Citrus Sinensis ID: 005659

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-----
MEESTSMYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKALEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSEVHLFAKYQLMVSSVLMASLPPHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGKQRTGEMDIDQSNNHGKFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMISIIYSKDRHKITIVKFVL
cccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccHHHHHHHcccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcc
ccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHHccccHHcccccccccccccHHHcccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHcHHHHHHHHHHccccccccccccccccccccccHHEEHHccccccccccccccccHHHHHHHccEEEEEEEEEc
meestsmyCNLGILEKLNDESVQEIIESYNGFcattnsllnggrdiavGKEFVTHVRSLCKHglqslahghFLRSLEETFERTFVSKFWRHFDVYSKVAVleknkpliyddEVHEVLCKALEEICMEIQYQEKCLFMLVHAiesprdcslegkpildSEVHLFAKYQLMVSSVLMaslpphfpeMLYWYFKGRLEELStimdgeledgndsqdkddmdldekgkqrtgemdidqsnnhgkfsekSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNlagedyrssVLEPIKAWIQAVPLQFLNALLAYLgesesydsptaglksplasrplccpgthnpsegLVRWRLRLEYFAYETLQDLRIAKLFEIIvdypesspaiEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLtdgtggnpngsgnagDSLLEELNrdeenqenigvddgfniddKQAWINAvcwepdpveadplkgsrnrrkvDILGMIVGIIGSKDQLVNEYRVMLADKllnksdyeIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSlagselgeegvSLGLLDAtiissnfwppmqVWSTLFLIMISIIyskdrhkiTIVKFVL
MEESTSMYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAvleknkpliydDEVHEVLCKALEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSEVHLFAKYQLMVSSVLMASLPPHFPEMLYWYFKGRLEELSTIMDGEledgndsqdkddmDLDEKGKQrtgemdidqsnnhgkfseksklVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMltdgtggnpngSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWepdpveadplkgsrnrrkVDILGMIVGiigskdqlvNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMISIIYSKDRHKITIVKFVL
MEESTSMYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKALEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSEVHLFAKYQLMVSSVLMASLPPHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGKQRTGEMDIDQSNNHGKFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQslagselgeegvslgllDATIISSNFWPPMQVWSTLFLIMISIIYSKDRHKITIVKFVL
******MYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKALEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSEVHLFAKYQLMVSSVLMASLPPHFPEMLYWYFKGRLEELSTI**********************************************LVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGE******************PLCCPGTHNPSEGLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTD******************************GVDDGFNIDDKQAWINAVCWEPDPV**********RRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATI*********LGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMISIIYSKDRHKITIVKFV*
**********LGILEKLNDESVQEIIESYNGFCAT*****************VTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSK**V****KPLIYDDEVHEVLCKALEEICMEIQYQEKCLFMLVHAIESPRDC*************LFAKYQLMVSSVLMASLPPHFPEMLYWYFKGRLEELST**************************RTGEMDIDQSNNHGKFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDG************DSLLEE**********************QAWINAVCWEPDP***************DILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKA******************LGLLDATIISSNFWPPMQVWSTLFLIMISIIYSKDRHKITIVKFVL
MEESTSMYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKALEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSEVHLFAKYQLMVSSVLMASLPPHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGKQRTGEMDIDQSNNHGKFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGESE*********KSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMISIIYSKDRHKITIVKFVL
******MYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKALEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSEVHLFAKYQLMVSSVLMASLPPHFPEMLYWYFKGRLEELSTIMDG***************************DIDQSNNHGKFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDG*************************************DDKQAWINAVCWEPDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATI****************LGLLDATIISSNFWPPMQVWSTLFLIMISIIYSKDRHKITIVKFVL
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MEESTSMYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKALEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSEVHLFAKYQLMVSSVLMASLPPHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGKQRTGEMDIDQSNNHGKFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMISIIYSKDRHKITIVKFVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query685 2.2.26 [Sep-21-2011]
Q8H1U5 865 Anaphase-promoting comple yes no 0.934 0.739 0.693 0.0
Q8BZQ7 837 Anaphase-promoting comple yes no 0.801 0.655 0.316 1e-66
Q9UJX6 822 Anaphase-promoting comple yes no 0.531 0.442 0.375 4e-65
Q551S9 907 Anaphase-promoting comple yes no 0.564 0.426 0.305 7e-49
Q874R3 681 Anaphase-promoting comple yes no 0.385 0.387 0.332 1e-32
P34514 731 Anaphase-promoting comple yes no 0.398 0.373 0.305 6e-31
Q12440 853 Anaphase-promoting comple yes no 0.332 0.267 0.235 2e-12
>sp|Q8H1U5|APC2_ARATH Anaphase-promoting complex subunit 2 OS=Arabidopsis thaliana GN=APC2 PE=1 SV=1 Back     alignment and function desciption
 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/663 (69%), Positives = 533/663 (80%), Gaps = 23/663 (3%)

Query: 1   MEESTSMYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLC 60
           ME   S  CNL ILE L+D+++QEI ESY+GF  T  SL+ G  D  V  EFV+HV  LC
Sbjct: 1   MEALGSSDCNLEILETLSDDAIQEITESYDGFFTTVESLIAGTGDSLVEDEFVSHVYCLC 60

Query: 61  KHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKA 120
           K+GL SL   HFLRSLE+ FE+   S FW+HFD YS+       K   Y +E+  VLCKA
Sbjct: 61  KYGLDSLVRDHFLRSLEQAFEKGGASSFWQHFDAYSE------KKHHNYGEEIQIVLCKA 114

Query: 121 LEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSE-VHLFAKYQLMVSSVLMASLP 179
           LEEI +E QY EKCL ++VHA++S ++ S + +   D+E VHLF+++Q M+SS LM +LP
Sbjct: 115 LEEISIEKQYHEKCLSIVVHALQSFKEQSSDDRQNSDTERVHLFSRFQSMLSSTLMTTLP 174

Query: 180 PHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGKQRTGEMDIDQSNNHG 239
            HFPE+L+WYFK RLEELS IMDG   DG + Q+ D MDLDEK + + GEMD+D+  + G
Sbjct: 175 QHFPEILHWYFKERLEELSAIMDG---DGIEEQEDDCMDLDEKLRYKNGEMDVDEGCSQG 231

Query: 240 KFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPI 299
           K     KLVK+IGKVV DLR++GFTSM ENAYASAIF LLKAKVH+LAG+DYR+SVLE I
Sbjct: 232 KRLGHDKLVKNIGKVVRDLRSIGFTSMAENAYASAIFLLLKAKVHDLAGDDYRTSVLESI 291

Query: 300 KAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTH-----NPSEGLVR 354
           K WIQ VPLQFLNALL+YLG+S SY + ++GL SPLA    CCP         PSEG+VR
Sbjct: 292 KEWIQTVPLQFLNALLSYLGDSVSYGTTSSGLTSPLA----CCPSPSFSRVVTPSEGIVR 347

Query: 355 WRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALK 414
           W+LRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFIS+LK
Sbjct: 348 WKLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISSLK 407

Query: 415 YRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLT 474
           YRLLTAGASTNDILHQYVSTIKALR IDP GVFLEAVGEPIRDYLRGRKDTIKCIVTMLT
Sbjct: 408 YRLLTAGASTNDILHQYVSTIKALRAIDPAGVFLEAVGEPIRDYLRGRKDTIKCIVTMLT 467

Query: 475 DGTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADP 534
           DG+GGN NGSGN GDSLLEEL RDEE+QEN+G DD F+ DDKQAWINA  WEPDPVEADP
Sbjct: 468 DGSGGNANGSGNPGDSLLEELMRDEESQENVGFDDDFHTDDKQAWINASRWEPDPVEADP 527

Query: 535 LKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHF 594
           LKGS ++RKVDILGM+V IIGSK+QLVNEYRVMLA+KLLNK+DY+ID+EIRT+ELLKIHF
Sbjct: 528 LKGSLSQRKVDILGMLVDIIGSKEQLVNEYRVMLAEKLLNKTDYDIDTEIRTVELLKIHF 587

Query: 595 GESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWP 654
           GE+SMQRCEIMLNDLIDSKR N NIK    K S  G+EL E  +S+  L +TI+S+NFWP
Sbjct: 588 GEASMQRCEIMLNDLIDSKRVNTNIK----KASQTGAELRENELSVDTLTSTILSTNFWP 643

Query: 655 PMQ 657
           P+Q
Sbjct: 644 PIQ 646
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8BZQ7|ANC2_MOUSE Anaphase-promoting complex subunit 2 OS=Mus musculus GN=Anapc2 PE=1 SV=2 Back     alignment and function description
>sp|Q9UJX6|ANC2_HUMAN Anaphase-promoting complex subunit 2 OS=Homo sapiens GN=ANAPC2 PE=1 SV=1 Back     alignment and function description
>sp|Q551S9|APC2_DICDI Anaphase-promoting complex subunit 2 OS=Dictyostelium discoideum GN=anapc2 PE=3 SV=1 Back     alignment and function description
>sp|Q874R3|APC2_SCHPO Anaphase-promoting complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apc2 PE=1 SV=1 Back     alignment and function description
>sp|P34514|APC2_CAEEL Anaphase-promoting complex subunit 2 OS=Caenorhabditis elegans GN=apc-2 PE=1 SV=3 Back     alignment and function description
>sp|Q12440|APC2_YEAST Anaphase-promoting complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APC2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query685
359473257 883 PREDICTED: anaphase-promoting complex su 0.956 0.741 0.764 0.0
356569362 882 PREDICTED: anaphase-promoting complex su 0.954 0.741 0.720 0.0
356537932 883 PREDICTED: anaphase-promoting complex su 0.956 0.741 0.712 0.0
224098910 870 predicted protein [Populus trichocarpa] 0.929 0.732 0.732 0.0
357474931 891 Anaphase-promoting complex subunit [Medi 0.957 0.736 0.696 0.0
449452062 879 PREDICTED: anaphase-promoting complex su 0.948 0.739 0.699 0.0
255562928 883 E3 ubiquitin ligase apc2, putative [Rici 0.957 0.742 0.733 0.0
49533765 884 Putative anaphase promoting complex prot 0.953 0.738 0.694 0.0
30678127 865 anaphase-promoting complex subunit 2 [Ar 0.934 0.739 0.693 0.0
449519148645 PREDICTED: anaphase-promoting complex su 0.919 0.976 0.703 0.0
>gi|359473257|ref|XP_002271443.2| PREDICTED: anaphase-promoting complex subunit 2-like [Vitis vinifera] gi|296086344|emb|CBI31933.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/658 (76%), Positives = 563/658 (85%), Gaps = 3/658 (0%)

Query: 3   ESTSMYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKH 62
           E+ S   +LGIL+ ++D S+ EI+ES++GFC  T +LLNG  D++VG EFV+HV SLCK 
Sbjct: 2   EAASSVSDLGILDSVDDASITEIMESWDGFCRATEALLNGHGDLSVGSEFVSHVHSLCKR 61

Query: 63  GLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKALE 122
            L SL   HFLRSLEETFER   ++FWRHFD Y+ V V+E +K  I ++ + +VL KAL+
Sbjct: 62  SLGSLVQDHFLRSLEETFERNGATRFWRHFDAYTHVEVMEMSKSPIQENGIQKVLYKALD 121

Query: 123 EICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSE-VHLFAKYQLMVSSVLMASLPPH 181
           ++ +E QYQEKCL MLVHA++S +D   E +   D+E +HLF+KYQL+VSSVLM +LP H
Sbjct: 122 DVSLEKQYQEKCLLMLVHALQSYKDSISEERHNSDAERIHLFSKYQLIVSSVLMTTLPRH 181

Query: 182 FPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGK-QRTGEMDIDQSNNHGK 240
           FPE+L+ YFKGRLEELSTIM GE ED N+S DKDDMDLDEK K    GEMDID+     K
Sbjct: 182 FPEILHCYFKGRLEELSTIMAGEYEDDNESDDKDDMDLDEKNKVSYRGEMDIDECYQRRK 241

Query: 241 FSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIK 300
           F E +KLVK+IGKVV DLR LGFTSM E+AYASAIF LLK KVHNLAG+DYRSSVLE IK
Sbjct: 242 FLENNKLVKNIGKVVRDLRNLGFTSMAEDAYASAIFLLLKDKVHNLAGDDYRSSVLESIK 301

Query: 301 AWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCC-PGTHNPSEGLVRWRLRL 359
            WIQAVPLQFL ALLAYLG+S SYD+P++GLKSPLAS P  C PG   PSEGL+RW+LRL
Sbjct: 302 EWIQAVPLQFLYALLAYLGDSVSYDNPSSGLKSPLASHPSSCYPGIDTPSEGLIRWQLRL 361

Query: 360 EYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLT 419
           EYFAYETLQDLRIAKLFEIIVDYP+SSPAIEDLKQCLEYTGQHSKLV+SFISAL+YRLLT
Sbjct: 362 EYFAYETLQDLRIAKLFEIIVDYPDSSPAIEDLKQCLEYTGQHSKLVDSFISALRYRLLT 421

Query: 420 AGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGG 479
           AGASTNDILHQYVSTIKALRTIDP GVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGG
Sbjct: 422 AGASTNDILHQYVSTIKALRTIDPAGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGG 481

Query: 480 NPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADPLKGSR 539
           NPNG GN GDSLLEELNRDEENQEN G+DD FNID+KQ WINA  WEPDPVEADP KGSR
Sbjct: 482 NPNGPGNTGDSLLEELNRDEENQENAGIDDDFNIDEKQDWINAERWEPDPVEADPSKGSR 541

Query: 540 NRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSM 599
           NRRKVDILGMIVGIIGSKDQLVNEYRVMLA+KLLNKSDY+IDSEIRTLELLKIHFGESSM
Sbjct: 542 NRRKVDILGMIVGIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSEIRTLELLKIHFGESSM 601

Query: 600 QRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQ 657
           QRCEIMLNDLIDSKRTN+NIKATI + S  GSELGE GVSL +LDATIISSNFWPP+Q
Sbjct: 602 QRCEIMLNDLIDSKRTNSNIKATITQPSQIGSELGETGVSLDILDATIISSNFWPPIQ 659

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356569362|ref|XP_003552871.1| PREDICTED: anaphase-promoting complex subunit 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356537932|ref|XP_003537460.1| PREDICTED: anaphase-promoting complex subunit 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224098910|ref|XP_002311316.1| predicted protein [Populus trichocarpa] gi|222851136|gb|EEE88683.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357474931|ref|XP_003607751.1| Anaphase-promoting complex subunit [Medicago truncatula] gi|355508806|gb|AES89948.1| Anaphase-promoting complex subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|449452062|ref|XP_004143779.1| PREDICTED: anaphase-promoting complex subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255562928|ref|XP_002522469.1| E3 ubiquitin ligase apc2, putative [Ricinus communis] gi|223538354|gb|EEF39961.1| E3 ubiquitin ligase apc2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|49533765|gb|AAT66764.1| Putative anaphase promoting complex protein, identical [Solanum demissum] Back     alignment and taxonomy information
>gi|30678127|ref|NP_178543.2| anaphase-promoting complex subunit 2 [Arabidopsis thaliana] gi|75151976|sp|Q8H1U5.1|APC2_ARATH RecName: Full=Anaphase-promoting complex subunit 2; AltName: Full=Cyclosome subunit 2 gi|23429518|gb|AAN10196.1| APC2 [Arabidopsis thaliana] gi|330250759|gb|AEC05853.1| anaphase-promoting complex subunit 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449519148|ref|XP_004166597.1| PREDICTED: anaphase-promoting complex subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query685
TAIR|locus:2049173 865 APC2 "AT2G04660" [Arabidopsis 0.934 0.739 0.686 1.3e-233
UNIPROTKB|F1NLT0 820 ANAPC2 "Uncharacterized protei 0.429 0.358 0.444 1.7e-65
UNIPROTKB|G3N1P6627 ANAPC2 "Uncharacterized protei 0.394 0.430 0.450 3.8e-64
UNIPROTKB|F1PYP1 885 TMEM210 "Uncharacterized prote 0.394 0.305 0.450 3e-62
MGI|MGI:2139135 837 Anapc2 "anaphase promoting com 0.388 0.317 0.457 6.3e-61
UNIPROTKB|Q9UJX6 822 ANAPC2 "Anaphase-promoting com 0.394 0.328 0.447 2.4e-60
RGD|1305546 539 Anapc2 "anaphase promoting com 0.388 0.493 0.457 4.2e-56
DICTYBASE|DDB_G0276377 907 anapc2 "anaphase promoting com 0.437 0.330 0.357 2.9e-53
ZFIN|ZDB-GENE-081104-256 802 anapc2 "anaphase promoting com 0.494 0.422 0.364 3.6e-52
FB|FBgn0002791 802 mr "morula" [Drosophila melano 0.372 0.317 0.433 4.8e-50
TAIR|locus:2049173 APC2 "AT2G04660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2253 (798.2 bits), Expect = 1.3e-233, P = 1.3e-233
 Identities = 455/663 (68%), Positives = 524/663 (79%)

Query:     1 MEESTSMYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLC 60
             ME   S  CNL ILE L+D+++QEI ESY+GF  T  SL+ G  D  V  EFV+HV  LC
Sbjct:     1 MEALGSSDCNLEILETLSDDAIQEITESYDGFFTTVESLIAGTGDSLVEDEFVSHVYCLC 60

Query:    61 KHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKA 120
             K+GL SL   HFLRSLE+ FE+   S FW+HFD YS     EK K   Y +E+  VLCKA
Sbjct:    61 KYGLDSLVRDHFLRSLEQAFEKGGASSFWQHFDAYS-----EK-KHHNYGEEIQIVLCKA 114

Query:   121 LEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSE-VHLFAKYQLMVSSVLMASLP 179
             LEEI +E QY EKCL ++VHA++S ++ S + +   D+E VHLF+++Q M+SS LM +LP
Sbjct:   115 LEEISIEKQYHEKCLSIVVHALQSFKEQSSDDRQNSDTERVHLFSRFQSMLSSTLMTTLP 174

Query:   180 PHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGKQRTGEMDIDQSNNHG 239
              HFPE+L+WYFK RLEELS IMDG   DG + Q+ D MDLDEK + + GEMD+D+  + G
Sbjct:   175 QHFPEILHWYFKERLEELSAIMDG---DGIEEQEDDCMDLDEKLRYKNGEMDVDEGCSQG 231

Query:   240 KFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPI 299
             K     KLVK+IGKVV DLR++GFTSM ENAYASAIF LLKAKVH+LAG+DYR+SVLE I
Sbjct:   232 KRLGHDKLVKNIGKVVRDLRSIGFTSMAENAYASAIFLLLKAKVHDLAGDDYRTSVLESI 291

Query:   300 KAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTH-----NPSEGLVR 354
             K WIQ VPLQFLNALL+YLG+S SY + ++GL SPLA    CCP         PSEG+VR
Sbjct:   292 KEWIQTVPLQFLNALLSYLGDSVSYGTTSSGLTSPLA----CCPSPSFSRVVTPSEGIVR 347

Query:   355 WRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALK 414
             W+LRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFIS+LK
Sbjct:   348 WKLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISSLK 407

Query:   415 YRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLT 474
             YRLLTAGASTNDILHQYVSTIKALR IDP GVFLEAVGEPIRDYLRGRKDTIKCIVTMLT
Sbjct:   408 YRLLTAGASTNDILHQYVSTIKALRAIDPAGVFLEAVGEPIRDYLRGRKDTIKCIVTMLT 467

Query:   475 DGTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADP 534
             DG+GGN NGSGN GDSLLEEL RDEE+QEN+G DD F+ DDKQAWINA  WEPDPVEADP
Sbjct:   468 DGSGGNANGSGNPGDSLLEELMRDEESQENVGFDDDFHTDDKQAWINASRWEPDPVEADP 527

Query:   535 LKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHF 594
             LKGS ++RKVDILGM+V IIGSK+QLVNEYRVMLA+KLLNK+DY+ID+EIRT+ELLKIHF
Sbjct:   528 LKGSLSQRKVDILGMLVDIIGSKEQLVNEYRVMLAEKLLNKTDYDIDTEIRTVELLKIHF 587

Query:   595 GESSMQRCEIMLNDLIDSKRTNANIKATIEKQXXXXXXXXXXXXXXXXXDATIISSNFWP 654
             GE+SMQRCEIMLNDLIDSKR N NIK    K                   +TI+S+NFWP
Sbjct:   588 GEASMQRCEIMLNDLIDSKRVNTNIK----KASQTGAELRENELSVDTLTSTILSTNFWP 643

Query:   655 PMQ 657
             P+Q
Sbjct:   644 PIQ 646
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS
GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0005819 "spindle" evidence=IDA
GO:0009561 "megagametogenesis" evidence=IMP
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0007276 "gamete generation" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0032875 "regulation of DNA endoreduplication" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0051302 "regulation of cell division" evidence=RCA
GO:0051510 "regulation of unidimensional cell growth" evidence=RCA
UNIPROTKB|F1NLT0 ANAPC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G3N1P6 ANAPC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYP1 TMEM210 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2139135 Anapc2 "anaphase promoting complex subunit 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UJX6 ANAPC2 "Anaphase-promoting complex subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305546 Anapc2 "anaphase promoting complex subunit 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276377 anapc2 "anaphase promoting complex subunit 2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081104-256 anapc2 "anaphase promoting complex subunit 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0002791 mr "morula" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H1U5APC2_ARATHNo assigned EC number0.69380.93430.7398yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_VIII0355
hypothetical protein (870 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pm.C_LG_XII0260
hypothetical protein (576 aa)
    ••• 0.797
estExt_fgenesh4_pm.C_LG_XVIII0257
hypothetical protein (761 aa)
    ••• 0.640
eugene3.01820024
hypothetical protein (542 aa)
    ••• 0.626
gw1.211.19.1
annotation not avaliable (709 aa)
    ••• 0.626
fgenesh4_pg.C_LG_VIII000604
hypothetical protein (1929 aa)
    ••• 0.592
fgenesh4_pg.C_scaffold_57000164
hypothetical protein (192 aa)
    ••• 0.462
fgenesh4_pm.C_LG_VII000424
hypothetical protein (192 aa)
    ••• 0.459

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query685
pfam00888603 pfam00888, Cullin, Cullin family 5e-17
smart00182143 smart00182, CULLIN, Cullin 3e-09
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score = 84.6 bits (209), Expect = 5e-17
 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 542 RKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQR 601
            K+D + ++   I  KD     YR MLA +LLN +    D+E + +E LK   G     +
Sbjct: 371 EKLDKIIVLFKYIEDKDVFEKFYRKMLAKRLLNGTSASDDAEKKMIEKLKQECGYQFTSK 430

Query: 602 CEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWP 654
            E M  D+  SK  N + K  +E        L  EG+ L      ++S+ FWP
Sbjct: 431 LERMFKDISLSKELNNSFKNHLENNLD----LLSEGIDLS---VLVLSTGFWP 476

Length = 603
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 685
KOG2165 765 consensus Anaphase-promoting complex (APC), subuni 100.0
smart00182142 CULLIN Cullin. 99.88
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 99.78
COG5647 773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 99.58
KOG2167 661 consensus Cullins [Cell cycle control, cell divisi 99.54
KOG2166 725 consensus Cullins [Cell cycle control, cell divisi 99.48
KOG2284 728 consensus E3 ubiquitin ligase, Cullin 2 component 98.37
KOG2285 777 consensus E3 ubiquitin ligase, Cullin 1 component 98.16
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1e-107  Score=904.11  Aligned_cols=541  Identities=39%  Similarity=0.568  Sum_probs=449.7

Q ss_pred             chhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcchhhhhcccccccchhhhhcCCccccchhHHHHHHHHHHHHHHH
Q 005659           48 VGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKALEEICME  127 (685)
Q Consensus        48 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~le~~l~~~~~p~FW~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~  127 (685)
                      +++++   +..++.+|+.++..++|++++|..++.++.  ||+||.++...+...++.        ...++.+--.    
T Consensus        28 ~e~~~---~~~~~~~~~~s~s~~~~~~vl~~~~~~~~~--fw~~i~~~~~~~~~~~~i--------~~l~d~~~ll----   90 (765)
T KOG2165|consen   28 MEDND---FKSLSQLGLPSLSIENFIKVLQFNNQKTIP--FWSAINQSLAKSIVAKNI--------ENLLDKTGLL----   90 (765)
T ss_pred             CchHH---HHHHHhcccchhhHHHHHHHHHHHHhhcch--HHHHHHHHHHhcchhhhH--------HHHHhHHhHH----
Confidence            66666   888999999999999999999999999986  999998665442211111        1111111111    


Q ss_pred             HHHHHHHHHHHHHhhhCCcccccCCCCCCchhhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHhhhHhhhhhhhcccccC
Q 005659          128 IQYQEKCLFMLVHAIESPRDCSLEGKPILDSEVHLFAKYQLMVSSVLMASLPPHFPEMLYWYFKGRLEELSTIMDGELED  207 (685)
Q Consensus       128 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~l~~~~p~~f~~il~~fy~~~~~~~~~~~~~~~~~  207 (685)
                      .++...++  +.++++++..            .+-..++++|+|..+++++|++|.+++..||+..|.+++.+|+...+.
T Consensus        91 ~~~~~~yi--~~~~l~~~l~------------~g~~~~i~~~~r~~~~~~lP~~f~~vl~~~~~~~l~~~~~~~~~~~~~  156 (765)
T KOG2165|consen   91 SSFKDFYI--FQVRLRFFLL------------FGNGDRIKDCLRWELYYELPLRFIEVLDVYFNEHLLELNKAMHLLLTR  156 (765)
T ss_pred             HHHHHHHH--HHHHHHHHHH------------hCcccHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            11111221  1122221111            111123999999999999999999999999999999999999754432


Q ss_pred             CCCCCCCCcccccccccccCCCCCccccccccchhhhHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHh
Q 005659          208 GNDSQDKDDMDLDEKGKQRTGEMDIDQSNNHGKFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLA  287 (685)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~e~~~~svl~~~I~~~v~~~c  287 (685)
                      .+     .|+|.+           ..+|+.....|+|...+++|+++++.|+++||.+++.++++++++..|+++++++|
T Consensus       157 ~d-----~~~dl~-----------~~gc~t~~~k~~cd~~~~~f~~l~~~Lk~~~l~~~~~ea~~s~l~l~l~~~l~d~~  220 (765)
T KOG2165|consen  157 ND-----HDIDLD-----------LQGCSTRKDKLICDQLVDLFNQLVQKLKSLNLSSVSTEAIVSVLYLKLKAFLEDRC  220 (765)
T ss_pred             CC-----cccCcc-----------ccccCchHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11     113332           24566666666667799999999999999999889999999999999999999999


Q ss_pred             hccccccchhHHHHHHHHhhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 005659          288 GEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETL  367 (685)
Q Consensus       288 ~~~~~~s~L~~l~~Wi~~V~~~~l~~vl~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~L~~~~y~~l  367 (685)
                      +|.|++++++++.+||++|+.+|+..|...                                ++..+|+.++++++|++|
T Consensus       221 ~~~~~~s~l~s~~~wI~~~~~~wl~~V~~~--------------------------------e~~~~~~~~l~~~~~~~f  268 (765)
T KOG2165|consen  221 SGVWDRSVLESFNKWINTVWGQWLKLVFSQ--------------------------------ESDHAFKLTLDYFFYEIF  268 (765)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------------------------------ccccceeeeeHHHHHHHH
Confidence            999999999999999999999999998432                                234569999999999999


Q ss_pred             HHHHHhhhhhhhcccCCchhHHHHHHHHHhhcChhhHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhCCCccc
Q 005659          368 QDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVF  447 (685)
Q Consensus       368 ~~lRI~ElFdIIvdyPdS~pAI~DLr~cL~~t~~r~~Lv~sf~~~l~~RLLhpGa~T~dIL~~YIstIkaL~iLDPsGVl  447 (685)
                      +++||+++|+||+|||+|.|||+|||+||.++++|.+|+++|++++++|||||||+|.|||++||+||||||+|||+||+
T Consensus       269 a~lr~~~~f~Iv~dyPdS~~aiedLK~cle~t~qr~~ltesfi~~l~~riL~asv~T~DIL~~YVstIkalr~lDptgV~  348 (765)
T KOG2165|consen  269 ARLRINEIFDIVLDYPDSKPAIEDLKYCLERTDQRVYLTESFISDLKTRILTASVDTVDILLRYVSTIKALRVLDPTGVI  348 (765)
T ss_pred             HHHHHhhHHHHHHhCCccchhHHHHHHHHHHhcchHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHHhhCCccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhchhhHHhhccCCchHHHHHHHhcCCCCCCCCCCCCCcccHHHHhccC-cccccccCCCCCCCcchhhhhhcCCCcc
Q 005659          448 LEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNRD-EENQENIGVDDGFNIDDKQAWINAVCWE  526 (685)
Q Consensus       448 L~~V~~PIr~YLR~R~DTVr~IV~~Ltd~~~~~~~~~~~~~~~L~eEL~~~-~~~~~~~~~ddd~~~d~~~~w~~~~~W~  526 (685)
                      |++||.|||+|||+|+|||+|||++|||..+.+.     + .+++.||+.. +..+++.+.++|...|..+.|. ..||+
T Consensus       349 Le~v~~pIR~YLr~R~DtVk~iVs~lt~~~k~~~-----~-~Dl~~els~~d~~~~e~i~~n~D~~td~~~~~e-~~~W~  421 (765)
T KOG2165|consen  349 LEKVTEPIRDYLRERKDTVKQIVSGLTDLPKSEG-----E-KDLSAELSKVDTLHDEDIGENDDSPTDDFMNYE-ILNWM  421 (765)
T ss_pred             hHHhhHhHHHHHhhCccHHHHHHHHHhcCCccCC-----c-ccHHHHHhccCccchhhcccCcCCCcchhhhhh-hhhcc
Confidence            9999999999999999999999999998743221     2 3677787764 4556677888888788888884 67999


Q ss_pred             CCCCCCCCCCCCCCccccchHHHHHHHhcChhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhhCcccccchHHHH
Q 005659          527 PDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIML  606 (685)
Q Consensus       527 PdPidA~p~~~~k~~k~~DiI~~Lisi~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E~~~LelLK~RFGe~~l~~CEVML  606 (685)
                      |||+||+|+++++++++.||++|||+||||||.||+|||+|||+|||++.+|+.++|+|+||+||.||||+.||.|||||
T Consensus       422 PdPiDA~pg~~s~k~r~~Di~~mLVsIygSKElfv~EyRnLLAdRLl~~~dy~~E~E~R~leLLKlrFgEt~lq~CevML  501 (765)
T KOG2165|consen  422 PDPIDADPGKGSSKYRKVDIFGMLVSIYGSKELFVKEYRNLLADRLLTLTDYDPEKEIRNLELLKLRFGETSLQGCEVML  501 (765)
T ss_pred             CCCccCCCCCCCcccccccHHHHHHHHHcchHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccCCccccCCCCCCcceEEEccCCCCCCCCCCccccCcch---h-hhhhhccCCceee
Q 005659          607 NDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMI---S-IIYSKDRHKITIV  681 (685)
Q Consensus       607 KDI~dSKrin~~ik~~~~~~~~~~~~~~~~~~s~~~l~a~ILS~~FWP~~~~~~~~~L~p~---E-~~Y~k~y~~~~~~  681 (685)
                      +||.+|+|||++|++....      ..+....+.+.++++|||++|||++.+. ...||-+   | +.|++.|+++|+-
T Consensus       502 ~Dv~dS~~id~~i~~~~~~------~r~~e~~~~~~i~~~IlS~~fWP~~~~~-~~~lP~pl~~el~~Y~~~Y~~~K~~  573 (765)
T KOG2165|consen  502 NDVIDSRRIDQSIHNESEL------SRGAEEVPDFGISATILSSLFWPPLCDE-AFHLPGPLEAELDKYAEIYEQLKRG  573 (765)
T ss_pred             Hhhhhhhhhhhhhhhhhhh------hcccccCCCCchhhhhhhhhcCCccccc-cccCChhHHHHHHHHHHHHHHhccC
Confidence            9999999999999986421      0122334467899999999999999973 4444433   2 9999999999974

>smart00182 CULLIN Cullin Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query685
2hye_C 759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 2e-16
1ldj_A 760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 2e-14
3dpl_C 382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
 Score = 82.2 bits (202), Expect = 2e-16
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 538 SRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGES 597
               R +D + ++   I  KD     Y+  LA +LL      +D+E   L  LK   G +
Sbjct: 427 EELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAA 486

Query: 598 SMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQ 657
              + E M  D+  SK    + K  ++ QS          +    L   I++  +WP   
Sbjct: 487 FTSKLEGMFKDMELSKDIMVHFKQHMQNQSD------SGPID---LTVNILTMGYWPTYT 537
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query685
2hye_C 759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 99.9
3dpl_C 382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 99.83
1ldj_A 760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 99.79
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
Probab=99.90  E-value=1.9e-22  Score=234.02  Aligned_cols=282  Identities=18%  Similarity=0.225  Sum_probs=183.8

Q ss_pred             HHHHHHHHHHhhhhhhhcccCCchhHHHHHHHHHhhcChhhHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhC
Q 005659          363 AYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTID  442 (685)
Q Consensus       363 ~y~~l~~lRI~ElFdIIvdyPdS~pAI~DLr~cL~~t~~r~~Lv~sf~~~l~~RLLhpGa~T~dIL~~YIstIkaL~iLD  442 (685)
                      -|-..+..|+.|-++.+..|+++ .+...|..|+++.-...++..-+.+.|.. ||. +-.+.|+-..|.-..|.     
T Consensus       258 ~Yl~~~e~rl~eE~~r~~~yL~~-~t~~~l~~~~~~~Li~~~~~~ll~~~~~~-lL~-~~~~~dL~~mY~L~~rv-----  329 (759)
T 2hye_C          258 EYLNHVSKRLEEEGDRVITYLDH-STQKPLIACVEKQLLGEHLTAILQKGLDH-LLD-ENRVPDLAQMYQLFSRV-----  329 (759)
T ss_dssp             HHHHHHHHHHHHTHHHHTTTSCT-TTHHHHHHHHHHHHTTTCSHHHHHTTHHH-HHT-TTCHHHHHHHHHHHHHS-----
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHh-cCCHHHHHHHHHHHccC-----
Confidence            36778899999999999999998 78999999988764433222111123433 554 45788888888665552     


Q ss_pred             CCccchhhhchhhHHhhccCCchHHHHHHHhcCCCCCCCCCCCCCcccHHHHhccCccc---ccccCCCCCCCc--chhh
Q 005659          443 PTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNRDEEN---QENIGVDDGFNI--DDKQ  517 (685)
Q Consensus       443 PsGVlL~~V~~PIr~YLR~R~DTVr~IV~~Ltd~~~~~~~~~~~~~~~L~eEL~~~~~~---~~~~~~ddd~~~--d~~~  517 (685)
                      |  .-|+.++.+++.|++++...+-      .+..+         .....+.|-.-...   .-......+...  --+.
T Consensus       330 ~--~~l~~l~~~~~~~I~~~g~~iv------~~~~~---------~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~  392 (759)
T 2hye_C          330 R--GGQQALLQHWSEYIKTFGTAIV------INPEK---------DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKE  392 (759)
T ss_dssp             T--THHHHHHHHHHHHHHHHHHHHH------SCGGG---------TTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             c--chHHHHHHHHHHHHHHHhHHHh------cCccc---------HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            2  3588999999999999876542      11100         01222222110000   000001111000  0001


Q ss_pred             hhhcCCCccCC-CCC-------CCCCCCCCCc------cccchHHHHHHHhcChhHHHHHHHHHHHHHhccCCCCChhHH
Q 005659          518 AWINAVCWEPD-PVE-------ADPLKGSRNR------RKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSE  583 (685)
Q Consensus       518 ~w~~~~~W~Pd-Pid-------A~p~~~~k~~------k~~DiI~~Lisi~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E  583 (685)
                      .+....|+.+. |.+       ....++.+..      ...|-+-.||+++++||+|+++|+++||+|||..++++.+.|
T Consensus       393 af~~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E  472 (759)
T 2hye_C          393 SFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAE  472 (759)
T ss_dssp             HHHHHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHH
T ss_pred             HHHHHHCCCCCchHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHH
Confidence            11112343221 111       1001111110      123456678889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCcccccchHHHHhhHHHHHHHHHHHHHHHhhhhccCCccccCCCCCCcceEEEccCCCCCCCCCCcccc
Q 005659          584 IRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLF  663 (685)
Q Consensus       584 ~~~LelLK~RFGe~~l~~CEVMLKDI~dSKrin~~ik~~~~~~~~~~~~~~~~~~s~~~l~a~ILS~~FWP~~~~~~~~~  663 (685)
                      .++|++||.+||++++++|++||+||..|+++|.+|++.....         ......++++.|||++|||.++.. ...
T Consensus       473 ~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~---------~~~~~~~~~v~VLs~~~WP~~~~~-~~~  542 (759)
T 2hye_C          473 KSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQ---------SDSGPIDLTVNILTMGYWPTYTPM-EVH  542 (759)
T ss_dssp             HHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CCCCCCEEEEEEEETTTSCCCCCC-CCC
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------cCCCCCceEEEEeCCCCCCCCCCC-CCc
Confidence            9999999999999999999999999999999999999875310         111236899999999999999764 556


Q ss_pred             Ccch--------hhhhhhccCCce
Q 005659          664 LIMI--------SIIYSKDRHKIT  679 (685)
Q Consensus       664 L~p~--------E~~Y~k~y~~~~  679 (685)
                      +|+.        +.+|.++|++=|
T Consensus       543 lP~~l~~~~~~F~~fY~~~~~gRk  566 (759)
T 2hye_C          543 LTPEMIKLQEVFKAFYLGKHSGRK  566 (759)
T ss_dssp             CCHHHHHHHHHHHHHHHTTSCSEE
T ss_pred             CCHHHHHHHHHHHHHHHhhCCCCE
Confidence            6666        588888887644
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 685
d1ldja3 276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 5e-16
d2hyec3 273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 2e-15
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Cullin homology domain
superfamily: Cullin homology domain
family: Cullin homology domain
domain: Cullin homolog 1, cul-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (188), Expect = 5e-16
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 543 KVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRC 602
            ++ + ++   I  KD     Y  MLA +L++++    D+E   +  LK   G     + 
Sbjct: 35  TLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKL 94

Query: 603 EIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQ 657
           + M  D+  SK  N   K  +        +              ++SS  WP  Q
Sbjct: 95  QRMFQDIGVSKDLNEQFKKHLTNSEPLDLD----------FSIQVLSSGSWPFQQ 139
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query685
d1ldja3 276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 99.75
d2hyec3 273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 99.73
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Cullin homology domain
superfamily: Cullin homology domain
family: Cullin homology domain
domain: Cullin homolog 1, cul-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2e-18  Score=175.33  Aligned_cols=121  Identities=22%  Similarity=0.250  Sum_probs=102.9

Q ss_pred             HHHHHhcChhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhhCcccccchHHHHhhHHHHHHHHHHHHHHHhhhhc
Q 005659          549 MIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSL  628 (685)
Q Consensus       549 ~Lisi~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E~~~LelLK~RFGe~~l~~CEVMLKDI~dSKrin~~ik~~~~~~~~  628 (685)
                      .|++++.+||+|+..|++.||+|||..++++.+.|..+|+.||.+||.+++.+|++|++|+..|++++..|++....   
T Consensus        41 ~if~~l~~KD~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~Lk~~~g~~~~~kl~~Ml~D~~~S~~~~~~f~~~~~~---  117 (276)
T d1ldja3          41 VVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTN---  117 (276)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            34555599999999999999999999999999999999999999999999999999999999999999999876531   


Q ss_pred             cCCccccCCCCCCcceEEEccCCCCCCCCCCccccCcch--------hhhhhhccCCcee
Q 005659          629 AGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMI--------SIIYSKDRHKITI  680 (685)
Q Consensus       629 ~~~~~~~~~~s~~~l~a~ILS~~FWP~~~~~~~~~L~p~--------E~~Y~k~y~~~~~  680 (685)
                             ......++++.|||+++||..+.. +..+|+.        +.+|.++|.+-|+
T Consensus       118 -------~~~~~~~~~v~Vlt~~~WP~~~~~-~~~lP~~l~~~~~~f~~~Y~~~~~~RkL  169 (276)
T d1ldja3         118 -------SEPLDLDFSIQVLSSGSWPFQQSC-TFALPSELERSYQRFTAFYASRHSGRKL  169 (276)
T ss_dssp             -------TCCCSSEEEEEEEETTTSCCCCCS-CCCCCGGGHHHHHHHHHHTTTTCTTCCE
T ss_pred             -------cCCcCceEEEEEeeCCccCcCCCC-CccCCHHHHHHHHHHHHHHHHhCCCCeE
Confidence                   111236799999999999988764 6677776        5899888886443
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure