.. +... .++... ++. |++.+.... ...+|.+++.......+... .....+++
T Consensus 170 ~~-----~~~~--~~~~~s~dg~~l~~~~~~~~--------------~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~ 223 (297)
T 2ojh_A 170 HG-----EGRN--DGPDYSPDGRWIYFNSSRTG--------------QMQIWRVRVDGSSVERITDS-----AYGDWFPH 223 (297)
T ss_dssp CS-----SSCE--EEEEECTTSSEEEEEECTTS--------------SCEEEEEETTSSCEEECCCC-----SEEEEEEE
T ss_pred cC-----CCcc--ccceECCCCCEEEEEecCCC--------------CccEEEECCCCCCcEEEecC-----CcccCCeE
Confidence 33 1111 222222 444 444443332 23588888777666655321 11122233
Q ss_pred EE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 304 ~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+. +++.+++++....... ........|++||+.+.....+..
T Consensus 224 ~s~dg~~l~~~~~~~~~~~---~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFD---HPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp ECTTSSEEEEEEEETTCCS---CCSSEEEEEEEEETTSCSCEEEEE
T ss_pred ECCCCCEEEEEEcCCCCCc---ccccCceEEEEEecCCCCceeeec
Confidence 32 5666666655421100 000012569999999887765543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.032 Score=60.08 Aligned_cols=207 Identities=11% Similarity=0.009 Sum_probs=114.9
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CC-EEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KN-YLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~-~iyvfGG~~~s~~~~ 150 (685)
++...| ++..+++++. ++. ...++++|+.+++...+.... ....+++.. ++ .|++.+....
T Consensus 183 ~~~~Sp--dg~~la~~s~--~~~----~~~i~~~d~~tg~~~~l~~~~----~~~~~~~~spdg~~la~~~~~~g----- 245 (415)
T 2hqs_A 183 SPAWSP--DGSKLAYVTF--ESG----RSALVIQTLANGAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG----- 245 (415)
T ss_dssp EEEECT--TSSEEEEEEC--TTS----SCEEEEEETTTCCEEEEECCS----SCEEEEEECTTSSEEEEEECTTS-----
T ss_pred eeEEcC--CCCEEEEEEe--cCC----CcEEEEEECCCCcEEEeecCC----CcccCEEEcCCCCEEEEEEecCC-----
Confidence 344555 4555555552 111 147899999999887765432 122233333 34 4554444321
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
...+|++|+.++....+.. .+ .....+.+ ++..+++++..+. ...||++|+.+..-..+...
T Consensus 246 ----~~~i~~~d~~~~~~~~l~~--~~---~~~~~~~~spdg~~l~~~s~~~g------~~~i~~~d~~~~~~~~l~~~- 309 (415)
T 2hqs_A 246 ----SLNLYVMDLASGQIRQVTD--GR---SNNTEPTWFPDSQNLAFTSDQAG------RPQVYKVNINGGAPQRITWE- 309 (415)
T ss_dssp ----SCEEEEEETTTCCEEECCC--CS---SCEEEEEECTTSSEEEEEECTTS------SCEEEEEETTSSCCEECCCS-
T ss_pred ----CceEEEEECCCCCEEeCcC--CC---CcccceEECCCCCEEEEEECCCC------CcEEEEEECCCCCEEEEecC-
Confidence 2579999999988776654 11 12223344 4555555543211 24799999988765554332
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~ 306 (685)
.....+++.. ++..+++++.... ...++++|+.+.....+... . ...++++. +
T Consensus 310 ------~~~~~~~~~spdG~~l~~~~~~~g-------------~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~spd 364 (415)
T 2hqs_A 310 ------GSQNQDADVSSDGKFMVMVSSNGG-------------QQHIAKQDLATGGVQVLSST-----F-LDETPSLAPN 364 (415)
T ss_dssp ------SSEEEEEEECTTSSEEEEEEECSS-------------CEEEEEEETTTCCEEECCCS-----S-SCEEEEECTT
T ss_pred ------CCcccCeEECCCCCEEEEEECcCC-------------ceEEEEEECCCCCEEEecCC-----C-CcCCeEEcCC
Confidence 1122223333 5555555543211 24589999998887655431 1 22333333 6
Q ss_pred CeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
++.+++++.... ...||++|+.+.....+..
T Consensus 365 g~~l~~~s~~~~-----------~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 365 GTMVIYSSSQGM-----------GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp SSEEEEEEEETT-----------EEEEEEEETTSCCEEECCC
T ss_pred CCEEEEEEcCCC-----------ccEEEEEECCCCcEEEeeC
Confidence 777777775431 2369999998877776654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.04 Score=57.76 Aligned_cols=195 Identities=13% Similarity=0.043 Sum_probs=106.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
.++.+.|. +..||+.|+. -+.+++||+.+++........ ..-++++.. +..||+.|..
T Consensus 35 ~~~~~s~d-g~~l~~~~~~---------d~~i~v~d~~~~~~~~~~~~~----~~v~~~~~spdg~~l~~~~~~------ 94 (391)
T 1l0q_A 35 MGAVISPD-GTKVYVANAH---------SNDVSIIDTATNNVIATVPAG----SSPQGVAVSPDGKQVYVTNMA------ 94 (391)
T ss_dssp EEEEECTT-SSEEEEEEGG---------GTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETT------
T ss_pred ceEEECCC-CCEEEEECCC---------CCeEEEEECCCCeEEEEEECC----CCccceEECCCCCEEEEEECC------
Confidence 45666662 3456676652 146899999888765432221 122333333 3456666542
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
-+.+++||+.++....... . ...-++++.. ++.||+.++. .+.|++||+.+.+....-..
T Consensus 95 -----~~~v~v~d~~~~~~~~~~~--~--~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 95 -----SSTLSVIDTTSNTVAGTVK--T--GKSPLGLALSPDGKKLYVTNNG---------DKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp -----TTEEEEEETTTTEEEEEEE--C--SSSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC
T ss_pred -----CCEEEEEECCCCeEEEEEe--C--CCCcceEEECCCCCEEEEEeCC---------CCEEEEEECCCCcEEEEEec
Confidence 1469999999887654433 1 1122333333 3467776653 25789999988776554332
Q ss_pred CCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE
Q 005655 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
.. .-..++.. +..||+.++..+. +++||+.+......... ...-.++++.
T Consensus 157 -----~~--~~~~~~~~~dg~~l~~~~~~~~~----------------v~~~d~~~~~~~~~~~~-----~~~~~~~~~~ 208 (391)
T 1l0q_A 157 -----GR--SPKGIAVTPDGTKVYVANFDSMS----------------ISVIDTVTNSVIDTVKV-----EAAPSGIAVN 208 (391)
T ss_dssp -----CS--SEEEEEECTTSSEEEEEETTTTE----------------EEEEETTTTEEEEEEEC-----SSEEEEEEEC
T ss_pred -----CC--CcceEEECCCCCEEEEEeCCCCE----------------EEEEECCCCeEEEEEec-----CCCccceEEC
Confidence 11 11233333 4567777665433 88899988765544321 1122233333
Q ss_pred -CCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
+++.+++++... .-+.|++||+.+..-
T Consensus 209 ~~g~~l~~~~~~~-----------~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 209 PEGTKAYVTNVDK-----------YFNTVSMIDTGTNKI 236 (391)
T ss_dssp TTSSEEEEEEECS-----------SCCEEEEEETTTTEE
T ss_pred CCCCEEEEEecCc-----------CCCcEEEEECCCCeE
Confidence 454444444311 135699999987653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.13 Score=51.16 Aligned_cols=199 Identities=7% Similarity=-0.043 Sum_probs=107.6
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~ 149 (685)
-+++++.+ ++.|||.... .+.+++||+. .....+..+. ....-+++++. ++.||+....
T Consensus 22 p~~i~~d~--~g~l~v~~~~---------~~~v~~~~~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 81 (300)
T 2qc5_A 22 PYGITSSE--DGKVWFTQHK---------ANKISSLDQS-GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENG------ 81 (300)
T ss_dssp EEEEEECT--TSCEEEEETT---------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECTTSCEEEEETT------
T ss_pred cceeeECC--CCCEEEEcCC---------CCeEEEECCC-CceEEEECCC--CCCcceeEEECCCCCEEEEecC------
Confidence 35566655 5788886531 1468899988 7776654321 11223344443 4778886531
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
.+.+++||+. +.+..+... .....-+++++. ++.||+.... .+.|++||+. .+...+....
T Consensus 82 -----~~~v~~~d~~-g~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~-g~~~~~~~~~ 143 (300)
T 2qc5_A 82 -----ANKIGKLSKK-GGFTEYPLP--QPDSGPYGITEGLNGDIWFTQLN---------GDRIGKLTAD-GTIYEYDLPN 143 (300)
T ss_dssp -----TTEEEEECTT-SCEEEEECS--STTCCEEEEEECSTTCEEEEETT---------TTEEEEECTT-SCEEEEECSS
T ss_pred -----CCeEEEECCC-CCeEEecCC--CCCCCCccceECCCCCEEEEccC---------CCeEEEECCC-CCEEEccCCC
Confidence 2468899988 777655431 112222344443 5778876432 2468889887 6655443221
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~ 306 (685)
....-++++.. ++.||+...... .+++|++ +.++..+.... ....-.++++. +
T Consensus 144 -----~~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~ 198 (300)
T 2qc5_A 144 -----KGSYPAFITLGSDNALWFTENQNN----------------SIGRITN-TGKLEEYPLPT---NAAAPVGITSGND 198 (300)
T ss_dssp -----TTCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEECSS---TTCCEEEEEECTT
T ss_pred -----CCCCceeEEECCCCCEEEEecCCC----------------eEEEECC-CCcEEEeeCCC---CCCCcceEEECCC
Confidence 11122334443 566777653222 3788988 56666543211 11122344443 5
Q ss_pred CeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
+.||+.... .+.|++||+ +..+..+.
T Consensus 199 g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 199 GALWFVEIM--------------GNKIGRITT-TGEISEYD 224 (300)
T ss_dssp SSEEEEETT--------------TTEEEEECT-TCCEEEEE
T ss_pred CCEEEEccC--------------CCEEEEEcC-CCcEEEEE
Confidence 677775421 234888888 56666554
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.94 E-value=0.079 Score=53.72 Aligned_cols=196 Identities=12% Similarity=0.044 Sum_probs=98.3
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++...| ++.+++.|+. + ..+.+||+.+..-...-... ...-.+++.. ++.+++.|+..
T Consensus 70 ~~~~~~--~~~~l~s~~~--d-------~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d------- 128 (312)
T 4ery_A 70 DVAWSS--DSNLLVSASD--D-------KTLKIWDVSSGKCLKTLKGH---SNYVFCCNFNPQSNLIVSGSFD------- 128 (312)
T ss_dssp EEEECT--TSSEEEEEET--T-------SEEEEEETTTCCEEEEEECC---SSCEEEEEECSSSSEEEEEETT-------
T ss_pred EEEEcC--CCCEEEEECC--C-------CEEEEEECCCCcEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCC-------
Confidence 344454 4566666662 1 35788888877543221111 1111222222 35666777653
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
..+.+||+.+..-...-. .....-..+.+ ++.+++.|+.+ ..+.+||+.+.+....-...
T Consensus 129 ----~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~~wd~~~~~~~~~~~~~- 190 (312)
T 4ery_A 129 ----ESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYD---------GLCRIWDTASGQCLKTLIDD- 190 (312)
T ss_dssp ----SCEEEEETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCCEEEEECCS-
T ss_pred ----CcEEEEECCCCEEEEEec----CCCCcEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeeEEecc-
Confidence 347889998775432211 11111223333 55677777753 35888998876543322110
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEE-EECC
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC-VHKK 307 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~-~~~~ 307 (685)
..+. -..++.. ++..++.|+..+. +.+||+.+..-...-.. .......-.... ..++
T Consensus 191 ---~~~~-~~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 191 ---DNPP-VSFVKFSPNGKYILAATLDNT----------------LKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGG 249 (312)
T ss_dssp ---SCCC-EEEEEECTTSSEEEEEETTTE----------------EEEEETTTTEEEEEECS-SCCSSSCCCEEEECSSS
T ss_pred ---CCCc-eEEEEECCCCCEEEEEcCCCe----------------EEEEECCCCcEEEEEEe-cCCceEEEEEEEEeCCC
Confidence 1111 1112222 5666677766544 77888877654332221 111111111222 2356
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
.+++.|+.. +.|.+||+.+..
T Consensus 250 ~~l~sg~~d--------------g~i~vwd~~~~~ 270 (312)
T 4ery_A 250 KWIVSGSED--------------NLVYIWNLQTKE 270 (312)
T ss_dssp CEEEECCTT--------------SCEEEEETTTCC
T ss_pred cEEEEECCC--------------CEEEEEECCCch
Confidence 677777753 348999988764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.46 Score=48.38 Aligned_cols=210 Identities=14% Similarity=0.080 Sum_probs=107.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
+.+++.|. ++.||+...... .....+.+++||+.+.+....... ....+.+++. ++.+|+.++.
T Consensus 44 ~~~~~s~d-g~~l~~~~~~~~---~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~------ 109 (353)
T 3vgz_A 44 YEMAYSQQ-ENALWLATSQSR---KLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATINNTTQTLWFGNTV------ 109 (353)
T ss_dssp EEEEEETT-TTEEEEEECCCT---TTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEEETTTTEEEEEETT------
T ss_pred cceEECCC-CCEEEEEcCCCc---CCCCCccEEEEcCCCCeEEEEEec----CCCcceEEECCCCCEEEEEecC------
Confidence 45666663 467777664211 111235799999988865432211 1112334443 3568887653
Q ss_pred ccccccCeEEEEECCCCcEEE-cccCCCCC-----CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQ-LNLKGCPS-----PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~-~~~~g~P~-----~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
-+.+++||+.+++-.. +....... +..-+.+++. +++||+.+... ...|++||+.+.+-
T Consensus 110 -----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 110 -----NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK--------ESVIWVVDGGNIKL 176 (353)
T ss_dssp -----TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS--------SCEEEEEETTTTEE
T ss_pred -----CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC--------CceEEEEcCCCCce
Confidence 2469999999887433 22211111 1112333333 45677765321 24699999987654
Q ss_pred EEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcce
Q 005655 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (685)
Q Consensus 222 ~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g 299 (685)
...-.. ....-++++.. +..||+... . ..+++||+.+.+-......+........
T Consensus 177 ~~~~~~------~~~~~~~~~~s~dg~~l~~~~~-~----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 177 KTAIQN------TGKMSTGLALDSEGKRLYTTNA-D----------------GELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEECC------CCTTCCCCEEETTTTEEEEECT-T----------------SEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEecC------CCCccceEEECCCCCEEEEEcC-C----------------CeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 433221 11111223333 556666543 2 2377899887754443332211112222
Q ss_pred eEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 300 ~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
.++++. ++.+|+.+.. .+.|++||+.+.+...
T Consensus 234 ~~~~~s~dg~~l~~~~~~--------------~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 234 INISLDTARQRAFITDSK--------------AAEVLVVDTRNGNILA 267 (353)
T ss_dssp EEEEEETTTTEEEEEESS--------------SSEEEEEETTTCCEEE
T ss_pred ceEEECCCCCEEEEEeCC--------------CCEEEEEECCCCcEEE
Confidence 344554 4456655422 2569999998876543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.052 Score=54.94 Aligned_cols=195 Identities=13% Similarity=0.051 Sum_probs=102.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.++++|+. + +.+.+||+.+.....+...... ...-.+++.. ++.+++.|+..
T Consensus 101 ~~~~~~~--~~~~l~~~~~--d-------~~i~~~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d------ 162 (337)
T 1gxr_A 101 RSCKLLP--DGCTLIVGGE--A-------STLSIWDLAAPTPRIKAELTSS-APACYALAISPDSKVCFSCCSD------ 162 (337)
T ss_dssp EEEEECT--TSSEEEEEES--S-------SEEEEEECCCC--EEEEEEECS-SSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEEEcC--CCCEEEEEcC--C-------CcEEEEECCCCCcceeeecccC-CCceEEEEECCCCCEEEEEeCC------
Confidence 3445555 4666666662 1 3688999988875433221111 1111223333 45566666642
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
..+.+||+.+......-. .. ......+.+ ++.+++.|+.. ..+.+||+.+..-......
T Consensus 163 -----g~v~~~d~~~~~~~~~~~--~~--~~~i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~- 223 (337)
T 1gxr_A 163 -----GNIAVWDLHNQTLVRQFQ--GH--TDGASCIDISNDGTKLWTGGLD---------NTVRSWDLREGRQLQQHDF- 223 (337)
T ss_dssp -----SCEEEEETTTTEEEEEEC--CC--SSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTTEEEEEEEC-
T ss_pred -----CcEEEEeCCCCceeeeee--cc--cCceEEEEECCCCCEEEEEecC---------CcEEEEECCCCceEeeecC-
Confidence 358899998876543322 11 112222333 55666676642 4688999887654333222
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~ 306 (685)
+.+ -.+++.. ++.++++|+..+. +.+||+.+..-..+.. ....-.++++. +
T Consensus 224 ----~~~--v~~~~~s~~~~~l~~~~~~~~----------------i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~ 276 (337)
T 1gxr_A 224 ----TSQ--IFSLGYCPTGEWLAVGMESSN----------------VEVLHVNKPDKYQLHL-----HESCVLSLKFAYC 276 (337)
T ss_dssp ----SSC--EEEEEECTTSSEEEEEETTSC----------------EEEEETTSSCEEEECC-----CSSCEEEEEECTT
T ss_pred ----CCc--eEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCCeEEEcC-----CccceeEEEECCC
Confidence 111 2233333 5667777776544 7788887665333321 11122333443 5
Q ss_pred CeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
+++++.|+.. +.|.+||+.+..-.
T Consensus 277 ~~~l~~~~~d--------------g~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 277 GKWFVSTGKD--------------NLLNAWRTPYGASI 300 (337)
T ss_dssp SSEEEEEETT--------------SEEEEEETTTCCEE
T ss_pred CCEEEEecCC--------------CcEEEEECCCCeEE
Confidence 6677777643 35899998876543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.12 Score=51.56 Aligned_cols=191 Identities=9% Similarity=0.024 Sum_probs=100.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
+++++.| ++.||+.... .+.+++||+ ++....+..+. ....-++++.. ++.||+....
T Consensus 102 ~~i~~~~--~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------- 160 (299)
T 2z2n_A 102 YGITEGP--NGDIWFTEMN---------GNRIGRITD-DGKIREYELPN--KGSYPSFITLGSDNALWFTENQ------- 160 (299)
T ss_dssp EEEEECT--TSCEEEEETT---------TTEEEEECT-TCCEEEEECSS--TTCCEEEEEECTTSCEEEEETT-------
T ss_pred eeeEECC--CCCEEEEecC---------CceEEEECC-CCCEEEecCCC--CCCCCceEEEcCCCCEEEEeCC-------
Confidence 4555554 5677775431 135888998 66666553321 11223444444 4688886421
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCcc-ceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG-HRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsg-h~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
.+.+++||+ ++....+.. +..-.. +++++. ++.||+.... .+.|++||+ +..+..+....
T Consensus 161 ----~~~i~~~~~-~g~~~~~~~---~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~~ 222 (299)
T 2z2n_A 161 ----NNAIGRITE-SGDITEFKI---PTPASGPVGITKGNDDALWFVEII---------GNKIGRITT-SGEITEFKIPT 222 (299)
T ss_dssp ----TTEEEEECT-TCCEEEEEC---SSTTCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred ----CCEEEEEcC-CCcEEEeeC---CCCCCcceeEEECCCCCEEEEccC---------CceEEEECC-CCcEEEEECCC
Confidence 256899999 777776532 111112 233333 4678876431 256899999 77776653321
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECC
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~ 307 (685)
+ ...-++++.. ++.||+...... .+++||+ +.....+..... ...-.++++.++
T Consensus 223 ----~-~~~~~~i~~~~~g~l~v~~~~~~----------------~i~~~d~-~g~~~~~~~~~~---~~~~~~i~~~~g 277 (299)
T 2z2n_A 223 ----P-NARPHAITAGAGIDLWFTEWGAN----------------KIGRLTS-NNIIEEYPIQIK---SAEPHGICFDGE 277 (299)
T ss_dssp ----T-TCCEEEEEECSTTCEEEEETTTT----------------EEEEEET-TTEEEEEECSSS---SCCEEEEEECSS
T ss_pred ----C-CCCceeEEECCCCCEEEeccCCc----------------eEEEECC-CCceEEEeCCCC---CCccceEEecCC
Confidence 1 1112233333 567777643222 3788888 445444432111 112234444566
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
.||+... .+.|++|++.+.
T Consensus 278 ~l~v~~~---------------~~~l~~~~~~~~ 296 (299)
T 2z2n_A 278 TIWFAME---------------CDKIGKLTLIKD 296 (299)
T ss_dssp CEEEEET---------------TTEEEEEEEC--
T ss_pred CEEEEec---------------CCcEEEEEcCcc
Confidence 7776543 134888887664
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.038 Score=57.08 Aligned_cols=113 Identities=7% Similarity=0.082 Sum_probs=64.2
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C--CEEEEEcCccCCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K--NYLYIFGGEFTSPNQ 149 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~--~~iyvfGG~~~s~~~ 149 (685)
++...| ++.+++.|+. + +.+.+||+....+..+..... ....-.+++.. + +.+++.|+..
T Consensus 16 ~~~~s~--~~~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d----- 78 (379)
T 3jrp_A 16 DAVLDY--YGKRLATCSS--D-------KTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYD----- 78 (379)
T ss_dssp EEEECS--SSSEEEEEET--T-------SCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETT-----
T ss_pred EEEEcC--CCCEEEEEEC--C-------CcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccC-----
Confidence 344555 5667777762 2 357888888777765543221 11111223322 2 5677777753
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--C--CEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
..+.+||+.++.|..+.. .........++.+ . +.+++.|+.+ ..|.+||+.+.
T Consensus 79 ------g~v~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~~ 135 (379)
T 3jrp_A 79 ------GKVLIWKEENGRWSQIAV--HAVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKEN 135 (379)
T ss_dssp ------SCEEEEEEETTEEEEEEE--ECCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCTT
T ss_pred ------CEEEEEEcCCCceeEeee--ecCCCcceEEEEeCCCCCCCEEEEecCC---------CcEEEEecCCC
Confidence 347888998998876655 2222222333444 2 5677777753 46788888765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.27 Score=50.16 Aligned_cols=184 Identities=11% Similarity=0.076 Sum_probs=95.6
Q ss_pred ccEEEEEcCCCcEE-EecCCCCCC-----CcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcc
Q 005655 101 GDLYRYDVEKQEWK-VISSPNSPP-----PRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172 (685)
Q Consensus 101 ndv~~yd~~~~~W~-~l~s~~~P~-----~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~ 172 (685)
+.+++||+.+.+-. .+....... +..-+++++. ++.+|+.+... -..+++||+.+..-...-
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----------ESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----------SCEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----------CceEEEEcCCCCceEEEe
Confidence 46899999887643 333221111 1112344443 46688776321 146999999887644332
Q ss_pred cCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEE
Q 005655 173 LKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEV 248 (685)
Q Consensus 173 ~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~I 248 (685)
. . ....-+.++.. +++||+... .+.+++||+.+.+-........ . .......+++.. ++.|
T Consensus 181 ~--~-~~~~~~~~~~s~dg~~l~~~~~----------~~~i~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 181 Q--N-TGKMSTGLALDSEGKRLYTTNA----------DGELITIDTADNKILSRKKLLD-D-GKEHFFINISLDTARQRA 245 (353)
T ss_dssp C--C-CCTTCCCCEEETTTTEEEEECT----------TSEEEEEETTTTEEEEEEECCC-S-SSCCCEEEEEEETTTTEE
T ss_pred c--C-CCCccceEEECCCCCEEEEEcC----------CCeEEEEECCCCeEEEEEEcCC-C-CCCcccceEEECCCCCEE
Confidence 2 0 11112233333 456666543 2468899998876443222210 0 011112223333 5567
Q ss_pred EEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE--CCeEEEecceecccCCccccc
Q 005655 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIM 326 (685)
Q Consensus 249 yv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~ 326 (685)
|+.+... +.+++||+.+.+.......+ .+ .++++. ++.+|+.+..
T Consensus 246 ~~~~~~~----------------~~v~~~d~~~~~~~~~~~~~---~~---~~~~~s~dg~~l~v~~~~----------- 292 (353)
T 3vgz_A 246 FITDSKA----------------AEVLVVDTRNGNILAKVAAP---ES---LAVLFNPARNEAYVTHRQ----------- 292 (353)
T ss_dssp EEEESSS----------------SEEEEEETTTCCEEEEEECS---SC---CCEEEETTTTEEEEEETT-----------
T ss_pred EEEeCCC----------------CEEEEEECCCCcEEEEEEcC---CC---ceEEECCCCCEEEEEECC-----------
Confidence 7665332 24889999887665544332 22 234444 3457765532
Q ss_pred cccCCcEEEEECCCCcEEE
Q 005655 327 SLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 327 ~~~~ndl~~yd~~t~~W~~ 345 (685)
-+.|++||+.+.+...
T Consensus 293 ---~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 293 ---AGKVSVIDAKSYKVVK 308 (353)
T ss_dssp ---TTEEEEEETTTTEEEE
T ss_pred ---CCeEEEEECCCCeEEE
Confidence 2469999998876543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.23 Score=49.36 Aligned_cols=198 Identities=6% Similarity=-0.030 Sum_probs=108.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
+++++.+ ++.||+.... .+.+++||+. ..+..+..+. ....-++++.. ++.||+....
T Consensus 18 ~~i~~d~--~g~l~v~~~~---------~~~v~~~d~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------- 76 (299)
T 2z2n_A 18 YGITVSD--KGKVWITQHK---------ANMISCINLD-GKITEYPLPT--PDAKVMCLTISSDGEVWFTENA------- 76 (299)
T ss_dssp EEEEECT--TSCEEEEETT---------TTEEEEECTT-CCEEEEECSS--TTCCEEEEEECTTSCEEEEETT-------
T ss_pred cceEECC--CCCEEEEecC---------CCcEEEEcCC-CCeEEecCCc--ccCceeeEEECCCCCEEEeCCC-------
Confidence 4556665 5778875431 1368899998 7777665321 11223344443 5778887532
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCC-CCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P-~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
...+++||+. +.+..+.. | ....-+++++. ++.||+.... ...+++||+ +.....+....
T Consensus 77 ----~~~i~~~~~~-g~~~~~~~---~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~~ 138 (299)
T 2z2n_A 77 ----ANKIGRITKK-GIIKEYTL---PNPDSAPYGITEGPNGDIWFTEMN---------GNRIGRITD-DGKIREYELPN 138 (299)
T ss_dssp ----TTEEEEECTT-SCEEEEEC---SSTTCCEEEEEECTTSCEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred ----CCeEEEECCC-CcEEEEeC---CCcCCCceeeEECCCCCEEEEecC---------CceEEEECC-CCCEEEecCCC
Confidence 1458889886 55655442 2 12222344443 5788886432 246888998 66665554321
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~ 306 (685)
....-++++.. ++.||+...... .+++||+ +.+...+.... ....-.++++. +
T Consensus 139 -----~~~~~~~i~~~~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~ 193 (299)
T 2z2n_A 139 -----KGSYPSFITLGSDNALWFTENQNN----------------AIGRITE-SGDITEFKIPT---PASGPVGITKGND 193 (299)
T ss_dssp -----TTCCEEEEEECTTSCEEEEETTTT----------------EEEEECT-TCCEEEEECSS---TTCCEEEEEECTT
T ss_pred -----CCCCCceEEEcCCCCEEEEeCCCC----------------EEEEEcC-CCcEEEeeCCC---CCCcceeEEECCC
Confidence 11222344444 667887643222 3788998 66666543211 11122344444 5
Q ss_pred CeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+.+|+.... .+.|++||+ +..+..+..
T Consensus 194 g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 220 (299)
T 2z2n_A 194 DALWFVEII--------------GNKIGRITT-SGEITEFKI 220 (299)
T ss_dssp SSEEEEETT--------------TTEEEEECT-TCCEEEEEC
T ss_pred CCEEEEccC--------------CceEEEECC-CCcEEEEEC
Confidence 677775422 245889998 777665543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.78 E-value=0.094 Score=54.03 Aligned_cols=149 Identities=12% Similarity=0.114 Sum_probs=77.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.++++|+. + +.+++||+.+..|..+..... ....-.+++.. ++.+++.|+..
T Consensus 12 ~~~~~s~--~~~~l~~~~~--d-------~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d------ 73 (372)
T 1k8k_C 12 SCHAWNK--DRTQIAICPN--N-------HEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTD------ 73 (372)
T ss_dssp CEEEECT--TSSEEEEECS--S-------SEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETT------
T ss_pred EEEEECC--CCCEEEEEeC--C-------CEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCC------
Confidence 3455566 5778888873 1 468899999987664433211 11122233333 46666777642
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc-eEEeccC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPR 227 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~~ 227 (685)
..+.+||+.+..+..... ..........+.+ ++.+++.|+.. ..+.+||+.+.. |..+...
T Consensus 74 -----g~i~vwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~ 137 (372)
T 1k8k_C 74 -----RNAYVWTLKGRTWKPTLV--ILRINRAARCVRWAPNEKKFAVGSGS---------RVISICYFEQENDWWVCKHI 137 (372)
T ss_dssp -----SCEEEEEEETTEEEEEEE--CCCCSSCEEEEEECTTSSEEEEEETT---------SSEEEEEEETTTTEEEEEEE
T ss_pred -----CeEEEEECCCCeeeeeEE--eecCCCceeEEEECCCCCEEEEEeCC---------CEEEEEEecCCCcceeeeee
Confidence 347788888888765543 1111222223333 45677777643 345666665443 3332222
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
.. +....-.++... ++.+++.|+..+.
T Consensus 138 ~~---~~~~~i~~~~~~~~~~~l~~~~~dg~ 165 (372)
T 1k8k_C 138 KK---PIRSTVLSLDWHPNSVLLAAGSCDFK 165 (372)
T ss_dssp CT---TCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred ec---ccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence 10 111112233333 6667777877654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.44 Score=47.41 Aligned_cols=206 Identities=10% Similarity=0.053 Sum_probs=108.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCC--CcceeEEEEE--CCEEEEEcCccCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP--PRSAHQAVSW--KNYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~--~R~~ha~v~~--~~~iyvfGG~~~s~ 147 (685)
+++++.+ ++.|||.+.. .+.|++||+.......+....... ...-+.+++. ++.|||.+...
T Consensus 33 ~~v~~~~--~g~l~v~~~~---------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~--- 98 (286)
T 1q7f_A 33 SGVAVNA--QNDIIVADTN---------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP--- 98 (286)
T ss_dssp EEEEECT--TCCEEEEEGG---------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG---
T ss_pred ceEEECC--CCCEEEEECC---------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC---
Confidence 4455554 5678887541 136889998865544443311111 1123444443 58899886421
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
.+.+.+||.....-..+.. +....-+.+++. ++.||+.... .+.|++||+.......+..
T Consensus 99 -------~~~i~~~d~~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~~~ 159 (286)
T 1q7f_A 99 -------THQIQIYNQYGQFVRKFGA---TILQHPRGVTVDNKGRIIVVECK---------VMRVIIFDQNGNVLHKFGC 159 (286)
T ss_dssp -------GCEEEEECTTSCEEEEECT---TTCSCEEEEEECTTSCEEEEETT---------TTEEEEECTTSCEEEEEEC
T ss_pred -------CCEEEEECCCCcEEEEecC---ccCCCceEEEEeCCCCEEEEECC---------CCEEEEEcCCCCEEEEeCC
Confidence 2468889965444333332 111122333333 5678886542 2468889976654444432
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE
Q 005655 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 227 ~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
. . ....-.++++. ++.||+.+.... .+++||+.......+...+.. ..-.++++-
T Consensus 160 ~--~---~~~~p~~i~~~~~g~l~v~~~~~~----------------~i~~~~~~g~~~~~~~~~g~~---~~p~~i~~d 215 (286)
T 1q7f_A 160 S--K---HLEFPNGVVVNDKQEIFISDNRAH----------------CVKVFNYEGQYLRQIGGEGIT---NYPIGVGIN 215 (286)
T ss_dssp T--T---TCSSEEEEEECSSSEEEEEEGGGT----------------EEEEEETTCCEEEEESCTTTS---CSEEEEEEC
T ss_pred C--C---ccCCcEEEEECCCCCEEEEECCCC----------------EEEEEcCCCCEEEEEccCCcc---CCCcEEEEC
Confidence 2 0 11111233333 678888765433 378899876554444322211 122344443
Q ss_pred -CCeEEEecceecccCCccccccccCC-cEEEEECCCCcEEEEEe
Q 005655 306 -KKRALLFGGVVDMEMKGDVIMSLFLN-ELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~n-dl~~yd~~t~~W~~l~~ 348 (685)
++++||..... + .|.+||+....-..+..
T Consensus 216 ~~G~l~v~~~~~--------------~~~i~~~~~~g~~~~~~~~ 246 (286)
T 1q7f_A 216 SNGEILIADNHN--------------NFNLTIFTQDGQLISALES 246 (286)
T ss_dssp TTCCEEEEECSS--------------SCEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCC--------------CEEEEEECCCCCEEEEEcc
Confidence 57888776431 2 58999976554444433
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=96.69 E-value=0.37 Score=48.77 Aligned_cols=210 Identities=10% Similarity=-0.017 Sum_probs=104.3
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCC
Q 005655 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTS 146 (685)
Q Consensus 68 ~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s 146 (685)
...+-+.+..|. ++.||++.-. .+.+++||+.++....+..+. + -.+++.. ++.|||..+
T Consensus 12 ~~~~Egp~w~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~~~----~-~~~i~~~~dG~l~v~~~---- 72 (297)
T 3g4e_A 12 CRCGESPVWEEV-SNSLLFVDIP---------AKKVCRWDSFTKQVQRVTMDA----P-VSSVALRQSGGYVATIG---- 72 (297)
T ss_dssp CSBEEEEEEETT-TTEEEEEETT---------TTEEEEEETTTCCEEEEECSS----C-EEEEEEBTTSSEEEEET----
T ss_pred CccccCCeEECC-CCEEEEEECC---------CCEEEEEECCCCcEEEEeCCC----c-eEEEEECCCCCEEEEEC----
Confidence 345556666653 3778887652 246899999988766554321 1 1233333 456666431
Q ss_pred CCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCC---ceeeeceEEEEEcCCCce
Q 005655 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLR---EVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~---~~~~~~dv~~yD~~t~~W 221 (685)
+.+++||+.++.++.+.......+......+.+ ++.||+- ....... .......||+|++.. ..
T Consensus 73 ---------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~-~~~~~~~~~~~~~~~~~l~~~d~~g-~~ 141 (297)
T 3g4e_A 73 ---------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAG-TMAEETAPAVLERHQGALYSLFPDH-HV 141 (297)
T ss_dssp ---------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEE-EEECCSBTTBCCTTCEEEEEECTTS-CE
T ss_pred ---------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEe-cCCcccccccccCCCcEEEEEECCC-CE
Confidence 468999999999887754211112221222223 5677763 2211100 001134688888753 33
Q ss_pred EEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeC--CCceeEEeecCCCCCC-C
Q 005655 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP--RTWEWSKVKKIGMPPG-P 296 (685)
Q Consensus 222 ~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~--~t~~W~~~~~~g~~P~-~ 296 (685)
..+... ...-..++.. +..||+...... .+++|+. .+............+. .
T Consensus 142 ~~~~~~-------~~~pngi~~spdg~~lyv~~~~~~----------------~i~~~~~d~~~G~~~~~~~~~~~~~~~ 198 (297)
T 3g4e_A 142 KKYFDQ-------VDISNGLDWSLDHKIFYYIDSLSY----------------SVDAFDYDLQTGQISNRRSVYKLEKEE 198 (297)
T ss_dssp EEEEEE-------ESBEEEEEECTTSCEEEEEEGGGT----------------EEEEEEECTTTCCEEEEEEEEECCGGG
T ss_pred EEEeec-------cccccceEEcCCCCEEEEecCCCC----------------cEEEEeccCCCCcccCcEEEEECCCCC
Confidence 332211 0111233333 446887765433 3677764 4444322111000011 1
Q ss_pred cceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 297 RAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 297 R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
..-.++++- +++|||.... -+.|++||+.+.+..
T Consensus 199 ~~p~g~~~d~~G~lwva~~~--------------~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 199 QIPDGMCIDAEGKLWVACYN--------------GGRVIRLDPVTGKRL 233 (297)
T ss_dssp CEEEEEEEBTTSCEEEEEET--------------TTEEEEECTTTCCEE
T ss_pred CCCCeeEECCCCCEEEEEcC--------------CCEEEEEcCCCceEE
Confidence 112344443 5777776421 134899998866543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.042 Score=55.65 Aligned_cols=155 Identities=7% Similarity=0.004 Sum_probs=100.6
Q ss_pred eEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceee
Q 005655 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRY 207 (685)
Q Consensus 128 ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~ 207 (685)
.++...++.||+..|.. ..+.++|+.|++=..-- ++..-.+.+++..+++||+....
T Consensus 58 qGL~~~~~~Ly~stG~~-----------g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~--------- 114 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQ-----------GTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT--------- 114 (268)
T ss_dssp EEEEEETTEEEEEETTT-----------TEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS---------
T ss_pred ceEEEECCEEEEEcCCC-----------CEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc---------
Confidence 45566689999999853 34889999988643221 23345677788899999998553
Q ss_pred eceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
.+.+++||+.+.+-..- . +.+-.|.+++..++.||+.-| + +.++++||.+.+-...
T Consensus 115 ~~~v~V~D~~Tl~~~~t--i-----~~~~eGwGLt~Dg~~L~vSdG-s----------------~~l~~iDp~T~~v~~~ 170 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERT--T-----RYSGEGWGLCYWNGKLVRSDG-G----------------TMLTFHEPDGFALVGA 170 (268)
T ss_dssp SCEEEEEETTTTEEEEE--E-----ECSSCCCCEEEETTEEEEECS-S----------------SEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCcCcEEEE--E-----eCCCceeEEecCCCEEEEECC-C----------------CEEEEEcCCCCeEEEE
Confidence 46899999988764322 2 222346677777889999865 3 2489999998765544
Q ss_pred ecCCCCCCCc-ceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 288 KKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 288 ~~~g~~P~~R-~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
-..+..|.+. .---+.+.+++||+- +. ..+.|.+.|+.+.+=
T Consensus 171 I~V~~~g~~v~~lNeLe~~dG~lyan--vw------------~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 171 VQVKLRGQPVELINELECANGVIYAN--IW------------HSSDVLEIDPATGTV 213 (268)
T ss_dssp EECEETTEECCCEEEEEEETTEEEEE--ET------------TCSEEEEECTTTCBE
T ss_pred EEeCCCCcccccccccEEeCCEEEEE--EC------------CCCeEEEEeCCCCcE
Confidence 3222112111 112345558887742 11 257899999998854
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.18 Score=53.36 Aligned_cols=189 Identities=14% Similarity=0.032 Sum_probs=100.3
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~ 179 (685)
.+|.+|+.+..+..+.... .....++++.. ++.+|+.++.. ..+.+||+.++........+ ....
T Consensus 102 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~-----------~~i~~~d~~~g~~~~~~~~~~~~~~ 168 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFK--TGFQPKSVRFIDNTRLAIPLLED-----------EGMDVLDINSGQTVRLSPPEKYKKK 168 (433)
T ss_dssp CEEECCBTTCSEEEEEEEE--CSSCBCCCEESSSSEEEEEBTTS-----------SSEEEEETTTCCEEEECCCHHHHTT
T ss_pred EEEEECCCCCcceEEEEEc--CCCCceEEEEeCCCeEEEEeCCC-----------CeEEEEECCCCeEeeecCccccccc
Confidence 7888888777666543321 11112233333 57788777642 34899999988876543310 0111
Q ss_pred CccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEeccc
Q 005655 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYS 255 (685)
Q Consensus 180 Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~ 255 (685)
......+.+ ++.+|+.|+.. ..+.+||+.+.+....-.. . ...-.+++.. +..+|+.++..
T Consensus 169 ~~~v~~~~~~~~~~~~~s~~~d---------~~v~~~d~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~~~~~~ 233 (433)
T 3bws_A 169 LGFVETISIPEHNELWVSQMQA---------NAVHVFDLKTLAYKATVDL-----T-GKWSKILLYDPIRDLVYCSNWIS 233 (433)
T ss_dssp CCEEEEEEEGGGTEEEEEEGGG---------TEEEEEETTTCCEEEEEEC-----S-SSSEEEEEEETTTTEEEEEETTT
T ss_pred CCceeEEEEcCCCEEEEEECCC---------CEEEEEECCCceEEEEEcC-----C-CCCeeEEEEcCCCCEEEEEecCC
Confidence 112222334 67888877742 4688999987654332221 0 1111223333 55677776554
Q ss_pred CCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEE
Q 005655 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (685)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (685)
+. +++||+.+........ ....-.++++. +++.+++++....... .--..|+
T Consensus 234 ~~----------------i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~------~~dg~i~ 286 (433)
T 3bws_A 234 ED----------------ISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQE------SGGGRLG 286 (433)
T ss_dssp TE----------------EEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTC------SCCEEEE
T ss_pred Cc----------------EEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccc------cCCCeEE
Confidence 33 8899998876654432 11222334443 5555555554321000 0124699
Q ss_pred EEECCCCcEEE
Q 005655 335 GFQLDNHRWYP 345 (685)
Q Consensus 335 ~yd~~t~~W~~ 345 (685)
+||+.+..-..
T Consensus 287 ~~d~~~~~~~~ 297 (433)
T 3bws_A 287 IYSMDKEKLID 297 (433)
T ss_dssp EEETTTTEEEE
T ss_pred EEECCCCcEEe
Confidence 99998875443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.076 Score=54.72 Aligned_cols=202 Identities=10% Similarity=0.065 Sum_probs=102.7
Q ss_pred CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C--CEEEEEcCccCCCCCccccccCeE
Q 005655 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K--NYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~--~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
+.+++.|+. + ..+.+||+.++.|..+..... ....-.+++.. . +.++++|+.. ..+
T Consensus 69 ~~~l~s~~~--d-------g~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~d-----------~~i 127 (379)
T 3jrp_A 69 GTILASCSY--D-------GKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSD-----------GKV 127 (379)
T ss_dssp CSEEEEEET--T-------SCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETT-----------SEE
T ss_pred CCEEEEecc--C-------CEEEEEEcCCCceeEeeeecC-CCcceEEEEeCCCCCCCEEEEecCC-----------CcE
Confidence 567777763 2 358889999998875543321 11122223333 2 5677777642 357
Q ss_pred EEEECCCCcE-EEcccCCCCCCCccceEEEE--------------CCEEEEEccccCCCCceeeeceEEEEEcCCC--ce
Q 005655 159 WMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY--------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KW 221 (685)
Q Consensus 159 ~~yD~~t~~W-~~~~~~g~P~~Rsgh~~v~~--------------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W 221 (685)
.+||+.+... ......+.. ..-.+++.. ++.+++.|+.+ ..|.+||+.+. .|
T Consensus 128 ~v~d~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~ 196 (379)
T 3jrp_A 128 SVVEFKENGTTSPIIIDAHA--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQTY 196 (379)
T ss_dssp EEEECCTTSCCCEEEEECCT--TCEEEEEECCCC----------CTTCEEEEEETT---------SCEEEEEEETTTTEE
T ss_pred EEEecCCCCceeeEEecCCC--CceEEEEEcCccccccccccCCCCCCEEEEEeCC---------CeEEEEEecCCCcce
Confidence 7888876632 111110011 111122222 36777777753 35777777544 35
Q ss_pred EEeccCCCCCCCCCccceeEEEe-C---CEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCCC
Q 005655 222 QEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPG 295 (685)
Q Consensus 222 ~~v~~~~~~~~P~~Rs~~s~~~~-~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P~ 295 (685)
..+..... ....-.+++.. + +.+++.|+..+. +.+||+.+. .+...... ....
T Consensus 197 ~~~~~~~~----h~~~v~~~~~sp~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~~~~-~~~~ 255 (379)
T 3jrp_A 197 VLESTLEG----HSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EEKF 255 (379)
T ss_dssp EEEEEECC----CSSCEEEEEECCCCSSSEEEEEEETTSC----------------EEEEEESSTTSCCEEEESS-SSCC
T ss_pred eeEEEEec----ccCcEeEEEECCCCCCCCeEEEEeCCCE----------------EEEEeCCCCCccceeeeec-cccC
Confidence 54443311 11111223333 4 788888887765 556665543 22222211 1111
Q ss_pred CcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECC-CCcEEEEEecC
Q 005655 296 PRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELRK 350 (685)
Q Consensus 296 ~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~~l~~~~ 350 (685)
...-.++++. ++.++++|+.. ..|.+|++. ...|..+....
T Consensus 256 ~~~v~~~~~s~~g~~l~~~~~d--------------g~i~iw~~~~~~~~~~~~~~~ 298 (379)
T 3jrp_A 256 PDVLWRASWSLSGNVLALSGGD--------------NKVTLWKENLEGKWEPAGEVH 298 (379)
T ss_dssp SSCEEEEEECSSSCCEEEEESS--------------SSEEEEEEEETTEEEEEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEecCC--------------CcEEEEeCCCCCcccccccee
Confidence 2222333443 66777777653 348888877 56888777643
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=96.45 E-value=0.19 Score=50.53 Aligned_cols=135 Identities=10% Similarity=0.118 Sum_probs=68.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCC-CCcceeEEEEE-C-CEEEEEcCccCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP-PPRSAHQAVSW-K-NYLYIFGGEFTSPN 148 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P-~~R~~ha~v~~-~-~~iyvfGG~~~s~~ 148 (685)
.++++.+ ++.||+..+.. +......+.|++||+.++++..+..+... ....-++++.. + +.|||.+..
T Consensus 21 ~~~~~~~--~g~l~~~~~~~--~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----- 91 (314)
T 1pjx_A 21 EGPVFDK--NGDFYIVAPEV--EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp EEEEECT--TSCEEEEETTC--EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred cCceECC--CCCEEEEEecc--ccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence 4555554 57888872100 00000224689999999988866531100 11122334433 4 788887641
Q ss_pred CccccccCeEEEEECCCCcEEEc-ccCCCCCC-CccceEEEE-CCEEEEEccccCC------CCceeeeceEEEEEcCCC
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP-RSGHRMVLY-KHKIIVFGGFYDT------LREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~-~~~g~P~~-Rsgh~~v~~-~~~lyv~GG~~~~------~~~~~~~~dv~~yD~~t~ 219 (685)
+.+++||+. +....+ .......+ ..-+.+++. ++.||+....... .........|++||+. .
T Consensus 92 -------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 92 -------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp -------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred -------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 358899998 777766 43111111 112233332 5678876432100 0000112578999886 5
Q ss_pred ceEEe
Q 005655 220 KWQEI 224 (685)
Q Consensus 220 ~W~~v 224 (685)
+...+
T Consensus 163 ~~~~~ 167 (314)
T 1pjx_A 163 QMIQV 167 (314)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 55544
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.081 Score=61.85 Aligned_cols=187 Identities=11% Similarity=0.004 Sum_probs=101.2
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
-|++|++.++.+..+..+.......-++++.. ++.||| |.. ...+++||+.++.++.+...+.+. .
T Consensus 384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~-----------~~Gl~~~~~~~~~~~~~~~~~~~~-~ 450 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTY-----------LGNISYYNTRLKKFQIIELEKNEL-L 450 (781)
T ss_dssp CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EET-----------TEEEEEECSSSCEEEECCSTTTCC-C
T ss_pred cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Eec-----------cCCEEEEcCCCCcEEEeccCCCCC-C
Confidence 48889998877775532111111222333333 577887 321 145889999999998876421121 1
Q ss_pred ccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCC
Q 005655 181 SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (685)
Q Consensus 181 sgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~ 258 (685)
.-.+++.. ++.||+- . ..-|++||+.+.+|..+........+.. .-.+++.. ++.|+| |.....
T Consensus 451 ~v~~i~~d~~g~lwig-t----------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~d~~g~lWi-gt~~~G- 516 (781)
T 3v9f_A 451 DVRVFYEDKNKKIWIG-T----------HAGVFVIDLASKKVIHHYDTSNSQLLEN-FVRSIAQDSEGRFWI-GTFGGG- 516 (781)
T ss_dssp CEEEEEECTTSEEEEE-E----------TTEEEEEESSSSSCCEEECTTTSSCSCS-CEEEEEECTTCCEEE-EESSSC-
T ss_pred eEEEEEECCCCCEEEE-E----------CCceEEEeCCCCeEEecccCcccccccc-eeEEEEEcCCCCEEE-EEcCCC-
Confidence 11222222 4677763 2 1458999999999887764421111111 11223333 566665 333222
Q ss_pred CcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE-ECCeEEEecceecccCCccccccccCCcE-EEE
Q 005655 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGGVVDMEMKGDVIMSLFLNEL-YGF 336 (685)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~-~~~~iyvfGG~~~~~~~~~~~~~~~~ndl-~~y 336 (685)
+++||+.+.+|........+|.... .+++. .++.|+|... . -| ++|
T Consensus 517 ---------------l~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-~---------------Glv~~~ 564 (781)
T 3v9f_A 517 ---------------VGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-E---------------GLVCFP 564 (781)
T ss_dssp ---------------EEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-T---------------EEEEES
T ss_pred ---------------EEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-C---------------CceEEE
Confidence 7889999999888764322332221 22222 2566766432 2 25 888
Q ss_pred ECCCCcEEEEE
Q 005655 337 QLDNHRWYPLE 347 (685)
Q Consensus 337 d~~t~~W~~l~ 347 (685)
|+.+.++..+.
T Consensus 565 d~~~~~~~~~~ 575 (781)
T 3v9f_A 565 SARNFDYQVFQ 575 (781)
T ss_dssp CTTTCCCEEEC
T ss_pred CCCCCcEEEcc
Confidence 88888776654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.58 Score=46.34 Aligned_cols=198 Identities=8% Similarity=-0.017 Sum_probs=105.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
+++++.+ ++.|||.... .+.|++||+. +.+..+..+. ....-+++++. ++.||+....
T Consensus 65 ~~i~~~~--~g~l~v~~~~---------~~~v~~~d~~-g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------- 123 (300)
T 2qc5_A 65 MCLIVSS--LGDIWFTENG---------ANKIGKLSKK-GGFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLN------- 123 (300)
T ss_dssp EEEEECT--TSCEEEEETT---------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECSTTCEEEEETT-------
T ss_pred eeEEECC--CCCEEEEecC---------CCeEEEECCC-CCeEEecCCC--CCCCCccceECCCCCEEEEccC-------
Confidence 4455554 5677775431 1358899988 7776554321 11223444444 5788886532
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCC-CCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~-~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
-+.+++||+. +....+.. +. ...-+++++. ++.||+.... ...|++||+ +.++..+....
T Consensus 124 ----~~~i~~~~~~-g~~~~~~~---~~~~~~~~~i~~d~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~~ 185 (300)
T 2qc5_A 124 ----GDRIGKLTAD-GTIYEYDL---PNKGSYPAFITLGSDNALWFTENQ---------NNSIGRITN-TGKLEEYPLPT 185 (300)
T ss_dssp ----TTEEEEECTT-SCEEEEEC---SSTTCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred ----CCeEEEECCC-CCEEEccC---CCCCCCceeEEECCCCCEEEEecC---------CCeEEEECC-CCcEEEeeCCC
Confidence 2468899987 66654432 21 1222333332 4678775421 246889998 66666654321
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~ 306 (685)
....-.+++.. ++.||+...... .+++|++ +..+....... ....-.++++. +
T Consensus 186 -----~~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 186 -----NAAAPVGITSGNDGALWFVEIMGN----------------KIGRITT-TGEISEYDIPT---PNARPHAITAGKN 240 (300)
T ss_dssp -----TTCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEECSS---TTCCEEEEEECST
T ss_pred -----CCCCcceEEECCCCCEEEEccCCC----------------EEEEEcC-CCcEEEEECCC---CCCCceEEEECCC
Confidence 11112233333 567777643222 3788888 55555543211 11122344443 5
Q ss_pred CeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
++||+.... .+.|++||+ +.....+..
T Consensus 241 g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 267 (300)
T 2qc5_A 241 SEIWFTEWG--------------ANQIGRITN-DNTIQEYQL 267 (300)
T ss_dssp TCEEEEETT--------------TTEEEEECT-TSCEEEEEC
T ss_pred CCEEEeccC--------------CCeEEEECC-CCcEEEEEC
Confidence 677776421 245889998 566665543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.027 Score=65.83 Aligned_cols=106 Identities=9% Similarity=0.165 Sum_probs=62.4
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--C--CEEEEEcCccCCCCCccccccC
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYK 156 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~--~~iyvfGG~~~s~~~~~~~~~~ 156 (685)
++.+++.||. + ..+.+||+.+.++..+..... ....-.++.+ + +.+++.||.. .
T Consensus 20 dg~~latg~~--d-------g~I~vwd~~~~~~~~~~~l~~--h~~~V~~l~~s~~~~~~~l~s~s~D-----------g 77 (753)
T 3jro_A 20 YGKRLATCSS--D-------KTIKIFEVEGETHKLIDTLTG--HEGPVWRVDWAHPKFGTILASCSYD-----------G 77 (753)
T ss_dssp SSCCEEEEET--T-------TEEEEEEEETTEEEEEEEECC--CSSCEEEEEECCTTSCSEEEEEETT-----------S
T ss_pred CCCeEEEEEC--C-------CcEEEEecCCCCCccceeccC--CcCceEEEEecCCCCCCEEEEEeCC-----------C
Confidence 4667777762 2 357888888777776543321 1112222333 3 6677777753 3
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCccceEEEE--C--CEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.+.+||+.++.|..+.. .........++.+ + +.+++.||.+ ..|.+||+.+.
T Consensus 78 ~I~vwd~~~~~~~~~~~--~~~h~~~V~~v~~sp~~~~~~l~sgs~d---------g~I~vwdl~~~ 133 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAV--HAVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKEN 133 (753)
T ss_dssp CEEEEEEETTEEEEEEE--ECCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCSS
T ss_pred eEEEEECCCCccccccc--ccCCCCCeEEEEECCCCCCCEEEEEeCC---------CcEEEEEeecC
Confidence 47888888888876655 2222222333344 3 6677888753 36788888765
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.091 Score=61.43 Aligned_cols=185 Identities=9% Similarity=0.098 Sum_probs=105.9
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC---C
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG---C 176 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g---~ 176 (685)
+-+++|++.+++++.+..... ....-.+++.. ++.|||-.. +.+++||+.++.|..+.... +
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~ 492 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKN-ELLDVRVFYEDKNKKIWIGTH-------------AGVFVIDLASKKVIHHYDTSNSQL 492 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTT-CCCCEEEEEECTTSEEEEEET-------------TEEEEEESSSSSCCEEECTTTSSC
T ss_pred CCEEEEcCCCCcEEEeccCCC-CCCeEEEEEECCCCCEEEEEC-------------CceEEEeCCCCeEEecccCccccc
Confidence 358899999999987754311 11222333333 477877421 45889999999987765421 1
Q ss_pred CCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecc
Q 005655 177 PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGY 254 (685)
Q Consensus 177 P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~ 254 (685)
+..+ -.+++.- ++.|+|- .. ..-|++||+.+.++..+... ..+|.... .+++.. ++.|+|-..
T Consensus 493 ~~~~-i~~i~~d~~g~lWig-t~---------~~Gl~~~~~~~~~~~~~~~~--~~l~~~~i-~~i~~d~~g~lWi~T~- 557 (781)
T 3v9f_A 493 LENF-VRSIAQDSEGRFWIG-TF---------GGGVGIYTPDMQLVRKFNQY--EGFCSNTI-NQIYRSSKGQMWLATG- 557 (781)
T ss_dssp SCSC-EEEEEECTTCCEEEE-ES---------SSCEEEECTTCCEEEEECTT--TTCSCSCE-EEEEECTTSCEEEEET-
T ss_pred ccce-eEEEEEcCCCCEEEE-Ec---------CCCEEEEeCCCCeEEEccCC--CCCCCCee-EEEEECCCCCEEEEEC-
Confidence 1111 1122222 5667763 21 13488999999988887653 11232211 222222 566766432
Q ss_pred cCCCCcccCCCCCCceeeeE-EEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCc
Q 005655 255 SKEVSTDKNQSEKGIIHSDL-WSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv-~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~nd 332 (685)
. . + ++||+.+.++.......-+|.... .+++.- ++.|++.+ . +-
T Consensus 558 ~-G----------------lv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t-~---------------~G 603 (781)
T 3v9f_A 558 E-G----------------LVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWAST-N---------------TG 603 (781)
T ss_dssp T-E----------------EEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEEC-S---------------SC
T ss_pred C-C----------------ceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEc-C---------------Cc
Confidence 2 1 4 789998888887754323343332 344433 56777654 2 23
Q ss_pred EEEEECCCCcEEEEEe
Q 005655 333 LYGFQLDNHRWYPLEL 348 (685)
Q Consensus 333 l~~yd~~t~~W~~l~~ 348 (685)
|.+||+.+.++..+..
T Consensus 604 l~~~~~~~~~~~~~~~ 619 (781)
T 3v9f_A 604 ISCYITSKKCFYTYDH 619 (781)
T ss_dssp EEEEETTTTEEEEECG
T ss_pred eEEEECCCCceEEecc
Confidence 8899999888877654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.16 Score=51.19 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=101.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcE----EEecCCCCCCCcceeEEEEE-CCEEEEEcCccCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTS 146 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W----~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s 146 (685)
.++...| ++.+++.|+ + +.+.+||+.+... ..+.... ....-.+++.. ++.++++|+..
T Consensus 55 ~~~~~~~--~~~~l~~~~---d-------g~i~iw~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-- 118 (337)
T 1gxr_A 55 CAVTISN--PTRHVYTGG---K-------GCVKVWDISHPGNKSPVSQLDCLN--RDNYIRSCKLLPDGCTLIVGGEA-- 118 (337)
T ss_dssp CEEEECS--SSSEEEEEC---B-------SEEEEEETTSTTCCSCSEEEECSC--TTSBEEEEEECTTSSEEEEEESS--
T ss_pred EEEEEec--CCcEEEEcC---C-------CeEEEEECCCCCceeeeecccccC--CCCcEEEEEEcCCCCEEEEEcCC--
Confidence 3455555 567777776 2 3578889876542 1221111 11112223333 45566666542
Q ss_pred CCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
..+.+||+.+........ ..........+.+ ++.+++.|+.. ..+.+||+.+.+....
T Consensus 119 ---------~~i~~~d~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~~~~~~ 178 (337)
T 1gxr_A 119 ---------STLSIWDLAAPTPRIKAE--LTSSAPACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQTLVRQ 178 (337)
T ss_dssp ---------SEEEEEECCCC--EEEEE--EECSSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEE
T ss_pred ---------CcEEEEECCCCCcceeee--cccCCCceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCceeee
Confidence 468899998887544332 1111112222333 55666677643 4588999987754433
Q ss_pred ccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEE
Q 005655 225 KPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (685)
Q Consensus 225 ~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~ 303 (685)
-.. . ...-.+++.. ++.+++.|+..+. +.+||+.+..-...... ...-.+++
T Consensus 179 ~~~-----~-~~~i~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~-----~~~v~~~~ 231 (337)
T 1gxr_A 179 FQG-----H-TDGASCIDISNDGTKLWTGGLDNT----------------VRSWDLREGRQLQQHDF-----TSQIFSLG 231 (337)
T ss_dssp ECC-----C-SSCEEEEEECTTSSEEEEEETTSE----------------EEEEETTTTEEEEEEEC-----SSCEEEEE
T ss_pred eec-----c-cCceEEEEECCCCCEEEEEecCCc----------------EEEEECCCCceEeeecC-----CCceEEEE
Confidence 221 1 1112223333 5667777776544 78888877654433221 11123344
Q ss_pred EE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 304 ~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
+. ++.++++|+.. +.|.+||+.+..-
T Consensus 232 ~s~~~~~l~~~~~~--------------~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 232 YCPTGEWLAVGMES--------------SNVEVLHVNKPDK 258 (337)
T ss_dssp ECTTSSEEEEEETT--------------SCEEEEETTSSCE
T ss_pred ECCCCCEEEEEcCC--------------CcEEEEECCCCCe
Confidence 43 56677777642 3489999887653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.36 Score=51.88 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=78.2
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcC--CCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~--~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
.++.+.|. +..|++.|+. + +.+.+||+. +.... .+.... .+..-.+++.. ++..+++|+.
T Consensus 106 ~~~~~s~d-~~~l~~~~~~--d-------g~v~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~---- 169 (450)
T 2vdu_B 106 RNLRLTSD-ESRLIACADS--D-------KSLLVFDVDKTSKNVLKLRKRFC--FSKRPNAISIAEDDTTVIIADK---- 169 (450)
T ss_dssp EEEEECTT-SSEEEEEEGG--G-------TEEEEEEECSSSSSCEEEEEEEE--CSSCEEEEEECTTSSEEEEEET----
T ss_pred EEEEEcCC-CCEEEEEECC--C-------CeEEEEECcCCCCceeeeeeccc--CCCCceEEEEcCCCCEEEEEeC----
Confidence 44555552 3455677773 2 357788877 54333 222101 11111223332 4556666653
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--C---CEEEEEccccCCCCceeeeceEEEEEcCCCceE
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K---HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~---~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (685)
...++.|++.+..........+........++.+ + +.+++.|+.+ ..|.+||+.+....
T Consensus 170 -------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d---------~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 170 -------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD---------EHIKISHYPQCFIV 233 (450)
T ss_dssp -------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT---------SCEEEEEESCTTCE
T ss_pred -------CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC---------CcEEEEECCCCcee
Confidence 2458889887654321000001101111112222 5 6677777753 46888888776544
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEE
Q 005655 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (685)
Q Consensus 223 ~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (685)
..-.... ..+....++. ++.+++.|+..+. +.+||+.+.+...
T Consensus 234 ~~~~~~h---~~~v~~~~~s--d~~~l~s~~~d~~----------------v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 234 DKWLFGH---KHFVSSICCG--KDYLLLSAGGDDK----------------IFAWDWKTGKNLS 276 (450)
T ss_dssp EEECCCC---SSCEEEEEEC--STTEEEEEESSSE----------------EEEEETTTCCEEE
T ss_pred eeeecCC---CCceEEEEEC--CCCEEEEEeCCCe----------------EEEEECCCCcEee
Confidence 3311100 1111222222 6777778876544 7788877765433
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.31 Score=56.14 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=69.5
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCC---CCC---cceeEEEEECCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~---P~~---R~~ha~v~~~~~iyvfGG~~~s~~~~~~ 152 (685)
++.||+... .+.|+++|..+. .|+.-..... |.. ....+.++.++.||+...
T Consensus 77 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---------- 136 (677)
T 1kb0_A 77 DGIMYVSAS----------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------- 136 (677)
T ss_dssp TTEEEEECG----------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----------
Confidence 678887665 247999999887 4885433210 000 112244556888888642
Q ss_pred cccCeEEEEECCCCc--EEEccc-CCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEecc
Q 005655 153 HHYKDFWMLDLKTNQ--WEQLNL-KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~-~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~ 226 (685)
-..++.+|..|++ |+.-.. ..........+.++.++.||+-.+.... .....|+.||..+.+ |+.-..
T Consensus 137 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~----~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 137 --DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY----GVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp --TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEESS
T ss_pred --CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccccc----CCCCEEEEEECCCCcEEEEeccC
Confidence 1468999998875 876432 1001112222345668888775442211 124679999998765 876543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.38 E-value=0.26 Score=49.78 Aligned_cols=193 Identities=11% Similarity=0.081 Sum_probs=101.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++...| ++.+++.|+. + ..+.+|+..+......-... ...-.+++.. ++.+++.|+..
T Consensus 28 ~~~~s~--~~~~l~s~~~--d-------g~i~iw~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~d------- 86 (312)
T 4ery_A 28 SVKFSP--NGEWLASSSA--D-------KLIKIWGAYDGKFEKTISGH---KLGISDVAWSSDSNLLVSASDD------- 86 (312)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTCCEEEEECCC---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEeeC--C-------CeEEEEeCCCcccchhhccC---CCceEEEEEcCCCCEEEEECCC-------
Confidence 445555 5667777762 2 25788898887776443221 1112223333 45677777643
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
..+.+||+.+..-...-. ..... -.++.+ ++.+++.|+.+ ..+.+||+.+.+-...-..
T Consensus 87 ----~~i~vwd~~~~~~~~~~~--~~~~~--v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~-- 147 (312)
T 4ery_A 87 ----KTLKIWDVSSGKCLKTLK--GHSNY--VFCCNFNPQSNLIVSGSFD---------ESVRIWDVKTGKCLKTLPA-- 147 (312)
T ss_dssp ----SEEEEEETTTCCEEEEEE--CCSSC--EEEEEECSSSSEEEEEETT---------SCEEEEETTTCCEEEEECC--
T ss_pred ----CEEEEEECCCCcEEEEEc--CCCCC--EEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCEEEEEecC--
Confidence 358888988775432211 11111 122222 45667777753 3588899887653322111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CC
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~ 307 (685)
. ..+ -.++... ++.+++.|+..+. +.+||+.+.+........ ....-..+++. ++
T Consensus 148 ~--~~~--v~~~~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 204 (312)
T 4ery_A 148 H--SDP--VSAVHFNRDGSLIVSSSYDGL----------------CRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNG 204 (312)
T ss_dssp C--SSC--EEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCEEEEECCS---SCCCEEEEEECTTS
T ss_pred C--CCc--EEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCceeeEEecc---CCCceEEEEECCCC
Confidence 0 111 1122222 6667788887665 778888776543322111 11111223333 56
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
..++.|+.. +.|.+||+.+..
T Consensus 205 ~~l~~~~~d--------------~~i~iwd~~~~~ 225 (312)
T 4ery_A 205 KYILAATLD--------------NTLKLWDYSKGK 225 (312)
T ss_dssp SEEEEEETT--------------TEEEEEETTTTE
T ss_pred CEEEEEcCC--------------CeEEEEECCCCc
Confidence 666666542 458999988764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.25 Score=52.86 Aligned_cols=185 Identities=11% Similarity=0.146 Sum_probs=101.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
++.+++.|+. + +.+.+||..+.+-...-... .....++.+++.+++.|+.. ..+.+
T Consensus 142 d~~~l~~g~~--d-------g~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~l~sg~~d-----------g~i~v 197 (435)
T 1p22_A 142 DDQKIVSGLR--D-------NTIKIWDKNTLECKRILTGH----TGSVLCLQYDERVIITGSSD-----------STVRV 197 (435)
T ss_dssp CSSEEEEEES--S-------SCEEEEESSSCCEEEEECCC----SSCEEEEECCSSEEEEEETT-----------SCEEE
T ss_pred CCCEEEEEeC--C-------CeEEEEeCCCCeEEEEEcCC----CCcEEEEEECCCEEEEEcCC-----------CeEEE
Confidence 5677777773 2 36889999887654332211 11223344477777888753 34888
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe-ccCCCCCCCCCccce
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI-KPRFGSMWPSPRSGF 239 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v-~~~~~~~~P~~Rs~~ 239 (685)
||+.++.....-. .....-.++.+.+.+++.|+.+ ..|.+||+.+..-..+ ... .......
T Consensus 198 wd~~~~~~~~~~~----~h~~~v~~l~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~-----~~~~~~v 259 (435)
T 1p22_A 198 WDVNTGEMLNTLI----HHCEAVLHLRFNNGMMVTCSKD---------RSIAVWDMASPTDITLRRVL-----VGHRAAV 259 (435)
T ss_dssp EESSSCCEEEEEC----CCCSCEEEEECCTTEEEEEETT---------SCEEEEECSSSSCCEEEEEE-----CCCSSCE
T ss_pred EECCCCcEEEEEc----CCCCcEEEEEEcCCEEEEeeCC---------CcEEEEeCCCCCCceeeeEe-----cCCCCcE
Confidence 9998876543221 1222233444566677777753 4678888876542211 111 1111122
Q ss_pred eEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceeccc
Q 005655 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDME 319 (685)
Q Consensus 240 s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~ 319 (685)
..+..++..++.|+.++. +.+||+.+..-...-.. ......++..++.+++.|+..
T Consensus 260 ~~~~~~~~~l~s~~~dg~----------------i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~~g~~d--- 315 (435)
T 1p22_A 260 NVVDFDDKYIVSASGDRT----------------IKVWNTSTCEFVRTLNG-----HKRGIACLQYRDRLVVSGSSD--- 315 (435)
T ss_dssp EEEEEETTEEEEEETTSE----------------EEEEETTTCCEEEEEEC-----CSSCEEEEEEETTEEEEEETT---
T ss_pred EEEEeCCCEEEEEeCCCe----------------EEEEECCcCcEEEEEcC-----CCCcEEEEEeCCCEEEEEeCC---
Confidence 223336666777776654 77888876543332211 111223334466677777653
Q ss_pred CCccccccccCCcEEEEECCCCc
Q 005655 320 MKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 320 ~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+.|.+||+.+..
T Consensus 316 -----------g~i~iwd~~~~~ 327 (435)
T 1p22_A 316 -----------NTIRLWDIECGA 327 (435)
T ss_dssp -----------SCEEEEETTTCC
T ss_pred -----------CeEEEEECCCCC
Confidence 358999988754
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.24 Score=57.95 Aligned_cols=186 Identities=8% Similarity=0.048 Sum_probs=102.7
Q ss_pred cEEEEEcCCCcEEEecCCCCCCC-cceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~-R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
-|++||+.++++..+.......+ ..-.+++.. ++.|||-.. +.+++||+.++.|+.+.....+..
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~ 494 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------SALVRFNPEQRSFTTIEKEKDGTP 494 (795)
T ss_dssp EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------SCEEEEETTTTEEEECCBCTTCCB
T ss_pred ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------CceeEEeCCCCeEEEccccccccc
Confidence 58999999999887764321111 111222222 467776432 348899999999998764211111
Q ss_pred C--cc-ceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC-CCCCCCCCccceeEEEe-CCEEEEEec
Q 005655 180 R--SG-HRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR-FGSMWPSPRSGFQFFVY-QDEVFLYGG 253 (685)
Q Consensus 180 R--sg-h~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~-~~~~~P~~Rs~~s~~~~-~~~Iyv~GG 253 (685)
. .. .+++.- ++.||+-.. .-|++||+.+..+ .+... ....++.. .-.+++.. ++.|+|-.
T Consensus 495 ~~~~~i~~i~~d~~g~lWigt~-----------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT- 560 (795)
T 4a2l_A 495 VVSKQITTLFRDSHKRLWIGGE-----------EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCIYEASNGIIWVGT- 560 (795)
T ss_dssp CCCCCEEEEEECTTCCEEEEES-----------SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEEEECTTSCEEEEE-
T ss_pred cCCceEEEEEECCCCCEEEEeC-----------CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEEEECCCCCEEEEe-
Confidence 1 11 122222 567777432 3488899988888 44321 00001111 11222222 56676643
Q ss_pred ccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCc
Q 005655 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (685)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~nd 332 (685)
.. . +++||+.+.++........+|.... .+++.- ++.|++.+. +-
T Consensus 561 ~~-G----------------l~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t~----------------~G 606 (795)
T 4a2l_A 561 RE-G----------------FYCFNEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLSTN----------------RG 606 (795)
T ss_dssp SS-C----------------EEEEETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEET----------------TE
T ss_pred CC-C----------------ceeECCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEcC----------------Cc
Confidence 22 2 7899999999888754322343322 333333 567776552 23
Q ss_pred EEEEECCCCcEEEEEe
Q 005655 333 LYGFQLDNHRWYPLEL 348 (685)
Q Consensus 333 l~~yd~~t~~W~~l~~ 348 (685)
|.+||+.+.++..+..
T Consensus 607 l~~~~~~~~~~~~~~~ 622 (795)
T 4a2l_A 607 ISCFNPETEKFRNFTE 622 (795)
T ss_dssp EEEEETTTTEEEEECG
T ss_pred eEEEcCCCCcEEEcCC
Confidence 8899999988876654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.23 Score=52.66 Aligned_cols=204 Identities=10% Similarity=0.030 Sum_probs=106.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCC-CCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
++++.| ++.+|+.|+. + +.+++||+.+.+........ .+........+.+ ++.+|+.|+..
T Consensus 127 ~~~~s~--~~~~~~~~~~--~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d----- 190 (433)
T 3bws_A 127 SVRFID--NTRLAIPLLE--D-------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA----- 190 (433)
T ss_dssp CCEESS--SSEEEEEBTT--S-------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----
T ss_pred EEEEeC--CCeEEEEeCC--C-------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----
Confidence 556666 5778877762 1 35899999988776543221 0011112222333 57888887742
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
..+.+||+.+......-. .. ...-.+++.. ++.||+.++. -..|.+||+.+.+....-..
T Consensus 191 ------~~v~~~d~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~ 252 (433)
T 3bws_A 191 ------NAVHVFDLKTLAYKATVD--LT-GKWSKILLYDPIRDLVYCSNWI---------SEDISVIDRKTKLEIRKTDK 252 (433)
T ss_dssp ------TEEEEEETTTCCEEEEEE--CS-SSSEEEEEEETTTTEEEEEETT---------TTEEEEEETTTTEEEEECCC
T ss_pred ------CEEEEEECCCceEEEEEc--CC-CCCeeEEEEcCCCCEEEEEecC---------CCcEEEEECCCCcEEEEecC
Confidence 468899998866443221 11 1111223333 4466666543 24689999988765433221
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-
Q 005655 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~- 305 (685)
...-.+++.. ++..+++++.... .. ......+++||+.+..-...... +..-.++++.
T Consensus 253 -------~~~~~~~~~~~~g~~l~~~~~~~~--~~------~~~dg~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~ 312 (433)
T 3bws_A 253 -------IGLPRGLLLSKDGKELYIAQFSAS--NQ------ESGGGRLGIYSMDKEKLIDTIGP-----PGNKRHIVSGN 312 (433)
T ss_dssp -------CSEEEEEEECTTSSEEEEEEEESC--TT------CSCCEEEEEEETTTTEEEEEEEE-----EECEEEEEECS
T ss_pred -------CCCceEEEEcCCCCEEEEEECCCC--cc------ccCCCeEEEEECCCCcEEeeccC-----CCCcceEEECC
Confidence 1122333333 4445555554322 00 00124588999887754443211 1111233333
Q ss_pred CC-eEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 306 KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 306 ~~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
++ .+|+.++.. +.|.+||+.+.+-.
T Consensus 313 ~g~~l~~~~~~~--------------~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 313 TENKIYVSDMCC--------------SKIEVYDLKEKKVQ 338 (433)
T ss_dssp STTEEEEEETTT--------------TEEEEEETTTTEEE
T ss_pred CCCEEEEEecCC--------------CEEEEEECCCCcEE
Confidence 33 576665432 45999999876543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.75 Score=53.65 Aligned_cols=184 Identities=14% Similarity=0.186 Sum_probs=101.3
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcc-eeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~-~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
-+++||+.+++...+..... .+.. -.+++.. ++.|||... +.+++||..++.+..+.. +.+..
T Consensus 108 Gl~~yd~~~~~f~~~~~~~~-~~~~~i~~i~~d~~g~lwi~t~-------------~gl~~~~~~~~~~~~~~~-~~~~~ 172 (795)
T 4a2l_A 108 GLSRYDEEKDIFQNFFYEKN-GKHLQVNGIEEISPEQLLISTP-------------EGLIMFDIKESKFIDDSF-STAMH 172 (795)
T ss_dssp CEEEEETTTTEEEEECCEET-TEECCCCEEEEEETTEEEEEET-------------TEEEEEETTTTEEECSSS-CHHHH
T ss_pred chheeCCCCCeEEecccccc-CCCceEEEEEECCCCCEEEEEC-------------CceEEEECCCCEEEeccC-CCCCC
Confidence 48899999998887654211 1111 1223333 678887532 458899999888876543 11111
Q ss_pred CccceEEE-ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 180 Rsgh~~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
..-.+++. -++.|||. .. ...+++||+.+.++..+... +....-.+++.. ++.|+|.. ....
T Consensus 173 ~~i~~i~~d~~g~lwig-t~---------~~Gl~~~~~~~~~~~~~~~~-----~~~~~i~~i~~d~~g~lwigt-~~~G 236 (795)
T 4a2l_A 173 KTIASTLYRQGDQIYIG-TS---------TDGLYTYSITQKTFEKVIPI-----LGTKQIQAILQQSPTRIWVAT-EGAG 236 (795)
T ss_dssp TCCEEEEEEETTEEEEE-ES---------SSCEEEEETTTCCEEECC---------CCCEEEEEEEETTEEEEEE-BSSC
T ss_pred cceEEEEECCCCCEEEE-EC---------CCCEEEEeCCCCeEEEecCC-----CCCCeeEEEEEcCCCCEEEEE-CCCC
Confidence 10112222 37788883 21 13588999999988776432 111111223322 66777632 2222
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC---CcceeEEEEE-CCeEEEecceecccCCccccccccCCcE
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG---PRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~---~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (685)
+++||+.+.++.........|. ...-.+++.- ++.|+| |.. +-|
T Consensus 237 ----------------l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~---------------~Gl 284 (795)
T 4a2l_A 237 ----------------LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTF---------------NDL 284 (795)
T ss_dssp ----------------EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EES---------------SCE
T ss_pred ----------------eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeC---------------Chh
Confidence 8899999988887754211111 1112233332 556665 322 238
Q ss_pred EEEECCCCcEEEEEe
Q 005655 334 YGFQLDNHRWYPLEL 348 (685)
Q Consensus 334 ~~yd~~t~~W~~l~~ 348 (685)
++||+.+..|..+..
T Consensus 285 ~~~~~~~~~~~~~~~ 299 (795)
T 4a2l_A 285 NIYHEGTDSFASYSS 299 (795)
T ss_dssp EEEETTTTEEEEECC
T ss_pred heEcCCCCeEEEEec
Confidence 999999998887654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.014 Score=60.98 Aligned_cols=147 Identities=10% Similarity=0.105 Sum_probs=69.5
Q ss_pred EEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccc
Q 005655 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 74 ~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~ 152 (685)
+...| ++.+++.|+. + +.+.+||+.++.|..+..... ....-.+++.. ++.+++.|+..
T Consensus 17 ~~~s~--~g~~l~~~~~--d-------~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~d-------- 76 (377)
T 3dwl_C 17 HAFNS--QRTEFVTTTA--T-------NQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSNRIVTCSQD-------- 76 (377)
T ss_dssp CEECS--SSSEEECCCS--S-------SCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTCCEEEEETT--------
T ss_pred EEECC--CCCEEEEecC--C-------CEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCCEEEEEeCC--------
Confidence 44555 5677888873 2 357788888888877655431 11111222222 45677777643
Q ss_pred cccCeEEEEECCCCc-EEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc-eEEeccCC
Q 005655 153 HHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPRF 228 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~~~ 228 (685)
..+.+||+.+.. |..+.. ..........+.+ ++.+++.|+.+ ..+.+||+.+.. |..+....
T Consensus 77 ---~~v~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~ 142 (377)
T 3dwl_C 77 ---RNAYVYEKRPDGTWKQTLV--LLRLNRAATFVRWSPNEDKFAVGSGA---------RVISVCYFEQENDWWVSKHLK 142 (377)
T ss_dssp ---SSEEEC------CCCCEEE--CCCCSSCEEEEECCTTSSCCEEEESS---------SCEEECCC-----CCCCEEEC
T ss_pred ---CeEEEEEcCCCCceeeeeE--ecccCCceEEEEECCCCCEEEEEecC---------CeEEEEEECCcccceeeeEee
Confidence 347788888776 443332 1111122223333 45666777653 357777776654 32222221
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
. +....-.+++.. ++.+++.|+..+.
T Consensus 143 ~---~h~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 143 R---PLRSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp S---SCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred c---ccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence 0 111122233333 5667788877654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.3 Score=47.95 Aligned_cols=194 Identities=9% Similarity=0.039 Sum_probs=99.7
Q ss_pred cceEEEEeccCCCEEEE-EcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCC
Q 005655 70 SNCSLNINPLKETELIL-YGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~v-fGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
.-+++++.+ ++.||| .... .+.+++|++.+.....+.... ...-+++++. ++.|||... .
T Consensus 25 ~p~~i~~~~--~g~l~v~~~~~---------~~~i~~~~~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~--~-- 86 (270)
T 1rwi_B 25 SPSGVAVDS--AGNVYVTSEGM---------YGRVVKLATGSTGTTVLPFNG---LYQPQGLAVDGAGTVYVTDF--N-- 86 (270)
T ss_dssp CEEEEEECT--TCCEEEEECSS---------SCEEEEECC-----EECCCCS---CCSCCCEEECTTCCEEEEET--T--
T ss_pred CccceEECC--CCCEEEEccCC---------CCcEEEecCCCcccceEeeCC---cCCcceeEECCCCCEEEEcC--C--
Confidence 345556655 567888 4331 246888888776655443221 1122344444 467888754 1
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
+.+++||+.+.....+...+ ...-+++++. ++.||+.... ...|++|+..+........
T Consensus 87 --------~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~ 146 (270)
T 1rwi_B 87 --------NRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG---------NNRVVKLAAGSKTQTVLPF 146 (270)
T ss_dssp --------TEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG---------GTEEEEECTTCCSCEECCC
T ss_pred --------CEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC---------CCEEEEEECCCceeEeecc
Confidence 45889998877655443211 1122334443 5678886442 2468888776655443321
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE
Q 005655 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 227 ~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
. ....-.++++. ++.||+...... .+++|++.+..-......+ ...-.++++.
T Consensus 147 ~------~~~~p~~i~~~~~g~l~v~~~~~~----------------~i~~~~~~~~~~~~~~~~~----~~~p~~i~~d 200 (270)
T 1rwi_B 147 T------GLNDPDGVAVDNSGNVYVTDTDNN----------------RVVKLEAESNNQVVLPFTD----ITAPWGIAVD 200 (270)
T ss_dssp C------SCCSCCCEEECTTCCEEEEEGGGT----------------EEEEECTTTCCEEECCCSS----CCSEEEEEEC
T ss_pred c------cCCCceeEEEeCCCCEEEEECCCC----------------EEEEEecCCCceEeecccC----CCCceEEEEC
Confidence 1 00111234444 567887764432 3788888766543322111 1222344444
Q ss_pred -CCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
++.+|+.... .+.|++|++.+.
T Consensus 201 ~~g~l~v~~~~--------------~~~v~~~~~~~~ 223 (270)
T 1rwi_B 201 EAGTVYVTEHN--------------TNQVVKLLAGST 223 (270)
T ss_dssp TTCCEEEEETT--------------TSCEEEECTTCS
T ss_pred CCCCEEEEECC--------------CCcEEEEcCCCC
Confidence 4577776532 245888887654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.18 Score=52.51 Aligned_cols=196 Identities=12% Similarity=0.027 Sum_probs=103.5
Q ss_pred ceEEEEeccCCC-EEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC--CEEEEEcCccCCC
Q 005655 71 NCSLNINPLKET-ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSP 147 (685)
Q Consensus 71 ~~s~~~~p~~~~-~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~--~~iyvfGG~~~s~ 147 (685)
-.++...| ++ .+++.|+. + ..+.+||+.+.......... .....-.+++... +.+++.|+..
T Consensus 76 v~~~~~~~--~~~~~l~s~~~--d-------g~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d--- 140 (383)
T 3ei3_B 76 VTSLEWHP--THPTTVAVGSK--G-------GDIILWDYDVQNKTSFIQGM-GPGDAITGMKFNQFNTNQLFVSSIR--- 140 (383)
T ss_dssp EEEEEECS--SCTTEEEEEEB--T-------SCEEEEETTSTTCEEEECCC-STTCBEEEEEEETTEEEEEEEEETT---
T ss_pred EEEEEECC--CCCCEEEEEcC--C-------CeEEEEeCCCcccceeeecC-CcCCceeEEEeCCCCCCEEEEEeCC---
Confidence 34555665 44 68888873 2 36889999988776543321 1122223344444 3666666642
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
..+.+||+.+.....+... ........++.+ ++.+++.|+.+ ..|.+||+....-..+.
T Consensus 141 --------~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~ 201 (383)
T 3ei3_B 141 --------GATTLRDFSGSVIQVFAKT--DSWDYWYCCVDVSVSRQMLATGDST---------GRLLLLGLDGHEIFKEK 201 (383)
T ss_dssp --------TEEEEEETTSCEEEEEECC--CCSSCCEEEEEEETTTTEEEEEETT---------SEEEEEETTSCEEEEEE
T ss_pred --------CEEEEEECCCCceEEEecc--CCCCCCeEEEEECCCCCEEEEECCC---------CCEEEEECCCCEEEEec
Confidence 4578899988776665441 111111222222 55666777643 46888998544433333
Q ss_pred cCCCCCCCCCccceeEEEe-CCE-EEEEecccCCCCcccCCCCCCceeeeEEEEeCCC----ceeEEeecCCCCCCCcce
Q 005655 226 PRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT----WEWSKVKKIGMPPGPRAG 299 (685)
Q Consensus 226 ~~~~~~~P~~Rs~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t----~~W~~~~~~g~~P~~R~g 299 (685)
.. .. .-.+++.. ++. +++.|+.++. +.+||+.+ ........ ....-
T Consensus 202 ~h-----~~--~v~~~~~~~~~~~~l~s~~~d~~----------------i~iwd~~~~~~~~~~~~~~~-----~~~~v 253 (383)
T 3ei3_B 202 LH-----KA--KVTHAEFNPRCDWLMATSSVDAT----------------VKLWDLRNIKDKNSYIAEMP-----HEKPV 253 (383)
T ss_dssp CS-----SS--CEEEEEECSSCTTEEEEEETTSE----------------EEEEEGGGCCSTTCEEEEEE-----CSSCE
T ss_pred cC-----CC--cEEEEEECCCCCCEEEEEeCCCE----------------EEEEeCCCCCcccceEEEec-----CCCce
Confidence 22 11 11223333 333 7788877654 67777765 32222211 11112
Q ss_pred eEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 300 ~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
.++++. ++.+++.|+.. +.|.+||+.+..
T Consensus 254 ~~~~~s~~~~~~l~~~~~d--------------~~i~iwd~~~~~ 284 (383)
T 3ei3_B 254 NAAYFNPTDSTKLLTTDQR--------------NEIRVYSSYDWS 284 (383)
T ss_dssp EEEEECTTTSCEEEEEESS--------------SEEEEEETTBTT
T ss_pred EEEEEcCCCCCEEEEEcCC--------------CcEEEEECCCCc
Confidence 233333 45677777653 358899987653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.57 Score=52.74 Aligned_cols=120 Identities=11% Similarity=0.099 Sum_probs=67.8
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEc-CCC--cEEEecCCCC---CCC---cceeEEEEECCEEEEEcCccCCCCCcc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~-~~~--~W~~l~s~~~---P~~---R~~ha~v~~~~~iyvfGG~~~s~~~~~ 151 (685)
++.||+.... .+.|++||. .+. .|+.-..... +.+ ....+.++.++.||+...
T Consensus 62 ~g~vyv~~~~---------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------- 123 (571)
T 2ad6_A 62 GDMMYVHSAF---------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--------- 123 (571)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred CCEEEEEeCC---------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---------
Confidence 7888887651 246999999 776 5886432210 000 112234566888888643
Q ss_pred ccccCeEEEEECCCC--cEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEec
Q 005655 152 FHHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~--~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (685)
-..++.+|..|+ .|+.-............+.++.++.||+-.+.... .....|+.||+.+.+ |+.-.
T Consensus 124 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 ---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL----GVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG----TCCCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCcc----CCCCEEEEEECCCCcEEEEEcc
Confidence 146899999887 48753221000011122334568888775432110 113578999998754 87544
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.35 Score=55.23 Aligned_cols=194 Identities=8% Similarity=0.031 Sum_probs=100.6
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCC-cEEEcccCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGCP 177 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~-~W~~~~~~g~P 177 (685)
..+++||+.+.+...+.... ........+.+ ++..++++...... ....++++|+.+. .+..+.....+
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~------~~~~v~~~d~~~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGE--PKEKFLTNLSWSPDENILYVAEVNRAQ------NECKVNAYDAETGRFVRTLFVETDK 306 (706)
T ss_dssp EEEEEEETTTTEEEECCCCS--CTTCEEEEEEECTTSSEEEEEEECTTS------CEEEEEEEETTTCCEEEEEEEEECS
T ss_pred eEEEEEECCCCceEeeccCC--CCceeEeeEEEECCCCEEEEEEeCCCC------CeeEEEEEECCCCceeeEEEEccCC
Confidence 57999999998876665321 11122222333 45444444332211 2357999999998 77665431111
Q ss_pred CCC-ccceEEE-E--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccc-eeEEEeCCEEEEEe
Q 005655 178 SPR-SGHRMVL-Y--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG-FQFFVYQDEVFLYG 252 (685)
Q Consensus 178 ~~R-sgh~~v~-~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~-~s~~~~~~~Iyv~G 252 (685)
... ....++. - ++.+++.+...+ ...||.+|........+... ...... .++...+..||+.+
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g-------~~~l~~~~~~~~~~~~l~~~-----~~~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRDG-------WNHLYLYDTTGRLIRQVTKG-----EWEVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTTS-------SCEEEEEETTSCEEEECCCS-----SSCEEEEEEECTTSSEEEEEE
T ss_pred CeECccCCceeecCCCCEEEEEEccCC-------ccEEEEEECCCCEEEecCCC-----CeEEEeeeEEcCCCCEEEEEe
Confidence 110 0012222 2 567555554322 35789999777666666432 222222 11111244566665
Q ss_pred cccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCC
Q 005655 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLN 331 (685)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~n 331 (685)
.... .....+|.+|+.+.....+.. ....+++++- +++.+++..... ....
T Consensus 375 ~~~~------------~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~----------~~p~ 426 (706)
T 2z3z_A 375 TEAS------------PLERHFYCIDIKGGKTKDLTP------ESGMHRTQLSPDGSAIIDIFQSP----------TVPR 426 (706)
T ss_dssp SSSC------------TTCBEEEEEETTCCCCEESCC------SSSEEEEEECTTSSEEEEEEECS----------SCSC
T ss_pred cCCC------------CceEEEEEEEcCCCCceeccC------CCceEEEEECCCCCEEEEEecCC----------CCCc
Confidence 4422 112458999988877665542 1112333333 566666664432 1245
Q ss_pred cEEEEECCCCc
Q 005655 332 ELYGFQLDNHR 342 (685)
Q Consensus 332 dl~~yd~~t~~ 342 (685)
.+++||+.+..
T Consensus 427 ~i~l~d~~~~~ 437 (706)
T 2z3z_A 427 KVTVTNIGKGS 437 (706)
T ss_dssp EEEEEESSSCE
T ss_pred EEEEEECCCCe
Confidence 69999998887
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.032 Score=60.06 Aligned_cols=116 Identities=11% Similarity=0.080 Sum_probs=62.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
.++...|. ++.+++.|+. + ..|.+||+.+.....+.... .....-.+++.. ++.+++.||.+.
T Consensus 123 ~~l~~~P~-~~~~lasGs~--d-------g~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~~~~~l~s~s~D~---- 187 (435)
T 4e54_B 123 TSLAWHPT-HPSTVAVGSK--G-------GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEG---- 187 (435)
T ss_dssp EEEEECSS-CTTCEEEEET--T-------SCEEEECSSCCSCCEEECCC-SSSCCCCEEEECSSCTTEEEEECSSS----
T ss_pred EEEEEeCC-CCCEEEEEeC--C-------CEEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCCCCCEEEEEeCCC----
Confidence 35666664 3568888873 3 35888898776543332211 011111233332 455667776543
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.+-+||+.++....+.... .......++... ++.+++.|+.. ..|.+||+...
T Consensus 188 -------~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~d---------g~i~~wd~~~~ 241 (435)
T 4e54_B 188 -------TTRLQDFKGNILRVFASSD-TINIWFCSLDVSASSRMVVTGDNV---------GNVILLNMDGK 241 (435)
T ss_dssp -------CEEEEETTSCEEEEEECCS-SCSCCCCCEEEETTTTEEEEECSS---------SBEEEEESSSC
T ss_pred -------EEEEeeccCCceeEEeccC-CCCccEEEEEECCCCCEEEEEeCC---------CcEeeeccCcc
Confidence 3678898887665554311 111112222222 56777777753 35788887654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.22 Score=50.79 Aligned_cols=129 Identities=12% Similarity=0.018 Sum_probs=70.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++++.| ++.||+.+.. .+.|++||+.++++..+... ....-++++.. ++.+||.+.....
T Consensus 48 ~~~~~~~--~g~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~---~~~~~~~i~~~~dg~l~v~~~~~~~---- 109 (333)
T 2dg1_A 48 EGLNFDR--QGQLFLLDVF---------EGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDFK---- 109 (333)
T ss_dssp EEEEECT--TSCEEEEETT---------TCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTSS----
T ss_pred cCcEECC--CCCEEEEECC---------CCEEEEEeCCCCcEEEEeeC---CCCCcceEEECCCCcEEEEeCCCCC----
Confidence 4455555 5778887652 13689999999988765421 12223344443 5778887543211
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
....+++||+.+.....+... ......-..+++. ++.||+....... ......|++||+.+.+...+.
T Consensus 110 ---~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~---~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 110 ---STGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYS---TNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp ---SCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBT---TBCCEEEEEECTTSCCEEEEE
T ss_pred ---CCceEEEEeCCCCEEEEEEcc-CccCCcccceEECCCCCEEEEeccccc---cCCCceEEEEeCCCCEEEEee
Confidence 124799999998876633221 1111111222222 5677775432110 012357899998877666553
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.27 Score=51.33 Aligned_cols=176 Identities=5% Similarity=-0.075 Sum_probs=86.0
Q ss_pred ccEEEEEcCCCcEEEecCCCCCC------------CcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcE
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPP------------PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW 168 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~------------~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W 168 (685)
+.+.+||+.+......-...... .....+++..++..+++|+.. ..+.+||+.+..-
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~i~~~d~~~~~~ 239 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-----------GAIFVYQITEKTP 239 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG-----------GCEEEEETTCSSC
T ss_pred CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC-----------CeEEEEEcCCCce
Confidence 35778888777654322211000 000223333334446666643 4588999887642
Q ss_pred EEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CC
Q 005655 169 EQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD 246 (685)
Q Consensus 169 ~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~ 246 (685)
...-. .... .-.+++.. ++.+++.|+.. ..+.+||+.+......-.. ....-.+++.. ++
T Consensus 240 ~~~~~--~~~~-~i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~ 301 (425)
T 1r5m_A 240 TGKLI--GHHG-PISVLEFNDTNKLLLSASDD---------GTLRIWHGGNGNSQNCFYG------HSQSIVSASWVGDD 301 (425)
T ss_dssp SEEEC--CCSS-CEEEEEEETTTTEEEEEETT---------SCEEEECSSSBSCSEEECC------CSSCEEEEEEETTT
T ss_pred eeeec--cCCC-ceEEEEECCCCCEEEEEcCC---------CEEEEEECCCCccceEecC------CCccEEEEEECCCC
Confidence 21111 0111 11222222 55566666643 3578888876543222211 11122333334 44
Q ss_pred EEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCcccc
Q 005655 247 EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVI 325 (685)
Q Consensus 247 ~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~ 325 (685)
+++.|+..+. +.+||+.+..-...... ....-.++++. ++.++++|+..
T Consensus 302 -~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~d--------- 351 (425)
T 1r5m_A 302 -KVISCSMDGS----------------VRLWSLKQNTLLALSIV----DGVPIFAGRISQDGQKYAVAFMD--------- 351 (425)
T ss_dssp -EEEEEETTSE----------------EEEEETTTTEEEEEEEC----TTCCEEEEEECTTSSEEEEEETT---------
T ss_pred -EEEEEeCCCc----------------EEEEECCCCcEeEeccc----CCccEEEEEEcCCCCEEEEEECC---------
Confidence 7777776544 78888877654333221 11112233333 56677777643
Q ss_pred ccccCCcEEEEECCC
Q 005655 326 MSLFLNELYGFQLDN 340 (685)
Q Consensus 326 ~~~~~ndl~~yd~~t 340 (685)
+.|.+||+.+
T Consensus 352 -----g~i~i~~~~~ 361 (425)
T 1r5m_A 352 -----GQVNVYDLKK 361 (425)
T ss_dssp -----SCEEEEECHH
T ss_pred -----CeEEEEECCC
Confidence 3488888764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.76 Score=47.77 Aligned_cols=194 Identities=9% Similarity=-0.034 Sum_probs=97.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.++++|+. + ..+.+||........+... ...-.+++.. ++..+++|+..
T Consensus 112 ~~~~~s~--~~~~l~~~~~--d-------g~i~i~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d------ 170 (425)
T 1r5m_A 112 TCLAWSH--DGNSIVTGVE--N-------GELRLWNKTGALLNVLNFH----RAPIVSVKWNKDGTHIISMDVE------ 170 (425)
T ss_dssp EEEEECT--TSSEEEEEET--T-------SCEEEEETTSCEEEEECCC----CSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEEEcC--CCCEEEEEeC--C-------CeEEEEeCCCCeeeeccCC----CccEEEEEECCCCCEEEEEecC------
Confidence 3445555 5677777763 2 3578888555544444321 1122333333 45556666542
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCC--------------ccceEEEECCEEEEEccccCCCCceeeeceEEEEEc
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPR--------------SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R--------------sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (685)
..+.+||+.+......-. .+... .-.+++...+..+++|+.. ..|.+||+
T Consensus 171 -----~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~i~~~d~ 234 (425)
T 1r5m_A 171 -----NVTILWNVISGTVMQHFE--LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK---------GAIFVYQI 234 (425)
T ss_dssp -----CCEEEEETTTTEEEEEEC--CC---------------CCCBSCCEEEETTEEEEECGG---------GCEEEEET
T ss_pred -----CeEEEEECCCCcEEEEee--ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC---------CeEEEEEc
Confidence 357788988776543322 11111 0223333444456666643 46889998
Q ss_pred CCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC
Q 005655 217 DQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG 295 (685)
Q Consensus 217 ~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~ 295 (685)
.+..-...-.. ....-.+++.. ++.+++.|+..+. +.+||+.+......-. ..
T Consensus 235 ~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~----~~ 288 (425)
T 1r5m_A 235 TEKTPTGKLIG------HHGPISVLEFNDTNKLLLSASDDGT----------------LRIWHGGNGNSQNCFY----GH 288 (425)
T ss_dssp TCSSCSEEECC------CSSCEEEEEEETTTTEEEEEETTSC----------------EEEECSSSBSCSEEEC----CC
T ss_pred CCCceeeeecc------CCCceEEEEECCCCCEEEEEcCCCE----------------EEEEECCCCccceEec----CC
Confidence 87543222111 11111223333 5567777776654 7778876643322211 11
Q ss_pred CcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 296 PRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 296 ~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
...-.++++..+.+++.|+.. ..|.+||+.+..
T Consensus 289 ~~~i~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~ 321 (425)
T 1r5m_A 289 SQSIVSASWVGDDKVISCSMD--------------GSVRLWSLKQNT 321 (425)
T ss_dssp SSCEEEEEEETTTEEEEEETT--------------SEEEEEETTTTE
T ss_pred CccEEEEEECCCCEEEEEeCC--------------CcEEEEECCCCc
Confidence 222344455533366666542 358899987764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.76 Score=46.70 Aligned_cols=207 Identities=7% Similarity=-0.035 Sum_probs=98.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.+++.|+. + +.+.+||+.+..-...-.. ....-.+++.. ++.+++.|+..
T Consensus 36 ~~~~~s~--~~~~l~~~~~--d-------g~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d------ 95 (369)
T 3zwl_B 36 TQVKYNK--EGDLLFSCSK--D-------SSASVWYSLNGERLGTLDG---HTGTIWSIDVDCFTKYCVTGSAD------ 95 (369)
T ss_dssp EEEEECT--TSCEEEEEES--S-------SCEEEEETTTCCEEEEECC---CSSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEEEcC--CCCEEEEEeC--C-------CEEEEEeCCCchhhhhhhh---cCCcEEEEEEcCCCCEEEEEeCC------
Confidence 3445555 5667777762 2 3688999887765432221 11112223333 45666666642
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCc----eEEec
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK----WQEIK 225 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~----W~~v~ 225 (685)
..+.+||+.+......-. .+.+ -.+++.. ++.+++.++..... ....+.+||+.+.. +....
T Consensus 96 -----g~i~iwd~~~~~~~~~~~--~~~~--v~~~~~~~~~~~l~~~~~~~~~----~~g~i~~~d~~~~~~~~~~~~~~ 162 (369)
T 3zwl_B 96 -----YSIKLWDVSNGQCVATWK--SPVP--VKRVEFSPCGNYFLAILDNVMK----NPGSINIYEIERDSATHELTKVS 162 (369)
T ss_dssp -----TEEEEEETTTCCEEEEEE--CSSC--EEEEEECTTSSEEEEEECCBTT----BCCEEEEEEEEECTTTCCEEEEC
T ss_pred -----CeEEEEECCCCcEEEEee--cCCC--eEEEEEccCCCEEEEecCCccC----CCCEEEEEEecCCccceeecccc
Confidence 458899998876544332 1111 1122222 45555555532111 12456777665432 22211
Q ss_pred cCCCCCCC--CCc-cceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC-ceeEEeecCCCCCCCccee
Q 005655 226 PRFGSMWP--SPR-SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAGF 300 (685)
Q Consensus 226 ~~~~~~~P--~~R-s~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~~~~~g~~P~~R~g~ 300 (685)
..+...+. ... .-.+++.. ++.+++.|+..+. +.+||+.+ ..-...... ....-.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~----~~~~v~ 222 (369)
T 3zwl_B 163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK----------------ISKYDVSNNYEYVDSIDL----HEKSIS 222 (369)
T ss_dssp SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE----------------EEEEETTTTTEEEEEEEC----CSSCEE
T ss_pred cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE----------------EEEEECCCCcEeEEEEec----CCCcee
Confidence 11000000 000 11122222 5566777776544 78889876 332222211 111223
Q ss_pred EEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 301 SMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 301 s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
++++. ++.+++.|+.. ..|.+||+.+.....
T Consensus 223 ~~~~~~~~~~l~~~~~d--------------~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 223 DMQFSPDLTYFITSSRD--------------TNSFLVDVSTLQVLK 254 (369)
T ss_dssp EEEECTTSSEEEEEETT--------------SEEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEecCC--------------ceEEEEECCCCceee
Confidence 34443 56666766542 358899988765443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.21 Score=52.80 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=89.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCc
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS 181 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs 181 (685)
.+.+||+.+......-.. ......++.+++.+++.|+.. ..+.+||+.+..-......+ ...
T Consensus 157 ~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~---~~~ 218 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMAG----HQARVGCLSWNRHVLSSGSRS-----------GAIHHHDVRIANHQIGTLQG---HSS 218 (401)
T ss_dssp CEEEEETTTCCEEEEECC----CSSCEEEEEEETTEEEEEETT-----------SEEEEEETTSSSCEEEEEEC---CSS
T ss_pred eEEEEECcCCeEEEEecC----CCCceEEEEECCCEEEEEcCC-----------CCEEEEecccCcceeeEEcC---CCC
Confidence 578888887764432221 111222333355666677643 45888888743322111111 111
Q ss_pred cceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEec--ccCC
Q 005655 182 GHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGG--YSKE 257 (685)
Q Consensus 182 gh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG--~~~~ 257 (685)
....+.+ ++.+++.|+.+ ..|.+||+.+..-...-.. . ..+....++...+..+++.|| ..+
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~-~---~~~v~~~~~~p~~~~ll~~~~gs~d~- 284 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGND---------NVVQIWDARSSIPKFTKTN-H---NAAVKAVAWCPWQSNLLATGGGTMDK- 284 (401)
T ss_dssp CEEEEEECTTSSEEEEEETT---------SCEEEEETTCSSEEEEECC-C---SSCCCEEEECTTSTTEEEEECCTTTC-
T ss_pred CeeEEEEcCCCCEEEEEeCC---------CeEEEccCCCCCccEEecC-C---cceEEEEEECCCCCCEEEEecCCCCC-
Confidence 1222333 56677777753 4688999887543322111 0 112222222222556777775 333
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEE-ecceecccCCccccccccCCcEEE
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL-FGGVVDMEMKGDVIMSLFLNELYG 335 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv-fGG~~~~~~~~~~~~~~~~ndl~~ 335 (685)
.+.+||+.+..-...-.. ...-.++++. ++..++ .+|..+ +.|.+
T Consensus 285 ---------------~i~i~d~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~d-------------g~i~v 331 (401)
T 4aez_A 285 ---------------QIHFWNAATGARVNTVDA-----GSQVTSLIWSPHSKEIMSTHGFPD-------------NNLSI 331 (401)
T ss_dssp ---------------EEEEEETTTCCEEEEEEC-----SSCEEEEEECSSSSEEEEEECTTT-------------CEEEE
T ss_pred ---------------EEEEEECCCCCEEEEEeC-----CCcEEEEEECCCCCeEEEEeecCC-------------CcEEE
Confidence 377888876654433221 1112233333 444444 434322 45899
Q ss_pred EECCCCcEEEEE
Q 005655 336 FQLDNHRWYPLE 347 (685)
Q Consensus 336 yd~~t~~W~~l~ 347 (685)
||+.+.....+.
T Consensus 332 ~~~~~~~~~~~~ 343 (401)
T 4aez_A 332 WSYSSSGLTKQV 343 (401)
T ss_dssp EEEETTEEEEEE
T ss_pred EecCCccceeEE
Confidence 998887666543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.26 Score=51.00 Aligned_cols=190 Identities=9% Similarity=0.092 Sum_probs=96.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.+++.||. + ..+.+||..++.|.............-.+++.. ++.+++.|+...
T Consensus 20 ~~l~~sp--~g~~las~~~--D-------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~----- 83 (345)
T 3fm0_A 20 WFLAWNP--AGTLLASCGG--D-------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA----- 83 (345)
T ss_dssp EEEEECT--TSSCEEEEET--T-------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS-----
T ss_pred EEEEECC--CCCEEEEEcC--C-------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC-----
Confidence 4566676 6778888873 2 357888888888763221100011112222222 466777777533
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC-ceEEeccC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIKPR 227 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~~~ 227 (685)
.+.+||..+..+..+.. +......-..+.+ ++.+++.|+.+ ..|.+||+.+. .+..+...
T Consensus 84 ------~v~iw~~~~~~~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 84 ------TTCIWKKNQDDFECVTT--LEGHENEVKSVAWAPSGNLLATCSRD---------KSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp ------CEEEEEECCC-EEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEECTTSCEEEEEEE
T ss_pred ------cEEEEEccCCCeEEEEE--ccCCCCCceEEEEeCCCCEEEEEECC---------CeEEEEECCCCCCeEEEEEe
Confidence 36677777776655443 1111111223333 56677777753 35778887654 23333322
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-
Q 005655 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~- 305 (685)
.. ....-.+++.. ++.+++.|+..+. +.+||..+..|..+..... ....-.++++.
T Consensus 147 ~~----h~~~v~~~~~~p~~~~l~s~s~d~~----------------i~~w~~~~~~~~~~~~~~~--h~~~v~~l~~sp 204 (345)
T 3fm0_A 147 NS----HTQDVKHVVWHPSQELLASASYDDT----------------VKLYREEEDDWVCCATLEG--HESTVWSLAFDP 204 (345)
T ss_dssp CC----CCSCEEEEEECSSSSCEEEEETTSC----------------EEEEEEETTEEEEEEEECC--CSSCEEEEEECT
T ss_pred cC----cCCCeEEEEECCCCCEEEEEeCCCc----------------EEEEEecCCCEEEEEEecC--CCCceEEEEECC
Confidence 11 01111122222 5667778877655 6677877777765443211 11112233333
Q ss_pred CCeEEEeccee
Q 005655 306 KKRALLFGGVV 316 (685)
Q Consensus 306 ~~~iyvfGG~~ 316 (685)
+++.++.|+..
T Consensus 205 ~g~~l~s~s~D 215 (345)
T 3fm0_A 205 SGQRLASCSDD 215 (345)
T ss_dssp TSSEEEEEETT
T ss_pred CCCEEEEEeCC
Confidence 56677777653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=95.84 E-value=0.41 Score=49.12 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=55.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.+++.|+. + ..+.+||+.+.++....... .....-.+++.. ++.++++|+...
T Consensus 56 ~~~~~~~--~~~~l~~~~~--d-------g~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~----- 118 (372)
T 1k8k_C 56 TGVDWAP--DSNRIVTCGT--D-------RNAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEKKFAVGSGSR----- 118 (372)
T ss_dssp EEEEEET--TTTEEEEEET--T-------SCEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSSEEEEEETTS-----
T ss_pred cEEEEeC--CCCEEEEEcC--C-------CeEEEEECCCCeeeeeEEee-cCCCceeEEEECCCCCEEEEEeCCC-----
Confidence 3455555 4666677662 2 35888999888876443221 111222223333 456667776432
Q ss_pred cccccCeEEEEECCCCc-EEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 151 RFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
.+.+||+.+.. |........+....-.+++.. ++.+++.|+.. ..+.+||+.
T Consensus 119 ------~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~ 172 (372)
T 1k8k_C 119 ------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD---------FKCRIFSAY 172 (372)
T ss_dssp ------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT---------SCEEEEECC
T ss_pred ------EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC---------CCEEEEEcc
Confidence 35555554443 332222101111111222222 55677777753 357788854
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.5 Score=46.18 Aligned_cols=187 Identities=8% Similarity=0.025 Sum_probs=100.0
Q ss_pred eccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCC-CcEEEcccCCCC
Q 005655 100 YGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-NQWEQLNLKGCP 177 (685)
Q Consensus 100 ~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t-~~W~~~~~~g~P 177 (685)
-..+++||+.++....+... ...-.+++.. ++..+++++. ..+++||+.+ .....+.. .+
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~------------~~i~~~d~~~~~~~~~~~~--~~ 82 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT----PELFEAPNWSPDGKYLLLNSE------------GLLYRLSLAGDPSPEKVDT--GF 82 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE----SSCCEEEEECTTSSEEEEEET------------TEEEEEESSSCCSCEECCC--TT
T ss_pred ceeEEEEeCCCCceeeeccC----CcceEeeEECCCCCEEEEEcC------------CeEEEEeCCCCCCceEecc--cc
Confidence 35799999999887765432 1112233333 4555566531 4699999998 87776653 12
Q ss_pred C-CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecc
Q 005655 178 S-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (685)
Q Consensus 178 ~-~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~ 254 (685)
. .........-++..+++++.... ....||.+++.+.....+... . + .+.+... +..|++.++.
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~-----~-~--~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVEF-----GKSAIYLLPSTGGTPRLMTKN-----L-P--SYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTTT-----SSCEEEEEETTCCCCEECCSS-----S-S--EEEEEECTTSSEEEEEEEE
T ss_pred ccccccceEECCCCCEEEEEEeCCC-----CcceEEEEECCCCceEEeecC-----C-C--ccceEECCCCCEEEEEECC
Confidence 1 12222222225566666653221 146799999888776555433 1 1 2222333 4445545544
Q ss_pred cCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcE
Q 005655 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (685)
... ..+|.+++.+.....+... ...-.++++. +++.+++++..+ ....|
T Consensus 150 ~~~--------------~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~-----------~~~~i 199 (297)
T 2ojh_A 150 DQV--------------FDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPDGRWIYFNSSRT-----------GQMQI 199 (297)
T ss_dssp TTE--------------EEEEEEETTTCCEEECCCS-----SSCEEEEEECTTSSEEEEEECTT-----------SSCEE
T ss_pred CCc--------------eEEEEEECCCCcceEcccC-----CCccccceECCCCCEEEEEecCC-----------CCccE
Confidence 321 3588888877766555331 1112233333 555555544321 13568
Q ss_pred EEEECCCCcEEEEE
Q 005655 334 YGFQLDNHRWYPLE 347 (685)
Q Consensus 334 ~~yd~~t~~W~~l~ 347 (685)
|.+++.+.....+.
T Consensus 200 ~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 200 WRVRVDGSSVERIT 213 (297)
T ss_dssp EEEETTSSCEEECC
T ss_pred EEECCCCCCcEEEe
Confidence 88887776655443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.79 E-value=2.1 Score=44.07 Aligned_cols=174 Identities=14% Similarity=0.090 Sum_probs=88.8
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
.+.+|++|- .+ -+++..-.-.+|+.+.....+......++++.++.+|+.|.. ..+++
T Consensus 46 ~~~~~~~G~---~g-------~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~------------g~i~~ 103 (327)
T 2xbg_A 46 RHHGWLVGV---NA-------TLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP------------PIMLH 103 (327)
T ss_dssp SSCEEEEET---TT-------EEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET------------TEEEE
T ss_pred CCcEEEEcC---CC-------eEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC------------CeEEE
Confidence 467888653 11 244432234589988653211122334445557888887521 23444
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEE-ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccce
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~ 239 (685)
-.-.-.+|+.+.... +.+-..+.++. -++.+|+.|.. ..|++-.=.-.+|+.+... .+..-+
T Consensus 104 S~DgG~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~----------g~v~~S~DgG~tW~~~~~~------~~~~~~ 166 (327)
T 2xbg_A 104 TTDGGQSWSQIPLDP-KLPGSPRLIKALGNGSAEMITNV----------GAIYRTKDSGKNWQALVQE------AIGVMR 166 (327)
T ss_dssp ESSTTSSCEECCCCT-TCSSCEEEEEEEETTEEEEEETT----------CCEEEESSTTSSEEEEECS------CCCCEE
T ss_pred ECCCCCCceECcccc-CCCCCeEEEEEECCCCEEEEeCC----------ccEEEEcCCCCCCEEeecC------CCcceE
Confidence 222246899987521 11112233433 36788887641 1233322234679998754 122334
Q ss_pred eEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEe-CCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecc
Q 005655 240 QFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD-PRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (685)
Q Consensus 240 s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd-~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG 314 (685)
+++.. ++.+|++|- .+. +++-. ....+|+.+.. +.+...+.+++. ++.+|+++.
T Consensus 167 ~~~~~~~~~~~~~g~-~G~----------------~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~ 223 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSS-RGS----------------FYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVN 223 (327)
T ss_dssp EEEECTTSCEEEEET-TSS----------------EEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEET
T ss_pred EEEEcCCCcEEEEEC-CCc----------------EEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeC
Confidence 44444 556666553 222 34433 33678999853 233444555543 567777653
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.5 Score=53.45 Aligned_cols=226 Identities=13% Similarity=-0.005 Sum_probs=118.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCC-CceeeeccEEEEEcCC------CcEEEec-CCCCCCCcceeEEEEE-CCEEEEEcC
Q 005655 72 CSLNINPLKETELILYGGEFYNG-NKTYVYGDLYRYDVEK------QEWKVIS-SPNSPPPRSAHQAVSW-KNYLYIFGG 142 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g-~~~~~~ndv~~yd~~~------~~W~~l~-s~~~P~~R~~ha~v~~-~~~iyvfGG 142 (685)
.+++..| +++.++++...... ........+|++|+.+ ...+.+. ... ...+..+.- +++.+++..
T Consensus 133 ~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 133 ADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH----RFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp EEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS----SEECCCEECTTSSEEEEEE
T ss_pred cCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC----CcccCceECCCCCEEEEEE
Confidence 3455566 55555555532100 0012346899999998 7777665 321 111222222 454444444
Q ss_pred ccCCCCCccccccCeEEEEECC-CC---cEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEc
Q 005655 143 EFTSPNQERFHHYKDFWMLDLK-TN---QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~-t~---~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (685)
....... .....+|++|+. ++ ....+... . ........+ +++||+.+...+ ...||.+|+
T Consensus 207 ~~~~~~~---~~~~~i~~~d~~~~g~~~~~~~l~~~--~--~~~~~~~~~spdg~l~~~~~~~~-------~~~l~~~~~ 272 (662)
T 3azo_A 207 WDHPRMP---WEGTELKTARVTEDGRFADTRTLLGG--P--EEAIAQAEWAPDGSLIVATDRTG-------WWNLHRVDP 272 (662)
T ss_dssp ECTTCCT---TTCEEEEEEEECTTSCEEEEEEEEEE--T--TBCEEEEEECTTSCEEEEECTTS-------SCEEEEECT
T ss_pred CCCCCCC---CCCcEEEEEEECCCCcccccEEeCCC--C--CceEcceEECCCCeEEEEECCCC-------CeEEEEEEC
Confidence 3221110 112579999998 56 44444331 1 112223333 567776655432 247999999
Q ss_pred CCCceEEeccCCCCC-CCCCcc-ceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCC
Q 005655 217 DQFKWQEIKPRFGSM-WPSPRS-GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (685)
Q Consensus 217 ~t~~W~~v~~~~~~~-~P~~Rs-~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~ 293 (685)
.+..+..+....... .|.-.. ..+++.. ++.+++.+.. +. ..+|.+|+.+.....+..
T Consensus 273 ~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~--------------~~l~~~d~~~~~~~~l~~---- 333 (662)
T 3azo_A 273 ATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA--------------AVLGILDPESGELVDAAG---- 333 (662)
T ss_dssp TTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS--------------CEEEEEETTTTEEEECCS----
T ss_pred CCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc--------------cEEEEEECCCCcEEEecC----
Confidence 888888876542111 011111 1233333 6677766654 32 358889988887766643
Q ss_pred CCCcceeEE-EEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 294 PGPRAGFSM-CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 294 P~~R~g~s~-~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+. ....++ ..-++.+++..+..+ ....||.+|+.+.....+..
T Consensus 334 ~~-~~~~~~~s~~~~~~~~~~~~~~-----------~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 334 PW-TEWAATLTVSGTRAVGVAASPR-----------TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp SC-CEEEEEEEEETTEEEEEEEETT-----------EEEEEEEEETTTCCEEEEES
T ss_pred CC-CeEEEEEecCCCEEEEEEcCCC-----------CCCEEEEEECCCCceEEeec
Confidence 11 112223 344666666554322 13569999999988877653
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.71 E-value=1.1 Score=47.77 Aligned_cols=154 Identities=11% Similarity=0.053 Sum_probs=78.0
Q ss_pred ECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEE
Q 005655 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 133 ~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
+++..++.|+.. +.+.+||+.+..-...-. .......++.+.+.+++.|+.+ ..|.
T Consensus 287 ~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~l~~~~~d---------g~i~ 342 (445)
T 2ovr_B 287 FDGIHVVSGSLD-----------TSIRVWDVETGNCIHTLT----GHQSLTSGMELKDNILVSGNAD---------STVK 342 (445)
T ss_dssp ECSSEEEEEETT-----------SCEEEEETTTCCEEEEEC----CCCSCEEEEEEETTEEEEEETT---------SCEE
T ss_pred ECCCEEEEEeCC-----------CeEEEEECCCCCEEEEEc----CCcccEEEEEEeCCEEEEEeCC---------CeEE
Confidence 355566666542 357888988765432211 1111222334455566666643 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec-CC
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK-IG 291 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~-~g 291 (685)
+||+.+..-...-..+ .........+.+++.+++.|+.++. +.+||+.+.+....-. ..
T Consensus 343 vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~s~~~dg~----------------v~iwd~~~~~~~~~~~~~~ 402 (445)
T 2ovr_B 343 IWDIKTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGT----------------VKLWDLKTGEFIRNLVTLE 402 (445)
T ss_dssp EEETTTCCEEEEECST----TSCSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEEECT
T ss_pred EEECCCCcEEEEEccC----CCCCCCEEEEEECCCEEEEEeCCCe----------------EEEEECCCCceeeeeeccc
Confidence 8998776533222110 0111222233346677888877655 7788888776544321 10
Q ss_pred CCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 292 MPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 292 ~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
..+..-.-.++++. ++.++++|+..+. .-..|++||...
T Consensus 403 ~~~~~~~v~~~~~s~~~~~la~~~~dg~----------~~~~l~v~df~~ 442 (445)
T 2ovr_B 403 SGGSGGVVWRIRASNTKLVCAVGSRNGT----------EETKLLVLDFDV 442 (445)
T ss_dssp TGGGTCEEEEEEECSSEEEEEEECSSSS----------SCCEEEEEECCC
T ss_pred cCCCCceEEEEEecCCEEEEEEcccCCC----------CccEEEEEECCC
Confidence 00111112233333 4556666765442 124588888764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=95.70 E-value=2.5 Score=44.99 Aligned_cols=133 Identities=8% Similarity=0.072 Sum_probs=70.3
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
..+.+||+.+..-...-. ...... .+++.. ++..++.|+.+ ..|.+||+.+.+-...-..
T Consensus 290 ~~i~vwd~~~~~~~~~~~--~~~~~v-~~~~~~~~~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~------- 350 (464)
T 3v7d_B 290 NTLIVWDVAQMKCLYILS--GHTDRI-YSTIYDHERKRCISASMD---------TTIRIWDLENGELMYTLQG------- 350 (464)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSSCE-EEEEEETTTTEEEEEETT---------SCEEEEETTTTEEEEEECC-------
T ss_pred CeEEEEECCCCcEEEEec--CCCCCE-EEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcEEEEEeC-------
Confidence 358889988765433221 111111 122222 45566666643 4588999887653322111
Q ss_pred CccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecc
Q 005655 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (685)
Q Consensus 235 ~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG 314 (685)
.......+.+.+..++.|+.++. +.+||+.+..-...... .......+...++.+++.|+
T Consensus 351 h~~~v~~~~~~~~~l~s~s~dg~----------------v~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 351 HTALVGLLRLSDKFLVSAAADGS----------------IRGWDANDYSRKFSYHH----TNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp CSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEEC----TTCCCEEEEEECSSEEEEEE
T ss_pred CCCcEEEEEEcCCEEEEEeCCCc----------------EEEEECCCCceeeeecC----CCCccEEEEEeCCCEEEEec
Confidence 11122333345677777877654 77888876542222211 12223333444777777776
Q ss_pred eecccCCccccccccCCcEEEEECCCCc
Q 005655 315 VVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
. +.|.+||+.+..
T Consensus 411 -d--------------g~i~iwd~~~g~ 423 (464)
T 3v7d_B 411 -E--------------NQFNIYNLRSGK 423 (464)
T ss_dssp -T--------------TEEEEEETTTCC
T ss_pred -C--------------CeEEEEECCCCc
Confidence 2 348999988764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.69 E-value=1.2 Score=46.69 Aligned_cols=181 Identities=8% Similarity=-0.021 Sum_probs=96.9
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
+.+++||+.++....+.... ....-.+++.. ++.++++|+.. ..+.+||+.+......-. ..
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~----~~ 175 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD--ESTYVASVKWSHDGSFLSVGLGN-----------GLVDIYDVESQTKLRTMA----GH 175 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC--TTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEEEC----CC
T ss_pred CeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCCCCEEEEECCC-----------CeEEEEECcCCeEEEEec----CC
Confidence 46899999998876554321 11222233333 45666777643 357889988776443221 12
Q ss_pred CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCC
Q 005655 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (685)
Q Consensus 180 Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~ 258 (685)
.....++.+++.+++.|+.. ..|.+||+.+..-...... .....-.++... ++.+++.|+.++.
T Consensus 176 ~~~v~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~- 240 (401)
T 4aez_A 176 QARVGCLSWNRHVLSSGSRS---------GAIHHHDVRIANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNV- 240 (401)
T ss_dssp SSCEEEEEEETTEEEEEETT---------SEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred CCceEEEEECCCEEEEEcCC---------CCEEEEecccCcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCe-
Confidence 22233445567777777753 4688888874332222111 111111222233 6678888887655
Q ss_pred CcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE--CCeEEEecceecccCCccccccccCCcEEEE
Q 005655 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGF 336 (685)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~y 336 (685)
+.+||+.+..-..... .....-.++++. +..+++.||-.. -..|.+|
T Consensus 241 ---------------v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~------------d~~i~i~ 289 (401)
T 4aez_A 241 ---------------VQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTM------------DKQIHFW 289 (401)
T ss_dssp ---------------EEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTT------------TCEEEEE
T ss_pred ---------------EEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCC------------CCEEEEE
Confidence 7788887654332211 111122344444 456777764211 2459999
Q ss_pred ECCCCcEE
Q 005655 337 QLDNHRWY 344 (685)
Q Consensus 337 d~~t~~W~ 344 (685)
|+.+..-.
T Consensus 290 d~~~~~~~ 297 (401)
T 4aez_A 290 NAATGARV 297 (401)
T ss_dssp ETTTCCEE
T ss_pred ECCCCCEE
Confidence 99876544
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.35 Score=51.83 Aligned_cols=187 Identities=8% Similarity=-0.008 Sum_probs=98.8
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
..|+++|+....-+.+.... ..-.+++.. ++..+++++.... ...++++|+.++....+.. .+.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~----~~v~~~~~Spdg~~la~~s~~~~--------~~~i~~~d~~tg~~~~l~~--~~~- 223 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP----QPLMSPAWSPDGSKLAYVTFESG--------RSALVIQTLANGAVRQVAS--FPR- 223 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES----SCEEEEEECTTSSEEEEEECTTS--------SCEEEEEETTTCCEEEEEC--CSS-
T ss_pred ceEEEEcCCCCCCEEEeCCC----CcceeeEEcCCCCEEEEEEecCC--------CcEEEEEECCCCcEEEeec--CCC-
Confidence 46778887765544443211 111222222 4555555553221 2579999999998876654 221
Q ss_pred CccceEEEE--CCE-EEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEeccc
Q 005655 180 RSGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYS 255 (685)
Q Consensus 180 Rsgh~~v~~--~~~-lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~ 255 (685)
...++.+ ++. |++.+...+ ...|++||+.+.....+... +.. ..+++.. ++..+++++..
T Consensus 224 --~~~~~~~spdg~~la~~~~~~g-------~~~i~~~d~~~~~~~~l~~~-----~~~--~~~~~~spdg~~l~~~s~~ 287 (415)
T 2hqs_A 224 --HNGAPAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG-----RSN--NTEPTWFPDSQNLAFTSDQ 287 (415)
T ss_dssp --CEEEEEECTTSSEEEEEECTTS-------SCEEEEEETTTCCEEECCCC-----SSC--EEEEEECTTSSEEEEEECT
T ss_pred --cccCEEEcCCCCEEEEEEecCC-------CceEEEEECCCCCEEeCcCC-----CCc--ccceEECCCCCEEEEEECC
Confidence 2223334 444 554444322 35799999998877665433 111 1222222 44444444322
Q ss_pred CCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEE
Q 005655 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (685)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (685)
.. ...+|.+|+.+..-..+... .....++++. +++.+++++..+. ...|+
T Consensus 288 ~g-------------~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~g-----------~~~i~ 338 (415)
T 2hqs_A 288 AG-------------RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG-----------QQHIA 338 (415)
T ss_dssp TS-------------SCEEEEEETTSSCCEECCCS-----SSEEEEEEECTTSSEEEEEEECSS-----------CEEEE
T ss_pred CC-------------CcEEEEEECCCCCEEEEecC-----CCcccCeEECCCCCEEEEEECcCC-----------ceEEE
Confidence 11 13589999888765544321 2222233333 5666666654320 34699
Q ss_pred EEECCCCcEEEEE
Q 005655 335 GFQLDNHRWYPLE 347 (685)
Q Consensus 335 ~yd~~t~~W~~l~ 347 (685)
+||+.+.....+.
T Consensus 339 ~~d~~~~~~~~l~ 351 (415)
T 2hqs_A 339 KQDLATGGVQVLS 351 (415)
T ss_dssp EEETTTCCEEECC
T ss_pred EEECCCCCEEEec
Confidence 9999988775543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.44 Score=50.16 Aligned_cols=211 Identities=12% Similarity=0.110 Sum_probs=102.7
Q ss_pred EEEEeccCCC-EEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKET-ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~-~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
++...| ++ .+++.|+. + +.+.+||+.+.+....-... .....-.+++.. ++.+++.|+..
T Consensus 136 ~~~~~p--~~~~~l~s~~~--d-------g~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------ 197 (402)
T 2aq5_A 136 IVAWHP--TAQNVLLSAGC--D-------NVILVWDVGTGAAVLTLGPD-VHPDTIYSVDWSRDGALICTSCRD------ 197 (402)
T ss_dssp EEEECS--SBTTEEEEEET--T-------SCEEEEETTTTEEEEEECTT-TCCSCEEEEEECTTSSCEEEEETT------
T ss_pred EEEECc--CCCCEEEEEcC--C-------CEEEEEECCCCCccEEEecC-CCCCceEEEEECCCCCEEEEEecC------
Confidence 344555 33 46666662 2 35889999988765332100 011122233333 46666776642
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCce-EEeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~ 228 (685)
..+.+||+.+..-...-..+....+. .+++.. ++.+++.|.. .. .-..|.+||+.+..- ..+...
T Consensus 198 -----~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~g~~-~~-----~d~~i~iwd~~~~~~~~~~~~~- 264 (402)
T 2aq5_A 198 -----KRVRVIEPRKGTVVAEKDRPHEGTRP-VHAVFVSEGKILTTGFS-RM-----SERQVALWDTKHLEEPLSLQEL- 264 (402)
T ss_dssp -----SEEEEEETTTTEEEEEEECSSCSSSC-CEEEECSTTEEEEEEEC-TT-----CCEEEEEEETTBCSSCSEEEEC-
T ss_pred -----CcEEEEeCCCCceeeeeccCCCCCcc-eEEEEcCCCcEEEEecc-CC-----CCceEEEEcCccccCCceEEec-
Confidence 46889999887654332111111212 223332 5666666521 11 135788999876442 111111
Q ss_pred CCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce--eEEeecCCCCCCCcceeEEEE
Q 005655 229 GSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCV 304 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~~~~~g~~P~~R~g~s~~~ 304 (685)
+....-.+++.. +..||+.|+.++. +.+|++.+.. ...+.... ....-.++++
T Consensus 265 ----~~~~~v~~~~~s~~~~~l~~~g~~dg~----------------i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~ 321 (402)
T 2aq5_A 265 ----DTSSGVLLPFFDPDTNIVYLCGKGDSS----------------IRYFEITSEAPFLHYLSMFS---SKESQRGMGY 321 (402)
T ss_dssp ----CCCSSCEEEEEETTTTEEEEEETTCSC----------------EEEEEECSSTTCEEEEEEEC---CSSCCSEEEE
T ss_pred ----cCCCceeEEEEcCCCCEEEEEEcCCCe----------------EEEEEecCCCcceEeecccc---cCCcccceEE
Confidence 111112222333 5566677765554 6677766554 33333211 1111223444
Q ss_pred ECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCC
Q 005655 305 HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEK 352 (685)
Q Consensus 305 ~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~ 352 (685)
..+..+++.+. ..+.+|++.++...++....+.
T Consensus 322 sp~~~~~~s~~---------------~~~~~~~l~~~~~~~i~~~~pr 354 (402)
T 2aq5_A 322 MPKRGLEVNKC---------------EIARFYKLHERKCEPIAMTVPR 354 (402)
T ss_dssp CCGGGSCGGGT---------------EEEEEEEEETTEEEEEEEECCC
T ss_pred ecccccceecc---------------eeEEEEEcCCCcEEEEEEEccc
Confidence 44333333321 2477888888887777665443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=95.64 E-value=1.4 Score=45.26 Aligned_cols=135 Identities=11% Similarity=0.014 Sum_probs=70.9
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (685)
..+.+||+.+..-...-. .... ...++.+ ++.+++.|+.+ ..|.+||+.+..-...-..
T Consensus 164 ~~i~~wd~~~~~~~~~~~--~h~~--~v~~~~~~~~~~~l~sg~~d---------~~v~~wd~~~~~~~~~~~~------ 224 (340)
T 1got_B 164 TTCALWDIETGQQTTTFT--GHTG--DVMSLSLAPDTRLFVSGACD---------ASAKLWDVREGMCRQTFTG------ 224 (340)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSS--CEEEEEECTTSSEEEEEETT---------SCEEEEETTTCSEEEEECC------
T ss_pred CcEEEEECCCCcEEEEEc--CCCC--ceEEEEECCCCCEEEEEeCC---------CcEEEEECCCCeeEEEEcC------
Confidence 357888998876443211 1111 1122223 56677777753 3578889877653322111
Q ss_pred CCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeE-EEEE-CCeEE
Q 005655 234 SPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS-MCVH-KKRAL 310 (685)
Q Consensus 234 ~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s-~~~~-~~~iy 310 (685)
....-.+++.. ++.+++.|+.++. +.+||+.+..-...... +....+.. +++. +++++
T Consensus 225 h~~~v~~v~~~p~~~~l~s~s~d~~----------------v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 225 HESDINAICFFPNGNAFATGSDDAT----------------CRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLL 285 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEE
T ss_pred CcCCEEEEEEcCCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEE
Confidence 11111223333 6677888887765 77888876543322111 11112223 3333 56777
Q ss_pred EecceecccCCccccccccCCcEEEEECCCCc
Q 005655 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+.|+.. ..|.+||+.+..
T Consensus 286 ~~g~~d--------------~~i~vwd~~~~~ 303 (340)
T 1got_B 286 LAGYDD--------------FNCNVWDALKAD 303 (340)
T ss_dssp EEEETT--------------SEEEEEETTTCC
T ss_pred EEECCC--------------CeEEEEEcccCc
Confidence 777653 358899986643
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.62 E-value=2 Score=49.46 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=67.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCCC---CCc---ceeEEEEECCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP---PPR---SAHQAVSWKNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P---~~R---~~ha~v~~~~~iyvfGG~~~s~~~~~~ 152 (685)
++.||+.+. .+.|+++|..++ .|+.-...... ... ...+.++.++.||+...
T Consensus 70 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---------- 129 (689)
T 1yiq_A 70 DGVMYTTGP----------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---------- 129 (689)
T ss_dssp TTEEEEECG----------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEEcC----------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc----------
Confidence 688888654 246999999877 48854321100 000 11234556888887542
Q ss_pred cccCeEEEEECCCCc--EEEccc-CCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEe
Q 005655 153 HHYKDFWMLDLKTNQ--WEQLNL-KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEI 224 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~-~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v 224 (685)
-..++.||..|++ |+.-.. ..........+.++.++.||+-.+.... .....|+.||+.|.+ |+.-
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 --DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF----GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp --TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc----CCCCEEEEEECCCCcEEEEec
Confidence 1468899998875 876442 1111112222345678888774332111 124579999998865 8765
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.72 Score=49.49 Aligned_cols=66 Identities=11% Similarity=-0.019 Sum_probs=37.3
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (685)
+.+++.|+.. ..+.+||+.+......-..+ ......+.+.. ++.+++.||.+ ..|.+|
T Consensus 210 ~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~-h~~~v~~~~~s-d~~~l~s~~~d---------~~v~vw 267 (450)
T 2vdu_B 210 HQFIITSDRD-----------EHIKISHYPQCFIVDKWLFG-HKHFVSSICCG-KDYLLLSAGGD---------DKIFAW 267 (450)
T ss_dssp CEEEEEEETT-----------SCEEEEEESCTTCEEEECCC-CSSCEEEEEEC-STTEEEEEESS---------SEEEEE
T ss_pred CcEEEEEcCC-----------CcEEEEECCCCceeeeeecC-CCCceEEEEEC-CCCEEEEEeCC---------CeEEEE
Confidence 6677777753 35788888776543321111 11111222222 66677777742 468889
Q ss_pred EcCCCceE
Q 005655 215 DLDQFKWQ 222 (685)
Q Consensus 215 D~~t~~W~ 222 (685)
|+.+.+..
T Consensus 268 d~~~~~~~ 275 (450)
T 2vdu_B 268 DWKTGKNL 275 (450)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEe
Confidence 98877643
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.57 E-value=1.4 Score=46.97 Aligned_cols=137 Identities=10% Similarity=0.048 Sum_probs=72.4
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCc
Q 005655 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (685)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (685)
.+.+||+.+..-...- ........++.+++..++.|+.+ ..+.+||+.+..-...-.. ..
T Consensus 260 ~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~-------~~ 319 (445)
T 2ovr_B 260 MVKVWDPETETCLHTL----QGHTNRVYSLQFDGIHVVSGSLD---------TSIRVWDVETGNCIHTLTG-------HQ 319 (445)
T ss_dssp CEEEEEGGGTEEEEEE----CCCSSCEEEEEECSSEEEEEETT---------SCEEEEETTTCCEEEEECC-------CC
T ss_pred EEEEEECCCCcEeEEe----cCCCCceEEEEECCCEEEEEeCC---------CeEEEEECCCCCEEEEEcC-------Cc
Confidence 4677777665432211 11112223344477777777753 4588899887653322211 11
Q ss_pred cceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEeccee
Q 005655 237 SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVV 316 (685)
Q Consensus 237 s~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~ 316 (685)
.....+...+.+++.|+.++. +.+||+.+..-...-.. .........++.+++.+++.|+..
T Consensus 320 ~~v~~~~~~~~~l~~~~~dg~----------------i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d 381 (445)
T 2ovr_B 320 SLTSGMELKDNILVSGNADST----------------VKIWDIKTGQCLQTLQG--PNKHQSAVTCLQFNKNFVITSSDD 381 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSC----------------EEEEETTTCCEEEEECS--TTSCSSCEEEEEECSSEEEEEETT
T ss_pred ccEEEEEEeCCEEEEEeCCCe----------------EEEEECCCCcEEEEEcc--CCCCCCCEEEEEECCCEEEEEeCC
Confidence 111222334556777776655 77888866543322211 011122233444567777777753
Q ss_pred cccCCccccccccCCcEEEEECCCCcEEE
Q 005655 317 DMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 317 ~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
..|.+||+.+.....
T Consensus 382 --------------g~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 382 --------------GTVKLWDLKTGEFIR 396 (445)
T ss_dssp --------------SEEEEEETTTCCEEE
T ss_pred --------------CeEEEEECCCCceee
Confidence 359999998876543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=2 Score=49.22 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=68.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCCC---CC---cceeEEEEECCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP---PP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P---~~---R~~ha~v~~~~~iyvfGG~~~s~~~~~~ 152 (685)
++.||+... .+.|+++|..+. .|+.-...... .. ....+.++.++.||+...
T Consensus 66 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---------- 125 (668)
T 1kv9_A 66 DGVIYTSMS----------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---------- 125 (668)
T ss_dssp TTEEEEEEG----------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC----------
Confidence 788888654 246899998877 48854321100 00 011234556788887542
Q ss_pred cccCeEEEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEec
Q 005655 153 HHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (685)
-..++.||..|++ |+.-............+.++.++.||+..+.... .....|+.||+.+.+ |+.-.
T Consensus 126 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 126 --DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY----GVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp --TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEES
T ss_pred --CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCc----CCCCEEEEEECCCCcEEEEecc
Confidence 1468999998875 8864421111122223445678888874332111 124579999998765 87643
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.6 Score=46.82 Aligned_cols=211 Identities=7% Similarity=-0.090 Sum_probs=108.1
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCC
Q 005655 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 69 R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
....+.+..|. ++.||+++.. .+.|++||+.+. .+.+... . ..-++++.. ++.||+....
T Consensus 28 ~~~eg~~~d~~-g~~l~~~~~~---------~~~i~~~~~~~~-~~~~~~~---~-~~~~~l~~~~dg~l~v~~~~---- 88 (296)
T 3e5z_A 28 TWTEGPVYVPA-RSAVIFSDVR---------QNRTWAWSDDGQ-LSPEMHP---S-HHQNGHCLNKQGHLIACSHG---- 88 (296)
T ss_dssp SSEEEEEEEGG-GTEEEEEEGG---------GTEEEEEETTSC-EEEEESS---C-SSEEEEEECTTCCEEEEETT----
T ss_pred ccccCCeEeCC-CCEEEEEeCC---------CCEEEEEECCCC-eEEEECC---C-CCcceeeECCCCcEEEEecC----
Confidence 34566777763 2458887752 246899999988 6666432 1 122334443 5778876531
Q ss_pred CCccccccCeEEEEECCCCcEEEcccC--CCCCCCccceEEEECCEEEEE----ccccCC----CCceeeeceEEEEEcC
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLK--GCPSPRSGHRMVLYKHKIIVF----GGFYDT----LREVRYYNDLYVFDLD 217 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~--g~P~~Rsgh~~v~~~~~lyv~----GG~~~~----~~~~~~~~dv~~yD~~ 217 (685)
...+++||+.++....+... +.+..+....++.-++.||+. |..... .........||+|++.
T Consensus 89 -------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 89 -------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp -------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred -------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence 24689999988888766431 111112222222236788886 432100 0000013479999987
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC-Ccee-EEeec-CCCC
Q 005655 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEW-SKVKK-IGMP 293 (685)
Q Consensus 218 t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W-~~~~~-~g~~ 293 (685)
.+...+... .. .-.+++.. ++.+++.+.... .+++|++. +.+. ..... ....
T Consensus 162 -g~~~~~~~~----~~---~~~gi~~s~dg~~lv~~~~~~----------------~i~~~~~~~~g~~~~~~~~~~~~~ 217 (296)
T 3e5z_A 162 -GTLSAPIRD----RV---KPNGLAFLPSGNLLVSDTGDN----------------ATHRYCLNARGETEYQGVHFTVEP 217 (296)
T ss_dssp -SCEEEEECC----CS---SEEEEEECTTSCEEEEETTTT----------------EEEEEEECSSSCEEEEEEEECCSS
T ss_pred -CCEEEeecC----CC---CCccEEECCCCCEEEEeCCCC----------------eEEEEEECCCCcCcCCCeEeeCCC
Confidence 555444322 01 11233333 455554443322 37788875 4444 21111 1100
Q ss_pred CCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 294 PGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 294 P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
..| .++++- +++|||..+ +.|++||+.......+..
T Consensus 218 ~~p---~~i~~d~~G~l~v~~~----------------~~v~~~~~~g~~~~~~~~ 254 (296)
T 3e5z_A 218 GKT---DGLRVDAGGLIWASAG----------------DGVHVLTPDGDELGRVLT 254 (296)
T ss_dssp SCC---CSEEEBTTSCEEEEET----------------TEEEEECTTSCEEEEEEC
T ss_pred CCC---CeEEECCCCCEEEEcC----------------CeEEEECCCCCEEEEEEC
Confidence 111 124443 677877651 348999998665555543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.31 Score=50.05 Aligned_cols=61 Identities=11% Similarity=-0.026 Sum_probs=35.1
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEccc
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
.+|.+|+.++++..+.... ....-..+++. +++||+.+.... -..+++|++.++.++.+..
T Consensus 19 ~v~~~d~~tg~~~~~~~~~--~~~~p~~~a~spdg~l~~~~~~~~---------~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLA--ATQNPTYLALSAKDCLYSVDKEDD---------EGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp EEEEEETTTTEEEEEEEEE--ECSCCCCEEECTTCEEEEEEEETT---------EEEEEEEEEETTEEEEEEE
T ss_pred EEEEEcCCCCeEEEeeeee--ccCCcceEEEccCCeEEEEEecCC---------CceEEEEEecCCcEEEeee
Confidence 4778888888887643211 01111223333 567777654211 2568999998888776654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.66 Score=48.31 Aligned_cols=190 Identities=9% Similarity=0.014 Sum_probs=92.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~ 150 (685)
++.+.| ++.+++.|+. + ..+.+||+.+++-...-... ...-.++++. +..+++.|+.+
T Consensus 132 ~v~~sp--dg~~l~sgs~--d-------~~i~iwd~~~~~~~~~~~~h---~~~V~~~~~~~~~~~~l~s~s~D------ 191 (344)
T 4gqb_B 132 TVSVLS--SGTQAVSGSK--D-------ICIKVWDLAQQVVLSSYRAH---AAQVTCVAASPHKDSVFLSCSED------ 191 (344)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC---SSCEEEEEECSSCTTEEEEEETT------
T ss_pred EEEECC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEcCc---CCceEEEEecCCCCCceeeeccc------
Confidence 344444 4566666662 2 35788898877543221111 1111122222 23577777753
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCceEE-ecc
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKP 226 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~ 226 (685)
+.+.+||+.+..-...-. .........++.+ ++.+++.|+.+ ..|.+||+.+.+-.. +..
T Consensus 192 -----~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~l~sg~~d---------g~v~~wd~~~~~~~~~~~~ 255 (344)
T 4gqb_B 192 -----NRILLWDTRCPKPASQIG--CSAPGYLPTSLAWHPQQSEVFVFGDEN---------GTVSLVDTKSTSCVLSSAV 255 (344)
T ss_dssp -----SCEEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETT---------SEEEEEESCC--CCEEEEC
T ss_pred -----cccccccccccceeeeee--cceeeccceeeeecCCCCcceEEeccC---------CcEEEEECCCCcEEEEEcC
Confidence 347788998776433211 1111111222333 45677777753 357888987654211 111
Q ss_pred CCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE
Q 005655 227 RFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (685)
Q Consensus 227 ~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~ 304 (685)
. ..+ -.+++.. +..+++.|+.++. +.+||..+.+-..+. + ....-.++++
T Consensus 256 h-----~~~--v~~v~fsp~g~~~lasgs~D~~----------------i~vwd~~~~~~~~~~--~---H~~~V~~v~~ 307 (344)
T 4gqb_B 256 H-----SQC--VTGLVFSPHSVPFLASLSEDCS----------------LAVLDSSLSELFRSQ--A---HRDFVRDATW 307 (344)
T ss_dssp C-----SSC--EEEEEECSSSSCCEEEEETTSC----------------EEEECTTCCEEEEEC--C---CSSCEEEEEE
T ss_pred C-----CCC--EEEEEEccCCCeEEEEEeCCCe----------------EEEEECCCCcEEEEc--C---CCCCEEEEEE
Confidence 1 111 1222222 3456777777655 778888776543321 1 1111233444
Q ss_pred E--CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 305 H--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 305 ~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
. +..+++-||.. ..|.+|++.+
T Consensus 308 sp~~~~llas~s~D--------------~~v~~w~v~~ 331 (344)
T 4gqb_B 308 SPLNHSLLTTVGWD--------------HQVVHHVVPT 331 (344)
T ss_dssp CSSSTTEEEEEETT--------------SCEEEEECCC
T ss_pred eCCCCeEEEEEcCC--------------CeEEEEECCC
Confidence 3 34566667653 2377777655
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.26 Score=51.51 Aligned_cols=193 Identities=9% Similarity=0.042 Sum_probs=96.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~ 150 (685)
++.+.| ++.+++.|+. + ..+.+||+.+.+-...-... ...-.++++. +..+++.||...
T Consensus 144 ~v~~sp--dg~~l~sgs~--d-------g~v~iwd~~~~~~~~~~~~h---~~~v~~v~~s~~~~~~~~s~~~dg----- 204 (357)
T 4g56_B 144 TLSVFS--DGTQAVSGGK--D-------FSVKVWDLSQKAVLKSYNAH---SSEVNCVAACPGKDTIFLSCGEDG----- 204 (357)
T ss_dssp EEEECS--SSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC---SSCEEEEEECTTCSSCEEEEETTS-----
T ss_pred EEEECC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEcCC---CCCEEEEEEccCCCceeeeeccCC-----
Confidence 344555 5667777762 2 35788999887654322211 1111222222 234677777532
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
.+.+||+.+..-..... .........++.+ ++.+++.|+.+ ..|.+||+.+..-...-..
T Consensus 205 ------~v~~wd~~~~~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d---------~~i~~wd~~~~~~~~~~~~ 267 (357)
T 4g56_B 205 ------RILLWDTRKPKPATRID--FCASDTIPTSVTWHPEKDDTFACGDET---------GNVSLVNIKNPDSAQTSAV 267 (357)
T ss_dssp ------CEEECCTTSSSCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESS---------SCEEEEESSCGGGCEEECC
T ss_pred ------ceEEEECCCCceeeeee--eccccccccchhhhhcccceEEEeecc---------cceeEEECCCCcEeEEEec
Confidence 47778887665332211 1111122233333 35677777643 4578889876542221111
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE--
Q 005655 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-- 305 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-- 305 (685)
. ..+....++...+..+++.|+.++. +.+||+.+.+..... + ....-.++++.
T Consensus 268 --~--~~~v~~l~~sp~~~~~lasgs~D~~----------------i~iwd~~~~~~~~~~--~---H~~~V~~vafsP~ 322 (357)
T 4g56_B 268 --H--SQNITGLAYSYHSSPFLASISEDCT----------------VAVLDADFSEVFRDL--S---HRDFVTGVAWSPL 322 (357)
T ss_dssp --C--SSCEEEEEECSSSSCCEEEEETTSC----------------EEEECTTSCEEEEEC--C---CSSCEEEEEECSS
T ss_pred --c--ceeEEEEEEcCCCCCEEEEEeCCCE----------------EEEEECCCCcEeEEC--C---CCCCEEEEEEeCC
Confidence 0 1111111111124467777777655 778888776544332 1 11112234443
Q ss_pred CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
++.+++.||.. ..|.+|++.+
T Consensus 323 d~~~l~s~s~D--------------g~v~iW~~~~ 343 (357)
T 4g56_B 323 DHSKFTTVGWD--------------HKVLHHHLPS 343 (357)
T ss_dssp STTEEEEEETT--------------SCEEEEECC-
T ss_pred CCCEEEEEcCC--------------CeEEEEECCC
Confidence 56777777764 2488888654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.46 E-value=1.1 Score=45.73 Aligned_cols=162 Identities=9% Similarity=-0.015 Sum_probs=80.8
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.+.+|+..+..-...-.. ....-.+++.. ++.+++.|+.. ..+.+||+.++.-...-. .. .
T Consensus 145 ~v~i~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~lasg~~d-----------g~i~iwd~~~~~~~~~~~--~h--~ 206 (321)
T 3ow8_A 145 KVNIFGVESGKKEYSLDT---RGKFILSIAYSPDGKYLASGAID-----------GIINIFDIATGKLLHTLE--GH--A 206 (321)
T ss_dssp EEEEEETTTCSEEEEEEC---SSSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CC--S
T ss_pred cEEEEEcCCCceeEEecC---CCceEEEEEECCCCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc--cc--C
Confidence 577788877654321111 11112222332 46677777653 348889998875432211 11 1
Q ss_pred ccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 181 sgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
..-..+.+ ++.+++.|+.+ ..|.+||+.+......-.. ....-.+++.. ++.+++.|+.++.
T Consensus 207 ~~v~~l~~spd~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~------h~~~v~~~~~sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 207 MPIRSLTFSPDSQLLVTASDD---------GYIKIYDVQHANLAGTLSG------HASWVLNVAFCPDDTHFVSSSSDKS 271 (321)
T ss_dssp SCCCEEEECTTSCEEEEECTT---------SCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CceeEEEEcCCCCEEEEEcCC---------CeEEEEECCCcceeEEEcC------CCCceEEEEECCCCCEEEEEeCCCc
Confidence 11122333 56677777753 3588889877654332111 11111222333 5667788887665
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEeccee
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVV 316 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~ 316 (685)
+.++|+.+.+-...-. .....-.++++. ++..++.||..
T Consensus 272 ----------------v~iwd~~~~~~~~~~~----~h~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 272 ----------------VKVWDVGTRTCVHTFF----DHQDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp ----------------EEEEETTTTEEEEEEC----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred ----------------EEEEeCCCCEEEEEEc----CCCCcEEEEEECCCCCEEEEEeCC
Confidence 7788887654333211 111112233333 56666777653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.66 Score=47.51 Aligned_cols=214 Identities=14% Similarity=0.144 Sum_probs=100.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~ 150 (685)
.+++.| +++||+.+.. + --+.+++|++.+.+++.+....... ..-+.+++. + ..||+.+..
T Consensus 44 ~~a~sp--dg~l~~~~~~---~----~~~~v~~~~~~~g~~~~~~~~~~~~-~~p~~~a~spdg~~l~~~~~~------- 106 (347)
T 3hfq_A 44 YLALSA--KDCLYSVDKE---D----DEGGIAAWQIDGQTAHKLNTVVAPG-TPPAYVAVDEARQLVYSANYH------- 106 (347)
T ss_dssp CEEECT--TCEEEEEEEE---T----TEEEEEEEEEETTEEEEEEEEEEES-CCCSEEEEETTTTEEEEEETT-------
T ss_pred eEEEcc--CCeEEEEEec---C----CCceEEEEEecCCcEEEeeeeecCC-CCCEEEEECCCCCEEEEEeCC-------
Confidence 356666 5667666531 1 1246899999888877665311111 111233333 3 457766531
Q ss_pred cccccCeEEEEECC-CCcEEEccc---CC-CCCCCc----cceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcC-CC
Q 005655 151 RFHHYKDFWMLDLK-TNQWEQLNL---KG-CPSPRS----GHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF 219 (685)
Q Consensus 151 ~~~~~~dv~~yD~~-t~~W~~~~~---~g-~P~~Rs----gh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~ 219 (685)
-+.+.+|++. +.....+.. .+ .|.+|. -|.+++. ++.||+.+.. .+.+++|++. +.
T Consensus 107 ----~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~---------~~~v~~~~~~~~g 173 (347)
T 3hfq_A 107 ----KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG---------SDKVYVYNVSDAG 173 (347)
T ss_dssp ----TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT---------TTEEEEEEECTTS
T ss_pred ----CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC---------CCEEEEEEECCCC
Confidence 1456777774 334433322 11 122221 2223322 5566665432 2468889887 55
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe-CC-EEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCC-
Q 005655 220 KWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP- 296 (685)
Q Consensus 220 ~W~~v~~~~~~~~P~~Rs~~s~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~- 296 (685)
....+..........|+ .++.. ++ .||+.+..... -.+|.++..+..+..+......|..
T Consensus 174 ~~~~~~~~~~~~g~~p~---~~~~spdg~~l~v~~~~~~~--------------v~v~~~~~~~g~~~~~~~~~~~~~~~ 236 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPR---HLVFSPDGQYAFLAGELSSQ--------------IASLKYDTQTGAFTQLGIVKTIPADY 236 (347)
T ss_dssp CEEEEEEEECCTTCCEE---EEEECTTSSEEEEEETTTTE--------------EEEEEEETTTTEEEEEEEEESSCTTC
T ss_pred cEEEeeeEEcCCCCCCc---eEEECCCCCEEEEEeCCCCE--------------EEEEEecCCCCceEEeeeeeecCCCC
Confidence 55544321100001121 23333 44 47776544322 1255556556777655432222221
Q ss_pred --ccee-EEEEE-CCe-EEEecceecccCCccccccccCCcEEEEECCCC-cEEEEE
Q 005655 297 --RAGF-SMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-RWYPLE 347 (685)
Q Consensus 297 --R~g~-s~~~~-~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-~W~~l~ 347 (685)
..+. ++++. +++ ||+.+.. .+.|.+|++... .+..+.
T Consensus 237 ~~~~~~~~i~~spdG~~l~v~~~~--------------~~~v~v~~~~~~g~~~~~~ 279 (347)
T 3hfq_A 237 TAHNGAAAIRLSHDGHFLYVSNRG--------------YNTLAVFAVTADGHLTLIQ 279 (347)
T ss_dssp CSCCEEEEEEECTTSCEEEEEEET--------------TTEEEEEEECGGGCEEEEE
T ss_pred CCCCcceeEEECCCCCEEEEEeCC--------------CCEEEEEEECCCCcEEEeE
Confidence 1222 33333 454 6665432 245888887632 444443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.7 Score=49.09 Aligned_cols=141 Identities=7% Similarity=-0.028 Sum_probs=70.7
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++.+.| ++.+++.|+. + ..+.+||..+......-... ...-.+++.. ++.+++.||.+.
T Consensus 113 ~~~~~p--~~~~l~s~s~--D-------g~i~vwd~~~~~~~~~l~~h---~~~V~~v~~~~~~~~l~sgs~D~------ 172 (410)
T 1vyh_C 113 RVIFHP--VFSVMVSASE--D-------ATIKVWDYETGDFERTLKGH---TDSVQDISFDHSGKLLASCSADM------ 172 (410)
T ss_dssp EEEECS--SSSEEEEEES--S-------SCEEEEETTTCCCCEEECCC---SSCEEEEEECTTSSEEEEEETTS------
T ss_pred EEEEcC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEecc---CCcEEEEEEcCCCCEEEEEeCCC------
Confidence 344555 4667777773 2 36888998877543221111 1111222222 466777787643
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
.+.+||+.+..-.. . +......-.++.+ ++.+++.||.+ ..|.+||+.+......-..
T Consensus 173 -----~i~iwd~~~~~~~~--~--~~~h~~~V~~v~~~p~~~~l~s~s~D---------~~i~~wd~~~~~~~~~~~~-- 232 (410)
T 1vyh_C 173 -----TIKLWDFQGFECIR--T--MHGHDHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYCVKTFTG-- 232 (410)
T ss_dssp -----CCCEEETTSSCEEE--C--CCCCSSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCEEEEEEC--
T ss_pred -----eEEEEeCCCCceeE--E--EcCCCCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEeC--
Confidence 35567776654322 1 1111111222333 45666777753 4688899887654322111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
. ...-..+... ++.+++.|+.++.
T Consensus 233 ---h-~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 233 ---H-REWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp ---C-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred ---C-CccEEEEEECCCCCEEEEEcCCCe
Confidence 0 1111122222 6677778877655
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.33 Score=49.89 Aligned_cols=199 Identities=12% Similarity=0.066 Sum_probs=91.3
Q ss_pred EEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCC--CcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 74 ~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
+...| ++.+++.|+. + ..+.+||+.. ..+..+.... ........+.+ ++.+++.||...
T Consensus 113 v~~sp--~g~~las~s~--D-------~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D~---- 175 (330)
T 2hes_X 113 VAWSN--DGYYLATCSR--D-------KSVWIWETDESGEEYECISVLQ--EHSQDVKHVIWHPSEALLASSSYDD---- 175 (330)
T ss_dssp EEECT--TSCEEEEEET--T-------SCEEEEECCTTCCCCEEEEEEC--CCSSCEEEEEECSSSSEEEEEETTS----
T ss_pred EEECC--CCCEEEEEeC--C-------CEEEEEeccCCCCCeEEEEEec--cCCCceEEEEECCCCCEEEEEcCCC----
Confidence 44444 4556666652 2 3577888743 2343322111 01111222233 456777777533
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--C--CEEEEEccccCCCCceeeeceEEEEEcCC------C
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQ------F 219 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t------~ 219 (685)
.+.+||..+..|..+.......... ..+.+ + +.+++.||.+. .|.+||+.+ .
T Consensus 176 -------~i~iW~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~l~s~s~D~---------~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 176 -------TVRIWKDYDDDWECVAVLNGHEGTV--WSSDFDKTEGVFRLCSGSDDS---------TVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp -------CEEEEEEETTEEEEEEEECCCSSCE--EEEEECCSSSSCEEEEEETTS---------CEEEEEEEEECTTSCE
T ss_pred -------eEEEEECCCCCeeEEEEccCCCCcE--EEEEecCCCCeeEEEEEeCCC---------eEEEEEecCCCccccc
Confidence 3667777777776554411111111 12222 2 34555666432 344454432 2
Q ss_pred ceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcce
Q 005655 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (685)
Q Consensus 220 ~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g 299 (685)
.|..+...+. .....-.+++...+.+++.||.++. +.+|+..+..|..+...........-
T Consensus 238 ~~~~~~~~~~---~h~~~v~~v~~s~~~~l~s~~~dg~----------------v~iw~~~~~~~~~~~~~~~~h~~~~v 298 (330)
T 2hes_X 238 EWVCEAILPD---VHKRQVYNVAWGFNGLIASVGADGV----------------LAVYEEVDGEWKVFAKRALCHGVYEI 298 (330)
T ss_dssp EEEEEEECCS---CCSSCEEEEEECTTSCEEEEETTSC----------------EEEEEEETTEEEEEEEESCTTTTSCE
T ss_pred eeEEeeeccc---ccccceEEEEEcCCCEEEEEeCCCE----------------EEEEEcCCCceEEEeccccccccceE
Confidence 4554443311 1112222333335557777877655 66777777778665432110111011
Q ss_pred eEEEEE---CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 300 FSMCVH---KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 300 ~s~~~~---~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
.+++.. ++.+++.||..+ .|.+||+.+
T Consensus 299 ~~v~~~~~~~~~~las~s~Dg--------------~v~~W~~~~ 328 (330)
T 2hes_X 299 NVVKWLELNGKTILATGGDDG--------------IVNFWSLEK 328 (330)
T ss_dssp EEEEEC-----CCEEEEETTS--------------EEEEEEC--
T ss_pred EEEEEecCCCceEEEEecCCC--------------cEEEEEecc
Confidence 222332 366777777542 377777653
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=95.35 E-value=1.5 Score=45.91 Aligned_cols=104 Identities=12% Similarity=-0.053 Sum_probs=55.6
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCE-EEEEecccCCCCcccCCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSE 266 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~ 266 (685)
++.+++.|+.. ..|.+||+.+..-...... .....-.+++.. ++. +++.|+..+.
T Consensus 258 ~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~g~~dg~--------- 314 (420)
T 3vl1_A 258 YGKYVIAGHVS---------GVITVHNVFSKEQTIQLPS-----KFTCSCNSLTVDGNNANYIYAGYENGM--------- 314 (420)
T ss_dssp TTEEEEEEETT---------SCEEEEETTTCCEEEEECC-----TTSSCEEEEEECSSCTTEEEEEETTSE---------
T ss_pred CCCEEEEEcCC---------CeEEEEECCCCceeEEccc-----ccCCCceeEEEeCCCCCEEEEEeCCCe---------
Confidence 45666776643 3588999887653332221 111112223333 344 7777776654
Q ss_pred CCceeeeEEEEeCCCce--eEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 267 KGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 267 ~~~~~~dv~~yd~~t~~--W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
+.+||+.+.. -..+... ....-.+++...+.+++.||.. ..|.+|++.+
T Consensus 315 -------i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~~d--------------~~v~iw~~~~ 365 (420)
T 3vl1_A 315 -------LAQWDLRSPECPVGEFLIN----EGTPINNVYFAAGALFVSSGFD--------------TSIKLDIISD 365 (420)
T ss_dssp -------EEEEETTCTTSCSEEEEES----TTSCEEEEEEETTEEEEEETTT--------------EEEEEEEECC
T ss_pred -------EEEEEcCCCcCchhhhhcc----CCCCceEEEeCCCCEEEEecCC--------------ccEEEEeccC
Confidence 7788876642 2222210 1112233444578888888753 2478888665
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.48 Score=47.96 Aligned_cols=132 Identities=5% Similarity=-0.052 Sum_probs=70.8
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
.+.+|+.++. -+.|.+||+.+++........ .....+++. + ..||+.+.. -+.+
T Consensus 9 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~-----------~~~i 64 (331)
T 3u4y_A 9 SNFGIVVEQH---------LRRISFFSTDTLEILNQITLG----YDFVDTAITSDCSNVVVTSDF-----------CQTL 64 (331)
T ss_dssp CCEEEEEEGG---------GTEEEEEETTTCCEEEEEECC----CCEEEEEECSSSCEEEEEEST-----------TCEE
T ss_pred CCEEEEEecC---------CCeEEEEeCcccceeeeEEcc----CCcceEEEcCCCCEEEEEeCC-----------CCeE
Confidence 5778887762 247899999999886543321 111233332 3 457777652 2479
Q ss_pred EEEECCCCcE--EEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 159 WMLDLKTNQW--EQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 159 ~~yD~~t~~W--~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
++||+.++.. ..+.. ...+ .+++++. +++|| .+...+ -...|++||+.+.+....-..
T Consensus 65 ~~~d~~~~~~~~~~~~~--~~~~--~~~~~~s~dg~~l~-~~~~~~------~~~~i~v~d~~~~~~~~~~~~------- 126 (331)
T 3u4y_A 65 VQIETQLEPPKVVAIQE--GQSS--MADVDITPDDQFAV-TVTGLN------HPFNMQSYSFLKNKFISTIPI------- 126 (331)
T ss_dssp EEEECSSSSCEEEEEEE--CSSC--CCCEEECTTSSEEE-ECCCSS------SSCEEEEEETTTTEEEEEEEC-------
T ss_pred EEEECCCCceeEEeccc--CCCC--ccceEECCCCCEEE-EecCCC------CcccEEEEECCCCCeEEEEEC-------
Confidence 9999998874 22222 1222 2213333 34566 332110 012799999988876544322
Q ss_pred CccceeEEEe-CC-EEEEEecc
Q 005655 235 PRSGFQFFVY-QD-EVFLYGGY 254 (685)
Q Consensus 235 ~Rs~~s~~~~-~~-~Iyv~GG~ 254 (685)
...-+.++.. ++ .||+.+..
T Consensus 127 ~~~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 127 PYDAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp CTTEEEEEECTTSSCEEEEEET
T ss_pred CCCccceEECCCCCEEEEEecC
Confidence 1112444444 33 57776543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=95.29 E-value=1.8 Score=46.06 Aligned_cols=172 Identities=11% Similarity=0.080 Sum_probs=89.0
Q ss_pred CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEE
Q 005655 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
+.+++.|+. + +.+.+||+.+.+-...-.. ....-.+++.. ++..++.|+.. ..+.+
T Consensus 280 ~~~l~~~~~--d-------~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~d-----------g~i~v 336 (464)
T 3v7d_B 280 GNIVVSGSY--D-------NTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISASMD-----------TTIRI 336 (464)
T ss_dssp TTEEEEEET--T-------SCEEEEETTTTEEEEEECC---CSSCEEEEEEETTTTEEEEEETT-----------SCEEE
T ss_pred CCEEEEEeC--C-------CeEEEEECCCCcEEEEecC---CCCCEEEEEEcCCCCEEEEEeCC-----------CcEEE
Confidence 456666662 2 3688999987765432221 11122233333 45566666643 35888
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s 240 (685)
||+.+..-...- ......-.++.+.+..++.|+.+ ..|.+||+.+..-...... .......
T Consensus 337 wd~~~~~~~~~~----~~h~~~v~~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~------~~~~~~~ 397 (464)
T 3v7d_B 337 WDLENGELMYTL----QGHTALVGLLRLSDKFLVSAAAD---------GSIRGWDANDYSRKFSYHH------TNLSAIT 397 (464)
T ss_dssp EETTTTEEEEEE----CCCSSCEEEEEECSSEEEEEETT---------SEEEEEETTTCCEEEEEEC------TTCCCEE
T ss_pred EECCCCcEEEEE----eCCCCcEEEEEEcCCEEEEEeCC---------CcEEEEECCCCceeeeecC------CCCccEE
Confidence 999877533221 11222234455667777777753 3688899887653322211 1112222
Q ss_pred EEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecce
Q 005655 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (685)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (685)
+...++.+++.|+ .+. +.+||+.+..-...... +....-.+++..++.+++.|+.
T Consensus 398 ~~~~~~~~l~~~~-dg~----------------i~iwd~~~g~~~~~~~~---~~~~~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 398 TFYVSDNILVSGS-ENQ----------------FNIYNLRSGKLVHANIL---KDADQIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp EEEECSSEEEEEE-TTE----------------EEEEETTTCCEEESCTT---TTCSEEEEEEEETTEEEEEEEE
T ss_pred EEEeCCCEEEEec-CCe----------------EEEEECCCCcEEehhhc---cCCCcEEEEEecCCEEEEEEEe
Confidence 3333666667666 333 78899888765442111 1222223444445555555554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.85 Score=50.92 Aligned_cols=141 Identities=15% Similarity=0.121 Sum_probs=71.7
Q ss_pred CeEEEEECCCCcEEE-cccCCC--------CCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 156 KDFWMLDLKTNQWEQ-LNLKGC--------PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~-~~~~g~--------P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
+.+.+||..+.+-.. +...++ |.+|..+..+.. +..+|+-... .+.|+++|..+..-..+.
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~---------~g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE---------TGKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT---------TTEEEEEECTTSSSCEEE
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC---------CCeEEEEEecCCCcceeE
Confidence 467888988876433 222111 222332222222 3455544321 367899998765432222
Q ss_pred cCCCCCCCCCccceeEEEe-CC-EEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEE
Q 005655 226 PRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (685)
Q Consensus 226 ~~~~~~~P~~Rs~~s~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~ 303 (685)
.. +..+.-+.++.. ++ .+|+.+..+. .+.++|+.+.+-...-..+..|.+..+...
T Consensus 319 ~i-----~~~~~~~~~~~spdg~~l~va~~~~~----------------~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 319 SI-----GAAPFLHDGGWDSSHRYFMTAANNSN----------------KVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp EE-----ECCSSCCCEEECTTSCEEEEEEGGGT----------------EEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred Ee-----ccCcCccCceECCCCCEEEEEecCCC----------------eEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 22 122223334443 33 4555443332 377799988876655444444554444443
Q ss_pred EE--CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 304 VH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 304 ~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
+. .+.+|+.+...+ +.|-+||+.+
T Consensus 377 ~~p~~g~~~~s~~~~d-------------~~V~v~d~~~ 402 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGD-------------GSISLIGTDP 402 (543)
T ss_dssp EETTTEEEEEEEBSSS-------------SEEEEEECCT
T ss_pred CCCCCccEEEeccCCC-------------ceEEEEEeCC
Confidence 34 367777664321 4588888876
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=95.27 E-value=1.5 Score=45.13 Aligned_cols=62 Identities=5% Similarity=0.037 Sum_probs=30.8
Q ss_pred EEEEeCCCceeEEeecCCCCCCCccee-EEEEE-CCe-EEEecceecccCCccccccccCCcEEEEEC--CCCcEEEEEe
Q 005655 274 LWSLDPRTWEWSKVKKIGMPPGPRAGF-SMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQL--DNHRWYPLEL 348 (685)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~P~~R~g~-s~~~~-~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~--~t~~W~~l~~ 348 (685)
+.+|++.+..+..+......|....+. .+++. +++ ||+.+ ... .+.|.+|++ .+..+..+..
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~-~~~------------~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN-RLK------------ADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE-CSS------------SCEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC-CCC------------CCEEEEEEEcCCCCcEEEeeE
Confidence 667777677776554432223222222 33333 454 54433 210 134666666 4667766554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.43 Score=55.15 Aligned_cols=195 Identities=10% Similarity=-0.016 Sum_probs=96.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.++++||. + +.+.+||..++.....-... ...-.+++.. ++..+++|+..
T Consensus 59 ~~~~~s~--~~~~l~~~~~--d-------g~i~vw~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d------ 118 (814)
T 3mkq_A 59 RAGKFIA--RKNWIIVGSD--D-------FRIRVFNYNTGEKVVDFEAH---PDYIRSIAVHPTKPYVLSGSDD------ 118 (814)
T ss_dssp EEEEEEG--GGTEEEEEET--T-------SEEEEEETTTCCEEEEEECC---SSCEEEEEECSSSSEEEEEETT------
T ss_pred EEEEEeC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEecC---CCCEEEEEEeCCCCEEEEEcCC------
Confidence 3455555 5667777763 2 36889999888765332211 1112222332 35555666542
Q ss_pred cccccCeEEEEECCCC-cEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 151 RFHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~-~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
..+.+||+.++ .....-. .. ...-.+++.. ++.+++.|+.+ ..|.+||+.+..-......
T Consensus 119 -----g~i~vw~~~~~~~~~~~~~--~~-~~~v~~~~~~p~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~ 181 (814)
T 3mkq_A 119 -----LTVKLWNWENNWALEQTFE--GH-EHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT 181 (814)
T ss_dssp -----SEEEEEEGGGTSEEEEEEE--CC-SSCEEEEEEETTEEEEEEEEETT---------SEEEEEETTCSSCSEEEEC
T ss_pred -----CEEEEEECCCCceEEEEEc--CC-CCcEEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcceeEEec
Confidence 35778888765 3322211 11 1111222222 35677777753 4688888865443222211
Q ss_pred CCCCCCCCccceeEEEe---CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE
Q 005655 228 FGSMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~ 304 (685)
.....-..++.. ++.+++.|+..+. +.+||+.+..-...-.. ....-.++++
T Consensus 182 -----~~~~~v~~~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~----~~~~v~~~~~ 236 (814)
T 3mkq_A 182 -----GQERGVNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLEG----HMSNVSFAVF 236 (814)
T ss_dssp -----CCTTCCCEEEECCSTTCCEEEEECTTSE----------------EEEEETTTTEEEEEEEC----CSSCEEEEEE
T ss_pred -----CCCCCEEEEEEEECCCCCEEEEEeCCCE----------------EEEEECCCCcEEEEEcC----CCCCEEEEEE
Confidence 111111222222 5667777776544 77888776653332211 1111223333
Q ss_pred E-CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 305 H-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 305 ~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
. ++.+++.|+.. ..|.+||+.+.+
T Consensus 237 ~~~~~~l~~~~~d--------------g~v~vwd~~~~~ 261 (814)
T 3mkq_A 237 HPTLPIIISGSED--------------GTLKIWNSSTYK 261 (814)
T ss_dssp CSSSSEEEEEETT--------------SCEEEEETTTCS
T ss_pred cCCCCEEEEEeCC--------------CeEEEEECCCCc
Confidence 3 55667777653 237777776644
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=1.5 Score=44.81 Aligned_cols=173 Identities=9% Similarity=0.040 Sum_probs=90.0
Q ss_pred cEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.+.+||+.+.+-. .+.... . ...+++.. ++.+++.|+.. ..+.+||+.+..-...-. ...
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~--~--~~~~~~~spdg~~l~~g~~d-----------g~v~i~~~~~~~~~~~~~---~~~ 164 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGP--V--DAWTLAFSPDSQYLATGTHV-----------GKVNIFGVESGKKEYSLD---TRG 164 (321)
T ss_dssp EEEEEETTTTEEEEEEECCT--T--CCCCEEECTTSSEEEEECTT-----------SEEEEEETTTCSEEEEEE---CSS
T ss_pred cEEEEECCCCCEEEEEeCCC--c--cEEEEEECCCCCEEEEEcCC-----------CcEEEEEcCCCceeEEec---CCC
Confidence 5778888877543 222211 1 11223333 45667777642 457788887765432211 111
Q ss_pred CccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccC
Q 005655 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (685)
Q Consensus 180 Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~ 256 (685)
.. ...+.+ ++.+++.|+.+ ..|.+||+.+.+-...-.. . ..+ -.+++.. ++.+++.|+..+
T Consensus 165 ~~-v~~~~~spdg~~lasg~~d---------g~i~iwd~~~~~~~~~~~~--h--~~~--v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 165 KF-ILSIAYSPDGKYLASGAID---------GIINIFDIATGKLLHTLEG--H--AMP--IRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp SC-EEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC--C--SSC--CCEEEECTTSCEEEEECTTS
T ss_pred ce-EEEEEECCCCCEEEEEcCC---------CeEEEEECCCCcEEEEEcc--c--CCc--eeEEEEcCCCCEEEEEcCCC
Confidence 11 122233 56677777753 3588899987653322111 0 111 1123333 667888888766
Q ss_pred CCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEE
Q 005655 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (685)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~ 335 (685)
. +.+||+.+......-. + ....-.++++. ++..++.|+.. ..|.+
T Consensus 229 ~----------------i~iwd~~~~~~~~~~~-~---h~~~v~~~~~sp~~~~l~s~s~D--------------~~v~i 274 (321)
T 3ow8_A 229 Y----------------IKIYDVQHANLAGTLS-G---HASWVLNVAFCPDDTHFVSSSSD--------------KSVKV 274 (321)
T ss_dssp C----------------EEEEETTTCCEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT--------------SCEEE
T ss_pred e----------------EEEEECCCcceeEEEc-C---CCCceEEEEECCCCCEEEEEeCC--------------CcEEE
Confidence 5 7788887655433221 0 11112233333 56677777653 34899
Q ss_pred EECCCCc
Q 005655 336 FQLDNHR 342 (685)
Q Consensus 336 yd~~t~~ 342 (685)
||+.+..
T Consensus 275 wd~~~~~ 281 (321)
T 3ow8_A 275 WDVGTRT 281 (321)
T ss_dssp EETTTTE
T ss_pred EeCCCCE
Confidence 9987653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.44 Score=55.08 Aligned_cols=151 Identities=8% Similarity=-0.010 Sum_probs=79.2
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.++++|+. + +.+.+||..++.....-... ...-.+++.. ++..+++||..
T Consensus 17 ~~i~~sp--~~~~la~~~~--~-------g~v~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d------ 76 (814)
T 3mkq_A 17 KGIDFHP--TEPWVLTTLY--S-------GRVEIWNYETQVEVRSIQVT---ETPVRAGKFIARKNWIIVGSDD------ 76 (814)
T ss_dssp EEEEECS--SSSEEEEEET--T-------SEEEEEETTTTEEEEEEECC---SSCEEEEEEEGGGTEEEEEETT------
T ss_pred EEEEECC--CCCEEEEEeC--C-------CEEEEEECCCCceEEEEecC---CCcEEEEEEeCCCCEEEEEeCC------
Confidence 3455666 5677777762 2 36889998887654322211 1112223333 45666777642
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC-ceEEeccC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIKPR 227 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~~~ 227 (685)
..+.+||+.++.....-. .. ...-..+.+ ++..++.|+.+ ..+.+||+.+. .....-..
T Consensus 77 -----g~i~vw~~~~~~~~~~~~--~~--~~~v~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 77 -----FRIRVFNYNTGEKVVDFE--AH--PDYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp -----SEEEEEETTTCCEEEEEE--CC--SSCEEEEEECSSSSEEEEEETT---------SEEEEEEGGGTSEEEEEEEC
T ss_pred -----CeEEEEECCCCcEEEEEe--cC--CCCEEEEEEeCCCCEEEEEcCC---------CEEEEEECCCCceEEEEEcC
Confidence 458899998887644322 11 111222333 45556666642 36788888765 22222111
Q ss_pred CCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc
Q 005655 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (685)
....-.+++.. ++.+++.|+.++. +.+||+.+.
T Consensus 139 ------~~~~v~~~~~~p~~~~~l~~~~~dg~----------------v~vwd~~~~ 173 (814)
T 3mkq_A 139 ------HEHFVMCVAFNPKDPSTFASGCLDRT----------------VKVWSLGQS 173 (814)
T ss_dssp ------CSSCEEEEEEETTEEEEEEEEETTSE----------------EEEEETTCS
T ss_pred ------CCCcEEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCC
Confidence 11111222333 4567777776654 777887544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.77 Score=46.26 Aligned_cols=119 Identities=8% Similarity=0.048 Sum_probs=56.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcC--CCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~--~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~ 147 (685)
.++++.|. +..||+.+.. . +.+.+|++. ++++..+.....+. .-+.++.. + ..||+.+..
T Consensus 41 ~~~~~spd-g~~l~~~~~~---~------~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~---- 104 (343)
T 1ri6_A 41 QPMVVSPD-KRYLYVGVRP---E------FRVLAYRIAPDDGALTFAAESALPG--SLTHISTDHQGQFVFVGSYN---- 104 (343)
T ss_dssp CCEEECTT-SSEEEEEETT---T------TEEEEEEECTTTCCEEEEEEEECSS--CCSEEEECTTSSEEEEEETT----
T ss_pred ceEEECCC-CCEEEEeecC---C------CeEEEEEecCCCCceeeccccccCC--CCcEEEEcCCCCEEEEEecC----
Confidence 34566662 3445554431 1 356777776 77777554322111 22333333 3 456665532
Q ss_pred CCccccccCeEEEEECCCCc-EEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCC-CceEE
Q 005655 148 NQERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQE 223 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~ 223 (685)
-+.+.+||+.+.. ...+.. .+....-+.+++. +++||+.+.. ...+.+||+.+ .+...
T Consensus 105 -------~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 105 -------AGNVSVTRLEDGLPVGVVDV--VEGLDGCHSANISPDNRTLWVPALK---------QDRICLFTVSDDGHLVA 166 (343)
T ss_dssp -------TTEEEEEEEETTEEEEEEEE--ECCCTTBCCCEECTTSSEEEEEEGG---------GTEEEEEEECTTSCEEE
T ss_pred -------CCeEEEEECCCCcccccccc--ccCCCCceEEEECCCCCEEEEecCC---------CCEEEEEEecCCCceee
Confidence 1347777773222 222222 1111122333333 3467665422 24688999887 66654
Q ss_pred e
Q 005655 224 I 224 (685)
Q Consensus 224 v 224 (685)
+
T Consensus 167 ~ 167 (343)
T 1ri6_A 167 Q 167 (343)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.86 Score=51.46 Aligned_cols=206 Identities=8% Similarity=-0.099 Sum_probs=102.6
Q ss_pred ccEEEEEcC--C-CcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCC------CcEE
Q 005655 101 GDLYRYDVE--K-QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT------NQWE 169 (685)
Q Consensus 101 ndv~~yd~~--~-~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t------~~W~ 169 (685)
..||.+++. . .....++.............+++ +++.++++........ .......+|++|+.+ ....
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG-PSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS-TTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC-CCCceeEEEEEECCCCccccCCcee
Confidence 468999987 4 66666654211001112222222 4554445443211000 011246899999998 6766
Q ss_pred Ecc-cCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcC-CC---ceEEeccCCCCCCCCCccceeEE
Q 005655 170 QLN-LKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF---KWQEIKPRFGSMWPSPRSGFQFF 242 (685)
Q Consensus 170 ~~~-~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~---~W~~v~~~~~~~~P~~Rs~~s~~ 242 (685)
.+. . .+ . ....+.+ +++.+++......... -....||++|+. +. ....+... . ...-.+.+
T Consensus 181 ~l~~~--~~--~-~~~~~~~SpDG~~la~~~~~~~~~~-~~~~~i~~~d~~~~g~~~~~~~l~~~-----~-~~~~~~~~ 248 (662)
T 3azo_A 181 ELSDD--AH--R-FVTGPRLSPDGRQAVWLAWDHPRMP-WEGTELKTARVTEDGRFADTRTLLGG-----P-EEAIAQAE 248 (662)
T ss_dssp ESSCS--CS--S-EECCCEECTTSSEEEEEEECTTCCT-TTCEEEEEEEECTTSCEEEEEEEEEE-----T-TBCEEEEE
T ss_pred EEEec--CC--C-cccCceECCCCCEEEEEECCCCCCC-CCCcEEEEEEECCCCcccccEEeCCC-----C-CceEcceE
Confidence 665 3 11 1 1112223 5555555443321100 012579999998 56 44444321 0 11122333
Q ss_pred Ee-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCC---CCCCcc-eeEEEEE-CCeEEEeccee
Q 005655 243 VY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM---PPGPRA-GFSMCVH-KKRALLFGGVV 316 (685)
Q Consensus 243 ~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~---~P~~R~-g~s~~~~-~~~iyvfGG~~ 316 (685)
.. ++.||+.+...+. ..+|.+|+.+..|..+..... .|.-.. ..++++. ++++|+.+..
T Consensus 249 ~spdg~l~~~~~~~~~--------------~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~- 313 (662)
T 3azo_A 249 WAPDGSLIVATDRTGW--------------WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK- 313 (662)
T ss_dssp ECTTSCEEEEECTTSS--------------CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-
T ss_pred ECCCCeEEEEECCCCC--------------eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-
Confidence 33 5667776654321 259999998888887754211 111111 1234444 6777766544
Q ss_pred cccCCccccccccCCcEEEEECCCCcEEEE
Q 005655 317 DMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (685)
Q Consensus 317 ~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (685)
+ ...||.+|+.+.....+
T Consensus 314 ~------------~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 314 G------------AAVLGILDPESGELVDA 331 (662)
T ss_dssp S------------SCEEEEEETTTTEEEEC
T ss_pred C------------ccEEEEEECCCCcEEEe
Confidence 3 35688888877665443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=95.12 E-value=1.3 Score=43.30 Aligned_cols=180 Identities=8% Similarity=0.022 Sum_probs=92.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
+++++.+ ++.|||... + +.+++||+.......+.... ...-+++++. ++.|||....
T Consensus 70 ~~i~~~~--~g~l~v~~~---~-------~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~------- 127 (270)
T 1rwi_B 70 QGLAVDG--AGTVYVTDF---N-------NRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG------- 127 (270)
T ss_dssp CCEEECT--TCCEEEEET---T-------TEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG-------
T ss_pred ceeEECC--CCCEEEEcC---C-------CEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC-------
Confidence 3455554 456776543 1 35888998877655443221 1222344444 5678887542
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
.+.+++|+..+.........+. ..-+++++. ++.||+.... .+.|.+||+.+..-......
T Consensus 128 ----~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~~-- 189 (270)
T 1rwi_B 128 ----NNRVVKLAAGSKTQTVLPFTGL---NDPDGVAVDNSGNVYVTDTD---------NNRVVKLEAESNNQVVLPFT-- 189 (270)
T ss_dssp ----GTEEEEECTTCCSCEECCCCSC---CSCCCEEECTTCCEEEEEGG---------GTEEEEECTTTCCEEECCCS--
T ss_pred ----CCEEEEEECCCceeEeeccccC---CCceeEEEeCCCCEEEEECC---------CCEEEEEecCCCceEeeccc--
Confidence 2458888776665544322111 112234443 5678886542 24688999887654332221
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CC
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~ 307 (685)
.. ..-.+++.. ++.||+....... +++|++.+..-...... ....-.++++. ++
T Consensus 190 ---~~-~~p~~i~~d~~g~l~v~~~~~~~----------------v~~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 190 ---DI-TAPWGIAVDEAGTVYVTEHNTNQ----------------VVKLLAGSTTSTVLPFT----GLNTPLAVAVDSDR 245 (270)
T ss_dssp ---SC-CSEEEEEECTTCCEEEEETTTSC----------------EEEECTTCSCCEECCCC----SCSCEEEEEECTTC
T ss_pred ---CC-CCceEEEECCCCCEEEEECCCCc----------------EEEEcCCCCcceeeccC----CCCCceeEEECCCC
Confidence 11 122234444 5578877644332 78888876543332111 11222344443 56
Q ss_pred eEEEecce
Q 005655 308 RALLFGGV 315 (685)
Q Consensus 308 ~iyvfGG~ 315 (685)
+||+....
T Consensus 246 ~l~v~~~~ 253 (270)
T 1rwi_B 246 TVYVADRG 253 (270)
T ss_dssp CEEEEEGG
T ss_pred CEEEEECC
Confidence 78777543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=95.10 E-value=1.1 Score=47.60 Aligned_cols=170 Identities=13% Similarity=0.129 Sum_probs=88.6
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEc-ccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~-~~~g~P~~R 180 (685)
.+.+||+.+.+....-.. ......++.+.+.+++.|+.. ..+.+||+.+..-... .. .....
T Consensus 194 ~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~l~s~s~d-----------g~i~vwd~~~~~~~~~~~~--~~~~~ 256 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLIH----HCEAVLHLRFNNGMMVTCSKD-----------RSIAVWDMASPTDITLRRV--LVGHR 256 (435)
T ss_dssp CEEEEESSSCCEEEEECC----CCSCEEEEECCTTEEEEEETT-----------SCEEEEECSSSSCCEEEEE--ECCCS
T ss_pred eEEEEECCCCcEEEEEcC----CCCcEEEEEEcCCEEEEeeCC-----------CcEEEEeCCCCCCceeeeE--ecCCC
Confidence 578888887765432221 111223333455566677643 3577888876542211 11 11112
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCc
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~ 260 (685)
....++.+++.+++.|+.+ ..+.+||+.+..-...-.. .......+..++.+++.|+.++.
T Consensus 257 ~~v~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~l~~g~~dg~--- 317 (435)
T 1p22_A 257 AAVNVVDFDDKYIVSASGD---------RTIKVWNTSTCEFVRTLNG-------HKRGIACLQYRDRLVVSGSSDNT--- 317 (435)
T ss_dssp SCEEEEEEETTEEEEEETT---------SEEEEEETTTCCEEEEEEC-------CSSCEEEEEEETTEEEEEETTSC---
T ss_pred CcEEEEEeCCCEEEEEeCC---------CeEEEEECCcCcEEEEEcC-------CCCcEEEEEeCCCEEEEEeCCCe---
Confidence 2223344466666666642 4688899887653322111 11112233335667788887665
Q ss_pred ccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECC
Q 005655 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
+.+||+.+..-...-. .......++.+++..++.|+.. ..|.+||+.
T Consensus 318 -------------i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~l~sg~~d--------------g~i~vwd~~ 364 (435)
T 1p22_A 318 -------------IRLWDIECGACLRVLE-----GHEELVRCIRFDNKRIVSGAYD--------------GKIKVWDLV 364 (435)
T ss_dssp -------------EEEEETTTCCEEEEEC-----CCSSCEEEEECCSSEEEEEETT--------------SCEEEEEHH
T ss_pred -------------EEEEECCCCCEEEEEe-----CCcCcEEEEEecCCEEEEEeCC--------------CcEEEEECC
Confidence 7788887654332211 1111223334477778887753 348888864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=95.09 E-value=2 Score=44.80 Aligned_cols=105 Identities=8% Similarity=0.052 Sum_probs=55.5
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~ 159 (685)
++.++++|+. + +.+.+||+.+..-...-.. ....-.+++.. ++.+++.|+.. ..+.
T Consensus 108 ~~~~l~~~~~--d-------g~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d-----------~~i~ 164 (420)
T 3vl1_A 108 QMRRFILGTT--E-------GDIKVLDSNFNLQREIDQA---HVSEITKLKFFPSGEALISSSQD-----------MQLK 164 (420)
T ss_dssp SSCEEEEEET--T-------SCEEEECTTSCEEEEETTS---SSSCEEEEEECTTSSEEEEEETT-----------SEEE
T ss_pred CCCEEEEEEC--C-------CCEEEEeCCCcceeeeccc---ccCccEEEEECCCCCEEEEEeCC-----------CeEE
Confidence 4667777762 2 3688889887765544221 12222333333 45566666642 3588
Q ss_pred EEECCCCcEEE-cccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 160 MLDLKTNQWEQ-LNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 160 ~yD~~t~~W~~-~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
+||+.+..-.. +.. . ...-.+++.. ++.+++.|+.+ ..|.+||+.+.+-
T Consensus 165 iwd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 165 IWSVKDGSNPRTLIG---H-RATVTDIAIIDRGRNVLSASLD---------GTIRLWECGTGTT 215 (420)
T ss_dssp EEETTTCCCCEEEEC---C-SSCEEEEEEETTTTEEEEEETT---------SCEEEEETTTTEE
T ss_pred EEeCCCCcCceEEcC---C-CCcEEEEEEcCCCCEEEEEcCC---------CcEEEeECCCCce
Confidence 89987654211 111 1 1111122222 45666667653 3578888877653
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.42 Score=50.31 Aligned_cols=204 Identities=10% Similarity=-0.004 Sum_probs=97.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE--------EecCCCCCCCcceeEEEEEC-C-EEEEEcC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK--------VISSPNSPPPRSAHQAVSWK-N-YLYIFGG 142 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~--------~l~s~~~P~~R~~ha~v~~~-~-~iyvfGG 142 (685)
++...|. ++.+++.|+. + ..+.+||+.++.+. .+.. ....-.+++... + .+++.|+
T Consensus 86 ~~~~~p~-~~~~l~s~s~--d-------g~v~vw~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 86 DIAWCPH-NDNVIASGSE--D-------CTVMVWEIPDGGLVLPLREPVITLEG----HTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp EEEECTT-CTTEEEEEET--T-------SEEEEEECCTTCCSSCBCSCSEEEEC----CSSCEEEEEECSSBTTEEEEEE
T ss_pred EEEeCCC-CCCEEEEEeC--C-------CeEEEEEccCCCCccccCCceEEecC----CCCeEEEEEECcCCCCEEEEEc
Confidence 3444442 3556666662 2 35788888876431 1111 111112233332 2 4777776
Q ss_pred ccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
.. ..+.+||+.+......-. .........++.+ ++.+++.|+.+ ..|.+||+.+..
T Consensus 152 ~d-----------g~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~ 209 (402)
T 2aq5_A 152 CD-----------NVILVWDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRD---------KRVRVIEPRKGT 209 (402)
T ss_dssp TT-----------SCEEEEETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETT---------SEEEEEETTTTE
T ss_pred CC-----------CEEEEEECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecC---------CcEEEEeCCCCc
Confidence 43 358899998886543321 0011111223333 56667777642 468999998866
Q ss_pred eEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCcee--EEeecCCCCCCCc
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW--SKVKKIGMPPGPR 297 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W--~~~~~~g~~P~~R 297 (685)
-...-... ........++.. ++.+++.|.... ....+.+||+.+..- ..... +...
T Consensus 210 ~~~~~~~~----~~~~~~~~~~~~~~~~~l~~g~~~~-------------~d~~i~iwd~~~~~~~~~~~~~----~~~~ 268 (402)
T 2aq5_A 210 VVAEKDRP----HEGTRPVHAVFVSEGKILTTGFSRM-------------SERQVALWDTKHLEEPLSLQEL----DTSS 268 (402)
T ss_dssp EEEEEECS----SCSSSCCEEEECSTTEEEEEEECTT-------------CCEEEEEEETTBCSSCSEEEEC----CCCS
T ss_pred eeeeeccC----CCCCcceEEEEcCCCcEEEEeccCC-------------CCceEEEEcCccccCCceEEec----cCCC
Confidence 44332110 111111223333 677776662111 113477888765331 11111 1111
Q ss_pred ceeEEEEE-C-CeEEEecceecccCCccccccccCCcEEEEECCCCc--EEEEE
Q 005655 298 AGFSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WYPLE 347 (685)
Q Consensus 298 ~g~s~~~~-~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~--W~~l~ 347 (685)
.-.++++. + ..+++.|+.. +.|.+||+.+.. ...+.
T Consensus 269 ~v~~~~~s~~~~~l~~~g~~d--------------g~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 269 GVLLPFFDPDTNIVYLCGKGD--------------SSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp SCEEEEEETTTTEEEEEETTC--------------SCEEEEEECSSTTCEEEEE
T ss_pred ceeEEEEcCCCCEEEEEEcCC--------------CeEEEEEecCCCcceEeec
Confidence 12334444 3 4455566432 348899988765 44444
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=94.96 E-value=2.6 Score=43.18 Aligned_cols=195 Identities=12% Similarity=0.044 Sum_probs=95.9
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++...| ++.+++.||. + ..+.+||..+..-...-... ...-.+++.. ++.+++.||..
T Consensus 60 ~~~~s~--d~~~l~s~s~--D-------g~v~iWd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~d------- 118 (340)
T 1got_B 60 AMHWGT--DSRLLLSASQ--D-------GKLIIWDSYTTNKVHAIPLR---SSWVMTCAYAPSGNYVACGGLD------- 118 (340)
T ss_dssp EEEECT--TSSEEEEEET--T-------TEEEEEETTTCCEEEEEECS---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEeC--C-------CcEEEEECCCCCcceEeecC---CccEEEEEECCCCCEEEEEeCC-------
Confidence 344444 5677777773 2 35788898776543221111 1111222222 46677777753
Q ss_pred ccccCeEEEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 152 FHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
+.+.+||+.+.. ....................-++. ++.|+.+ ..|.+||+.+..-...-..
T Consensus 119 ----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d---------~~i~~wd~~~~~~~~~~~~-- 182 (340)
T 1got_B 119 ----NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD---------TTCALWDIETGQQTTTFTG-- 182 (340)
T ss_dssp ----CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT---------SCEEEEETTTTEEEEEECC--
T ss_pred ----CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC---------CcEEEEECCCCcEEEEEcC--
Confidence 357788877642 111111000111111111122455 4445532 4588899887654332111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CC
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~ 307 (685)
....-.+++.. ++.+++.|+..+. +.+||+.+..-...-. .....-.++++. ++
T Consensus 183 ----h~~~v~~~~~~~~~~~l~sg~~d~~----------------v~~wd~~~~~~~~~~~----~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 183 ----HTGDVMSLSLAPDTRLFVSGACDAS----------------AKLWDVREGMCRQTFT----GHESDINAICFFPNG 238 (340)
T ss_dssp ----CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCSEEEEEC----CCSSCEEEEEECTTS
T ss_pred ----CCCceEEEEECCCCCEEEEEeCCCc----------------EEEEECCCCeeEEEEc----CCcCCEEEEEEcCCC
Confidence 11111223333 6678888887765 7778877654322211 011112233443 56
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
.+++.|+.. ..|.+||+.+..
T Consensus 239 ~~l~s~s~d--------------~~v~iwd~~~~~ 259 (340)
T 1got_B 239 NAFATGSDD--------------ATCRLFDLRADQ 259 (340)
T ss_dssp SEEEEEETT--------------SCEEEEETTTTE
T ss_pred CEEEEEcCC--------------CcEEEEECCCCc
Confidence 777777653 348899987754
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=1.8 Score=49.06 Aligned_cols=126 Identities=10% Similarity=0.071 Sum_probs=68.7
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEc-CCC--cEEEecCCCC---CCCcc---eeEEEE--ECCE----E
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPPRS---AHQAVS--WKNY----L 137 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~-~~~--~W~~l~s~~~---P~~R~---~ha~v~--~~~~----i 137 (685)
+-++. ++.||+.+.. .+.|++||. .+. .|+.-..... |.+++ ..+.++ .++. |
T Consensus 57 tP~v~---~g~vyv~~~~---------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV 124 (599)
T 1w6s_A 57 APLVV---DGKMYIHTSF---------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALI 124 (599)
T ss_dssp CCEEE---TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEE
T ss_pred ccEEE---CCEEEEEeCC---------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEE
Confidence 34455 7888887651 246999999 776 5886433210 00111 123344 4566 7
Q ss_pred EEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEE
Q 005655 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFD 215 (685)
Q Consensus 138 yvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD 215 (685)
|+... -..++.||..|++ |+.-.....+......+-++.++.||+-.+... ......|+.||
T Consensus 125 ~v~t~------------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e----~g~~g~v~A~D 188 (599)
T 1w6s_A 125 LKTQL------------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAE----LGVRGYLTAYD 188 (599)
T ss_dssp EEECT------------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGG----GTCCCEEEEEE
T ss_pred EEEcC------------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccc----cCCCCeEEEEE
Confidence 77532 1468899998875 875322100001112233556888876433111 01235789999
Q ss_pred cCCCc--eEEecc
Q 005655 216 LDQFK--WQEIKP 226 (685)
Q Consensus 216 ~~t~~--W~~v~~ 226 (685)
..+.+ |+.-..
T Consensus 189 ~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 189 VKTGEQVWRAYAT 201 (599)
T ss_dssp TTTCCEEEEEESS
T ss_pred CCCCcEEEEEcCC
Confidence 98754 876543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=94.90 E-value=1.2 Score=44.71 Aligned_cols=186 Identities=11% Similarity=0.053 Sum_probs=93.5
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc--EEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCe
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
.+.+++.|.. -+.++++|+.+++ |+.-... ....|.+++. ++.||+.+. +.
T Consensus 4 ~~~~lv~~~~---------~~~v~~~d~~tG~~~w~~~~~~----~~~~~~~~~~pdG~ilvs~~-------------~~ 57 (276)
T 3no2_A 4 PQHLLVGGSG---------WNKIAIINKDTKEIVWEYPLEK----GWECNSVAATKAGEILFSYS-------------KG 57 (276)
T ss_dssp CCEEEEECTT---------CSEEEEEETTTTEEEEEEECCT----TCCCCEEEECTTSCEEEECB-------------SE
T ss_pred CCcEEEeeCC---------CCEEEEEECCCCeEEEEeCCCc----cCCCcCeEECCCCCEEEeCC-------------CC
Confidence 3678887762 2478899997774 7643221 1123444444 677877321 45
Q ss_pred EEEEECCCC--cEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCC-ceEEeccCCCCCCC
Q 005655 158 FWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIKPRFGSMWP 233 (685)
Q Consensus 158 v~~yD~~t~--~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~~~~~~~~P 233 (685)
++.||+ ++ .|+.-. +.....+++... ++.+++..+-. ...++.||+... .|+.. .......+
T Consensus 58 V~~~d~-~G~~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~~--------~~~v~~vd~~Gk~l~~~~-~~~~~~~~ 123 (276)
T 3no2_A 58 AKMITR-DGRELWNIAA----PAGCEMQTARILPDGNALVAWCGH--------PSTILEVNMKGEVLSKTE-FETGIERP 123 (276)
T ss_dssp EEEECT-TSCEEEEEEC----CTTCEEEEEEECTTSCEEEEEEST--------TEEEEEECTTSCEEEEEE-ECCSCSSG
T ss_pred EEEECC-CCCEEEEEcC----CCCccccccEECCCCCEEEEecCC--------CCEEEEEeCCCCEEEEEe-ccCCCCcc
Confidence 888998 44 366432 111222333333 55555543310 135778887543 24432 11100001
Q ss_pred CCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC-ceeEEeecCCCCCCCcceeEEEEE-CCeEEE
Q 005655 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (685)
Q Consensus 234 ~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv 311 (685)
...........++.+++.....+ .+.+||+.. ..|+.-.. ..| ++++.. ++.+||
T Consensus 124 ~~~~~~v~~~~~G~~lv~~~~~~----------------~v~~~d~~G~~~w~~~~~--~~~-----~~~~~~~~g~~~v 180 (276)
T 3no2_A 124 HAQFRQINKNKKGNYLVPLFATS----------------EVREIAPNGQLLNSVKLS--GTP-----FSSAFLDNGDCLV 180 (276)
T ss_dssp GGSCSCCEECTTSCEEEEETTTT----------------EEEEECTTSCEEEEEECS--SCC-----CEEEECTTSCEEE
T ss_pred cccccCceECCCCCEEEEecCCC----------------EEEEECCCCCEEEEEECC--CCc-----cceeEcCCCCEEE
Confidence 11111112223556665543332 278888863 35665432 111 234444 678887
Q ss_pred ecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
++... +.|+.||+.+.+.
T Consensus 181 ~~~~~--------------~~v~~~d~~tG~~ 198 (276)
T 3no2_A 181 ACGDA--------------HCFVQLNLESNRI 198 (276)
T ss_dssp ECBTT--------------SEEEEECTTTCCE
T ss_pred EeCCC--------------CeEEEEeCcCCcE
Confidence 76532 3499999996643
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=3.7 Score=45.66 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=56.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCe
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
++.+|+.+.. -+.|.++|+.+++.. .+.... .-|.+++. +..||+.+.- +.
T Consensus 148 ~~~~~vs~~~---------d~~V~v~D~~t~~~~~~i~~g~-----~~~~v~~spdg~~l~v~~~d------------~~ 201 (543)
T 1nir_A 148 PNLFSVTLRD---------AGQIALVDGDSKKIVKVIDTGY-----AVHISRMSASGRYLLVIGRD------------AR 201 (543)
T ss_dssp GGEEEEEEGG---------GTEEEEEETTTCCEEEEEECST-----TEEEEEECTTSCEEEEEETT------------SE
T ss_pred CCEEEEEEcC---------CCeEEEEECCCceEEEEEecCc-----ccceEEECCCCCEEEEECCC------------Ce
Confidence 5788887762 246888999988654 333221 14555444 3567766531 56
Q ss_pred EEEEEC--CCCcEEEcccCCCCCCCccceEEEE-----CCEEEEEccccCCCCceeeeceEEEEEcCCCceE
Q 005655 158 FWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLY-----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 158 v~~yD~--~t~~W~~~~~~g~P~~Rsgh~~v~~-----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (685)
+.+||+ .+.+-.. . .+....-+.+++. +++.++++++. .+.|.+||..+.+-.
T Consensus 202 V~v~D~~~~t~~~~~--~--i~~g~~p~~va~sp~~~~dg~~l~v~~~~--------~~~v~v~D~~t~~~~ 261 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA--E--IKIGIEARSVESSKFKGYEDRYTIAGAYW--------PPQFAIMDGETLEPK 261 (543)
T ss_dssp EEEEETTSSSCEEEE--E--EECCSEEEEEEECCSTTCTTTEEEEEEEE--------SSEEEEEETTTCCEE
T ss_pred EEEEECcCCCCcEEE--E--EecCCCcceEEeCCCcCCCCCEEEEEEcc--------CCeEEEEeccccccc
Confidence 899999 6654322 1 1222222223332 34444444432 356888898876543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=94.87 E-value=2.7 Score=44.04 Aligned_cols=148 Identities=10% Similarity=0.043 Sum_probs=74.8
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
++.+++.|+.. ..+.+||+.+..-...-. ... ..-.+++.. ++..++.|+.+ ..+.
T Consensus 134 dg~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~--~h~-~~v~~~~~~p~~~~l~s~s~d---------~~v~ 190 (393)
T 1erj_A 134 DGKFLATGAED-----------RLIRIWDIENRKIVMILQ--GHE-QDIYSLDYFPSGDKLVSGSGD---------RTVR 190 (393)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS-SCEEEEEECTTSSEEEEEETT---------SEEE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc--cCC-CCEEEEEEcCCCCEEEEecCC---------CcEE
Confidence 46677777753 358889998876543221 111 111122222 45555666643 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecC
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~ 290 (685)
+||+.+......-.. ... -.+++.. ++.+++.|+..+. +.+||+.+..-...-..
T Consensus 191 iwd~~~~~~~~~~~~-----~~~--v~~~~~~~~~~~~l~~~s~d~~----------------v~iwd~~~~~~~~~~~~ 247 (393)
T 1erj_A 191 IWDLRTGQCSLTLSI-----EDG--VTTVAVSPGDGKYIAAGSLDRA----------------VRVWDSETGFLVERLDS 247 (393)
T ss_dssp EEETTTTEEEEEEEC-----SSC--EEEEEECSTTCCEEEEEETTSC----------------EEEEETTTCCEEEEEC-
T ss_pred EEECCCCeeEEEEEc-----CCC--cEEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCcEEEeecc
Confidence 889988765433222 111 1222222 6778888887765 77788776543332211
Q ss_pred CCC---CCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 291 GMP---PGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 291 g~~---P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
... .....-.++++. +++.++.|+.. ..|.+||+.+.
T Consensus 248 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d--------------~~v~~wd~~~~ 288 (393)
T 1erj_A 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLD--------------RSVKLWNLQNA 288 (393)
T ss_dssp -----CCCSSCEEEEEECTTSSEEEEEETT--------------SEEEEEEC---
T ss_pred cccCCCCCCCCEEEEEECCCCCEEEEEeCC--------------CEEEEEECCCC
Confidence 000 001111233333 56677777653 34888887653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=94.84 E-value=4 Score=41.67 Aligned_cols=121 Identities=8% Similarity=-0.031 Sum_probs=66.0
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEE-ECCEEEEEcCccCCCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~-~~~~iyvfGG~~~s~~~ 149 (685)
+-+.+..|. ++.||+++.. .+.|++||+.++....+..+ ..-++++. -++.+||...
T Consensus 51 ~egp~~~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~~-----~~v~~i~~~~dg~l~v~~~------- 108 (326)
T 2ghs_A 51 GEGPTFDPA-SGTAWWFNIL---------ERELHELHLASGRKTVHALP-----FMGSALAKISDSKQLIASD------- 108 (326)
T ss_dssp EEEEEEETT-TTEEEEEEGG---------GTEEEEEETTTTEEEEEECS-----SCEEEEEEEETTEEEEEET-------
T ss_pred CcCCeEeCC-CCEEEEEECC---------CCEEEEEECCCCcEEEEECC-----CcceEEEEeCCCeEEEEEC-------
Confidence 445566653 3677777642 24689999998877655432 11233333 3678877541
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
+.+++||+.++.+..+.......+......+.+ ++.||+. ...... ......||+|+ +.+...+
T Consensus 109 ------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~-~~~~~~--~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 109 ------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIG-TMGRKA--ETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp ------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEE-EEETTC--CTTCEEEEEEE--TTEEEEE
T ss_pred ------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEE-eCCCcC--CCCceEEEEEe--CCcEEEe
Confidence 348999999999887654211111111222223 5677763 321100 01235789998 4555544
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=1.4 Score=48.22 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=41.8
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
++.+|+|-| +.+|+||..++....-.-.++|. --++..+.+++|+|-| +..|+
T Consensus 158 ~~~~yfFkG-------------~~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG-----------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-------------NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQG-----------NQFLR 210 (460)
T ss_dssp SSEEEEEET-------------TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEET-----------TEEEE
T ss_pred CCeEEEEec-------------ccEEEEecccceeecccCCCCCc---cchheeeCCceEEEEC-----------CEEEE
Confidence 678899988 46899999988765433333342 3466667899999988 35678
Q ss_pred EEcCCC
Q 005655 214 FDLDQF 219 (685)
Q Consensus 214 yD~~t~ 219 (685)
||..+.
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 887543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.5 Score=49.25 Aligned_cols=149 Identities=12% Similarity=-0.014 Sum_probs=74.5
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeece
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYND 210 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~d 210 (685)
++.+++.|+.. ..+.+||+.++.-...-. ... ..-.++.+ ++.+++.||.+ ..
T Consensus 150 dg~~l~sgs~d-----------g~v~iwd~~~~~~~~~~~--~h~--~~v~~v~~s~~~~~~~~s~~~d---------g~ 205 (357)
T 4g56_B 150 DGTQAVSGGKD-----------FSVKVWDLSQKAVLKSYN--AHS--SEVNCVAACPGKDTIFLSCGED---------GR 205 (357)
T ss_dssp SSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS--SCEEEEEECTTCSSCEEEEETT---------SC
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc--CCC--CCEEEEEEccCCCceeeeeccC---------Cc
Confidence 46677777753 347788998876443221 111 11122223 23567777753 35
Q ss_pred EEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 211 LYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 211 v~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
|.+||+.+.+-....... .....-.+++.. ++.+++.|+..+. +.+||+.+..-...-
T Consensus 206 v~~wd~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~~~la~g~~d~~----------------i~~wd~~~~~~~~~~ 265 (357)
T 4g56_B 206 ILLWDTRKPKPATRIDFC----ASDTIPTSVTWHPEKDDTFACGDETGN----------------VSLVNIKNPDSAQTS 265 (357)
T ss_dssp EEECCTTSSSCBCBCCCT----TCCSCEEEEEECTTSTTEEEEEESSSC----------------EEEEESSCGGGCEEE
T ss_pred eEEEECCCCceeeeeeec----cccccccchhhhhcccceEEEeecccc----------------eeEEECCCCcEeEEE
Confidence 778888765432221110 111111222222 4667888877655 778887665322211
Q ss_pred cCCCCCCCcceeEEEEE-C-CeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 289 KIGMPPGPRAGFSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 289 ~~g~~P~~R~g~s~~~~-~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
. .....-.++++. + +++++.|+.. ..|.+||+.+.+-.
T Consensus 266 ~----~~~~~v~~l~~sp~~~~~lasgs~D--------------~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 266 A----VHSQNITGLAYSYHSSPFLASISED--------------CTVAVLDADFSEVF 305 (357)
T ss_dssp C----CCSSCEEEEEECSSSSCCEEEEETT--------------SCEEEECTTSCEEE
T ss_pred e----ccceeEEEEEEcCCCCCEEEEEeCC--------------CEEEEEECCCCcEe
Confidence 1 011112233332 3 3566666543 34889998877543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.74 Score=47.47 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=46.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.+|.+|+.+.++..+.... .... +.+++. +..||+.+...... ..-.+|.++..++..+.+.. .+..
T Consensus 30 ~~~~~d~~~g~~~~~~~~~--~~~p-~~l~~spdg~~l~~~~~~~~~~------~~v~~~~~~~~~g~~~~~~~--~~~~ 98 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDAE--VANP-SYLIPSADGKFVYSVNEFSKDQ------AAVSAFAFDKEKGTLHLLNT--QKTM 98 (361)
T ss_dssp EEEEEETTTCCEEEEEEEE--CSCC-CSEEECTTSSEEEEEECCSSTT------CEEEEEEEETTTTEEEEEEE--EECS
T ss_pred EEEEEeCCCCCEEEeeccc--CCCC-ceEEECCCCCEEEEEEccCCCC------CcEEEEEEeCCCCcEEEeeE--eccC
Confidence 3566678888887665321 1111 122332 34577665431110 01235666776677777654 2211
Q ss_pred -CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 180 -RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 180 -Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
..-+.++.-+++||+.+ +. -..+.+|++..
T Consensus 99 ~~~p~~~~~dg~~l~~~~-~~--------~~~v~~~~~~~ 129 (361)
T 3scy_A 99 GADPCYLTTNGKNIVTAN-YS--------GGSITVFPIGQ 129 (361)
T ss_dssp SSCEEEEEECSSEEEEEE-TT--------TTEEEEEEBCT
T ss_pred CCCcEEEEECCCEEEEEE-CC--------CCEEEEEEeCC
Confidence 12222233233455543 21 24677888764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=94.79 E-value=0.75 Score=46.36 Aligned_cols=135 Identities=12% Similarity=-0.006 Sum_probs=64.6
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
.+.+||+.+......-. .... .-.++.+ ++.+++.||.+ ..+.+||+.+..-...-.. .
T Consensus 196 ~i~i~d~~~~~~~~~~~--~h~~--~v~~~~~s~~~~~l~s~s~D---------g~i~iwd~~~~~~~~~~~~-----~- 256 (340)
T 4aow_A 196 LVKVWNLANCKLKTNHI--GHTG--YLNTVTVSPDGSLCASGGKD---------GQAMLWDLNEGKHLYTLDG-----G- 256 (340)
T ss_dssp CEEEEETTTTEEEEEEC--CCSS--CEEEEEECTTSSEEEEEETT---------CEEEEEETTTTEEEEEEEC-----S-
T ss_pred EEEEEECCCCceeeEec--CCCC--cEEEEEECCCCCEEEEEeCC---------CeEEEEEeccCceeeeecC-----C-
Confidence 47788988776543321 1111 1122233 56677777753 3577888876543222111 1
Q ss_pred CccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCC-----CCcceeEEEEE-CCe
Q 005655 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP-----GPRAGFSMCVH-KKR 308 (685)
Q Consensus 235 ~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P-----~~R~g~s~~~~-~~~ 308 (685)
..-.+++...+..++.|+..+. +.+||+.+..-.......... ....-.++++. +++
T Consensus 257 -~~v~~~~~~~~~~~~~~~~d~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 257 -DIINALCFSPNRYWLCAATGPS----------------IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp -SCEEEEEECSSSSEEEEEETTE----------------EEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred -ceEEeeecCCCCceeeccCCCE----------------EEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 1112233334445566665433 667777655433221111100 01111223333 567
Q ss_pred EEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
.++.||.. ..|.+||+.++
T Consensus 320 ~l~sgs~D--------------g~v~iW~~~tG 338 (340)
T 4aow_A 320 TLFAGYTD--------------NLVRVWQVTIG 338 (340)
T ss_dssp EEEEEETT--------------SCEEEEEEEC-
T ss_pred EEEEEeCC--------------CEEEEEeCCCc
Confidence 77777753 34888888765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=94.78 E-value=1.3 Score=44.67 Aligned_cols=200 Identities=8% Similarity=0.008 Sum_probs=99.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcE--EEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W--~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~ 148 (685)
++++.|. +..||+.+.. .+.+++||+.++.. ..+.... .++ ++++.. +..|| .+....
T Consensus 44 ~~~~s~d-g~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~--~~~--~~~~~s~dg~~l~-~~~~~~--- 105 (331)
T 3u4y_A 44 DTAITSD-CSNVVVTSDF---------CQTLVQIETQLEPPKVVAIQEGQ--SSM--ADVDITPDDQFAV-TVTGLN--- 105 (331)
T ss_dssp EEEECSS-SCEEEEEEST---------TCEEEEEECSSSSCEEEEEEECS--SCC--CCEEECTTSSEEE-ECCCSS---
T ss_pred eEEEcCC-CCEEEEEeCC---------CCeEEEEECCCCceeEEecccCC--CCc--cceEECCCCCEEE-EecCCC---
Confidence 5666662 3457666651 13789999988874 3333322 122 223333 34566 333211
Q ss_pred CccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CC-EEEEEccccCCCCceeeece-EEEEEcCCCc-eEEe
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYND-LYVFDLDQFK-WQEI 224 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~-~lyv~GG~~~~~~~~~~~~d-v~~yD~~t~~-W~~v 224 (685)
....+++||+.++.....-. ....-+.+++. ++ +||+.+... +. +++|++.... ....
T Consensus 106 -----~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~~~~~---------~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 106 -----HPFNMQSYSFLKNKFISTIP----IPYDAVGIAISPNGNGLILIDRSS---------ANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp -----SSCEEEEEETTTTEEEEEEE----CCTTEEEEEECTTSSCEEEEEETT---------TTEEEEEEECTTCCEEEE
T ss_pred -----CcccEEEEECCCCCeEEEEE----CCCCccceEECCCCCEEEEEecCC---------CceEEEEEECCCCcEeec
Confidence 01379999999887655432 12222444443 33 577765431 34 6666655321 1111
Q ss_pred --ccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCcee---EEeecCCCCCCCc
Q 005655 225 --KPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW---SKVKKIGMPPGPR 297 (685)
Q Consensus 225 --~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W---~~~~~~g~~P~~R 297 (685)
... +....-..++.. +..||+.+.... .+.+||+.+.+. ...-..+.
T Consensus 168 ~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~~~----------------~v~v~d~~~~~~~~~~~~~~~~~----- 221 (331)
T 3u4y_A 168 GQEFI-----SGGTRPFNITFTPDGNFAFVANLIGN----------------SIGILETQNPENITLLNAVGTNN----- 221 (331)
T ss_dssp EEEEE-----CSSSSEEEEEECTTSSEEEEEETTTT----------------EEEEEECSSTTSCEEEEEEECSS-----
T ss_pred CCccc-----cCCCCccceEECCCCCEEEEEeCCCC----------------eEEEEECCCCcccceeeeccCCC-----
Confidence 111 111112333333 345777664433 378888877664 22222111
Q ss_pred ceeEEEEE-CCe-EEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 298 AGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 298 ~g~s~~~~-~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.-.++++. +++ +|+.... .+.|++||+.+.+...+..
T Consensus 222 ~~~~~~~spdg~~l~v~~~~--------------~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 222 LPGTIVVSRDGSTVYVLTES--------------TVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp CCCCEEECTTSSEEEEECSS--------------EEEEEEEETTTTEEEEEEE
T ss_pred CCceEEECCCCCEEEEEEcC--------------CCEEEEEECCCCceeeecc
Confidence 11234444 444 6665432 1348999999988765553
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=94.77 E-value=2.9 Score=41.54 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=19.9
Q ss_pred CCeEEEecceecccCCccccccccCCcEEEEECCCC-cEEEEEe
Q 005655 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-RWYPLEL 348 (685)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-~W~~l~~ 348 (685)
++++++.||.. ..|.+|++.+. .|..+..
T Consensus 317 ~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 317 TGTILSSAGDD--------------GKVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp SSCCEEEEETT--------------SCEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEecCC--------------CcEEEEecCcCcchhheee
Confidence 56667777653 34889998764 7777665
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.47 Score=51.88 Aligned_cols=59 Identities=19% Similarity=0.400 Sum_probs=40.6
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
++.+|+|-| +.+|+||..+++.....-+..| . --++....+.+|+|-| +..|+
T Consensus 158 ~~~~yfFkG-----------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG-------------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-----------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-------------NQFLR 210 (460)
T ss_dssp SSEEEEEET-----------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-------------TEEEE
T ss_pred CCeEEEEec-----------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC-------------CEEEE
Confidence 467888888 3579999998876543333322 3 3455556799999988 46788
Q ss_pred EECCCC
Q 005655 161 LDLKTN 166 (685)
Q Consensus 161 yD~~t~ 166 (685)
||..++
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 887654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=3.7 Score=46.99 Aligned_cols=198 Identities=11% Similarity=-0.010 Sum_probs=99.6
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCC--CccccccCeEEEEECCCCcE--EEcccCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPN--QERFHHYKDFWMLDLKTNQW--EQLNLKGC 176 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~--~~~~~~~~dv~~yD~~t~~W--~~~~~~g~ 176 (685)
..|+++|+.+++....... ..+....+.. +++-++++....... .........+|++++.+..= ..+-. .
T Consensus 155 ~~i~v~dl~tg~~~~~~~~---~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~--~ 228 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPLK---DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG--A 228 (693)
T ss_dssp EEEEEEETTTCSEEEEEEE---EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEES--C
T ss_pred EEEEEEECCCCCCCccccC---CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEe--c
Confidence 4789999999987654321 1122222233 544333332221100 00001235699999877643 12211 1
Q ss_pred CC--CCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCC--ceEEeccCCCCCCCCCccceeEEEeCCEEE
Q 005655 177 PS--PRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVF 249 (685)
Q Consensus 177 P~--~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iy 249 (685)
+. +.... .+.+ ++ +|++...... ..+.+|++|+.+. .|..+... ..... ..+...++.||
T Consensus 229 ~~~~~~~~~-~~~~SpDg~~l~~~~~~~~------~~~~i~~~d~~~~~~~~~~l~~~-----~~~~~-~~~~~~g~~l~ 295 (693)
T 3iuj_A 229 IPAQHHRYV-GATVTEDDRFLLISAANST------SGNRLYVKDLSQENAPLLTVQGD-----LDADV-SLVDNKGSTLY 295 (693)
T ss_dssp SGGGCCSEE-EEEECTTSCEEEEEEESSS------SCCEEEEEETTSTTCCCEEEECS-----SSSCE-EEEEEETTEEE
T ss_pred CCCCCeEEE-EEEEcCCCCEEEEEEccCC------CCcEEEEEECCCCCCceEEEeCC-----CCceE-EEEeccCCEEE
Confidence 21 22122 2223 34 4444332211 1368999998765 78887654 11111 12344588999
Q ss_pred EEecccCCCCcccCCCCCCceeeeEEEEeCCC---ceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccc
Q 005655 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT---WEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIM 326 (685)
Q Consensus 250 v~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t---~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~ 326 (685)
+....... ...++.+++.+ ..|+.+.+.. ...- +....++.|++..-...
T Consensus 296 ~~t~~~~~-------------~~~l~~~d~~~~~~~~~~~l~~~~----~~~~-~~s~~g~~lv~~~~~~g--------- 348 (693)
T 3iuj_A 296 LLTNRDAP-------------NRRLVTVDAANPGPAHWRDLIPER----QQVL-TVHSGSGYLFAEYMVDA--------- 348 (693)
T ss_dssp EEECTTCT-------------TCEEEEEETTSCCGGGCEEEECCC----SSCE-EEEEETTEEEEEEEETT---------
T ss_pred EEECCCCC-------------CCEEEEEeCCCCCccccEEEecCC----CCEE-EEEEECCEEEEEEEECC---------
Confidence 98754321 23588888765 3588775421 1122 45555666665443321
Q ss_pred cccCCcEEEEECCCCcEEEEE
Q 005655 327 SLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 327 ~~~~ndl~~yd~~t~~W~~l~ 347 (685)
...|+++++.+.....+.
T Consensus 349 ---~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 349 ---TARVEQFDYEGKRVREVA 366 (693)
T ss_dssp ---EEEEEEECTTSCEEEEEC
T ss_pred ---eeEEEEEECCCCeeEEee
Confidence 345888888765444443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=4.4 Score=41.31 Aligned_cols=210 Identities=10% Similarity=0.053 Sum_probs=107.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCC----CC-CcceeEEEEE--CCEEEEEcC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS----PP-PRSAHQAVSW--KNYLYIFGG 142 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~----P~-~R~~ha~v~~--~~~iyvfGG 142 (685)
+.+++.| ++.|||.... .+.|++|++... .-..+..... +. ...-..+++. ++.|||..+
T Consensus 94 ~gia~d~--~g~l~v~d~~---------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~ 162 (329)
T 3fvz_A 94 HGLSIDT--DGNYWVTDVA---------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG 162 (329)
T ss_dssp EEEEECT--TSCEEEEETT---------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC
T ss_pred eEEEECC--CCCEEEEECC---------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC
Confidence 3455555 4667776541 146888888665 2223321110 01 1112344444 578999875
Q ss_pred ccCCCCCccccccCeEEEEECCCCcEEEcccCCC-----CCCCc-cceEEEE-C-CEEEEEccccCCCCceeeeceEEEE
Q 005655 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-----PSPRS-GHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVF 214 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-----P~~Rs-gh~~v~~-~-~~lyv~GG~~~~~~~~~~~~dv~~y 214 (685)
+. .+.+.+||+....-..+...+. +.... -+++++- + +.||+.... .+.|.+|
T Consensus 163 ~~----------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~---------~~~I~~~ 223 (329)
T 3fvz_A 163 YC----------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE---------NGRIQCF 223 (329)
T ss_dssp SS----------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---------TTEEEEE
T ss_pred CC----------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---------CCEEEEE
Confidence 21 2568899965544343432111 11111 2334443 3 799997653 3579999
Q ss_pred EcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCC
Q 005655 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (685)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P 294 (685)
|+.+.+....-..+ .....-.+++...+.+|+..|.... .......++++++.+.+....-..+ ..
T Consensus 224 ~~~~G~~~~~~~~~----~~~~~~~~~~~~pg~~~~~~g~~~v---------~~~~~~~v~~~~~~~g~~~~~~~~~-~~ 289 (329)
T 3fvz_A 224 KTDTKEFVREIKHA----SFGRNVFAISYIPGFLFAVNGKPYF---------GDQEPVQGFVMNFSSGEIIDVFKPV-RK 289 (329)
T ss_dssp ETTTCCEEEEECCT----TTTTCEEEEEEETTEEEEEECCCCT---------TCSCCCCEEEEETTTCCEEEEECCS-SS
T ss_pred ECCCCcEEEEEecc----ccCCCcceeeecCCEEEEeCCCEEe---------ccCCCcEEEEEEcCCCeEEEEEcCC-CC
Confidence 99866654433221 1111222344445778877775332 0122345888998777655543211 01
Q ss_pred CCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECC
Q 005655 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 295 ~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
....-+++++. ++.|||.... .+.|++|++.
T Consensus 290 ~~~~p~~ia~~~dG~lyvad~~--------------~~~I~~~~~~ 321 (329)
T 3fvz_A 290 HFDMPHDIVASEDGTVYIGDAH--------------TNTVWKFTLT 321 (329)
T ss_dssp CCSSEEEEEECTTSEEEEEESS--------------SCCEEEEEEE
T ss_pred ccCCeeEEEECCCCCEEEEECC--------------CCEEEEEeCC
Confidence 12223344444 5678887643 2457887764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.45 Score=48.08 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=29.5
Q ss_pred ccEEEEEcC-CCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECC--CCcEEEccc
Q 005655 101 GDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLK--TNQWEQLNL 173 (685)
Q Consensus 101 ndv~~yd~~-~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~--t~~W~~~~~ 173 (685)
+.+++|++. +.++..+.... ....-+.++.. + ..||+.+.. . ..+.+|++. ++.+..+..
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~-~----------~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRP-E----------FRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETT-T----------TEEEEEEECTTTCCEEEEEE
T ss_pred CeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecC-C----------CeEEEEEecCCCCceeeccc
Confidence 367888874 44554432211 11112223333 3 456665442 1 346666665 778876654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=2.4 Score=48.10 Aligned_cols=158 Identities=9% Similarity=0.061 Sum_probs=80.5
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCC-----CcEEEcccCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-----NQWEQLNLKG 175 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t-----~~W~~~~~~g 175 (685)
..++++|+.+++-..+.... . ........-++..+++.. -+.++++|+.+ +....+...+
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~--~-~~~~~~~SpdG~~la~~~------------~~~i~v~~~~~~~~~~g~~~~~~~~~ 165 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTN--E-ETASLDFSPVGDRVAYVR------------NHNLYIARGGKLGEGMSRAIAVTIDG 165 (706)
T ss_dssp TEEEEEETTTTEEEEEECCT--T-CCTTCEECTTSSEEEEEE------------TTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred CEEEEEECCCCceEEccCCc--c-cccCCcCCCCCCEEEEEE------------CCeEEEEecCcccccCCCcEEeccCC
Confidence 47899999998877665432 1 111111222343334431 14689999988 7776665422
Q ss_pred CCCCCcc----------ceEEEE--CCEEEEEccccCCCCc------------------------eeeeceEEEEEcCCC
Q 005655 176 CPSPRSG----------HRMVLY--KHKIIVFGGFYDTLRE------------------------VRYYNDLYVFDLDQF 219 (685)
Q Consensus 176 ~P~~Rsg----------h~~v~~--~~~lyv~GG~~~~~~~------------------------~~~~~dv~~yD~~t~ 219 (685)
......+ ...+.| +++.++++.++..... ......|++||+.+.
T Consensus 166 ~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 166 TETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp BTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred CCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 1110000 122333 5666666654321100 012367999999988
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc-eeEEee
Q 005655 220 KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW-EWSKVK 288 (685)
Q Consensus 220 ~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~-~W~~~~ 288 (685)
.-..+.... +....-.+++.. ++..++++..+.. .....++.+|+.+. .+..+.
T Consensus 246 ~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~~~~~~-----------~~~~~v~~~d~~~g~~~~~~~ 301 (706)
T 2z3z_A 246 KTVYLQTGE----PKEKFLTNLSWSPDENILYVAEVNRA-----------QNECKVNAYDAETGRFVRTLF 301 (706)
T ss_dssp EEEECCCCS----CTTCEEEEEEECTTSSEEEEEEECTT-----------SCEEEEEEEETTTCCEEEEEE
T ss_pred ceEeeccCC----CCceeEeeEEEECCCCEEEEEEeCCC-----------CCeeEEEEEECCCCceeeEEE
Confidence 765554320 111111222222 5554455444322 23456899999887 676654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.64 E-value=1.8 Score=43.10 Aligned_cols=169 Identities=13% Similarity=0.033 Sum_probs=82.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCC-cceeEEEEE-CCEEEEE----cCccC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP-RSAHQAVSW-KNYLYIF----GGEFT 145 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~-R~~ha~v~~-~~~iyvf----GG~~~ 145 (685)
.++++.| ++.||+... + .+.|++||+.+++...+.......+ ..-..+++. ++.||+. |....
T Consensus 72 ~~l~~~~--dg~l~v~~~----~-----~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~ 140 (296)
T 3e5z_A 72 NGHCLNK--QGHLIACSH----G-----LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP 140 (296)
T ss_dssp EEEEECT--TCCEEEEET----T-----TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred ceeeECC--CCcEEEEec----C-----CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence 4455555 566766543 1 1368999998888876643210011 111223333 5788886 43110
Q ss_pred CC--CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcC-CCce
Q 005655 146 SP--NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKW 221 (685)
Q Consensus 146 s~--~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~~W 221 (685)
.. ..........+|+|++. +....+... . ..-.+++.. ++.+++.+.. .+.|++|++. +...
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-~---~~~~gi~~s~dg~~lv~~~~---------~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 141 EEGYGGEMELPGRWVFRLAPD-GTLSAPIRD-R---VKPNGLAFLPSGNLLVSDTG---------DNATHRYCLNARGET 206 (296)
T ss_dssp GGSSCCCCCSSSCEEEEECTT-SCEEEEECC-C---SSEEEEEECTTSCEEEEETT---------TTEEEEEEECSSSCE
T ss_pred cccccccccCCCcEEEEECCC-CCEEEeecC-C---CCCccEEECCCCCEEEEeCC---------CCeEEEEEECCCCcC
Confidence 00 00000012579999987 665554321 1 111223332 4555543321 2578899886 4554
Q ss_pred -EEecc-CCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 222 -QEIKP-RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 222 -~~v~~-~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
..... .... ..| .+++.. ++.|||.. .. .+++|++.......+.
T Consensus 207 ~~~~~~~~~~~--~~p---~~i~~d~~G~l~v~~--~~----------------~v~~~~~~g~~~~~~~ 253 (296)
T 3e5z_A 207 EYQGVHFTVEP--GKT---DGLRVDAGGLIWASA--GD----------------GVHVLTPDGDELGRVL 253 (296)
T ss_dssp EEEEEEECCSS--SCC---CSEEEBTTSCEEEEE--TT----------------EEEEECTTSCEEEEEE
T ss_pred cCCCeEeeCCC--CCC---CeEEECCCCCEEEEc--CC----------------eEEEECCCCCEEEEEE
Confidence 21111 1001 111 123443 67788776 22 2788999866555554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=94.62 E-value=3.8 Score=40.36 Aligned_cols=185 Identities=9% Similarity=0.044 Sum_probs=94.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
+++++.+. ++.|||.+.. ..+.+++||+.......+.... ...-+++++. ++.|||....
T Consensus 80 ~~i~~~~~-~g~l~v~~~~--------~~~~i~~~d~~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~------- 140 (286)
T 1q7f_A 80 NRVAVVRN-SGDIIVTERS--------PTHQIQIYNQYGQFVRKFGATI---LQHPRGVTVDNKGRIIVVECK------- 140 (286)
T ss_dssp EEEEEETT-TTEEEEEECG--------GGCEEEEECTTSCEEEEECTTT---CSCEEEEEECTTSCEEEEETT-------
T ss_pred eEEEEEcC-CCeEEEEcCC--------CCCEEEEECCCCcEEEEecCcc---CCCceEEEEeCCCCEEEEECC-------
Confidence 34444222 5788887641 0136888996655444443321 1122344443 4678887542
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
.+.+++||+.......+...+ ....-+++++- ++.||+.+.. .+.|.+||+.......+...
T Consensus 141 ----~~~i~~~~~~g~~~~~~~~~~--~~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~~~~-- 203 (286)
T 1q7f_A 141 ----VMRVIIFDQNGNVLHKFGCSK--HLEFPNGVVVNDKQEIFISDNR---------AHCVKVFNYEGQYLRQIGGE-- 203 (286)
T ss_dssp ----TTEEEEECTTSCEEEEEECTT--TCSSEEEEEECSSSEEEEEEGG---------GTEEEEEETTCCEEEEESCT--
T ss_pred ----CCEEEEEcCCCCEEEEeCCCC--ccCCcEEEEECCCCCEEEEECC---------CCEEEEEcCCCCEEEEEccC--
Confidence 246889997665544443211 11111223333 5788886542 35789999866544444322
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CC
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~ 307 (685)
+.. ..-.++++. ++.|||...... ..+.+|++....-..+.... +. ..-+++++. ++
T Consensus 204 g~~---~~p~~i~~d~~G~l~v~~~~~~---------------~~i~~~~~~g~~~~~~~~~~--~~-~~~~~i~~~~~g 262 (286)
T 1q7f_A 204 GIT---NYPIGVGINSNGEILIADNHNN---------------FNLTIFTQDGQLISALESKV--KH-AQCFDVALMDDG 262 (286)
T ss_dssp TTS---CSEEEEEECTTCCEEEEECSSS---------------CEEEEECTTSCEEEEEEESS--CC-SCEEEEEEETTT
T ss_pred Ccc---CCCcEEEECCCCCEEEEeCCCC---------------EEEEEECCCCCEEEEEcccC--CC-CcceeEEECCCC
Confidence 111 111234443 667888765432 13778887655444443211 11 112344444 67
Q ss_pred eEEEec
Q 005655 308 RALLFG 313 (685)
Q Consensus 308 ~iyvfG 313 (685)
++|+..
T Consensus 263 ~l~vs~ 268 (286)
T 1q7f_A 263 SVVLAS 268 (286)
T ss_dssp EEEEEE
T ss_pred cEEEEC
Confidence 888773
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.54 Score=49.95 Aligned_cols=51 Identities=10% Similarity=-0.041 Sum_probs=27.3
Q ss_pred EEEEeCCCceeEEeecCCCCCCCcceeEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+.+||+.+..-...... .....+++.. ++.+++.+|..+ +.|.+||+.+..
T Consensus 303 I~iwd~~t~~~~~~~~~-----~~~v~~~~~~~~~~~lv~~sg~~d-------------~~I~iwd~~~~~ 355 (420)
T 4gga_A 303 IRIWNVCSGACLSAVDA-----HSQVCSILWSPHYKELISGHGFAQ-------------NQLVIWKYPTMA 355 (420)
T ss_dssp EEEEETTTTEEEEEEEC-----SSCEEEEEEETTTTEEEEEECTTT-------------CCEEEEETTTCC
T ss_pred EEEEeCCccccceeecc-----ccceeeeeecCCCCeEEEEEecCC-------------CEEEEEECCCCc
Confidence 67788877654443321 1112333333 344555445432 459999987653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=94.60 E-value=3.2 Score=43.21 Aligned_cols=184 Identities=14% Similarity=0.056 Sum_probs=88.1
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcce-eEEEEE---CCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSA-HQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG 175 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~-ha~v~~---~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g 175 (685)
.+.+||+.++.-...-....|..... ...+.+ ++.+++.|+.+. .+.+||+.... -..+..
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----------~v~~wd~~~~~~~~~~~~~-- 247 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-----------TVRLWDLRITSRAVRTYHG-- 247 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-----------CEEEEETTTTCCCCEEECC--
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC-----------eEEEEECCCCCcceEEECC--
Confidence 57788888876553322111111111 112222 467888887643 47788876321 111111
Q ss_pred CCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcc-ceeEEEe-CCEEEEE
Q 005655 176 CPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS-GFQFFVY-QDEVFLY 251 (685)
Q Consensus 176 ~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs-~~s~~~~-~~~Iyv~ 251 (685)
.... -..+.+ ++.+++.|+.+ ..|.+||+.+..-..+-............ -.+++.. ++.+++.
T Consensus 248 -h~~~--v~~v~~~p~~~~l~s~s~D---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 315 (380)
T 3iz6_a 248 -HEGD--INSVKFFPDGQRFGTGSDD---------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA 315 (380)
T ss_dssp -CSSC--CCEEEECTTSSEEEEECSS---------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE
T ss_pred -cCCC--eEEEEEecCCCeEEEEcCC---------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEE
Confidence 1111 112333 56677777753 35788898876544332221000000111 1222332 6677777
Q ss_pred ecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee-cCCCCCCCcceeEEEEE-CCeEEEecceecccCCcccccccc
Q 005655 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK-KIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLF 329 (685)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~-~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~ 329 (685)
|+.++. +.+||+.+..-.... ........+. .++++. ++..++.||..+
T Consensus 316 g~~dg~----------------i~vwd~~~~~~~~~~~~~~~~h~~~v-~~l~~s~dg~~l~sgs~D~------------ 366 (380)
T 3iz6_a 316 GYSNGD----------------CYVWDTLLAEMVLNLGTLQNSHEGRI-SCLGLSSDGSALCTGSWDK------------ 366 (380)
T ss_dssp ECTTSC----------------EEEEETTTCCEEEEECCSCSSCCCCC-CEEEECSSSSEEEEECTTS------------
T ss_pred EECCCC----------------EEEEECCCCceEEEEecccCCCCCce-EEEEECCCCCEEEEeeCCC------------
Confidence 776654 788887665433221 1100011111 223333 677778887643
Q ss_pred CCcEEEEECCCC
Q 005655 330 LNELYGFQLDNH 341 (685)
Q Consensus 330 ~ndl~~yd~~t~ 341 (685)
.|.+|++...
T Consensus 367 --~i~iW~~~~~ 376 (380)
T 3iz6_a 367 --NLKIWAFSGH 376 (380)
T ss_dssp --CEEEEECCSS
T ss_pred --CEEEEecCCC
Confidence 3777776653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.24 Score=57.63 Aligned_cols=198 Identities=11% Similarity=0.080 Sum_probs=97.7
Q ss_pred CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C--CEEEEEcCccCCCCCccccccCeE
Q 005655 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K--NYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~--~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
+.+++.|+. + +.+.+||+.++.|..+..... ....-.+++.. + +.++++||.. ..+
T Consensus 67 ~~~l~s~s~--D-------g~I~vwd~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~~l~sgs~d-----------g~I 125 (753)
T 3jro_A 67 GTILASCSY--D-------GKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSD-----------GKV 125 (753)
T ss_dssp CSEEEEEET--T-------SCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETT-----------SEE
T ss_pred CCEEEEEeC--C-------CeEEEEECCCCcccccccccC-CCCCeEEEEECCCCCCCEEEEEeCC-----------CcE
Confidence 667777773 2 358889999998775544321 11122223332 2 5677777753 357
Q ss_pred EEEECCCCcEEEc-ccCCCCCCCccceEEEE---------------CCEEEEEccccCCCCceeeeceEEEEEcCCC--c
Q 005655 159 WMLDLKTNQWEQL-NLKGCPSPRSGHRMVLY---------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--K 220 (685)
Q Consensus 159 ~~yD~~t~~W~~~-~~~g~P~~Rsgh~~v~~---------------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~ 220 (685)
.+||+.+..-... ...+.+. ...++.+ ++.+++.|+.+ ..|.+||+.+. .
T Consensus 126 ~vwdl~~~~~~~~~~~~~~~~---~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d---------g~I~iwd~~~~~~~ 193 (753)
T 3jro_A 126 SVVEFKENGTTSPIIIDAHAI---GVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQT 193 (753)
T ss_dssp EEEECCSSSCCCCEEEECCSS---CEEEEEECCCC---------CGGGCCEEEEETT---------SCEEEEEEETTTTE
T ss_pred EEEEeecCCCcceeEeecCCC---ceEEEEecCcccccccccccCCCCCEEEEEECC---------CeEEEEeccCCccc
Confidence 7888876521111 1100111 1112222 25666677653 34677776543 3
Q ss_pred eEEeccCCCCCCCCCccceeEEEe-C---CEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCC
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPP 294 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~-~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P 294 (685)
+..+..... ....-.+++.. + +.+++.||..+. +.+||+.+. .+...... ...
T Consensus 194 ~~~~~~~~~----h~~~V~~l~~sp~~~~~~~l~s~s~Dg~----------------I~iwd~~~~~~~~~~~~~~-~~~ 252 (753)
T 3jro_A 194 YVLESTLEG----HSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EEK 252 (753)
T ss_dssp EEEEEEECC----CSSCEEEEEECCCCSSSEEEEEEESSSC----------------EEEEEESSSSSCCBCCBSS-SSC
T ss_pred ceeeeeecC----CCCcEEEEEeccCCCCCCEEEEEecCCE----------------EEEecCCCCCCcceeEEec-cCC
Confidence 444433311 11111223333 4 788888888765 666666543 22211110 001
Q ss_pred CCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCC-CcEEEEE
Q 005655 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-HRWYPLE 347 (685)
Q Consensus 295 ~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t-~~W~~l~ 347 (685)
....-.++++. ++..++.||.. +.|.+|++.+ ..|..+.
T Consensus 253 ~~~~v~~l~~spdg~~l~s~s~D--------------g~I~vwd~~~~~~~~~~~ 293 (753)
T 3jro_A 253 FPDVLWRASWSLSGNVLALSGGD--------------NKVTLWKENLEGKWEPAG 293 (753)
T ss_dssp CSSCCCCEEECTTTCCEEEECSS--------------SCEECCBCCSSSCCBCCC
T ss_pred CCCceEEEEEcCCCCEEEEEcCC--------------CEEEEEecCCCCCccccc
Confidence 11112233333 66777777753 3488888774 4665544
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=94.52 E-value=4.5 Score=40.81 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=68.6
Q ss_pred CCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccC
Q 005655 67 SPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFT 145 (685)
Q Consensus 67 ~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~ 145 (685)
.......+++.+ ++.||+.--. .+.|++||+....-..+.. +..-+.+++. ++.|||......
T Consensus 30 ~~~~pegia~~~--~g~lyv~d~~---------~~~I~~~d~~g~~~~~~~~-----~~~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 30 VNTFLENLASAP--DGTIFVTNHE---------VGEIVSITPDGNQQIHATV-----EGKVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp TTCCEEEEEECT--TSCEEEEETT---------TTEEEEECTTCCEEEEEEC-----SSEEEEEEECTTSCEEEEEECTT
T ss_pred CCCCcceEEECC--CCCEEEEeCC---------CCeEEEECCCCceEEEEeC-----CCCceeEEEcCCCcEEEEeccCC
Confidence 345566777766 5678887531 1368999988753222222 1233444444 467888753211
Q ss_pred CCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 146 s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
-..+++||+.++....+.. .+..+.....+.+ ++.+|+.-- ....||++|+.+.
T Consensus 94 ---------~~~v~~~d~~~g~~~~~~~--~~~~~~~~g~~~~~~~~~~v~d~---------~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 94 ---------SIPVVSLVKSDGTVETLLT--LPDAIFLNGITPLSDTQYLTADS---------YRGAIWLIDVVQP 148 (306)
T ss_dssp ---------SCEEEEEECTTSCEEEEEE--CTTCSCEEEEEESSSSEEEEEET---------TTTEEEEEETTTT
T ss_pred ---------cceEEEEcCCCCeEEEEEe--CCCccccCcccccCCCcEEEEEC---------CCCeEEEEeCCCC
Confidence 1248899998888877655 3445555555555 445666431 1357899998764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.97 Score=46.60 Aligned_cols=147 Identities=6% Similarity=0.160 Sum_probs=73.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++...| ++.+++.|+. + +.+.+|+..+..+..+..... ....-.+++.. ++.+++.|+..
T Consensus 66 ~~~~sp--~g~~l~s~s~--D-------~~v~iw~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~s~D------- 126 (345)
T 3fm0_A 66 KVAWSP--CGNYLASASF--D-------ATTCIWKKNQDDFECVTTLEG-HENEVKSVAWAPSGNLLATCSRD------- 126 (345)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEEECCC-EEEEEEECC-CSSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEEC--C-------CcEEEEEccCCCeEEEEEccC-CCCCceEEEEeCCCCEEEEEECC-------
Confidence 444555 5666777762 2 246777877776654432211 11111222222 46677777753
Q ss_pred ccccCeEEEEECCCC-cEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 152 FHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~-~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
..+.+||+.+. .+..+.. +.........+.+ ++.+++.|+.+ ..+.+||..+..|..+....
T Consensus 127 ----~~v~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d---------~~i~~w~~~~~~~~~~~~~~ 191 (345)
T 3fm0_A 127 ----KSVWVWEVDEEDEYECVSV--LNSHTQDVKHVVWHPSQELLASASYD---------DTVKLYREEEDDWVCCATLE 191 (345)
T ss_dssp ----SCEEEEEECTTSCEEEEEE--ECCCCSCEEEEEECSSSSCEEEEETT---------SCEEEEEEETTEEEEEEEEC
T ss_pred ----CeEEEEECCCCCCeEEEEE--ecCcCCCeEEEEECCCCCEEEEEeCC---------CcEEEEEecCCCEEEEEEec
Confidence 34777887654 3333322 1111111223333 45677777753 35778888888776554431
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
.. ...-.+++.. ++.+++.|+.++.
T Consensus 192 ~h----~~~v~~l~~sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 192 GH----ESTVWSLAFDPSGQRLASCSDDRT 217 (345)
T ss_dssp CC----SSCEEEEEECTTSSEEEEEETTSC
T ss_pred CC----CCceEEEEECCCCCEEEEEeCCCe
Confidence 11 1111222222 5667777776654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.49 E-value=1.7 Score=44.01 Aligned_cols=187 Identities=10% Similarity=0.090 Sum_probs=86.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++...| ++.+++.|+. + +.+.+||+.+.+....... ...-.+++.. ++..+++++.....
T Consensus 79 ~~~~~~--~~~~l~s~~~--d-------g~i~iwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~~---- 139 (369)
T 3zwl_B 79 SIDVDC--FTKYCVTGSA--D-------YSIKLWDVSNGQCVATWKS----PVPVKRVEFSPCGNYFLAILDNVMK---- 139 (369)
T ss_dssp EEEECT--TSSEEEEEET--T-------TEEEEEETTTCCEEEEEEC----SSCEEEEEECTTSSEEEEEECCBTT----
T ss_pred EEEEcC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEeec----CCCeEEEEEccCCCEEEEecCCccC----
Confidence 344454 4556666652 2 3688899988765533221 1112223333 35555555433111
Q ss_pred ccccCeEEEEECCCCc----EEEcccCCC-----CCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCC-C
Q 005655 152 FHHYKDFWMLDLKTNQ----WEQLNLKGC-----PSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-F 219 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~----W~~~~~~g~-----P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~ 219 (685)
....+.+||+.+.. +........ .........+.+ ++.+++.|+.. ..|.+||+.+ .
T Consensus 140 --~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~ 208 (369)
T 3zwl_B 140 --NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD---------GKISKYDVSNNY 208 (369)
T ss_dssp --BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT---------SEEEEEETTTTT
T ss_pred --CCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC---------CEEEEEECCCCc
Confidence 12456667665432 222211100 111112223333 45566666642 4688999987 3
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcc
Q 005655 220 KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (685)
Q Consensus 220 ~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~ 298 (685)
.-...-.. ....-.+++.. ++.+++.|+..+. +.+||+.+......-.. ...
T Consensus 209 ~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~v~d~~~~~~~~~~~~-----~~~ 261 (369)
T 3zwl_B 209 EYVDSIDL------HEKSISDMQFSPDLTYFITSSRDTN----------------SFLVDVSTLQVLKKYET-----DCP 261 (369)
T ss_dssp EEEEEEEC------CSSCEEEEEECTTSSEEEEEETTSE----------------EEEEETTTCCEEEEEEC-----SSC
T ss_pred EeEEEEec------CCCceeEEEECCCCCEEEEecCCce----------------EEEEECCCCceeeeecC-----CCC
Confidence 32222111 11112223333 5666777766543 77888877654443321 111
Q ss_pred eeEEEEE-CCeEEEeccee
Q 005655 299 GFSMCVH-KKRALLFGGVV 316 (685)
Q Consensus 299 g~s~~~~-~~~iyvfGG~~ 316 (685)
..++++. .+..+++|+..
T Consensus 262 ~~~~~~~~~~~~l~~~~~~ 280 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQ 280 (369)
T ss_dssp EEEEEECSSSSEEEEEECC
T ss_pred ceeEEecCCCceEEEeecC
Confidence 2233333 56666666543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.47 E-value=1.4 Score=45.69 Aligned_cols=135 Identities=13% Similarity=0.007 Sum_probs=71.1
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE----CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (685)
..+.+||+.+......-. ...... .++.+ ++.+++.|+.+ ..|.+||+.+.+....-..
T Consensus 176 ~~v~lwd~~~~~~~~~~~--~h~~~v--~~~~~~~~~~g~~l~sgs~D---------g~v~~wd~~~~~~~~~~~~---- 238 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFH--GHGADV--LCLDLAPSETGNTFVSGGCD---------KKAMVWDMRSGQCVQAFET---- 238 (354)
T ss_dssp SEEEEEETTTCCEEEEEE--CCSSCE--EEEEECCCSSCCEEEEEETT---------SCEEEEETTTCCEEEEECC----
T ss_pred CcEEEEeCCCCeEEEEEc--CCCCCe--EEEEEEeCCCCCEEEEEeCC---------CeEEEEECCCCcEEEEecC----
Confidence 457788988876433211 111111 11222 34677777753 3688899988765433211
Q ss_pred CCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE--CCe
Q 005655 232 WPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKR 308 (685)
Q Consensus 232 ~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~--~~~ 308 (685)
. ...-.+++.. ++.+++.|+.++. +.+||+.+..-..+-.. .....+.+.+.+ +++
T Consensus 239 -h-~~~v~~v~~~p~~~~l~s~s~D~~----------------v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 239 -H-ESDVNSVRYYPSGDAFASGSDDAT----------------CRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGR 297 (354)
T ss_dssp -C-SSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSS
T ss_pred -C-CCCeEEEEEeCCCCEEEEEeCCCe----------------EEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCC
Confidence 1 1111122222 5667888887765 77888876643322211 112223333333 567
Q ss_pred EEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+++.|+.. +.|.+||+.+..
T Consensus 298 ~l~~g~~d--------------~~i~vwd~~~~~ 317 (354)
T 2pbi_B 298 LLFAGYND--------------YTINVWDVLKGS 317 (354)
T ss_dssp EEEEEETT--------------SCEEEEETTTCS
T ss_pred EEEEEECC--------------CcEEEEECCCCc
Confidence 77776642 358999987653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=5 Score=40.85 Aligned_cols=199 Identities=10% Similarity=0.006 Sum_probs=104.7
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCC--cEEEcccCCC-
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC- 176 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~--~W~~~~~~g~- 176 (685)
+.++++|+.+.+........ .-..-+.+++. ++.|||.... .+.+.+||+... .-..+...+.
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~--~~~~p~gia~d~~g~l~v~d~~-----------~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKN--LFYLPHGLSIDTDGNYWVTDVA-----------LHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CCEEEECTTTCCEEEEECTT--TCSSEEEEEECTTSCEEEEETT-----------TTEEEEECTTCSSCCSEEESBTTBC
T ss_pred CcEEEEECCCCeEEeccCCC--ccCCceEEEECCCCCEEEEECC-----------CCEEEEEeCCCCeEEEEEecccCCC
Confidence 46999999887765432211 11122344444 5779987652 256889998765 2233322111
Q ss_pred ---CCCCccc-eEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC--CCCcc-ceeEEEe-C-
Q 005655 177 ---PSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW--PSPRS-GFQFFVY-Q- 245 (685)
Q Consensus 177 ---P~~Rsgh-~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~--P~~Rs-~~s~~~~-~- 245 (685)
+...... .+++. ++.||+..++. .+.|.+||+....-..+.....+.. +.... -+++++. +
T Consensus 136 g~~~~~~~~P~~ia~~~~~g~lyv~d~~~--------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~ 207 (329)
T 3fvz_A 136 GSDQNHFCQPTDVAVEPSTGAVFVSDGYC--------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL 207 (329)
T ss_dssp CCSTTCCSSEEEEEECTTTCCEEEEECSS--------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT
T ss_pred CCCccccCCCcEEEEeCCCCeEEEEeCCC--------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC
Confidence 1111122 33333 57899987531 3568899865544333332211100 11111 2334443 3
Q ss_pred CEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCcccc
Q 005655 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (685)
Q Consensus 246 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~ 325 (685)
+.|||....... +.+|++.+.+....-.. ......-.++++..+.+|+..|.....
T Consensus 208 g~l~v~d~~~~~----------------I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~------ 263 (329)
T 3fvz_A 208 DQLCVADRENGR----------------IQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFLFAVNGKPYFG------ 263 (329)
T ss_dssp TEEEEEETTTTE----------------EEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEEEEEECCCCTT------
T ss_pred CEEEEEECCCCE----------------EEEEECCCCcEEEEEec--cccCCCcceeeecCCEEEEeCCCEEec------
Confidence 899998765433 88999886655544321 112222335555567777777653211
Q ss_pred ccccCCcEEEEECCCCcEEE
Q 005655 326 MSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 326 ~~~~~ndl~~yd~~t~~W~~ 345 (685)
....+.+++||+.+.....
T Consensus 264 -~~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 264 -DQEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp -CSCCCCEEEEETTTCCEEE
T ss_pred -cCCCcEEEEEEcCCCeEEE
Confidence 1124579999988876554
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.39 E-value=1.2 Score=46.29 Aligned_cols=147 Identities=12% Similarity=-0.023 Sum_probs=73.3
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeece
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYND 210 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~d 210 (685)
++.+++.|+.. ..+.++|+.++.-...-. ...... .++.+ +..+++.|+.+ ..
T Consensus 138 dg~~l~sgs~d-----------~~i~iwd~~~~~~~~~~~--~h~~~V--~~~~~~~~~~~~l~s~s~D---------~~ 193 (344)
T 4gqb_B 138 SGTQAVSGSKD-----------ICIKVWDLAQQVVLSSYR--AHAAQV--TCVAASPHKDSVFLSCSED---------NR 193 (344)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSSCE--EEEEECSSCTTEEEEEETT---------SC
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc--CcCCce--EEEEecCCCCCceeeeccc---------cc
Confidence 46677777753 347888998875432211 111111 22222 33577777753 35
Q ss_pred EEEEEcCCCceEEeccCCCCCCCCCcc-ceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 211 LYVFDLDQFKWQEIKPRFGSMWPSPRS-GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 211 v~~yD~~t~~W~~v~~~~~~~~P~~Rs-~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
|.+||+.+.+-...-.. ..... -.+++.. ++.+++.|+.++. +.+||+.+.+-...
T Consensus 194 v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~l~sg~~dg~----------------v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 194 ILLWDTRCPKPASQIGC-----SAPGYLPTSLAWHPQQSEVFVFGDENGT----------------VSLVDTKSTSCVLS 252 (344)
T ss_dssp EEEEETTSSSCEEECC---------CCCEEEEEECSSCTTEEEEEETTSE----------------EEEEESCC--CCEE
T ss_pred cccccccccceeeeeec-----ceeeccceeeeecCCCCcceEEeccCCc----------------EEEEECCCCcEEEE
Confidence 78899987654432211 11111 1122222 5668888887654 67788765432111
Q ss_pred ecCCCCCCCcceeEEEEE-CC-eEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 288 KKIGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 288 ~~~g~~P~~R~g~s~~~~-~~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
-. + ....-.++++. ++ ++++.|+.. ..|.+||+.+..-
T Consensus 253 ~~-~---h~~~v~~v~fsp~g~~~lasgs~D--------------~~i~vwd~~~~~~ 292 (344)
T 4gqb_B 253 SA-V---HSQCVTGLVFSPHSVPFLASLSED--------------CSLAVLDSSLSEL 292 (344)
T ss_dssp EE-C---CSSCEEEEEECSSSSCCEEEEETT--------------SCEEEECTTCCEE
T ss_pred Ec-C---CCCCEEEEEEccCCCeEEEEEeCC--------------CeEEEEECCCCcE
Confidence 10 0 11112233333 33 556666543 3488899887653
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=94.38 E-value=2.4 Score=42.32 Aligned_cols=123 Identities=10% Similarity=0.123 Sum_probs=60.8
Q ss_pred eEEEEeccCC-CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEe-cCCCCCCC-cceeEEEEE-CCEEEEEcCccCCC
Q 005655 72 CSLNINPLKE-TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI-SSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~-~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l-~s~~~P~~-R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
+++++.+ + +.|||.+.. +.+++||+. ++...+ .......+ ..-+.++.. ++.||+........
T Consensus 74 ~~i~~~~--~~g~l~v~~~~----------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~ 140 (314)
T 1pjx_A 74 AGCQCDR--DANQLFVADMR----------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVA 140 (314)
T ss_dssp EEEEECS--SSSEEEEEETT----------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCT
T ss_pred ceEEEec--CCCcEEEEECC----------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccc
Confidence 3455554 4 678876541 258899998 777765 32211111 112333333 57788865432100
Q ss_pred ----CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-----CC-EEEEEccccCCCCceeeeceEEEEEcC
Q 005655 148 ----NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 148 ----~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-----~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
..........+++||+. .+...+... ... -+.++.. ++ .||+.... .+.|++||+.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-~~~---~~~i~~~~~~d~dg~~l~v~~~~---------~~~i~~~~~~ 206 (314)
T 1pjx_A 141 PADYTRSMQEKFGSIYCFTTD-GQMIQVDTA-FQF---PNGIAVRHMNDGRPYQLIVAETP---------TKKLWSYDIK 206 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-ESS---EEEEEEEECTTSCEEEEEEEETT---------TTEEEEEEEE
T ss_pred cccccccccCCCCeEEEECCC-CCEEEeccC-CCC---cceEEEecccCCCCCEEEEEECC---------CCeEEEEECC
Confidence 00000112579999987 666554321 111 1233333 23 56665432 2568888875
Q ss_pred -CCce
Q 005655 218 -QFKW 221 (685)
Q Consensus 218 -t~~W 221 (685)
+..+
T Consensus 207 ~~g~~ 211 (314)
T 1pjx_A 207 GPAKI 211 (314)
T ss_dssp ETTEE
T ss_pred CCCcc
Confidence 4433
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.36 E-value=1.9 Score=49.86 Aligned_cols=143 Identities=12% Similarity=0.133 Sum_probs=77.7
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
++.|||+||.. +.+++||+.++.+..+...+.+....-.+++.- ++.|++ |.. .-+.
T Consensus 482 ~g~lWi~~~t~-----------~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~----------~Gl~ 539 (758)
T 3ott_A 482 EGNVWVLLYNN-----------KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFH----------GGVM 539 (758)
T ss_dssp TSCEEEEETTC-----------SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EET----------TEEE
T ss_pred CCCEEEEccCC-----------CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-Eec----------CceE
Confidence 47899876642 358899999999988754222211111222222 567886 331 3488
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCC
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~ 292 (685)
+||+.+..+..+.. ..+|. ..-++++..++.|+|... .. +.+|||.+.+.....
T Consensus 540 ~~~~~~~~~~~~~~---~gl~~-~~i~~i~~~~g~lWi~t~--~G----------------l~~~~~~~~~~~~~~---- 593 (758)
T 3ott_A 540 RINPKDESQQSISF---GSFSN-NEILSMTCVKNSIWVSTT--NG----------------LWIIDRKTMDARQQN---- 593 (758)
T ss_dssp EECC--CCCCBCCC---CC----CCEEEEEEETTEEEEEES--SC----------------EEEEETTTCCEEEC-----
T ss_pred EEecCCCceEEecc---cCCCc-cceEEEEECCCCEEEECC--CC----------------eEEEcCCCceeEEec----
Confidence 99998887766532 11232 223334444788887652 22 789999988766542
Q ss_pred CCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 293 PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 293 ~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
.|..... ++++. .+--+.|||..+ +..|+|..
T Consensus 594 ~~~~~~~-~~~~~~~~G~l~fG~~~G---------------l~~f~p~~ 626 (758)
T 3ott_A 594 MTNKRFT-SLLFDPKEDCVYLGGADG---------------FGISHSNL 626 (758)
T ss_dssp -CCCCCS-EEEEETTTTEEEEECBSE---------------EEEEEC--
T ss_pred CCCCcee-eeEEECCCCcEEEecCCc---------------eEEEChhh
Confidence 1222222 23333 344556777654 77777763
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=94.31 E-value=1.4 Score=44.21 Aligned_cols=103 Identities=15% Similarity=0.052 Sum_probs=54.9
Q ss_pred EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCc
Q 005655 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGI 269 (685)
Q Consensus 191 ~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (685)
.+++.||.+ ..+.+||+.+......-.. . ...-.+++.. ++.+++.|+.++.
T Consensus 186 ~~~~s~~~d---------~~i~i~d~~~~~~~~~~~~-----h-~~~v~~~~~s~~~~~l~s~s~Dg~------------ 238 (340)
T 4aow_A 186 PIIVSCGWD---------KLVKVWNLANCKLKTNHIG-----H-TGYLNTVTVSPDGSLCASGGKDGQ------------ 238 (340)
T ss_dssp CEEEEEETT---------SCEEEEETTTTEEEEEECC-----C-SSCEEEEEECTTSSEEEEEETTCE------------
T ss_pred cEEEEEcCC---------CEEEEEECCCCceeeEecC-----C-CCcEEEEEECCCCCEEEEEeCCCe------------
Confidence 455566542 3578889887654433221 1 1111223333 6677888877654
Q ss_pred eeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 270 IHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 270 ~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
+.+||+.+..-...... ...-.+++...+..++.|+.. +.|.+||+.+..-
T Consensus 239 ----i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~d--------------~~i~iwd~~~~~~ 289 (340)
T 4aow_A 239 ----AMLWDLNEGKHLYTLDG-----GDIINALCFSPNRYWLCAATG--------------PSIKIWDLEGKII 289 (340)
T ss_dssp ----EEEEETTTTEEEEEEEC-----SSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTEE
T ss_pred ----EEEEEeccCceeeeecC-----CceEEeeecCCCCceeeccCC--------------CEEEEEECCCCeE
Confidence 67788776543332221 111233444455556666642 3488899876543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.29 E-value=1.6 Score=45.27 Aligned_cols=134 Identities=15% Similarity=0.031 Sum_probs=68.9
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE---CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
.+.+||+.+.+....-... ... -.++... ++.+++.|+.+ ..+.+||+.+......-. ...
T Consensus 177 ~v~lwd~~~~~~~~~~~~h--~~~-v~~~~~~~~~~g~~l~sgs~D-----------g~v~~wd~~~~~~~~~~~--~h~ 240 (354)
T 2pbi_B 177 TCALWDVESGQLLQSFHGH--GAD-VLCLDLAPSETGNTFVSGGCD-----------KKAMVWDMRSGQCVQAFE--THE 240 (354)
T ss_dssp EEEEEETTTCCEEEEEECC--SSC-EEEEEECCCSSCCEEEEEETT-----------SCEEEEETTTCCEEEEEC--CCS
T ss_pred cEEEEeCCCCeEEEEEcCC--CCC-eEEEEEEeCCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEec--CCC
Confidence 5778888877644221111 011 1112221 24677777753 347889998877543321 111
Q ss_pred CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecc
Q 005655 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (685)
Q Consensus 179 ~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~ 254 (685)
..-.++.+ ++.+++.|+.+ ..|.+||+.+..-..+-.. .....+...+.+ ++.+++.|+.
T Consensus 241 --~~v~~v~~~p~~~~l~s~s~D---------~~v~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~l~~g~~ 304 (354)
T 2pbi_B 241 --SDVNSVRYYPSGDAFASGSDD---------ATCRLYDLRADREVAIYSK-----ESIIFGASSVDFSLSGRLLFAGYN 304 (354)
T ss_dssp --SCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC-----TTCCSCEEEEEECTTSSEEEEEET
T ss_pred --CCeEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEcC-----CCcccceeEEEEeCCCCEEEEEEC
Confidence 11222333 56677777753 3578889877643322221 111222222222 6667777776
Q ss_pred cCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
.+. +.+||+.+..
T Consensus 305 d~~----------------i~vwd~~~~~ 317 (354)
T 2pbi_B 305 DYT----------------INVWDVLKGS 317 (354)
T ss_dssp TSC----------------EEEEETTTCS
T ss_pred CCc----------------EEEEECCCCc
Confidence 654 7788875543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=94.23 E-value=1.4 Score=45.60 Aligned_cols=197 Identities=11% Similarity=0.016 Sum_probs=96.0
Q ss_pred EEEEEcCeecCCCceeeeccEEEEEcCCCc-------EEEecCCCCCCCcceeEEEEE-C----C---EEEEEcCccCCC
Q 005655 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQE-------WKVISSPNSPPPRSAHQAVSW-K----N---YLYIFGGEFTSP 147 (685)
Q Consensus 83 ~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~-------W~~l~s~~~P~~R~~ha~v~~-~----~---~iyvfGG~~~s~ 147 (685)
.+++.|+. + +.+.+|++.+.. ...+.... .+ -.+++.. + + .+++.|+..
T Consensus 27 ~~l~s~~~--d-------g~i~iw~~~~~~~~~~~~~~~~~~~h~--~~--v~~~~~~~~~~~~g~~~~~l~s~~~d--- 90 (397)
T 1sq9_A 27 SFTVSCSG--D-------GYLKVWDNKLLDNENPKDKSYSHFVHK--SG--LHHVDVLQAIERDAFELCLVATTSFS--- 90 (397)
T ss_dssp SEEEEEET--T-------SEEEEEESBCCTTCCGGGGEEEEECCT--TC--EEEEEEEEEEETTTEEEEEEEEEETT---
T ss_pred CeEEEEcC--C-------CEEEEEECCCcccccCCCcceEEecCC--Cc--EEEEEEecccccCCccccEEEEEcCC---
Confidence 56777762 2 368889988876 44443211 11 2233333 3 5 777777753
Q ss_pred CCccccccCeEEEEECCCCc------EEEcccCCCCCC---CccceEEEE-----CCEE-EEEccccCCCCceeeeceEE
Q 005655 148 NQERFHHYKDFWMLDLKTNQ------WEQLNLKGCPSP---RSGHRMVLY-----KHKI-IVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~------W~~~~~~g~P~~---Rsgh~~v~~-----~~~l-yv~GG~~~~~~~~~~~~dv~ 212 (685)
..+.+||+.+.. +..+.. .+.. ..-.+++.. ++.+ ++.|+.. ..|.
T Consensus 91 --------g~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------g~i~ 151 (397)
T 1sq9_A 91 --------GDLLFYRITREDETKKVIFEKLDL--LDSDMKKHSFWALKWGASNDRLLSHRLVATDVK---------GTTY 151 (397)
T ss_dssp --------SCEEEEEEEECTTTCCEEEEEECC--SCTTGGGSCEEEEEEECCC----CEEEEEEETT---------SCEE
T ss_pred --------CCEEEEEccCCcccccccceeecc--cccccCCCcEEEEEEeeccCCCCceEEEEEeCC---------CcEE
Confidence 347778877766 666654 2211 112223333 3555 7777653 3567
Q ss_pred EEEcCC------Cc---eE---EeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeC
Q 005655 213 VFDLDQ------FK---WQ---EIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (685)
Q Consensus 213 ~yD~~t------~~---W~---~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (685)
+||+.+ .. |. .+.............-.++... ++ +++.|+..+. +.+||+
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~----------------i~i~d~ 214 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT----------------VQISEL 214 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE----------------EEEEET
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc----------------EEEEEC
Confidence 777655 21 11 1110000000111112233333 55 7777776554 788888
Q ss_pred CCceeEEeecCC--CCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 280 RTWEWSKVKKIG--MPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 280 ~t~~W~~~~~~g--~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
.+..-...-... ..+....-.++++. ++.+++.|+..+ -...|.+||+.+..
T Consensus 215 ~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-----------~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 215 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-----------SFGCITLYETEFGE 269 (397)
T ss_dssp TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-----------TEEEEEEEETTTCC
T ss_pred CCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC-----------CCceEEEEECCCCc
Confidence 776544332210 00001122333333 567777777541 01359999988764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=94.15 E-value=4.1 Score=41.92 Aligned_cols=69 Identities=9% Similarity=0.020 Sum_probs=36.5
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC-C-CCCccceEEEE--CCEEEEEccccCCCCceeeec
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-P-SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYN 209 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P-~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~ 209 (685)
++ +++.|+.. ..+.+||+.+......-.... . .....-.++.+ ++.+++.|+..+. ..
T Consensus 197 ~~-~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~------~g 258 (397)
T 1sq9_A 197 RG-LIATGFNN-----------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS------FG 258 (397)
T ss_dssp TS-EEEEECTT-----------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT------EE
T ss_pred Cc-eEEEEeCC-----------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC------Cc
Confidence 35 66666642 458899998775433222000 1 00122223333 5666777764310 25
Q ss_pred eEEEEEcCCCc
Q 005655 210 DLYVFDLDQFK 220 (685)
Q Consensus 210 dv~~yD~~t~~ 220 (685)
.|.+||+.+.+
T Consensus 259 ~i~i~d~~~~~ 269 (397)
T 1sq9_A 259 CITLYETEFGE 269 (397)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCc
Confidence 78999988764
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.05 E-value=1.6 Score=50.57 Aligned_cols=111 Identities=11% Similarity=0.080 Sum_probs=65.2
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~ 159 (685)
++.|+|+||. .+-|++||+.++++..+.....+......+++.- ++.||+-. . +-+.
T Consensus 482 ~g~lWi~~~t---------~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~------------~Gl~ 539 (758)
T 3ott_A 482 EGNVWVLLYN---------NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-H------------GGVM 539 (758)
T ss_dssp TSCEEEEETT---------CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-T------------TEEE
T ss_pred CCCEEEEccC---------CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-c------------CceE
Confidence 5788887662 1358999999999998753221111112222222 47788642 1 3588
Q ss_pred EEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
+||+.++.+..+...++|.. .-++++.-++.|++-+. +-+.+||+.+.+.....
T Consensus 540 ~~~~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t~-----------~Gl~~~~~~~~~~~~~~ 593 (758)
T 3ott_A 540 RINPKDESQQSISFGSFSNN-EILSMTCVKNSIWVSTT-----------NGLWIIDRKTMDARQQN 593 (758)
T ss_dssp EECC--CCCCBCCCCC---C-CEEEEEEETTEEEEEES-----------SCEEEEETTTCCEEEC-
T ss_pred EEecCCCceEEecccCCCcc-ceEEEEECCCCEEEECC-----------CCeEEEcCCCceeEEec
Confidence 99999888876654344532 23344445788887542 45899999988876543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=94.04 E-value=0.74 Score=46.52 Aligned_cols=143 Identities=10% Similarity=0.037 Sum_probs=70.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~ 149 (685)
.++.+.| ++.+++.|+. + ..+.+||..+..-. .+.... .+ -.+++.. ++.+++.|+..
T Consensus 17 ~~~~fsp--~~~~l~s~~~--d-------g~v~lWd~~~~~~~~~~~~~~--~~--v~~~~~~~~~~~l~s~s~d----- 76 (304)
T 2ynn_A 17 KGIDFHP--TEPWVLTTLY--S-------GRVELWNYETQVEVRSIQVTE--TP--VRAGKFIARKNWIIVGSDD----- 76 (304)
T ss_dssp EEEEECS--SSSEEEEEET--T-------SEEEEEETTTTEEEEEEECCS--SC--EEEEEEEGGGTEEEEEETT-----
T ss_pred EEEEECC--CCCEEEEEcC--C-------CcEEEEECCCCceeEEeeccC--Cc--EEEEEEeCCCCEEEEECCC-----
Confidence 3455666 5677777772 2 35788898887543 222211 11 1222233 45566666642
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
..+.+||+.++.-...-. +.+ ..-.+++.. ++.+++.|+.+ ..|.+||+.+.. .......
T Consensus 77 ------~~i~vwd~~~~~~~~~~~-~h~--~~v~~~~~~~~~~~l~sgs~D---------~~v~lWd~~~~~-~~~~~~~ 137 (304)
T 2ynn_A 77 ------FRIRVFNYNTGEKVVDFE-AHP--DYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENNW-ALEQTFE 137 (304)
T ss_dssp ------SEEEEEETTTCCEEEEEE-CCS--SCEEEEEECSSSSEEEEEETT---------SCEEEEEGGGTT-EEEEEEC
T ss_pred ------CEEEEEECCCCcEEEEEe-CCC--CcEEEEEEcCCCCEEEEECCC---------CeEEEEECCCCc-chhhhhc
Confidence 357888988775332111 011 111122222 45666677653 357788876542 2221111
Q ss_pred CCCCCCCccceeEEEe--CCEEEEEecccCC
Q 005655 229 GSMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~ 257 (685)
.....-.+++.. ++.+++.|+.++.
T Consensus 138 ----~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 138 ----GHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp ----CCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred ----ccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 011111222222 4567888887765
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.03 E-value=1.9 Score=44.06 Aligned_cols=158 Identities=9% Similarity=0.116 Sum_probs=78.3
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCC--CcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeec
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYN 209 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t--~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~ 209 (685)
++.+++.|+.+ ..+.+||+.. ..+..+.. +......-..+.+ ++.+++.||.+ .
T Consensus 118 ~g~~las~s~D-----------~~v~iwd~~~~~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~D---------~ 175 (330)
T 2hes_X 118 DGYYLATCSRD-----------KSVWIWETDESGEEYECISV--LQEHSQDVKHVIWHPSEALLASSSYD---------D 175 (330)
T ss_dssp TSCEEEEEETT-----------SCEEEEECCTTCCCCEEEEE--ECCCSSCEEEEEECSSSSEEEEEETT---------S
T ss_pred CCCEEEEEeCC-----------CEEEEEeccCCCCCeEEEEE--eccCCCceEEEEECCCCCEEEEEcCC---------C
Confidence 46667777653 3477788743 34444332 1111111223333 45677777754 3
Q ss_pred eEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-C--CEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC------
Q 005655 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-Q--DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------ 280 (685)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~--~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------ 280 (685)
.|.+||+.+..|..+...... ..+. .++... + +.+++.|+.++. +.++|+.
T Consensus 176 ~i~iW~~~~~~~~~~~~~~~h--~~~v--~~~~~~~~~~~~~l~s~s~D~~----------------v~iw~~~~~~~~~ 235 (330)
T 2hes_X 176 TVRIWKDYDDDWECVAVLNGH--EGTV--WSSDFDKTEGVFRLCSGSDDST----------------VRVWKYMGDDEDD 235 (330)
T ss_dssp CEEEEEEETTEEEEEEEECCC--SSCE--EEEEECCSSSSCEEEEEETTSC----------------EEEEEEEEECTTS
T ss_pred eEEEEECCCCCeeEEEEccCC--CCcE--EEEEecCCCCeeEEEEEeCCCe----------------EEEEEecCCCccc
Confidence 567777777767665544211 1111 122222 2 345667776654 3333332
Q ss_pred CceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 281 TWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 281 t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
...|..+..... .....-.+++...+.+++.||.. ..|.+||+.+..|..+..
T Consensus 236 ~~~~~~~~~~~~-~h~~~v~~v~~s~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~ 288 (330)
T 2hes_X 236 QQEWVCEAILPD-VHKRQVYNVAWGFNGLIASVGAD--------------GVLAVYEEVDGEWKVFAK 288 (330)
T ss_dssp CEEEEEEEECCS-CCSSCEEEEEECTTSCEEEEETT--------------SCEEEEEEETTEEEEEEE
T ss_pred cceeEEeeeccc-ccccceEEEEEcCCCEEEEEeCC--------------CEEEEEEcCCCceEEEec
Confidence 234555443211 01222334444455566666643 348889988888866543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=94.02 E-value=2.2 Score=42.95 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=58.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCc----EEEecCCCCCCCcceeEEEEE-CCE-EEEEcCccC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE----WKVISSPNSPPPRSAHQAVSW-KNY-LYIFGGEFT 145 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~----W~~l~s~~~P~~R~~ha~v~~-~~~-iyvfGG~~~ 145 (685)
.++...| ++.+++.|+. + +.+.+|++.+.. ...+.. ....-.+++.. ++. +++.|+..
T Consensus 15 ~~~~~s~--~~~~l~~~~~--d-------~~v~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d- 78 (342)
T 1yfq_A 15 SDIKIIP--SKSLLLITSW--D-------GSLTVYKFDIQAKNVDLLQSLR----YKHPLLCCNFIDNTDLQIYVGTVQ- 78 (342)
T ss_dssp EEEEEEG--GGTEEEEEET--T-------SEEEEEEEETTTTEEEEEEEEE----CSSCEEEEEEEESSSEEEEEEETT-
T ss_pred EEEEEcC--CCCEEEEEcC--C-------CeEEEEEeCCCCccccceeeee----cCCceEEEEECCCCCcEEEEEcCC-
Confidence 4455565 4566677762 2 357788877765 333321 11222333333 566 66777643
Q ss_pred CCCCccccccCeEEEEEC-CCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 146 SPNQERFHHYKDFWMLDL-KTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 146 s~~~~~~~~~~dv~~yD~-~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
..+.+||+ .+.....+... +....-.+++...+.+++.|+.. ..+.+||+.+
T Consensus 79 ----------g~i~~wd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~l~s~~~d---------~~i~iwd~~~ 131 (342)
T 1yfq_A 79 ----------GEILKVDLIGSPSFQALTNN--EANLGICRICKYGDDKLIAASWD---------GLIEVIDPRN 131 (342)
T ss_dssp ----------SCEEEECSSSSSSEEECBSC--CCCSCEEEEEEETTTEEEEEETT---------SEEEEECHHH
T ss_pred ----------CeEEEEEeccCCceEecccc--CCCCceEEEEeCCCCEEEEEcCC---------CeEEEEcccc
Confidence 35888999 88876555431 11111222333335566666643 3577777654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=6.6 Score=44.82 Aligned_cols=149 Identities=13% Similarity=0.029 Sum_probs=81.1
Q ss_pred cCeEEEEECCC------C--cEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC---ceEE
Q 005655 155 YKDFWMLDLKT------N--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---KWQE 223 (685)
Q Consensus 155 ~~dv~~yD~~t------~--~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~---~W~~ 223 (685)
.+.+|++|+.+ . .+..+... .... .......++.||+.+.... ....|+++|+.+. .|..
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~--~~~~-~~~~s~dg~~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDN--FEGE-YDYVTNEGTVFTFKTNRHS------PNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECS--SSSC-EEEEEEETTEEEEEECTTC------TTCEEEEEETTSCCGGGCEE
T ss_pred ccEEEEEECcccccccCCccceEEeeCC--CCcE-EEEEeccCCEEEEEECCCC------CCCEEEEEeCCCCCccccee
Confidence 36899999976 4 58777651 1111 1122233678888765422 1357999999875 5888
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce-eEEeecCCCCCCCcceeE
Q 005655 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVKKIGMPPGPRAGFS 301 (685)
Q Consensus 224 v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~~~~~g~~P~~R~g~s 301 (685)
+... .....-..++.. ++.|++...... ...++++++.+.. ...+.. | .+..
T Consensus 329 l~~~-----~~~~~~~~~~~~~~~~lv~~~~~~g--------------~~~l~~~~~~~g~~~~~l~~----~---~~~v 382 (710)
T 2xdw_A 329 LVPE-----HEKDVLEWVACVRSNFLVLCYLHDV--------------KNTLQLHDLATGALLKIFPL----E---VGSV 382 (710)
T ss_dssp EECC-----CSSCEEEEEEEETTTEEEEEEEETT--------------EEEEEEEETTTCCEEEEECC----C---SSEE
T ss_pred ccCC-----CCCCeEEEEEEEcCCEEEEEEEECC--------------EEEEEEEECCCCCEEEecCC----C---CceE
Confidence 7654 111122234444 777777665432 2458899985443 444431 2 1221
Q ss_pred E-EEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCc--EEEEEe
Q 005655 302 M-CVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WYPLEL 348 (685)
Q Consensus 302 ~-~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~--W~~l~~ 348 (685)
. +.. ++..++|..... ..-..+|.||+.++. +..+..
T Consensus 383 ~~~~~s~d~~~l~~~~ss~----------~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 383 VGYSGQKKDTEIFYQFTSF----------LSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp EEEECCTTCSEEEEEEECS----------SCCCEEEEEETTSSSCCCEEEEE
T ss_pred EEEecCCCCCEEEEEEeCC----------CCCCEEEEEECCCCccceEEeee
Confidence 1 222 333333332211 124579999998877 665554
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=93.88 E-value=1.6 Score=46.27 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=55.3
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
+.|+++|..+++...+-... .....-.++.+ ++.+++.|+.+ ..+.+||+.++.-..... ...
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~--~~~~~V~sv~fspdg~~lasgs~D-----------g~v~iWd~~~~~~~~~~~--~h~ 189 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEGNYLAVGTSS-----------AEVQLWDVQQQKRLRNMT--SHS 189 (420)
T ss_dssp TEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS
T ss_pred CEEEEEECCCCCEEEEEEec--CCCCcEEEEEECCCCCEEEEEECC-----------CeEEEEEcCCCcEEEEEe--CCC
Confidence 46999999998876543322 11112233333 46777777753 348889998876433222 122
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
. ...++.+++.+++.|+.. ..+..+|......
T Consensus 190 ~--~v~~~s~~~~~l~sgs~d---------~~i~~~d~~~~~~ 221 (420)
T 4gga_A 190 A--RVGSLSWNSYILSSGSRS---------GHIHHHDVRVAEH 221 (420)
T ss_dssp S--CEEEEEEETTEEEEEETT---------SEEEEEETTSSSC
T ss_pred C--ceEEEeeCCCEEEEEeCC---------CceeEeeecccce
Confidence 2 233455677777777753 3567777765443
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=93.85 E-value=1.4 Score=50.34 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=70.0
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCC----------------c----ce
Q 005655 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP----------------R----SA 127 (685)
Q Consensus 68 ~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~----------------R----~~ 127 (685)
.+.-.++...| +++.+++++.. ++.. ....++++|+.+++...+.......+ | ..
T Consensus 36 ~~~~~~~~~Sp--dG~~la~~~~~-d~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAP--DGSRVTFLRGK-DSDR--NQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCCCEEEEECT--TSSEEEEEECC-SSCT--TEEEEEEEETTTCCEEEEECGGGTC--------------------CCEE
T ss_pred CCCCCCceEec--CCCEEEEEecc-CCCC--cccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccC
Confidence 33445566666 66666666531 2211 13479999999998887654321110 0 01
Q ss_pred eEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCC---cEEEcccCCCCCCCccceEEEE--CCEEEEEccccC
Q 005655 128 HQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN---QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYD 200 (685)
Q Consensus 128 ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~---~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~ 200 (685)
...+.+ +++.+++++. ..+|++|+.++ .-..+.. ... ....+.+ +++.++|+..
T Consensus 111 v~~~~~SpDg~~l~~~~~------------~~i~~~d~~~~~~~~~~~l~~---~~~--~~~~~~~SPDG~~la~~~~-- 171 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG------------GELYLYDLKQEGKAAVRQLTH---GEG--FATDAKLSPKGGFVSFIRG-- 171 (741)
T ss_dssp SCCCEECTTSSEEEEEET------------TEEEEEESSSCSTTSCCBCCC---SSS--CEEEEEECTTSSEEEEEET--
T ss_pred cceeEECCCCCEEEEEeC------------CcEEEEECCCCCcceEEEccc---CCc--ccccccCCCCCCEEEEEeC--
Confidence 112222 4555555442 57999999887 5443332 111 1223333 5655555531
Q ss_pred CCCceeeeceEEEEEcCCCceEEeccC
Q 005655 201 TLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
+.|+++|+.+.....+...
T Consensus 172 --------~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 172 --------RNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp --------TEEEEEETTTTEEEECCCC
T ss_pred --------CcEEEEecCCCCEEEeccC
Confidence 3799999998877766543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=93.80 E-value=2.5 Score=42.42 Aligned_cols=154 Identities=8% Similarity=0.004 Sum_probs=72.5
Q ss_pred ccEEEEEcCCCcEEEecCCCC--CCCcceeEEEEECCEEEEEcCccCCCCC-ccccccCeEEEEECCCCcEEEcccCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNS--PPPRSAHQAVSWKNYLYIFGGEFTSPNQ-ERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~--P~~R~~ha~v~~~~~iyvfGG~~~s~~~-~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (685)
+.|++||+.+++++.+..... |..|....++.-++.||+.. ....... ........+|+|++. .....+... ..
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~-~~ 149 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPD-HHVKKYFDQ-VD 149 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTT-SCEEEEEEE-ES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECC-CCEEEEeec-cc
Confidence 368999999998887654321 22222222222257777642 1111000 000123468899875 343333221 11
Q ss_pred CCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEc--CCCceEEeccCCCCCCCC-CccceeEEEe-CCEEEEE
Q 005655 178 SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGSMWPS-PRSGFQFFVY-QDEVFLY 251 (685)
Q Consensus 178 ~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~~~P~-~Rs~~s~~~~-~~~Iyv~ 251 (685)
.-.+++.. ++.||+.... .+.|++|++ .+.......... ..+. ...-.++++. ++.||+.
T Consensus 150 ---~pngi~~spdg~~lyv~~~~---------~~~i~~~~~d~~~G~~~~~~~~~--~~~~~~~~p~g~~~d~~G~lwva 215 (297)
T 3g4e_A 150 ---ISNGLDWSLDHKIFYYIDSL---------SYSVDAFDYDLQTGQISNRRSVY--KLEKEEQIPDGMCIDAEGKLWVA 215 (297)
T ss_dssp ---BEEEEEECTTSCEEEEEEGG---------GTEEEEEEECTTTCCEEEEEEEE--ECCGGGCEEEEEEEBTTSCEEEE
T ss_pred ---cccceEEcCCCCEEEEecCC---------CCcEEEEeccCCCCcccCcEEEE--ECCCCCCCCCeeEECCCCCEEEE
Confidence 11233333 3468877543 356888876 454432211100 0010 1111234443 6678776
Q ss_pred ecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
..... .+++||+.+.+....
T Consensus 216 ~~~~~----------------~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 216 CYNGG----------------RVIRLDPVTGKRLQT 235 (297)
T ss_dssp EETTT----------------EEEEECTTTCCEEEE
T ss_pred EcCCC----------------EEEEEcCCCceEEEE
Confidence 53322 288999986654443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=93.78 E-value=3.4 Score=41.57 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=40.8
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.+|+.++. -+.|+++|+.+++....... +.....+.+++. + ..+|+.+.. ...+
T Consensus 10 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~~-----------~~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNY---------PNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNH-----------YGDI 67 (349)
T ss_dssp TCEEEEEEET---------TTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETT-----------TTEE
T ss_pred CCEEEEEeCC---------CCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeCC-----------CCcE
Confidence 5778887762 24789999998876533221 110012334443 3 467877642 2569
Q ss_pred EEEECCCCcEEE
Q 005655 159 WMLDLKTNQWEQ 170 (685)
Q Consensus 159 ~~yD~~t~~W~~ 170 (685)
++||+.++....
T Consensus 68 ~~~d~~t~~~~~ 79 (349)
T 1jmx_B 68 YGIDLDTCKNTF 79 (349)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 999999887553
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=93.78 E-value=1.6 Score=42.39 Aligned_cols=151 Identities=16% Similarity=0.266 Sum_probs=80.7
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEE--ccc--CCCCCCCccceEEEE--CCEEEEEccccCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQ--LNL--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~--~~~--~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~ 202 (685)
|++...+.+|+|=| +.+|+++.....+.. +.. .++|. ... ++... ++.||+|-|
T Consensus 28 Ai~~~~g~~y~Fkg-------------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG----- 87 (207)
T 1pex_A 28 AITSLRGETMIFKD-------------RFFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG----- 87 (207)
T ss_dssp EEEEETTEEEEEET-------------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET-----
T ss_pred EEEeCCCcEEEEEC-------------CEEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc-----
Confidence 45556899999977 458888875544432 211 22342 222 33333 589999987
Q ss_pred CceeeeceEEEEEcCCCce---EEeccCCCCCCCCCccceeEEE-e--CCEEEEEecccCCCCcccCCCCCCceeeeEEE
Q 005655 203 REVRYYNDLYVFDLDQFKW---QEIKPRFGSMWPSPRSGFQFFV-Y--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (685)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~W---~~v~~~~~~~~P~~Rs~~s~~~-~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (685)
+.+|+|+-.+-.- ..|... .+|.....--+++ . ++++|+|-|. ..|+
T Consensus 88 ------~~~w~~~~~~~~~gyPk~I~~~---GlP~~~~~IDAA~~~~~~gk~yfFkG~------------------~ywr 140 (207)
T 1pex_A 88 ------RKFWALNGYDILEGYPKKISEL---GLPKEVKKISAAVHFEDTGKTLLFSGN------------------QVWR 140 (207)
T ss_dssp ------TEEEEESTTCCCTTCSEESTTT---TCCTTCCCCCEEEECTTTSEEEEEETT------------------EEEE
T ss_pred ------CEEEEEeCCeeccCCceecccc---CCCCCCccccEEEEeCCCCEEEEEeCC------------------EEEE
Confidence 3567776332111 112111 1232111222232 2 5899999763 3789
Q ss_pred EeCCCceeEE-----eec--CCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 277 LDPRTWEWSK-----VKK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 277 yd~~t~~W~~-----~~~--~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
||..+.+-.. +.. .|. |. +. .++...++.+|+|-|. ..|.||..+++=..
T Consensus 141 ~d~~~~~~d~gyPr~i~~~~~Gi-p~-~i-DaAf~~~g~~YfFkg~----------------~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 141 YDDTNHIMDKDYPRLIEEDFPGI-GD-KV-DAVYEKNGYIYFFNGP----------------IQFEYSIWSNRIVR 197 (207)
T ss_dssp EETTTTEECSSCCCBHHHHSTTS-CS-CC-SEEEEETTEEEEEETT----------------EEEEEETTTTEEEE
T ss_pred EeCcCccccCCCCccHHHcCCCC-CC-Cc-cEEEEcCCcEEEEECC----------------EEEEEeCCccEEec
Confidence 9976543110 000 111 21 12 2333468999999774 38899987765443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.77 E-value=1.1 Score=46.22 Aligned_cols=110 Identities=8% Similarity=-0.066 Sum_probs=52.3
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~ 268 (685)
++..++.|+.+ ..+.+||+.+..-.................+......+..+++++..+
T Consensus 256 ~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 314 (408)
T 4a11_B 256 DGLHLLTVGTD---------NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS------------ 314 (408)
T ss_dssp TSSEEEEEETT---------SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT------------
T ss_pred CCCEEEEecCC---------CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC------------
Confidence 45566666643 358899988765332221110000111111122222334444554433
Q ss_pred ceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
.+.+||..+..-...-. .....-.++++. ++.+++.||.. ..|.+||+.+.
T Consensus 315 ----~i~v~d~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d--------------g~i~iw~~~~~ 366 (408)
T 4a11_B 315 ----TIAVYTVYSGEQITMLK----GHYKTVDCCVFQSNFQELYSGSRD--------------CNILAWVPSLY 366 (408)
T ss_dssp ----EEEEEETTTCCEEEEEC----CCSSCEEEEEEETTTTEEEEEETT--------------SCEEEEEECC-
T ss_pred ----EEEEEECcCCcceeeec----cCCCeEEEEEEcCCCCEEEEECCC--------------CeEEEEeCCCC
Confidence 37788876654333221 111112334444 56777777753 34888888764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.91 Score=48.49 Aligned_cols=93 Identities=11% Similarity=0.104 Sum_probs=46.7
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.|.+||+.++....+..... ......++... ++.+++.|+.. ..+.+||+.+..-..+.. -.
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d-----------g~i~~wd~~~~~~~~~~~-----h~ 250 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDT-INIWFCSLDVSASSRMVVTGDNV-----------GNVILLNMDGKELWNLRM-----HK 250 (435)
T ss_dssp CEEEEETTSCEEEEEECCSS-CSCCCCCEEEETTTTEEEEECSS-----------SBEEEEESSSCBCCCSBC-----CS
T ss_pred EEEEeeccCCceeEEeccCC-CCccEEEEEECCCCCEEEEEeCC-----------CcEeeeccCcceeEEEec-----cc
Confidence 36677877776665544321 11112233333 56677777753 347788876543211111 11
Q ss_pred ccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 181 SGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 181 sgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
..-.++.+ +..+++.|+.+ ..|.+||+.+..
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d---------~~v~iwd~~~~~ 284 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVD---------QTVKIWDLRQVR 284 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETT---------SBCCEEETTTCC
T ss_pred ceEEeeeecCCCceEEEEecCc---------ceeeEEeccccc
Confidence 11122333 34567777753 346678876543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=93.73 E-value=2.4 Score=44.84 Aligned_cols=65 Identities=14% Similarity=0.018 Sum_probs=35.8
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (685)
++..++.||.. ..+.+||+.++.....-. .......++.+ ++.+++.|+.+ ..|
T Consensus 203 ~~~~l~s~s~D-----------~~i~~wd~~~~~~~~~~~----~h~~~v~~~~~~~~g~~l~s~s~D---------~~v 258 (410)
T 1vyh_C 203 NGDHIVSASRD-----------KTIKMWEVQTGYCVKTFT----GHREWVRMVRPNQDGTLIASCSND---------QTV 258 (410)
T ss_dssp SSSEEEEEETT-----------SEEEEEETTTCCEEEEEE----CCSSCEEEEEECTTSSEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEe----CCCccEEEEEECCCCCEEEEEcCC---------CeE
Confidence 45566677643 457889988776432211 11111222333 56677777753 357
Q ss_pred EEEEcCCCceE
Q 005655 212 YVFDLDQFKWQ 222 (685)
Q Consensus 212 ~~yD~~t~~W~ 222 (685)
.+||+.+....
T Consensus 259 ~vwd~~~~~~~ 269 (410)
T 1vyh_C 259 RVWVVATKECK 269 (410)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcee
Confidence 77887766543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.70 E-value=1.4 Score=44.60 Aligned_cols=187 Identities=13% Similarity=0.094 Sum_probs=90.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC----CEEEEEcCccCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK----NYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~----~~iyvfGG~~~s~ 147 (685)
.++...|. +..|++.|+.. .+ -+.+.+||+.++....+.... ....-.+++... +.+++.|+..
T Consensus 22 ~~~~~~p~-~~~l~~~~s~~-~~-----d~~v~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~d--- 89 (357)
T 3i2n_A 22 FDCKWVPC-SAKFVTMGNFA-RG-----TGVIQLYEIQHGDLKLLREIE--KAKPIKCGTFGATSLQQRYLATGDFG--- 89 (357)
T ss_dssp EEEEECTT-SSEEEEEEC---CC-----CEEEEEEEECSSSEEEEEEEE--ESSCEEEEECTTCCTTTCCEEEEETT---
T ss_pred EEEEEcCC-CceEEEecCcc-CC-----CcEEEEEeCCCCcccceeeec--ccCcEEEEEEcCCCCCCceEEEecCC---
Confidence 34556652 34677777520 01 136888999888765442211 111112222222 3677777643
Q ss_pred CCccccccCeEEEEECCCCc--EEEcccCCCCCCCccceEEE-------ECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 148 NQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVL-------YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~-------~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
..+.+||+.+.. -..+.. ...+ -.++.. -++.+++.|+.+ ..+.+||+.+
T Consensus 90 --------g~i~iwd~~~~~~~~~~~~~--~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d---------~~i~vwd~~~ 148 (357)
T 3i2n_A 90 --------GNLHIWNLEAPEMPVYSVKG--HKEI--INAIDGIGGLGIGEGAPEIVTGSRD---------GTVKVWDPRQ 148 (357)
T ss_dssp --------SCEEEECTTSCSSCSEEECC--CSSC--EEEEEEESGGGCC-CCCEEEEEETT---------SCEEEECTTS
T ss_pred --------CeEEEEeCCCCCccEEEEEe--cccc--eEEEeeccccccCCCccEEEEEeCC---------CeEEEEeCCC
Confidence 347788887664 222211 1111 111111 145566666643 3688888887
Q ss_pred Cc--eEEeccCCCCCCCCCccceeEE----E-eCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC
Q 005655 219 FK--WQEIKPRFGSMWPSPRSGFQFF----V-YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (685)
Q Consensus 219 ~~--W~~v~~~~~~~~P~~Rs~~s~~----~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g 291 (685)
.. ...+..... ...+.-.+++ . .++.+++.|+..+. +.+||+.+..-......
T Consensus 149 ~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~- 208 (357)
T 3i2n_A 149 KDDPVANMEPVQG---ENKRDCWTVAFGNAYNQEERVVCAGYDNGD----------------IKLFDLRNMALRWETNI- 208 (357)
T ss_dssp CSSCSEEECCCTT---SCCCCEEEEEEECCCC-CCCEEEEEETTSE----------------EEEEETTTTEEEEEEEC-
T ss_pred CCCcceeccccCC---CCCCceEEEEEEeccCCCCCEEEEEccCCe----------------EEEEECccCceeeecCC-
Confidence 54 344433211 1111222222 1 26667777766544 77888877654333221
Q ss_pred CCCCCcceeEEEEE----CCeEEEecce
Q 005655 292 MPPGPRAGFSMCVH----KKRALLFGGV 315 (685)
Q Consensus 292 ~~P~~R~g~s~~~~----~~~iyvfGG~ 315 (685)
...-.++++. ++..++.|+.
T Consensus 209 ----~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 209 ----KNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp ----SSCEEEEEESCSSSSCCEEEEEES
T ss_pred ----CCceEEEEcCCCCCCCCEEEEECC
Confidence 1222344444 4566666654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.76 Score=52.63 Aligned_cols=174 Identities=15% Similarity=0.164 Sum_probs=88.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC---cEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ---EWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~---~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
.++...| +++.++|++. ..++++|+.++ ....+.... ..-..++.. +++.++|+..
T Consensus 112 ~~~~~Sp--Dg~~l~~~~~----------~~i~~~d~~~~~~~~~~~l~~~~----~~~~~~~~SPDG~~la~~~~---- 171 (741)
T 2ecf_A 112 VDYQWSP--DAQRLLFPLG----------GELYLYDLKQEGKAAVRQLTHGE----GFATDAKLSPKGGFVSFIRG---- 171 (741)
T ss_dssp CCCEECT--TSSEEEEEET----------TEEEEEESSSCSTTSCCBCCCSS----SCEEEEEECTTSSEEEEEET----
T ss_pred ceeEECC--CCCEEEEEeC----------CcEEEEECCCCCcceEEEcccCC----cccccccCCCCCCEEEEEeC----
Confidence 3445566 5666666652 57999999887 554443321 111222222 4555555431
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCcc------------ceEEEE--CCEEEEEccccCCCCc---------
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG------------HRMVLY--KHKIIVFGGFYDTLRE--------- 204 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsg------------h~~v~~--~~~lyv~GG~~~~~~~--------- 204 (685)
+.++++|+.++....+...+...-..+ ...+.| +++.++++........
T Consensus 172 --------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p 243 (741)
T 2ecf_A 172 --------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYA 243 (741)
T ss_dssp --------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECS
T ss_pred --------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCC
Confidence 369999999988877755221100000 122334 4554555443321100
Q ss_pred ---------------eeeeceEEEEEcCC-CceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCC
Q 005655 205 ---------------VRYYNDLYVFDLDQ-FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268 (685)
Q Consensus 205 ---------------~~~~~dv~~yD~~t-~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~ 268 (685)
......|+++|+.+ .+-..+..... ........+. ..+..|++......
T Consensus 244 ~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~-pDg~~l~~~~~~~~------------ 308 (741)
T 2ecf_A 244 DRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKE--QDIYLARVNW-RDPQHLSFQRQSRD------------ 308 (741)
T ss_dssp SCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSC--SSEEEEEEEE-EETTEEEEEEEETT------------
T ss_pred CcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCC--cceEEEEEEe-CCCCEEEEEEeccc------------
Confidence 00123789999988 77655543200 0111122233 33455555443221
Q ss_pred ceeeeEEEEeCCCceeEEee
Q 005655 269 IIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~~~ 288 (685)
.....++++|+.+.....+.
T Consensus 309 ~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 309 QKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp SSEEEEEEEETTTCCEEEEE
T ss_pred CCeEEEEEEECCCCceEEEE
Confidence 12457999999888776654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=93.52 E-value=9.1 Score=40.68 Aligned_cols=208 Identities=10% Similarity=0.055 Sum_probs=109.9
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
+.+++.+ ++.||+.... -+.+++||+.++.-..+.... ...+ +++. ++.||+......
T Consensus 134 ~~la~d~--~g~lyv~d~~---------~~~I~~id~~~g~~~~~~~~~----~~~~-ia~~~~g~~l~~~d~~~~---- 193 (409)
T 3hrp_A 134 WGIAAVG--NNTVLAYQRD---------DPRVRLISVDDNKVTTVHPGF----KGGK-PAVTKDKQRVYSIGWEGT---- 193 (409)
T ss_dssp EEEEECS--TTEEEEEETT---------TTEEEEEETTTTEEEEEEETC----CBCB-CEECTTSSEEEEEBSSTT----
T ss_pred eEEEEeC--CCCEEEEecC---------CCcEEEEECCCCEEEEeeccC----CCCc-eeEecCCCcEEEEecCCC----
Confidence 4555555 6788888751 146899999988776554321 1223 3333 356777654211
Q ss_pred ccccccCeEEEEECCCCc-EEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 150 ERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
..+++|++.+.. ...+.....+....-+++++. ++.||+..+ ...|++||+.+.....+..
T Consensus 194 ------~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~----------~~~I~~~d~~~~~~~~~~~ 257 (409)
T 3hrp_A 194 ------HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS----------NKNFGRFNVKTQEVTLIKQ 257 (409)
T ss_dssp ------CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT----------TCEEEEEETTTCCEEEEEE
T ss_pred ------ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC----------CCcEEEEECCCCCEEEEec
Confidence 268999987553 233311101012222334444 578998322 2469999998877655522
Q ss_pred CCC--CCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC-------
Q 005655 227 RFG--SMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG------- 295 (685)
Q Consensus 227 ~~~--~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~------- 295 (685)
... .....|+. .+++. ++.||+..... +.+++|++.... ..+...+..+.
T Consensus 258 ~~~~g~~~~~P~~--~ia~~p~~g~lyv~d~~~----------------~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~ 318 (409)
T 3hrp_A 258 LELSGSLGTNPGP--YLIYYFVDSNFYMSDQNL----------------SSVYKITPDGEC-EWFCGSATQKTVQDGLRE 318 (409)
T ss_dssp CCCCSCCCCSSCC--EEEEETTTTEEEEEETTT----------------TEEEEECTTCCE-EEEEECTTCCSCBCEEGG
T ss_pred ccccCCCCCCccc--cEEEeCCCCEEEEEeCCC----------------CEEEEEecCCCE-EEEEeCCCCCCcCCCccc
Confidence 210 00011121 44444 68899875433 238888876552 22221110000
Q ss_pred -C--cceeEEEEE-CCeEEEecc-eecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 296 -P--RAGFSMCVH-KKRALLFGG-VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 296 -~--R~g~s~~~~-~~~iyvfGG-~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
. ..-.++++. ++.||+... . .+.|.+|++.+.....+..
T Consensus 319 ~~~~~~P~gia~d~dG~lyvad~~~--------------~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 319 EALFAQPNGMTVDEDGNFYIVDGFK--------------GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp GCBCSSEEEEEECTTCCEEEEETTT--------------TCEEEEEETTTTEEEEEEE
T ss_pred ccEeCCCeEEEEeCCCCEEEEeCCC--------------CCEEEEEECCCCEEEEEeC
Confidence 0 112344444 567888753 2 2459999977777665554
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.99 Score=45.37 Aligned_cols=113 Identities=7% Similarity=0.085 Sum_probs=56.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC---CEEEEEcCccCCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK---NYLYIFGGEFTSPNQ 149 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~---~~iyvfGG~~~s~~~ 149 (685)
++++.| ++.+++.||. + +.+.+||+.......+..... ....-.+++... +.+++.|+.+
T Consensus 14 ~~~~s~--~g~~las~s~--D-------~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~s~D----- 76 (297)
T 2pm7_B 14 DAVMDY--YGKRMATCSS--D-------KTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYD----- 76 (297)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEETT-----
T ss_pred EEEECC--CCCEEEEEeC--C-------CEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEEEcCC-----
Confidence 344555 5777777773 2 357788876543221111100 011112222221 5677777753
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEEC----CEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK----HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~----~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
..+.++|+.++.|..+... ......-.++.+. +.+++.|+.+ ..|.+||+.+.
T Consensus 77 ------~~v~iWd~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~g~~l~s~s~d---------~~v~~wd~~~~ 133 (297)
T 2pm7_B 77 ------GKVMIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPMLLVASSD---------GKVSVVEFKEN 133 (297)
T ss_dssp ------TEEEEEEBSSSCBCCCEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEEBCSS
T ss_pred ------CEEEEEEcCCCceEEEEEe--ecCCCceeEEEeCcCCCCcEEEEEECC---------CcEEEEEecCC
Confidence 3577889888777554331 1111122333442 4566677653 35677777654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=93.49 E-value=2.1 Score=47.10 Aligned_cols=197 Identities=7% Similarity=-0.011 Sum_probs=93.6
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC----c-EEEecCCCCCCCcc-eeEEEEE---CCEEEEEc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ----E-WKVISSPNSPPPRS-AHQAVSW---KNYLYIFG 141 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~----~-W~~l~s~~~P~~R~-~ha~v~~---~~~iyvfG 141 (685)
-.++.+.| ++.++++|+ + +.+.+||+.+. . -..+... ... -.+++.. ++.+++.|
T Consensus 21 v~~~~~sp--dg~~l~~~~---~-------~~v~v~~~~~~~~~~~~~~~~~~h----~~~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 21 TTHLSYDP--TTNAIAYPC---G-------KSAFVRCLDDGDSKVPPVVQFTGH----GSSVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp CCCCEEET--TTTEEEEEE---T-------TEEEEEECCSSCCSSCSEEEECTT----TTSCEEEEEECSSTTCCEEEEE
T ss_pred eeEEEECC--CCCEEEEec---C-------CeEEEEECCCCCCccccceEEecC----CCceEEEEEECcCCCCCEEEEe
Confidence 34566666 567777776 1 25888998866 3 3333221 111 1223332 45677777
Q ss_pred CccCCCCCccccccCeEEEEECCCC------cEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEE
Q 005655 142 GEFTSPNQERFHHYKDFWMLDLKTN------QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 142 G~~~s~~~~~~~~~~dv~~yD~~t~------~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
+.. ..+.+||+.+. ....+.. ..........+.+ ++..++.+|.... ....++.
T Consensus 85 ~~d-----------g~v~vw~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~~-----~~~~v~~ 146 (615)
T 1pgu_A 85 DES-----------GKVIVWGWTFDKESNSVEVNVKSE--FQVLAGPISDISWDFEGRRLCVVGEGRD-----NFGVFIS 146 (615)
T ss_dssp ETT-----------SEEEEEEEEEEGGGTEEEEEEEEE--EECCSSCEEEEEECTTSSEEEEEECCSS-----CSEEEEE
T ss_pred cCC-----------CEEEEEeCCCCcccccccccccch--hhcccccEEEEEEeCCCCEEEEeccCCC-----CccEEEE
Confidence 652 34667777544 3333222 1111111222233 4556666664321 1345777
Q ss_pred EEcCCCceEEeccCCCCCCCCCccceeEEEe-CC-EEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC
Q 005655 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (685)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g 291 (685)
||... .+.... .....-.++... ++ .+++.|+..+. +.+||+.+.+-...-..
T Consensus 147 ~d~~~----~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~----------------v~vwd~~~~~~~~~~~~- 201 (615)
T 1pgu_A 147 WDSGN----SLGEVS----GHSQRINACHLKQSRPMRSMTVGDDGS----------------VVFYQGPPFKFSASDRT- 201 (615)
T ss_dssp TTTCC----EEEECC----SCSSCEEEEEECSSSSCEEEEEETTTE----------------EEEEETTTBEEEEEECS-
T ss_pred EECCC----cceeee----cCCccEEEEEECCCCCcEEEEEeCCCc----------------EEEEeCCCcceeeeecc-
Confidence 76322 121111 011111222222 33 37777776654 77788776554333211
Q ss_pred CCCCCc---ceeEEEEE-C-CeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 292 MPPGPR---AGFSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 292 ~~P~~R---~g~s~~~~-~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
... .-.++++. + +..++.|+.. ..|.+||+.+...
T Consensus 202 ---~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i~vwd~~~~~~ 241 (615)
T 1pgu_A 202 ---HHKQGSFVRDVEFSPDSGEFVITVGSD--------------RKISCFDGKSGEF 241 (615)
T ss_dssp ---SSCTTCCEEEEEECSTTCCEEEEEETT--------------CCEEEEETTTCCE
T ss_pred ---cCCCCceEEEEEECCCCCCEEEEEeCC--------------CeEEEEECCCCCE
Confidence 111 22333443 4 6677777653 3477777766543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=93.47 E-value=5.9 Score=44.47 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=63.7
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCC-CCCcc---eeEEEEECCEEEEEcCccCCCCCccccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS-PPPRS---AHQAVSWKNYLYIFGGEFTSPNQERFHH 154 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~-P~~R~---~ha~v~~~~~iyvfGG~~~s~~~~~~~~ 154 (685)
++.|||.+.. +.|+++|..+. .|+.-..... ..+.+ ..+.++.++.||+...
T Consensus 68 ~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------------ 125 (582)
T 1flg_A 68 DGVIYVTASY----------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------------ 125 (582)
T ss_dssp TTEEEEEETT----------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------------
T ss_pred CCEEEEEcCC----------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------------
Confidence 7888887651 24899999876 4886433211 00111 1234556888887532
Q ss_pred cCeEEEEECCCCc--EEEcccCCCCCCC--ccceEEEECC------EEEEEccccCCCCceeeeceEEEEEcCCCc--eE
Q 005655 155 YKDFWMLDLKTNQ--WEQLNLKGCPSPR--SGHRMVLYKH------KIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQ 222 (685)
Q Consensus 155 ~~dv~~yD~~t~~--W~~~~~~g~P~~R--sgh~~v~~~~------~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~ 222 (685)
-..++.+|..|++ |+.-.. .+... ...+-++.++ .||+ |.... +..+...|+.||+.+.+ |+
T Consensus 126 dg~l~AlD~~TG~~~W~~~~~--~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~---e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 126 DASVVALNKNTGKVVWKKKFA--DHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGD---EFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp TTEEEEEESSSCCEEEEEECS--CGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCG---GGCCBCEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCCCCEEeeecCC--CCCcCcccccCCEEeCCCcCCcEEEEE-ecccc---ccCCCCEEEEEECCCCCEEee
Confidence 1468999998885 876432 11111 1112244555 5554 33211 01124579999998754 86
Q ss_pred E
Q 005655 223 E 223 (685)
Q Consensus 223 ~ 223 (685)
.
T Consensus 200 ~ 200 (582)
T 1flg_A 200 R 200 (582)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=93.44 E-value=2 Score=45.10 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=61.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
+++..| ++.+++.|+. + ..+.+||+.+.+-...-... ...-.+++.. ++..++.|+..
T Consensus 128 ~v~~s~--dg~~l~s~~~--d-------~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s~s~d------- 186 (393)
T 1erj_A 128 SVCFSP--DGKFLATGAE--D-------RLIRIWDIENRKIVMILQGH---EQDIYSLDYFPSGDKLVSGSGD------- 186 (393)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEcC--C-------CeEEEEECCCCcEEEEEccC---CCCEEEEEEcCCCCEEEEecCC-------
Confidence 455555 5677777773 2 36888999887655332221 1122233333 35555666642
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
..+.+||+.++.....-. .. .+...+.+ ++.+++.|+.+ ..|.+||+.+..-
T Consensus 187 ----~~v~iwd~~~~~~~~~~~--~~---~~v~~~~~~~~~~~~l~~~s~d---------~~v~iwd~~~~~~ 241 (393)
T 1erj_A 187 ----RTVRIWDLRTGQCSLTLS--IE---DGVTTVAVSPGDGKYIAAGSLD---------RAVRVWDSETGFL 241 (393)
T ss_dssp ----SEEEEEETTTTEEEEEEE--CS---SCEEEEEECSTTCCEEEEEETT---------SCEEEEETTTCCE
T ss_pred ----CcEEEEECCCCeeEEEEE--cC---CCcEEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcE
Confidence 457888998876543322 11 11222222 56777777753 3578888887654
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=93.42 E-value=2.6 Score=40.84 Aligned_cols=149 Identities=15% Similarity=0.310 Sum_probs=78.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEE--ecC--CCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV--ISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~--l~s--~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~ 154 (685)
.+++|+|=|. .+|+++.....+.. +.. +.+| ..--|+... ++.||+|-|
T Consensus 33 ~g~~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~wp~Lp--~~iDAa~~~~~~~~iyfFkG------------ 87 (207)
T 1pex_A 33 RGETMIFKDR-----------FFWRLHPQQVDAELFLTKSFWPELP--NRIDAAYEHPSHDLIFIFRG------------ 87 (207)
T ss_dssp TTEEEEEETT-----------EEEEECSSSSCCEEEEHHHHCTTSC--SSCCEEEEETTTTEEEEEET------------
T ss_pred CCcEEEEECC-----------EEEEEeCCCcCCCceehhHhccCCC--CCccEEEEeccCCcEEEEcc------------
Confidence 5888988873 46777665443321 211 2223 222333333 589999987
Q ss_pred cCeEEEEECCCCcE---EEcccCCCCCCCcc-ceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 155 YKDFWMLDLKTNQW---EQLNLKGCPSPRSG-HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 155 ~~dv~~yD~~t~~W---~~~~~~g~P~~Rsg-h~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
+.+|+|+..+-.- ..|...|+|..-.+ -+++.+ ++++|+|-| +..|+||..+.+-..--+.+
T Consensus 88 -~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~~~~d~gyPr~ 155 (207)
T 1pex_A 88 -RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----------NQVWRYDDTNHIMDKDYPRL 155 (207)
T ss_dssp -TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----------TEEEEEETTTTEECSSCCCB
T ss_pred -CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-----------CEEEEEeCcCccccCCCCcc
Confidence 4678886432211 23433344532122 233334 479999987 46799998764311000000
Q ss_pred ----CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEE
Q 005655 229 ----GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (685)
Q Consensus 229 ----~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (685)
-..+|. ... ++...++.+|+|-|. ..|+||..+.+-..
T Consensus 156 i~~~~~Gip~-~iD-aAf~~~g~~YfFkg~------------------~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 156 IEEDFPGIGD-KVD-AVYEKNGYIYFFNGP------------------IQFEYSIWSNRIVR 197 (207)
T ss_dssp HHHHSTTSCS-CCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred HHHcCCCCCC-Ccc-EEEEcCCcEEEEECC------------------EEEEEeCCccEEec
Confidence 001121 222 333458999999764 27889887665443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.7 Score=47.80 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=55.7
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~ 150 (685)
++...|. ++.+++.|+. + +.+.+||+.+......... +.+....+.... ++.+++.|+..
T Consensus 104 ~~~~~~~-~~~~l~s~~~--d-------~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------ 165 (408)
T 4a11_B 104 TVQWYPH-DTGMFTSSSF--D-------KTLKVWDTNTLQTADVFNF--EETVYSHHMSPVSTKHCLVAVGTRG------ 165 (408)
T ss_dssp EEEECTT-CTTCEEEEET--T-------SEEEEEETTTTEEEEEEEC--SSCEEEEEECSSCSSCCEEEEEESS------
T ss_pred EEEEccC-CCcEEEEEeC--C-------CeEEEeeCCCCccceeccC--CCceeeeEeecCCCCCcEEEEEcCC------
Confidence 3444442 2446666652 1 3688899988765544322 122111111111 23466676643
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
..+.+||+.+..-...- ........++.+ +.++++.|+.. ..+.+||+.+.
T Consensus 166 -----~~v~~~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~ll~~~~~d---------g~i~i~d~~~~ 219 (408)
T 4a11_B 166 -----PKVQLCDLKSGSCSHIL----QGHRQEILAVSWSPRYDYILATASAD---------SRVKLWDVRRA 219 (408)
T ss_dssp -----SSEEEEESSSSCCCEEE----CCCCSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTCS
T ss_pred -----CeEEEEeCCCcceeeee----cCCCCcEEEEEECCCCCcEEEEEcCC---------CcEEEEECCCC
Confidence 35888998766432211 111112222333 23477777753 35788888654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.36 E-value=2.8 Score=41.31 Aligned_cols=186 Identities=8% Similarity=0.038 Sum_probs=87.7
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~ 159 (685)
++.+++.|+. + +.+.+||+.+.......... ...-.+++.. ++.+++.|+... .+.
T Consensus 28 ~~~~l~s~~~--d-------g~v~vw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg-----------~i~ 84 (313)
T 3odt_A 28 DDSKVASVSR--D-------GTVRLWSKDDQWLGTVVYTG---QGFLNSVCYDSEKELLLFGGKDT-----------MIN 84 (313)
T ss_dssp ETTEEEEEET--T-------SEEEEEEESSSEEEEEEEEC---SSCEEEEEEETTTTEEEEEETTS-----------CEE
T ss_pred CCCEEEEEEc--C-------CcEEEEECCCCEEEEEeecC---CccEEEEEECCCCCEEEEecCCC-----------eEE
Confidence 4556667762 2 36888998776544332211 1122233333 466777776533 356
Q ss_pred EEECCCCc-EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccc
Q 005655 160 MLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (685)
Q Consensus 160 ~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~ 238 (685)
+|++.... ...+.. ..........+.+++.+++.|+.. ..+.+||.....+.. ... ..+...
T Consensus 85 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~-~~~-----~~~v~~ 147 (313)
T 3odt_A 85 GVPLFATSGEDPLYT--LIGHQGNVCSLSFQDGVVISGSWD---------KTAKVWKEGSLVYNL-QAH-----NASVWD 147 (313)
T ss_dssp EEETTCCTTSCC-CE--ECCCSSCEEEEEEETTEEEEEETT---------SEEEEEETTEEEEEE-ECC-----SSCEEE
T ss_pred EEEeeecCCCCcccc--hhhcccCEEEEEecCCEEEEEeCC---------CCEEEEcCCcEEEec-ccC-----CCceeE
Confidence 66665431 111111 111222223344466666777653 357777732222211 111 122222
Q ss_pred eeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceec
Q 005655 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (685)
Q Consensus 239 ~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~ 317 (685)
..+...++.+++.|+..+. +.+||.....- .+.. +....-.++++. ++. ++.|+..
T Consensus 148 ~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~-~~~~----~~~~~i~~~~~~~~~~-~~~~~~d- 204 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKT----------------IKLWQNDKVIK-TFSG----IHNDVVRHLAVVDDGH-FISCSND- 204 (313)
T ss_dssp EEEEETTTTEEEEEETTSC----------------EEEEETTEEEE-EECS----SCSSCEEEEEEEETTE-EEEEETT-
T ss_pred EEEccCCCCEEEEEECCCC----------------EEEEecCceEE-EEec----cCcccEEEEEEcCCCe-EEEccCC-
Confidence 2333336667777777655 66777332221 1111 112222334443 566 6666543
Q ss_pred ccCCccccccccCCcEEEEECCCCc
Q 005655 318 MEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
..|.+||+.+..
T Consensus 205 -------------g~i~i~d~~~~~ 216 (313)
T 3odt_A 205 -------------GLIKLVDMHTGD 216 (313)
T ss_dssp -------------SEEEEEETTTCC
T ss_pred -------------CeEEEEECCchh
Confidence 358999987654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=93.23 E-value=3.4 Score=41.18 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=30.4
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEE
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQ 170 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~ 170 (685)
+.+++||+.+.+....... ....+.++.. + ..||+.+ +.+++||+.+..-..
T Consensus 115 ~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~--------------~~i~~~d~~~~~~~~ 168 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA----PRQITMLAWARDGSKLYGLG--------------RDLHVMDPEAGTLVE 168 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSSCEEEES--------------SSEEEEETTTTEEEE
T ss_pred ceEEEEECCCCcEEEEEeC----CCCcceeEECCCCCEEEEeC--------------CeEEEEECCCCcEee
Confidence 6799999988765532221 1112233333 3 4466662 358899998876543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=93.22 E-value=6.8 Score=38.37 Aligned_cols=198 Identities=10% Similarity=-0.042 Sum_probs=108.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
+.+++.+. ++.||+.-.. .+.+++|++....-..+.... ...-+.+++. ++.||+.-..
T Consensus 39 ~gi~~d~~-~~~ly~~d~~---------~~~I~~~~~~g~~~~~~~~~~---~~~p~~ia~d~~~~~lyv~d~~------ 99 (267)
T 1npe_A 39 IGLAFDCV-DKVVYWTDIS---------EPSIGRASLHGGEPTTIIRQD---LGSPEGIALDHLGRTIFWTDSQ------ 99 (267)
T ss_dssp EEEEEETT-TTEEEEEETT---------TTEEEEEESSSCCCEEEECTT---CCCEEEEEEETTTTEEEEEETT------
T ss_pred EEEEEecC-CCEEEEEECC---------CCEEEEEecCCCCcEEEEECC---CCCccEEEEEecCCeEEEEECC------
Confidence 45666653 4678876541 246899999876544332211 1123455554 5789987542
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
.+.+++|++....-..+...++..| ..+++. +++||+..... ..+.|+++++....-..+...
T Consensus 100 -----~~~I~~~~~~g~~~~~~~~~~~~~P---~~i~vd~~~g~lyv~~~~~-------~~~~I~~~~~dg~~~~~~~~~ 164 (267)
T 1npe_A 100 -----LDRIEVAKMDGTQRRVLFDTGLVNP---RGIVTDPVRGNLYWTDWNR-------DNPKIETSHMDGTNRRILAQD 164 (267)
T ss_dssp -----TTEEEEEETTSCSCEEEECSSCSSE---EEEEEETTTTEEEEEECCS-------SSCEEEEEETTSCCCEEEECT
T ss_pred -----CCEEEEEEcCCCCEEEEEECCCCCc---cEEEEeeCCCEEEEEECCC-------CCcEEEEEecCCCCcEEEEEC
Confidence 2568899987654343332221111 233443 57899875321 125688888765433333221
Q ss_pred CCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE
Q 005655 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
+. ..-.++++. ++.||+.-... +.+++|++....-..+..... . -+++++.
T Consensus 165 -----~~-~~P~gia~d~~~~~lyv~d~~~----------------~~I~~~~~~g~~~~~~~~~~~--~---P~gi~~d 217 (267)
T 1npe_A 165 -----NL-GLPNGLTFDAFSSQLCWVDAGT----------------HRAECLNPAQPGRRKVLEGLQ--Y---PFAVTSY 217 (267)
T ss_dssp -----TC-SCEEEEEEETTTTEEEEEETTT----------------TEEEEEETTEEEEEEEEECCC--S---EEEEEEE
T ss_pred -----CC-CCCcEEEEcCCCCEEEEEECCC----------------CEEEEEecCCCceEEEecCCC--C---ceEEEEe
Confidence 11 122233443 57888875433 248888887543333322111 1 2456666
Q ss_pred CCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
++.+|+.... .+.|++||+.+.+-.
T Consensus 218 ~~~lyva~~~--------------~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 218 GKNLYYTDWK--------------TNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETT--------------TTEEEEEETTTTEEE
T ss_pred CCEEEEEECC--------------CCeEEEEeCCCCCce
Confidence 8889885432 356999999887654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=93.20 E-value=5.6 Score=40.85 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=108.2
Q ss_pred EEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccc
Q 005655 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHH 154 (685)
Q Consensus 75 ~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~ 154 (685)
...| +++.++|+.. .++ ...+|++|+.+.+...++... .......+..-++..++|+..
T Consensus 42 ~~Sp--Dg~~l~~~~~-~~g-----~~~l~~~d~~~g~~~~lt~~~--~~~~~~~~~spdg~~l~~~~~----------- 100 (388)
T 3pe7_A 42 CFTR--DGSKLLFGGA-FDG-----PWNYYLLDLNTQVATQLTEGR--GDNTFGGFLSPDDDALFYVKD----------- 100 (388)
T ss_dssp CBCT--TSCEEEEEEC-TTS-----SCEEEEEETTTCEEEECCCSS--CBCSSSCEECTTSSEEEEEET-----------
T ss_pred cCCC--CCCEEEEEEc-CCC-----CceEEEEeCCCCceEEeeeCC--CCCccceEEcCCCCEEEEEeC-----------
Confidence 3455 5666666552 122 136999999999888876542 111111112224443333331
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCC-----C--------CceeeeceEEEEEcCCC
Q 005655 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDT-----L--------REVRYYNDLYVFDLDQF 219 (685)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~-----~--------~~~~~~~dv~~yD~~t~ 219 (685)
-..++++|+.++.-..+.. .|..........+ ++.+++.--.... . ........|+++|+.+.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~--~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQ--VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp TTEEEEEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred CCeEEEEECCCCcceeeee--chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 1469999999988766554 3433322222222 3333331100000 0 00112368999999988
Q ss_pred ceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcce
Q 005655 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (685)
Q Consensus 220 ~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g 299 (685)
+-..+... +.......+...++..+++...... ......+|.+|+.+.....+... +.....
T Consensus 179 ~~~~l~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~----------~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~ 240 (388)
T 3pe7_A 179 ESTVILQE-----NQWLGHPIYRPYDDSTVAFCHEGPH----------DLVDARMWLINEDGTNMRKVKTH---AEGESC 240 (388)
T ss_dssp CEEEEEEE-----SSCEEEEEEETTEEEEEEEEECSCT----------TTSSCSEEEEETTSCCCEESCCC---CTTEEE
T ss_pred ceEEeecC-----CccccccEECCCCCCEEEEEEecCC----------CCCcceEEEEeCCCCceEEeeeC---CCCccc
Confidence 76666543 2111222222213444444332211 01234699999887766655431 111111
Q ss_pred eEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 300 FSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 300 ~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.+.+.. +++.++|...... .....|++||+.+..-..+..
T Consensus 241 ~~~~~spdg~~l~~~~~~~~---------~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKG---------SPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp EEEEECTTSSCEEEEEEETT---------CCCEEEEEECTTTCCEEEEEE
T ss_pred ccceECCCCCEEEEEecCCC---------CCcceEEEEecCCCceEEEEc
Confidence 122222 5554444333210 011249999999987766544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.16 E-value=3.4 Score=47.03 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=55.4
Q ss_pred EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCc
Q 005655 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGI 269 (685)
Q Consensus 191 ~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (685)
.+++.|+.+ ..|.+||+.+..-...-.. . ...-.+++.. ++.+++.||.++.
T Consensus 532 ~~l~s~s~d---------~~v~vwd~~~~~~~~~~~~-----h-~~~v~~v~~spdg~~l~sg~~Dg~------------ 584 (694)
T 3dm0_A 532 PTIVSASWD---------KTVKVWNLSNCKLRSTLAG-----H-TGYVSTVAVSPDGSLCASGGKDGV------------ 584 (694)
T ss_dssp CEEEEEETT---------SCEEEEETTTCCEEEEECC-----C-SSCEEEEEECTTSSEEEEEETTSB------------
T ss_pred ceEEEEeCC---------CeEEEEECCCCcEEEEEcC-----C-CCCEEEEEEeCCCCEEEEEeCCCe------------
Confidence 355666643 4588889877654332111 1 1111222333 6778888887765
Q ss_pred eeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 270 IHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 270 ~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
+.++|+.+.+-.... .....-+++++..+..++++|.. +.|.+||+.+..-.
T Consensus 585 ----i~iwd~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~--------------~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 585 ----VLLWDLAEGKKLYSL-----EANSVIHALCFSPNRYWLCAATE--------------HGIKIWDLESKSIV 636 (694)
T ss_dssp ----CEEEETTTTEEEECC-----BCSSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTEEE
T ss_pred ----EEEEECCCCceEEEe-----cCCCcEEEEEEcCCCcEEEEEcC--------------CCEEEEECCCCCCh
Confidence 667887766432211 11222344555544445555432 34899999876543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=93.15 E-value=3.6 Score=41.29 Aligned_cols=192 Identities=9% Similarity=-0.008 Sum_probs=91.4
Q ss_pred EEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 74 ~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
+.+.| ++.+++.|+. + ..+.+||+.+.+-. .+.. ....-.+++.. ++.+++.|+.+.
T Consensus 61 ~~~~~--~~~~l~s~s~--d-------~~i~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~sgs~D~------ 119 (304)
T 2ynn_A 61 GKFIA--RKNWIIVGSD--D-------FRIRVFNYNTGEKVVDFEA----HPDYIRSIAVHPTKPYVLSGSDDL------ 119 (304)
T ss_dssp EEEEG--GGTEEEEEET--T-------SEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSSEEEEEETTS------
T ss_pred EEEeC--CCCEEEEECC--C-------CEEEEEECCCCcEEEEEeC----CCCcEEEEEEcCCCCEEEEECCCC------
Confidence 34444 4566666662 2 35788898877543 2221 11112233333 355667776533
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
.+.+||+.++. ..... +......-.++.+ ++.+++.|+.+ ..|.+||+.+..-...-..
T Consensus 120 -----~v~lWd~~~~~-~~~~~--~~~h~~~v~~v~~~p~~~~~l~sgs~D---------~~v~iwd~~~~~~~~~~~~- 181 (304)
T 2ynn_A 120 -----TVKLWNWENNW-ALEQT--FEGHEHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT- 181 (304)
T ss_dssp -----CEEEEEGGGTT-EEEEE--ECCCCSCEEEEEECTTCTTEEEEEETT---------SEEEEEETTCSSCSEEEEC-
T ss_pred -----eEEEEECCCCc-chhhh--hcccCCcEEEEEECCCCCCEEEEEeCC---------CeEEEEECCCCCccceecc-
Confidence 47778876542 11111 0001111122333 34677777753 3577888765431111111
Q ss_pred CCCCCCCccceeEEE--e-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE
Q 005655 229 GSMWPSPRSGFQFFV--Y-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~--~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
...+.-..+.. . ++.+++.|+..+. +.++|+.+..-...-. + ....-.++++.
T Consensus 182 ----~~~~~v~~~~~~~~~~~~~l~s~s~D~~----------------i~iWd~~~~~~~~~~~-~---h~~~v~~~~~~ 237 (304)
T 2ynn_A 182 ----GQERGVNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLE-G---HMSNVSFAVFH 237 (304)
T ss_dssp ----CCTTCEEEEEECCSTTCCEEEEEETTSE----------------EEEEETTTTEEEEEEE-C---CSSCEEEEEEC
T ss_pred ----CCcCcEEEEEEEEcCCCCEEEEEcCCCe----------------EEEEeCCCCccceeeC-C---CCCCEEEEEEC
Confidence 11111111222 1 4556777776654 7778877654322211 1 11111223333
Q ss_pred -CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
++.+++.|+.. ..|.+||+.+.+
T Consensus 238 p~~~~l~s~s~D--------------g~i~iWd~~~~~ 261 (304)
T 2ynn_A 238 PTLPIIISGSED--------------GTLKIWNSSTYK 261 (304)
T ss_dssp SSSSEEEEEETT--------------SCEEEEETTTCC
T ss_pred CCCCEEEEEcCC--------------CeEEEEECCCCc
Confidence 45667777653 348899987754
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.14 E-value=7.2 Score=40.93 Aligned_cols=196 Identities=13% Similarity=0.242 Sum_probs=103.0
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCC-CCC-C-c-------ceeEEEEE----CC
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPP-P-R-------SAHQAVSW----KN 135 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~-~-R-------~~ha~v~~----~~ 135 (685)
.-+++++.|.+.+.||+.+.. +. +-.-|++++-...+|+.+..+. .|. + + .-+++++. ++
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~~---g~---~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 129 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAART---GH---LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG 129 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEEC--------CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT
T ss_pred ceEEEEECCCCCCeEEEEecC---CC---CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC
Confidence 346677776545778876532 10 1114777766678999886431 111 1 1 11223332 46
Q ss_pred EEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CCC--------------CCccceEEEE---CCEEEEEcc
Q 005655 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS--------------PRSGHRMVLY---KHKIIVFGG 197 (685)
Q Consensus 136 ~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~--------------~Rsgh~~v~~---~~~lyv~GG 197 (685)
.||+.+. ...+++.+-...+|+.+.... .|. ...-|++++. .+.||+.++
T Consensus 130 ~l~~g~~------------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~ 197 (394)
T 3b7f_A 130 TWYAGTS------------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS 197 (394)
T ss_dssp CEEEEEE------------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEec------------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC
Confidence 6776542 135778877778999885310 121 1122344433 256777533
Q ss_pred ccCCCCceeeeceEEEEEcCCCceEEeccCCC-CCCCCC-----ccceeEEEe-C--CEEEEEecccCCCCcccCCCCCC
Q 005655 198 FYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG-SMWPSP-----RSGFQFFVY-Q--DEVFLYGGYSKEVSTDKNQSEKG 268 (685)
Q Consensus 198 ~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~-~~~P~~-----Rs~~s~~~~-~--~~Iyv~GG~~~~~~~~~~~~~~~ 268 (685)
. ..|++.+-...+|+.+..... ..+|.+ ...++++.. . +.||+.. .
T Consensus 198 ~----------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-~-------------- 252 (394)
T 3b7f_A 198 S----------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-H-------------- 252 (394)
T ss_dssp T----------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-T--------------
T ss_pred C----------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-C--------------
Confidence 1 236777667789998864211 111221 223444444 2 5666632 1
Q ss_pred ceeeeEEEEeCCCceeEEeecCCCCCCC--cceeEEEEE---CCeEEEec
Q 005655 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGP--RAGFSMCVH---KKRALLFG 313 (685)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~~~~~g~~P~~--R~g~s~~~~---~~~iyvfG 313 (685)
..+++++-...+|+.+... .|.. ..++++++. .+.||+..
T Consensus 253 ---~gl~~s~D~G~tW~~~~~~--l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 253 ---CGIYRMDRREGVWKRIGDA--MPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp ---TEEEEEETTTTEEECGGGG--SCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred ---CeEEEeCCCCCcceECCCC--CCCCCccceEEEEECCCCCCEEEEEe
Confidence 1277888888999988641 2321 344555553 46677753
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.31 Score=50.43 Aligned_cols=115 Identities=13% Similarity=0.132 Sum_probs=49.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCc-EEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~-W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~ 149 (685)
.++...| ++.+++.|+. + +.+.+||+.+.. |..+.... .....-.+++.. ++.+++.|+..
T Consensus 59 ~~~~~s~--~~~~l~s~s~--d-------~~v~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d----- 121 (377)
T 3dwl_C 59 TCVDWAP--KSNRIVTCSQ--D-------RNAYVYEKRPDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGA----- 121 (377)
T ss_dssp EEEEECT--TTCCEEEEET--T-------SSEEEC------CCCCEEECC-CCSSCEEEEECCTTSSCCEEEESS-----
T ss_pred EEEEEeC--CCCEEEEEeC--C-------CeEEEEEcCCCCceeeeeEec-ccCCceEEEEECCCCCEEEEEecC-----
Confidence 3445555 4667777762 2 357888888776 44322211 111112222222 45666677643
Q ss_pred ccccccCeEEEEECCCCc-EEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 150 ERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
..+.+||+.+.. |..+.....+.. .....+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 122 ------~~i~iwd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~ 178 (377)
T 3dwl_C 122 ------RVISVCYFEQENDWWVSKHLKRPLR-STILSLDWHPNNVLLAAGCAD---------RKAYVLSAYVR 178 (377)
T ss_dssp ------SCEEECCC-----CCCCEEECSSCC-SCEEEEEECTTSSEEEEEESS---------SCEEEEEECCS
T ss_pred ------CeEEEEEECCcccceeeeEeecccC-CCeEEEEEcCCCCEEEEEeCC---------CEEEEEEEEec
Confidence 246677776654 322222111111 12222333 55677777753 35777887543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=4 Score=45.77 Aligned_cols=106 Identities=12% Similarity=0.100 Sum_probs=61.6
Q ss_pred eceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeE
Q 005655 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (685)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (685)
...|+++|..+.....+... +..+.-|.+... +..+|+.... .+.+.++|+.+.+-.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i-----~~~~~~~d~~~~pdgr~~~va~~~----------------sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI-----SAERFLHDGGLDGSHRYFITAANA----------------RNKLVVIDTKEGKLV 377 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE-----ECCSSEEEEEECTTSCEEEEEEGG----------------GTEEEEEETTTTEEE
T ss_pred CCeEEEEecCCCccceeeee-----eccccccCceECCCCCEEEEEeCC----------------CCeEEEEECCCCcEE
Confidence 36788999887766555544 445555555544 3334443322 234888999988765
Q ss_pred EeecC-CCCCCCcceeEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCCC-----cEEEEEe
Q 005655 286 KVKKI-GMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-----RWYPLEL 348 (685)
Q Consensus 286 ~~~~~-g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-----~W~~l~~ 348 (685)
..... +..|.+..|... ++ .+.+|+.+-.. -+.|.++|..+. .|..+..
T Consensus 378 ~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g-------------~~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMG-------------DDSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp EEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSS-------------SSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEeccCcCCCCccceee-ECCCCCcEEEeCCCC-------------CCeEEEecCCCCCCccccCEEEEE
Confidence 55555 555666545543 34 35676654221 145888887763 2766554
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=93.10 E-value=2 Score=43.47 Aligned_cols=121 Identities=11% Similarity=0.039 Sum_probs=60.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
++++..| ++.||+.+.. ++. ..+.|++||+.+.....+.... +....-..+++. ++.+|+........
T Consensus 90 ~~i~~~~--dg~l~v~~~~--~~~---~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~--- 158 (333)
T 2dg1_A 90 AAIKIHK--DGRLFVCYLG--DFK---STGGIFAATENGDNLQDIIEDL-STAYCIDDMVFDSKGGFYFTDFRGYST--- 158 (333)
T ss_dssp EEEEECT--TSCEEEEECT--TSS---SCCEEEEECTTSCSCEEEECSS-SSCCCEEEEEECTTSCEEEEECCCBTT---
T ss_pred ceEEECC--CCcEEEEeCC--CCC---CCceEEEEeCCCCEEEEEEccC-ccCCcccceEECCCCCEEEEecccccc---
Confidence 3444444 4566665431 100 1136899999888765332211 111222233333 57788764321110
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CC-EEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
.....+|+||+.+.....+... .. .-++++.. ++ .||+.... .+.|++||+.+
T Consensus 159 --~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~i~~~~dg~~l~v~~~~---------~~~i~~~d~~~ 213 (333)
T 2dg1_A 159 --NPLGGVYYVSPDFRTVTPIIQN-IS---VANGIALSTDEKVLWVTETT---------ANRLHRIALED 213 (333)
T ss_dssp --BCCEEEEEECTTSCCEEEEEEE-ES---SEEEEEECTTSSEEEEEEGG---------GTEEEEEEECT
T ss_pred --CCCceEEEEeCCCCEEEEeecC-CC---cccceEECCCCCEEEEEeCC---------CCeEEEEEecC
Confidence 1135799999988777665321 11 11223332 33 57776432 35688999854
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=93.06 E-value=8.9 Score=39.69 Aligned_cols=201 Identities=7% Similarity=-0.063 Sum_probs=99.8
Q ss_pred EEEEeccCCCEEEEE-cCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILY-GGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vf-GG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
++++.| +++++++ +|. .+ +.+.++|+.+.+........ .. -.+++.. ++.+++.|+.
T Consensus 138 ~v~fSp--Dg~~la~as~~-~d-------~~i~iwd~~~~~~~~~~~~~--~~--V~~v~fspdg~~l~s~s~------- 196 (365)
T 4h5i_A 138 LVYISR--EGTVAAIASSK-VP-------AIMRIIDPSDLTEKFEIETR--GE--VKDLHFSTDGKVVAYITG------- 196 (365)
T ss_dssp EEEECT--TSSCEEEEESC-SS-------CEEEEEETTTTEEEEEEECS--SC--CCEEEECTTSSEEEEECS-------
T ss_pred EEEEcC--CCCEEEEEECC-CC-------CEEEEeECCCCcEEEEeCCC--Cc--eEEEEEccCCceEEeccc-------
Confidence 345556 5555544 442 11 35788999888765332211 11 1223333 4566666542
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (685)
+.+.+++..++.....................-++.+++.++..... ...++.+++....+..+.....
T Consensus 197 -----~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~-----~~~i~~~~~~~~~~~~~~~~~~- 265 (365)
T 4h5i_A 197 -----SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK-----GIVLTKISIKSGNTSVLRSKQV- 265 (365)
T ss_dssp -----SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC-----CEEEEEEEEETTEEEEEEEEEE-
T ss_pred -----eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc-----eeEEeecccccceecceeeeee-
Confidence 34667887777654433211111111112222377777777764322 2346677776665543322100
Q ss_pred CCCCCccc-eeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CC
Q 005655 231 MWPSPRSG-FQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (685)
Q Consensus 231 ~~P~~Rs~-~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~ 307 (685)
...... .+++.. ++.+++.|+.++. +.+||..+.+-......+ ....-.++++. ++
T Consensus 266 --~~~~~~V~~~~~Spdg~~lasgs~D~~----------------V~iwd~~~~~~~~~~~~g---H~~~V~~v~fSpdg 324 (365)
T 4h5i_A 266 --TNRFKGITSMDVDMKGELAVLASNDNS----------------IALVKLKDLSMSKIFKQA---HSFAITEVTISPDS 324 (365)
T ss_dssp --ESSCSCEEEEEECTTSCEEEEEETTSC----------------EEEEETTTTEEEEEETTS---SSSCEEEEEECTTS
T ss_pred --cCCCCCeEeEEECCCCCceEEEcCCCE----------------EEEEECCCCcEEEEecCc---ccCCEEEEEECCCC
Confidence 001111 122233 7788888888765 778898876533221111 01111223333 67
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
++++-|+.. +.|-+|++..
T Consensus 325 ~~laS~S~D--------------~tvrvw~ip~ 343 (365)
T 4h5i_A 325 TYVASVSAA--------------NTIHIIKLPL 343 (365)
T ss_dssp CEEEEEETT--------------SEEEEEECCT
T ss_pred CEEEEEeCC--------------CeEEEEEcCC
Confidence 777777653 3488888754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.98 Score=47.07 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=75.5
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC----CccceEEEE--C-CEEEEEccccCCCCceee
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP----RSGHRMVLY--K-HKIIVFGGFYDTLREVRY 207 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~----Rsgh~~v~~--~-~~lyv~GG~~~~~~~~~~ 207 (685)
+.+++.|+.. ..+.+||+.+......-. .+.. ......+.+ + ..+++.|+..+.
T Consensus 178 ~~~l~~~~~d-----------g~v~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~------ 238 (416)
T 2pm9_A 178 AHVFASAGSS-----------NFASIWDLKAKKEVIHLS--YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN------ 238 (416)
T ss_dssp TTEEEEESSS-----------SCEEEEETTTTEEEEEEC--CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS------
T ss_pred CcEEEEEcCC-----------CCEEEEECCCCCcceEEe--ccccccccCCceEEEEECCCCCCEEEEEECCCC------
Confidence 5677777753 358899998876543322 1211 222223333 2 357777764321
Q ss_pred eceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeE
Q 005655 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (685)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (685)
...|.+||+.+..-. +..... .....-.+++.. ++.+++.|+.++. +.+||+.+.+-.
T Consensus 239 ~~~i~~~d~~~~~~~-~~~~~~---~~~~~v~~~~~s~~~~~~l~s~~~dg~----------------v~~wd~~~~~~~ 298 (416)
T 2pm9_A 239 DPSILIWDLRNANTP-LQTLNQ---GHQKGILSLDWCHQDEHLLLSSGRDNT----------------VLLWNPESAEQL 298 (416)
T ss_dssp SCCCCEEETTSTTSC-SBCCCS---CCSSCEEEEEECSSCSSCEEEEESSSE----------------EEEECSSSCCEE
T ss_pred CceEEEEeCCCCCCC-cEEeec---CccCceeEEEeCCCCCCeEEEEeCCCC----------------EEEeeCCCCccc
Confidence 126788888764311 111100 011111222222 5677888877654 778887765433
Q ss_pred EeecCCCCCCCcceeEEEEE-CC-eEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 286 KVKKIGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 286 ~~~~~g~~P~~R~g~s~~~~-~~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
..-.. ....-.++++. ++ .+++.|+.. +.|.+||+.+.
T Consensus 299 ~~~~~----~~~~v~~~~~s~~~~~~l~s~~~d--------------~~i~iw~~~~~ 338 (416)
T 2pm9_A 299 SQFPA----RGNWCFKTKFAPEAPDLFACASFD--------------NKIEVQTLQNL 338 (416)
T ss_dssp EEEEC----SSSCCCCEEECTTCTTEEEECCSS--------------SEEEEEESCCC
T ss_pred eeecC----CCCceEEEEECCCCCCEEEEEecC--------------CcEEEEEccCC
Confidence 22111 01111233343 34 677777753 34888888654
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.05 E-value=3.6 Score=43.31 Aligned_cols=193 Identities=8% Similarity=0.086 Sum_probs=101.2
Q ss_pred cEEEEEcCC--CcEEEecCCCCCCCcceeEEEEE---CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-
Q 005655 102 DLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG- 175 (685)
Q Consensus 102 dv~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~---~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g- 175 (685)
-+++|+... .+|..+... +....-+++++. ++.||+.+.... .-.-|++.+-...+|+.+....
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~--~~~~~v~~i~~dp~~~~~l~~g~~~g~--------~g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPV--FLGHTIHHIVQDPREPERMLMAARTGH--------LGPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEE--STTSEEEEEEECSSSTTCEEEEEEC----------CCEEEEEESSTTSCCEECSBCCC
T ss_pred ceEEEECCCCCCCceECCcc--CCCCceEEEEECCCCCCeEEEEecCCC--------CCccEEEeCCCCCCceECCcccc
Confidence 367787765 689976421 122334555554 467887653210 0024777766678999986421
Q ss_pred CCCC--C----c-cc--eEEEE----CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCC-----------
Q 005655 176 CPSP--R----S-GH--RMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM----------- 231 (685)
Q Consensus 176 ~P~~--R----s-gh--~~v~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~----------- 231 (685)
.+.. + . .+ ++++. .+.||+.+. ..-|++.+-...+|+.+.......
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~----------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~ 171 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS----------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQD 171 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE----------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC--
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEec----------CCcEEEEcCCCCCeEECcCccCCcccccccccccc
Confidence 1211 1 1 11 23332 466776532 135777777778899886421000
Q ss_pred -CCCCccceeEEEe---CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC---CCCCC-----cce
Q 005655 232 -WPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---MPPGP-----RAG 299 (685)
Q Consensus 232 -~P~~Rs~~s~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g---~~P~~-----R~g 299 (685)
.+....-+++++. .+.|||..+. . -+++.+-...+|+.+.... ..|.+ ...
T Consensus 172 g~~~~~~i~~i~~d~~~~~~l~vg~~~-g----------------gl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~ 234 (394)
T 3b7f_A 172 GTPDGPKMHSILVDPRDPKHLYIGMSS-G----------------GVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDP 234 (394)
T ss_dssp --CCCCEEEEEEECTTCTTCEEEEEET-B----------------EEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCE
T ss_pred CCCCCCceeEEEECCCCCCEEEEEECC-C----------------CEEEECCCCCCceECCCCccccccCCCccccCcce
Confidence 0111222344443 3566665322 1 2677777788999885311 11221 223
Q ss_pred eEEEEEC---CeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 300 FSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 300 ~s~~~~~---~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
+++++.. +.||+ |.. ..||+++-...+|..+.
T Consensus 235 ~~i~~~~~~~~~l~v-g~~---------------~gl~~s~D~G~tW~~~~ 269 (394)
T 3b7f_A 235 HCVVQHPAAPDILYQ-QNH---------------CGIYRMDRREGVWKRIG 269 (394)
T ss_dssp EEEEECSSSTTEEEE-EET---------------TEEEEEETTTTEEECGG
T ss_pred eEEEECCCCCCEEEE-EcC---------------CeEEEeCCCCCcceECC
Confidence 4555542 55665 321 23788887788898775
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=93.01 E-value=3.2 Score=39.71 Aligned_cols=149 Identities=13% Similarity=0.228 Sum_probs=81.5
Q ss_pred eEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCC--CcEEE--ccc--CCCCCCCccceEEEE--CCEEEEEcccc
Q 005655 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQWEQ--LNL--KGCPSPRSGHRMVLY--KHKIIVFGGFY 199 (685)
Q Consensus 128 ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t--~~W~~--~~~--~g~P~~Rsgh~~v~~--~~~lyv~GG~~ 199 (685)
-+++.+++.+|+|=| +.+|+|+... ..... +.. .++|.. --++..+ ++++|+|-|
T Consensus 10 DAi~~~~g~~yfFkg-------------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~--IDAa~~~~~~~~~yfFkG-- 72 (195)
T 1itv_A 10 DAIAEIGNQLYLFKD-------------GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG-- 72 (195)
T ss_dssp SEEEEETTEEEEEET-------------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET--
T ss_pred CEEEEeCCEEEEEEC-------------CEEEEEECCccccCCCcEEhhhccCCCCCC--ccEEEEECCCCeEEEEeC--
Confidence 345567899999987 4689998765 22322 211 234431 2233333 678999988
Q ss_pred CCCCceeeeceEEEEEcCCCce-EEeccCCCCCCCCC--ccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEE
Q 005655 200 DTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSP--RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (685)
Q Consensus 200 ~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~--Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (685)
+.+|+|+..+..- ..|... .+|.. ....++...++++|+|-|. ..|+
T Consensus 73 ---------~~yw~~~~~~~~~Pk~i~~~---G~p~~~~~iDAA~~~~~g~~yfFkg~------------------~ywr 122 (195)
T 1itv_A 73 ---------RQVWVYTGASVLGPRRLDKL---GLGADVAQVTGALRSGRGKMLLFSGR------------------RLWR 122 (195)
T ss_dssp ---------TEEEEEETTEEEEEEEGGGG---TCCTTCCCCCEEEECSTTEEEEEETT------------------EEEE
T ss_pred ---------CEEEEEcCCccCCCEEeeec---ccCCCccceeEEEEcCCCeEEEEeCC------------------EEEE
Confidence 4568887542111 011111 12321 2333333337899999663 2789
Q ss_pred EeCCCceeEE-----eec--CCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 277 LDPRTWEWSK-----VKK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 277 yd~~t~~W~~-----~~~--~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
||..+.+=.. +.. .|. | ..-.++...++.+|+|-|.. .|.||..+.+
T Consensus 123 ~d~~~~~~~~gyPr~i~~~w~Gv-p--~~idaa~~~~g~~Yffkg~~----------------y~~~~~~~~~ 176 (195)
T 1itv_A 123 FDVKAQMVDPRSASEVDRMFPGV-P--LDTHDVFQFREKAYFCQDRF----------------YWRVSSRSEL 176 (195)
T ss_dssp EETTTTEECGGGCEEHHHHSTTS-C--SSCSEEEEETTEEEEEETTE----------------EEEEECCTTC
T ss_pred EeCCcccccCCCccChhhcCCCC-C--CCCCEEEEeCCeEEEEeCCE----------------EEEEECCccE
Confidence 9976643110 100 121 2 12234445579999998753 7888887664
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=92.97 E-value=0.36 Score=51.64 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=15.3
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
++.+++.|+.. ..|.+||+.+.
T Consensus 243 ~~~~l~s~~~d---------g~i~i~d~~~~ 264 (430)
T 2xyi_A 243 HESLFGSVADD---------QKLMIWDTRNN 264 (430)
T ss_dssp CTTEEEEEETT---------SEEEEEETTCS
T ss_pred CCCEEEEEeCC---------CeEEEEECCCC
Confidence 45677777642 46889998865
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=92.95 E-value=1.5 Score=45.37 Aligned_cols=91 Identities=10% Similarity=0.048 Sum_probs=48.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.+.+||+.+.....+..... ....-.+++.. ++.+++.|+.. ..+.+||+....-..+.. ..
T Consensus 142 ~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~-----h~ 204 (383)
T 3ei3_B 142 ATTLRDFSGSVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDST-----------GRLLLLGLDGHEIFKEKL-----HK 204 (383)
T ss_dssp EEEEEETTSCEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETT-----------SEEEEEETTSCEEEEEEC-----SS
T ss_pred EEEEEECCCCceEEEeccCC-CCCCeEEEEECCCCCEEEEECCC-----------CCEEEEECCCCEEEEecc-----CC
Confidence 57788888776666544321 11112233333 45666676642 468889985444333322 11
Q ss_pred ccceEEEE--CCE-EEEEccccCCCCceeeeceEEEEEcCC
Q 005655 181 SGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 181 sgh~~v~~--~~~-lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
..-..+.+ ++. +++.|+.+ ..|.+||+.+
T Consensus 205 ~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~ 236 (383)
T 3ei3_B 205 AKVTHAEFNPRCDWLMATSSVD---------ATVKLWDLRN 236 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEETT---------SEEEEEEGGG
T ss_pred CcEEEEEECCCCCCEEEEEeCC---------CEEEEEeCCC
Confidence 12223333 333 77777753 4688888876
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=92.91 E-value=4.2 Score=40.80 Aligned_cols=144 Identities=10% Similarity=0.029 Sum_probs=70.0
Q ss_pred eEEEEeccCCCE-EEEEcCeecCCCceeeeccEEEEEc-CCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETE-LILYGGEFYNGNKTYVYGDLYRYDV-EKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~-L~vfGG~~~~g~~~~~~ndv~~yd~-~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~ 149 (685)
.+++..| ++. +++.|+. + +.+++||+ .+.....+.... ....-.+++...+.+++.|+..
T Consensus 60 ~~~~~~~--~~~~~l~~~~~--d-------g~i~~wd~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~l~s~~~d----- 121 (342)
T 1yfq_A 60 LCCNFID--NTDLQIYVGTV--Q-------GEILKVDLIGSPSFQALTNNE--ANLGICRICKYGDDKLIAASWD----- 121 (342)
T ss_dssp EEEEEEE--SSSEEEEEEET--T-------SCEEEECSSSSSSEEECBSCC--CCSCEEEEEEETTTEEEEEETT-----
T ss_pred EEEEECC--CCCcEEEEEcC--C-------CeEEEEEeccCCceEeccccC--CCCceEEEEeCCCCEEEEEcCC-----
Confidence 3455555 466 6777762 2 36889999 888776654310 1112223333335556666642
Q ss_pred ccccccCeEEEEECCCCc-------EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC-Cc-
Q 005655 150 ERFHHYKDFWMLDLKTNQ-------WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FK- 220 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-------W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~- 220 (685)
..+.+||+.+.. ...+.. ......-.++....+. ++.|+. -..|.+||+.+ ..
T Consensus 122 ------~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-l~~~~~---------d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 122 ------GLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSR-LIVGMN---------NSQVQWFRLPLCEDD 183 (342)
T ss_dssp ------SEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSE-EEEEES---------TTEEEEEESSCCTTC
T ss_pred ------CeEEEEcccccccccccccCCeeeE--EeeCCceEEEEecCCc-EEEEeC---------CCeEEEEECCccccc
Confidence 346777765300 111221 1212222233333445 555553 24688999887 33
Q ss_pred -eEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCC
Q 005655 221 -WQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (685)
Q Consensus 221 -W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~ 257 (685)
....... ....-.+++.. ++.+++.|+..+.
T Consensus 184 ~~~~~~~~------~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 184 NGTIEESG------LKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp CCEEEECS------CSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred cceeeecC------CCCceeEEEECCCCCCEEEEEecCCc
Confidence 3323221 11112223333 4567777776543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.89 E-value=2.1 Score=44.06 Aligned_cols=211 Identities=9% Similarity=0.071 Sum_probs=99.1
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC--CE-EEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NY-LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~--~~-iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (685)
..+|++|+.+.+...+... .......+... +. |++... ... . .....+|++|+.+..+..+.. .
T Consensus 168 ~~l~~~d~~~g~~~~~~~~----~~~~~~~~~sp~dg~~l~~~~~-~~~--~---~~~~~l~~~d~~~~~~~~l~~---~ 234 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD----TAWLGHPIYRPFDDSTVGFCHE-GPH--D---LVDARMWLVNEDGSNVRKIKE---H 234 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEEC-SCS--S---SCSCCCEEEETTSCCCEESSC---C
T ss_pred ceEEEEECCCCcEEeeccC----CcccccceECCCCCCEEEEEec-CCC--C---CCCceEEEEECCCCceeEeec---c
Confidence 4689999999888776532 12222223333 44 433321 111 0 112579999998888777654 1
Q ss_pred CCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEeccc
Q 005655 178 SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYS 255 (685)
Q Consensus 178 ~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~ 255 (685)
.+......+.+ ++..+++.+..... ....|++||+.+.....+... +. ........++.++++++..
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~----~~~~l~~~d~~~g~~~~l~~~-----~~--~~~~~s~~dg~~l~~~~~~ 303 (396)
T 3c5m_A 235 AEGESCTHEFWIPDGSAMAYVSYFKGQ----TDRVIYKANPETLENEEVMVM-----PP--CSHLMSNFDGSLMVGDGCD 303 (396)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTT----CCEEEEEECTTTCCEEEEEEC-----CS--EEEEEECSSSSEEEEEECC
T ss_pred CCCccccceEECCCCCEEEEEecCCCC----ccceEEEEECCCCCeEEeeeC-----CC--CCCCccCCCCceEEEecCC
Confidence 11222222333 45444444332211 123499999998887776644 21 1122222155666665432
Q ss_pred CCCCcccC-CCCCCceeeeEEEEeCCCceeEEeecCCCCC-----C-CcceeEEEEE-CCeEEEecceecccCCcccccc
Q 005655 256 KEVSTDKN-QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP-----G-PRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMS 327 (685)
Q Consensus 256 ~~~~~~~~-~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P-----~-~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~ 327 (685)
.+..... ......-...++++|+.+.....+....... . .......++. +++.++|.....
T Consensus 304 -~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~---------- 372 (396)
T 3c5m_A 304 -APVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE---------- 372 (396)
T ss_dssp -C----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT----------
T ss_pred -cceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC----------
Confidence 1000000 0000011246899999887776665421100 0 0001112222 454444543321
Q ss_pred ccCCcEEEEECCCCcEEEEE
Q 005655 328 LFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 328 ~~~ndl~~yd~~t~~W~~l~ 347 (685)
-...||.+++.+..+..+.
T Consensus 373 -~~~~l~~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 373 -GVPAIYIADVPESYKHLEH 391 (396)
T ss_dssp -SSCEEEEEECCTTCC----
T ss_pred -CCceEEEEEEccccccccc
Confidence 1346999998887776544
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=92.85 E-value=2.2 Score=46.92 Aligned_cols=150 Identities=9% Similarity=-0.031 Sum_probs=75.1
Q ss_pred EEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC-CccceEEEE--C-CEEEEEccccCCCCceeeeceEE
Q 005655 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-RSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 137 iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~-Rsgh~~v~~--~-~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
+++.|+.. ..+.+||+.+..-...-. .... .....++.+ + +.+++.|+.. ..+.
T Consensus 175 ~l~~~~~d-----------~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~ 232 (615)
T 1pgu_A 175 RSMTVGDD-----------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSD---------RKIS 232 (615)
T ss_dssp EEEEEETT-----------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETT---------CCEE
T ss_pred EEEEEeCC-----------CcEEEEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCC---------CeEE
Confidence 67777642 457888887655433211 1111 002223333 4 6677777753 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCC
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~ 292 (685)
+||+.+.+....-..+......+... +...++.+++.|+..+. +.+||+.+......-....
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIFA--LSWLDSQKFATVGADAT----------------IRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEEE--EEESSSSEEEEEETTSE----------------EEEEETTTTEEEEEEECCT
T ss_pred EEECCCCCEeEEecccccccCCceEE--EEEcCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcCCC
Confidence 99988776544321100000112222 22226777777776554 7788887765544332211
Q ss_pred CCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 293 PPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 293 ~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
.+......+++..++..++.|+.. +.|.+||+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~--------------g~i~~~d~~~ 328 (615)
T 1pgu_A 295 QQLGNQQVGVVATGNGRIISLSLD--------------GTLNFYELGH 328 (615)
T ss_dssp TCGGGCEEEEEEEETTEEEEEETT--------------SCEEEEETTE
T ss_pred CcccCceeEEEeCCCCeEEEEECC--------------CCEEEEECCC
Confidence 111122223333366666666643 3477888765
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.99 Score=55.16 Aligned_cols=191 Identities=9% Similarity=0.030 Sum_probs=96.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++++.| ++.++++|+. + +.+++|+..+.......... ... -.+++.. ++..++.||..
T Consensus 966 ~~~~sp--~g~~l~~g~~--~-------g~i~i~d~~~~~~~~~~~~h--~~~-v~~l~~s~dg~~l~s~~~d------- 1024 (1249)
T 3sfz_A 966 CCCLSP--HLEYVAFGDE--D-------GAIKIIELPNNRVFSSGVGH--KKA-VRHIQFTADGKTLISSSED------- 1024 (1249)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCCEEEETTTTSCEEECCCC--SSC-CCCEEECSSSSCEEEECSS-------
T ss_pred EEEEcC--CCCEEEEEcC--C-------CCEEEEEcCCCceeeecccC--CCc-eEEEEECCCCCEEEEEcCC-------
Confidence 344444 5667777762 2 35788898877544332211 111 1122222 46666777643
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (685)
..+.+||+.++....+.. . ...-.+++...+..++.|+.. ..+.+||+.+.+-...-..
T Consensus 1025 ----g~i~vwd~~~~~~~~~~~--~--~~~v~~~~~~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~---- 1083 (1249)
T 3sfz_A 1025 ----SVIQVWNWQTGDYVFLQA--H--QETVKDFRLLQDSRLLSWSFD---------GTVKVWNVITGRIERDFTC---- 1083 (1249)
T ss_dssp ----SBEEEEETTTTEEECCBC--C--SSCEEEEEECSSSEEEEEESS---------SEEEEEETTTTCCCEEEEC----
T ss_pred ----CEEEEEECCCCceEEEec--C--CCcEEEEEEcCCCcEEEEECC---------CcEEEEECCCCceeEEEcc----
Confidence 358889998887664332 1 112223333344445555542 4688899877653322211
Q ss_pred CCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcce-eEEEEE-CCe
Q 005655 232 WPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG-FSMCVH-KKR 308 (685)
Q Consensus 232 ~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g-~s~~~~-~~~ 308 (685)
..... .+++.. ++.+++.|+..+. +.+||..+..- +.. ....... .++++. +++
T Consensus 1084 -~~~~v-~~~~~s~d~~~l~s~s~d~~----------------v~iwd~~~~~~--~~~---l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1084 -HQGTV-LSCAISSDATKFSSTSADKT----------------AKIWSFDLLSP--LHE---LKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp -CSSCC-CCEEECSSSSSCEEECCSSC----------------CCEECSSSSSC--SBC---CCCCSSCEEEEEECSSSS
T ss_pred -cCCcE-EEEEECCCCCEEEEEcCCCc----------------EEEEECCCcce--eee---eccCCCcEEEEEECCCCC
Confidence 11111 122222 6667777776654 45666554321 111 1111111 222332 677
Q ss_pred EEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+++.|+.. ..|.+||+.+..
T Consensus 1141 ~lat~~~d--------------g~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1141 LLATGDDN--------------GEIRIWNVSDGQ 1160 (1249)
T ss_dssp EEEEEETT--------------SCCCEEESSSSC
T ss_pred EEEEEeCC--------------CEEEEEECCCCc
Confidence 78887753 237888887654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.71 E-value=5.4 Score=41.90 Aligned_cols=68 Identities=9% Similarity=0.096 Sum_probs=39.1
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (685)
++.+++.|+.. ..+.+||+.+..-...-. .+.....-.++.+ ++.+++.|+.+ ..|
T Consensus 181 ~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d---------g~i 238 (437)
T 3gre_A 181 EKSLLVALTNL-----------SRVIIFDIRTLERLQIIE--NSPRHGAVSSICIDEECCVLILGTTR---------GII 238 (437)
T ss_dssp SCEEEEEEETT-----------SEEEEEETTTCCEEEEEE--CCGGGCCEEEEEECTTSCEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEeCCCCeeeEEEc--cCCCCCceEEEEECCCCCEEEEEcCC---------CeE
Confidence 36777777653 468899998876433222 1111112223333 56777777753 358
Q ss_pred EEEEcCCCceEE
Q 005655 212 YVFDLDQFKWQE 223 (685)
Q Consensus 212 ~~yD~~t~~W~~ 223 (685)
.+||+.+.....
T Consensus 239 ~iwd~~~~~~~~ 250 (437)
T 3gre_A 239 DIWDIRFNVLIR 250 (437)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEEcCCccEEE
Confidence 899998765433
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=92.69 E-value=10 Score=38.87 Aligned_cols=180 Identities=9% Similarity=0.066 Sum_probs=91.1
Q ss_pred EEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC-
Q 005655 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR- 180 (685)
Q Consensus 103 v~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R- 180 (685)
+|+=.-...+|+.+..+ ......+++.. ++.+|++|-. ..+++-.-.-.+|+.+.... +.+.
T Consensus 17 ~~~s~d~g~~W~~~~~~---~~~~~~~v~~~~~~~~~~~G~~------------g~i~~s~DgG~tW~~~~~~~-~~~~~ 80 (327)
T 2xbg_A 17 SAIPALDYNPWEAIQLP---TTATILDMSFIDRHHGWLVGVN------------ATLMETRDGGQTWEPRTLVL-DHSDY 80 (327)
T ss_dssp -CCCBCSSCCEEEEECS---CSSCEEEEEESSSSCEEEEETT------------TEEEEESSTTSSCEECCCCC-SCCCC
T ss_pred eeecCCCCCCceEeecC---CCCcEEEEEECCCCcEEEEcCC------------CeEEEeCCCCCCCeECCCCC-CCCCc
Confidence 33333345689988643 22333333333 4678886531 22444322345899986521 1222
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCC
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVS 259 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~ 259 (685)
.-.++....+.+|+.|.. ..|++-.=.-.+|+.+.... +.+-..+.++.. ++.+|+.|... .
T Consensus 81 ~~~~i~~~~~~~~~~g~~----------g~i~~S~DgG~tW~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~g-~-- 143 (327)
T 2xbg_A 81 RFNSVSFQGNEGWIVGEP----------PIMLHTTDGGQSWSQIPLDP----KLPGSPRLIKALGNGSAEMITNVG-A-- 143 (327)
T ss_dssp EEEEEEEETTEEEEEEET----------TEEEEESSTTSSCEECCCCT----TCSSCEEEEEEEETTEEEEEETTC-C--
T ss_pred cEEEEEecCCeEEEEECC----------CeEEEECCCCCCceECcccc----CCCCCeEEEEEECCCCEEEEeCCc-c--
Confidence 233444456788887531 12333222246899987541 111122334433 67888877421 1
Q ss_pred cccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEEC
Q 005655 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (685)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (685)
+++-.-...+|+.+... .+...+++++. .+++|++|-. ..+|.-.-
T Consensus 144 --------------v~~S~DgG~tW~~~~~~----~~~~~~~~~~~~~~~~~~~g~~---------------G~~~~S~d 190 (327)
T 2xbg_A 144 --------------IYRTKDSGKNWQALVQE----AIGVMRNLNRSPSGEYVAVSSR---------------GSFYSTWE 190 (327)
T ss_dssp --------------EEEESSTTSSEEEEECS----CCCCEEEEEECTTSCEEEEETT---------------SSEEEEEC
T ss_pred --------------EEEEcCCCCCCEEeecC----CCcceEEEEEcCCCcEEEEECC---------------CcEEEEeC
Confidence 44443346689998642 22234455544 5666666521 12444432
Q ss_pred C-CCcEEEEEe
Q 005655 339 D-NHRWYPLEL 348 (685)
Q Consensus 339 ~-t~~W~~l~~ 348 (685)
. ...|..+..
T Consensus 191 ~gG~tW~~~~~ 201 (327)
T 2xbg_A 191 PGQTAWEPHNR 201 (327)
T ss_dssp TTCSSCEEEEC
T ss_pred CCCCceeECCC
Confidence 2 568887753
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=92.61 E-value=2 Score=43.42 Aligned_cols=129 Identities=9% Similarity=-0.005 Sum_probs=63.3
Q ss_pred cEEEEEcCCCcE-EEecCCCCC-CCcceeEEEEE-C----CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccC
Q 005655 102 DLYRYDVEKQEW-KVISSPNSP-PPRSAHQAVSW-K----NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK 174 (685)
Q Consensus 102 dv~~yd~~~~~W-~~l~s~~~P-~~R~~ha~v~~-~----~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~ 174 (685)
.+.+||..+... ..+.....+ ....-.+++.. + +.+++.|+.. ..+.+||+.+..-...-.
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----------g~i~v~d~~~~~~~~~~~- 112 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR-----------GIIRIINPITMQCIKHYV- 112 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT-----------CEEEEECTTTCCEEEEEE-
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC-----------CEEEEEEchhceEeeeec-
Confidence 578888886543 233221111 11222223332 3 5677777753 358888888765432211
Q ss_pred CCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEE
Q 005655 175 GCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFL 250 (685)
Q Consensus 175 g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv 250 (685)
.. ...-.++.+ ++.+++.|+.+ ..|.+||+.+.+-...-.... .....-.+++.. ++..++
T Consensus 113 -~~--~~~i~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~ 177 (366)
T 3k26_A 113 -GH--GNAINELKFHPRDPNLLLSVSKD---------HALRLWNIQTDTLVAIFGGVE---GHRDEVLSADYDLLGEKIM 177 (366)
T ss_dssp -SC--CSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTTTEEEEEECSTT---SCSSCEEEEEECTTSSEEE
T ss_pred -CC--CCcEEEEEECCCCCCEEEEEeCC---------CeEEEEEeecCeEEEEecccc---cccCceeEEEECCCCCEEE
Confidence 01 111122233 45677777753 468899998775444321100 111112223332 566777
Q ss_pred EecccCC
Q 005655 251 YGGYSKE 257 (685)
Q Consensus 251 ~GG~~~~ 257 (685)
.|+.++.
T Consensus 178 ~~~~dg~ 184 (366)
T 3k26_A 178 SCGMDHS 184 (366)
T ss_dssp EEETTSC
T ss_pred EecCCCC
Confidence 7777654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=92.51 E-value=6.1 Score=45.44 Aligned_cols=213 Identities=12% Similarity=0.034 Sum_probs=103.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCccee-EEEEECCEEEEEcCccCCCC---CccccccC
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAH-QAVSWKNYLYIFGGEFTSPN---QERFHHYK 156 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~h-a~v~~~~~iyvfGG~~~s~~---~~~~~~~~ 156 (685)
+++.++|+... .|.. ...|+++|+.+++...... +...+ .++..+++.++++....... ........
T Consensus 173 DG~~la~~~~~-~G~e---~~~i~v~dl~tg~~~~~~~-----~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 173 DGRLLAYSVQD-GGSD---WRTVKFVGVADGKPLADEL-----KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp TSSEEEEEEEE-TTCS---EEEEEEEETTTCCEEEEEE-----EEEESCCCEESTTSEEEEEECCCC--------CCCCC
T ss_pred CCCEEEEEEcC-CCCc---eEEEEEEECCCCCCCCccC-----CCceeccEEEECCCEEEEEEecCcccccccccCCCCC
Confidence 45555555421 1221 1369999999998865421 11111 12222223333333222100 00001235
Q ss_pred eEEEEECCCCcE--EEcccCCCCC-CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC--c-eEEeccCC
Q 005655 157 DFWMLDLKTNQW--EQLNLKGCPS-PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--K-WQEIKPRF 228 (685)
Q Consensus 157 dv~~yD~~t~~W--~~~~~~g~P~-~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~-W~~v~~~~ 228 (685)
.+|++++.+..- ..+-. .+. +.. ...+.+ +++.+++....... ..+.||++|+.+. . |..+...
T Consensus 244 ~v~~~~lgt~~~~~~lv~~--~~~~~~~-~~~~~~SpDG~~l~~~~~~~~~----~~~~l~~~d~~~~~~~~~~~l~~~- 315 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFA--TPELPKR-GHGASVSSDGRWVVITSSEGTD----PVNTVHVARVTNGKIGPVTALIPD- 315 (741)
T ss_dssp EEEEEETTSCGGGCEEEEC--CTTCTTC-EEEEEECTTSCEEEEEEECTTC----SCCEEEEEEEETTEECCCEEEECS-
T ss_pred EEEEEECCCCchhCEEEec--cCCCCeE-EEEEEECCCCCEEEEEEEccCC----CcceEEEEECCCCCCcccEEecCC-
Confidence 689999877652 12211 111 122 222333 44433443322211 2468999999877 6 8888654
Q ss_pred CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC--ceeEEeecCCCCCCCcceeEEEEEC
Q 005655 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVHK 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~~~~~g~~P~~R~g~s~~~~~ 306 (685)
...... .+...++.||+...... ....++.+|+.+ ..|..+.+.. ...-.+++..+
T Consensus 316 ----~~~~~~-~~~~dg~~l~~~s~~~~-------------~~~~l~~~d~~~~~~~~~~l~~~~----~~~l~~~~~~~ 373 (741)
T 1yr2_A 316 ----LKAQWD-FVDGVGDQLWFVSGDGA-------------PLKKIVRVDLSGSTPRFDTVVPES----KDNLESVGIAG 373 (741)
T ss_dssp ----SSSCEE-EEEEETTEEEEEECTTC-------------TTCEEEEEECSSSSCEEEEEECCC----SSEEEEEEEEB
T ss_pred ----CCceEE-EEeccCCEEEEEECCCC-------------CCCEEEEEeCCCCccccEEEecCC----CCeEEEEEEEC
Confidence 122222 22345778887754321 124588999887 5798886421 11122334447
Q ss_pred CeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
+++++...... ...|+.+++....-.
T Consensus 374 ~~lv~~~~~dg------------~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 374 NRLFASYIHDA------------KSQVLAFDLDGKPAG 399 (741)
T ss_dssp TEEEEEEEETT------------EEEEEEEETTSCEEE
T ss_pred CEEEEEEEECC------------EEEEEEEeCCCCcee
Confidence 77776654432 344777776544333
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.47 E-value=1.8 Score=44.95 Aligned_cols=206 Identities=12% Similarity=0.026 Sum_probs=97.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCC----C-cEEEecCCCCCCCcceeEEEEE--CCEEEEEcCcc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK----Q-EWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEF 144 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~----~-~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~ 144 (685)
.++...| ++.+++.|+. + ..+.+|++.+ . .-..+... ...-.+++.. ++.+++.|+..
T Consensus 71 ~~~~~s~--~~~~l~~~~~--d-------g~v~vw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~~d 135 (416)
T 2pm9_A 71 NDLDWSH--NNKIIAGALD--N-------GSLELYSTNEANNAINSMARFSNH----SSSVKTVKFNAKQDNVLASGGNN 135 (416)
T ss_dssp EEEEECS--SSSCEEEEES--S-------SCEEEECCSSTTSCCCEEEECCCS----SSCCCEEEECSSSTTBEEEECSS
T ss_pred EEEEECC--CCCeEEEEcc--C-------CeEEEeecccccccccchhhccCC----ccceEEEEEcCCCCCEEEEEcCC
Confidence 3445555 5667777763 2 3578888876 2 22233221 1112233333 25677777753
Q ss_pred CCCCCccccccCeEEEEECCCCc------EEEcccCCCCCCCccceEEEE--C-CEEEEEccccCCCCceeeeceEEEEE
Q 005655 145 TSPNQERFHHYKDFWMLDLKTNQ------WEQLNLKGCPSPRSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLYVFD 215 (685)
Q Consensus 145 ~s~~~~~~~~~~dv~~yD~~t~~------W~~~~~~g~P~~Rsgh~~v~~--~-~~lyv~GG~~~~~~~~~~~~dv~~yD 215 (685)
..+.+||+.+.. -..... ...........+.+ + +.+++.|+.. ..|.+||
T Consensus 136 -----------g~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~v~iwd 194 (416)
T 2pm9_A 136 -----------GEIFIWDMNKCTESPSNYTPLTPG-QSMSSVDEVISLAWNQSLAHVFASAGSS---------NFASIWD 194 (416)
T ss_dssp -----------SCEEBCBTTTTSSCTTTCCCBCCC-CSCCSSCCCCEEEECSSCTTEEEEESSS---------SCEEEEE
T ss_pred -----------CeEEEEECCCCccccccccccccc-cccCCCCCeeEEEeCCCCCcEEEEEcCC---------CCEEEEE
Confidence 347788887764 111100 01111111122333 2 5677777753 4688999
Q ss_pred cCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCC
Q 005655 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (685)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~ 293 (685)
+.+......-............-.+++.. +..+++.|+..+. ...+.+||+.+..-. +.. ..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-------------~~~i~~~d~~~~~~~-~~~--~~ 258 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN-------------DPSILIWDLRNANTP-LQT--LN 258 (416)
T ss_dssp TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS-------------SCCCCEEETTSTTSC-SBC--CC
T ss_pred CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC-------------CceEEEEeCCCCCCC-cEE--ee
Confidence 98876544332210000001112223333 3357777776541 012567776653210 000 00
Q ss_pred -CCCcceeEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 294 -PGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 294 -P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
.....-.++++. ++.+++.|+.. +.|.+||+.+..-
T Consensus 259 ~~~~~~v~~~~~s~~~~~~l~s~~~d--------------g~v~~wd~~~~~~ 297 (416)
T 2pm9_A 259 QGHQKGILSLDWCHQDEHLLLSSGRD--------------NTVLLWNPESAEQ 297 (416)
T ss_dssp SCCSSCEEEEEECSSCSSCEEEEESS--------------SEEEEECSSSCCE
T ss_pred cCccCceeEEEeCCCCCCeEEEEeCC--------------CCEEEeeCCCCcc
Confidence 111122333333 56777777753 3488888877643
|
| >3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=10 Score=40.08 Aligned_cols=217 Identities=13% Similarity=0.169 Sum_probs=113.7
Q ss_pred CCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECC----CCc-EEEcccCCCCCCCccce
Q 005655 110 KQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK----TNQ-WEQLNLKGCPSPRSGHR 184 (685)
Q Consensus 110 ~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~----t~~-W~~~~~~g~P~~Rsgh~ 184 (685)
.+.|+...-+..|..-.-|+.|.+++.-|++|=.++.... ..+ .+..|... ... =..++.. .-..-+-.|
T Consensus 269 ~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~P---Re~-G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPC 343 (670)
T 3ju4_A 269 KSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAP---REV-GLFYFPDAFNSPSNYVRRQIPSE-YEPDASEPC 343 (670)
T ss_dssp TSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSS---CEE-EEEEETTTTTCTTCCEEEECCGG-GCTTEEEEE
T ss_pred cCCceecccccccceeeeeeeeEecCCceEEEeccCCCCc---cee-eEEEecccccCCcceeeeechhh-hccccccch
Confidence 4456655545556666789999998887888754433222 011 12222111 111 1222221 123334556
Q ss_pred EEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC---CCcc
Q 005655 185 MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE---VSTD 261 (685)
Q Consensus 185 ~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~---~~~~ 261 (685)
.-++++.||+.---... +..-..+.+-+..-..|..+..+. ....+..-++..++.|||||--... ....
T Consensus 344 vkyYdgvLyLtTRgt~~---~~~GS~L~rs~d~Gq~w~slrfp~----nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~ 416 (670)
T 3ju4_A 344 IKYYDGVLYLITRGTRG---DRLGSSLHRSRDIGQTWESLRFPH----NVHHTTLPFAKVGDDLIMFGSERAENEWEAGA 416 (670)
T ss_dssp EEEETTEEEEEEEESCT---TSCCCEEEEESSTTSSCEEEECTT----CCCSSCCCEEEETTEEEEEEECSSTTCSSTTC
T ss_pred hhhhCCEEEEEecCcCC---CCCcceeeeecccCCchhheeccc----cccccCCCcceeCCEEEEEeccccccccccCC
Confidence 67789999998543221 223456777777788899998751 2233344456679999999954221 0001
Q ss_pred cCCCCCCceeee-EEEEe-----CCCceeEEeecC---CCCCCCcceeEEEEE-CCeEE-EecceecccC---Ccc----
Q 005655 262 KNQSEKGIIHSD-LWSLD-----PRTWEWSKVKKI---GMPPGPRAGFSMCVH-KKRAL-LFGGVVDMEM---KGD---- 323 (685)
Q Consensus 262 ~~~~~~~~~~~d-v~~yd-----~~t~~W~~~~~~---g~~P~~R~g~s~~~~-~~~iy-vfGG~~~~~~---~~~---- 323 (685)
..+.-.+.+-.. +.+.+ .....|..+... |..-..-+|.+.+++ ++.|| ||||..-... ..+
T Consensus 417 pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~k~ 496 (670)
T 3ju4_A 417 PDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKD 496 (670)
T ss_dssp CCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTTCC
T ss_pred CcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccccC
Confidence 111111211111 12233 345578888653 333344556655555 67664 7898753221 011
Q ss_pred -ccccccCCcEEEEEC
Q 005655 324 -VIMSLFLNELYGFQL 338 (685)
Q Consensus 324 -~~~~~~~ndl~~yd~ 338 (685)
.-....-.+||+|-+
T Consensus 497 ~~~~~Ghp~dlY~~ri 512 (670)
T 3ju4_A 497 PFKSDGHPSDLYCYKM 512 (670)
T ss_dssp TTSTTCCCCEEEEEEE
T ss_pred ccccCCCCcceEEEEE
Confidence 112344568999875
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=92.26 E-value=3.1 Score=47.58 Aligned_cols=151 Identities=11% Similarity=0.037 Sum_probs=79.4
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc---eEEeccCCCCC
Q 005655 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPRFGSM 231 (685)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~---W~~v~~~~~~~ 231 (685)
.+.+|+++..+..|..+... .... ...+..++.||+...... ....|+++|+.+.. |..+.+..
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~--~~~~--~~~~~~~g~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~~l~~~~--- 317 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKG--VGAK--YEVHAWKDRFYVLTDEGA------PRQRVFEVDPAKPARASWKEIVPED--- 317 (695)
T ss_dssp EEEEEEECTTCSSCEEEEEC--SSCC--EEEEEETTEEEEEECTTC------TTCEEEEEBTTBCSGGGCEEEECCC---
T ss_pred ceEEEEEcCCCCceEEeecC--CCce--EEEEecCCcEEEEECCCC------CCCEEEEEeCCCCCccCCeEEecCC---
Confidence 36789998878888887652 1111 122224555666543211 13578999987755 88876541
Q ss_pred CCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE-ECCeEE
Q 005655 232 WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRAL 310 (685)
Q Consensus 232 ~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~-~~~~iy 310 (685)
+ ...-..+...++.|++.+.... ...+|.+++....-..+.. |....-.+++. -++..+
T Consensus 318 -~-~~~l~~~~~~~~~lv~~~~~dg--------------~~~l~~~~~~g~~~~~l~~----~~~~~v~~~~~s~d~~~l 377 (695)
T 2bkl_A 318 -S-SASLLSVSIVGGHLSLEYLKDA--------------TSEVRVATLKGKPVRTVQL----PGVGAASNLMGLEDLDDA 377 (695)
T ss_dssp -S-SCEEEEEEEETTEEEEEEEETT--------------EEEEEEEETTCCEEEECCC----SSSSEECCCBSCTTCSEE
T ss_pred -C-CCeEEEEEEECCEEEEEEEECC--------------EEEEEEEeCCCCeeEEecC----CCCeEEEEeecCCCCCEE
Confidence 1 1112233444888887765443 2458888876543333321 11110011111 133333
Q ss_pred EecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+|..... ..-..||.||+.+.....+..
T Consensus 378 ~~~~ss~----------~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 378 YYVFTSF----------TTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp EEEEEET----------TEEEEEEEEETTTCCEEEEEE
T ss_pred EEEEcCC----------CCCCEEEEEECCCCcEEEEec
Confidence 3333221 113569999999988766554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=92.18 E-value=5 Score=45.95 Aligned_cols=125 Identities=16% Similarity=0.110 Sum_probs=71.1
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCC---CC---CCccceEEEECCEEEEEccccC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC---PS---PRSGHRMVLYKHKIIVFGGFYD 200 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~---P~---~Rsgh~~v~~~~~lyv~GG~~~ 200 (685)
+-++.++.||+.... +.|+.||..|++ |+.-..... +. .....+.++.++.||+...
T Consensus 72 ~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~--- 136 (677)
T 1kb0_A 72 TPVVVDGIMYVSASW------------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--- 136 (677)
T ss_dssp CCEEETTEEEEECGG------------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---
T ss_pred CCEEECCEEEEECCC------------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC---
Confidence 345679999998652 468899998875 886543110 00 0122345667888888633
Q ss_pred CCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEe
Q 005655 201 TLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (685)
-..|+++|..+.+ |+.-..... ........+.++.++.||+..+.... .....++.||
T Consensus 137 -------dg~l~alD~~tG~~~W~~~~~~~~--~~~~~~~~~p~v~~~~v~v~~~~~~~-----------~~~g~v~a~D 196 (677)
T 1kb0_A 137 -------DGRLIALDAATGKEVWHQNTFEGQ--KGSLTITGAPRVFKGKVIIGNGGAEY-----------GVRGYITAYD 196 (677)
T ss_dssp -------TSEEEEEETTTCCEEEEEETTTTC--CSSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEE
T ss_pred -------CCEEEEEECCCCCEEeeecCCcCc--CcCcccccCcEEECCEEEEEeccccc-----------CCCCEEEEEE
Confidence 2468999998764 876533100 00011222334557877765432110 1234588999
Q ss_pred CCCc--eeEEee
Q 005655 279 PRTW--EWSKVK 288 (685)
Q Consensus 279 ~~t~--~W~~~~ 288 (685)
+.+. .|+.-.
T Consensus 197 ~~tG~~~W~~~~ 208 (677)
T 1kb0_A 197 AETGERKWRWFS 208 (677)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEecc
Confidence 8765 587754
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=5.7 Score=45.40 Aligned_cols=128 Identities=9% Similarity=0.054 Sum_probs=72.4
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCC------C--cEEEecCCCCCCCcceeEEEEECCEEEEEcC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK------Q--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~------~--~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG 142 (685)
..+....| +++.++++... ... ..+++|++|+.+ . .++.+.... ......+...++.||+.+.
T Consensus 235 ~~~~~~Sp--Dg~~l~~~~~~-~~~---~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 235 MGGAELSD--DGRYVLLSIRE-GCD---PVNRLWYCDLQQESNGITGILKWVKLIDNF---EGEYDYVTNEGTVFTFKTN 305 (710)
T ss_dssp EEEEEECT--TSCEEEEEEEC-SSS---SCCEEEEEEGGGSSSSSCSSCCCEEEECSS---SSCEEEEEEETTEEEEEEC
T ss_pred EEEEEEcC--CCCEEEEEEEc-cCC---CccEEEEEECcccccccCCccceEEeeCCC---CcEEEEEeccCCEEEEEEC
Confidence 34555666 45544444321 111 146899999876 4 688876532 1112222334678888865
Q ss_pred ccCCCCCccccccCeEEEEECCCC---cEEEcccCCCCCCC-ccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 143 EFTSPNQERFHHYKDFWMLDLKTN---QWEQLNLKGCPSPR-SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~t~---~W~~~~~~g~P~~R-sgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
... ....++++|+.+. .|+.+.+ +... .-..++.. +++|++.....+ ...|+++|+.
T Consensus 306 ~~~--------~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~lv~~~~~~g-------~~~l~~~~~~ 367 (710)
T 2xdw_A 306 RHS--------PNYRLINIDFTDPEESKWKVLVP---EHEKDVLEWVACVRSNFLVLCYLHDV-------KNTLQLHDLA 367 (710)
T ss_dssp TTC--------TTCEEEEEETTSCCGGGCEEEEC---CCSSCEEEEEEEETTTEEEEEEEETT-------EEEEEEEETT
T ss_pred CCC--------CCCEEEEEeCCCCCcccceeccC---CCCCCeEEEEEEEcCCEEEEEEEECC-------EEEEEEEECC
Confidence 422 1357999999876 5888765 2221 22233444 677777665432 4578999986
Q ss_pred CCc-eEEec
Q 005655 218 QFK-WQEIK 225 (685)
Q Consensus 218 t~~-W~~v~ 225 (685)
+.+ ...+.
T Consensus 368 ~g~~~~~l~ 376 (710)
T 2xdw_A 368 TGALLKIFP 376 (710)
T ss_dssp TCCEEEEEC
T ss_pred CCCEEEecC
Confidence 554 34443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.11 E-value=8.4 Score=44.18 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=70.5
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCC---CC---CCccceEEEECCEEEEEccccC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC---PS---PRSGHRMVLYKHKIIVFGGFYD 200 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~---P~---~Rsgh~~v~~~~~lyv~GG~~~ 200 (685)
+-++.++.||+.+.. +.++.||..|++ |+.-..... +. .....+.++.++.||+.+.
T Consensus 65 ~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~--- 129 (689)
T 1yiq_A 65 TPIVVDGVMYTTGPF------------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL--- 129 (689)
T ss_dssp CCEEETTEEEEECGG------------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---
T ss_pred cCEEECCEEEEEcCC------------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---
Confidence 345679999997642 458899998874 886432110 00 0112234667888887542
Q ss_pred CCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEe
Q 005655 201 TLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (685)
-..|+.+|..|.+ |+.-..... . .......+.++.++.||+-.+.... .....++.||
T Consensus 130 -------dg~l~AlDa~TG~~~W~~~~~~~~-~-~~~~~~~sP~v~~g~v~vg~~~~~~-----------~~~g~v~a~D 189 (689)
T 1yiq_A 130 -------DGRLEAIDAKTGQRAWSVDTRADH-K-RSYTITGAPRVVNGKVVIGNGGAEF-----------GVRGYVTAYD 189 (689)
T ss_dssp -------TSEEEEEETTTCCEEEEEECCSCT-T-SCCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEE
T ss_pred -------CCEEEEEECCCCCEeeeecCcCCC-C-CCccccCCcEEECCEEEEEeCCCcc-----------CCCCEEEEEE
Confidence 2468999998764 876543100 0 1112222334568888774322110 1234589999
Q ss_pred CCCc--eeEEee
Q 005655 279 PRTW--EWSKVK 288 (685)
Q Consensus 279 ~~t~--~W~~~~ 288 (685)
+.+. .|+.-.
T Consensus 190 ~~tG~~~W~~~~ 201 (689)
T 1yiq_A 190 AETGKEAWRFYT 201 (689)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEecc
Confidence 8765 588753
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.04 E-value=9.7 Score=37.26 Aligned_cols=106 Identities=9% Similarity=0.073 Sum_probs=56.2
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~ 268 (685)
++. ++.|+.. ..+.+||+.+.+-...-.. ....-.+++...+..++.|+..+.
T Consensus 195 ~~~-~~~~~~d---------g~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~l~~~~~dg~----------- 247 (313)
T 3odt_A 195 DGH-FISCSND---------GLIKLVDMHTGDVLRTYEG------HESFVYCIKLLPNGDIVSCGEDRT----------- 247 (313)
T ss_dssp TTE-EEEEETT---------SEEEEEETTTCCEEEEEEC------CSSCEEEEEECTTSCEEEEETTSE-----------
T ss_pred CCe-EEEccCC---------CeEEEEECCchhhhhhhhc------CCceEEEEEEecCCCEEEEecCCE-----------
Confidence 566 6666642 4688999887643322111 111122333332224667776554
Q ss_pred ceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
+.+||+.+......-.. +.. .-.++++. +++ ++.|+.. +.|.+||+.+.+|..
T Consensus 248 -----v~iwd~~~~~~~~~~~~---~~~-~i~~~~~~~~~~-~~~~~~d--------------g~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 248 -----VRIWSKENGSLKQVITL---PAI-SIWSVDCMSNGD-IIVGSSD--------------NLVRIFSQEKSRWAS 301 (313)
T ss_dssp -----EEEECTTTCCEEEEEEC---SSS-CEEEEEECTTSC-EEEEETT--------------SCEEEEESCGGGCCC
T ss_pred -----EEEEECCCCceeEEEec---cCc-eEEEEEEccCCC-EEEEeCC--------------CcEEEEeCCCCceee
Confidence 78888877754443321 111 12334444 455 4556542 459999998876653
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=91.99 E-value=5.1 Score=38.31 Aligned_cols=145 Identities=17% Similarity=0.361 Sum_probs=78.0
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCC--CcEE--EecC--CCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWK--VISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~--~~W~--~l~s--~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~ 152 (685)
++++|+|=|. .+|+|+... .... .+.. +.+|. .--|+... ++++|+|-|
T Consensus 16 ~g~~yfFkg~-----------~~Wr~~~~~~~~~~~p~~Is~~w~glP~--~IDAa~~~~~~~~~yfFkG---------- 72 (195)
T 1itv_A 16 GNQLYLFKDG-----------KYWRFSEGRGSRPQGPFLIADKWPALPR--KLDSVFEEPLSKKLFFFSG---------- 72 (195)
T ss_dssp TTEEEEEETT-----------EEEEECCSSSCCCEEEEEHHHHCTTSCS--SCSEEEECTTTCCEEEEET----------
T ss_pred CCEEEEEECC-----------EEEEEECCccccCCCcEEhhhccCCCCC--CccEEEEECCCCeEEEEeC----------
Confidence 6889999883 467777654 2222 1211 22232 22333333 578999988
Q ss_pred cccCeEEEEECCCCcE-EEcccCCCCCC--CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE-----Ee
Q 005655 153 HHYKDFWMLDLKTNQW-EQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-----EI 224 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~W-~~~~~~g~P~~--Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-----~v 224 (685)
+.+|+|+..+..- ..|..-|+|.. ....++...++++|+|-| +..|+||..+.+-. .+
T Consensus 73 ---~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-----------~~ywr~d~~~~~~~~gyPr~i 138 (195)
T 1itv_A 73 ---RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-----------RRLWRFDVKAQMVDPRSASEV 138 (195)
T ss_dssp ---TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-----------TEEEEEETTTTEECGGGCEEH
T ss_pred ---CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-----------CEEEEEeCCcccccCCCccCh
Confidence 4688888643211 11222244543 333333322679999977 45799998765311 11
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 225 ~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
...-.+ +|. .-.++...++.+|+|-|.. .|+||..+.+
T Consensus 139 ~~~w~G-vp~--~idaa~~~~g~~Yffkg~~------------------y~~~~~~~~~ 176 (195)
T 1itv_A 139 DRMFPG-VPL--DTHDVFQFREKAYFCQDRF------------------YWRVSSRSEL 176 (195)
T ss_dssp HHHSTT-SCS--SCSEEEEETTEEEEEETTE------------------EEEEECCTTC
T ss_pred hhcCCC-CCC--CCCEEEEeCCeEEEEeCCE------------------EEEEECCccE
Confidence 100001 121 1223444478999997642 7788876654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=91.68 E-value=4.8 Score=40.47 Aligned_cols=215 Identities=9% Similarity=-0.038 Sum_probs=104.1
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCC
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~ 148 (685)
...+.+..|. ++.||+.+-. .+.+++|++ +.....+..+ .. ..++++.. ++.||+....
T Consensus 46 ~~egp~~~~~-g~~l~~~d~~---------~~~i~~~~~-~g~~~~~~~~---~~-~~~gl~~d~dG~l~v~~~~----- 105 (305)
T 3dr2_A 46 WSEGPAWWEA-QRTLVWSDLV---------GRRVLGWRE-DGTVDVLLDA---TA-FTNGNAVDAQQRLVHCEHG----- 105 (305)
T ss_dssp SEEEEEEEGG-GTEEEEEETT---------TTEEEEEET-TSCEEEEEES---CS-CEEEEEECTTSCEEEEETT-----
T ss_pred CccCCeEeCC-CCEEEEEECC---------CCEEEEEeC-CCCEEEEeCC---CC-ccceeeECCCCCEEEEECC-----
Confidence 3445666662 3457777642 146889998 4555544321 11 12333333 5778876321
Q ss_pred CccccccCeEEEEECCCCcEEEcccCC--CCCCCccceEEEE-CCEEEEE----ccccC---C-CCceeeeceEEEEEcC
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKG--CPSPRSGHRMVLY-KHKIIVF----GGFYD---T-LREVRYYNDLYVFDLD 217 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g--~P~~Rsgh~~v~~-~~~lyv~----GG~~~---~-~~~~~~~~dv~~yD~~ 217 (685)
.+.+++|++. ++.+.+.... .+..+.. .+++- ++.||+. |-... . .........|++||+.
T Consensus 106 ------~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~-~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 106 ------RRAITRSDAD-GQAHLLVGRYAGKRLNSPN-DLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp ------TTEEEEECTT-SCEEEEECEETTEECSCCC-CEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred ------CCEEEEECCC-CCEEEEEeccCCCccCCCC-CEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 1468889886 6666654311 1111112 23333 6788884 33211 0 0000113579999998
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC
Q 005655 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG 295 (685)
Q Consensus 218 t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~ 295 (685)
+.++..+. . . ..+ .+++.. +..||+....... .....+++|++..............+.
T Consensus 178 ~g~~~~~~-~--~--~~p---~gl~~spdg~~lyv~~~~~~~-----------~~~~~i~~~~~~~~~l~~~~~~~~~~~ 238 (305)
T 3dr2_A 178 GSPLQRMA-D--L--DHP---NGLAFSPDEQTLYVSQTPEQG-----------HGSVEITAFAWRDGALHDRRHFASVPD 238 (305)
T ss_dssp SCCCEEEE-E--E--SSE---EEEEECTTSSEEEEEECCC--------------CCCEEEEEEEETTEEEEEEEEECCSS
T ss_pred CCcEEEEe-c--C--CCC---cceEEcCCCCEEEEEecCCcC-----------CCCCEEEEEEecCCCccCCeEEEECCC
Confidence 88887765 2 0 111 223333 4457776432110 012358888876544222111000010
Q ss_pred CcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 296 PRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 296 ~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
..-.++++- +++||+..+ +.|++|++.......+..
T Consensus 239 -~~pdgi~~d~~G~lwv~~~----------------~gv~~~~~~g~~~~~~~~ 275 (305)
T 3dr2_A 239 -GLPDGFCVDRGGWLWSSSG----------------TGVCVFDSDGQLLGHIPT 275 (305)
T ss_dssp -SCCCSEEECTTSCEEECCS----------------SEEEEECTTSCEEEEEEC
T ss_pred -CCCCeEEECCCCCEEEecC----------------CcEEEECCCCCEEEEEEC
Confidence 011123333 566776542 238999997666555554
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=91.66 E-value=6.3 Score=39.16 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=54.1
Q ss_pred ccEEEEEcCCCcEEE-ecCCCCCCCc-ceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC
Q 005655 101 GDLYRYDVEKQEWKV-ISSPNSPPPR-SAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC 176 (685)
Q Consensus 101 ndv~~yd~~~~~W~~-l~s~~~P~~R-~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~ 176 (685)
+.|++||+.+.+... +.... .. .-+.+++. + ..+|+.++. -..+++||+.+..-...-..+.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~v~~~~-----------~~~v~~~d~~~~~~~~~~~~~~ 76 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIAD---AGPTPMVPMVAPGGRIAYATVNK-----------SESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTT---CTTCCCCEEECTTSSEEEEEETT-----------TTEEEEEETTTCCEEEEEECCB
T ss_pred CeEEEEECCCCcEEEEEEcCC---CCCCccceEEcCCCCEEEEEeCC-----------CCeEEEEECCCCCeEeeEEcCC
Confidence 468999998876543 22211 10 11233333 3 477877642 2469999998887543222111
Q ss_pred CC--CCccceEEEE-C-CEEEEEccccCCCCceee---eceEEEEEcCCCceEE
Q 005655 177 PS--PRSGHRMVLY-K-HKIIVFGGFYDTLREVRY---YNDLYVFDLDQFKWQE 223 (685)
Q Consensus 177 P~--~Rsgh~~v~~-~-~~lyv~GG~~~~~~~~~~---~~dv~~yD~~t~~W~~ 223 (685)
+. ...-+.+++. + ++||+......... ..+ ...|++||+.+.+...
T Consensus 77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~-~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 77 PEERVKSLFGAALSPDGKTLAIYESPVRLEL-THFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECS-SCEEECCCEEEEEETTTTEEEE
T ss_pred cccccccccceEECCCCCEEEEEeccccccc-ccccccCceEEEEECCCCcEEE
Confidence 10 0011233333 3 46776642110000 011 3689999998876543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.61 E-value=7 Score=44.37 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=29.0
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
..+.+||+.+..-...-. .... .-.++.+ ++.+++.||.+ ..|.+||+.+.+
T Consensus 541 ~~v~vwd~~~~~~~~~~~--~h~~--~v~~v~~spdg~~l~sg~~D---------g~i~iwd~~~~~ 594 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLA--GHTG--YVSTVAVSPDGSLCASGGKD---------GVVLLWDLAEGK 594 (694)
T ss_dssp SCEEEEETTTCCEEEEEC--CCSS--CEEEEEECTTSSEEEEEETT---------SBCEEEETTTTE
T ss_pred CeEEEEECCCCcEEEEEc--CCCC--CEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCc
Confidence 347788887765433211 1111 1122333 56777777753 357788887764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=91.60 E-value=8 Score=44.14 Aligned_cols=124 Identities=13% Similarity=0.066 Sum_probs=70.6
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCCC------CCCccceEEEECCEEEEEccccC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP------SPRSGHRMVLYKHKIIVFGGFYD 200 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P------~~Rsgh~~v~~~~~lyv~GG~~~ 200 (685)
+-++.++.||+.... +.++.||..|++ |+.-...... ......+.++.+++||+...
T Consensus 61 ~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--- 125 (668)
T 1kv9_A 61 TPLFHDGVIYTSMSW------------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--- 125 (668)
T ss_dssp CCEEETTEEEEEEGG------------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---
T ss_pred CCEEECCEEEEECCC------------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---
Confidence 345679999997642 468899988774 8864321100 00112234567888887542
Q ss_pred CCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEe
Q 005655 201 TLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (685)
...|+.||..+.+ |+.-...+. .......+.++.++.||+..+.... .....++.||
T Consensus 126 -------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~~~v~vg~~~~~~-----------~~~g~v~a~D 184 (668)
T 1kv9_A 126 -------DGRLIALDAKTGKAIWSQQTTDPA---KPYSITGAPRVVKGKVIIGNGGAEY-----------GVRGFVSAYD 184 (668)
T ss_dssp -------TSEEEEEETTTCCEEEEEECSCTT---SSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEE
T ss_pred -------CCEEEEEECCCCCEeeeeccCCCC---CcceecCCCEEECCEEEEeCCCCCc-----------CCCCEEEEEE
Confidence 2468999988764 876543210 1112222334568877764322110 1234589999
Q ss_pred CCCc--eeEEee
Q 005655 279 PRTW--EWSKVK 288 (685)
Q Consensus 279 ~~t~--~W~~~~ 288 (685)
+.+. .|+.-.
T Consensus 185 ~~tG~~~W~~~~ 196 (668)
T 1kv9_A 185 ADTGKLAWRFYT 196 (668)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEecc
Confidence 8765 688754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.60 E-value=4.1 Score=41.57 Aligned_cols=104 Identities=4% Similarity=-0.113 Sum_probs=57.2
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~ 267 (685)
.+.+++.|+.+ ..+.+||+.+..-..+... .....-.+++.. ++.+++.|+.++.
T Consensus 138 ~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~-----~~~~~i~~~~~~pdg~~lasg~~dg~---------- 193 (343)
T 3lrv_A 138 NTEYFIWADNR---------GTIGFQSYEDDSQYIVHSA-----KSDVEYSSGVLHKDSLLLALYSPDGI---------- 193 (343)
T ss_dssp -CCEEEEEETT---------CCEEEEESSSSCEEEEECC-----CSSCCCCEEEECTTSCEEEEECTTSC----------
T ss_pred CCCEEEEEeCC---------CcEEEEECCCCcEEEEEec-----CCCCceEEEEECCCCCEEEEEcCCCE----------
Confidence 45566767753 3688999988776444322 111112233333 6778888887765
Q ss_pred CceeeeEEEEeCCCceeE--EeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 268 GIIHSDLWSLDPRTWEWS--KVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~--~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
+.+||+.+..-. .+.. .....-.++++. ++..++.|+ . +.|.+||+.+.
T Consensus 194 ------i~iwd~~~~~~~~~~~~~----~h~~~v~~l~fs~~g~~l~s~~-~--------------~~v~iwd~~~~ 245 (343)
T 3lrv_A 194 ------LDVYNLSSPDQASSRFPV----DEEAKIKEVKFADNGYWMVVEC-D--------------QTVVCFDLRKD 245 (343)
T ss_dssp ------EEEEESSCTTSCCEECCC----CTTSCEEEEEECTTSSEEEEEE-S--------------SBEEEEETTSS
T ss_pred ------EEEEECCCCCCCccEEec----cCCCCEEEEEEeCCCCEEEEEe-C--------------CeEEEEEcCCC
Confidence 778888765432 1111 011112233333 566666666 2 24889998654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=3.6 Score=50.10 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=71.6
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~ 150 (685)
++++.| ++.+++.||. + +.+.+||+.+.+-...-... ...-.++.+ ++.+++.||..
T Consensus 620 ~~~~s~--~~~~l~s~~~--d-------~~i~vw~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~d------ 678 (1249)
T 3sfz_A 620 HACFSQ--DGQRIASCGA--D-------KTLQVFKAETGEKLLDIKAH----EDEVLCCAFSSDDSYIATCSAD------ 678 (1249)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEECC--CCCEEEEEeC--C-------CeEEEEECCCCCEEEEeccC----CCCEEEEEEecCCCEEEEEeCC------
Confidence 445555 5677777772 2 36889999887654322211 111222333 45666777642
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE----CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
..+.+||+.++.....-. .......++.+ ++.+++.|+.+ ..|.+||+.+......-.
T Consensus 679 -----~~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~sg~~d---------~~v~vwd~~~~~~~~~~~ 740 (1249)
T 3sfz_A 679 -----KKVKIWDSATGKLVHTYD----EHSEQVNCCHFTNKSNHLLLATGSND---------FFLKLWDLNQKECRNTMF 740 (1249)
T ss_dssp -----SEEEEEETTTCCEEEEEE----CCSSCEEEEEECSSSSCCEEEEEETT---------SCEEEEETTSSSEEEEEC
T ss_pred -----CeEEEEECCCCceEEEEc----CCCCcEEEEEEecCCCceEEEEEeCC---------CeEEEEECCCcchhheec
Confidence 458899998876543222 11112222333 23455555532 458889988776443322
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 227 ~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
. . ..+ -.+++.. ++.+++.|+.++.
T Consensus 741 ~--h--~~~--v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 741 G--H--TNS--VNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp C--C--SSC--EEEEEECSSTTEEEEEESSSE
T ss_pred C--C--CCC--EEEEEEecCCCEEEEEECCCe
Confidence 1 0 111 1122222 5667777776554
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.53 E-value=1.9 Score=43.64 Aligned_cols=93 Identities=11% Similarity=0.092 Sum_probs=47.0
Q ss_pred cEEEEEcCCCc--EEEecCCCCCCCcceeEEEE-----ECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccC
Q 005655 102 DLYRYDVEKQE--WKVISSPNSPPPRSAHQAVS-----WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK 174 (685)
Q Consensus 102 dv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~-----~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~ 174 (685)
.+.+||+.+.. ...+........+.-.+++. .++.+++.|+.. ..+.+||+.+..-.....
T Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~- 207 (357)
T 3i2n_A 140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-----------GDIKLFDLRNMALRWETN- 207 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-----------SEEEEEETTTTEEEEEEE-
T ss_pred eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-----------CeEEEEECccCceeeecC-
Confidence 57888887764 33443322111222233331 246666666642 458899998876533322
Q ss_pred CCCCCCccceEEEE----CCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 175 GCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 175 g~P~~Rsgh~~v~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
.. ..-.+++.. ++.+++.|+.. ..+.+||+.+
T Consensus 208 -~~--~~v~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~ 243 (357)
T 3i2n_A 208 -IK--NGVCSLEFDRKDISMNKLVATSLE---------GKFHVFDMRT 243 (357)
T ss_dssp -CS--SCEEEEEESCSSSSCCEEEEEEST---------TEEEEEEEEE
T ss_pred -CC--CceEEEEcCCCCCCCCEEEEECCC---------CeEEEEeCcC
Confidence 11 112223332 45666666643 3566777654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=91.41 E-value=5.6 Score=39.63 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=37.1
Q ss_pred CEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC--ceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCc
Q 005655 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKG 322 (685)
Q Consensus 246 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~ 322 (685)
+.+++.|+.++. +.++|+.+ ..|........ .....-.+++.. ++.+++.||..
T Consensus 219 ~~~las~s~D~~----------------v~iWd~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~las~~~D------ 275 (297)
T 2pm7_B 219 RSYMASVSQDRT----------------CIIWTQDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGD------ 275 (297)
T ss_dssp SEEEEEEETTSC----------------EEEEEESSTTSCCEEEESSSS-CCSSCEEEEEECSSSCCEEEEETT------
T ss_pred ceEEEEEECCCc----------------EEEEEeCCCCCccceeeeecc-cCCCcEEEEEECCCCCEEEEEcCC------
Confidence 478888887765 45555443 44654322100 111222333333 56777777653
Q ss_pred cccccccCCcEEEEECC-CCcEEEEEe
Q 005655 323 DVIMSLFLNELYGFQLD-NHRWYPLEL 348 (685)
Q Consensus 323 ~~~~~~~~ndl~~yd~~-t~~W~~l~~ 348 (685)
+.|.+|++. ...|..+..
T Consensus 276 --------~~v~lw~~~~~g~w~~~~~ 294 (297)
T 2pm7_B 276 --------NKVTLWKENLEGKWEPAGE 294 (297)
T ss_dssp --------SCEEEEEECTTSCEEEC--
T ss_pred --------CcEEEEEECCCCcEEeccc
Confidence 236777765 457876643
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=91.23 E-value=8.1 Score=44.41 Aligned_cols=127 Identities=9% Similarity=0.057 Sum_probs=71.6
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC--c-EEEecCCCCCCCcceeEEEEECCEEEEEcCccCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--E-WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSP 147 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~-W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~ 147 (685)
..+....| +++.++|.... +. ...+++|++|+.+. . |+.+.... ... ...+...++.||+......
T Consensus 270 ~~~~~~Sp--DG~~l~~~~~~--~~--~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~-~~~~~~dg~~l~~~s~~~~-- 338 (741)
T 1yr2_A 270 GHGASVSS--DGRWVVITSSE--GT--DPVNTVHVARVTNGKIGPVTALIPDL--KAQ-WDFVDGVGDQLWFVSGDGA-- 338 (741)
T ss_dssp EEEEEECT--TSCEEEEEEEC--TT--CSCCEEEEEEEETTEECCCEEEECSS--SSC-EEEEEEETTEEEEEECTTC--
T ss_pred EEEEEECC--CCCEEEEEEEc--cC--CCcceEEEEECCCCCCcccEEecCCC--Cce-EEEEeccCCEEEEEECCCC--
Confidence 44555565 55544444321 10 12468999999887 7 88886532 111 1222234677877754321
Q ss_pred CCccccccCeEEEEECCC--CcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 148 NQERFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t--~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
....++++|+.+ ..|..+.+. ... .-..+...+++|++....++ ...||++++....-..+
T Consensus 339 ------~~~~l~~~d~~~~~~~~~~l~~~--~~~-~l~~~~~~~~~lv~~~~~dg-------~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 339 ------PLKKIVRVDLSGSTPRFDTVVPE--SKD-NLESVGIAGNRLFASYIHDA-------KSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp ------TTCEEEEEECSSSSCEEEEEECC--CSS-EEEEEEEEBTEEEEEEEETT-------EEEEEEEETTSCEEEEC
T ss_pred ------CCCEEEEEeCCCCccccEEEecC--CCC-eEEEEEEECCEEEEEEEECC-------EEEEEEEeCCCCceeec
Confidence 125699999988 579887652 111 11123334778877765432 45789999755434444
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=91.20 E-value=2.4 Score=47.00 Aligned_cols=96 Identities=8% Similarity=-0.062 Sum_probs=54.6
Q ss_pred EEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCcc
Q 005655 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG 182 (685)
Q Consensus 103 v~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsg 182 (685)
+.+||+.+...+.+.... . ...+..-+++.+++++..... ...+|++|+.++.+..+.. .+ ..
T Consensus 134 ~~l~d~~~g~~~~l~~~~--~---~~~~~spDG~~la~~~~~~~~-------~~~i~~~d~~~g~~~~l~~--~~-~~-- 196 (582)
T 3o4h_A 134 VALYALDGGGLRELARLP--G---FGFVSDIRGDLIAGLGFFGGG-------RVSLFTSNLSSGGLRVFDS--GE-GS-- 196 (582)
T ss_dssp EEEEEEETTEEEEEEEES--S---CEEEEEEETTEEEEEEEEETT-------EEEEEEEETTTCCCEEECC--SS-CE--
T ss_pred ceEEEccCCcEEEeecCC--C---ceEEECCCCCEEEEEEEcCCC-------CeEEEEEcCCCCCceEeec--CC-Cc--
Confidence 447788888877776422 2 112222345555555543221 2459999999999887754 11 11
Q ss_pred ceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceE
Q 005655 183 HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 183 h~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (685)
.....+ +++.++.+...+ ...|+++|+.+....
T Consensus 197 ~~~~~~SpDG~~l~~~~~~~-------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 197 FSSASISPGMKVTAGLETAR-------EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEEEECTTSCEEEEEECSS-------CEEEEEECTTTCCEE
T ss_pred cccceECCCCCEEEEccCCC-------eeEEEEEcCCCCcEE
Confidence 123333 454444333211 247999999998877
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=9.7 Score=42.57 Aligned_cols=125 Identities=12% Similarity=0.159 Sum_probs=69.9
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEEC-CCCc--EEEcccCCC---CCC---CccceEEEECCEEEEEcccc
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTNQ--WEQLNLKGC---PSP---RSGHRMVLYKHKIIVFGGFY 199 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~-~t~~--W~~~~~~g~---P~~---Rsgh~~v~~~~~lyv~GG~~ 199 (685)
+-++.++.||+.... .+.++.||. .|++ |+.-..... +.. ....+.++.++.||+...
T Consensus 57 ~P~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-- 123 (571)
T 2ad6_A 57 APLVIGDMMYVHSAF-----------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-- 123 (571)
T ss_dssp CCEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT--
T ss_pred ccEEECCEEEEEeCC-----------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC--
Confidence 345679999998652 146899999 7764 886433110 000 112235667888888643
Q ss_pred CCCCceeeeceEEEEEcCCC--ceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEE
Q 005655 200 DTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL 277 (685)
Q Consensus 200 ~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y 277 (685)
...|+++|..+. .|+.-..... .......+.++.++.||+-.+.... .....++.|
T Consensus 124 --------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~g~v~vg~~~~~~-----------~~~g~v~a~ 181 (571)
T 2ad6_A 124 --------NGHLLALDAKTGKINWEVEVCDPK---VGSTLTQAPFVAKDTVLMGCSGAEL-----------GVRGAVNAF 181 (571)
T ss_dssp --------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEEECBCGGG-----------TCCCEEEEE
T ss_pred --------CCEEEEEECCCCCEEEEecCCCCC---ccceeccCCEEECCEEEEEecCCcc-----------CCCCEEEEE
Confidence 246899999876 4875432100 0001122234458887765432110 112358899
Q ss_pred eCCCc--eeEEee
Q 005655 278 DPRTW--EWSKVK 288 (685)
Q Consensus 278 d~~t~--~W~~~~ 288 (685)
|+.+. .|+.-.
T Consensus 182 D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 182 DLKTGELKWRAFA 194 (571)
T ss_dssp ETTTCCEEEEEES
T ss_pred ECCCCcEEEEEcc
Confidence 98754 687653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=91.12 E-value=3.3 Score=42.65 Aligned_cols=205 Identities=14% Similarity=0.111 Sum_probs=96.9
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
..++++|+.+.+-..+.... .+..+....- ++..++|....... .....+|.+|+.+.....+.. .+..
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~---~~~~~~~~sp~dg~~l~~~~~~~~~-----~~~~~l~~~d~~~~~~~~l~~--~~~~ 237 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQEN---QWLGHPIYRPYDDSTVAFCHEGPHD-----LVDARMWLINEDGTNMRKVKT--HAEG 237 (388)
T ss_dssp EEEEEEETTTCCEEEEEEES---SCEEEEEEETTEEEEEEEEECSCTT-----TSSCSEEEEETTSCCCEESCC--CCTT
T ss_pred ceEEEEECCCCceEEeecCC---ccccccEECCCCCCEEEEEEecCCC-----CCcceEEEEeCCCCceEEeee--CCCC
Confidence 57999999998877765421 2223333332 34444443322110 123589999998887776654 1111
Q ss_pred CccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCC-CCccceeEEEeCCEEEEEe----
Q 005655 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP-SPRSGFQFFVYQDEVFLYG---- 252 (685)
Q Consensus 180 Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P-~~Rs~~s~~~~~~~Iyv~G---- 252 (685)
. ......+ +++.++|....... ....|+++|+.+.+-..+...+..... ....+..+...+..|++..
T Consensus 238 ~-~~~~~~~spdg~~l~~~~~~~~~----~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 312 (388)
T 3pe7_A 238 E-SCTHEFWVPDGSALVYVSYLKGS----PDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS 312 (388)
T ss_dssp E-EEEEEEECTTSSCEEEEEEETTC----CCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--------
T ss_pred c-ccccceECCCCCEEEEEecCCCC----CcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecc
Confidence 1 1112234 45433333322111 113599999999887776554210000 0001112222233333321
Q ss_pred cccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC----Cc--ceeEEEEE-CCeEEEecceecccCCcccc
Q 005655 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG----PR--AGFSMCVH-KKRALLFGGVVDMEMKGDVI 325 (685)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~----~R--~g~s~~~~-~~~iyvfGG~~~~~~~~~~~ 325 (685)
|+.. .-...++++|+.+.....+........ .+ ...+.+.. +++.++|....+
T Consensus 313 ~~~~------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-------- 372 (388)
T 3pe7_A 313 GYKI------------ENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-------- 372 (388)
T ss_dssp ----------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT--------
T ss_pred cccc------------CCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC--------
Confidence 1110 112469999999888777754321000 00 11222222 565555544321
Q ss_pred ccccCCcEEEEECCCCcE
Q 005655 326 MSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 326 ~~~~~ndl~~yd~~t~~W 343 (685)
-...||.+++....|
T Consensus 373 ---g~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 373 ---GKPALYLATLPESVW 387 (388)
T ss_dssp ---SSCEEEEEECCGGGG
T ss_pred ---CceeEEEEECChhcc
Confidence 135699999877665
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=91.08 E-value=5.4 Score=41.47 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=71.6
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccc-eEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCC--ceEEeccCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGH-RMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFG 229 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh-~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~ 229 (685)
..+.+||+.++.-...-....+...... ..+.+ ++.+++.||.+ ..|.+||+... .-..+...
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D---------~~v~~wd~~~~~~~~~~~~~h-- 248 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD---------TTVRLWDLRITSRAVRTYHGH-- 248 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT---------SCEEEEETTTTCCCCEEECCC--
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC---------CeEEEEECCCCCcceEEECCc--
Confidence 3477889888765443221112222111 12222 56788888864 35778887532 11111111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCC--CCCc-ceeEEEEE
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP--PGPR-AGFSMCVH 305 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~--P~~R-~g~s~~~~ 305 (685)
..+ -.+++.. ++..++.|+.++. +.++|+.+..-...-..... .... .-.++++.
T Consensus 249 ---~~~--v~~v~~~p~~~~l~s~s~D~~----------------i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 249 ---EGD--INSVKFFPDGQRFGTGSDDGT----------------CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp ---SSC--CCEEEECTTSSEEEEECSSSC----------------EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred ---CCC--eEEEEEecCCCeEEEEcCCCe----------------EEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence 001 1122333 6677888887765 77888877654333211100 0001 11233333
Q ss_pred -CCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
++++++.|+.. ..|++||+.+..-
T Consensus 308 ~~g~~l~~g~~d--------------g~i~vwd~~~~~~ 332 (380)
T 3iz6_a 308 ISGRLLFAGYSN--------------GDCYVWDTLLAEM 332 (380)
T ss_dssp SSSSEEEEECTT--------------SCEEEEETTTCCE
T ss_pred CCCCEEEEEECC--------------CCEEEEECCCCce
Confidence 67777777643 3599999876543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=90.77 E-value=16 Score=40.24 Aligned_cols=138 Identities=9% Similarity=0.023 Sum_probs=71.1
Q ss_pred CeEEEEEC--CCCcEEEcccCCCCCCCccceEEEEC-CEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 156 KDFWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~--~t~~W~~~~~~g~P~~Rsgh~~v~~~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..+|.+++ ....- .+.. .+..+ ..++..+ +.++++.+.. +.+.+||+.+.....+...
T Consensus 90 ~~l~~~~~~~~g~~~-~l~~--~~~~~--~~~~s~dg~~~~~~s~~~---------~~~~l~d~~~g~~~~l~~~----- 150 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ-RLEA--VKPMR--ILSGVDTGEAVVFTGATE---------DRVALYALDGGGLRELARL----- 150 (582)
T ss_dssp EEEEEEETTSTTCCE-ECTT--SCSBE--EEEEEECSSCEEEEEECS---------SCEEEEEEETTEEEEEEEE-----
T ss_pred eEEEEEeccCCCccc-cccC--CCCce--eeeeCCCCCeEEEEecCC---------CCceEEEccCCcEEEeecC-----
Confidence 46888887 44332 3332 12111 2233333 4555555432 2334778888877777654
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEE
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv 311 (685)
+. ...++.. +++.+++++.... -...+|++|+.+..+..+... .....+.+.. +++.++
T Consensus 151 ~~--~~~~~sp-DG~~la~~~~~~~------------~~~~i~~~d~~~g~~~~l~~~-----~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 151 PG--FGFVSDI-RGDLIAGLGFFGG------------GRVSLFTSNLSSGGLRVFDSG-----EGSFSSASISPGMKVTA 210 (582)
T ss_dssp SS--CEEEEEE-ETTEEEEEEEEET------------TEEEEEEEETTTCCCEEECCS-----SCEEEEEEECTTSCEEE
T ss_pred CC--ceEEECC-CCCEEEEEEEcCC------------CCeEEEEEcCCCCCceEeecC-----CCccccceECCCCCEEE
Confidence 22 2222223 4444455444322 123499999998888877432 1112233333 555554
Q ss_pred ecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
.+...+ ...|++||+.+....
T Consensus 211 ~~~~~~------------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 211 GLETAR------------EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEECSS------------CEEEEEECTTTCCEE
T ss_pred EccCCC------------eeEEEEEcCCCCcEE
Confidence 322211 246899999888776
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=90.73 E-value=1.4 Score=44.63 Aligned_cols=119 Identities=10% Similarity=0.084 Sum_probs=60.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE---CCEEEEEcCccCCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyvfGG~~~s~~~ 149 (685)
++.+.| ++.+++.|+. + +.+.+||+.++....+..... ....-.+++.. ++.+++.|+.+
T Consensus 18 ~v~~s~--~g~~lasgs~--D-------~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s~D----- 80 (316)
T 3bg1_A 18 DAQMDY--YGTRLATCSS--D-------RSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASCSYD----- 80 (316)
T ss_dssp EEEECG--GGCEEEEEET--T-------TEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEETT-----
T ss_pred EeeEcC--CCCEEEEEeC--C-------CeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEECC-----
Confidence 344445 5677777772 2 357778887765432221110 01111222222 25677777753
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--C--CEEEEEccccCCCCceeeeceEEEEEcCCC-ceEEe
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEI 224 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v 224 (685)
..+.+||+.+..|..+.. +......-.++.+ + +.+++.|+.+ ..+.+||+.+. .|...
T Consensus 81 ------~~v~iWd~~~~~~~~~~~--~~~h~~~V~~v~~~p~~~g~~lasgs~D---------~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 81 ------RKVIIWREENGTWEKSHE--HAGHDSSVNSVCWAPHDYGLILACGSSD---------GAISLLTYTGEGQWEVK 143 (316)
T ss_dssp ------SCEEEECCSSSCCCEEEE--ECCCSSCCCEEEECCTTTCSCEEEECSS---------SCEEEEEECSSSCEEEC
T ss_pred ------CEEEEEECCCCcceEEEE--ccCCCCceEEEEECCCCCCcEEEEEcCC---------CCEEEEecCCCCCccee
Confidence 347788888877755432 1111111223333 2 4567777653 35667777654 46543
Q ss_pred c
Q 005655 225 K 225 (685)
Q Consensus 225 ~ 225 (685)
.
T Consensus 144 ~ 144 (316)
T 3bg1_A 144 K 144 (316)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.69 E-value=9.5 Score=38.23 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=59.5
Q ss_pred eEEEEeccCC---CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCC
Q 005655 72 CSLNINPLKE---TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~---~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
.++...| + +.+++.|+. + +.+.+||+.+.......... .....-.+++.. ++.+++.|+..
T Consensus 43 ~~~~~~~--~~~~g~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d--- 107 (368)
T 3mmy_A 43 GCLSFSP--PTLPGNFLIAGSW--A-------NDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCD--- 107 (368)
T ss_dssp EEEEECC--TTSSSEEEEEEET--T-------SEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETT---
T ss_pred EEEEEcC--CCCCceEEEEECC--C-------CcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCC---
Confidence 3444554 3 478888773 2 35788888863322111100 011111223333 45566666642
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEE---ECCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL---YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~---~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
..+.+||+.+.....+.. ...+ -.++.. -++.+++.|+.+ ..|.+||+.+.+
T Consensus 108 --------g~v~iwd~~~~~~~~~~~--~~~~--v~~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~ 162 (368)
T 3mmy_A 108 --------KTAKMWDLSSNQAIQIAQ--HDAP--VKTIHWIKAPNYSCVMTGSWD---------KTLKFWDTRSSN 162 (368)
T ss_dssp --------SEEEEEETTTTEEEEEEE--CSSC--EEEEEEEECSSCEEEEEEETT---------SEEEEECSSCSS
T ss_pred --------CcEEEEEcCCCCceeecc--ccCc--eEEEEEEeCCCCCEEEEccCC---------CcEEEEECCCCc
Confidence 458899999887665433 1111 122222 256777777753 468889987764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=90.56 E-value=15 Score=36.59 Aligned_cols=180 Identities=8% Similarity=-0.034 Sum_probs=88.2
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC-cEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~-~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~ 148 (685)
.|++.+.| ++.||+.+. +.++.||+... .|+.-.. .....+++..+ ++.++|..+..
T Consensus 39 ~~~~~~~p--dG~ilvs~~-----------~~V~~~d~~G~~~W~~~~~----~~~~~~~~~~~~dG~~lv~~~~~---- 97 (276)
T 3no2_A 39 CNSVAATK--AGEILFSYS-----------KGAKMITRDGRELWNIAAP----AGCEMQTARILPDGNALVAWCGH---- 97 (276)
T ss_dssp CCEEEECT--TSCEEEECB-----------SEEEEECTTSCEEEEEECC----TTCEEEEEEECTTSCEEEEEEST----
T ss_pred CcCeEECC--CCCEEEeCC-----------CCEEEECCCCCEEEEEcCC----CCccccccEECCCCCEEEEecCC----
Confidence 45666776 677777322 35899999332 4764321 11223444444 45555553310
Q ss_pred CccccccCeEEEEECCCCc-EEEcccCCCCCC--CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC-CceEEe
Q 005655 149 QERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~--Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (685)
...++.||+.... |+.-...+.+.+ .........++.+++.... ...|.+||+.- ..|+.-
T Consensus 98 ------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---------~~~v~~~d~~G~~~w~~~ 162 (276)
T 3no2_A 98 ------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---------TSEVREIAPNGQLLNSVK 162 (276)
T ss_dssp ------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---------TTEEEEECTTSCEEEEEE
T ss_pred ------CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC---------CCEEEEECCCCCEEEEEE
Confidence 1357788874432 443211111111 1112223334555544321 24688998872 235543
Q ss_pred ccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC--ceeEEeecCCCCCCCcc--e
Q 005655 225 KPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRA--G 299 (685)
Q Consensus 225 ~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~~~~~g~~P~~R~--g 299 (685)
... .+ +++... ++.++|.+.... .+..||+.+ ..|+.-... .+..|. -
T Consensus 163 ~~~------~~---~~~~~~~~g~~~v~~~~~~----------------~v~~~d~~tG~~~w~~~~~~--~~~~~l~~~ 215 (276)
T 3no2_A 163 LSG------TP---FSSAFLDNGDCLVACGDAH----------------CFVQLNLESNRIVRRVNAND--IEGVQLFFV 215 (276)
T ss_dssp CSS------CC---CEEEECTTSCEEEECBTTS----------------EEEEECTTTCCEEEEEEGGG--SBSCCCSEE
T ss_pred CCC------Cc---cceeEcCCCCEEEEeCCCC----------------eEEEEeCcCCcEEEEecCCC--CCCcccccc
Confidence 221 11 223333 677777765433 278999884 367765321 121222 2
Q ss_pred eEEEEE-CCeEEEec
Q 005655 300 FSMCVH-KKRALLFG 313 (685)
Q Consensus 300 ~s~~~~-~~~iyvfG 313 (685)
.++++. ++.+||..
T Consensus 216 ~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 216 AQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred ccceEcCCCCEEEEe
Confidence 334444 78888776
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.36 E-value=6.1 Score=38.99 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=52.2
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~ 152 (685)
++...| ++.+++.|+. + ..+.+||+.+++-....... .. ...+....+.+++.|+..
T Consensus 72 ~v~~~~--~~~~l~sgs~--D-------g~v~iw~~~~~~~~~~~~~h--~~--~~~~~~~~~~~l~s~~~~-------- 128 (318)
T 4ggc_A 72 SVAWIK--EGNYLAVGTS--S-------AEVQLWDVQQQKRLRNMTSH--SA--RVGSLSWNSYILSSGSRS-------- 128 (318)
T ss_dssp EEEECT--TSSEEEEEET--T-------SEEEEEETTTTEEEEEEECC--SS--CEEEEEEETTEEEEEETT--------
T ss_pred EEEECC--CCCEEEEEEC--C-------CcEEEeecCCceeEEEecCc--cc--eEEEeecCCCEEEEEecC--------
Confidence 344454 5667777762 2 25778888887644322211 11 122333345555555532
Q ss_pred cccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 153 HHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
..+..++..+.........+ .............+.+++.|+.+ ..+.+||+.+.
T Consensus 129 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~ 182 (318)
T 4ggc_A 129 ---GHIHHHDVRVAEHHVATLSG-HSQEVCGLRWAPDGRHLASGGND---------NLVNVWPSAPG 182 (318)
T ss_dssp ---SEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEEEEETT---------SCEEEEESSCB
T ss_pred ---CceEeeecCCCceeEEEEcC-ccCceEEEEEcCCCCEEEEEecC---------cceeEEECCCC
Confidence 33555555554333222111 11111111122245566666643 35778888754
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=90.07 E-value=17 Score=36.57 Aligned_cols=112 Identities=10% Similarity=-0.060 Sum_probs=58.2
Q ss_pred ccEEEEEcCCCcEEEecCCCCC----------------CCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEE
Q 005655 101 GDLYRYDVEKQEWKVISSPNSP----------------PPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLD 162 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P----------------~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD 162 (685)
+.+++|++.+..+..+...... ....-+++++. ++.|||.... +.+++||
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------------~~i~~~d 107 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------------YHLSVVG 107 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------------TEEEEEC
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------------CCEEEEe
Confidence 4688999988877755421100 00113455555 5789987431 3478899
Q ss_pred CCCCcEEEcccCCC-CCCCccceEEEE--CCEEEEEccccCCC-Cc-------eeeeceEEEEEcCCCceEEe
Q 005655 163 LKTNQWEQLNLKGC-PSPRSGHRMVLY--KHKIIVFGGFYDTL-RE-------VRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 163 ~~t~~W~~~~~~g~-P~~Rsgh~~v~~--~~~lyv~GG~~~~~-~~-------~~~~~dv~~yD~~t~~W~~v 224 (685)
+.++..+.+..... .....-+.+++- ++.||+--...... +. ......|++||+.+.....+
T Consensus 108 ~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 108 SEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp TTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 88776655532100 001112233333 46888853211000 00 00125699999988766544
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=90.05 E-value=4.2 Score=41.06 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=20.1
Q ss_pred CCeEEEecceecccCCccccccccCCcEEEEECC-CCcEEEEEec
Q 005655 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELR 349 (685)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~~l~~~ 349 (685)
++.+++.||.. ..|.+|++. ...|..+...
T Consensus 273 ~g~~las~~~D--------------~~v~lw~~~~~g~~~~~~~~ 303 (316)
T 3bg1_A 273 TANILAVSGGD--------------NKVTLWKESVDGQWVCISDV 303 (316)
T ss_dssp TTCCEEEEESS--------------SCEEEEEECTTSCEEEEEEC
T ss_pred CCCEEEEEcCC--------------CeEEEEEECCCCcEEEeeec
Confidence 56777777753 247777765 5689887763
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=90.00 E-value=8.3 Score=43.91 Aligned_cols=126 Identities=10% Similarity=0.114 Sum_probs=69.5
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~ 150 (685)
..+....| +++.++++... +. ..+.+|.++..+..|+.+.... . .....+..++.||+......
T Consensus 229 ~~~~~~Sp--DG~~l~~~~~~--~~---~~~~l~~~~~~~~~~~~l~~~~---~-~~~~~~~~~g~l~~~s~~~~----- 292 (695)
T 2bkl_A 229 FLQSDLSR--DGKYLFVYILR--GW---SENDVYWKRPGEKDFRLLVKGV---G-AKYEVHAWKDRFYVLTDEGA----- 292 (695)
T ss_dssp EEEEEECT--TSCCEEEEEEE--TT---TEEEEEEECTTCSSCEEEEECS---S-CCEEEEEETTEEEEEECTTC-----
T ss_pred EEEEEECC--CCCEEEEEEeC--CC---CceEEEEEcCCCCceEEeecCC---C-ceEEEEecCCcEEEEECCCC-----
Confidence 34555555 45555554421 10 2357888887777888886532 1 11222334555666544321
Q ss_pred cccccCeEEEEECCCCc---EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 151 RFHHYKDFWMLDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~---W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
....++++|+.+.. |+.+.+.. + ...-..++..+++|++.+..++ ...||++++....-..+
T Consensus 293 ---~~~~l~~~d~~~~~~~~~~~l~~~~-~-~~~l~~~~~~~~~lv~~~~~dg-------~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 293 ---PRQRVFEVDPAKPARASWKEIVPED-S-SASLLSVSIVGGHLSLEYLKDA-------TSEVRVATLKGKPVRTV 357 (695)
T ss_dssp ---TTCEEEEEBTTBCSGGGCEEEECCC-S-SCEEEEEEEETTEEEEEEEETT-------EEEEEEEETTCCEEEEC
T ss_pred ---CCCEEEEEeCCCCCccCCeEEecCC-C-CCeEEEEEEECCEEEEEEEECC-------EEEEEEEeCCCCeeEEe
Confidence 12579999997765 88776521 1 1112223344888888766433 45788998765433333
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.88 E-value=16 Score=37.02 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=56.0
Q ss_pred CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEE
Q 005655 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
+.+++.|+. + +.+.+||+.+..-..+.... ....-.+++.. ++.+++.|+.. ..+.+
T Consensus 139 ~~~l~s~s~--d-------g~i~~wd~~~~~~~~~~~~~--~~~~i~~~~~~pdg~~lasg~~d-----------g~i~i 196 (343)
T 3lrv_A 139 TEYFIWADN--R-------GTIGFQSYEDDSQYIVHSAK--SDVEYSSGVLHKDSLLLALYSPD-----------GILDV 196 (343)
T ss_dssp CCEEEEEET--T-------CCEEEEESSSSCEEEEECCC--SSCCCCEEEECTTSCEEEEECTT-----------SCEEE
T ss_pred CCEEEEEeC--C-------CcEEEEECCCCcEEEEEecC--CCCceEEEEECCCCCEEEEEcCC-----------CEEEE
Confidence 456666662 2 36889999888765443222 11112233333 46777777753 35889
Q ss_pred EECCCCcEE--EcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 161 LDLKTNQWE--QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 161 yD~~t~~W~--~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
||+.+..-. .+.. .. ...-..+.+ ++.+++.|+ . +.|.+||+.+..
T Consensus 197 wd~~~~~~~~~~~~~--~h--~~~v~~l~fs~~g~~l~s~~-~---------~~v~iwd~~~~~ 246 (343)
T 3lrv_A 197 YNLSSPDQASSRFPV--DE--EAKIKEVKFADNGYWMVVEC-D---------QTVVCFDLRKDV 246 (343)
T ss_dssp EESSCTTSCCEECCC--CT--TSCEEEEEECTTSSEEEEEE-S---------SBEEEEETTSST
T ss_pred EECCCCCCCccEEec--cC--CCCEEEEEEeCCCCEEEEEe-C---------CeEEEEEcCCCC
Confidence 999877533 2211 01 111122333 456666666 2 268889987653
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=89.58 E-value=13 Score=37.24 Aligned_cols=194 Identities=12% Similarity=0.101 Sum_probs=97.1
Q ss_pred eeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCC
Q 005655 99 VYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (685)
Q Consensus 99 ~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (685)
....+|++|+.++.-+.+. ..+..+.. ++..++|....... ....+|++|+.++....+.. .+
T Consensus 41 ~~~~l~~~d~~~~~~~~l~--------~~~~~~~SpDg~~la~~~~~~~~------~~~~l~~~~~~~g~~~~l~~--~~ 104 (347)
T 2gop_A 41 YENTIVIENLKNNARRFIE--------NATMPRISPDGKKIAFMRANEEK------KVSEIWVADLETLSSKKILE--AK 104 (347)
T ss_dssp EEEEEEEEETTTCCEEEEE--------SCEEEEECTTSSEEEEEEEETTT------TEEEEEEEETTTTEEEEEEE--ES
T ss_pred ccceEEEEeCCCCceEEcc--------cCCCeEECCCCCEEEEEEeccCC------CcceEEEEECCCCceEEEEc--CC
Confidence 4568999999988776661 11222222 34444443322110 12469999999988777655 22
Q ss_pred CCCccceEEEE--CCEEEEEccccCC----------------CCc--eeeeceEEEEEcCCCce-EEeccCCCCCCCCCc
Q 005655 178 SPRSGHRMVLY--KHKIIVFGGFYDT----------------LRE--VRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSPR 236 (685)
Q Consensus 178 ~~Rsgh~~v~~--~~~lyv~GG~~~~----------------~~~--~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~R 236 (685)
. ...+.| ++..++|+..... +.. ......|+++|+.+... ..+.. +
T Consensus 105 ~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~------~--- 171 (347)
T 2gop_A 105 N----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK------P--- 171 (347)
T ss_dssp E----EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE------E---
T ss_pred C----ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC------C---
Confidence 2 333444 4544444432100 000 00136799999998876 55543 1
Q ss_pred cceeEEEeCCEEEEEecccCCCCcccCCCCCCce-eeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecce
Q 005655 237 SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGII-HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (685)
Q Consensus 237 s~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~-~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (685)
....++...+.|++.+..... ..... ...+|.+| +..+..+... .......-+++.++|++.
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~--------~~~~~~~~~l~~~d--~~~~~~l~~~-------~~~~~~spdg~~l~~~~~ 234 (347)
T 2gop_A 172 RFSSGIWHRDKIVVNVPHREI--------IPQYFKFWDIYIWE--DGKEEKMFEK-------VSFYAVDSDGERILLYGK 234 (347)
T ss_dssp TTCEEEEETTEEEEEEECCCS--------SCCSSCCEEEEEEE--TTEEEEEEEE-------ESEEEEEECSSCEEEEEC
T ss_pred CcccccCCCCeEEEEEecccc--------cccccccccEEEeC--CCceEEeccC-------cceeeECCCCCEEEEEEc
Confidence 222333444445555533221 00002 45789999 6677766531 112222346665555543
Q ss_pred ecccCCccccccccCCcEEEEECCCCcEEEE
Q 005655 316 VDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (685)
Q Consensus 316 ~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (685)
.... .......||.+| +..+..+
T Consensus 235 ~~~~------~~~~~~~l~~~d--~~~~~~l 257 (347)
T 2gop_A 235 PEKK------YMSEHNKLYIYD--GKEVMGI 257 (347)
T ss_dssp CSSS------CCCSSCEEEEEC--SSCEEES
T ss_pred cccC------CccccceEEEEC--CCceEec
Confidence 2210 011245789988 5555544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=89.55 E-value=4.6 Score=41.48 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=60.3
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
..||.+++....+..+.... + .......+.. ++..+++.+..... ....++++|+.++....+.. .+.
T Consensus 216 ~~l~~~d~~~~~~~~l~~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~------~~~~l~~~d~~~g~~~~l~~--~~~- 284 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKEHA-E-GESCTHEFWIPDGSAMAYVSYFKGQ------TDRVIYKANPETLENEEVMV--MPP- 284 (396)
T ss_dssp CCCEEEETTSCCCEESSCCC-T-TEEEEEEEECTTSSCEEEEEEETTT------CCEEEEEECTTTCCEEEEEE--CCS-
T ss_pred ceEEEEECCCCceeEeeccC-C-CccccceEECCCCCEEEEEecCCCC------ccceEEEEECCCCCeEEeee--CCC-
Confidence 57999999888887775421 1 1111222222 34433333322110 11349999999988777654 231
Q ss_pred CccceEEEE-CCEEEEEccccCC--C-----CceeeeceEEEEEcCCCceEEeccC
Q 005655 180 RSGHRMVLY-KHKIIVFGGFYDT--L-----REVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 180 Rsgh~~v~~-~~~lyv~GG~~~~--~-----~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
.. ....- ++.++++++.... . ........|+++|+.+.....+...
T Consensus 285 -~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (396)
T 3c5m_A 285 -CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKH 338 (396)
T ss_dssp -EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEEC
T ss_pred -CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCC
Confidence 12 22222 6666666542100 0 0001136799999998887766544
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=89.53 E-value=19 Score=36.25 Aligned_cols=216 Identities=7% Similarity=-0.092 Sum_probs=105.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCC-CCcceeEEEEE--CCEEEEEcCccCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP-PPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P-~~R~~ha~v~~--~~~iyvfGG~~~s~~ 148 (685)
+++++.+. ++.|||.... +.+++||+.++..+.+...... ....-+.+++. ++.|||.-.......
T Consensus 83 ~gi~~~~~-~g~l~v~d~~----------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~ 151 (322)
T 2fp8_A 83 YDISYNLQ-NNQLYIVDCY----------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 151 (322)
T ss_dssp EEEEEETT-TTEEEEEETT----------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCT
T ss_pred ceEEEcCC-CCcEEEEECC----------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccc
Confidence 44555532 3678886331 2378889887766555332100 11122334443 468888642210000
Q ss_pred Ccc------ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-C-CEEEEEccccCCCCceeeeceEEEEEcCCC-
Q 005655 149 QER------FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQF- 219 (685)
Q Consensus 149 ~~~------~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~- 219 (685)
... ......+++||+.+.....+... +. .-+.+++- + +.||+.-.. .+.|++|++...
T Consensus 152 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~---~p~gia~~~dg~~lyv~d~~---------~~~I~~~~~~~~~ 218 (322)
T 2fp8_A 152 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LH---VPGGAEVSADSSFVLVAEFL---------SHQIVKYWLEGPK 218 (322)
T ss_dssp TCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ES---CCCEEEECTTSSEEEEEEGG---------GTEEEEEESSSTT
T ss_pred cccceehcccCCCceEEEEeCCCCEEEEeccC-Cc---cCcceEECCCCCEEEEEeCC---------CCeEEEEECCCCc
Confidence 000 00125699999988876654321 11 11233333 2 358876321 357899998752
Q ss_pred --ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCC
Q 005655 220 --KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP 296 (685)
Q Consensus 220 --~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~ 296 (685)
.+..+... +. -..+++. ++.|||......... ........+++||+....-..+....-.+ .
T Consensus 219 ~~~~~~~~~~-----~g---P~gi~~d~~G~l~va~~~~~~~~------~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~ 283 (322)
T 2fp8_A 219 KGTAEVLVKI-----PN---PGNIKRNADGHFWVSSSEELDGN------MHGRVDPKGIKFDEFGNILEVIPLPPPFA-G 283 (322)
T ss_dssp TTCEEEEEEC-----SS---EEEEEECTTSCEEEEEEEETTSS------TTSCEEEEEEEECTTSCEEEEEECCTTTT-T
T ss_pred CCccceEEeC-----CC---CCCeEECCCCCEEEEecCccccc------ccCCCccEEEEECCCCCEEEEEECCCCCc-c
Confidence 33333322 21 1223333 567888754321100 00112456889999765555554321111 1
Q ss_pred cceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 297 RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 297 R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
....+++..+++|||.+.. .+.|.+|++..
T Consensus 284 ~~~~~~~~~~g~L~v~~~~--------------~~~i~~~~~~~ 313 (322)
T 2fp8_A 284 EHFEQIQEHDGLLYIGTLF--------------HGSVGILVYDK 313 (322)
T ss_dssp SCCCEEEEETTEEEEECSS--------------CSEEEEEEC--
T ss_pred ccceEEEEeCCEEEEeecC--------------CCceEEEeccc
Confidence 2223445568888887533 24578887653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.39 E-value=16 Score=38.02 Aligned_cols=71 Identities=13% Similarity=0.308 Sum_probs=37.3
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCCCCCcce----eEEEEE--CC-EEEEEcCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSA----HQAVSW--KN-YLYIFGGE 143 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P~~R~~----ha~v~~--~~-~iyvfGG~ 143 (685)
++...| ++.+++.| . + ..+.+||+.+. .+..+... |..... ..++.+ ++ .+++.|+.
T Consensus 182 ~~~~~~--~~~~l~s~-~--d-------~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 182 SISINS--DYETYLSA-D--D-------LRINLWHLEITDRSFNIVDIK--PANMEELTEVITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp EEEECT--TSSEEEEE-C--S-------SEEEEEETTEEEEEEEEEECC--CSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred EEEEcC--CCCEEEEe-C--C-------CeEEEEECCCCCceeeeeecc--cccccccCcceEEEEECCCCCcEEEEEeC
Confidence 455565 45666665 2 3 25788888732 23322111 111111 222333 24 67777775
Q ss_pred cCCCCCccccccCeEEEEECCCCcE
Q 005655 144 FTSPNQERFHHYKDFWMLDLKTNQW 168 (685)
Q Consensus 144 ~~s~~~~~~~~~~dv~~yD~~t~~W 168 (685)
. ..+.+||+.+...
T Consensus 248 d-----------g~i~iwd~~~~~~ 261 (447)
T 3dw8_B 248 K-----------GTIRLCDMRASAL 261 (447)
T ss_dssp T-----------SCEEEEETTTCSS
T ss_pred C-----------CeEEEEECcCCcc
Confidence 3 3578899887763
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=89.37 E-value=2.3 Score=42.80 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=40.7
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-C-CEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~-~~lyv~GG~~~~~~~~~~~~dv 211 (685)
++.+|+.++. -+.++++|+.+++....-. .+....-+.+++. + +++|+.+.. ...|
T Consensus 10 ~~~~~v~~~~-----------~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~~~v~~~~---------~~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNY-----------PNNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNH---------YGDI 67 (349)
T ss_dssp TCEEEEEEET-----------TTEEEEEETTTTEEEEEEE--CSSCCSSCEEEECTTSSEEEEEETT---------TTEE
T ss_pred CCEEEEEeCC-----------CCeEEEEECCCCcEEEEEe--cCCCCCCceeEECCCCCEEEEEeCC---------CCcE
Confidence 5678887764 2569999999887654322 1211112333333 3 357776542 2579
Q ss_pred EEEEcCCCceEE
Q 005655 212 YVFDLDQFKWQE 223 (685)
Q Consensus 212 ~~yD~~t~~W~~ 223 (685)
++||+.+.+...
T Consensus 68 ~~~d~~t~~~~~ 79 (349)
T 1jmx_B 68 YGIDLDTCKNTF 79 (349)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 999998876543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=89.35 E-value=12 Score=38.80 Aligned_cols=131 Identities=8% Similarity=-0.038 Sum_probs=64.0
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEE--ECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~--~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.+.+++..++......... ........+. -++..++.++..... ...++.++.....+...........
T Consensus 198 ~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~fspdg~~l~~~s~d~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~ 268 (365)
T 4h5i_A 198 SLEVISTVTGSCIARKTDF--DKNWSLSKINFIADDTVLIAASLKKGK-------GIVLTKISIKSGNTSVLRSKQVTNR 268 (365)
T ss_dssp CEEEEETTTCCEEEEECCC--CTTEEEEEEEEEETTEEEEEEEESSSC-------CEEEEEEEEETTEEEEEEEEEEESS
T ss_pred eEEEEEeccCcceeeeecC--CCCCCEEEEEEcCCCCEEEEEecCCcc-------eeEEeecccccceecceeeeeecCC
Confidence 4556666665544322211 1111122222 267777777654431 1246777776666544322111111
Q ss_pred CccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccc--eeEEEe-CCEEEEEecc
Q 005655 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG--FQFFVY-QDEVFLYGGY 254 (685)
Q Consensus 180 Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~--~s~~~~-~~~Iyv~GG~ 254 (685)
...-.++.+ ++.+++.|+.+ ..|.+||+.+.+-.. .. ..+..+ .+++.. ++.+++.|+.
T Consensus 269 ~~~V~~~~~Spdg~~lasgs~D---------~~V~iwd~~~~~~~~--~~-----~~gH~~~V~~v~fSpdg~~laS~S~ 332 (365)
T 4h5i_A 269 FKGITSMDVDMKGELAVLASND---------NSIALVKLKDLSMSK--IF-----KQAHSFAITEVTISPDSTYVASVSA 332 (365)
T ss_dssp CSCEEEEEECTTSCEEEEEETT---------SCEEEEETTTTEEEE--EE-----TTSSSSCEEEEEECTTSCEEEEEET
T ss_pred CCCeEeEEECCCCCceEEEcCC---------CEEEEEECCCCcEEE--Ee-----cCcccCCEEEEEECCCCCEEEEEeC
Confidence 111223333 67788888853 468899998765322 11 111111 122222 7778888887
Q ss_pred cCC
Q 005655 255 SKE 257 (685)
Q Consensus 255 ~~~ 257 (685)
++.
T Consensus 333 D~t 335 (365)
T 4h5i_A 333 ANT 335 (365)
T ss_dssp TSE
T ss_pred CCe
Confidence 655
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=89.06 E-value=4 Score=43.30 Aligned_cols=114 Identities=11% Similarity=0.160 Sum_probs=55.3
Q ss_pred eEEEEeccCCCE-EEEEcCeecCCCceeeeccEEEEEcCCC---cEEEecCCC-CCCCcceeEEEEE--CCEEEEEcCcc
Q 005655 72 CSLNINPLKETE-LILYGGEFYNGNKTYVYGDLYRYDVEKQ---EWKVISSPN-SPPPRSAHQAVSW--KNYLYIFGGEF 144 (685)
Q Consensus 72 ~s~~~~p~~~~~-L~vfGG~~~~g~~~~~~ndv~~yd~~~~---~W~~l~s~~-~P~~R~~ha~v~~--~~~iyvfGG~~ 144 (685)
.++...| .+. +++.|+. + +.+.+|++.+. .+....... ......-++++.. ++.+++.|+..
T Consensus 185 ~~l~~~~--~~~~~l~s~~~--d-------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d 253 (430)
T 2xyi_A 185 YGLSWNP--NLNGYLLSASD--D-------HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253 (430)
T ss_dssp CCEEECT--TSTTEEEEECT--T-------SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred EEEEeCC--CCCCeEEEEeC--C-------CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC
Confidence 4455555 233 6666662 2 35788898772 121110000 0111222333333 35677776642
Q ss_pred CCCCCccccccCeEEEEECCCCc-EEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 145 TSPNQERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 145 ~s~~~~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
..+.+||+.+.. ...+.. .........++.+ +.++++.|+.. ..|.+||+.+
T Consensus 254 -----------g~i~i~d~~~~~~~~~~~~--~~~~~~~v~~i~~~p~~~~~l~tg~~d---------g~v~vwd~~~ 309 (430)
T 2xyi_A 254 -----------QKLMIWDTRNNNTSKPSHT--VDAHTAEVNCLSFNPYSEFILATGSAD---------KTVALWDLRN 309 (430)
T ss_dssp -----------SEEEEEETTCSCSSSCSEE--EECCSSCEEEEEECSSCTTEEEEEETT---------SEEEEEETTC
T ss_pred -----------CeEEEEECCCCCCCcceeE--eecCCCCeEEEEeCCCCCCEEEEEeCC---------CeEEEEeCCC
Confidence 458899988652 111100 0011122233344 33588888853 4588899876
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=16 Score=40.73 Aligned_cols=194 Identities=14% Similarity=0.127 Sum_probs=98.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCe
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
++.+||.... .+.|.++|+.+++-. .++.. ..-|.+++. +..+|+.+. -+.
T Consensus 166 ~~~~~V~~~~---------~~~V~viD~~t~~v~~~i~~g-----~~p~~v~~SpDGr~lyv~~~------------dg~ 219 (567)
T 1qks_A 166 ENLFSVTLRD---------AGQIALIDGSTYEIKTVLDTG-----YAVHISRLSASGRYLFVIGR------------DGK 219 (567)
T ss_dssp GGEEEEEETT---------TTEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEET------------TSE
T ss_pred CceEEEEeCC---------CCeEEEEECCCCeEEEEEeCC-----CCccceEECCCCCEEEEEcC------------CCe
Confidence 4677776651 257999999988654 44332 233544444 457887642 146
Q ss_pred EEEEECC--CCcE-EEcccCCCCCCCccceEEEE-----CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 158 FWMLDLK--TNQW-EQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 158 v~~yD~~--t~~W-~~~~~~g~P~~Rsgh~~v~~-----~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
+.+||+. +.+- ..+.. +..-..+++. ++ ++|+..- ..+.+.+||..+.+=...-+..
T Consensus 220 V~viD~~~~t~~~v~~i~~-----G~~P~~ia~s~~~~pDGk~l~v~n~---------~~~~v~ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 220 VNMIDLWMKEPTTVAEIKI-----GSEARSIETSKMEGWEDKYAIAGAY---------WPPQYVIMDGETLEPKKIQSTR 285 (567)
T ss_dssp EEEEETTSSSCCEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEE---------ETTEEEEEETTTCCEEEEEECC
T ss_pred EEEEECCCCCCcEeEEEec-----CCCCceeEEccccCCCCCEEEEEEc---------cCCeEEEEECCCCcEEEEEecc
Confidence 9999995 4432 22222 2211233333 34 6666532 2367888998775533321110
Q ss_pred C---C---CCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEE
Q 005655 229 G---S---MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (685)
Q Consensus 229 ~---~---~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~ 302 (685)
. . -.|.+|.....+...+..+++--. ....+++.|........+... +..+.-|.+
T Consensus 286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~---------------~~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~ 347 (567)
T 1qks_A 286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVK---------------ETGKILLVDYTDLNNLKTTEI---SAERFLHDG 347 (567)
T ss_dssp EECTTTCCEESCCCEEEEEECSSSSEEEEEET---------------TTTEEEEEETTCSSEEEEEEE---ECCSSEEEE
T ss_pred ccccccccccCCCceEEEEEcCCCCEEEEEec---------------CCCeEEEEecCCCccceeeee---eccccccCc
Confidence 0 0 013344443333333333333111 113477888776554444332 334555555
Q ss_pred EEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 303 CVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 303 ~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
.+- +++.+++.... .|.|.++|+.+++=..
T Consensus 348 ~~~pdgr~~~va~~~-------------sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 348 GLDGSHRYFITAANA-------------RNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EECTTSCEEEEEEGG-------------GTEEEEEETTTTEEEE
T ss_pred eECCCCCEEEEEeCC-------------CCeEEEEECCCCcEEE
Confidence 544 34433333221 4679999999886443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=88.96 E-value=16 Score=41.50 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=82.6
Q ss_pred ccEEEEEcCCC--cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCC---cEEEcccCC
Q 005655 101 GDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN---QWEQLNLKG 175 (685)
Q Consensus 101 ndv~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~---~W~~~~~~g 175 (685)
+++|++|..+. .|..+.... ......+...++.||+....... ...++.+|+.+. .|+.+.+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~---~~~~~~~~~~g~~l~~~t~~~~~--------~~~l~~~d~~~~~~~~~~~l~~~- 326 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDL---DADVSLVDNKGSTLYLLTNRDAP--------NRRLVTVDAANPGPAHWRDLIPE- 326 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSS---SSCEEEEEEETTEEEEEECTTCT--------TCEEEEEETTSCCGGGCEEEECC-
T ss_pred cEEEEEECCCCCCceEEEeCCC---CceEEEEeccCCEEEEEECCCCC--------CCEEEEEeCCCCCccccEEEecC-
Confidence 58999998776 788876532 11112233447889988764321 257999999874 48877652
Q ss_pred CCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEE--eCCEEEEE-e
Q 005655 176 CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV--YQDEVFLY-G 252 (685)
Q Consensus 176 ~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~--~~~~Iyv~-G 252 (685)
... .- .....+++|++..-..+ ...|+++|+.......+... ...+...+.. .++.|++. .
T Consensus 327 -~~~-~~-~~s~~g~~lv~~~~~~g-------~~~l~~~d~~g~~~~~l~~p------~~~~~~~~~~~~d~~~l~~~~s 390 (693)
T 3iuj_A 327 -RQQ-VL-TVHSGSGYLFAEYMVDA-------TARVEQFDYEGKRVREVALP------GLGSVSGFNGKHDDPALYFGFE 390 (693)
T ss_dssp -CSS-CE-EEEEETTEEEEEEEETT-------EEEEEEECTTSCEEEEECCS------SSSEEEECCCCTTCSCEEEEEE
T ss_pred -CCC-EE-EEEEECCEEEEEEEECC-------eeEEEEEECCCCeeEEeecC------CCceEEeeecCCCCCEEEEEec
Confidence 111 12 44445677766543221 45789999887665555432 1111111111 12333333 2
Q ss_pred cccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecC
Q 005655 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (685)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~ 290 (685)
+.. .-..++.||+.+..++.+...
T Consensus 391 s~~--------------tP~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 391 NYA--------------QPPTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp CSS--------------SCCEEEEECTTTCCEEEEECC
T ss_pred CCC--------------CCCEEEEEECCCCeEEEEEeC
Confidence 221 124588899888887777653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=88.81 E-value=13 Score=41.86 Aligned_cols=126 Identities=12% Similarity=0.144 Sum_probs=68.0
Q ss_pred eEEEEECCEEEEEcCccCCCCCccccccCeEEEEEC-CCCc--EEEcccCCC---CCCC---ccceEEE--ECCE----E
Q 005655 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTNQ--WEQLNLKGC---PSPR---SGHRMVL--YKHK----I 192 (685)
Q Consensus 128 ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~-~t~~--W~~~~~~g~---P~~R---sgh~~v~--~~~~----l 192 (685)
.+-++.++.||+.+.. .+.++.||. .|++ |+.-..... +..+ ...+.++ .++. |
T Consensus 56 ~tP~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV 124 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF-----------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALI 124 (599)
T ss_dssp SCCEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEE
T ss_pred eccEEECCEEEEEeCC-----------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEE
Confidence 3445679999998652 146889999 7774 887443110 1011 1223445 5666 7
Q ss_pred EEEccccCCCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCce
Q 005655 193 IVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGII 270 (685)
Q Consensus 193 yv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~ 270 (685)
|+... ...|+++|..+.+ |+.-..... +......+.++.++.||+-.+.... ..
T Consensus 125 ~v~t~----------dg~l~AlDa~TG~~~W~~~~~~~~---~~~~~~ssP~v~~g~V~vg~~g~e~-----------g~ 180 (599)
T 1w6s_A 125 LKTQL----------DGNVAALNAETGETVWKVENSDIK---VGSTLTIAPYVVKDKVIIGSSGAEL-----------GV 180 (599)
T ss_dssp EEECT----------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEECCBCGGG-----------TC
T ss_pred EEEcC----------CCEEEEEECCCCCEEEeecCCCCC---ccceeecCCEEECCEEEEEeccccc-----------CC
Confidence 77532 2468999988764 875432100 0001122234457877764321110 12
Q ss_pred eeeEEEEeCCCc--eeEEee
Q 005655 271 HSDLWSLDPRTW--EWSKVK 288 (685)
Q Consensus 271 ~~dv~~yd~~t~--~W~~~~ 288 (685)
...++.||+.+. .|+.-.
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp CCEEEEEETTTCCEEEEEES
T ss_pred CCeEEEEECCCCcEEEEEcC
Confidence 245889998764 587654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.66 E-value=19 Score=35.24 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=62.3
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
+.|+++|+.+++...+-.... ....-.+++.. ++.+++.|+.+ ..+.+||+.+++-..... ....
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~-~~~~V~~v~~~~~~~~l~sgs~D-----------g~v~iw~~~~~~~~~~~~--~h~~ 110 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSS-----------AEVQLWDVQQQKRLRNMT--SHSA 110 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTTEEEEEEE--CCSS
T ss_pred CEEEEEECCCCCEEEEEEecC-CCCeEEEEEECCCCCEEEEEECC-----------CcEEEeecCCceeEEEec--Cccc
Confidence 368999999987665432211 11111222222 46777777753 357888998876443322 1222
Q ss_pred CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC
Q 005655 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 180 Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
...+....+.+++.|+.. ..+..++..+.......... .............+.+++.|+..+.
T Consensus 111 --~~~~~~~~~~~l~s~~~~---------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d~~ 173 (318)
T 4ggc_A 111 --RVGSLSWNSYILSSGSRS---------GHIHHHDVRVAEHHVATLSG----HSQEVCGLRWAPDGRHLASGGNDNL 173 (318)
T ss_dssp --CEEEEEEETTEEEEEETT---------SEEEEEETTSSSCEEEEEEC----CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred --eEEEeecCCCEEEEEecC---------CceEeeecCCCceeEEEEcC----ccCceEEEEEcCCCCEEEEEecCcc
Confidence 222344455666666643 23455555544333222210 1111111112225666777776654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=88.60 E-value=21 Score=35.70 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=27.6
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
.+.+||+.+..-...-. + . ...-..+.+ ++.+++.||.+ ..|.+||+.+.+
T Consensus 177 ~i~~wd~~~~~~~~~~~-~-h--~~~v~~~~~sp~g~~l~s~~~d---------g~i~iwd~~~~~ 229 (319)
T 3frx_A 177 MVKAWNLNQFQIEADFI-G-H--NSNINTLTASPDGTLIASAGKD---------GEIMLWNLAAKK 229 (319)
T ss_dssp CEEEEETTTTEEEEEEC-C-C--CSCEEEEEECTTSSEEEEEETT---------CEEEEEETTTTE
T ss_pred EEEEEECCcchhheeec-C-C--CCcEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCc
Confidence 47788887655332111 1 1 111122223 56777777753 368888887764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.45 E-value=10 Score=39.67 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=18.8
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE 112 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~ 112 (685)
=.++...| ++.+++.||. + ..+.+|++.+..
T Consensus 31 V~~v~~s~--~g~~la~g~~--d-------g~v~iw~~~~~~ 61 (447)
T 3dw8_B 31 ISTVEFNH--SGELLATGDK--G-------GRVVIFQQEQEN 61 (447)
T ss_dssp EEEEEECS--SSSEEEEEET--T-------SEEEEEEECC--
T ss_pred EEEEEECC--CCCEEEEEcC--C-------CeEEEEEecCCC
Confidence 34555565 5778888873 2 357788877654
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=88.28 E-value=14 Score=39.21 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=13.2
Q ss_pred cceEEEEeccCCCEEEEEcC
Q 005655 70 SNCSLNINPLKETELILYGG 89 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG 89 (685)
..|++++.. ++.||.+|-
T Consensus 130 ~~h~~alt~--~G~v~~wG~ 147 (406)
T 4d9s_A 130 DSHCLAVTM--EGEVQSWGR 147 (406)
T ss_dssp SSEEEEEET--TSCEEEEEC
T ss_pred hhheEEEcC--CCcEEEeCC
Confidence 357777663 689999994
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=88.18 E-value=11 Score=42.67 Aligned_cols=114 Identities=10% Similarity=-0.030 Sum_probs=59.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.++++|+.+++-..+.....-....-.+.+.- +++.++++........ ......+|++|+.++....+........+
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~~l~~~~~~~~~ 115 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQ--HSYTGYYVLSKIPHGDPQSLDPPEVSNAK 115 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSS--SCCCSEEEEEESSSCCCEECCCTTCCSCC
T ss_pred CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCcccee--ecceeeEEEEECCCCceEeccCCcccccc
Confidence 68889998876655543211000011222222 4665566543322111 12347899999999887666542111111
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
..+....-+++.++|+.. +.|+++|+.+.....+...
T Consensus 116 ~~~~~~SPdG~~la~~~~----------~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 116 LQYAGWGPKGQQLIFIFE----------NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp CSBCCBCSSTTCEEEEET----------TEEEEESSSSSCCEEEECC
T ss_pred ccccEECCCCCEEEEEEC----------CeEEEEECCCCceEEEecC
Confidence 112222225555555542 3689999888777766543
|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
Probab=87.76 E-value=21 Score=34.59 Aligned_cols=104 Identities=13% Similarity=0.312 Sum_probs=54.8
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc-EE--EecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCcccccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WK--VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHY 155 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~-W~--~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~ 155 (685)
.+++|+|=|. .+|+++..... .. .+...-+-.|..--|+... ++++|+|-|
T Consensus 40 ~g~~~fFkg~-----------~~Wr~~~~~~~~~~P~~I~~~wp~lp~~IDAA~~~~~~~k~yfFkG------------- 95 (218)
T 1gen_A 40 RGEIFFFKDR-----------FIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAG------------- 95 (218)
T ss_dssp TTEEEEEETT-----------EEEEESSTTSCCEEEEEGGGTCTTSCSCCSEEEEETTTTEEEEEET-------------
T ss_pred CCcEEEEECC-----------EEEEEeCCCCccCCCEEHHHhcCCCCCCccEEEEECCCCEEEEEeC-------------
Confidence 5889988873 35555544321 11 2221110112222233333 589999977
Q ss_pred CeEEEEECCCCc--E-EEcccCCCCCCC-ccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 156 KDFWMLDLKTNQ--W-EQLNLKGCPSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 156 ~dv~~yD~~t~~--W-~~~~~~g~P~~R-sgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
+.+|+|+..+.. + ..|...+.|..- .-.+++.+ ++++|+|-| +..|+||..+.
T Consensus 96 ~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-----------~~ywr~d~~~~ 154 (218)
T 1gen_A 96 NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-----------DKFWRYNEVKK 154 (218)
T ss_dssp TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-----------TEEEEEETTTT
T ss_pred CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-----------CEEEEEECccc
Confidence 568999853110 0 122222334321 22344443 689999977 46899998765
|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.69 E-value=5.9 Score=37.86 Aligned_cols=151 Identities=14% Similarity=0.290 Sum_probs=77.2
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCC--c-EEEccc--CCCCCCCccceEEEECCEEEEEccccCCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--Q-WEQLNL--KGCPSPRSGHRMVLYKHKIIVFGGFYDTLR 203 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~--~-W~~~~~--~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~ 203 (685)
+++.+.+.+|+|-| +.+|+++.... . =..|.. .++|. ....+....++++|+|-|
T Consensus 10 A~~~~~g~~~fFkg-------------~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg------ 69 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------------RWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG------ 69 (196)
T ss_dssp EEEEETTEEEEEET-------------TEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET------
T ss_pred EEEEcCCEEEEEEC-------------CEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC------
Confidence 44566899999987 46888864310 0 012221 13453 222222223688999977
Q ss_pred ceeeeceEEEEEcCCCce---EEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeC
Q 005655 204 EVRYYNDLYVFDLDQFKW---QEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (685)
Q Consensus 204 ~~~~~~dv~~yD~~t~~W---~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (685)
+.+|+|+..+... ..|...- ..+|......++... ++++|+|=|. ..|+||.
T Consensus 70 -----~~yw~~~~~~~~~gyPk~I~~~~-~glP~~~IDAA~~~~~~g~~yfFkG~------------------~yw~yd~ 125 (196)
T 3c7x_A 70 -----DKHWVFDEASLEPGYPKHIKELG-RGLPTDKIDAALFWMPNGKTYFFRGN------------------KYYRFNE 125 (196)
T ss_dssp -----TEEEEEETTEECTTCSEEGGGTC-BSCCSSCCSEEEEETTTTEEEEEETT------------------EEEEEET
T ss_pred -----CEEEEEeCCcccCCCCeEhhhcC-CCCCCCcccEEEEEccCCEEEEEECC------------------EEEEEeC
Confidence 4568887542110 1111110 012322233333222 6899999664 2788987
Q ss_pred CCceeEE-----eec-CCCCCCCcceeEEEEE-CC-eEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 280 RTWEWSK-----VKK-IGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 280 ~t~~W~~-----~~~-~g~~P~~R~g~s~~~~-~~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
.+.+-.. +.. +|. | ..-.++... ++ ++|+|=|. ..|.||..+.+
T Consensus 126 ~~~~v~~gyPk~i~~~~gi-p--~~idaAf~~~~~~~~YfFkg~----------------~y~r~d~~~~~ 177 (196)
T 3c7x_A 126 ELRAVDSEYPKNIKVWEGI-P--ESPRGSFMGSDEVFTYFYKGN----------------KYWKFNNQKLK 177 (196)
T ss_dssp TTTEECTTCSEEGGGSBTC-C--SSCSEEEECTTSSEEEEEETT----------------EEEEEETTTTE
T ss_pred CcccccCCCCccHHHCCCc-C--CCcceeEEecCCCEEEEEECC----------------EEEEEECCcce
Confidence 6643211 111 121 2 112233333 44 89999764 37899987754
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.58 E-value=0.27 Score=51.96 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=25.0
Q ss_pred cEEEEEcCCC--cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCC--cEEE
Q 005655 102 DLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQ 170 (685)
Q Consensus 102 dv~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~--~W~~ 170 (685)
.|+++|..++ .|+.-. . +. . .+.++.++.+|+.|+.. ..++.||..++ .|..
T Consensus 20 ~v~a~d~~tG~~~W~~~~-~--~~-~--s~p~~~~g~~~v~~s~d-----------g~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 20 SLHAVSKRTGSIKWTLKE-D--PV-L--QVPTHVEEPAFLPDPND-----------GSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp EEEEEETTTCCEEEEEEC-C--CS-C--CCC-----CCEEECTTT-----------CCEEEC-----CCSEEC
T ss_pred EEEEEECCCCCEEEEecC-C--Cc-e--ecceEcCCCEEEEeCCC-----------CEEEEEECCCCceeeee
Confidence 6899998877 477543 1 11 1 12233456677776432 35888998765 4653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=87.49 E-value=8.1 Score=43.71 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=47.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCcc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~ 151 (685)
.++.+.| +++.++++..............++++|+.+.+.+.+........+..+....-+++.++|+..
T Consensus 64 ~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-------- 133 (723)
T 1xfd_A 64 IRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-------- 133 (723)
T ss_dssp SEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--------
T ss_pred ceEEECC--CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--------
Confidence 4566676 667666665311111112346899999998877666543211111111111224544455432
Q ss_pred ccccCeEEEEECCCCcEEEccc
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
+.+|++|+.++....+..
T Consensus 134 ----~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 134 ----NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp ----TEEEEESSSSSCCEEEEC
T ss_pred ----CeEEEEECCCCceEEEec
Confidence 368889988887766654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.07 E-value=22 Score=42.09 Aligned_cols=110 Identities=11% Similarity=0.110 Sum_probs=58.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCcc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~ 151 (685)
.++++.| ++.+++.|+. + ..+++|+..+..-..... ....-.+++...+.+++.|+..
T Consensus 21 ~~lafsp--dg~~lAsgs~--D-------g~I~lw~~~~~~~~~~~~----~~~~V~~l~fspg~~L~S~s~D------- 78 (902)
T 2oaj_A 21 IAAAFDF--TQNLLAIATV--T-------GEVHIYGQQQVEVVIKLE----DRSAIKEMRFVKGIYLVVINAK------- 78 (902)
T ss_dssp EEEEEET--TTTEEEEEET--T-------SEEEEECSTTCEEEEECS----SCCCEEEEEEETTTEEEEEETT-------
T ss_pred EEEEECC--CCCEEEEEeC--C-------CEEEEEeCCCcEEEEEcC----CCCCEEEEEEcCCCEEEEEECc-------
Confidence 4566676 5778888873 2 357788877655432211 1111223333345555555532
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
+.+.++|+.+......-. .+ . .-.++.+ ++..++.|+.+ ..|.+||+.+..-
T Consensus 79 ----~~v~lWd~~~~~~~~~~~--~~-~--~V~~v~~sp~g~~l~sgs~d---------g~V~lwd~~~~~~ 132 (902)
T 2oaj_A 79 ----DTVYVLSLYSQKVLTTVF--VP-G--KITSIDTDASLDWMLIGLQN---------GSMIVYDIDRDQL 132 (902)
T ss_dssp ----CEEEEEETTTCSEEEEEE--CS-S--CEEEEECCTTCSEEEEEETT---------SCEEEEETTTTEE
T ss_pred ----CeEEEEECCCCcEEEEEc--CC-C--CEEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcc
Confidence 458888988775432211 11 1 1122333 45555666542 4678889887654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.70 E-value=13 Score=37.12 Aligned_cols=106 Identities=12% Similarity=0.096 Sum_probs=57.6
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
+.+++.|+.. ..+.+||+.+........ .......-..+.+ ++.+++.|+.+ ..|.
T Consensus 54 g~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d---------g~v~ 111 (368)
T 3mmy_A 54 GNFLIAGSWA-----------NDVRCWEVQDSGQTIPKA--QQMHTGPVLDVCWSDDGSKVFTASCD---------KTAK 111 (368)
T ss_dssp SEEEEEEETT-----------SEEEEEEECTTSCEEEEE--EEECSSCEEEEEECTTSSEEEEEETT---------SEEE
T ss_pred ceEEEEECCC-----------CcEEEEEcCCCCceeEEE--eccccCCEEEEEECcCCCEEEEEcCC---------CcEE
Confidence 3788887753 347788887633322111 1111111222333 55566666642 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
+||+.+.....+... ..+.....+... ++.+++.|+.++. +.+||+.+..
T Consensus 112 iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~----------------i~vwd~~~~~ 162 (368)
T 3mmy_A 112 MWDLSSNQAIQIAQH-----DAPVKTIHWIKAPNYSCVMTGSWDKT----------------LKFWDTRSSN 162 (368)
T ss_dssp EEETTTTEEEEEEEC-----SSCEEEEEEEECSSCEEEEEEETTSE----------------EEEECSSCSS
T ss_pred EEEcCCCCceeeccc-----cCceEEEEEEeCCCCCEEEEccCCCc----------------EEEEECCCCc
Confidence 999988876654332 222222222213 6678888887654 7788876653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.55 E-value=33 Score=35.64 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=38.6
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.+++.|+. + +.+.+||+.+.+-...-.. +.....-.++.+ ++.+++.|+.. ..+
T Consensus 181 ~~~~l~~~~~--d-------~~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~d-----------g~i 238 (437)
T 3gre_A 181 EKSLLVALTN--L-------SRVIIFDIRTLERLQIIEN--SPRHGAVSSICIDEECCVLILGTTR-----------GII 238 (437)
T ss_dssp SCEEEEEEET--T-------SEEEEEETTTCCEEEEEEC--CGGGCCEEEEEECTTSCEEEEEETT-----------SCE
T ss_pred CCCEEEEEeC--C-------CeEEEEeCCCCeeeEEEcc--CCCCCceEEEEECCCCCEEEEEcCC-----------CeE
Confidence 4667777762 2 3688999988764422111 111112223333 46677777753 348
Q ss_pred EEEECCCCcEEE
Q 005655 159 WMLDLKTNQWEQ 170 (685)
Q Consensus 159 ~~yD~~t~~W~~ 170 (685)
.+||+.+.....
T Consensus 239 ~iwd~~~~~~~~ 250 (437)
T 3gre_A 239 DIWDIRFNVLIR 250 (437)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEEcCCccEEE
Confidence 899998866543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=86.54 E-value=29 Score=35.02 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=49.1
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcce-eEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSA-HQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~-ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.+++||+.+.++..+.......+... ..+++. ++.+|+.. ...... .....+|+|+ +.+...+... . .
T Consensus 110 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~-~~~~~~----~~~~~l~~~~--~g~~~~~~~~-~--~ 179 (326)
T 2ghs_A 110 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGT-MGRKAE----TGAGSIYHVA--KGKVTKLFAD-I--S 179 (326)
T ss_dssp EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEE-EETTCC----TTCEEEEEEE--TTEEEEEEEE-E--S
T ss_pred CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEe-CCCcCC----CCceEEEEEe--CCcEEEeeCC-C--c
Confidence 48999999998887654321111111 222222 46777643 211100 1235799999 5666654321 0 1
Q ss_pred CccceEEEE-CC-EEEEEccccCCCCceeeeceEEEEEcC
Q 005655 180 RSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 180 Rsgh~~v~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
. ..+++.. ++ .||+.... .+.|++||+.
T Consensus 180 ~-~~~i~~s~dg~~lyv~~~~---------~~~I~~~d~~ 209 (326)
T 2ghs_A 180 I-PNSICFSPDGTTGYFVDTK---------VNRLMRVPLD 209 (326)
T ss_dssp S-EEEEEECTTSCEEEEEETT---------TCEEEEEEBC
T ss_pred c-cCCeEEcCCCCEEEEEECC---------CCEEEEEEcc
Confidence 1 1223332 33 67776432 2578999875
|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=86.22 E-value=14 Score=38.83 Aligned_cols=110 Identities=13% Similarity=0.237 Sum_probs=60.5
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCC--cE-EEcccCCCCCCC-ccceEEEE--CCEEEEEccccCCCCceee
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QW-EQLNLKGCPSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRY 207 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~--~W-~~~~~~g~P~~R-sgh~~v~~--~~~lyv~GG~~~~~~~~~~ 207 (685)
.+.+|+|-| +.+|+|+.... .+ ..|...|+|..- .--+++.+ ++++|+|-|
T Consensus 236 ~g~~~fFkg-------------~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG---------- 292 (365)
T 3ba0_A 236 RNQVFLFKD-------------DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD---------- 292 (365)
T ss_dssp GTEEEEEET-------------TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET----------
T ss_pred CCEEEEEeC-------------CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC----------
Confidence 689999977 45788865422 11 233332345421 22234444 479999977
Q ss_pred eceEEEEEcCCCceEEeccCC----CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc
Q 005655 208 YNDLYVFDLDQFKWQEIKPRF----GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (685)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~----~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (685)
+..|+||..+.+-..--+.+ -..+|. ... ++... ++.+|+|=|. ..|+||..+.
T Consensus 293 -~~yw~yd~~~~~v~~gyPk~I~~~f~g~p~-~iD-aA~~~~~g~~YfFkg~------------------~ywr~d~~~~ 351 (365)
T 3ba0_A 293 -NQYWRYDERRQMMDPGYPKLITKNFQGIGP-KID-AVFYSKNKYYYFFQGS------------------NQFEYDFLLQ 351 (365)
T ss_dssp -TEEEEEETTTTEECSSCCCCHHHHSTTCCS-SCS-EEEEETTTEEEEEETT------------------EEEEEETTTT
T ss_pred -CEEEEEeCCcceecCCCCcchhhcCCCCCC-ccc-eeeEecCCcEEEEeCC------------------EEEEEECCcc
Confidence 46799998765311100000 001121 122 23333 8889998663 3889998877
Q ss_pred eeEEe
Q 005655 283 EWSKV 287 (685)
Q Consensus 283 ~W~~~ 287 (685)
+-..+
T Consensus 352 ~v~~~ 356 (365)
T 3ba0_A 352 RITKT 356 (365)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 66553
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=86.07 E-value=35 Score=35.52 Aligned_cols=74 Identities=8% Similarity=-0.086 Sum_probs=40.1
Q ss_pred CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCe--EEEecceecccCC
Q 005655 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR--ALLFGGVVDMEMK 321 (685)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~--iyvfGG~~~~~~~ 321 (685)
++.+|+....... .......+.++++|+.+.+-...-+ .+...+++++- +++ +|+..+.
T Consensus 278 ~~~lyV~~~~~~~-------~~~~~~~~~V~VID~~t~~vv~~i~-----~g~~p~~i~~s~Dg~~~l~v~~~~------ 339 (373)
T 2mad_H 278 SDGIYLLTSEQSA-------WKLHAAAKEVTSVTGLVGQTSSQIS-----LGHDVDAISVAQDGGPDLYALSAG------ 339 (373)
T ss_pred CCEEEEEeccCCc-------ccccCCCCeEEEEECCCCEEEEEEE-----CCCCcCeEEECCCCCeEEEEEcCC------
Confidence 6788887542111 0001123579999998876533222 22223445544 444 4443322
Q ss_pred ccccccccCCcEEEEECCCCcEE
Q 005655 322 GDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
.++|.+||+.+.+=.
T Consensus 340 --------~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 340 --------TEVLHIYDAGAGDQD 354 (373)
T ss_pred --------CCeEEEEECCCCCEE
Confidence 367999999886544
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=85.74 E-value=37 Score=35.84 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=12.2
Q ss_pred eeEEEEE-CCEEEEEcC
Q 005655 127 AHQAVSW-KNYLYIFGG 142 (685)
Q Consensus 127 ~ha~v~~-~~~iyvfGG 142 (685)
.|+++.. ++.||.+|-
T Consensus 131 ~h~~alt~~G~v~~wG~ 147 (406)
T 4d9s_A 131 SHCLAVTMEGEVQSWGR 147 (406)
T ss_dssp SEEEEEETTSCEEEEEC
T ss_pred hheEEEcCCCcEEEeCC
Confidence 5666665 689999994
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=85.64 E-value=29 Score=37.59 Aligned_cols=105 Identities=5% Similarity=-0.069 Sum_probs=52.3
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~ 267 (685)
++.+++.|+.+ ..+.+||.....-..+... .. .-.+++.. ++.+++.|+.++.
T Consensus 437 d~~~l~~~~~d---------~~v~~w~~~~~~~~~~~~~-----~~--~v~~~~~spd~~~las~~~d~~---------- 490 (577)
T 2ymu_A 437 DDQTIASASDD---------KTVKLWNRNGQLLQTLTGH-----SS--SVRGVAFSPDGQTIASASDDKT---------- 490 (577)
T ss_dssp TSSEEEEEETT---------SEEEEEETTSCEEEEEECC-----SS--CEEEEEECTTSCEEEEEETTSE----------
T ss_pred CCCEEEEEcCC---------CEEEEEECCCCEEEEEcCC-----CC--CEEEEEEcCCCCEEEEEeCCCE----------
Confidence 56666666642 3577788755444333322 11 11223333 6677777776554
Q ss_pred CceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
+.+||.....-..+.. .... -.++++. ++++++.||.. ..|.+||.....-.
T Consensus 491 ------i~iw~~~~~~~~~~~~----h~~~-v~~l~~s~dg~~l~s~~~d--------------g~v~lwd~~~~~~~ 543 (577)
T 2ymu_A 491 ------VKLWNRNGQLLQTLTG----HSSS-VRGVAFSPDGQTIASASDD--------------KTVKLWNRNGQLLQ 543 (577)
T ss_dssp ------EEEEETTSCEEEEEEC----CSSC-EEEEEECTTSSCEEEEETT--------------SEEEEECTTSCEEE
T ss_pred ------EEEEcCCCCEEEEEeC----CCCC-EEEEEEcCCCCEEEEEECc--------------CEEEEEeCCCCEEE
Confidence 5666754433222221 1111 1223333 56777777653 24888886544333
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=85.48 E-value=31 Score=34.38 Aligned_cols=95 Identities=7% Similarity=0.096 Sum_probs=51.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCc---EEEccc--CC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQLNL--KG 175 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~---W~~~~~--~g 175 (685)
.+++|++.+.+...+... |..+.....+.. ++.+|+.-. ....+|++|+.+.. |..-.. ..
T Consensus 96 ~v~~~d~~~g~~~~~~~~--~~~~~~~g~~~~~~~~~~v~d~-----------~~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTL--PDAIFLNGITPLSDTQYLTADS-----------YRGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp EEEEEECTTSCEEEEEEC--TTCSCEEEEEESSSSEEEEEET-----------TTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred eEEEEcCCCCeEEEEEeC--CCccccCcccccCCCcEEEEEC-----------CCCeEEEEeCCCCcEeEEEECCccccc
Confidence 378889888887766442 334544555544 466777532 12579999987652 221110 00
Q ss_pred CCCC--CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 176 CPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 176 ~P~~--Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
.+.. .....+..-++.||+.-- ..+.|++|++..
T Consensus 163 ~~~~~~~~pngis~dg~~lyv~d~---------~~~~I~~~~~~~ 198 (306)
T 2p4o_A 163 NSESVFPAANGLKRFGNFLYVSNT---------EKMLLLRIPVDS 198 (306)
T ss_dssp STTCCSCSEEEEEEETTEEEEEET---------TTTEEEEEEBCT
T ss_pred cccCCCCcCCCcCcCCCEEEEEeC---------CCCEEEEEEeCC
Confidence 1111 112233333567887532 146799999864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=84.98 E-value=27 Score=34.82 Aligned_cols=108 Identities=8% Similarity=0.028 Sum_probs=57.9
Q ss_pred CEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCc
Q 005655 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGI 269 (685)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (685)
+.+++.|+.+ ..|.+||+.+..-...-.. . ..+.....+...++.+++.|+.++.
T Consensus 85 ~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~-~---~~~i~~~~~~~~~~~~l~s~~~dg~------------ 139 (366)
T 3k26_A 85 HPLLAVAGSR---------GIIRIINPITMQCIKHYVG-H---GNAINELKFHPRDPNLLLSVSKDHA------------ 139 (366)
T ss_dssp CEEEEEEETT---------CEEEEECTTTCCEEEEEES-C---CSCEEEEEECSSCTTEEEEEETTSC------------
T ss_pred CCEEEEecCC---------CEEEEEEchhceEeeeecC-C---CCcEEEEEECCCCCCEEEEEeCCCe------------
Confidence 5677777753 4688888877653322111 0 1111221121115678888887665
Q ss_pred eeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 270 IHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 270 ~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
+.+||+.+..-...-.. .......-.++++. ++..++.|+.. +.|.+||+.+.
T Consensus 140 ----i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~ 193 (366)
T 3k26_A 140 ----LRLWNIQTDTLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMD--------------HSLKLWRINSK 193 (366)
T ss_dssp ----EEEEETTTTEEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETT--------------SCEEEEESCSH
T ss_pred ----EEEEEeecCeEEEEecc-cccccCceeEEEECCCCCEEEEecCC--------------CCEEEEECCCC
Confidence 78889887654443210 01112222333443 46667777653 34889998754
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=84.87 E-value=10 Score=41.14 Aligned_cols=150 Identities=15% Similarity=0.247 Sum_probs=77.0
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEE--ecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccC
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV--ISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYK 156 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~--l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~ 156 (685)
.+++|+|=|. -+|+++.....+.. +...-+-.|..--++... .+.+|+|=| +
T Consensus 272 ~ge~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~Wp~LP~~iDAa~~~~~~g~~~fFKg-------------~ 327 (450)
T 1su3_A 272 RGEVMFFKDR-----------FYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKG-------------N 327 (450)
T ss_dssp TTEEEEEETT-----------EEEECCTTSSSCEEEEGGGTCTTSCSSCCEEEEEGGGTEEEEEET-------------T
T ss_pred CCeEEEEeCC-----------EEEEEcCCCCcccceehhHhccCCCCCeeEEEEEcCCCeEEEEeC-------------C
Confidence 6899999884 34555554433321 111110112222233333 589999977 4
Q ss_pred eEEEEECCCC--cE-EEcc-cCCCCCCCcc-ceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceE-----Ee
Q 005655 157 DFWMLDLKTN--QW-EQLN-LKGCPSPRSG-HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-----EI 224 (685)
Q Consensus 157 dv~~yD~~t~--~W-~~~~-~~g~P~~Rsg-h~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-----~v 224 (685)
.+|+|+..+- .+ ..+. ..+.|..-.+ -+++.+ ++++|+|-| +.+|+||..+.+-. .|
T Consensus 328 ~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-----------~~yw~yd~~~~~~~~gYPk~I 396 (450)
T 1su3_A 328 KYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-----------NKYWRYDEYKRSMDPGYPKMI 396 (450)
T ss_dssp EEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEECSSCSEEH
T ss_pred EEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-----------CEEEEEeCCCccccCCCCcch
Confidence 6888875321 01 1222 1233432112 233344 589999977 46899997654211 11
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEE
Q 005655 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (685)
Q Consensus 225 ~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (685)
...-.+ +| .... +++..++.+|+|-|. ..|+||..+.+=..
T Consensus 397 ~~~fpg-ip-~~iD-AA~~~~g~~YFFkg~------------------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 397 AHDFPG-IG-HKVD-AVFMKDGFFYFFHGT------------------RQYKFDPKTKRILT 437 (450)
T ss_dssp HHHSTT-SC-SCCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred hhcCCC-CC-CCcc-EEEEcCCeEEEEeCC------------------EEEEEECCcceEec
Confidence 100001 12 1222 233358899999764 37899987766544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=84.51 E-value=34 Score=38.20 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=46.5
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCC-CCCC---ccceEEEECCEEEEEccccCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC-PSPR---SGHRMVLYKHKIIVFGGFYDTL 202 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~-P~~R---sgh~~v~~~~~lyv~GG~~~~~ 202 (685)
+-++.++.|||.+.. +.++.||..|++ |+.-..... ..+. ...+.++.++.||+...
T Consensus 63 ~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~----- 125 (582)
T 1flg_A 63 QAIVSDGVIYVTASY------------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL----- 125 (582)
T ss_dssp CCEEETTEEEEEETT------------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-----
T ss_pred ccEEECCEEEEEcCC------------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-----
Confidence 345679999998652 248899998874 887443111 0011 12334567888887432
Q ss_pred CceeeeceEEEEEcCCCc--eEEe
Q 005655 203 REVRYYNDLYVFDLDQFK--WQEI 224 (685)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~--W~~v 224 (685)
...|+.+|..|.+ |+.-
T Consensus 126 -----dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 126 -----DASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp -----TTEEEEEESSSCCEEEEEE
T ss_pred -----CCEEEEEECCCCCEEeeec
Confidence 2468999998764 8764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=84.39 E-value=37 Score=34.23 Aligned_cols=62 Identities=8% Similarity=0.033 Sum_probs=32.1
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.+++.|+. + ..+.+||+.+.+.. .+... ...-.+++.. ++..++.||.. ..+
T Consensus 87 ~~~~l~s~s~--D-------~~v~lwd~~~~~~~~~~~~h----~~~v~~v~~sp~~~~l~s~~~d-----------~~i 142 (343)
T 2xzm_R 87 ENCFAISSSW--D-------KTLRLWDLRTGTTYKRFVGH----QSEVYSVAFSPDNRQILSAGAE-----------REI 142 (343)
T ss_dssp STTEEEEEET--T-------SEEEEEETTSSCEEEEEECC----CSCEEEEEECSSTTEEEEEETT-----------SCE
T ss_pred CCCEEEEEcC--C-------CcEEEEECCCCcEEEEEcCC----CCcEEEEEECCCCCEEEEEcCC-----------CEE
Confidence 4556666652 2 35788898877543 22211 1111222332 45566667643 346
Q ss_pred EEEECCCC
Q 005655 159 WMLDLKTN 166 (685)
Q Consensus 159 ~~yD~~t~ 166 (685)
.+||+...
T Consensus 143 ~~wd~~~~ 150 (343)
T 2xzm_R 143 KLWNILGE 150 (343)
T ss_dssp EEEESSSC
T ss_pred EEEeccCC
Confidence 77787643
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=84.36 E-value=7.7 Score=42.16 Aligned_cols=153 Identities=10% Similarity=0.168 Sum_probs=79.7
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcc--c--CCCCCCCccceEEEE--CCEEEEEccccCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN--L--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~--~--~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~ 202 (685)
+++.+.+.+|+|-| +-+|+++.....+.... . .++|.. . -++..+ ++.+|+|=|
T Consensus 267 Ai~~~~ge~y~Fkg-------------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~-i-DAa~~~~~~g~~~fFKg----- 326 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------------RFYMRTNPFYPEVELNFISVFWPQLPNG-L-EAAYEFADRDEVRFFKG----- 326 (450)
T ss_dssp EEEEETTEEEEEET-------------TEEEECCTTSSSCEEEEGGGTCTTSCSS-C-CEEEEEGGGTEEEEEET-----
T ss_pred eEEecCCeEEEEeC-------------CEEEEEcCCCCcccceehhHhccCCCCC-e-eEEEEEcCCCeEEEEeC-----
Confidence 55567899999987 35788876654443221 1 112321 1 223333 689999977
Q ss_pred CceeeeceEEEEEcCCCc--e-EEec-cCCCCCCCC--CccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEE
Q 005655 203 REVRYYNDLYVFDLDQFK--W-QEIK-PRFGSMWPS--PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLW 275 (685)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~--W-~~v~-~~~~~~~P~--~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~ 275 (685)
+.+|+|+..+-. + ..+. .. .+|. .....++... ++++|+|=|. .+|
T Consensus 327 ------~~~W~~~~~~~~~gyP~~i~~~~---g~P~~~~~IDAA~~~~~~~k~yfFkG~------------------~yw 379 (450)
T 1su3_A 327 ------NKYWAVQGQNVLHGYPKDIYSSF---GFPRTVKHIDAALSEENTGKTYFFVAN------------------KYW 379 (450)
T ss_dssp ------TEEEEEETTEECTTCSEEHHHHH---CCCTTCCCCCEEEEETTTTEEEEEETT------------------EEE
T ss_pred ------CEEEEecCCcccCCCceeeehhh---cCCCCCCccceEEEEcCCCeEEEEeCC------------------EEE
Confidence 356777642200 0 1111 00 0122 1222222222 6899999763 388
Q ss_pred EEeCCCceeEE-----eecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 276 SLDPRTWEWSK-----VKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 276 ~yd~~t~~W~~-----~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
+||..+.+-.. +.. +.+-.+..--++...++++|+|=|. ..|.||..+.+-..
T Consensus 380 ~yd~~~~~~~~gYPk~I~~-~fpgip~~iDAA~~~~g~~YFFkg~----------------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 380 RYDEYKRSMDPGYPKMIAH-DFPGIGHKVDAVFMKDGFFYFFHGT----------------RQYKFDPKTKRILT 437 (450)
T ss_dssp EEETTTTEECSSCSEEHHH-HSTTSCSCCSEEEEETTEEEEEETT----------------EEEEEETTTTEEEE
T ss_pred EEeCCCccccCCCCcchhh-cCCCCCCCccEEEEcCCeEEEEeCC----------------EEEEEECCcceEec
Confidence 99876533211 110 0111121122444568999999774 37899988776554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=84.15 E-value=17 Score=41.63 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=43.9
Q ss_pred EEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCcc
Q 005655 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 74 ~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~ 151 (685)
..+.| +++.++|+......-+.....++|+||+.+++...+.... . . ...+.+ +++.++|+-
T Consensus 67 ~~~Sp--dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~--~-~--~~~~~~SPdG~~la~~~--------- 130 (740)
T 4a5s_A 67 YSISP--DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIP--N-N--TQWVTWSPVGHKLAYVW--------- 130 (740)
T ss_dssp EEECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC--T-T--EEEEEECSSTTCEEEEE---------
T ss_pred eEECC--CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCC--C-c--ceeeEECCCCCEEEEEE---------
Confidence 45566 5666666653222222234578999999999876654421 1 1 122222 343334431
Q ss_pred ccccCeEEEEECCCCcEEEccc
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
-+++|++|+.++.-.++..
T Consensus 131 ---~~~i~~~~~~~~~~~~lt~ 149 (740)
T 4a5s_A 131 ---NNDIYVKIEPNLPSYRITW 149 (740)
T ss_dssp ---TTEEEEESSTTSCCEECCS
T ss_pred ---CCeEEEEECCCCceEEEcC
Confidence 1467788877776666654
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.06 E-value=22 Score=37.36 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=13.3
Q ss_pred cceEEEEeccCCCEEEEEcC
Q 005655 70 SNCSLNINPLKETELILYGG 89 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG 89 (685)
..|++++.. ++.||.+|-
T Consensus 116 ~~h~~al~~--~G~v~~wG~ 133 (389)
T 3kci_A 116 GKHCLALSS--EGEVYSWGE 133 (389)
T ss_dssp CSEEEEEET--TSCEEEEEC
T ss_pred CCeEEEEcC--CCCEEEEeC
Confidence 357777664 689999995
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=83.49 E-value=18 Score=36.04 Aligned_cols=109 Identities=8% Similarity=0.053 Sum_probs=52.0
Q ss_pred cEEEEEcCCCcEEEecCCCCCCC-cceeEEEEE-CCEEEEE----cCccCC--CCCccccccCeEEEEECCCCcEEEccc
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPP-RSAHQAVSW-KNYLYIF----GGEFTS--PNQERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~-R~~ha~v~~-~~~iyvf----GG~~~s--~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
.|++|++. .+...+.......+ ..-+.+++. ++.||+. |-.... ...........+++||+.++.++.+.
T Consensus 108 ~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~- 185 (305)
T 3dr2_A 108 AITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA- 185 (305)
T ss_dssp EEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred EEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence 57788876 66665543210000 111223333 5788885 422100 00000011357999999888887764
Q ss_pred CCCCCCCccceEEEE-C-CEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 174 KGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 174 ~g~P~~Rsgh~~v~~-~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
+...+ .+++.. + ..||+....... ...+.|++|++....
T Consensus 186 -~~~~p---~gl~~spdg~~lyv~~~~~~~----~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 186 -DLDHP---NGLAFSPDEQTLYVSQTPEQG----HGSVEITAFAWRDGA 226 (305)
T ss_dssp -EESSE---EEEEECTTSSEEEEEECCC-------CCCEEEEEEEETTE
T ss_pred -cCCCC---cceEEcCCCCEEEEEecCCcC----CCCCEEEEEEecCCC
Confidence 12111 223333 3 357776432100 012578999887554
|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=83.46 E-value=25 Score=36.94 Aligned_cols=154 Identities=10% Similarity=0.158 Sum_probs=79.8
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcE--EEccc--CCCCCCCccceEEEE--CCEEEEEccccCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW--EQLNL--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W--~~~~~--~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~ 202 (685)
+++.+.+.+|+|=| +.+|+++.....- ..+.. .++| .... ++..+ ++.+|+|-|
T Consensus 185 Av~~~~g~~~fFkg-------------~~~Wr~~~~~~~~~p~~I~~~wpgLP-~~iD-Aa~~~~~~g~~~fFkg----- 244 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------------RFFWLKVSERPKTSVNLISSLWPTLP-SGIE-AAYEIEARNQVFLFKD----- 244 (365)
T ss_dssp CEEEETTEEEEEET-------------TEEEECCSSCCCCCEEEHHHHCSSCC-SSCC-EEEEEGGGTEEEEEET-----
T ss_pred eEEEcCCeEEEEeC-------------CEEEEEcCCCccCCccchhhhccCCC-CCcc-EEEEecCCCEEEEEeC-----
Confidence 45556899999977 4577876544221 11211 1234 1222 33333 789999977
Q ss_pred CceeeeceEEEEEcCCCc--e-EEeccCCCCCCCCC--ccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEE
Q 005655 203 REVRYYNDLYVFDLDQFK--W-QEIKPRFGSMWPSP--RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (685)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~--W-~~v~~~~~~~~P~~--Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (685)
+.+|+|+..... + ..|... .+|.. ....++... ++++|+|=|. ..|+
T Consensus 245 ------~~yWr~~~~~~~~gyPk~I~~~---GlP~~~~~IDAA~~~~~~~~~yfFkG~------------------~yw~ 297 (365)
T 3ba0_A 245 ------DKYWLISNLRPEPNYPKSIHSF---GFPNFVKKIDAAVFNPRFYRTYFFVDN------------------QYWR 297 (365)
T ss_dssp ------TEEEECSTTSCTTTCSEETTTT---TCCTTCCCCCEEEEETTTTEEEEEETT------------------EEEE
T ss_pred ------CEEEEEcCCcccCCCCceeeec---cCCCCCCCcCEEEEeCCCCEEEEEECC------------------EEEE
Confidence 356777643211 1 111111 12331 122222222 6899999663 3889
Q ss_pred EeCCCceeEEeec----CCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 277 LDPRTWEWSKVKK----IGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 277 yd~~t~~W~~~~~----~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
||..+.+-..--+ .+.+..+..--++... ++++|+|=|. ..|.||..+.+-..
T Consensus 298 yd~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg~----------------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 298 YDERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQGS----------------NQFEYDFLLQRITK 355 (365)
T ss_dssp EETTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEETT----------------EEEEEETTTTEEEE
T ss_pred EeCCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeCC----------------EEEEEECCccEEec
Confidence 9976653211000 0011112222344444 8899999774 38999998877665
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=83.15 E-value=52 Score=35.50 Aligned_cols=169 Identities=7% Similarity=-0.004 Sum_probs=79.8
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.+.++|.....-..+.... ..-.+++.. ++..++.|+.. ..+.+||.....-..+.. . .
T Consensus 326 ~i~~w~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~~~~~d-----------g~v~~~~~~~~~~~~~~~--~---~ 385 (577)
T 2ymu_A 326 TVKLWNRNGQHLQTLTGHS----SSVWGVAFSPDGQTIASASDD-----------KTVKLWNRNGQLLQTLTG--H---S 385 (577)
T ss_dssp CEEEEETTSCEEEEECCCS----SCEEEEEECTTSSEEEEEETT-----------SEEEEEETTCCEEEEEEC--C---S
T ss_pred eEEEEeCCCCeeEEEeCCC----CCEEEEEECCCCCEEEEEeCC-----------CEEEEEcCCCCEEEEecC--C---C
Confidence 4566776665554443211 111222222 45666666642 346677765444333322 1 1
Q ss_pred ccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 181 sgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
..-..+.+ ++.+++.|+.+ ..|.+||.....-..+... ..+ -.+++.. ++.+++.|+.++.
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d---------~~v~~~~~~~~~~~~~~~~-----~~~--v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDD---------KTVKLWNRNGQLLQTLTGH-----SSS--VWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETT---------SEEEEECTTCCEEEEEECC-----SSC--EEEEEECTTSSEEEEEETTSE
T ss_pred CCeEEEEECCCCCEEEEEeCC---------CEEEEEeCCCCEEEEecCC-----CCC--eEEEEECCCCCEEEEEcCCCE
Confidence 11122333 45666666642 3567777544332222221 111 1122222 5667777766543
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEE
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGF 336 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~y 336 (685)
+.+||.....-..+.. ....-.++++. ++++++.|+.. ..|.+|
T Consensus 450 ----------------v~~w~~~~~~~~~~~~-----~~~~v~~~~~spd~~~las~~~d--------------~~i~iw 494 (577)
T 2ymu_A 450 ----------------VKLWNRNGQLLQTLTG-----HSSSVRGVAFSPDGQTIASASDD--------------KTVKLW 494 (577)
T ss_dssp ----------------EEEEETTSCEEEEEEC-----CSSCEEEEEECTTSCEEEEEETT--------------SEEEEE
T ss_pred ----------------EEEEECCCCEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCC--------------CEEEEE
Confidence 5667765544443332 11112233333 66777777643 247788
Q ss_pred ECCCC
Q 005655 337 QLDNH 341 (685)
Q Consensus 337 d~~t~ 341 (685)
|....
T Consensus 495 ~~~~~ 499 (577)
T 2ymu_A 495 NRNGQ 499 (577)
T ss_dssp ETTSC
T ss_pred cCCCC
Confidence 86543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=82.60 E-value=48 Score=34.28 Aligned_cols=204 Identities=12% Similarity=0.108 Sum_probs=100.1
Q ss_pred eEEEE---eccCCCEEEEEcC---ee-cCCCceeeeccEEEEEcC---CC--cEEE-ecCCC------CCCCcceeEEEE
Q 005655 72 CSLNI---NPLKETELILYGG---EF-YNGNKTYVYGDLYRYDVE---KQ--EWKV-ISSPN------SPPPRSAHQAVS 132 (685)
Q Consensus 72 ~s~~~---~p~~~~~L~vfGG---~~-~~g~~~~~~ndv~~yd~~---~~--~W~~-l~s~~------~P~~R~~ha~v~ 132 (685)
.++.+ .| .++|+|+-- .+ ..+....-.+.|++||+. ++ .|.. ++... .+....+..-++
T Consensus 66 sGl~~~~~D~--~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva 143 (334)
T 2p9w_A 66 SGLSLLTHDN--SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA 143 (334)
T ss_dssp EEEEESSSSS--CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred eEEEEeccCC--CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence 45555 35 578888621 11 112221224679999988 43 4652 21100 000112233344
Q ss_pred E--CCEEEEEcCccCCCCCccccccCeEEEEECCCCc---EEEcccCCCCCCCccceE-EEE--CCEEEEEccccCCCCc
Q 005655 133 W--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQLNLKGCPSPRSGHRM-VLY--KHKIIVFGGFYDTLRE 204 (685)
Q Consensus 133 ~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~---W~~~~~~g~P~~Rsgh~~-v~~--~~~lyv~GG~~~~~~~ 204 (685)
+ .+.+||.+... +..+|++++.... |-.-.+ .+..|.|... ++. ++.|++..+ .
T Consensus 144 vD~~GnaYVt~s~~----------~~~I~rV~pdG~~~~~~~~~~~--~~~~~~G~nGIv~~pdg~~Liv~~~-~----- 205 (334)
T 2p9w_A 144 QDRDGNSYVAFALG----------MPAIARVSADGKTVSTFAWESG--NGGQRPGYSGITFDPHSNKLIAFGG-P----- 205 (334)
T ss_dssp ECTTSCEEEEEEES----------SCEEEEECTTSCCEEEEEECCC--CSSSCCSCSEEEEETTTTEEEEESS-S-----
T ss_pred ECCCCCEEEeCCCC----------CCeEEEEeCCCCEEeeeeecCC--CcccccCcceEEEeCCCCEEEEEcC-C-----
Confidence 4 58999976531 1459999997542 543222 2334555544 444 446777655 2
Q ss_pred eeeeceEEEEEcCCCceEEeccC--CC-CCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC
Q 005655 205 VRYYNDLYVFDLDQFKWQEIKPR--FG-SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (685)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~--~~-~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (685)
..|+.||+.+-....++.. .. +.++ .-.+....-.++.++++.-... ..+++--..
T Consensus 206 ----g~L~~fD~~~pv~~~v~~~~~G~~~~~~-~~dgilp~~~~G~vllV~~~~~----------------~~~~l~S~D 264 (334)
T 2p9w_A 206 ----RALTAFDVSKPYAWPEPVKINGDFGTLS-GTEKIVTVPVGNESVLVGARAP----------------YAISFRSWD 264 (334)
T ss_dssp ----SSEEEEECSSSSCCCEECEESSCCCCCT-TEEEEEEEEETTEEEEEEEETT----------------EEEEEECSS
T ss_pred ----CeEEEEcCCCCcceeecccccCCccccc-CcccccccccCCEEEEEEcCCC----------------CEEEEECCC
Confidence 4689999874322112111 00 0001 1111111224777766543211 134444344
Q ss_pred ceeEEeecCCCCCCC--cceeEE-EE----ECCeEEEecceec
Q 005655 282 WEWSKVKKIGMPPGP--RAGFSM-CV----HKKRALLFGGVVD 317 (685)
Q Consensus 282 ~~W~~~~~~g~~P~~--R~g~s~-~~----~~~~iyvfGG~~~ 317 (685)
. |......+..|.+ -.+++. ++ .+++||++.+..+
T Consensus 265 g-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~f~ 306 (334)
T 2p9w_A 265 N-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAFFD 306 (334)
T ss_dssp T-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECCGG
T ss_pred C-cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeeecC
Confidence 4 8877655544442 134444 34 4689999987654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=82.19 E-value=44 Score=33.58 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=32.2
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (685)
++.+++.|+.. ..+.+||+.++.....-. .... .-.++.+ ++..++.||.+ ..|
T Consensus 87 ~~~~l~s~s~D-----------~~v~lwd~~~~~~~~~~~--~h~~--~v~~v~~sp~~~~l~s~~~d---------~~i 142 (343)
T 2xzm_R 87 ENCFAISSSWD-----------KTLRLWDLRTGTTYKRFV--GHQS--EVYSVAFSPDNRQILSAGAE---------REI 142 (343)
T ss_dssp STTEEEEEETT-----------SEEEEEETTSSCEEEEEE--CCCS--CEEEEEECSSTTEEEEEETT---------SCE
T ss_pred CCCEEEEEcCC-----------CcEEEEECCCCcEEEEEc--CCCC--cEEEEEECCCCCEEEEEcCC---------CEE
Confidence 35566666643 457888988776432211 0111 1122333 45566667753 357
Q ss_pred EEEEcCC
Q 005655 212 YVFDLDQ 218 (685)
Q Consensus 212 ~~yD~~t 218 (685)
.+||+..
T Consensus 143 ~~wd~~~ 149 (343)
T 2xzm_R 143 KLWNILG 149 (343)
T ss_dssp EEEESSS
T ss_pred EEEeccC
Confidence 7777764
|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} | Back alignment and structure |
|---|
Probab=82.01 E-value=5.5 Score=38.98 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=36.5
Q ss_pred CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee-c--CCCCCC-----CcceeEEEE--ECCeEEEecc
Q 005655 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK-K--IGMPPG-----PRAGFSMCV--HKKRALLFGG 314 (685)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~-~--~g~~P~-----~R~g~s~~~--~~~~iyvfGG 314 (685)
++++|+|-|. .+|+||..+.+...-+ . .+.+.. +..--++.. .++++|+|=|
T Consensus 127 ~gk~yfFkG~------------------~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG 188 (225)
T 3oyo_A 127 GKEVYLFKGN------------------KYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG 188 (225)
T ss_dssp TTEEEEEETT------------------EEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET
T ss_pred CCcEEEEeCC------------------eEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC
Confidence 7899999774 2889997665544310 0 011111 222223333 3789999987
Q ss_pred eecccCCccccccccCCcEEEEECC
Q 005655 315 VVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
. ..|+||..
T Consensus 189 ~----------------~ywr~d~~ 197 (225)
T 3oyo_A 189 Q----------------NYVRIDFT 197 (225)
T ss_dssp T----------------EEEEEECC
T ss_pred C----------------EEEEEeCC
Confidence 4 37999987
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=82.00 E-value=42 Score=33.12 Aligned_cols=89 Identities=11% Similarity=0.262 Sum_probs=44.2
Q ss_pred cEEEEEcC-CCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCC-cEEEcccCCCCC
Q 005655 102 DLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGCPS 178 (685)
Q Consensus 102 dv~~yd~~-~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~-~W~~~~~~g~P~ 178 (685)
.+++||+. ...|...... + ...+.+.. ++.||+... -..+++||+... .|..... .
T Consensus 118 ~l~~~d~~g~~~~~~~~~~----~-~~~~~~~~~~g~l~vgt~------------~~~l~~~d~~g~~~~~~~~~----~ 176 (330)
T 3hxj_A 118 HLYAINTDGTEKWRFKTKK----A-IYATPIVSEDGTIYVGSN------------DNYLYAINPDGTEKWRFKTN----D 176 (330)
T ss_dssp EEEEECTTSCEEEEEECSS----C-CCSCCEECTTSCEEEECT------------TSEEEEECTTSCEEEEEECS----S
T ss_pred EEEEEcCCCCEEEEEcCCC----c-eeeeeEEcCCCEEEEEcC------------CCEEEEECCCCCEeEEEecC----C
Confidence 58889887 3356644221 1 12223344 566776321 145888888722 2554321 1
Q ss_pred CCccceEEE-ECCEEEEEccccCCCCceeeeceEEEEEcCC-CceEEe
Q 005655 179 PRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (685)
Q Consensus 179 ~Rsgh~~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (685)
.. -.+++. -++.||+-. ..+++||... ..|...
T Consensus 177 ~~-~~~~~~d~~g~l~v~t------------~~l~~~d~~g~~~~~~~ 211 (330)
T 3hxj_A 177 AI-TSAASIGKDGTIYFGS------------DKVYAINPDGTEKWNFY 211 (330)
T ss_dssp CC-CSCCEECTTCCEEEES------------SSEEEECTTSCEEEEEC
T ss_pred Cc-eeeeEEcCCCEEEEEe------------CEEEEECCCCcEEEEEc
Confidence 21 222333 366777643 2477888432 345543
|
| >1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=81.97 E-value=14 Score=35.81 Aligned_cols=101 Identities=20% Similarity=0.476 Sum_probs=55.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcE--EEecC--CCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccC
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISS--PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYK 156 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W--~~l~s--~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~ 156 (685)
++++|+|=|. .+|+|+.....+ ..|.. +.+| ..--|+...++++|+|-| +
T Consensus 28 ~g~~yfFkg~-----------~~Wr~~~~~~~~~p~~Is~~wpgLP--~~IDAA~~~~~~~yfFkG-------------~ 81 (219)
T 1hxn_A 28 HGATYVFSGS-----------HYWRLDTNRDGWHSWPIAHQWPQGP--STVDAAFSWEDKLYLIQD-------------T 81 (219)
T ss_dssp TSCEEEEETT-----------EEEESSSSSCTTCCEEGGGTCTTSC--SSCSEEEEETTEEEEEET-------------T
T ss_pred CCcEEEEeCC-----------EEEEEcCCCCCCCceEhhhhccCCC--CCccEEEEECCcEEEecC-------------C
Confidence 5888988873 356655433221 12221 1223 222344445899999977 4
Q ss_pred eEEEEECCCC-cE-----EEccc-CCCCCC--Cc-cceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 157 DFWMLDLKTN-QW-----EQLNL-KGCPSP--RS-GHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 157 dv~~yD~~t~-~W-----~~~~~-~g~P~~--Rs-gh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
.+|+|+..++ +- ..|.. .|+|.. .. --+++.+ ++++|+|-| +..|+||..+
T Consensus 82 ~yw~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~ 144 (219)
T 1hxn_A 82 KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-----------RRLWWLDLKS 144 (219)
T ss_dssp EEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-----------TEEEEEEGGG
T ss_pred EEEEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-----------CEEEEEeCCC
Confidence 6899986532 11 12221 233443 11 2233334 579999988 4579999765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=81.87 E-value=44 Score=33.30 Aligned_cols=106 Identities=14% Similarity=0.139 Sum_probs=54.8
Q ss_pred ccEEEEEcCCCcE-EEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccc-cCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHH-YKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W-~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~-~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
..+|++|+.+++. +.++. + ....++..++.|++.+....... ... ...+|.+| ++.+..+...
T Consensus 152 ~~l~~~d~~~~~~~~~l~~---~---~~~~~~~spdg~~~~~~~~~~~~---~~~~~~~l~~~d--~~~~~~l~~~---- 216 (347)
T 2gop_A 152 TTFWIFDTESEEVIEEFEK---P---RFSSGIWHRDKIVVNVPHREIIP---QYFKFWDIYIWE--DGKEEKMFEK---- 216 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE---E---TTCEEEEETTEEEEEEECCCSSC---CSSCCEEEEEEE--TTEEEEEEEE----
T ss_pred ceEEEEECCCCeEEeeecC---C---CcccccCCCCeEEEEEecccccc---cccccccEEEeC--CCceEEeccC----
Confidence 5799999999887 66654 1 22233334433444443221100 001 35799999 7778776541
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
..+..+.-++..+++++...... ......||++| +..+..+..
T Consensus 217 --~~~~~~spdg~~l~~~~~~~~~~-~~~~~~l~~~d--~~~~~~l~~ 259 (347)
T 2gop_A 217 --VSFYAVDSDGERILLYGKPEKKY-MSEHNKLYIYD--GKEVMGILD 259 (347)
T ss_dssp --ESEEEEEECSSCEEEEECCSSSC-CCSSCEEEEEC--SSCEEESST
T ss_pred --cceeeECCCCCEEEEEEccccCC-ccccceEEEEC--CCceEeccc
Confidence 12222234555444444322100 11245789998 666665543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=81.28 E-value=41 Score=32.54 Aligned_cols=160 Identities=7% Similarity=0.024 Sum_probs=84.9
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
+.+++.|. ++.||+.-.. .+.+++|++....-..+.... .. .-..+++. ++.||+.....
T Consensus 82 ~~ia~d~~-~~~lyv~d~~---------~~~I~~~~~~g~~~~~~~~~~--~~-~P~~i~vd~~~g~lyv~~~~~----- 143 (267)
T 1npe_A 82 EGIALDHL-GRTIFWTDSQ---------LDRIEVAKMDGTQRRVLFDTG--LV-NPRGIVTDPVRGNLYWTDWNR----- 143 (267)
T ss_dssp EEEEEETT-TTEEEEEETT---------TTEEEEEETTSCSCEEEECSS--CS-SEEEEEEETTTTEEEEEECCS-----
T ss_pred cEEEEEec-CCeEEEEECC---------CCEEEEEEcCCCCEEEEEECC--CC-CccEEEEeeCCCEEEEEECCC-----
Confidence 44555542 3567665431 246778887654433332211 11 12344444 58899875321
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
..+.++++++....-..+...+ ...-+++++- +++||+.-.. .+.|++||+....-..+...
T Consensus 144 ----~~~~I~~~~~dg~~~~~~~~~~---~~~P~gia~d~~~~~lyv~d~~---------~~~I~~~~~~g~~~~~~~~~ 207 (267)
T 1npe_A 144 ----DNPKIETSHMDGTNRRILAQDN---LGLPNGLTFDAFSSQLCWVDAG---------THRAECLNPAQPGRRKVLEG 207 (267)
T ss_dssp ----SSCEEEEEETTSCCCEEEECTT---CSCEEEEEEETTTTEEEEEETT---------TTEEEEEETTEEEEEEEEEC
T ss_pred ----CCcEEEEEecCCCCcEEEEECC---CCCCcEEEEcCCCCEEEEEECC---------CCEEEEEecCCCceEEEecC
Confidence 1256888888654433332211 1222334443 5688886432 36789999875432222111
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
. ..| +++++.++.||+.-.... .++++|+.+.+-...-
T Consensus 208 --~--~~P---~gi~~d~~~lyva~~~~~----------------~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 208 --L--QYP---FAVTSYGKNLYYTDWKTN----------------SVIAMDLAISKEMDTF 245 (267)
T ss_dssp --C--CSE---EEEEEETTEEEEEETTTT----------------EEEEEETTTTEEEEEE
T ss_pred --C--CCc---eEEEEeCCEEEEEECCCC----------------eEEEEeCCCCCceEEE
Confidence 1 222 345566889998654332 3889999877655443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=81.08 E-value=47 Score=33.10 Aligned_cols=144 Identities=12% Similarity=0.014 Sum_probs=70.2
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.+++.|+. + ..+.+||+.+++-. .+.... ..-.+++.. ++.+++.|+... .+
T Consensus 76 dg~~l~s~s~--D-------~~v~~wd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~s~D~-----------~i 131 (319)
T 3frx_A 76 DGAYALSASW--D-------KTLRLWDVATGETYQRFVGHK----SDVMSVDIDKKASMIISGSRDK-----------TI 131 (319)
T ss_dssp TSSEEEEEET--T-------SEEEEEETTTTEEEEEEECCS----SCEEEEEECTTSCEEEEEETTS-----------CE
T ss_pred CCCEEEEEeC--C-------CEEEEEECCCCCeeEEEccCC----CcEEEEEEcCCCCEEEEEeCCC-----------eE
Confidence 4566666662 2 35788898887543 222111 111222222 466777777543 36
Q ss_pred EEEECCCCcEEEcccCCCCCCCccceEEEE-------CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCC
Q 005655 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (685)
Q Consensus 159 ~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (685)
.+||+....-..+.. .. .. -.++... ++.+++.||.+ ..|.+||+.+..-...-..
T Consensus 132 ~vwd~~~~~~~~~~~--h~-~~-v~~~~~~~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~---- 194 (319)
T 3frx_A 132 KVWTIKGQCLATLLG--HN-DW-VSQVRVVPNEKADDDSVTIISAGND---------KMVKAWNLNQFQIEADFIG---- 194 (319)
T ss_dssp EEEETTSCEEEEECC--CS-SC-EEEEEECCC------CCEEEEEETT---------SCEEEEETTTTEEEEEECC----
T ss_pred EEEECCCCeEEEEec--cC-Cc-EEEEEEccCCCCCCCccEEEEEeCC---------CEEEEEECCcchhheeecC----
Confidence 677876543333221 11 11 1111111 22355556643 3578888876543322111
Q ss_pred CCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 232 WPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 232 ~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
....-.+++.. ++.+++.||.++. +.++|+.+.+
T Consensus 195 --h~~~v~~~~~sp~g~~l~s~~~dg~----------------i~iwd~~~~~ 229 (319)
T 3frx_A 195 --HNSNINTLTASPDGTLIASAGKDGE----------------IMLWNLAAKK 229 (319)
T ss_dssp --CCSCEEEEEECTTSSEEEEEETTCE----------------EEEEETTTTE
T ss_pred --CCCcEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCCc
Confidence 00111122233 6677888887654 7788877654
|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
Probab=80.52 E-value=14 Score=35.83 Aligned_cols=103 Identities=20% Similarity=0.440 Sum_probs=57.8
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc---EEEecCCCCCCC-cceeEEEEE--CCEEEEEcCccCCCCCccccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPP-RSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~---W~~l~s~~~P~~-R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~ 154 (685)
++++|+|=| +.+|+|+..+-. =+.|.....|.. ..-.++... ++++|+|-|
T Consensus 87 ~~k~yfFkG-----------~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG------------ 143 (218)
T 1gen_A 87 EEKAVFFAG-----------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG------------ 143 (218)
T ss_dssp TTEEEEEET-----------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET------------
T ss_pred CCEEEEEeC-----------CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC------------
Confidence 478999987 357888842100 011222122221 122344443 689999977
Q ss_pred cCeEEEEECCCCcEEE-----cc--cCCCCCCCccceEEEEC--CEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 155 YKDFWMLDLKTNQWEQ-----LN--LKGCPSPRSGHRMVLYK--HKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 155 ~~dv~~yD~~t~~W~~-----~~--~~g~P~~Rsgh~~v~~~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
+..|+||..+++-.. +. -.++| ..-.++..++ +.+|+|-| +..|.||..+..
T Consensus 144 -~~ywr~d~~~~~v~~gyPr~i~~~w~g~p--~~idaAf~~~~~g~~YfFkg-----------~~y~~~~~~~~~ 204 (218)
T 1gen_A 144 -DKFWRYNEVKKKMDPGFPKLIADAWNAIP--DNLDAVVDLQGGGHSYFFKG-----------AYYLKLENQSLK 204 (218)
T ss_dssp -TEEEEEETTTTEECSSCCEEHHHHSSSCC--SSCSEEEECTTTCEEEEEET-----------TEEEEEETTEEE
T ss_pred -CEEEEEECccccccCCCCcchhhccCCCC--CCCCEEEEEcCCCcEEEEEC-----------CEEEEEECCcee
Confidence 568999998764321 11 01222 2334555665 89999977 357788775443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 685 | ||||
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 1e-13 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 1e-11 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 9e-08 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 2e-07 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 1e-06 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 6e-06 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.6 bits (168), Expect = 1e-13
Identities = 41/285 (14%), Positives = 65/285 (22%), Gaps = 47/285 (16%)
Query: 94 GNKTYVYG--------DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
G Y G L Y+ W + + PRS LY GG
Sbjct: 4 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL--ADLQVPRSGLAGCVVGGLLYAVGGRNN 61
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
SP+ D + PR+ + + I GG + +
Sbjct: 62 SPDGNTDSSALDCYNPMTNQWSPCA----PMSVPRNRIGVGVIDGHIYAVGGSHGCIHHN 117
Query: 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR------SGFQFFVYQDEVFLYGGYSKEVS 259
D + R G GF + Y E
Sbjct: 118 SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR 177
Query: 260 TDKNQSEKGIIHS------------------DLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301
+ L S++ E + R+
Sbjct: 178 MITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG 237
Query: 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
+ VH+ R + GG FL+ + + D W +
Sbjct: 238 ITVHQGRIYVLGGYDGHT---------FLDSVECYDPDTDTWSEV 273
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.8 bits (153), Expect = 1e-11
Identities = 32/214 (14%), Positives = 60/214 (28%), Gaps = 31/214 (14%)
Query: 91 FYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150
+ G E + + R LY GG +
Sbjct: 105 YAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG------FD 158
Query: 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYND 210
+ + N+W + +G + + I GG Y
Sbjct: 159 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGG---------YDGQ 207
Query: 211 LYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGII 270
+ ++++ + F + RS V+Q +++ GGY D
Sbjct: 208 DQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLD--------- 258
Query: 271 HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304
+ DP T WS+V ++ R+G + V
Sbjct: 259 --SVECYDPDTDTWSEVTRM---TSGRSGVGVAV 287
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (122), Expect = 9e-08
Identities = 39/315 (12%), Positives = 74/315 (23%), Gaps = 51/315 (16%)
Query: 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVF 249
I GG++ + + L ++ W + PRSG V ++
Sbjct: 5 RLIYTAGGYFR-----QSLSYLEAYNPSNGTWLRLAD-----LQVPRSGLAGCVVGGLLY 54
Query: 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRA 309
GG + + + S + ++ PR + V
Sbjct: 55 AVGGRNNSPDGNTDSSALDCYN----------PMTNQWSPCAPMSVPRNRIGVGVIDGHI 104
Query: 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369
GG V + +
Sbjct: 105 YAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRI---------------------GVG 143
Query: 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGG 429
FD + +AE Y I ++ + + +GG
Sbjct: 144 VAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGG 203
Query: 430 KPYESKKKS-----DMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDD 484
+ + S ++ R + V + +YV GG D LD
Sbjct: 204 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGY----DGHTFLDS 259
Query: 485 LYSLNLSKLDEWKCI 499
+ + D W +
Sbjct: 260 VECYDPDT-DTWSEV 273
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 51.4 bits (121), Expect = 2e-07
Identities = 18/163 (11%), Positives = 44/163 (26%), Gaps = 11/163 (6%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP 123
AP ++ + +K L G Y + + + + N
Sbjct: 227 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY 286
Query: 124 PRSAHQAVSWKNY--LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS 181
+I GG+ E + + + + + N R
Sbjct: 287 FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN--PNSIVRV 344
Query: 182 GHR--MVLYKHKIIVFGGF-----YDTLREVRYYNDLYVFDLD 217
H ++L ++ GG + + + Y+++ +
Sbjct: 345 YHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSN 387
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 20/181 (11%), Positives = 38/181 (20%), Gaps = 21/181 (11%)
Query: 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178
+ P +A + ++ D T +
Sbjct: 15 IDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH 74
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
+ + + IV G D ++ Y+ S P P
Sbjct: 75 DMFCPGISMDGNGQIVVTGGNDA-KKTSLYD----------------SSSDSWIPGPDMQ 117
Query: 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298
G V T G+ + P + W+ + + P A
Sbjct: 118 VARGYQSSATMSDG----RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA 173
Query: 299 G 299
Sbjct: 174 D 174
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 46.7 bits (109), Expect = 6e-06
Identities = 22/287 (7%), Positives = 56/287 (19%), Gaps = 29/287 (10%)
Query: 63 VPAPSPRSNCSLNINPLKETELILYGGEF--YNGNKTYVYGDLYRYDVEKQEWKVISSPN 120
+ P + ++ ++++ G +D +
Sbjct: 15 IDLPIVPAAAAI---EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV 71
Query: 121 SPPPR--SAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178
+ + G + K + D ++ W
Sbjct: 72 TKHDMFCPGISMDGNGQIVVTGG-----------NDAKKTSLYDSSSDSWIPGP--DMQV 118
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
R + G + + V+ W + P
Sbjct: 119 ARGYQSSATMSDGRVFTIGGSW--SGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADK 175
Query: 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298
+ + +L+ + + G + W + + K G
Sbjct: 176 QGLYRSDNHAWLF------GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 229
Query: 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345
+ G ++ D S + L P
Sbjct: 230 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP 276
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 685 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.97 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.91 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.63 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.51 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.24 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.07 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 95.93 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.71 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 95.51 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.35 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 95.32 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 95.27 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.16 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 95.15 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 94.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 94.92 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 94.84 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 94.73 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 94.71 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 94.55 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 94.34 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 94.29 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 94.13 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 93.88 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 93.85 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 93.83 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 93.83 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 93.76 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 93.57 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 93.57 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 93.39 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 93.31 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 92.99 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 92.92 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 92.87 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 92.7 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 92.21 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 92.11 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 91.86 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.64 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.52 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 90.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 90.75 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 89.95 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 88.83 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 88.57 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 88.03 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 87.41 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 87.32 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 86.54 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 85.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 85.11 | |
| d1hxna_ | 210 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 84.12 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 82.48 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 80.67 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-39 Score=333.67 Aligned_cols=277 Identities=20% Similarity=0.300 Sum_probs=240.1
Q ss_pred ccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCe
Q 005655 78 PLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 78 p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
|..++.||||||.. .. .++++++||+.+++|..++++ |.+|++|++++++++||||||....... ...+++
T Consensus 1 ~~~g~~iyv~GG~~--~~---~~~~~~~yd~~t~~W~~~~~~--p~~R~~~~~~~~~~~iyv~GG~~~~~~~--~~~~~~ 71 (288)
T d1zgka1 1 PKVGRLIYTAGGYF--RQ---SLSYLEAYNPSNGTWLRLADL--QVPRSGLAGCVVGGLLYAVGGRNNSPDG--NTDSSA 71 (288)
T ss_dssp CCCCCCEEEECCBS--SS---BCCCEEEEETTTTEEEECCCC--SSCCBSCEEEEETTEEEEECCEEEETTE--EEECCC
T ss_pred CCcCCEEEEECCcC--CC---CCceEEEEECCCCeEEECCCC--CCccceeEEEEECCEEEEEeCcccCCCC--ccccch
Confidence 34478999999952 22 568999999999999999764 6889999999999999999998644332 346789
Q ss_pred EEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcc
Q 005655 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (685)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs 237 (685)
+|+||+.+++|+.+++ +|.+|++|++++++++||++||.... .++++++.||+.+..|...... |.+|+
T Consensus 72 ~~~yd~~~~~w~~~~~--~p~~r~~~~~~~~~~~i~~~gg~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~~r~ 140 (288)
T d1zgka1 72 LDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWHLVAPM-----LTRRI 140 (288)
T ss_dssp EEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEECCEETT----EECCCEEEEETTTTEEEECCCC-----SSCCB
T ss_pred hhhccccccccccccc--ccceecceeccccceeeEEecceecc----cccceeeeeccccCcccccccc-----ccccc
Confidence 9999999999999987 89999999999999999999998653 4689999999999999998877 88999
Q ss_pred ceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceec
Q 005655 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317 (685)
Q Consensus 238 ~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~ 317 (685)
+|+++++.+.+|++||.... ..+.+++.||+.+++|..... .|.++.++++++++++||++||...
T Consensus 141 ~~~~~~~~~~~~~~GG~~~~-----------~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~i~GG~~~ 206 (288)
T d1zgka1 141 GVGVAVLNRLLYAVGGFDGT-----------NRLNSAECYYPERNEWRMITA---MNTIRSGAGVCVLHNCIYAAGGYDG 206 (288)
T ss_dssp SCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCS
T ss_pred cceeeeeeecceEecCcccc-----------cccceEEEeeccccccccccc---cccccccccccceeeeEEEecCccc
Confidence 99999999999999998755 556789999999999998764 4678899999999999999999864
Q ss_pred ccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhh
Q 005655 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEE 397 (685)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (685)
...+++++.||+.+++|..+..
T Consensus 207 ---------~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 228 (288)
T d1zgka1 207 ---------QDQLNSVERYDVETETWTFVAP------------------------------------------------- 228 (288)
T ss_dssp ---------SSBCCCEEEEETTTTEEEECCC-------------------------------------------------
T ss_pred ---------cccccceeeeeecceeeecccC-------------------------------------------------
Confidence 3457899999999999997653
Q ss_pred hhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccC
Q 005655 398 ADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIND 477 (685)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~ 477 (685)
+|.+|++|++++.++.||||||..
T Consensus 229 ----------------------------------------------------~p~~r~~~~~~~~~~~l~v~GG~~---- 252 (288)
T d1zgka1 229 ----------------------------------------------------MKHRRSALGITVHQGRIYVLGGYD---- 252 (288)
T ss_dssp ----------------------------------------------------CSSCCBSCEEEEETTEEEEECCBC----
T ss_pred ----------------------------------------------------ccCcccceEEEEECCEEEEEecCC----
Confidence 689999999999999999999974
Q ss_pred eeeeeecccccccCCCCccEEeccCC
Q 005655 478 QEITLDDLYSLNLSKLDEWKCIIPAS 503 (685)
Q Consensus 478 re~tl~D~y~ldL~kld~w~~~~~~~ 503 (685)
....++++|+||+.+ +.|++|-.++
T Consensus 253 ~~~~~~~v~~yd~~~-~~W~~~~~~p 277 (288)
T d1zgka1 253 GHTFLDSVECYDPDT-DTWSEVTRMT 277 (288)
T ss_dssp SSCBCCEEEEEETTT-TEEEEEEECS
T ss_pred CCeecceEEEEECCC-CEEEECCCCC
Confidence 235789999999999 9999997763
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-36 Score=309.09 Aligned_cols=243 Identities=19% Similarity=0.292 Sum_probs=214.8
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvf 140 (685)
.+.++|.+|.+|+++++ ++.||||||..........++++++||+.+++|..++++ |.+|++|++++++++||++
T Consensus 33 ~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~--p~~r~~~~~~~~~~~i~~~ 107 (288)
T d1zgka1 33 RLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM--SVPRNRIGVGVIDGHIYAV 107 (288)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC--SSCCBTCEEEEETTEEEEE
T ss_pred ECCCCCCccceeEEEEE---CCEEEEEeCcccCCCCccccchhhhcccccccccccccc--cceecceeccccceeeEEe
Confidence 34678999999999999 899999999865444456789999999999999998764 6899999999999999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
||.... ..++++++||+.++.|..... +|.+|.+|+++++++.+|++||.... ..+++++.||+.+++
T Consensus 108 gg~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~~GG~~~~----~~~~~~~~~d~~~~~ 175 (288)
T d1zgka1 108 GGSHGC------IHHNSVERYEPERDEWHLVAP--MLTRRIGVGVAVLNRLLYAVGGFDGT----NRLNSAECYYPERNE 175 (288)
T ss_dssp CCEETT------EECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSS----CBCCCEEEEETTTTE
T ss_pred cceecc------cccceeeeeccccCccccccc--cccccccceeeeeeecceEecCcccc----cccceEEEeeccccc
Confidence 998654 357899999999999999877 78999999999999999999998653 347899999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCccee
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~ 300 (685)
|...... +.++.+++++.+++.||++||.... ..+++++.||+.+.+|+.+.+ .|.+|.+|
T Consensus 176 ~~~~~~~-----~~~~~~~~~~~~~~~i~i~GG~~~~-----------~~~~~~~~~~~~~~~~~~~~~---~p~~r~~~ 236 (288)
T d1zgka1 176 WRMITAM-----NTIRSGAGVCVLHNCIYAAGGYDGQ-----------DQLNSVERYDVETETWTFVAP---MKHRRSAL 236 (288)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEECCC---CSSCCBSC
T ss_pred ccccccc-----ccccccccccceeeeEEEecCcccc-----------ccccceeeeeecceeeecccC---ccCcccce
Confidence 9998877 7889999999999999999998765 567889999999999999875 47899999
Q ss_pred EEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
++++++++||||||.+. ..++++|++||+.+++|+.+..
T Consensus 237 ~~~~~~~~l~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 275 (288)
T d1zgka1 237 GITVHQGRIYVLGGYDG---------HTFLDSVECYDPDTDTWSEVTR 275 (288)
T ss_dssp EEEEETTEEEEECCBCS---------SCBCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCEEEEEecCCC---------CeecceEEEEECCCCEEEECCC
Confidence 99999999999999854 3568899999999999999976
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.97 E-value=1.1e-30 Score=279.28 Aligned_cols=259 Identities=9% Similarity=0.028 Sum_probs=176.3
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCC--CceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEE
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYI 139 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g--~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv 139 (685)
.+.|..|..++++.. +++||||||...+. .....+..+++||+.+++|..++.+..|..+..++++++ ++.||+
T Consensus 15 ~~~p~~~~~~a~~~~---~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v 91 (387)
T d1k3ia3 15 IDLPIVPAAAAIEPT---SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVV 91 (387)
T ss_dssp EECSSCCSEEEEETT---TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEE
T ss_pred CCCCccccEEEEEee---CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEE
Confidence 456666665554444 79999999964321 111234568899999999998877665555555555555 689999
Q ss_pred EcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 140 fGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
+||... +.+++||+.+++|+.++. +|.+|.+|+++++ +++||++||..... .+++++++||+.+
T Consensus 92 ~Gg~~~----------~~~~~yd~~~~~w~~~~~--~~~~r~~~~~~~~~dG~v~v~GG~~~~~---~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 92 TGGNDA----------KKTSLYDSSSDSWIPGPD--MQVARGYQSSATMSDGRVFTIGGSWSGG---VFEKNGEVYSPSS 156 (387)
T ss_dssp ECSSST----------TCEEEEEGGGTEEEECCC--CSSCCSSCEEEECTTSCEEEECCCCCSS---SCCCCEEEEETTT
T ss_pred eecCCC----------cceeEecCccCccccccc--ccccccccceeeecCCceeeeccccccc---cccceeeeecCCC
Confidence 998643 568999999999999887 8999999999988 67999999975533 3688999999999
Q ss_pred CceEEeccCCCC----------------------------------------------------------CCCCCcccee
Q 005655 219 FKWQEIKPRFGS----------------------------------------------------------MWPSPRSGFQ 240 (685)
Q Consensus 219 ~~W~~v~~~~~~----------------------------------------------------------~~P~~Rs~~s 240 (685)
++|+.++..... ..+.++++++
T Consensus 157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (387)
T d1k3ia3 157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA 236 (387)
T ss_dssp TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccE
Confidence 999988654210 0111223333
Q ss_pred EEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceec
Q 005655 241 FFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (685)
Q Consensus 241 ~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~ 317 (685)
++.. +++|||+||..... ...........+++.+++....|..+.. .|.+|.+|+++++ +++|||+||...
T Consensus 237 ~~~~~~~g~v~v~GG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~r~~~~~~~~~dg~i~v~GG~~~ 310 (387)
T d1k3ia3 237 VMYDAVKGKILTFGGSPDYQ---DSDATTNAHIITLGEPGTSPNTVFASNG---LYFARTFHTSVVLPDGSTFITGGQRR 310 (387)
T ss_dssp EEEETTTTEEEEECCBSSSS---SSBCCCCEEEEECCSTTSCCEEEECTTC---CSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred EEeeccCCceEEEEeccCCC---CCcccceeecccccccccCCCceeeccc---cccccccceeeeccCCeEEEECCccc
Confidence 3322 68899999976430 0001111112223333445556665543 5889999999988 789999999864
Q ss_pred ccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
..... .....+.+++||+.+++|+.++.
T Consensus 311 ~~~~~---~~~~~~~ve~Ydp~~~~W~~~~~ 338 (387)
T d1k3ia3 311 GIPFE---DSTPVFTPEIYVPEQDTFYKQNP 338 (387)
T ss_dssp CCTTC---CCSBCCCCEEEEGGGTEEEECCC
T ss_pred CccCC---CCcEeceEEEEECCCCeEEECCC
Confidence 32111 13345679999999999998754
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.91 E-value=1.2e-23 Score=224.16 Aligned_cols=204 Identities=12% Similarity=0.038 Sum_probs=148.8
Q ss_pred cCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEE
Q 005655 108 VEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL 187 (685)
Q Consensus 108 ~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~ 187 (685)
|..++|....++ |..|.+++++..+++||||||.......+....+..+++||+.+++|+.+++...|..+..+++++
T Consensus 6 p~~g~W~~~~~~--p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~ 83 (387)
T d1k3ia3 6 PGLGRWGPTIDL--PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISM 83 (387)
T ss_dssp TTSCEEEEEEEC--SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEE
T ss_pred CCCCccCCcCCC--CccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEE
Confidence 567899987553 566666666666899999999865544333445667899999999999887632344444444444
Q ss_pred E-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCC
Q 005655 188 Y-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQS 265 (685)
Q Consensus 188 ~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~ 265 (685)
. +++||++||.. .+++++||+.+++|+.+..+ |.+|.+|+++++ +++||++||....
T Consensus 84 ~~~g~i~v~Gg~~--------~~~~~~yd~~~~~w~~~~~~-----~~~r~~~~~~~~~dG~v~v~GG~~~~-------- 142 (387)
T d1k3ia3 84 DGNGQIVVTGGND--------AKKTSLYDSSSDSWIPGPDM-----QVARGYQSSATMSDGRVFTIGGSWSG-------- 142 (387)
T ss_dssp CTTSCEEEECSSS--------TTCEEEEEGGGTEEEECCCC-----SSCCSSCEEEECTTSCEEEECCCCCS--------
T ss_pred ecCCcEEEeecCC--------CcceeEecCccCcccccccc-----cccccccceeeecCCceeeecccccc--------
Confidence 3 78999999864 35789999999999998877 889999999888 7899999997654
Q ss_pred CCCceeeeEEEEeCCCceeEEeecCCCCCCCccee-----------EEEEECCeEEEecceecccCCccccccccCCcEE
Q 005655 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF-----------SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (685)
Q Consensus 266 ~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~-----------s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (685)
+..++++++||+.+++|+.+......+.....+ .+...++++|++||. .+.++
T Consensus 143 --~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~--------------~~~~~ 206 (387)
T d1k3ia3 143 --GVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS--------------TAMNW 206 (387)
T ss_dssp --SSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS--------------SEEEE
T ss_pred --ccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc--------------CCcEE
Confidence 467789999999999999987643322211111 111224566666654 45689
Q ss_pred EEECCCCcEEEEEecC
Q 005655 335 GFQLDNHRWYPLELRK 350 (685)
Q Consensus 335 ~yd~~t~~W~~l~~~~ 350 (685)
.|++.+..|..+....
T Consensus 207 ~~~~~~~~~~~~~~~~ 222 (387)
T d1k3ia3 207 YYTSGSGDVKSAGKRQ 222 (387)
T ss_dssp EECSTTCEEEEEEECE
T ss_pred ecCcccCcEeeccccc
Confidence 9999999999887643
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.63 E-value=0.024 Score=56.91 Aligned_cols=148 Identities=12% Similarity=0.122 Sum_probs=79.3
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
+++..| ++.++++|+. + +.|.+||..++++..+..... ....-.+++.. ++.+++.||.+
T Consensus 12 ~~~~s~--dg~~la~~~~--~-------~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~~l~s~s~D------- 72 (371)
T d1k8kc_ 12 CHAWNK--DRTQIAICPN--N-------HEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTD------- 72 (371)
T ss_dssp EEEECT--TSSEEEEECS--S-------SEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEeC--C-------CEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCCEEEEEECC-------
Confidence 345555 6778888873 1 368889998888876543210 01111233333 45556666643
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
..+.+||+.++.|..... ..........+.+ ++..++.|+... .-.+|.++.....|......
T Consensus 73 ----~~i~vWd~~~~~~~~~~~--~~~~~~~v~~i~~~p~~~~l~~~s~d~-------~i~i~~~~~~~~~~~~~~~~-- 137 (371)
T d1k8kc_ 73 ----RNAYVWTLKGRTWKPTLV--ILRINRAARCVRWAPNEKKFAVGSGSR-------VISICYFEQENDWWVCKHIK-- 137 (371)
T ss_dssp ----SCEEEEEEETTEEEEEEE--CCCCSSCEEEEEECTTSSEEEEEETTS-------SEEEEEEETTTTEEEEEEEC--
T ss_pred ----CeEEEEeecccccccccc--cccccccccccccccccccceeecccC-------cceeeeeecccccccccccc--
Confidence 347788888899986654 2222222333334 455566665432 23466666666666554433
Q ss_pred CCCCCCccc-eeEEEe-CCEEEEEecccCC
Q 005655 230 SMWPSPRSG-FQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 230 ~~~P~~Rs~-~s~~~~-~~~Iyv~GG~~~~ 257 (685)
...+.. .++... ++.+++.|+.++.
T Consensus 138 ---~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 138 ---KPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp ---TTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred ---cccccccccccccccccceeccccCcE
Confidence 111111 122223 5667777777654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.51 E-value=0.37 Score=46.74 Aligned_cols=103 Identities=11% Similarity=-0.020 Sum_probs=57.0
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC--CC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC--PS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~--P~ 178 (685)
+.|++||+.+++-+.+..+. +.+..+..-++.|+|... +.+.+||+.+++++.+..... +.
T Consensus 40 ~~I~r~d~~~g~~~~~~~~~----~~~~i~~~~dg~l~va~~-------------~gl~~~d~~tg~~~~l~~~~~~~~~ 102 (295)
T d2ghsa1 40 RELHELHLASGRKTVHALPF----MGSALAKISDSKQLIASD-------------DGLFLRDTATGVLTLHAELESDLPG 102 (295)
T ss_dssp TEEEEEETTTTEEEEEECSS----CEEEEEEEETTEEEEEET-------------TEEEEEETTTCCEEEEECSSTTCTT
T ss_pred CEEEEEECCCCeEEEEECCC----CcEEEEEecCCCEEEEEe-------------CccEEeecccceeeEEeeeecCCCc
Confidence 46899999998766554322 222222233677777532 458899999999988765211 22
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
.|.+...+--++.||+-.-.... ......+|.+..++.+.+.
T Consensus 103 ~~~nd~~vd~~G~iw~~~~~~~~-----~~~~g~l~~~~~g~~~~~~ 144 (295)
T d2ghsa1 103 NRSNDGRMHPSGALWIGTMGRKA-----ETGAGSIYHVAKGKVTKLF 144 (295)
T ss_dssp EEEEEEEECTTSCEEEEEEETTC-----CTTCEEEEEEETTEEEEEE
T ss_pred ccceeeEECCCCCEEEEeccccc-----cccceeEeeecCCcEEEEe
Confidence 34444434346777774332211 1223344444455555443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.07 Score=52.30 Aligned_cols=192 Identities=14% Similarity=0.068 Sum_probs=95.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
+++..| ++.+++.|+. + +.+.+||+...............+. -..++.. ++.+++.|+..
T Consensus 102 ~v~~s~--dg~~l~s~~~--d-------g~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d------- 162 (337)
T d1gxra_ 102 SCKLLP--DGCTLIVGGE--A-------STLSIWDLAAPTPRIKAELTSSAPA-CYALAISPDSKVCFSCCSD------- 162 (337)
T ss_dssp EEEECT--TSSEEEEEES--S-------SEEEEEECCCC--EEEEEEECSSSC-EEEEEECTTSSEEEEEETT-------
T ss_pred EEEEcC--CCCEEEEeec--c-------ccccccccccccccccccccccccc-ccccccccccccccccccc-------
Confidence 455555 5666677763 2 3578889887665533322111111 1222222 35555555532
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEE-ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (685)
..+..|++.++.-..... ..... -.+++. .++..+++|+.. ..+.+||+.+.+-...-..
T Consensus 163 ----~~i~~~~~~~~~~~~~~~--~~~~~-v~~l~~s~~~~~~~~~~~d---------~~v~i~d~~~~~~~~~~~~--- 223 (337)
T d1gxra_ 163 ----GNIAVWDLHNQTLVRQFQ--GHTDG-ASCIDISNDGTKLWTGGLD---------NTVRSWDLREGRQLQQHDF--- 223 (337)
T ss_dssp ----SCEEEEETTTTEEEEEEC--CCSSC-EEEEEECTTSSEEEEEETT---------SEEEEEETTTTEEEEEEEC---
T ss_pred ----cccccccccccccccccc--ccccc-ccccccccccccccccccc---------ccccccccccceeeccccc---
Confidence 347888888776443322 11111 112222 255666677643 4578888877642222111
Q ss_pred CCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCe
Q 005655 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR 308 (685)
Q Consensus 231 ~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~ 308 (685)
+.+ -.+++.. ++.+++.|+.++. +.+||+.+..-..... ..-.-.++++. +++
T Consensus 224 --~~~--i~~l~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~-----~~~~i~~v~~s~~g~ 278 (337)
T d1gxra_ 224 --TSQ--IFSLGYCPTGEWLAVGMESSN----------------VEVLHVNKPDKYQLHL-----HESCVLSLKFAYCGK 278 (337)
T ss_dssp --SSC--EEEEEECTTSSEEEEEETTSC----------------EEEEETTSSCEEEECC-----CSSCEEEEEECTTSS
T ss_pred --ccc--eEEEEEcccccccceeccccc----------------cccccccccccccccc-----cccccceEEECCCCC
Confidence 111 1223333 5556667776654 6778876654433221 11112233333 566
Q ss_pred EEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
.++.||.. +.|.+||+.+.
T Consensus 279 ~l~s~s~D--------------g~i~iwd~~~~ 297 (337)
T d1gxra_ 279 WFVSTGKD--------------NLLNAWRTPYG 297 (337)
T ss_dssp EEEEEETT--------------SEEEEEETTTC
T ss_pred EEEEEeCC--------------CeEEEEECCCC
Confidence 66666643 34888987765
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.07 E-value=0.12 Score=50.43 Aligned_cols=193 Identities=9% Similarity=-0.018 Sum_probs=91.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~ 159 (685)
++.+++.|+. + +.+.+||+.+............... -.+++.. ++.+++.+|.... ..+.
T Consensus 69 ~g~~latg~~--d-------g~i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~s~d~~~l~~~~~~~~---------~~~~ 129 (311)
T d1nr0a1 69 SGYYCASGDV--H-------GNVRIWDTTQTTHILKTTIPVFSGP-VKDISWDSESKRIAAVGEGRE---------RFGH 129 (311)
T ss_dssp TSSEEEEEET--T-------SEEEEEESSSTTCCEEEEEECSSSC-EEEEEECTTSCEEEEEECCSS---------CSEE
T ss_pred CCCeEecccc--C-------ceEeeeeeeccccccccccccccCc-ccccccccccccccccccccc---------cccc
Confidence 4566666662 2 3577888877654321111000111 1222222 3556666653221 2345
Q ss_pred EEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCc
Q 005655 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (685)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (685)
+++..+.+-.. . +......-..+.+ +.++++.|+.+ ..|.+||..+.+-...-.. . ..
T Consensus 130 v~~~~~~~~~~--~--l~~h~~~v~~v~~~~~~~~~l~sgs~d---------~~i~i~d~~~~~~~~~~~~-----~-~~ 190 (311)
T d1nr0a1 130 VFLFDTGTSNG--N--LTGQARAMNSVDFKPSRPFRIISGSDD---------NTVAIFEGPPFKFKSTFGE-----H-TK 190 (311)
T ss_dssp EEETTTCCBCB--C--CCCCSSCEEEEEECSSSSCEEEEEETT---------SCEEEEETTTBEEEEEECC-----C-SS
T ss_pred ccccccccccc--c--ccccccccccccccccceeeecccccc---------ccccccccccccccccccc-----c-cc
Confidence 66666553211 1 1111111122333 34566667643 3578889887654333221 1 11
Q ss_pred cceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcce-----eEEEEE-CCeE
Q 005655 237 SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG-----FSMCVH-KKRA 309 (685)
Q Consensus 237 s~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g-----~s~~~~-~~~i 309 (685)
.-.++... ++.+++.|+..+. +.+||..+..-...-.. ......+ .++++. +++.
T Consensus 191 ~i~~v~~~p~~~~l~~~~~d~~----------------v~~~d~~~~~~~~~~~~--~~~~~~~h~~~V~~~~~s~~~~~ 252 (311)
T d1nr0a1 191 FVHSVRYNPDGSLFASTGGDGT----------------IVLYNGVDGTKTGVFED--DSLKNVAHSGSVFGLTWSPDGTK 252 (311)
T ss_dssp CEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCEEEECBC--TTSSSCSSSSCEEEEEECTTSSE
T ss_pred cccccccCcccccccccccccc----------------ccccccccccccccccc--cccccccccccccccccCCCCCE
Confidence 11223333 6667777777655 67788766543322111 1111111 233333 5677
Q ss_pred EEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
++.||.. +.|.+||+.+++-
T Consensus 253 l~tgs~D--------------g~v~iwd~~t~~~ 272 (311)
T d1nr0a1 253 IASASAD--------------KTIKIWNVATLKV 272 (311)
T ss_dssp EEEEETT--------------SEEEEEETTTTEE
T ss_pred EEEEeCC--------------CeEEEEECCCCcE
Confidence 7777653 3489999988753
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.93 E-value=0.7 Score=43.62 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=35.4
Q ss_pred ceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
.....++.++..+..+...... |.....+.++...+..+++++. +.+.+||+.+.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---------------~~i~v~d~~~~~~~ 273 (337)
T d1pbyb_ 216 AYRTGLLTMDLETGEMAMREVR---IMDVFYFSTAVNPAKTRAFGAY---------------NVLESFDLEKNASI 273 (337)
T ss_dssp GEEEEEEEEETTTCCEEEEEEE---ECSSCEEEEEECTTSSEEEEEE---------------SEEEEEETTTTEEE
T ss_pred ccCccEEEEEcCCCcEEEEEec---CCCcceEEEEecccceEEEEcc---------------ccEEEEECCCCcEE
Confidence 3445688888888776665432 3444455555555555555542 34888998876544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.79 Score=42.95 Aligned_cols=136 Identities=11% Similarity=0.059 Sum_probs=70.9
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCc
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS 181 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs 181 (685)
.+..+|+....-...-... .........++..++.|+.. ..+.+||+.+..-..... .. ..
T Consensus 158 ~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~l~s~~~d-----------g~i~~~d~~~~~~~~~~~--~~--~~ 218 (342)
T d2ovrb2 158 MVKVWDPETETCLHTLQGH----TNRVYSLQFDGIHVVSGSLD-----------TSIRVWDVETGNCIHTLT--GH--QS 218 (342)
T ss_dssp CEEEEEGGGTEEEEEECCC----SSCEEEEEECSSEEEEEETT-----------SCEEEEETTTCCEEEEEC--CC--CS
T ss_pred eEEEeecccceeeEEEcCc----ccccccccCCCCEEEEEeCC-----------CeEEEeecccceeeeEec--cc--cc
Confidence 4556666655433221111 11223344466666777653 347788887766433222 11 11
Q ss_pred cceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcc
Q 005655 182 GHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTD 261 (685)
Q Consensus 182 gh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~ 261 (685)
.-.++.+.+.+++.|+.+ ..+.+||+.+..-...-... .........+..++.+++.||.++.
T Consensus 219 ~v~~~~~~~~~l~s~s~d---------~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~s~Dg~---- 281 (342)
T d2ovrb2 219 LTSGMELKDNILVSGNAD---------STVKIWDIKTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGT---- 281 (342)
T ss_dssp CEEEEEEETTEEEEEETT---------SCEEEEETTTCCEEEEECST----TSCSSCEEEEEECSSEEEEEETTSE----
T ss_pred ceeEEecCCCEEEEEcCC---------CEEEEEeccccccccccccc----ceeeeceeecccCCCeeEEEcCCCE----
Confidence 122334445556666643 45888998776544332221 1222233334446667788887654
Q ss_pred cCCCCCCceeeeEEEEeCCCceeE
Q 005655 262 KNQSEKGIIHSDLWSLDPRTWEWS 285 (685)
Q Consensus 262 ~~~~~~~~~~~dv~~yd~~t~~W~ 285 (685)
+.+||+.+.+..
T Consensus 282 ------------i~iwd~~tg~~i 293 (342)
T d2ovrb2 282 ------------VKLWDLKTGEFI 293 (342)
T ss_dssp ------------EEEEETTTCCEE
T ss_pred ------------EEEEECCCCCEE
Confidence 778898876543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.51 E-value=0.17 Score=48.96 Aligned_cols=160 Identities=17% Similarity=0.156 Sum_probs=88.3
Q ss_pred EeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCcccc
Q 005655 76 INPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFH 153 (685)
Q Consensus 76 ~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~ 153 (685)
+.|. +++++.+++. ..+|+||...+...+++. ..+. ..+.+ +++.++++|....
T Consensus 10 fSP~-dG~~~a~~~~----------g~v~v~d~~~~~~~~~~~----~~~v--~~~~~spDg~~l~~~~~~~g------- 65 (360)
T d1k32a3 10 FSPL-DGDLIAFVSR----------GQAFIQDVSGTYVLKVPE----PLRI--RYVRRGGDTKVAFIHGTREG------- 65 (360)
T ss_dssp EEEC-GGGCEEEEET----------TEEEEECTTSSBEEECSC----CSCE--EEEEECSSSEEEEEEEETTE-------
T ss_pred ccCC-CCCEEEEEEC----------CeEEEEECCCCcEEEccC----CCCE--EEEEECCCCCEEEEEEcCCC-------
Confidence 3443 4666666542 368999999998888743 2232 23333 5766666554221
Q ss_pred ccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 154 ~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..++++|..++.-..+.. ..... .+++.. ++..+++++. ...++.++..+.....+...
T Consensus 66 --~~v~v~d~~~~~~~~~~~---~~~~v-~~~~~spdg~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~----- 125 (360)
T d1k32a3 66 --DFLGIYDYRTGKAEKFEE---NLGNV-FAMGVDRNGKFAVVAND---------RFEIMTVDLETGKPTVIERS----- 125 (360)
T ss_dssp --EEEEEEETTTCCEEECCC---CCCSE-EEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEEC-----
T ss_pred --CEEEEEECCCCcEEEeeC---CCceE-Eeeeecccccccceecc---------ccccccccccccceeeeeec-----
Confidence 358899999988877654 11222 222222 5556666654 24688899988776655433
Q ss_pred CCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEE
Q 005655 233 PSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (685)
Q Consensus 233 P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (685)
+.. ....++.. ++..+++++.... ....+.....++++++.+..=..
T Consensus 126 ~~~-~~~~~~~spdg~~la~~~~~~~------~~~~~~~~~~~~v~d~~~~~~~~ 173 (360)
T d1k32a3 126 REA-MITDFTISDNSRFIAYGFPLKH------GETDGYVMQAIHVYDMEGRKIFA 173 (360)
T ss_dssp SSS-CCCCEEECTTSCEEEEEEEECS------STTCSCCEEEEEEEETTTTEEEE
T ss_pred ccc-cccchhhccceeeeeeeccccc------cceeeccccceeeeccccCceee
Confidence 111 11122222 5566666554332 01112334557888887765333
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.35 E-value=0.61 Score=45.94 Aligned_cols=116 Identities=13% Similarity=0.164 Sum_probs=60.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++.+.| ++.+++.||. + ..+.+||+.++.|....... ...+.-.++... ++..++.|+....
T Consensus 55 ~~l~fsp--~~~~l~s~s~--D-------~~i~vWd~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~l~~~s~d~~---- 118 (371)
T d1k8kc_ 55 TGVDWAP--DSNRIVTCGT--D-------RNAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEKKFAVGSGSRV---- 118 (371)
T ss_dssp EEEEEET--TTTEEEEEET--T-------SCEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSSEEEEEETTSS----
T ss_pred EEEEECC--CCCEEEEEEC--C-------CeEEEEeecccccccccccc-cccccccccccccccccceeecccCc----
Confidence 3455566 4556666662 2 25888999999998554321 112222333333 4555556653221
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
-.+|.++.....|...... ..-+..-.++.+ ++.+++.|+.++ .+.+||+...
T Consensus 119 -----i~i~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~l~s~s~D~---------~v~v~~~~~~ 173 (371)
T d1k8kc_ 119 -----ISICYFEQENDWWVCKHIK--KPIRSTVLSLDWHPNSVLLAAGSCDF---------KCRIFSAYIK 173 (371)
T ss_dssp -----EEEEEEETTTTEEEEEEEC--TTCCSCEEEEEECTTSSEEEEEETTS---------CEEEEECCCT
T ss_pred -----ceeeeeecccccccccccc--cccccccccccccccccceeccccCc---------EEEEEeeccC
Confidence 3467777766666544331 112222223333 456677777532 4566666543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.32 E-value=0.52 Score=45.99 Aligned_cols=151 Identities=9% Similarity=0.025 Sum_probs=73.3
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEE-ECCEEEEEccccCCCCceeeeceEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~-~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
++.+++.|+.. ..+.++|..+........ ....... ++.. ..+..++.|+. ...+.
T Consensus 132 ~~~~l~s~~~d-----------g~v~i~~~~~~~~~~~~~--~h~~~v~-~~~~~~~~~~~~~~~~---------~~~i~ 188 (388)
T d1erja_ 132 DGKFLATGAED-----------RLIRIWDIENRKIVMILQ--GHEQDIY-SLDYFPSGDKLVSGSG---------DRTVR 188 (388)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSSCEE-EEEECTTSSEEEEEET---------TSEEE
T ss_pred CCCcceecccc-----------cccccccccccccccccc--ccccccc-cccccccccccccccc---------ceeee
Confidence 45667777753 347788888877655432 1111111 1122 24445555553 24577
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCC
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~ 292 (685)
+||..+..-...... ........+...++.+++.|+..+. +.+|+..+...........
T Consensus 189 ~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~----------------i~i~~~~~~~~~~~~~~~~ 247 (388)
T d1erja_ 189 IWDLRTGQCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLDRA----------------VRVWDSETGFLVERLDSEN 247 (388)
T ss_dssp EEETTTTEEEEEEEC-----SSCEEEEEECSTTCCEEEEEETTSC----------------EEEEETTTCCEEEEEC---
T ss_pred eeecccccccccccc-----ccccccccccCCCCCeEEEEcCCCe----------------EEEeecccCccceeecccc
Confidence 888877654444332 1111111111226677777877654 7788877665444322111
Q ss_pred -CCCC-cce-eEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 293 -PPGP-RAG-FSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 293 -~P~~-R~g-~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
.... ... .++++. ++..++.|+.. +.|.+||+.+..
T Consensus 248 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d--------------~~i~iwd~~~~~ 287 (388)
T d1erja_ 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLD--------------RSVKLWNLQNAN 287 (388)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETT--------------SEEEEEEC----
T ss_pred ccccCCCCCEEEEEECCCCCEEEEEECC--------------CcEEEEeccCCc
Confidence 1111 111 233333 56666666643 347888876543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.27 E-value=0.31 Score=47.21 Aligned_cols=177 Identities=10% Similarity=-0.048 Sum_probs=85.1
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.+++|++.+..=..+-... ...-.++.+ ++.+++.|+.. ..+.+||+.+..............
T Consensus 39 ~v~i~~~~~~~~~~~~~~H----~~~v~~~~~sp~g~~latg~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~ 103 (311)
T d1nr0a1 39 SVYTVPVGSLTDTEIYTEH----SHQTTVAKTSPSGYYCASGDVH-----------GNVRIWDTTQTTHILKTTIPVFSG 103 (311)
T ss_dssp EEEEEETTCSSCCEEECCC----SSCEEEEEECTTSSEEEEEETT-----------SEEEEEESSSTTCCEEEEEECSSS
T ss_pred EEEEEECCCCceeEEEcCC----CCCEEEEEEeCCCCeEeccccC-----------ceEeeeeeeccccccccccccccC
Confidence 5788898765332221111 112233333 56677778753 357788888776432211001111
Q ss_pred CccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEeccc
Q 005655 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYS 255 (685)
Q Consensus 180 Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~ 255 (685)
.-.++.+ ++.+++.+|... ...+.+++..+.+-. ...... ..+ -.+++.. +..+++.|+..
T Consensus 104 --~v~~v~~s~d~~~l~~~~~~~-------~~~~~v~~~~~~~~~--~~l~~h--~~~--v~~v~~~~~~~~~l~sgs~d 168 (311)
T d1nr0a1 104 --PVKDISWDSESKRIAAVGEGR-------ERFGHVFLFDTGTSN--GNLTGQ--ARA--MNSVDFKPSRPFRIISGSDD 168 (311)
T ss_dssp --CEEEEEECTTSCEEEEEECCS-------SCSEEEEETTTCCBC--BCCCCC--SSC--EEEEEECSSSSCEEEEEETT
T ss_pred --ccccccccccccccccccccc-------ccccccccccccccc--cccccc--ccc--cccccccccceeeecccccc
Confidence 1122333 455666665322 123456666554321 111000 011 1122222 34467778776
Q ss_pred CCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEE
Q 005655 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (685)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (685)
+. +.+||..+..-...... ....-.+++.. ++.+++.|+.. +.+.
T Consensus 169 ~~----------------i~i~d~~~~~~~~~~~~----~~~~i~~v~~~p~~~~l~~~~~d--------------~~v~ 214 (311)
T d1nr0a1 169 NT----------------VAIFEGPPFKFKSTFGE----HTKFVHSVRYNPDGSLFASTGGD--------------GTIV 214 (311)
T ss_dssp SC----------------EEEEETTTBEEEEEECC----CSSCEEEEEECTTSSEEEEEETT--------------SCEE
T ss_pred cc----------------ccccccccccccccccc----ccccccccccCcccccccccccc--------------cccc
Confidence 54 77888887654443321 11112233333 56677777643 3488
Q ss_pred EEECCCCc
Q 005655 335 GFQLDNHR 342 (685)
Q Consensus 335 ~yd~~t~~ 342 (685)
+||+.++.
T Consensus 215 ~~d~~~~~ 222 (311)
T d1nr0a1 215 LYNGVDGT 222 (311)
T ss_dssp EEETTTCC
T ss_pred cccccccc
Confidence 89987654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.16 E-value=1.7 Score=46.07 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=72.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCC------CCCCcceeEEEEECCEEEEEcCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN------SPPPRSAHQAVSWKNYLYIFGGEF 144 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~------~P~~R~~ha~v~~~~~iyvfGG~~ 144 (685)
+-++. ++.|||..+ .+.||++|..+. .|+.-+... ..........+..++.||+...
T Consensus 61 tPiv~---~g~vyv~t~----------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 125 (560)
T d1kv9a2 61 TPLFH---DGVIYTSMS----------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-- 125 (560)
T ss_dssp CCEEE---TTEEEEEEG----------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT--
T ss_pred CCEEE---CCEEEEECC----------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC--
Confidence 33455 789988654 257999999988 488532211 0111122345555777776543
Q ss_pred CCCCCccccccCeEEEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--
Q 005655 145 TSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-- 220 (685)
Q Consensus 145 ~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-- 220 (685)
-..++.+|..|++ |........+.......-+++++.+|+-+..... .....|..||..|.+
T Consensus 126 ----------~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~----~~~G~v~a~D~~TG~~~ 191 (560)
T d1kv9a2 126 ----------DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY----GVRGFVSAYDADTGKLA 191 (560)
T ss_dssp ----------TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEE
T ss_pred ----------CCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceec----cccceEEEEECCCceEE
Confidence 1458899988874 7664331112222333446678877764332221 123578999998864
Q ss_pred eEEeccC
Q 005655 221 WQEIKPR 227 (685)
Q Consensus 221 W~~v~~~ 227 (685)
|+.-...
T Consensus 192 W~~~t~~ 198 (560)
T d1kv9a2 192 WRFYTVP 198 (560)
T ss_dssp EEEESSC
T ss_pred eeeeecc
Confidence 7765544
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.15 E-value=0.32 Score=47.66 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=60.3
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
+++..| ++.+++.|+. + +.+.+||....+........ . ..-.+++.. .+..++.|+.
T Consensus 126 ~l~~s~--~~~~l~s~~~--d-------g~v~i~~~~~~~~~~~~~~h--~-~~v~~~~~~~~~~~~~~~~~-------- 183 (388)
T d1erja_ 126 SVCFSP--DGKFLATGAE--D-------RLIRIWDIENRKIVMILQGH--E-QDIYSLDYFPSGDKLVSGSG-------- 183 (388)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC--S-SCEEEEEECTTSSEEEEEET--------
T ss_pred EEEECC--CCCcceeccc--c-------cccccccccccccccccccc--c-cccccccccccccccccccc--------
Confidence 345555 5677777773 2 25788898888766543321 1 111122222 3445555543
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
...+.++|..+..-..... .. .....++.. ++.+++.|+.+ ..+.+||..+......
T Consensus 184 ---~~~i~~~d~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~~~d---------~~i~i~~~~~~~~~~~ 242 (388)
T d1erja_ 184 ---DRTVRIWDLRTGQCSLTLS--IE--DGVTTVAVSPGDGKYIAAGSLD---------RAVRVWDSETGFLVER 242 (388)
T ss_dssp ---TSEEEEEETTTTEEEEEEE--CS--SCEEEEEECSTTCCEEEEEETT---------SCEEEEETTTCCEEEE
T ss_pred ---ceeeeeeeccccccccccc--cc--cccccccccCCCCCeEEEEcCC---------CeEEEeecccCcccee
Confidence 2457788887765544332 11 111222222 45667777643 3578888887665443
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.22 Score=45.47 Aligned_cols=152 Identities=14% Similarity=0.211 Sum_probs=81.7
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEccc----CCCCCCCccceEEEE--CCEEEEEccccCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL----KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~----~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~ 202 (685)
|++.+++.+|+|=| .-+|+++.....+..... .++|.. .. +++.. ++.+|+|-|
T Consensus 13 Av~~~~g~~y~Fkg-------------~~~wr~~~~~~~~~p~~i~~~w~~lp~~-ID-AAf~~~~~~~~yffkg----- 72 (192)
T d1pexa_ 13 AITSLRGETMIFKD-------------RFFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDLIFIFRG----- 72 (192)
T ss_dssp EEEEETTEEEEEET-------------TEEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTEEEEEET-----
T ss_pred EEEEcCCeEEEEEC-------------CEEEEEcCCCCCCcccchhhhCcCCCCc-cc-ceEEEcCCCEEEEEcC-----
Confidence 66677999999977 346777765544442221 123432 22 23333 678999877
Q ss_pred CceeeeceEEEEEcCCCceE---EeccCCCCCCCCCccceeEEEe---CCEEEEEecccCCCCcccCCCCCCceeeeEEE
Q 005655 203 REVRYYNDLYVFDLDQFKWQ---EIKPRFGSMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (685)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~W~---~v~~~~~~~~P~~Rs~~s~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (685)
+.+|+|+..+..+- .+... .+|.+-.+-.++.. ++.+|+|-|- ..|+
T Consensus 73 ------~~~w~y~~~~~~~gyPk~i~~~---~~~~~~~~idaA~~~~~~~~~y~Fkg~------------------~y~~ 125 (192)
T d1pexa_ 73 ------RKFWALNGYDILEGYPKKISEL---GLPKEVKKISAAVHFEDTGKTLLFSGN------------------QVWR 125 (192)
T ss_dssp ------TEEEEESTTCCCTTCSEESTTT---TCCTTCCCCCEEEECTTTSEEEEEETT------------------EEEE
T ss_pred ------CEEEEEcCCcccCCCCeEeeee---ecCCCCCCccEEEEECCCCEEEEEeCC------------------EEEE
Confidence 35688875443321 12111 11222222222222 6899999663 2688
Q ss_pred EeCCCceeEE-----eec-CCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 277 LDPRTWEWSK-----VKK-IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 277 yd~~t~~W~~-----~~~-~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
||..+..=.. +.. -+..| .+.. ++...++.+|+|=|. ..|.||..+++=..
T Consensus 126 y~~~~~~~~~~~pk~I~~~w~gvp-~~vd-Aa~~~~g~~YfF~g~----------------~y~r~~~~~~~v~~ 182 (192)
T d1pexa_ 126 YDDTNHIMDKDYPRLIEEDFPGIG-DKVD-AVYEKNGYIYFFNGP----------------IQFEYSIWSNRIVR 182 (192)
T ss_dssp EETTTTEECSSCCCBHHHHSTTSC-SCCS-EEEEETTEEEEEETT----------------EEEEEETTTTEEEE
T ss_pred EcCccccccCCCcEEHhhcCCCCC-CCce-EEEEeCCEEEEEECC----------------EEEEEeCCcCeEcc
Confidence 8876543211 110 00112 1222 334569999999764 37889988766443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.46 Score=46.06 Aligned_cols=148 Identities=14% Similarity=0.078 Sum_probs=74.0
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (685)
++.+++.|+.. ..+.+||+.......... ++........+.+ ++.+++.|+.. ..+
T Consensus 108 dg~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d---------~~i 165 (337)
T d1gxra_ 108 DGCTLIVGGEA-----------STLSIWDLAAPTPRIKAE--LTSSAPACYALAISPDSKVCFSCCSD---------GNI 165 (337)
T ss_dssp TSSEEEEEESS-----------SEEEEEECCCC--EEEEE--EECSSSCEEEEEECTTSSEEEEEETT---------SCE
T ss_pred CCCEEEEeecc-----------cccccccccccccccccc--cccccccccccccccccccccccccc---------ccc
Confidence 45666777653 357788887766544332 1111111122222 45555555532 357
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecC
Q 005655 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (685)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~ 290 (685)
.+|++.+.+-...... .. ..-.+++.. ++..+++|+..+. +.+||+.+.+-......
T Consensus 166 ~~~~~~~~~~~~~~~~-----~~-~~v~~l~~s~~~~~~~~~~~d~~----------------v~i~d~~~~~~~~~~~~ 223 (337)
T d1gxra_ 166 AVWDLHNQTLVRQFQG-----HT-DGASCIDISNDGTKLWTGGLDNT----------------VRSWDLREGRQLQQHDF 223 (337)
T ss_dssp EEEETTTTEEEEEECC-----CS-SCEEEEEECTTSSEEEEEETTSE----------------EEEEETTTTEEEEEEEC
T ss_pred cccccccccccccccc-----cc-ccccccccccccccccccccccc----------------ccccccccceeeccccc
Confidence 8888887654433322 11 111222222 5566777776544 67788776542222111
Q ss_pred CCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 291 GMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 291 g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
...-.++++. ++..++.|+.. ..+.+||+.+..-.
T Consensus 224 -----~~~i~~l~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~~~ 259 (337)
T d1gxra_ 224 -----TSQIFSLGYCPTGEWLAVGMES--------------SNVEVLHVNKPDKY 259 (337)
T ss_dssp -----SSCEEEEEECTTSSEEEEEETT--------------SCEEEEETTSSCEE
T ss_pred -----ccceEEEEEcccccccceeccc--------------cccccccccccccc
Confidence 1112334443 55666666543 34888888776543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.84 E-value=1.7 Score=41.06 Aligned_cols=186 Identities=8% Similarity=0.045 Sum_probs=98.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCC--CcceeEEEEEC--CEEEEEcCccCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP--PRSAHQAVSWK--NYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~--~R~~ha~v~~~--~~iyvfGG~~~s~ 147 (685)
+.+++.| ++.|||.-.. .+.|.+||+..+--+.+.....+. ....+..+... +.+++..-.
T Consensus 26 ~gvavd~--dg~i~VaD~~---------n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---- 90 (279)
T d1q7fa_ 26 SGVAVNA--QNDIIVADTN---------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS---- 90 (279)
T ss_dssp EEEEECT--TCCEEEEEGG---------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----
T ss_pred cEEEEcC--CCCEEEEECC---------CCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC----
Confidence 4566665 6789998541 246888997754222333221121 12233344442 333332211
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
....+..++.....+..+... ....-+.+++. ++.+|+.... ...+++|++....-..+..
T Consensus 91 ------~~~~i~~~~~~g~~~~~~~~~---~~~~p~~~avd~~G~i~v~~~~---------~~~~~~~~~~g~~~~~~g~ 152 (279)
T d1q7fa_ 91 ------PTHQIQIYNQYGQFVRKFGAT---ILQHPRGVTVDNKGRIIVVECK---------VMRVIIFDQNGNVLHKFGC 152 (279)
T ss_dssp ------GGCEEEEECTTSCEEEEECTT---TCSCEEEEEECTTSCEEEEETT---------TTEEEEECTTSCEEEEEEC
T ss_pred ------CccccccccccccceeecCCC---cccccceeccccCCcEEEEeec---------cceeeEeccCCceeecccc
Confidence 124678888877767666442 22233344443 5678877542 3467788877654444433
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE
Q 005655 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 227 ~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
. .....-+.+++. ++.||+....... +++||+.......+...+.... -.++++-
T Consensus 153 ~-----~~~~~~~~i~~d~~g~i~v~d~~~~~----------------V~~~d~~G~~~~~~g~~g~~~~---P~giavD 208 (279)
T d1q7fa_ 153 S-----KHLEFPNGVVVNDKQEIFISDNRAHC----------------VKVFNYEGQYLRQIGGEGITNY---PIGVGIN 208 (279)
T ss_dssp T-----TTCSSEEEEEECSSSEEEEEEGGGTE----------------EEEEETTCCEEEEESCTTTSCS---EEEEEEC
T ss_pred c-----ccccccceeeeccceeEEeeeccccc----------------eeeeecCCceeeeecccccccC---Ccccccc
Confidence 2 222223333333 6789988765543 7899988776666643332221 2344443
Q ss_pred -CCeEEEecc
Q 005655 306 -KKRALLFGG 314 (685)
Q Consensus 306 -~~~iyvfGG 314 (685)
.+.|||...
T Consensus 209 ~~G~i~Vad~ 218 (279)
T d1q7fa_ 209 SNGEILIADN 218 (279)
T ss_dssp TTCCEEEEEC
T ss_pred cCCeEEEEEC
Confidence 678888743
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=94.73 E-value=2 Score=41.50 Aligned_cols=134 Identities=10% Similarity=0.100 Sum_probs=68.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCc--ceeEEEEE--CCEEEEEcCccCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR--SAHQAVSW--KNYLYIFGGEFTSPN 148 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R--~~ha~v~~--~~~iyvfGG~~~s~~ 148 (685)
+.++.| ++.||+........ ....+.+++||+.++.+..+..+. +..- .-+.+++. ++.|||..+.
T Consensus 22 Gpa~d~--dG~ly~~~~~~~~~--~~~~g~I~r~d~~~~~~~~~~~~~-~~~~~g~P~Gl~~~~dg~~l~vad~~----- 91 (314)
T d1pjxa_ 22 GPVFDK--NGDFYIVAPEVEVN--GKPAGEILRIDLKTGKKTVICKPE-VNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp EEEECT--TSCEEEEETTCEET--TEECCEEEEECTTTCCEEEEECCE-ETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred EeEEeC--CCCEEEEECccccc--cccCCEEEEEECCCCcEEEEECCc-cccCCCcceeEEEeCCCCEEEEEECC-----
Confidence 345665 67888875421111 123457999999999888665432 1111 12344444 3578886542
Q ss_pred CccccccCeEEEEECCCCcEEEcccCCCCC-CCccceEEEE-CCEEEEEc--cccCCC----CceeeeceEEEEEcCCCc
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVLY-KHKIIVFG--GFYDTL----REVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-~Rsgh~~v~~-~~~lyv~G--G~~~~~----~~~~~~~dv~~yD~~t~~ 220 (685)
+.+.++++.+.....+....... .+.-+-.++- ++.||+-. |..... ........||++++.. +
T Consensus 92 -------~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~ 163 (314)
T d1pjxa_ 92 -------LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q 163 (314)
T ss_dssp -------TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C
T ss_pred -------CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-c
Confidence 45889999877655443311111 1111223332 57888752 211100 0011234688888754 3
Q ss_pred eEEe
Q 005655 221 WQEI 224 (685)
Q Consensus 221 W~~v 224 (685)
+..+
T Consensus 164 ~~~~ 167 (314)
T d1pjxa_ 164 MIQV 167 (314)
T ss_dssp EEEE
T ss_pred eeEe
Confidence 4444
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=94.71 E-value=1.2 Score=41.16 Aligned_cols=193 Identities=13% Similarity=0.059 Sum_probs=96.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEE-ecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPN 148 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~-l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~ 148 (685)
+++++.|. +..||+.++. -+.+.+||+.+++-.. ++. ...-+.++.. + ..+|+.+..
T Consensus 35 ~~va~spd-G~~l~v~~~~---------~~~i~v~d~~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----- 94 (301)
T d1l0qa2 35 MGAVISPD-GTKVYVANAH---------SNDVSIIDTATNNVIATVPA-----GSSPQGVAVSPDGKQVYVTNMA----- 94 (301)
T ss_dssp EEEEECTT-SSEEEEEEGG---------GTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETT-----
T ss_pred eEEEEeCC-CCEEEEEECC---------CCEEEEEECCCCceeeeeec-----cccccccccccccccccccccc-----
Confidence 56777773 3567776652 2468999999886543 222 1223444444 2 455554432
Q ss_pred CccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
-..+.+++..+++....-. .....+.++.. ++ .+++.+.. ...+..++..+........
T Consensus 95 ------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~dg~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 155 (301)
T d1l0qa2 95 ------SSTLSVIDTTSNTVAGTVK----TGKSPLGLALSPDGKKLYVTNNG---------DKTVSVINTVTKAVINTVS 155 (301)
T ss_dssp ------TTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEE
T ss_pred ------cceeeecccccceeeeecc----ccccceEEEeecCCCeeeeeecc---------ccceeeeeccccceeeecc
Confidence 1356788888876544322 11222233332 34 44444332 2456778887776554433
Q ss_pred CCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE
Q 005655 227 RFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (685)
Q Consensus 227 ~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~ 304 (685)
. ...-..++.. +..+|+.+.... .+..++............+. .-.++++
T Consensus 156 ~-------~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 207 (301)
T d1l0qa2 156 V-------GRSPKGIAVTPDGTKVYVANFDSM----------------SISVIDTVTNSVIDTVKVEA-----APSGIAV 207 (301)
T ss_dssp C-------CSSEEEEEECTTSSEEEEEETTTT----------------EEEEEETTTTEEEEEEECSS-----EEEEEEE
T ss_pred c-------CCCceEEEeeccccceeeeccccc----------------ccccccccceeeeecccccC-----Ccceeec
Confidence 2 1111222233 455555543322 24556666655555433211 1223333
Q ss_pred E--CCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 305 H--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 305 ~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
. +..+|+.+... ..+.|++||+.+.+-
T Consensus 208 ~~~g~~~~v~~~~~------------~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 208 NPEGTKAYVTNVDK------------YFNTVSMIDTGTNKI 236 (301)
T ss_dssp CTTSSEEEEEEECS------------SCCEEEEEETTTTEE
T ss_pred cccccccccccccc------------eeeeeeeeecCCCeE
Confidence 3 44555543221 145699999987653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.55 E-value=2 Score=41.13 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=40.1
Q ss_pred CEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCc
Q 005655 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGI 269 (685)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (685)
+.+++.||.+ ..|.+||+.+.+....-.. ...+....-++....++..++.|+.++.
T Consensus 218 ~~~l~s~~~d---------~~i~iwd~~~~~~~~~l~~--~~~~v~~~~~s~~~~dg~~l~s~s~D~~------------ 274 (325)
T d1pgua1 218 GEFVITVGSD---------RKISCFDGKSGEFLKYIED--DQEPVQGGIFALSWLDSQKFATVGADAT------------ 274 (325)
T ss_dssp CCEEEEEETT---------CCEEEEETTTCCEEEECCB--TTBCCCSCEEEEEESSSSEEEEEETTSE------------
T ss_pred ceeccccccc---------cceeeeeeccccccccccc--cccccccceeeeeccCCCEEEEEeCCCe------------
Confidence 5677777753 3588899887764332111 1112222223333346777888887654
Q ss_pred eeeeEEEEeCCCceeEE
Q 005655 270 IHSDLWSLDPRTWEWSK 286 (685)
Q Consensus 270 ~~~dv~~yd~~t~~W~~ 286 (685)
+.+||+.+.+-..
T Consensus 275 ----i~iwd~~~~~~~~ 287 (325)
T d1pgua1 275 ----IRVWDVTTSKCVQ 287 (325)
T ss_dssp ----EEEEETTTTEEEE
T ss_pred ----EEEEECCCCCEEE
Confidence 6778888776443
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.34 E-value=0.62 Score=42.49 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=81.2
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE--EecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK--VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~--~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~ 148 (685)
+++.. +++||+|-|. .+|+++....... .+...-+..|..--++... ++++|+|-|
T Consensus 16 Av~~~---~G~~y~Fkg~-----------~~wr~~~~~~~~~p~~i~~~w~glp~~IDAAf~~~~~~~~yfFkG------ 75 (195)
T d1su3a2 16 AITTI---RGEVMFFKDR-----------FYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKG------ 75 (195)
T ss_dssp EEEEE---TTEEEEEETT-----------EEEECCTTSSSCEEEEGGGTCTTSCSSCCEEEEEGGGTEEEEEET------
T ss_pred EEEEc---CCeEEEEeCC-----------EEEEeeCCCCccCccchHhhCcCCCCcccceEEecCCcEEEEECC------
Confidence 34444 6899999884 2344444443332 1111111112222344434 589999988
Q ss_pred CccccccCeEEEEECCCCcE---EEcc-cCCCCCCCccce-EEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 149 QERFHHYKDFWMLDLKTNQW---EQLN-LKGCPSPRSGHR-MVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W---~~~~-~~g~P~~Rsgh~-~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
+.+|+|+..+..+ ..+. .-|+|....+-- +..+ ++++|+|-| +..|+||..++.-
T Consensus 76 -------~~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG-----------~~y~ry~~~~~~v 137 (195)
T d1su3a2 76 -------NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-----------NKYWRYDEYKRSM 137 (195)
T ss_dssp -------TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEE
T ss_pred -------cEEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeC-----------CEEEEEeccCccc
Confidence 5688998543211 1221 112333322222 2333 579999988 3579999877531
Q ss_pred E-----EeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 222 Q-----EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 222 ~-----~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
. .|...-. .+|.. .. ++...++.+|+|-|. ..|+||+.+.+-..+
T Consensus 138 d~gyPk~I~~~w~-Gvp~~-iD-AAf~~~g~~YfFkg~------------------~y~r~~~~~~~v~~~ 187 (195)
T d1su3a2 138 DPGYPKMIAHDFP-GIGHK-VD-AVFMKDGFFYFFHGT------------------RQYKFDPKTKRILTL 187 (195)
T ss_dssp CSSCSEEHHHHST-TSCSC-CS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEEE
T ss_pred cCCcccccccccC-CCCCC-cc-EEEEECCeEEEEECC------------------EEEEEeCCcCEEEec
Confidence 1 1111001 12322 22 333458999999764 278898877665444
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.29 E-value=1.7 Score=40.66 Aligned_cols=162 Identities=12% Similarity=0.053 Sum_probs=81.0
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.+..||..+.+........ . ....+.+.. .+..++.|+.. ..+.+||..++.....-. +..
T Consensus 182 ~i~~~d~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~-~h~--- 243 (355)
T d1nexb2 182 TLIVWDVAQMKCLYILSGH--T-DRIYSTIYDHERKRCISASMD-----------TTIRIWDLENGELMYTLQ-GHT--- 243 (355)
T ss_dssp CEEEEETTTTEEEEEECCC--S-SCEEEEEEETTTTEEEEEETT-----------SCEEEEETTTCCEEEEEC-CCS---
T ss_pred eeeeeecccccceeeeecc--c-cccccccccccceeeeccccc-----------ceEEeeeccccccccccc-ccc---
Confidence 5778898887665443322 1 222233333 45555666542 347788888776543221 111
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCc
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~ 260 (685)
..-.++.+.+.+++.|+.+ ..|.+||+.+..-...... .......+...++.+++. |..+.
T Consensus 244 ~~v~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~-g~d~~--- 304 (355)
T d1nexb2 244 ALVGLLRLSDKFLVSAAAD---------GSIRGWDANDYSRKFSYHH------TNLSAITTFYVSDNILVS-GSENQ--- 304 (355)
T ss_dssp SCCCEEEECSSEEEEECTT---------SEEEEEETTTCCEEEEEEC------TTCCCCCEEEECSSEEEE-EETTE---
T ss_pred ccccccccccceeeeeecc---------cccccccccccceeccccc------CCceEEEEEcCCCCEEEE-EeCCE---
Confidence 1223455667777777753 3577888877653322111 122223334446666554 44332
Q ss_pred ccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEeccee
Q 005655 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVV 316 (685)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~ 316 (685)
+.+||+.+.+...... ....-.-.+++..++.+++.|+..
T Consensus 305 -------------i~vwd~~tg~~~~~~~---~~~~~~V~~v~~~~~~~~~~~s~d 344 (355)
T d1nexb2 305 -------------FNIYNLRSGKLVHANI---LKDADQIWSVNFKGKTLVAAVEKD 344 (355)
T ss_dssp -------------EEEEETTTCCBCCSCT---TTTCSEEEEEEEETTEEEEEEESS
T ss_pred -------------EEEEECCCCCEEEEEe---cCCCCCEEEEEEcCCeEEEEEECC
Confidence 7788887765322111 111111234445566665555543
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.13 E-value=0.3 Score=44.57 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=57.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcE---EEecCCCCCCCcceeEEEEE------CCEEEEEcCccCCCCCcc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSPNSPPPRSAHQAVSW------KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W---~~l~s~~~P~~R~~ha~v~~------~~~iyvfGG~~~s~~~~~ 151 (685)
++++|+|-| +.+|+|+-.+-.. +.|...-+-.|..-.+++.. ++++|+|-|
T Consensus 59 ~~~~yfFkG-----------~~yw~y~~~~~~~gyPk~i~~~~~glp~~iDAA~~~~~~~~~~~~~yfFkg--------- 118 (192)
T d1qhua1 59 HTSVYLIKG-----------DKVWVYTSEKNEKVYPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQG--------- 118 (192)
T ss_dssp TTEEEEEET-----------TEEEEECC-------CEEHHHHSTTCCSSCCEEEEECBBTBSSSEEEEEET---------
T ss_pred CCcEEEEeC-----------CEEEEEeCCccccCCCcChHHhCCCCCCCceEEEEccccccCCCeEEEEeC---------
Confidence 578999988 2567886443222 12221100112222333332 688999987
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
+..|+||..++.=..-.-.+.| +. .+++.+++++|+|-| +..|+||..+.+
T Consensus 119 ----~~yw~yd~~~~~~~~~~w~gip--~~-daA~~~~g~~YfFkg-----------~~y~r~~~~~~~ 169 (192)
T d1qhua1 119 ----NRKWFWDLTTGTKKERSWPAVG--NC-TSALRWLGRYYCFQG-----------NQFLRFNPVSGE 169 (192)
T ss_dssp ----TEEEEEETTTTEEEEECCTTSC--CC-SEEEEETTEEEEEET-----------TEEEEECTTTCC
T ss_pred ----CeEEEEeCCCCCcccccccCcC--Cc-ceeEEeCCcEEEEEC-----------CEEEEEcCCcce
Confidence 4689999988742221112223 22 355677999999977 467889887754
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.81 Score=41.66 Aligned_cols=134 Identities=17% Similarity=0.356 Sum_probs=69.1
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE----EecC--CCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK----VISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~----~l~s--~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~ 152 (685)
+++||+|-|. .+|+|+....... .+.. +.+| ..--++... ++++|+|-|
T Consensus 16 ~G~~y~Fkg~-----------~ywr~~~~~~~~~~~P~~I~~~w~glp--~~IDAAf~~~~~~k~yfFkg---------- 72 (195)
T d1itva_ 16 GNQLYLFKDG-----------KYWRFSEGRGSRPQGPFLIADKWPALP--RKLDSVFEEPLSKKLFFFSG---------- 72 (195)
T ss_dssp TTEEEEEETT-----------EEEEECCSSSCCCEEEEEHHHHCTTSC--SSCSEEEECTTTCCEEEEET----------
T ss_pred CCEEEEEECC-----------EEEEEeCCCCCcCCCcEEeeeecCCCC--CCccEEEEECCCCEEEEEec----------
Confidence 6899999883 4566654433221 1111 1222 222233323 578999976
Q ss_pred cccCeEEEEECCCCcE-EEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEE-----e
Q 005655 153 HHYKDFWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-----I 224 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~W-~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-----v 224 (685)
+.+|+|+-.+-.. ..|...++|..-.+-.++.. ++++|+|=| +.+|+||..+..-.. +
T Consensus 73 ---~~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG-----------~~y~ryd~~~~~v~~gyPk~i 138 (195)
T d1itva_ 73 ---RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-----------RRLWRFDVKAQMVDPRSASEV 138 (195)
T ss_dssp ---TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-----------TEEEEEETTTTEECGGGCEEH
T ss_pred ---CEEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec-----------cEEEEEeCCcccccCCCccch
Confidence 4578887432211 23443344443333233333 679999977 357999987763211 1
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEecc
Q 005655 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254 (685)
Q Consensus 225 ~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~ 254 (685)
...-. .+|.. -.++...++.+|+|-|.
T Consensus 139 ~~~w~-gvp~~--idaAf~~~~~~Yffkg~ 165 (195)
T d1itva_ 139 DRMFP-GVPLD--THDVFQFREKAYFCQDR 165 (195)
T ss_dssp HHHST-TSCSS--CSEEEEETTEEEEEETT
T ss_pred hhhcC-CCCCC--CcEEEEeCCcEEEEECC
Confidence 10001 12322 23344558889998664
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=1.6 Score=39.44 Aligned_cols=148 Identities=15% Similarity=0.295 Sum_probs=78.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEec----CCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS----SPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~----s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~ 154 (685)
++++|+|=|. .+|+++.....+.... -+..|.. --|+... ++.+|+|-|
T Consensus 18 ~g~~y~Fkg~-----------~~wr~~~~~~~~~p~~i~~~w~~lp~~--IDAAf~~~~~~~~yffkg------------ 72 (192)
T d1pexa_ 18 RGETMIFKDR-----------FFWRLHPQQVDAELFLTKSFWPELPNR--IDAAYEHPSHDLIFIFRG------------ 72 (192)
T ss_dssp TTEEEEEETT-----------EEEEECSSSSCCEEEEHHHHCTTSCSS--CCEEEEETTTTEEEEEET------------
T ss_pred CCeEEEEECC-----------EEEEEcCCCCCCcccchhhhCcCCCCc--ccceEEEcCCCEEEEEcC------------
Confidence 6899999884 3455655444333211 1222321 2233333 688999887
Q ss_pred cCeEEEEECCCCcE---EEcccCCCCCCCccc-eEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceE-----E
Q 005655 155 YKDFWMLDLKTNQW---EQLNLKGCPSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-----E 223 (685)
Q Consensus 155 ~~dv~~yD~~t~~W---~~~~~~g~P~~Rsgh-~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-----~ 223 (685)
+.+|+|+..+..+ ..+...+.|.+-.+- +++.+ ++++|+|-| +..|.||..+..-. .
T Consensus 73 -~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg-----------~~y~~y~~~~~~~~~~~pk~ 140 (192)
T d1pexa_ 73 -RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----------NQVWRYDDTNHIMDKDYPRL 140 (192)
T ss_dssp -TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----------TEEEEEETTTTEECSSCCCB
T ss_pred -CEEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC-----------CEEEEEcCccccccCCCcEE
Confidence 4578887654433 233332233332222 33333 579999977 35689987665311 1
Q ss_pred eccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEE
Q 005655 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (685)
Q Consensus 224 v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (685)
+...-. .+|. +.. ++...++.+|+|-|. ..|+||..+.+-..
T Consensus 141 I~~~w~-gvp~-~vd-Aa~~~~g~~YfF~g~------------------~y~r~~~~~~~v~~ 182 (192)
T d1pexa_ 141 IEEDFP-GIGD-KVD-AVYEKNGYIYFFNGP------------------IQFEYSIWSNRIVR 182 (192)
T ss_dssp HHHHST-TSCS-CCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred HhhcCC-CCCC-Cce-EEEEeCCEEEEEECC------------------EEEEEeCCcCeEcc
Confidence 111000 1222 222 333459999999764 27788877765443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=93.83 E-value=1.9 Score=41.82 Aligned_cols=215 Identities=9% Similarity=-0.032 Sum_probs=111.2
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
.+++.+ ++.||+..- ..+.|++|+|.++........ ..-.-+++++. ++.|||..-...
T Consensus 44 G~~~D~--~G~Ly~~D~---------~~g~I~ri~p~g~~~~~~~~~---~~~~p~gla~~~dG~l~va~~~~~------ 103 (319)
T d2dg1a1 44 GLNFDR--QGQLFLLDV---------FEGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDF------ 103 (319)
T ss_dssp EEEECT--TSCEEEEET---------TTCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTS------
T ss_pred eCEECC--CCCEEEEEC---------CCCEEEEEECCCCeEEEEEeC---CCCCeeEEEECCCCCEEEEecCCC------
Confidence 345554 466887642 124689999998865543221 11223555554 578888742111
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (685)
.....+..++..+.....+.....+..|.+-..+.-++.||+-.-.... ......++++++....+..+...
T Consensus 104 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~---~~~~g~v~~~~~dg~~~~~~~~~---- 175 (319)
T d2dg1a1 104 -KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS---TNPLGGVYYVSPDFRTVTPIIQN---- 175 (319)
T ss_dssp -SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT---TBCCEEEEEECTTSCCEEEEEEE----
T ss_pred -ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeeccccccc---ccCcceeEEEecccceeEEEeec----
Confidence 1235688888888776655432122233332223336778874221111 12345789999887776665432
Q ss_pred CCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc---eeEEeecC-CCCCCCcceeEEEEE
Q 005655 232 WPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---EWSKVKKI-GMPPGPRAGFSMCVH 305 (685)
Q Consensus 232 ~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---~W~~~~~~-g~~P~~R~g~s~~~~ 305 (685)
+..| ..++.. ++.||+.--.. +.+++|+.... .+...... ........-.++++-
T Consensus 176 ~~~p---nGia~s~dg~~lyvad~~~----------------~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD 236 (319)
T d2dg1a1 176 ISVA---NGIALSTDEKVLWVTETTA----------------NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 236 (319)
T ss_dssp ESSE---EEEEECTTSSEEEEEEGGG----------------TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred ccee---eeeeeccccceEEEecccC----------------CceEEEEEcCCCceeccccceeeeccCCccceeeeeEc
Confidence 0111 223333 55688875433 33778875432 11111100 001111122355554
Q ss_pred -CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+++|||..-. -+.|.+||+....-..+.+
T Consensus 237 ~~G~l~Va~~~--------------~g~V~~~~p~G~~l~~i~~ 266 (319)
T d2dg1a1 237 SDDNLYVAMYG--------------QGRVLVFNKRGYPIGQILI 266 (319)
T ss_dssp TTCCEEEEEET--------------TTEEEEECTTSCEEEEEEC
T ss_pred CCCCEEEEEcC--------------CCEEEEECCCCcEEEEEeC
Confidence 6788886421 2459999997665556655
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.83 E-value=1.1 Score=40.74 Aligned_cols=154 Identities=12% Similarity=0.209 Sum_probs=83.2
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEc--cc--CCCCCCCccceEEEE--CCEEEEEccccCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL--NL--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~--~~--~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~ 202 (685)
+++.+.+.||+|-|. -+|+++......... .. .++|... -++... ++++|+|-|
T Consensus 16 Av~~~~G~~y~Fkg~-------------~~wr~~~~~~~~~p~~i~~~w~glp~~I--DAAf~~~~~~~~yfFkG----- 75 (195)
T d1su3a2 16 AITTIRGEVMFFKDR-------------FYMRTNPFYPEVELNFISVFWPQLPNGL--EAAYEFADRDEVRFFKG----- 75 (195)
T ss_dssp EEEEETTEEEEEETT-------------EEEECCTTSSSCEEEEGGGTCTTSCSSC--CEEEEEGGGTEEEEEET-----
T ss_pred EEEEcCCeEEEEeCC-------------EEEEeeCCCCccCccchHhhCcCCCCcc--cceEEecCCcEEEEECC-----
Confidence 666778999999873 367766655544322 11 1233322 233334 579999988
Q ss_pred CceeeeceEEEEEcCCCce---EEeccCCCCCCCCCccceeEEE--e-CCEEEEEecccCCCCcccCCCCCCceeeeEEE
Q 005655 203 REVRYYNDLYVFDLDQFKW---QEIKPRFGSMWPSPRSGFQFFV--Y-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (685)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~W---~~v~~~~~~~~P~~Rs~~s~~~--~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (685)
+.+|+|+-.+..+ ..+...- + +|......-++. . ++++|+|-|. ..|+
T Consensus 76 ------~~y~~y~~~~~~~g~p~~i~~~~-G-~p~~~~~idaa~~~~~~~~~Y~FkG~------------------~y~r 129 (195)
T d1su3a2 76 ------NKYWAVQGQNVLHGYPKDIYSSF-G-FPRTVKHIDAALSEENTGKTYFFVAN------------------KYWR 129 (195)
T ss_dssp ------TEEEEEETTEECTTCSEEHHHHH-C-CCTTCCCCCEEEEETTTTEEEEEETT------------------EEEE
T ss_pred ------cEEEEEcCCccccCCCccchhhc-C-CCCCccccccccccCCCCeEEEEeCC------------------EEEE
Confidence 4678887432111 1111000 0 122212222222 2 6799999774 3789
Q ss_pred EeCCCceeEE-----eec--CCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 277 LDPRTWEWSK-----VKK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 277 yd~~t~~W~~-----~~~--~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
||..+.+-.. +.. .| .|. +. .++...++++|+|=|.. .|.||..+++=..+.
T Consensus 130 y~~~~~~vd~gyPk~I~~~w~G-vp~-~i-DAAf~~~g~~YfFkg~~----------------y~r~~~~~~~v~~~~ 188 (195)
T d1su3a2 130 YDEYKRSMDPGYPKMIAHDFPG-IGH-KV-DAVFMKDGFFYFFHGTR----------------QYKFDPKTKRILTLQ 188 (195)
T ss_dssp EETTTTEECSSCSEEHHHHSTT-SCS-CC-SEEEEETTEEEEEETTE----------------EEEEETTTTEEEEEE
T ss_pred EeccCccccCCcccccccccCC-CCC-Cc-cEEEEECCeEEEEECCE----------------EEEEeCCcCEEEecC
Confidence 9877653211 111 12 122 22 24445689999998753 888998877654443
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.69 Score=42.17 Aligned_cols=148 Identities=13% Similarity=0.241 Sum_probs=76.8
Q ss_pred eEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEE----Eccc--CCCCCCCccceEEEE--CCEEEEEcccc
Q 005655 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE----QLNL--KGCPSPRSGHRMVLY--KHKIIVFGGFY 199 (685)
Q Consensus 128 ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~----~~~~--~g~P~~Rsgh~~v~~--~~~lyv~GG~~ 199 (685)
-+++.++|.+|+|-| ..+|+|+....... .+.. .++|.. .. ++... ++++|+|-|
T Consensus 10 DAv~~~~G~~y~Fkg-------------~~ywr~~~~~~~~~~~P~~I~~~w~glp~~-ID-AAf~~~~~~k~yfFkg-- 72 (195)
T d1itva_ 10 DAIAEIGNQLYLFKD-------------GKYWRFSEGRGSRPQGPFLIADKWPALPRK-LD-SVFEEPLSKKLFFFSG-- 72 (195)
T ss_dssp SEEEEETTEEEEEET-------------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS-CS-EEEECTTTCCEEEEET--
T ss_pred ceEEEeCCEEEEEEC-------------CEEEEEeCCCCCcCCCcEEeeeecCCCCCC-cc-EEEEECCCCEEEEEec--
Confidence 356667899999987 35778865433321 1111 123321 22 22222 578999976
Q ss_pred CCCCceeeeceEEEEEcCCCce-EEeccCCCCCCCCC--ccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEE
Q 005655 200 DTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSP--RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (685)
Q Consensus 200 ~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~--Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (685)
+.+|+|+-..... ..|... + +|.. +...++...++++|+|=|. .+|+
T Consensus 73 ---------~~~~~y~~~~~~~Pk~i~~~--g-~p~~~~~idaa~~~~~g~~Y~FkG~------------------~y~r 122 (195)
T d1itva_ 73 ---------RQVWVYTGASVLGPRRLDKL--G-LGADVAQVTGALRSGRGKMLLFSGR------------------RLWR 122 (195)
T ss_dssp ---------TEEEEEETTEEEEEEEGGGG--T-CCTTCCCCCEEEECSTTEEEEEETT------------------EEEE
T ss_pred ---------CEEEEEcCccccCCEEhhhc--C-CCCCchheeeEEEcCCCeEEEEecc------------------EEEE
Confidence 3467776332111 112111 1 1222 2222222237899999553 2789
Q ss_pred EeCCCceeEE-----eec--CCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 277 LDPRTWEWSK-----VKK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 277 yd~~t~~W~~-----~~~--~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
||..+.+-.. +.. .| .| -.-.++..+++.+|+|-|.. .|.||..+.
T Consensus 123 yd~~~~~v~~gyPk~i~~~w~g-vp--~~idaAf~~~~~~Yffkg~~----------------y~r~~~~~~ 175 (195)
T d1itva_ 123 FDVKAQMVDPRSASEVDRMFPG-VP--LDTHDVFQFREKAYFCQDRF----------------YWRVSSRSE 175 (195)
T ss_dssp EETTTTEECGGGCEEHHHHSTT-SC--SSCSEEEEETTEEEEEETTE----------------EEEEECCTT
T ss_pred EeCCcccccCCCccchhhhcCC-CC--CCCcEEEEeCCcEEEEECCE----------------EEEEcCCce
Confidence 9887653221 100 12 12 22345556789999997742 677886554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.57 E-value=3.2 Score=39.64 Aligned_cols=147 Identities=10% Similarity=-0.075 Sum_probs=74.6
Q ss_pred cEEEEEcCCCcEEEecCCCCCC--CcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPP--PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~--~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.+++||+.+++++.+....... .|.+...+--++.||+.-..... ....-.+|.+..+..+.+... ..
T Consensus 79 gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~-------~~~~g~l~~~~~g~~~~~~~~---~~ 148 (295)
T d2ghsa1 79 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA-------ETGAGSIYHVAKGKVTKLFAD---IS 148 (295)
T ss_dssp EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC-------CTTCEEEEEEETTEEEEEEEE---ES
T ss_pred ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccc-------cccceeEeeecCCcEEEEeec---cC
Confidence 5899999999999876543222 23343333336777775432211 112333444445666555431 11
Q ss_pred CccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC------c-eEEeccCCCCCCCCCccceeEEEe-CCEEE
Q 005655 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF------K-WQEIKPRFGSMWPSPRSGFQFFVY-QDEVF 249 (685)
Q Consensus 180 Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~------~-W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iy 249 (685)
.. .+.+.. ++.+|+..-. .+.||+|++... . +..+... ...-.-.++++. ++.||
T Consensus 149 ~~-Ng~~~s~d~~~l~~~dt~---------~~~I~~~~~d~~~~~~~~~~~~~~~~~-----~~~g~pdG~~vD~~GnlW 213 (295)
T d2ghsa1 149 IP-NSICFSPDGTTGYFVDTK---------VNRLMRVPLDARTGLPTGKAEVFIDST-----GIKGGMDGSVCDAEGHIW 213 (295)
T ss_dssp SE-EEEEECTTSCEEEEEETT---------TCEEEEEEBCTTTCCBSSCCEEEEECT-----TSSSEEEEEEECTTSCEE
T ss_pred Cc-ceeeecCCCceEEEeecc---------cceeeEeeecccccccccceEEEeccC-----cccccccceEEcCCCCEE
Confidence 11 122322 4456665332 356888876421 1 1112211 011112334443 67788
Q ss_pred EEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 250 v~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
|..-..+ .+.+|||.......+..
T Consensus 214 va~~~~g----------------~V~~~dp~G~~~~~i~l 237 (295)
T d2ghsa1 214 NARWGEG----------------AVDRYDTDGNHIARYEV 237 (295)
T ss_dssp EEEETTT----------------EEEEECTTCCEEEEEEC
T ss_pred eeeeCCC----------------ceEEecCCCcEeeEecC
Confidence 7632222 28899998888877754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=93.57 E-value=3.2 Score=39.41 Aligned_cols=115 Identities=10% Similarity=0.048 Sum_probs=62.5
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCC
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~ 148 (685)
.-..+++.| ++.||+.... -+.|+++++..... .+... +..-+++++- ++.+||.+-...
T Consensus 29 ~~e~iAv~p--dG~l~vt~~~---------~~~I~~i~p~g~~~-~~~~~----~~~~~gla~~~dG~l~v~~~~~~--- 89 (302)
T d2p4oa1 29 FLENLASAP--DGTIFVTNHE---------VGEIVSITPDGNQQ-IHATV----EGKVSGLAFTSNGDLVATGWNAD--- 89 (302)
T ss_dssp CEEEEEECT--TSCEEEEETT---------TTEEEEECTTCCEE-EEEEC----SSEEEEEEECTTSCEEEEEECTT---
T ss_pred CcCCEEECC--CCCEEEEeCC---------CCEEEEEeCCCCEE-EEEcC----CCCcceEEEcCCCCeEEEecCCc---
Confidence 334567776 6788887652 24689999886543 33321 1122333333 578888763211
Q ss_pred CccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
.-..+.++.....-..+.. .+....-+.++.. ++.+|+.-.. ...+|.+|+.+..
T Consensus 90 ------~~~~~~~~~~~~~~~~~~~--~~~~~~~n~i~~~~~g~~~v~~~~---------~~~i~~~~~~~~~ 145 (302)
T d2p4oa1 90 ------SIPVVSLVKSDGTVETLLT--LPDAIFLNGITPLSDTQYLTADSY---------RGAIWLIDVVQPS 145 (302)
T ss_dssp ------SCEEEEEECTTSCEEEEEE--CTTCSCEEEEEESSSSEEEEEETT---------TTEEEEEETTTTE
T ss_pred ------eEEEEEecccccceeeccc--cCCccccceeEEccCCCEEeeccc---------cccceeeeccCCc
Confidence 1223344444555555544 3444444555554 5677664221 3578888887664
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=93.39 E-value=2.9 Score=38.34 Aligned_cols=177 Identities=12% Similarity=0.001 Sum_probs=86.7
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.+.+++..+.+....... ....+.++.. + ..+++.+.. -..+..++..+........ ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~dg~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~----~~ 157 (301)
T d1l0qa2 97 TLSVIDTTSNTVAGTVKT----GKSPLGLALSPDGKKLYVTNNG-----------DKTVSVINTVTKAVINTVS----VG 157 (301)
T ss_dssp EEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEE----CC
T ss_pred eeeecccccceeeeeccc----cccceEEEeecCCCeeeeeecc-----------ccceeeeeccccceeeecc----cC
Confidence 456677777655433221 1122333333 3 445554432 1357778888776554332 11
Q ss_pred CccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC
Q 005655 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 180 Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
..-+.++.. ++.+|+.+.. ...+..++............ +..-.+..+...+..+|+.+.-..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~v~~~~~~- 222 (301)
T d1l0qa2 158 RSPKGIAVTPDGTKVYVANFD---------SMSISVIDTVTNSVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVDKY- 222 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC-----SSEEEEEEECTTSSEEEEEEECSS-
T ss_pred CCceEEEeeccccceeeeccc---------ccccccccccceeeeecccc-----cCCcceeeccccccccccccccce-
Confidence 111222222 3455554332 23456666666655554333 111122222222666666543221
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C-CeEEEecceecccCCccccccccCCcEEE
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~ 335 (685)
.+.++++|+.+.+-...-..+ ..-.++++. + .+|||.++. -+.|.+
T Consensus 223 -------------~~~v~v~D~~t~~~~~~~~~~-----~~~~~va~spdg~~l~va~~~--------------~~~i~v 270 (301)
T d1l0qa2 223 -------------FNTVSMIDTGTNKITARIPVG-----PDPAGIAVTPDGKKVYVALSF--------------CNTVSV 270 (301)
T ss_dssp -------------CCEEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETT--------------TTEEEE
T ss_pred -------------eeeeeeeecCCCeEEEEEcCC-----CCEEEEEEeCCCCEEEEEECC--------------CCeEEE
Confidence 234889999887544332211 112344444 3 457777654 256999
Q ss_pred EECCCCcEE
Q 005655 336 FQLDNHRWY 344 (685)
Q Consensus 336 yd~~t~~W~ 344 (685)
||+.+++-.
T Consensus 271 ~D~~t~~~~ 279 (301)
T d1l0qa2 271 IDTATNTIT 279 (301)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 999998654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.31 E-value=0.65 Score=43.56 Aligned_cols=138 Identities=7% Similarity=0.012 Sum_probs=69.7
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
++.+++.|+.. ..+.+||+.+.....+.....+.+ -.+++.. ++.+++.|+.. ..+.
T Consensus 147 ~~~~l~~g~~d-----------g~i~~~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d---------~~i~ 204 (299)
T d1nr0a2 147 DKQFVAVGGQD-----------SKVHVYKLSGASVSEVKTIVHPAE--ITSVAFSNNGAFLVATDQS---------RKVI 204 (299)
T ss_dssp TSCEEEEEETT-----------SEEEEEEEETTEEEEEEEEECSSC--EEEEEECTTSSEEEEEETT---------SCEE
T ss_pred ccccccccccc-----------cccccccccccccccccccccccc--ccccccccccccccccccc---------cccc
Confidence 45677777643 457788888877665443211111 1122222 34555556542 3588
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccc-eeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecC
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSG-FQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~-~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~ 290 (685)
+||+.+......... ....... .+++.. ++.+++.||.++. +.+||+.+.....+...
T Consensus 205 ~~~~~~~~~~~~~~~----~~~h~~~v~~l~~s~~~~~l~sgs~dg~----------------i~iwd~~~~~~~~~~~~ 264 (299)
T d1nr0a2 205 PYSVANNFELAHTNS----WTFHTAKVACVSWSPDNVRLATGSLDNS----------------VIVWNMNKPSDHPIIIK 264 (299)
T ss_dssp EEEGGGTTEESCCCC----CCCCSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTCTTSCCEEET
T ss_pred ccccccccccccccc----ccccccccccccccccccceEEEcCCCE----------------EEEEECCCCCcceEEEe
Confidence 999877654322211 0111111 122233 6677788887655 77888776544333221
Q ss_pred CCCCCCcce-eEEEEECCeEEEecce
Q 005655 291 GMPPGPRAG-FSMCVHKKRALLFGGV 315 (685)
Q Consensus 291 g~~P~~R~g-~s~~~~~~~iyvfGG~ 315 (685)
.. ..... .+++..++..++.||.
T Consensus 265 ~~--~~~~~v~~~~~~~~~~l~s~s~ 288 (299)
T d1nr0a2 265 GA--HAMSSVNSVIWLNETTIVSAGQ 288 (299)
T ss_dssp TS--STTSCEEEEEEEETTEEEEEET
T ss_pred cC--CCCCcEEEEEECCCCEEEEEeC
Confidence 11 11112 2333445666777775
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=92.99 E-value=2.6 Score=40.64 Aligned_cols=173 Identities=10% Similarity=0.028 Sum_probs=88.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCcc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~ 151 (685)
+.+++.+ ++.|||..-..+. ....++.++........+.....+..|.+-.++.-++.||+..-....
T Consensus 85 ~gla~~~--dG~l~va~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~----- 152 (319)
T d2dg1a1 85 AAIKIHK--DGRLFVCYLGDFK-----STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS----- 152 (319)
T ss_dssp EEEEECT--TSCEEEEECTTSS-----SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT-----
T ss_pred eEEEECC--CCCEEEEecCCCc-----cceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeeccccccc-----
Confidence 4455554 5667665311000 123577788877776655443223333333333336788876422111
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc---e---EE
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---W---QE 223 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~---W---~~ 223 (685)
......++++++....++.+... +..| .++++- ++.||+.-- ..+.|++|++.... + ..
T Consensus 153 ~~~~g~v~~~~~dg~~~~~~~~~-~~~p---nGia~s~dg~~lyvad~---------~~~~I~~~d~~~~g~~~~~~~~~ 219 (319)
T d2dg1a1 153 TNPLGGVYYVSPDFRTVTPIIQN-ISVA---NGIALSTDEKVLWVTET---------TANRLHRIALEDDGVTIQPFGAT 219 (319)
T ss_dssp TBCCEEEEEECTTSCCEEEEEEE-ESSE---EEEEECTTSSEEEEEEG---------GGTEEEEEEECTTSSSEEEEEEE
T ss_pred ccCcceeEEEecccceeEEEeec-ccee---eeeeeccccceEEEecc---------cCCceEEEEEcCCCceeccccce
Confidence 12346799999988877765431 1111 223332 446888633 24678999875431 1 11
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 224 v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
+.... .....-..+++. ++.|||.....+ .+.+||+....-..+..
T Consensus 220 ~~~~~----~~~~~PdGl~vD~~G~l~Va~~~~g----------------~V~~~~p~G~~l~~i~~ 266 (319)
T d2dg1a1 220 IPYYF----TGHEGPDSCCIDSDDNLYVAMYGQG----------------RVLVFNKRGYPIGQILI 266 (319)
T ss_dssp EEEEC----CSSSEEEEEEEBTTCCEEEEEETTT----------------EEEEECTTSCEEEEEEC
T ss_pred eeecc----CCccceeeeeEcCCCCEEEEEcCCC----------------EEEEECCCCcEEEEEeC
Confidence 11110 111111244444 777888753322 38899997666666654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.92 E-value=3.6 Score=38.18 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=50.1
Q ss_pred ceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 209 ~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
..+..||+.+.+....... .............+..++.|+..+. +.+||..+......-
T Consensus 181 ~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~----------------i~i~d~~~~~~~~~~ 239 (355)
T d1nexb2 181 NTLIVWDVAQMKCLYILSG-----HTDRIYSTIYDHERKRCISASMDTT----------------IRIWDLENGELMYTL 239 (355)
T ss_dssp SCEEEEETTTTEEEEEECC-----CSSCEEEEEEETTTTEEEEEETTSC----------------EEEEETTTCCEEEEE
T ss_pred ceeeeeecccccceeeeec-----cccccccccccccceeeecccccce----------------EEeeecccccccccc
Confidence 3577888887765444332 1122222222225566667766544 667887766544332
Q ss_pred cCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 289 KIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 289 ~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
.. ......++...+..++.|+.. ..|.+||+.+..
T Consensus 240 ~~-----h~~~v~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~ 274 (355)
T d1nexb2 240 QG-----HTALVGLLRLSDKFLVSAAAD--------------GSIRGWDANDYS 274 (355)
T ss_dssp CC-----CSSCCCEEEECSSEEEEECTT--------------SEEEEEETTTCC
T ss_pred cc-----ccccccccccccceeeeeecc--------------cccccccccccc
Confidence 21 111123344566777777653 348888887654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.87 E-value=3.2 Score=39.58 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=41.8
Q ss_pred CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccc
Q 005655 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDV 324 (685)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~ 324 (685)
.+.+++.||.++. +.+||+.+.+....-.....|....-++.+..+++.++.||..
T Consensus 217 ~~~~l~s~~~d~~----------------i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D-------- 272 (325)
T d1pgua1 217 SGEFVITVGSDRK----------------ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-------- 272 (325)
T ss_dssp TCCEEEEEETTCC----------------EEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT--------
T ss_pred cceeccccccccc----------------eeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCC--------
Confidence 4577777887665 7788987766443322112222223344444577777887753
Q ss_pred cccccCCcEEEEECCCCcE
Q 005655 325 IMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 325 ~~~~~~ndl~~yd~~t~~W 343 (685)
..|.+||+.+++-
T Consensus 273 ------~~i~iwd~~~~~~ 285 (325)
T d1pgua1 273 ------ATIRVWDVTTSKC 285 (325)
T ss_dssp ------SEEEEEETTTTEE
T ss_pred ------CeEEEEECCCCCE
Confidence 3488999988753
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=92.70 E-value=1.1 Score=42.20 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=33.1
Q ss_pred eeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 272 ~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+.+..||+.+.+.......+. .-.++++. +++.+++||.. +.|.+||+.+.+
T Consensus 272 ~~v~v~d~~~~~~~~~~~~~~-----~~~~va~s~DG~~l~v~~~d--------------~~v~v~D~~t~~ 324 (346)
T d1jmxb_ 272 NRLAKYDLKQRKLIKAANLDH-----TYYCVAFDKKGDKLYLGGTF--------------NDLAVFNPDTLE 324 (346)
T ss_dssp SEEEEEETTTTEEEEEEECSS-----CCCEEEECSSSSCEEEESBS--------------SEEEEEETTTTE
T ss_pred CeEEEEECCCCcEEEEEcCCC-----CEEEEEEcCCCCEEEEEeCC--------------CcEEEEECccCC
Confidence 458889998887766554322 12244444 55555566652 469999998764
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.21 E-value=0.61 Score=43.77 Aligned_cols=147 Identities=8% Similarity=0.108 Sum_probs=73.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++++.| ++.++++|+. + +.+.+||+.+.+...+.....+. .-.+++.. ++..++.|+..
T Consensus 141 ~~~~s~--~~~~l~~g~~--d-------g~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d------- 200 (299)
T d1nr0a2 141 CVALSN--DKQFVAVGGQ--D-------SKVHVYKLSGASVSEVKTIVHPA--EITSVAFSNNGAFLVATDQS------- 200 (299)
T ss_dssp EEEECT--TSCEEEEEET--T-------SEEEEEEEETTEEEEEEEEECSS--CEEEEEECTTSSEEEEEETT-------
T ss_pred cccccc--cccccccccc--c-------ccccccccccccccccccccccc--cccccccccccccccccccc-------
Confidence 344444 4566666662 1 35788888877665443221111 11223332 34555666542
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
..+++||+.++........ .......-.++.+ ++.+++.||.+ +.+.+||+.+.....+....
T Consensus 201 ----~~i~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~sgs~d---------g~i~iwd~~~~~~~~~~~~~- 265 (299)
T d1nr0a2 201 ----RKVIPYSVANNFELAHTNS-WTFHTAKVACVSWSPDNVRLATGSLD---------NSVIVWNMNKPSDHPIIIKG- 265 (299)
T ss_dssp ----SCEEEEEGGGTTEESCCCC-CCCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTCTTSCCEEETT-
T ss_pred ----ccccccccccccccccccc-ccccccccccccccccccceEEEcCC---------CEEEEEECCCCCcceEEEec-
Confidence 3588999887765432221 1111112222333 56677777753 35888998876554333221
Q ss_pred CCCCCCcccee-EEEeCCEEEEEecccCC
Q 005655 230 SMWPSPRSGFQ-FFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 230 ~~~P~~Rs~~s-~~~~~~~Iyv~GG~~~~ 257 (685)
........ ++..++..++.||.++.
T Consensus 266 ---~~~~~~v~~~~~~~~~~l~s~s~D~~ 291 (299)
T d1nr0a2 266 ---AHAMSSVNSVIWLNETTIVSAGQDSN 291 (299)
T ss_dssp ---SSTTSCEEEEEEEETTEEEEEETTSC
T ss_pred ---CCCCCcEEEEEECCCCEEEEEeCCCE
Confidence 11111222 22335556677777654
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.11 E-value=1.8 Score=39.38 Aligned_cols=63 Identities=17% Similarity=0.404 Sum_probs=37.9
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcE---EEcccCCCCCCCccc-eEEEE--CCEEEEEccccCCCCceee
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW---EQLNLKGCPSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRY 207 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W---~~~~~~g~P~~Rsgh-~~v~~--~~~lyv~GG~~~~~~~~~~ 207 (685)
++.+|+|-| +.+|+|+-.+-.. ..+...++|..-.+- ++..+ ++++|+|-|
T Consensus 69 ~~~~yffkg-------------~~~~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg---------- 125 (200)
T d1gena_ 69 EEKAVFFAG-------------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG---------- 125 (200)
T ss_dssp TTEEEEEET-------------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET----------
T ss_pred CCeEEEecC-------------ceEEEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeC----------
Confidence 578999987 4688887543211 223222344332222 33343 579999988
Q ss_pred eceEEEEEcCCCc
Q 005655 208 YNDLYVFDLDQFK 220 (685)
Q Consensus 208 ~~dv~~yD~~t~~ 220 (685)
+..|+||..+..
T Consensus 126 -~~y~ryd~~~~~ 137 (200)
T d1gena_ 126 -DKFWRYNEVKKK 137 (200)
T ss_dssp -TEEEEEETTTTE
T ss_pred -cEEEEeccccce
Confidence 467999987754
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.86 E-value=3.7 Score=36.86 Aligned_cols=100 Identities=18% Similarity=0.292 Sum_probs=55.3
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEE---Eccc--CCCCCCCccceEEEE------CCEEEEEccccCCC
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE---QLNL--KGCPSPRSGHRMVLY------KHKIIVFGGFYDTL 202 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~---~~~~--~g~P~~Rsgh~~v~~------~~~lyv~GG~~~~~ 202 (685)
++++|+|-| +.+|+|+-.+...- .|.. .++| ..-.+++.+ ++++|+|-|
T Consensus 59 ~~~~yfFkG-------------~~yw~y~~~~~~~gyPk~i~~~~~glp--~~iDAA~~~~~~~~~~~~~yfFkg----- 118 (192)
T d1qhua1 59 HTSVYLIKG-------------DKVWVYTSEKNEKVYPKSLQDEFPGIP--FPLDAAVECHRGECQDEGILFFQG----- 118 (192)
T ss_dssp TTEEEEEET-------------TEEEEECC-------CEEHHHHSTTCC--SSCCEEEEECBBTBSSSEEEEEET-----
T ss_pred CCcEEEEeC-------------CEEEEEeCCccccCCCcChHHhCCCCC--CCceEEEEccccccCCCeEEEEeC-----
Confidence 579999988 46888875443321 2221 1223 222334443 689999987
Q ss_pred CceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc
Q 005655 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (685)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (685)
+..|.||..+..=..-.-. + +| ... +++..++.+|+|-|. ..|+||..+.
T Consensus 119 ------~~yw~yd~~~~~~~~~~w~--g-ip--~~d-aA~~~~g~~YfFkg~------------------~y~r~~~~~~ 168 (192)
T d1qhua1 119 ------NRKWFWDLTTGTKKERSWP--A-VG--NCT-SALRWLGRYYCFQGN------------------QFLRFNPVSG 168 (192)
T ss_dssp ------TEEEEEETTTTEEEEECCT--T-SC--CCS-EEEEETTEEEEEETT------------------EEEEECTTTC
T ss_pred ------CeEEEEeCCCCCccccccc--C-cC--Ccc-eeEEeCCcEEEEECC------------------EEEEEcCCcc
Confidence 3578999887631111111 1 12 222 444558999999664 3778887765
Q ss_pred e
Q 005655 283 E 283 (685)
Q Consensus 283 ~ 283 (685)
+
T Consensus 169 ~ 169 (192)
T d1qhua1 169 E 169 (192)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=91.64 E-value=3.8 Score=43.09 Aligned_cols=125 Identities=12% Similarity=0.076 Sum_probs=72.2
Q ss_pred eEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCC------CCCCCccceEEEECCEEEEEcccc
Q 005655 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG------CPSPRSGHRMVLYKHKIIVFGGFY 199 (685)
Q Consensus 128 ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g------~P~~Rsgh~~v~~~~~lyv~GG~~ 199 (685)
.+-+++++.|||..+ .+.|+.+|..|++ |+.-.... ..........+.+++.||+...
T Consensus 60 stPiv~~g~vyv~t~------------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 125 (560)
T d1kv9a2 60 ATPLFHDGVIYTSMS------------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-- 125 (560)
T ss_dssp CCCEEETTEEEEEEG------------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT--
T ss_pred eCCEEECCEEEEECC------------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC--
Confidence 455788999998764 2568999999885 88532210 1122233355667888877543
Q ss_pred CCCCceeeeceEEEEEcCCC--ceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEE
Q 005655 200 DTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL 277 (685)
Q Consensus 200 ~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y 277 (685)
-..|+.+|..+. .|......+. +......+.+++++.+|+-+..... .....+..|
T Consensus 126 --------~g~l~Alda~tG~~~w~~~~~~~~---~~~~~~~~p~v~~~~vivg~~~~~~-----------~~~G~v~a~ 183 (560)
T d1kv9a2 126 --------DGRLIALDAKTGKAIWSQQTTDPA---KPYSITGAPRVVKGKVIIGNGGAEY-----------GVRGFVSAY 183 (560)
T ss_dssp --------TSEEEEEETTTCCEEEEEECSCTT---SSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEE
T ss_pred --------CCEEEEEECCCCcEEeccCccCcc---cceeeeeeeeeecCcccccccceec-----------cccceEEEE
Confidence 246888998875 4765433211 1122223344557777664332221 223458899
Q ss_pred eCCCc--eeEEee
Q 005655 278 DPRTW--EWSKVK 288 (685)
Q Consensus 278 d~~t~--~W~~~~ 288 (685)
|+.+. .|+.-.
T Consensus 184 D~~TG~~~W~~~t 196 (560)
T d1kv9a2 184 DADTGKLAWRFYT 196 (560)
T ss_dssp ETTTCCEEEEEES
T ss_pred ECCCceEEeeeee
Confidence 98765 576653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=91.52 E-value=9.6 Score=39.90 Aligned_cols=121 Identities=15% Similarity=0.193 Sum_probs=69.6
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCC------CCCCcceeEEEEECCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN------SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~------~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~ 152 (685)
++.|||... .+.|+++|..+. .|+.-+... ..........++.++.+|+...
T Consensus 77 ~g~vyv~t~----------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~---------- 136 (573)
T d1kb0a2 77 DGIMYVSAS----------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------- 136 (573)
T ss_dssp TTEEEEECG----------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec----------
Confidence 788887654 257999999988 487532211 0111122345566788776532
Q ss_pred cccCeEEEEECCCCc--EEEcccCCCC-CCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEeccC
Q 005655 153 HHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPR 227 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~g~P-~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~ 227 (685)
-..++.+|..|++ |..-...+.. ........+++++.||+ |+.... ......|..||..|.+ |..-..+
T Consensus 137 --~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~viv-g~~~~~---~~~~G~v~a~D~~TG~~~W~~~t~~ 210 (573)
T d1kb0a2 137 --DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVII-GNGGAE---YGVRGYITAYDAETGERKWRWFSVP 210 (573)
T ss_dssp --TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEE-CCBCTT---TCCBCEEEEEETTTCCEEEEEESSC
T ss_pred --ccceeeeccccccceecccCccCCcceEEeecceEEEeccEEE-eecccc---ccccceEEEEecCCccceeeeeecc
Confidence 1468899998885 8764322111 11122334667888776 332211 1124679999999865 8765544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.92 E-value=5.9 Score=36.37 Aligned_cols=112 Identities=10% Similarity=0.094 Sum_probs=62.3
Q ss_pred EEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCC
Q 005655 185 MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQ 264 (685)
Q Consensus 185 ~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~ 264 (685)
....++..++.|+.+ ..+.+||+.+..-...... .. ..-.++ ...+.+++.|+.++.
T Consensus 182 ~~~~~~~~l~s~~~d---------g~i~~~d~~~~~~~~~~~~-----~~-~~v~~~-~~~~~~l~s~s~d~~------- 238 (342)
T d2ovrb2 182 SLQFDGIHVVSGSLD---------TSIRVWDVETGNCIHTLTG-----HQ-SLTSGM-ELKDNILVSGNADST------- 238 (342)
T ss_dssp EEEECSSEEEEEETT---------SCEEEEETTTCCEEEEECC-----CC-SCEEEE-EEETTEEEEEETTSC-------
T ss_pred cccCCCCEEEEEeCC---------CeEEEeecccceeeeEecc-----cc-cceeEE-ecCCCEEEEEcCCCE-------
Confidence 344566677777753 3578888877654333221 11 111222 334456677776654
Q ss_pred CCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 265 ~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
+.+||.....-...-.. .........+...++.+++.||.. ..|.+||+.+++..
T Consensus 239 ---------i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~s~D--------------g~i~iwd~~tg~~i 293 (342)
T d2ovrb2 239 ---------VKIWDIKTGQCLQTLQG--PNKHQSAVTCLQFNKNFVITSSDD--------------GTVKLWDLKTGEFI 293 (342)
T ss_dssp ---------EEEEETTTCCEEEEECS--TTSCSSCEEEEEECSSEEEEEETT--------------SEEEEEETTTCCEE
T ss_pred ---------EEEEecccccccccccc--cceeeeceeecccCCCeeEEEcCC--------------CEEEEEECCCCCEE
Confidence 77888776544333221 111222334444567777777753 34999999887653
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=90.75 E-value=1.4 Score=41.80 Aligned_cols=143 Identities=11% Similarity=0.099 Sum_probs=77.8
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (685)
..+++||..++...++.. ..+. ..+.+ +++.++++|... -..+++||..+..-..+... +
T Consensus 24 g~v~v~d~~~~~~~~~~~----~~~v--~~~~~spDg~~l~~~~~~~-------g~~v~v~d~~~~~~~~~~~~-----~ 85 (360)
T d1k32a3 24 GQAFIQDVSGTYVLKVPE----PLRI--RYVRRGGDTKVAFIHGTRE-------GDFLGIYDYRTGKAEKFEEN-----L 85 (360)
T ss_dssp TEEEEECTTSSBEEECSC----CSCE--EEEEECSSSEEEEEEEETT-------EEEEEEEETTTCCEEECCCC-----C
T ss_pred CeEEEEECCCCcEEEccC----CCCE--EEEEECCCCCEEEEEEcCC-------CCEEEEEECCCCcEEEeeCC-----C
Confidence 358888888888777632 2333 33444 676666665432 13589999999887766543 2
Q ss_pred CCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEE
Q 005655 234 SPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (685)
Q Consensus 234 ~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv 311 (685)
.. -.+++.. ++..+++++.... ++.++..+.....+.... .....++++. +++.++
T Consensus 86 ~~--v~~~~~spdg~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~spdg~~la 143 (360)
T d1k32a3 86 GN--VFAMGVDRNGKFAVVANDRFE----------------IMTVDLETGKPTVIERSR----EAMITDFTISDNSRFIA 143 (360)
T ss_dssp CS--EEEEEECTTSSEEEEEETTSE----------------EEEEETTTCCEEEEEECS----SSCCCCEEECTTSCEEE
T ss_pred ce--EEeeeecccccccceeccccc----------------cccccccccceeeeeecc----cccccchhhccceeeee
Confidence 11 2233333 6666666666543 778888777655543321 1111223332 566666
Q ss_pred ecceecccCCccccccccCCcEEEEECCCCc
Q 005655 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+++...... ........+++||+.+..
T Consensus 144 ~~~~~~~~~----~~~~~~~~~~v~d~~~~~ 170 (360)
T d1k32a3 144 YGFPLKHGE----TDGYVMQAIHVYDMEGRK 170 (360)
T ss_dssp EEEEECSST----TCSCCEEEEEEEETTTTE
T ss_pred eeccccccc----eeeccccceeeeccccCc
Confidence 655433210 111223457788887653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=89.95 E-value=11 Score=39.30 Aligned_cols=120 Identities=11% Similarity=0.134 Sum_probs=68.0
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcC-CC--cEEEecCCCCCCCcc-------eeEEEEECCEEEEEcCccCCCCCc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVE-KQ--EWKVISSPNSPPPRS-------AHQAVSWKNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~-~~--~W~~l~s~~~P~~R~-------~ha~v~~~~~iyvfGG~~~s~~~~ 150 (685)
++.|||..+. -+.|+.+|.. +. .|+.-+... +..|. ...+++.+++||+...
T Consensus 62 ~g~vyv~t~~---------~~~v~Alda~~tG~~~W~~~~~~~-~~~~~~~~~~~~~rg~a~~~~~i~~~~~-------- 123 (571)
T d2ad6a1 62 GDMMYVHSAF---------PNNTYALNLNDPGKIVWQHKPKQD-ASTKAVMCCDVVDRGLAYGAGQIVKKQA-------- 123 (571)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCC-GGGGGGCTTCSCCCCCEEETTEEEEECT--------
T ss_pred CCEEEEecCC---------CCeEEEEeCCCCCceEEEecCCCC-cccccccccCcCCCcceeeCCeEEEEeC--------
Confidence 7888887651 1468888874 44 587543211 11111 1234566788886432
Q ss_pred cccccCeEEEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEecc
Q 005655 151 RFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~ 226 (685)
-..++.+|..|++ |..-.....+......+-+++++.||+-+.... ......|..||..|.+ |+.-..
T Consensus 124 ----~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~----~~~~G~v~a~D~~TG~~~W~~~t~ 195 (571)
T d2ad6a1 124 ----NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAE----LGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGG----GTCCCEEEEEETTTCCEEEEEESS
T ss_pred ----CCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeecccc----ccccCcEEEEECCCCcEEEEEecc
Confidence 1468899999985 765321111222223344678888887543222 1234679999998754 865543
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.83 E-value=5.1 Score=36.11 Aligned_cols=150 Identities=9% Similarity=0.199 Sum_probs=76.1
Q ss_pred eEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEE---EcccC--CCCCCCccceEEEE--CCEEEEEccccC
Q 005655 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE---QLNLK--GCPSPRSGHRMVLY--KHKIIVFGGFYD 200 (685)
Q Consensus 128 ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~---~~~~~--g~P~~Rsgh~~v~~--~~~lyv~GG~~~ 200 (685)
-|++.+++.+|+|=| +.+|+++.....+. .|... ++|.. .. ++... ++.+|+|-|
T Consensus 16 DAv~~~~G~~y~Fkg-------------~~~wr~~~~~~~~~~P~~I~~~w~glp~~-Id-AA~~~~~~~~~yffkg--- 77 (200)
T d1gena_ 16 DGIAQIRGEIFFFKD-------------RFIWRTVTPRDKPMGPLLVATFWPELPEK-ID-AVYEAPQEEKAVFFAG--- 77 (200)
T ss_dssp SEEEEETTEEEEEET-------------TEEEEESSTTSCCEEEEEGGGTCTTSCSC-CS-EEEEETTTTEEEEEET---
T ss_pred eEEEecCCeEEEEeC-------------CEEEEEcCCCCCCCCcEehhhccCCCCCC-ce-EEEEECCCCeEEEecC---
Confidence 366677999999977 34676654433322 22211 22332 22 23332 668999877
Q ss_pred CCCceeeeceEEEEEcCCCce---EEeccCCCCCCCCCccceeEEEe---CCEEEEEecccCCCCcccCCCCCCceeeeE
Q 005655 201 TLREVRYYNDLYVFDLDQFKW---QEIKPRFGSMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W---~~v~~~~~~~~P~~Rs~~s~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv 274 (685)
+.+|+|+-.+... ..+... .+|..-...-++.. ++++|+|-|. ..
T Consensus 78 --------~~~~~y~~~~~~~gyPk~i~~~---g~p~~~~~iDAA~~~~~~g~~YfFkg~------------------~y 128 (200)
T d1gena_ 78 --------NEYWIYSASTLERGYPKPLTSL---GLPPDVQRVDAAFNWSKNKKTYIFAGD------------------KF 128 (200)
T ss_dssp --------TEEEEEETTEECTTCSEEGGGG---TCCTTCCCCSEEEEETTTTEEEEEETT------------------EE
T ss_pred --------ceEEEEcCcccccCCCceehhc---CCCCCccceeeEEEECCCCeEEEEeCc------------------EE
Confidence 3568886432111 111110 11222122223322 7899999774 37
Q ss_pred EEEeCCCceeE-----Eeec-CCCCCCCcceeEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 275 WSLDPRTWEWS-----KVKK-IGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 275 ~~yd~~t~~W~-----~~~~-~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
|+||..+.+=. .+.. -...|. + -.++... ++++|+|=|.. .|.||..+.+
T Consensus 129 ~ryd~~~~~vd~~yPk~I~~~w~gvp~-~-idAAf~~~~~g~~Yff~g~~----------------y~r~d~~~~~ 186 (200)
T d1gena_ 129 WRYNEVKKKMDPGFPKLIADAWNAIPD-N-LDAVVDLQGGGHSYFFKGAY----------------YLKLENQSLK 186 (200)
T ss_dssp EEEETTTTEECSSCCEEHHHHSSSCCS-S-CSEEEECTTTCEEEEEETTE----------------EEEEETTEEE
T ss_pred EEeccccceeccCcceehhhccCCCCC-C-ccEEEEecCCCEEEEEECCE----------------EEEEECCceE
Confidence 89998765421 1111 011222 2 2233333 68899997743 6888865544
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=88.57 E-value=2 Score=45.47 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=70.6
Q ss_pred EEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEeccCCCCC---CCCCccceeEEEeCCEEEEEecccCCCCc
Q 005655 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSM---WPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (685)
Q Consensus 186 v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~---~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~ 260 (685)
+++++.||+... .+.|+++|..|.+ |+.-...+... ........+++++++.||+... .
T Consensus 74 iv~~g~vyv~t~----------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-~----- 137 (573)
T d1kb0a2 74 VVVDGIMYVSAS----------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-D----- 137 (573)
T ss_dssp EEETTEEEEECG----------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-T-----
T ss_pred EEECCEEEEECC----------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-c-----
Confidence 678999998754 3568999998764 87543221000 0111222345566777776532 2
Q ss_pred ccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEEC
Q 005655 261 DKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (685)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (685)
..++++|..+. .|......+.........+.+++++.+||-+.... ..+...|.+||.
T Consensus 138 -----------g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~---------~~~~G~v~a~D~ 197 (573)
T d1kb0a2 138 -----------GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE---------YGVRGYITAYDA 197 (573)
T ss_dssp -----------SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT---------TCCBCEEEEEET
T ss_pred -----------cceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeecccc---------ccccceEEEEec
Confidence 23788887665 57764322111111222334667888776433221 223467999999
Q ss_pred CCC--cEEEEE
Q 005655 339 DNH--RWYPLE 347 (685)
Q Consensus 339 ~t~--~W~~l~ 347 (685)
.|. .|..-.
T Consensus 198 ~TG~~~W~~~t 208 (573)
T d1kb0a2 198 ETGERKWRWFS 208 (573)
T ss_dssp TTCCEEEEEES
T ss_pred CCccceeeeee
Confidence 997 476543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.03 E-value=9.8 Score=34.89 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=21.4
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEE
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV 115 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~ 115 (685)
++...| ++.+++.||. + ..|.+||+.+.....
T Consensus 60 ~l~~s~--~~~~l~sgs~--D-------g~v~iWd~~~~~~~~ 91 (340)
T d1tbga_ 60 AMHWGT--DSRLLVSASQ--D-------GKLIIWDSYTTNKVH 91 (340)
T ss_dssp EEEECT--TSSEEEEEET--T-------TEEEEEETTTTEEEE
T ss_pred EEEECC--CCCEEEEEEC--C-------CceeeeecccceeEE
Confidence 445555 5677777773 3 258889998887653
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.41 E-value=9.2 Score=33.92 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=41.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
++.+++.|+. ++ .|.+||+.+.+-...-... ...-.++.+++.+++.||.+ ..+.+
T Consensus 24 d~~~l~sgs~--Dg-------~i~vWd~~~~~~~~~l~~H----~~~V~~v~~~~~~l~s~s~D-----------~~i~~ 79 (293)
T d1p22a2 24 DDQKIVSGLR--DN-------TIKIWDKNTLECKRILTGH----TGSVLCLQYDERVIITGSSD-----------STVRV 79 (293)
T ss_dssp CSSEEEEEES--SS-------CEEEEESSSCCEEEEECCC----SSCEEEEECCSSEEEEEETT-----------SCEEE
T ss_pred cCCEEEEEeC--CC-------eEEEEECCCCcEEEEEecC----CCCEeeeecccceeeccccc-----------ccccc
Confidence 5677888873 33 5778898877655332111 11122344567777777753 34778
Q ss_pred EECCCCcEEEccc
Q 005655 161 LDLKTNQWEQLNL 173 (685)
Q Consensus 161 yD~~t~~W~~~~~ 173 (685)
+++.++.......
T Consensus 80 ~~~~~~~~~~~~~ 92 (293)
T d1p22a2 80 WDVNTGEMLNTLI 92 (293)
T ss_dssp EESSSCCEEEEEC
T ss_pred ccccccccccccc
Confidence 8888877665443
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.32 E-value=11 Score=34.58 Aligned_cols=107 Identities=12% Similarity=-0.022 Sum_probs=55.6
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~ 267 (685)
.+.+++.|+.. ..+.+||+.+..-...-.. . ..+ -.+++.. ++.+++.|+..+.
T Consensus 195 ~~~~~~~~~~d---------~~v~i~d~~~~~~~~~~~~--h--~~~--i~~v~~~p~~~~l~s~s~d~~---------- 249 (340)
T d1tbga_ 195 DTRLFVSGACD---------ASAKLWDVREGMCRQTFTG--H--ESD--INAICFFPNGNAFATGSDDAT---------- 249 (340)
T ss_dssp TSSEEEEEETT---------TEEEEEETTTTEEEEEECC--C--SSC--EEEEEECTTSSEEEEEETTSC----------
T ss_pred ccceeEEeecC---------ceEEEEECCCCcEEEEEeC--C--CCC--eEEEEECCCCCEEEEEeCCCe----------
Confidence 44555555532 4577888877643322111 0 111 1122233 5667777777655
Q ss_pred CceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+.+|++............ .....-.++++. ++.+++.|+.. +.|.+||+.+..
T Consensus 250 ------i~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~g~~d--------------g~i~iwd~~~~~ 303 (340)
T d1tbga_ 250 ------CRLFDLRADQELMTYSHD--NIICGITSVSFSKSGRLLLAGYDD--------------FNCNVWDALKAD 303 (340)
T ss_dssp ------EEEEETTTTEEEEEECCT--TCCSCEEEEEECSSSCEEEEEETT--------------SCEEEEETTTCC
T ss_pred ------EEEEeecccccccccccc--cccCceEEEEECCCCCEEEEEECC--------------CEEEEEECCCCc
Confidence 677887776554433211 111112233333 56677777653 348999987653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=86.54 E-value=17 Score=36.04 Aligned_cols=188 Identities=16% Similarity=0.129 Sum_probs=95.8
Q ss_pred ccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCC
Q 005655 101 GDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (685)
Q Consensus 101 ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (685)
+.+.++|..+++-. .+.. ...-|++++- +..||+. +.. +.+.++|+.+..-..+.. .+
T Consensus 42 g~v~v~D~~t~~v~~~~~~-----g~~~~~v~fSpDG~~l~~~-s~d-----------g~v~~~d~~t~~~~~~~~--i~ 102 (432)
T d1qksa2 42 GQIALIDGSTYEIKTVLDT-----GYAVHISRLSASGRYLFVI-GRD-----------GKVNMIDLWMKEPTTVAE--IK 102 (432)
T ss_dssp TEEEEEETTTCCEEEEEEC-----SSCEEEEEECTTSCEEEEE-ETT-----------SEEEEEETTSSSCCEEEE--EE
T ss_pred CEEEEEECCCCcEEEEEeC-----CCCeeEEEECCCCCEEEEE-cCC-----------CCEEEEEeeCCCceEEEE--Ee
Confidence 46888999988765 3332 2234555444 3566664 321 458899988876543332 12
Q ss_pred CCCccceEEEE-------CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCC------CCCCCccceeEEEe
Q 005655 178 SPRSGHRMVLY-------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS------MWPSPRSGFQFFVY 244 (685)
Q Consensus 178 ~~Rsgh~~v~~-------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~------~~P~~Rs~~s~~~~ 244 (685)
.. .+|..+++ +.+||+.+.. .+.+.+||..+.+-......... ..|.+|....++..
T Consensus 103 ~~-~~~~~~~~s~~~SpDG~~l~vs~~~---------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~ 172 (432)
T d1qksa2 103 IG-SEARSIETSKMEGWEDKYAIAGAYW---------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH 172 (432)
T ss_dssp CC-SEEEEEEECCSTTCTTTEEEEEEEE---------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred cC-CCCCCeEEecccCCCCCEEEEEcCC---------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC
Confidence 22 23333333 3467776553 35788999998876655432110 01223322222222
Q ss_pred -CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCc
Q 005655 245 -QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKG 322 (685)
Q Consensus 245 -~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~ 322 (685)
+..+|+-.... ..++.++..+..-..+... +....-+.+++. +++.++++...
T Consensus 173 dg~~~~vs~~~~----------------~~i~~~d~~~~~~~~~~~i---~~g~~~~~~~~spdg~~~~va~~~------ 227 (432)
T d1qksa2 173 YRPEFIVNVKET----------------GKILLVDYTDLNNLKTTEI---SAERFLHDGGLDGSHRYFITAANA------ 227 (432)
T ss_dssp SSSEEEEEETTT----------------TEEEEEETTCSSEEEEEEE---ECCSSEEEEEECTTSCEEEEEEGG------
T ss_pred CCCEEEEEEccC----------------CeEEEEEccCCCcceEEEE---cccCccccceECCCCCEEEEeccc------
Confidence 33344433322 2367777665433332221 223334555555 44544443332
Q ss_pred cccccccCCcEEEEECCCCcEEEEEec
Q 005655 323 DVIMSLFLNELYGFQLDNHRWYPLELR 349 (685)
Q Consensus 323 ~~~~~~~~ndl~~yd~~t~~W~~l~~~ 349 (685)
.+.+..+|..+.........
T Consensus 228 -------~~~v~v~d~~~~~~~~~~~~ 247 (432)
T d1qksa2 228 -------RNKLVVIDTKEGKLVAIEDT 247 (432)
T ss_dssp -------GTEEEEEETTTTEEEEEEEC
T ss_pred -------cceEEEeecccceEEEEecc
Confidence 35688888888766655443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=85.85 E-value=14 Score=36.66 Aligned_cols=167 Identities=11% Similarity=0.050 Sum_probs=81.3
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-------CCEEEEEcC
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-------KNYLYIFGG 142 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-------~~~iyvfGG 142 (685)
.-|.+++.|. +..||+ ++. + +.+.+||+.+..-..+... |.. .+|..+++ +..||+.+.
T Consensus 63 ~~~~v~fSpD-G~~l~~-~s~--d-------g~v~~~d~~t~~~~~~~~i--~~~-~~~~~~~~s~~~SpDG~~l~vs~~ 128 (432)
T d1qksa2 63 AVHISRLSAS-GRYLFV-IGR--D-------GKVNMIDLWMKEPTTVAEI--KIG-SEARSIETSKMEGWEDKYAIAGAY 128 (432)
T ss_dssp CEEEEEECTT-SCEEEE-EET--T-------SEEEEEETTSSSCCEEEEE--ECC-SEEEEEEECCSTTCTTTEEEEEEE
T ss_pred CeeEEEECCC-CCEEEE-EcC--C-------CCEEEEEeeCCCceEEEEE--ecC-CCCCCeEEecccCCCCCEEEEEcC
Confidence 4466666662 244444 331 1 2577888876653322110 111 12222222 346777654
Q ss_pred ccCCCCCccccccCeEEEEECCCCcEEEcccCCC---------CCCCccceEEEECC-EEEEEccccCCCCceeeeceEE
Q 005655 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC---------PSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~---------P~~Rsgh~~v~~~~-~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
. -+.+.+||..+++-........ +.+|....++..++ .+|+-... .+.++
T Consensus 129 ~-----------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~---------~~~i~ 188 (432)
T d1qksa2 129 W-----------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE---------TGKIL 188 (432)
T ss_dssp E-----------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT---------TTEEE
T ss_pred C-----------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc---------CCeEE
Confidence 3 2568899999987665432110 22332211111233 34433221 35688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe-CC-EEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecC
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~ 290 (685)
.+|..+.+-..+... +....-+.++.. ++ .+|+.++... .+..+|..+.........
T Consensus 189 ~~d~~~~~~~~~~~i-----~~g~~~~~~~~spdg~~~~va~~~~~----------------~v~v~d~~~~~~~~~~~~ 247 (432)
T d1qksa2 189 LVDYTDLNNLKTTEI-----SAERFLHDGGLDGSHRYFITAANARN----------------KLVVIDTKEGKLVAIEDT 247 (432)
T ss_dssp EEETTCSSEEEEEEE-----ECCSSEEEEEECTTSCEEEEEEGGGT----------------EEEEEETTTTEEEEEEEC
T ss_pred EEEccCCCcceEEEE-----cccCccccceECCCCCEEEEeccccc----------------eEEEeecccceEEEEecc
Confidence 888877654444443 333333445554 33 4455444332 367778777766555444
Q ss_pred C
Q 005655 291 G 291 (685)
Q Consensus 291 g 291 (685)
+
T Consensus 248 g 248 (432)
T d1qksa2 248 G 248 (432)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=85.11 E-value=5.5 Score=36.81 Aligned_cols=93 Identities=26% Similarity=0.274 Sum_probs=55.2
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
...+..++..++.+..... .|.......+....+..+++++ .+.+.+||+.+.+....-.. +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~i~v~d~~~~~~~~~~~~-----~- 279 (337)
T d1pbyb_ 218 RTGLLTMDLETGEMAMREV--RIMDVFYFSTAVNPAKTRAFGA----------YNVLESFDLEKNASIKRVPL-----P- 279 (337)
T ss_dssp EEEEEEEETTTCCEEEEEE--EECSSCEEEEEECTTSSEEEEE----------ESEEEEEETTTTEEEEEEEC-----S-
T ss_pred CccEEEEEcCCCcEEEEEe--cCCCcceEEEEecccceEEEEc----------cccEEEEECCCCcEEEEEcC-----C-
Confidence 4468889998888776554 3445554445555544445444 25688999998876554333 1
Q ss_pred CccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 235 PRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 235 ~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
..-+++++. +..|| +|+..+ .+.+||+.+.+
T Consensus 280 -~~~~~~~~s~dG~~l~-v~~~~~----------------~i~v~D~~t~~ 312 (337)
T d1pbyb_ 280 -HSYYSVNVSTDGSTVW-LGGALG----------------DLAAYDAETLE 312 (337)
T ss_dssp -SCCCEEEECTTSCEEE-EESBSS----------------EEEEEETTTCC
T ss_pred -CCEEEEEECCCCCEEE-EEeCCC----------------cEEEEECCCCc
Confidence 112334443 44455 465543 38899988753
|
| >d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=84.12 E-value=3.2 Score=37.91 Aligned_cols=102 Identities=20% Similarity=0.469 Sum_probs=53.4
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE--EecC--CCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccC
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK--VISS--PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYK 156 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~--~l~s--~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~ 156 (685)
++++|+|-|. .+|+++.....|. .+.. +.+| ..--++...++++|+|-| +
T Consensus 19 ~G~~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~W~~lp--~~IDAA~~~~~~~yfFkG-------------~ 72 (210)
T d1hxna_ 19 HGATYVFSGS-----------HYWRLDTNRDGWHSWPIAHQWPQGP--STVDAAFSWEDKLYLIQD-------------T 72 (210)
T ss_dssp TSCEEEEETT-----------EEEESSSSSCTTCCEEGGGTCTTSC--SSCSEEEEETTEEEEEET-------------T
T ss_pred CCCEEEEECC-----------EEEEEcCCCCCCCcccHHHhcCCCC--cccceEEEeCCeEEEEec-------------C
Confidence 6899999884 2344444433332 1111 1112 222344556889999987 4
Q ss_pred eEEEEECCCC-cE-----EEcc-cCCCCCCC--ccc-eEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 157 DFWMLDLKTN-QW-----EQLN-LKGCPSPR--SGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 157 dv~~yD~~t~-~W-----~~~~-~~g~P~~R--sgh-~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.+|+|...+. .- ..|. ..+.|... .+- ++.++ ++++|+|-| +..|+||..+.
T Consensus 73 ~y~~y~~~~~~~~~~GyPk~i~~~~g~p~~~~~~~IDAA~~~~~~gk~yffkG-----------~~y~ryd~~~~ 136 (210)
T d1hxna_ 73 KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-----------RRLWWLDLKSG 136 (210)
T ss_dssp EEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-----------TEEEEEEGGGG
T ss_pred EEEEEEcCCCcCccCCCCcChhhccCCCCCCCCCcEeEEEEeCCCCEEEEEEC-----------CEEEEEcCCcC
Confidence 6888865431 11 1121 11122111 111 33333 579999987 35789998653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=82.48 E-value=6.6 Score=36.37 Aligned_cols=94 Identities=20% Similarity=0.188 Sum_probs=49.8
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
..+..+|..+........ .+..+.....+.. ++..+++++ .+.+.+||+.+.+....-.. +.
T Consensus 230 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~v~d~~~~~~~~~~~~-----~~ 292 (346)
T d1jmxb_ 230 YGYLSVDLKTGKTHTQEF--ADLTELYFTGLRSPKDPNQIYGV----------LNRLAKYDLKQRKLIKAANL-----DH 292 (346)
T ss_dssp EEEEEEETTTCCEEEEEE--EECSSCEEEEEECSSCTTEEEEE----------ESEEEEEETTTTEEEEEEEC-----SS
T ss_pred ceEEEEECCCCceEEEEe--ecccceeEEEEEeCCCCEEEEec----------CCeEEEEECCCCcEEEEEcC-----CC
Confidence 346777877766544332 1233333333332 222233332 35789999998876654433 11
Q ss_pred CccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCcee
Q 005655 235 PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (685)
Q Consensus 235 ~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (685)
. -.++++. ++..++.||..+ ++.+||+.+.+=
T Consensus 293 ~--~~~va~s~DG~~l~v~~~d~----------------~v~v~D~~t~~~ 325 (346)
T d1jmxb_ 293 T--YYCVAFDKKGDKLYLGGTFN----------------DLAVFNPDTLEK 325 (346)
T ss_dssp C--CCEEEECSSSSCEEEESBSS----------------EEEEEETTTTEE
T ss_pred C--EEEEEEcCCCCEEEEEeCCC----------------cEEEEECccCCE
Confidence 1 2233333 555555666654 388999987643
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=80.67 E-value=21 Score=32.71 Aligned_cols=163 Identities=10% Similarity=0.059 Sum_probs=86.7
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.+..++.....+..+... .....+.+++. ++.+|+.... ...+++|++....-..+.. .....
T Consensus 94 ~i~~~~~~g~~~~~~~~~---~~~~p~~~avd~~G~i~v~~~~-----------~~~~~~~~~~g~~~~~~g~--~~~~~ 157 (279)
T d1q7fa_ 94 QIQIYNQYGQFVRKFGAT---ILQHPRGVTVDNKGRIIVVECK-----------VMRVIIFDQNGNVLHKFGC--SKHLE 157 (279)
T ss_dssp EEEEECTTSCEEEEECTT---TCSCEEEEEECTTSCEEEEETT-----------TTEEEEECTTSCEEEEEEC--TTTCS
T ss_pred ccccccccccceeecCCC---cccccceeccccCCcEEEEeec-----------cceeeEeccCCceeecccc--ccccc
Confidence 567777776666666432 22233344443 4678887542 2457888887655444433 12222
Q ss_pred ccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCC
Q 005655 181 SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (685)
Q Consensus 181 sgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~ 258 (685)
.-+.+++- ++.||+.... .+.|++||+.......+... +....| .++++. .+.|||...+...
T Consensus 158 ~~~~i~~d~~g~i~v~d~~---------~~~V~~~d~~G~~~~~~g~~--g~~~~P---~giavD~~G~i~Vad~~~~~- 222 (279)
T d1q7fa_ 158 FPNGVVVNDKQEIFISDNR---------AHCVKVFNYEGQYLRQIGGE--GITNYP---IGVGINSNGEILIADNHNNF- 222 (279)
T ss_dssp SEEEEEECSSSEEEEEEGG---------GTEEEEEETTCCEEEEESCT--TTSCSE---EEEEECTTCCEEEEECSSSC-
T ss_pred ccceeeeccceeEEeeecc---------ccceeeeecCCceeeeeccc--ccccCC---cccccccCCeEEEEECCCCc-
Confidence 23333333 5688887664 35789999987766666432 111222 234443 6679987544321
Q ss_pred CcccCCCCCCceeeeEEEEeCCCc-eeEEeecCCCCCCCcceeEEEEE-CCeEEEec
Q 005655 259 STDKNQSEKGIIHSDLWSLDPRTW-EWSKVKKIGMPPGPRAGFSMCVH-KKRALLFG 313 (685)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~-~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfG 313 (685)
.+.+|++... .++.... .. ....+++++. ++.|||..
T Consensus 223 --------------~v~~f~~~G~~~~~~~~~-~~---~~~p~~vav~~dG~l~V~~ 261 (279)
T d1q7fa_ 223 --------------NLTIFTQDGQLISALESK-VK---HAQCFDVALMDDGSVVLAS 261 (279)
T ss_dssp --------------EEEEECTTSCEEEEEEES-SC---CSCEEEEEEETTTEEEEEE
T ss_pred --------------EEEEECCCCCEEEEEeCC-CC---CCCEeEEEEeCCCcEEEEe
Confidence 2567776543 2222211 11 1223455555 67888754
|