Citrus Sinensis ID: 005660

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-----
MESTPVNWEALDALILEFAKSENLIEDSIVSSPPSSPSSSSTSSVSLSSSSYHSRLIIRQIRRSLEYGDIDAAIDLLRAHAPFILDDHRLLFRLQKQKFIELLRRGTTEDRKSAINCLRTALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAGLMSSVLRAHLHAYDPVFAMTLRYLIRLLLEERDPPATPQESLYEAPPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQNELCQMRLDVSMLDELVREYCVYRGIVDSGLSTPSGTQTISIPIKVDKPESGCCSSRNCSLEMDCSISKNSDGETSVSNTIMDGSPENNTDVISIQGADVELRFTGGPTGSNEDCSTSGSHQPESSRVLRSRSHGSGERNKRKRWRERQDDFCYNPEISLGGCNKRELNSSTLIPSTIMSREQQENYEIVLGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASHPALLKPLKETLLALLQPNEDVLVKGFPLHTLATSLQVAIGRRLGIEEPQLMKILRATLHTHNEWFKLQMCKDRFESLLRIDLLKEVYTPFLATVAMSKSHADSTQGSSQITISSNARVSEDGSSPNQVSSADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA
cccccccHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHcHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHc
cccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccEEccccccccccccccccccccccccccccccccEEEEEcccccccccccccccHHccccccccccEEccccccEEEEccccccccccccccccccccccccHcccccccccccccccEEccccccccccccHcccccccccHccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHc
MESTPVNWEALDALILEFAKsenliedsivssppsspsssstssvslssssyhSRLIIRQIRRSLEYGDIDAAIDLLRAHAPFILDDHRLLFRLQKQKFIELLRRGTTEDRKSAINCLRTalapcaldaYPEAYEEFKHVLLTFiydkddptspvaIEWAERRRFEIAGLMSSVLRAHLHAYDPVFAMTLRYLIRLLLeerdppatpqeslyeappfdevDIQALAHAVKITRQGAVDSLRFARGDLFQAFQNELCQMRLDVSMLDELVREYCVYRGivdsglstpsgtqtisipikvdkpesgccssrncslemdcsisknsdgetsvsntimdgspenntdvisiQGADvelrftggptgsnedcstsgshqpessrvlrsrshgsgernkRKRWRErqddfcynpeislggcnkrelnsstlipstimsreqQENYEIVLGMKELAGKGMAAEAVEEINAMdadffvqnpmllFQLKQVEFLKLVSCGDHSGALRVACAHlgplaashpalLKPLKETLLALlqpnedvlvkgfplhtLATSLQVAIGRRLGIEEPQLMKILRATLHTHNEWFKLQMCKDRFESLLRIDLLKEVYTPFLATVAmskshadstqgssqitissnarvsedgsspnqvssadfvcdeNAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA
MESTPVNWEALDALILEFAKSENLIEDSivssppsspsssstssvslssssyhsrLIIRQIRRSLEYGDIDAAIDLLRAHAPFILDDHRLLFRLQKQKFIELlrrgttedrkSAINCLRTALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAGLMSSVLRAHLHAYDPVFAMTLRYLIRLLLEERDPPATPQESLYEAPPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQNELCQMRLDVSMLDELVREYCVYRGivdsglstpsgtqtisipikvdkpesgCCSSRNCSLEMDCSISKNSDGETSVSNTIMDGSPENNTDVISIQGADVELRFTGGPTgsnedcstsgshqpessrvlrsrshgsgernkrkrwrerqddfcynpeislggcnkrelnSSTLIpstimsreqQENYEIVLGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASHPALLKPLKETLLALLQPNEDVLVKGFPLHTLATSLQVAIGRRLGIEEPQLMKILRATLHTHNEWFKLQMCKDRFESLLRIDLLKEVYTPFLATVAMSkshadstqgssQITISSNARVSEDGSSPNQVSSADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA
MESTPVNWEALDALILEFAKSENLIEDsivssppsspsssstssvslssssYHsrliirqirrslEYGDIDAAIDLLRAHAPFILDDHRLLFRLQKQKFIELLRRGTTEDRKSAINCLRTALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAGLMSSVLRAHLHAYDPVFAMTlrylirllleerDPPATPQESLYEAPPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQNELCQMRLDVSMLDELVREYCVYRGIVDSGLSTPSGTQTISIPIKVDKPESGCCSSRNCSLEMDCSISKNSDGETSVSNTIMDGSPENNTDVISIQGADVELRFTGGPTGSNEDCSTSGSHQPESSRVLRSRSHGSGERNKRKRWRERQDDFCYNPEISLGGCNKRELNSSTLIPSTIMSREQQENYEIVLGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASHpallkplketllallQPNEDVLVKGFPLHTLATSLQVAIGRRLGIEEPQLMKILRATLHTHNEWFKLQMCKDRFESLLRIDLLKEVYTPFLATVAMSKSHADstqgssqitissNARVSEDGSSPNQVSSADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA
*****************************************************SRLIIRQIRRSLEYGDIDAAIDLLRAHAPFILDDHRLLFRLQKQKFIELLRRGTTEDRKSAINCLRTALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAGLMSSVLRAHLHAYDPVFAMTLRYLIRLLLE****************PFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQNELCQMRLDVSMLDELVREYCVYRGIVDSGLS******TISIPI**********************************************************************************************************DFCYNPEISLGGCN*********************NYEIVLGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASHPALLKPLKETLLALLQPNEDVLVKGFPLHTLATSLQVAIGRRLGIEEPQLMKILRATLHTHNEWFKLQMCKDRFESLLRIDLLKEVYTPFLATVA************************************DFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQI**
****PVNWEALDALILEFAKSENLIEDSIVS***********************RLIIRQIRRSLEYGDIDAAIDLLRAHAPFILDDHRLLFRLQKQKFIELLRRGTTEDRKSAINCLRTALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAGLMSSVLRAH********AMTLRYLIRLLL************************************GAVDSLRFARGDLFQAFQNELCQMRLDVSMLDELVREYCVYRGIVDS************************************************************************************************************************DDFCYNPEISLGG***************************VLGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASHPALLKPLKETLLALLQPN****************LQVAIGRRLGIEEPQLMKILRATLHTHNEWF**************IDLLKEVYT***********************************************DENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA
MESTPVNWEALDALILEFAKSENLIED************************YHSRLIIRQIRRSLEYGDIDAAIDLLRAHAPFILDDHRLLFRLQKQKFIELLRRGTTEDRKSAINCLRTALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAGLMSSVLRAHLHAYDPVFAMTLRYLIRLLLEERDPPATPQESLYEAPPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQNELCQMRLDVSMLDELVREYCVYRGIVDSGLSTPSGTQTISIPIKVDKPESGCCSSRNCSLEMDCSISKNSDGETSVSNTIMDGSPENNTDVISIQGADVELRFTGGP*************************************RERQDDFCYNPEISLGGCNKRELNSSTLIPSTIMSREQQENYEIVLGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASHPALLKPLKETLLALLQPNEDVLVKGFPLHTLATSLQVAIGRRLGIEEPQLMKILRATLHTHNEWFKLQMCKDRFESLLRIDLLKEVYTPFLATVA**********************************SADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA
****PVNWEALDALILEFAKSENL***************************YHSRLIIRQIRRSLEYGDIDAAIDLLRAHAPFILDDHRLLFRLQKQKFIELLRRGTTEDRKSAINCLRTALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAGLMSSVLRAHLHAYDPVFAMTLRYLIRLLLEERDPPATPQESLYEAPPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQNELCQMRLDVSMLDELVREYCVYRGIVDS****************************NCSLEMDCSIS*********************TDVISIQGADVELRFTGGP***************************************RQDDFCYNPEISLGGCNKRELNSSTLIPSTIMSREQQENYEIVLGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASHPALLKPLKETLLALLQPNEDVLVKGFPLHTLATSLQVAIGRRLGIEEPQLMKILRATLHTHNEWFKLQMCKDRFESLLRIDLLKEVY********************************************DFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESTPVNWEALDALILEFAKSENLIEDSIVSSPPSSPSSSSTSSVSLSSSSYHSRLIIRQIRRSLEYGDIDAAIDLLRAHAPFILDDHRLLFRLQKQKFIELLRRGTTEDRKSAINCLRTALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAGLMSSVLRAHLHAYDPVFAMTLRYLIRLLLEERDPPATPQESLYEAPPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQNELCQMRLDVSMLDELVREYCVYRGIVDSGLSTPSGTQTISIPIKVDKPESGCCSSRNCSLEMDCSISKNSDGETSVSNTIMDGSPENNTDVISIQGADVELRFTGGPTGSNEDCSTSGSHQPESSRVLRSRSHGSGERNKRKRWRERQDDFCYNPEISLGGCNKRELNSSTLIPSTIMSREQQENYEIVLGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASHPALLKPLKETLLALLQPNEDVLVKGFPLHTLATSLQVAIGRRLGIEEPQLMKILRATLHTHNEWFKLQMCKDRFESLLRIDLLKEVYTPFLATVAMSKSHADSTQGSSQITISSNARVSEDGSSPNQVSSADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query685 2.2.26 [Sep-21-2011]
Q54X16228 Glucose-induced degradati yes no 0.186 0.561 0.296 4e-06
>sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2 Back     alignment and function desciption
 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 7/135 (5%)

Query: 61  IRRSLEYGDIDAAIDLLRAHAPFILDDH-RLLFRLQKQKFIELLRRGTTEDRKSAINCLR 119
           IR +++ GD++  I+++    P ILD + +L F LQ+QK IEL+R+G T +   A+   +
Sbjct: 74  IRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAE---ALKFAQ 130

Query: 120 TALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAG-LMSSVLRAH 178
             LAP   +   +  EE +  +   +++ D   SP++      +R + AG L S++L + 
Sbjct: 131 DELAPQG-EENNKFLEELEKTISLLVFE-DTAKSPLSSLLDHSQRQKTAGELNSAILLSQ 188

Query: 179 LHAYDPVFAMTLRYL 193
               DP     L+ L
Sbjct: 189 SQDKDPKLPTILKLL 203

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query685
296082437710 unnamed protein product [Vitis vinifera] 0.982 0.947 0.716 0.0
225438670690 PREDICTED: uncharacterized protein LOC10 0.973 0.966 0.720 0.0
255565128685 conserved hypothetical protein [Ricinus 0.964 0.964 0.724 0.0
224084326770 predicted protein [Populus trichocarpa] 0.963 0.857 0.717 0.0
356565624710 PREDICTED: uncharacterized protein LOC10 0.982 0.947 0.686 0.0
356514158705 PREDICTED: uncharacterized protein LOC10 0.976 0.948 0.676 0.0
449448510681 PREDICTED: uncharacterized protein LOC10 0.953 0.958 0.687 0.0
449531491602 PREDICTED: uncharacterized LOC101218546, 0.839 0.955 0.675 0.0
110737502732 hypothetical protein [Arabidopsis thalia 0.966 0.904 0.603 0.0
30698257750 uncharacterized protein [Arabidopsis tha 0.966 0.882 0.602 0.0
>gi|296082437|emb|CBI21442.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1008 bits (2607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/722 (71%), Positives = 588/722 (81%), Gaps = 49/722 (6%)

Query: 1   MESTPVNWEALDALILEFAKSENLIEDSIVSSPPSSPSSSSTSSVSLSSSSYHSRLIIRQ 60
           M+S PVNWEALD LI++FAKSENLIEDS+  +      SSS+ S S SSSSYH RLIIRQ
Sbjct: 1   MDSMPVNWEALDTLIIDFAKSENLIEDSVTCT------SSSSPSSSPSSSSYHQRLIIRQ 54

Query: 61  IRRSLEYGDIDAAIDLLRAHAPFILDDHRLLFRLQKQKFIELLRRGTTEDRKSAINCLRT 120
           IRRSLE GDIDAA DLLR HAPFILDDHR LFRLQKQKFIELLRRGT E R SAI+CLRT
Sbjct: 55  IRRSLEVGDIDAATDLLRVHAPFILDDHRFLFRLQKQKFIELLRRGTAEARDSAIDCLRT 114

Query: 121 ALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAGLMSSVLRAHLH 180
            LAPCALDAYPEAYEEFKHVLL FIYDKDDPTS VA EW+ERRRF+IAGL+SSVLRAH+H
Sbjct: 115 VLAPCALDAYPEAYEEFKHVLLAFIYDKDDPTSLVAPEWSERRRFDIAGLISSVLRAHMH 174

Query: 181 AYDPVFAMTLRYLI---------------------RLLLEERDPPATPQESLYEAPPFDE 219
           AYDP+F+MTLRYLI                     RLLLEERDPPATPQESLYE PPFDE
Sbjct: 175 AYDPLFSMTLRYLISIHKGFCFRERMSSPISDLTERLLLEERDPPATPQESLYEVPPFDE 234

Query: 220 VDIQALAHAVKITRQGAVDSLRFARGDLFQAFQNELCQMRLDVSMLDELVREYCVYRGIV 279
           VDIQALAHAV++TRQGA+DSLRFA+GDLFQAFQNELC++RLDVSMLDELVREYC+YRGIV
Sbjct: 235 VDIQALAHAVELTRQGAIDSLRFAKGDLFQAFQNELCRVRLDVSMLDELVREYCIYRGIV 294

Query: 280 DSGLSTPSGTQTISIPIKVDKPESGCCSSRNCSLEMDCSISKNSDGETSVSNTIMDGSPE 339
           DSGL++ SG +T+S P+KVD+P+ G  SSR+CSLE+DC  +K+SDGE+S+SN  M+ SPE
Sbjct: 295 DSGLASSSGVRTLSEPLKVDQPDPGYSSSRSCSLEVDCETNKHSDGESSISNAHMNNSPE 354

Query: 340 NNTDVISIQGADVELRFTGGPTGSNEDCSTSGSHQPESSRVL-RSRSHGSGERNKRKRWR 398
            N DV+     DVE+R++  PTG+ +DCSTS +H+PE+SRVL R RSHG+GER+KRKRWR
Sbjct: 355 INADVVGTPRTDVEIRYSCEPTGNRDDCSTSETHRPENSRVLQRHRSHGTGERSKRKRWR 414

Query: 399 ERQDDFCYNPEIS--------------LGGCNKRELNSSTLIPSTIMSREQQENYEIVLG 444
            R D   Y P++               LGG    E N ST+ P  I +RE    YE VL 
Sbjct: 415 GRYDKHDYVPDVQQELTATTLAIGTNLLGGQQGLE-NHSTVDP--IGNRENM--YETVLA 469

Query: 445 MKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHL 504
           MKELA +GMAAE VEE+N +D +FFVQNP+LLFQLKQVEFLKLVS GDHS ALRVAC+HL
Sbjct: 470 MKELASRGMAAEVVEEVNGIDPEFFVQNPVLLFQLKQVEFLKLVSLGDHSSALRVACSHL 529

Query: 505 GPLAASHPALLKPLKETLLALLQPNEDVLVKGFPLHTLATSLQVAIGRRLGIEEPQLMKI 564
           GPLAA+ P+LLK LKETLLALL+PNED L KG PLH LATSLQVAIGR LGIEEPQLMKI
Sbjct: 530 GPLAANDPSLLKALKETLLALLRPNEDALGKGLPLHALATSLQVAIGRWLGIEEPQLMKI 589

Query: 565 LRATLHTHNEWFKLQMCKDRFESLLRIDLLKEVYTPFLATVAMSKSHAD-STQGSSQITI 623
           +RATLHTHNEWFK+QMCKDRFE LL+ID LKE+ TP L+  A+SKS+AD ST GSSQ+T+
Sbjct: 590 MRATLHTHNEWFKIQMCKDRFEGLLKIDSLKEMNTPLLSN-AVSKSNADTSTNGSSQVTV 648

Query: 624 SSNARVSEDGSSPNQVSSADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQI 683
           SS+ R+ +DGSSP Q+SS D VCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQI
Sbjct: 649 SSSGRMVDDGSSPTQMSSRDVVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQI 708

Query: 684 FA 685
           FA
Sbjct: 709 FA 710

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225438670|ref|XP_002282018.1| PREDICTED: uncharacterized protein LOC100244129 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255565128|ref|XP_002523556.1| conserved hypothetical protein [Ricinus communis] gi|223537118|gb|EEF38751.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224084326|ref|XP_002307260.1| predicted protein [Populus trichocarpa] gi|222856709|gb|EEE94256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356565624|ref|XP_003551039.1| PREDICTED: uncharacterized protein LOC100777538 [Glycine max] Back     alignment and taxonomy information
>gi|356514158|ref|XP_003525773.1| PREDICTED: uncharacterized protein LOC100794305 [Glycine max] Back     alignment and taxonomy information
>gi|449448510|ref|XP_004142009.1| PREDICTED: uncharacterized protein LOC101218546 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449531491|ref|XP_004172719.1| PREDICTED: uncharacterized LOC101218546, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|110737502|dbj|BAF00693.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30698257|ref|NP_201482.2| uncharacterized protein [Arabidopsis thaliana] gi|332010882|gb|AED98265.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query685
TAIR|locus:2175014750 AT5G66810 "AT5G66810" [Arabido 0.973 0.889 0.474 4.5e-146
DICTYBASE|DDB_G0279265228 DDB_G0279265 "UPF0559 protein" 0.163 0.491 0.302 0.00047
TAIR|locus:2175014 AT5G66810 "AT5G66810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1427 (507.4 bits), Expect = 4.5e-146, P = 4.5e-146
 Identities = 337/710 (47%), Positives = 422/710 (59%)

Query:     1 MESTPVNWEALDALILEFAKSENLIEDXXXXXXXX---XXXXXXXXXXXXXXXXYHXXXX 57
             M+STPVNWEALDALI++F  SENL+ED                           YH    
Sbjct:    57 MDSTPVNWEALDALIIDFVSSENLVEDAAAAVNSPPSPLSSPSSSSSPSISSSSYHSRLI 116

Query:    58 XXXXXXXXEYGDIDAAIDLLRAHAPFILDDHRLLFRLQKQKFIELLRRGTTEDRKSAINC 117
                     E GDI+ AID+LR+HAPF+LDDHR+LFRLQKQKFIELLR+GT E   +AI+C
Sbjct:   117 IRRIRSSIESGDIETAIDILRSHAPFVLDDHRILFRLQKQKFIELLRKGTHE---AAIDC 173

Query:   118 LRTALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAGLMSSVLRA 177
             LRT +APCALDAYPEAYEEFKHVLL  IYDKDD TSPVA EWAE+RR+E+AGLMSSVLRA
Sbjct:   174 LRTCVAPCALDAYPEAYEEFKHVLLALIYDKDDQTSPVANEWAEKRRYEMAGLMSSVLRA 233

Query:   178 HLHAYDPVFAMTXXXXXXXXX--------XXXDPPATPQESLYE--AP--PFDEVDIQAL 225
              L AYDPVF+MT                        T +  L E  AP  P + +     
Sbjct:   234 SLQAYDPVFSMTLRYLISIHKGFCFHQGISSAVSDLTHRLLLEERDAPATPIESMYEVPP 293

Query:   226 AHAVKITRQG-AVDSLRFARGDLFQAFQNELCQM---RLDVSMLDELVREYCVYRGIVDS 281
                V I     AV+  R    D  +  + +L Q     L    LD  V +  V    +  
Sbjct:   294 FDEVDIQALAHAVELTRQGAVDSMKFAKGDLFQAFQNELCRMRLDVSVLDELVKEYCIYR 353

Query:   282 GLSTPSGTQTISIPIKVDKPESGCCSSRNCSLEMDCSISKNSDGETSVSNTIMDGSPENN 341
             G+   S  Q I+IP K ++ E G   SR+CS E+D + S++SD E   + +++DGS   +
Sbjct:   354 GI-VDSEMQMITIPAKRNQSEVGRSLSRDCSSEIDLNTSQHSDIENYSNKSMLDGSLTYD 412

Query:   342 TDVISIQGADVELRFTGGPTGSNEDCSTSGSHQPESSR-VLRSRSHGSGERNKRKRWRER 400
             T++   +G DV  R+   PT   EDCSTS S+Q E++R +LR RSH + E NKRKRW  R
Sbjct:   413 TEMSCEEGGDVGTRYGSEPTSVCEDCSTSWSNQCENTRALLRIRSHMNSEGNKRKRWCGR 472

Query:   401 QDDFCYNPEISLGGCNKRELNSSTLIPSTIMSREQQENYEIVLGMKELAGKGMAAEAVEE 460
               +    P IS          S T   + I     ++ YEI L +KEL  +GMAAEA  E
Sbjct:   473 TAEMDCLPRISFANSE-----SGT---NPI-----EDKYEIALALKELVSRGMAAEAFSE 519

Query:   461 INAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASHXXXXXXXXX 520
             I+ MD DFF QNP LLF LKQVEFLKLVS GDH+GAL+VAC HLGPLAA+          
Sbjct:   520 ISTMDPDFFTQNPGLLFHLKQVEFLKLVSAGDHNGALKVACFHLGPLAANDQSLLKTLKE 579

Query:   521 XXXXXXQPNEDVLVKGFPLHTLATSLQVAIGRRLGIEEPQLMKILRATLHTHNEWFKLQM 580
                   QP+     K  PL+ LA +LQV++G RLGIEEP+LMKI++ATLHTH EWFKLQM
Sbjct:   580 TLLVLLQPDGTAPGKDLPLNDLANTLQVSVGNRLGIEEPKLMKIIKATLHTHTEWFKLQM 639

Query:   581 CKDRFESLLRIDLLKEVYTPFLATV-AMSKSHADXXXXXXXXXXXXNARVSEDGSSPN-- 637
             CKDRF +LL+ID LKEV T  +  + + SK  ++            +   SEDG S +  
Sbjct:   640 CKDRFNNLLKIDSLKEVNTDLIGAIKSKSKKDSNTNLSSQVTTTSSSTMTSEDGGSSSLM 699

Query:   638 ---QVSSADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 684
                Q    + + +E+AILKVMEFLA+PR+DAI LL+QYNG+AE VIQQ+F
Sbjct:   700 MMTQTLPREALWEESAILKVMEFLAMPRSDAIQLLSQYNGDAEAVIQQLF 749
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
DICTYBASE|DDB_G0279265 DDB_G0279265 "UPF0559 protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019470001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (674 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query685
pfam10607144 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif 3e-11
smart0066858 smart00668, CTLH, C-terminal to LisH motif 2e-09
>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain Back     alignment and domain information 
 Score = 61.4 bits (150), Expect = 3e-11
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 10/125 (8%)

Query: 59  RQIRRSLEYGDIDAAIDLLRAHAPFILD-DHRLLFRLQKQKFIELLRRGTTEDRKSAINC 117
            +IR SL  GD++ A++    + P +L  +  L F L+ Q+FIEL+R G   +   A+  
Sbjct: 6   NKIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILE---ALEY 62

Query: 118 LRTALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAGLMSSVLRA 177
            R  LAP   + +    +E + ++    +     +SP     +  R  ++A   +   RA
Sbjct: 63  ARENLAPFFNEQHL---KEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLA---NEFNRA 116

Query: 178 HLHAY 182
            L   
Sbjct: 117 ILKLL 121

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144
>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 685
KOG2659228 consensus LisH motif-containing protein [Cytoskele 100.0
KOG2659228 consensus LisH motif-containing protein [Cytoskele 99.97
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 99.97
KOG0396389 consensus Uncharacterized conserved protein [Funct 99.93
PF10607145 CLTH: CTLH/CRA C-terminal to LisH motif domain; In 99.91
PF10607145 CLTH: CTLH/CRA C-terminal to LisH motif domain; In 99.73
smart0075799 CRA CT11-RanBPM. protein-protein interaction domai 99.4
smart0066858 CTLH C-terminal to LisH motif. Alpha-helical motif 98.97
smart0075799 CRA CT11-RanBPM. protein-protein interaction domai 98.82
smart0066858 CTLH C-terminal to LisH motif. Alpha-helical motif 98.73
KOG0396389 consensus Uncharacterized conserved protein [Funct 98.55
KOG0293519 consensus WD40 repeat-containing protein [Function 97.81
PF0851327 LisH: LisH; InterPro: IPR013720 The LisH motif is 97.62
COG5109396 Uncharacterized conserved protein, contains RING Z 97.56
smart0066734 LisH Lissencephaly type-1-like homology motif. Alp 97.47
KOG1477469 consensus SPRY domain-containing proteins [General 97.29
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 97.23
KOG0275508 consensus Conserved WD40 repeat-containing protein 89.96
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 86.32
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=9.7e-36  Score=299.57  Aligned_cols=200  Identities=28%  Similarity=0.423  Sum_probs=179.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHcCChhhHhhhcCCCCCCCCCCCcccCCchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 005660            1 MESTPVNWEALDALILEFAKSENLIEDSIVSSPPSSPSSSSTSSVSLSSSSYHSRLIIRQIRRSLEYGDIDAAIDLLRAH   80 (685)
Q Consensus         1 me~~~Vnk~~LnrLVldYLvreGY~EtAeaFa~ESgi~~~s~~~~Dl~s~~i~~R~~i~~IreaIl~GdId~ALewln~~   80 (685)
                      ++.+.+..+++|+||+|||+++||.|+|+.|++|+|+..|   ..|+++  ++.|.   +||++|+.|+|+.||+.++++
T Consensus        19 ~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~---~~d~~~--~~eR~---~Ir~~I~~G~Ie~Aie~in~l   90 (228)
T KOG2659|consen   19 LMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPP---SIDLDS--MDERL---QIRRAIEEGQIEEAIEKVNQL   90 (228)
T ss_pred             HhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCc---cCchhh--HhHHH---HHHHHHHhccHHHHHHHHHHh
Confidence            3578899999999999999999999999999999999853   245565  99999   999999999999999999999


Q ss_pred             CcCccc-cCccceehhhhHHHHHHhcCCCccHHHHHHHHHHhcccccccCChhHHHHHHHHHhHhcccCCCCCCchHhhh
Q 005660           81 APFILD-DHRLLFRLQKQKFIELLRRGTTEDRKSAINCLRTALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEW  159 (685)
Q Consensus        81 ~P~LL~-ns~LeFkL~~QqFIELIR~g~e~~~~EALeyARt~LaP~ald~~pe~l~ELe~~MgLLAY~~dpe~SPya~LL  159 (685)
                      +|++|+ |.+|+|+|++|+||||||.|.   .++||+|||++|+|++ ..+++++.+++++|++|+| ++++.||+++||
T Consensus        91 ~PeiLd~n~~l~F~Lq~q~lIEliR~~~---~eeal~F~q~~LA~~a-~e~~~~~~elE~~l~lLvf-~~~~~sp~~~l~  165 (228)
T KOG2659|consen   91 NPEILDTNRELFFHLQQLHLIELIREGK---TEEALEFAQTKLAPFA-EENPKKMEELERTLALLVF-ELSQESPSAELL  165 (228)
T ss_pred             ChHHHccchhHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHccccc-cccHHHHHHHHHHHHHHHc-CCcccCcHHHHH
Confidence            999999 889999999999999999999   9999999999999999 6777999999999999999 799999999999


Q ss_pred             chhhHHHHHHH-HHHHHHhcccCCCcHHHHHHHHHHHHH-hhcCCCCCCCccccCC
Q 005660          160 AERRRFEIAGL-MSSVLRAHLHAYDPVFAMTLRYLIRLL-LEERDPPATPQESLYE  213 (685)
Q Consensus       160 s~srR~~LAee-NsAIL~~~~~a~~p~L~~LLK~llw~l-l~erD~p~~~~e~dL~  213 (685)
                      +.++|+++|+. |++||..+.....|+|+.|+|.+.|.. -.+++..+.|...++.
T Consensus       166 ~~s~R~kvA~~vN~aiL~~~~~~~~~~l~~llk~~~~~~~~~~~~~~~~~~~~~~~  221 (228)
T KOG2659|consen  166 SQSLRQKVASEVNSAILASQEHESEPKLPFLLKLISWAQEELDREKFSEPHFKDLT  221 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhHhhccccccCCcc
Confidence            99999999999 999999999888999999999999942 2334444443344333

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton] Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0396 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 Back     alignment and domain information
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 Back     alignment and domain information
>smart00757 CRA CT11-RanBPM Back     alignment and domain information
>smart00668 CTLH C-terminal to LisH motif Back     alignment and domain information
>smart00757 CRA CT11-RanBPM Back     alignment and domain information
>smart00668 CTLH C-terminal to LisH motif Back     alignment and domain information
>KOG0396 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions Back     alignment and domain information
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>smart00667 LisH Lissencephaly type-1-like homology motif Back     alignment and domain information
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only] Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query685
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 47/331 (14%), Positives = 95/331 (28%), Gaps = 88/331 (26%)

Query: 401 QDDF-----CYNPEISLGGCNKRELNSSTLIPSTIMSREQQENYEIVLGMKELAGKGMAA 455
           +D F     C + +        + + S   I   IMS++       +        + M  
Sbjct: 26  EDAFVDNFDCKDVQDMP-----KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 456 EAVEEINAMDADFFVQNPMLLFQLKQVEFLKLVSCGD--HSGALRVACAHLGPLAASHPA 513
           + VEE+  ++  F +       +   +     +   D  ++     A         S   
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-----KYNVSRLQ 135

Query: 514 LLKPLKETLLALLQPNEDVLV---KGFPLHTLATSLQVA-----------------IGRR 553
               L++ LL  L+P ++VL+    G     +A  L V                  +   
Sbjct: 136 PYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVA--LDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 554 LGIEEPQLMKILRATLHT-----------------HNEWFK-----LQMCKDRFESLLRI 591
              E   ++++L+  L+                       +     L   K     LL  
Sbjct: 193 NSPET--VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-- 248

Query: 592 DLLKEVYTPFLATVAMSKSHADSTQGSSQITI-SSNARVSE--DGSSPNQVSSAD----F 644
            +L  V          +    ++   S +I + +   +V++    ++   +S        
Sbjct: 249 -VLLNVQ---------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 645 VCDENAIL--KV--MEFLALPR-ADAIHLLA 670
             DE   L  K        LPR     +   
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query685
2di0_A71 Activating signal cointegrator 1 complex subunit 2 89.39
1veg_A83 NEDD8 ultimate buster-1; ubiquitin associated doma 88.64
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 88.6
2g3q_A43 Protein YBL047C; endocytosis, solution structure, 86.94
2ekk_A47 UBA domain from E3 ubiquitin-protein ligase HUWE1; 86.5
2dak_A63 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 84.47
2cpw_A64 CBL-interacting protein STS-1 variant; ubiquitin a 84.41
1uuj_A88 Platelet-activating factor acetylhydrolase IB ALP 83.07
2d9s_A53 CBL E3 ubiquitin protein ligase; UBA domain, dimer 81.42
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 81.04
2ooa_A52 E3 ubiquitin-protein ligase CBL-B; alpha-helical d 81.0
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
Probab=89.39  E-value=0.45  Score=40.15  Aligned_cols=40  Identities=28%  Similarity=0.329  Sum_probs=36.0

Q ss_pred             ccChhHHHHHHHHh-cCChhhHHHHHHHhcCCHHHHHHHHh
Q 005660          645 VCDENAILKVMEFL-ALPRADAIHLLAQYNGNAETVIQQIF  684 (685)
Q Consensus       645 ~~~~~~i~~~~e~~-~l~r~~ai~ll~~~~g~~e~v~~~~~  684 (685)
                      +-=++.|-.|.|++ .|+.+-...+|..||+|+|.||+.+|
T Consensus        11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LL   51 (71)
T 2di0_A           11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNIL   51 (71)
T ss_dssp             HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence            44578899999987 79999999999999999999999987
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 Back     alignment and structure
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query685
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 92.82
d1uuja_76 Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te 85.41
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 82.08
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.82  E-value=0.15  Score=41.07  Aligned_cols=41  Identities=15%  Similarity=0.278  Sum_probs=35.5

Q ss_pred             cccChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHhC
Q 005660          644 FVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA  685 (685)
Q Consensus       644 ~~~~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~~  685 (685)
                      +..+|.+|..|||. -.+|..|++-|...+||+|.-+.-||.
T Consensus        26 ~~~~ee~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Ll~   66 (73)
T d1vg5a_          26 VAASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMS   66 (73)
T ss_dssp             SCCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             cCcCHHHHHHHHHh-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            45678899999884 469999999999999999999988773
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure