Citrus Sinensis ID: 005676

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680---

MGSHGKTSKSKRENSSSKRSRSERKRYDDSSSELESKSASYNSSDESPERSSRKRQERTKSKRNRHDRESDSSEDDGRRSKSNRRSRDSDSSDDDSNESDHDHRKRKSSRNITEEEIAEYLAKKAQRKAAKVAKKLRAQKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNEPVLEDTQEAEKEAGSFSPELLHGDDDEEAIDPDEDRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR

cccccccccccccccccccccHHHccccccccHHHHcccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEccccccEEEEEEEccccccHHHHHHccccccccccccccccccccEEEEEEEEEEccccc

cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccccEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHcccccHHHHHHHHccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEccccccccccHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHcHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHcccccEcccccccccHHccccccccccEEEEEcccEcccccccccccccccccEEEEEEEEEEcccccccccccEEEEEEccccccEEEEEEEccccHHHHEEEEEcccHHHHcccccEEEccccEEEEEEEEEEEEEcc

mgshgktskskrenssskrsrserkryddssselesksasynssdesperssrkrqertkskrnrhdresdsseddgrrsksnrrsrdsdssdddsnesdhdhrkrkssrniTEEEIAEYLAKKAQRKAAKVAKKLRAQKvsgysndsnpfgdsnlneRFVWRKKierdvsqgvpleefsVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCkhlsgsddldieinepymvfkGLTVKEMEELRDDIKMYLdldratptHVEYWEALMVVCDWELAEARKKDALDRarvrgeqppaellaeerglhSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRleqpsevakfetdldsmpeaeviehddnepvledTQEAEKEagsfspellhgdddeeaidpdeDRALLERKRIAVLEDQQRRIQEAmaskptpsddnFELKAMKAMGAmeegdavfgsgaevnldsqvywwhdkyrprkpkyfnrvhtgyewnkynqthydhdnpppkivqgykfnifypdlvdktkaptytiekdgsngetciirfhagppyedIAFKIVNKEWeyshkkgfkctfeRGILHVYfnfkryryrr

mgshgktskskrenssskrsrserkryddssselesksasynssdesperssrkrqertkskrnrhdresdsseddgrrsksnrrsrdsdssdddsnesdhdhrkrkssrniteeEIAEYLAKKAQRKAAKVAKKLraqkvsgysndsnpfgdsnLNERFVWRKKIerdvsqgvpleefsvkaekkrqrermaeiekvkkrreeralekarheEEMALLARERARAEFQDWEkkeeefhfdqskvrseirlregrlkpiDVLCKHlsgsddldieinEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDAldrarvrgeqppaellaeerglhssIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNEPVLEDTQEAEKEAGsfspellhgdddeeaidPDEDRALLERKRIAVLEDQQRRIQeamaskptpsddnFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYtiekdgsngeTCIIRFHAGPPYEDIAFKIVNKEWEYSHKkgfkctfergilhvyfnfkryryrr

MGSHGktskskrenssskrsrserkryddssselesksasynssDESPERSSRKRQERTKSKRNrhdresdsseddgrrsksnrrsrdsdssdddsnesdhdhrKRKSSRNITEEEIAEYlakkaqrkaakvakklraqkvSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSVKAEKKRQRERMaeiekvkkrreeralekarheeemallareraraeFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNEPVLEDTQEAEKEAGSFSPELLHGdddeeaidpdedRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR

**************************************************************************************************************************************************************RFVWRKKI**********************************************************************************IRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEA**************************************L******ELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKH********************************************************************************************************************AVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRY**

***************************************************************************************************************************************************SNPFGDSNLNERFV************************************************************************************************PIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEA**************************************LD*KTHKELE********************WEAILKRLHIYKAKACLKEIHAKMLR**************************************************************************************************************************S****************YRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR

***************************************************************************************************************ITEEEIAEYLAK***************QKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSV***************KVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNEPVLE***********FSPELLHGDDDEEAIDPDEDRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR

*************************************************************************************************************************AKKAQRKAA***KKLRAQKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDA*******************RGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVA***********************************SFSP********EEAIDPDEDRALLERKRIAVLEDQQRRI***************ELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MGSHGKTSKSKRENSSSKRSRSERKRYDDSSSELESKSASYNSSDESPERSSRKRQERTKSKRNRHDRESDSSEDDGRRSKSNRRSRDSDSSDDDSNESDHDHRKRKSSRNITEEEIAEYLAKKAQRKAAKVAKKLRAQKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSVKAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNEPVLEDTQEAEKEAGSFSPELLHGDDDEEAIDPDEDRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		683	2.2.26 [Sep-21-2011]
Q9CS00		772	Cactin OS=Mus musculus GN	yes	no	0.749	0.663	0.410	1e-116
Q8WUQ7		758	Cactin OS=Homo sapiens GN	yes	no	0.746	0.672	0.400	1e-113
Q9VR99		720	Cactin OS=Drosophila mela	yes	no	0.790	0.75	0.383	1e-110
G5EG14		657	Cactin OS=Caenorhabditis	yes	no	0.770	0.800	0.336	7e-82
B6KG46		703	Cactin OS=Toxoplasma gond	N/A	no	0.830	0.806	0.328	1e-78
F1Q8W0		835	Cactin OS=Danio rerio GN=	yes	no	0.317	0.259	0.522	2e-65
O14342		517	Uncharacterized protein C	yes	no	0.610	0.806	0.283	3e-42

>sp\|Q9CS00\|CATIN_MOUSE Cactin OS=Mus musculus GN=Cactin PE=1 SV=2	Back alignment and function desciption

 Score =  420 bits (1079), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/587 (41%), Positives = 349/587 (59%), Gaps = 75/587 (12%)

Query: 143 GYSNDSNPFGDSNLNERFVWRKKIERDVSQGVP-LEEFSVKAEKKR-QRERMAEIEKVKK 200
           GY+N  NPFGD+NL   F+W K +E+   +G+  LEE  +K   KR Q +   E++KVK+
Sbjct: 215 GYTNTDNPFGDNNLLGTFIWNKALEK---KGISHLEEKELKERNKRIQEDNRLELQKVKQ 271

Query: 201 RREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPID 260
            R ER  EKA  E+E+ LL RE+    F+ WE++E+ FH  Q+K+RS+IR+R+GR KPID
Sbjct: 272 LRLEREREKAMREQELELLQREKEAEHFKTWEEQEDSFHLRQAKLRSKIRIRDGRAKPID 331

Query: 261 VLCKHLSG-SDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALM 319
           +L K++S   DDL +E++EPY    GLTV +ME+L +DI++Y++L++    +V++W  + 
Sbjct: 332 LLAKYISAEDDDLAVEMHEPYTFLNGLTVADMEDLLEDIQVYMELEQG--KNVDFWRDMT 389

Query: 320 VVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEAL 379
            + + E+A+ RK +A  +        P E      G+++S+ +DV+++  GKT+ +L+ +
Sbjct: 390 TITEDEIAKLRKLEASGKG-------PGE---RREGVNASVSSDVQSVFKGKTYNQLQVI 439

Query: 380 QTKIELQMRAGTAKV-VEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRL--EQPSEVA 436
              IE ++RAG   + + YWE++L++L  + A+A L+E H  +LR+ L +L  EQ  E  
Sbjct: 440 FQGIEGKIRAGGPNLDMGYWESLLQQLRAHMARARLRERHQDVLRQKLFKLKQEQGVESE 499

Query: 437 KFETDLDSMPEA------------EVIEHDDNEPV------------------------- 459
                L S P A                 D  EPV                         
Sbjct: 500 PLFPILKSEPSAAHSPEPEERPPSPGTSVDPVEPVEPEEATAPGEAEGEAEGEAVLMEED 559

Query: 460 LEDTQEAEKEAGSFSPELLHGDD---DEEAIDPDEDRALLERKRIAVLEDQQRRIQEAMA 516
           L     A+ +AG +SP LL   +   D   ++P ED   L+R +++      R+  +A  
Sbjct: 560 LIQQSLADYDAGRYSPRLLTAHELPLDAHVLEPHED---LQRLQLS------RQQLQATG 610

Query: 517 SKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHT 576
                ++D F  +A + MG  E   +V     E+ L  + Y W DKYRPRKP++FNRVHT
Sbjct: 611 DASESAEDIFFRRAREGMGQDEAQFSV-----EMPLGGRAYLWADKYRPRKPRFFNRVHT 665

Query: 577 GYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFH 636
           G+EWNKYNQTHYD DNPPPKIVQGYKFNIFYPDL+ K   P Y +E    N +  I+RFH
Sbjct: 666 GFEWNKYNQTHYDFDNPPPKIVQGYKFNIFYPDLIRKRATPEYFLEACADNRDFAILRFH 725

Query: 637 AGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 683
           AGPPYEDIAFKIV++EWEYSH+ GF+C F  GI  ++F+FKRYRYRR
Sbjct: 726 AGPPYEDIAFKIVSREWEYSHRHGFRCQFANGIFQLWFHFKRYRYRR 772

May be involved in pre-mRNA splicing.
Mus musculus (taxid: 10090)

>sp\|Q8WUQ7\|CATIN_HUMAN Cactin OS=Homo sapiens GN=CACTIN PE=1 SV=3	Back alignment and function description

>sp\|Q9VR99\|CATIN_DROME Cactin OS=Drosophila melanogaster GN=cactin PE=1 SV=3	Back alignment and function description

>sp\|G5EG14\|CATIN_CAEEL Cactin OS=Caenorhabditis elegans GN=cacn-1 PE=1 SV=1	Back alignment and function description

>sp\|B6KG46\|CATIN_TOXGO Cactin OS=Toxoplasma gondii GN=CACTIN PE=1 SV=1	Back alignment and function description

>sp\|F1Q8W0\|CATIN_DANRE Cactin OS=Danio rerio GN=cactin PE=2 SV=1	Back alignment and function description

>sp\|O14342\|YB3C_SCHPO Uncharacterized protein C2F12.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2F12.12c PE=4 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		683
357510885		648	Cactin (ISS) [Medicago truncatula] gi\|35	0.847	0.893	0.837	0.0
225441082		654	PREDICTED: uncharacterized protein C19or	0.838	0.876	0.837	0.0
449440173		681	PREDICTED: cactin-like [Cucumis sativus]	0.843	0.845	0.828	0.0
356572506		673	PREDICTED: uncharacterized protein C19or	0.847	0.860	0.835	0.0
449501007		686	PREDICTED: cactin-like [Cucumis sativus]	0.849	0.845	0.822	0.0
356505297		670	PREDICTED: uncharacterized protein C19or	0.846	0.862	0.828	0.0
357440277		658	Cactin (ISS) [Medicago truncatula] gi\|35	0.849	0.881	0.821	0.0
147838150		682	hypothetical protein VITISV_008915 [Viti	0.819	0.821	0.826	0.0
297843202		671	hypothetical protein ARALYDRAFT_333714 [	0.957	0.974	0.71	0.0
15219589		672	uncharacterized protein [Arabidopsis tha	0.834	0.848	0.778	0.0

>gi\|357510885\|ref\|XP_003625731.1\| Cactin (ISS) [Medicago truncatula] gi\|355500746\|gb\|AES81949.1\| Cactin (ISS) [Medicago truncatula]	Back alignment and taxonomy information

 Score = 1028 bits (2658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/596 (83%), Positives = 540/596 (90%), Gaps = 17/596 (2%)

Query: 104 RKRKSSRNITEEEIAEYLAKKAQRKAAKVAKKLRAQKVSGYSNDSNPFGDSNLNERFVWR 163
           RK+KSSR ITEEEI++Y+AKKAQRKA KVAKKL+   VSGYSNDSNPFGD+NLNE+FVWR
Sbjct: 54  RKKKSSRTITEEEISQYMAKKAQRKATKVAKKLKTNTVSGYSNDSNPFGDTNLNEKFVWR 113

Query: 164 KKIERDVSQGVPLEEFSVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARER 223
           KKIERDV+QGV ++ FSVKAEKKRQ ERMAEIEKVKKRREERALEKA+HEEEMALLARER
Sbjct: 114 KKIERDVTQGVSIDSFSVKAEKKRQVERMAEIEKVKKRREERALEKAQHEEEMALLARER 173

Query: 224 ARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVF 283
           ARAEFQDWEKKEEEFHFDQSKVRSEIRLREGR +PIDVL KHL+GSDDLDIEINEPYMVF
Sbjct: 174 ARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVF 233

Query: 284 KGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGE 343
           KGLTVKEM ELRDDIKM+LDLDRATPTHVEYWEAL+VVCDWELAE+RKKDA+DRARVRGE
Sbjct: 234 KGLTVKEMSELRDDIKMHLDLDRATPTHVEYWEALLVVCDWELAESRKKDAIDRARVRGE 293

Query: 344 QPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILK 403
           +PPAELLAE+RGLHSS+E DV++LL GKT  ELEALQ  IE +MR GTAKVVEYWEAILK
Sbjct: 294 EPPAELLAEQRGLHSSVEPDVKDLLHGKTRTELEALQAHIESEMRTGTAKVVEYWEAILK 353

Query: 404 RLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVA-KFETDLDSMPE-----------AEVI 451
            LHIYKAKACLKEIHAKMLRKHLQRLEQP E   K E  LD +PE           A+V+
Sbjct: 354 HLHIYKAKACLKEIHAKMLRKHLQRLEQPLEDEDKPERALDMIPEEAYTEDEEDEDAKVV 413

Query: 452 EHDDN----EPVLEDTQEAEKEAGSFSPELLHGDDDEEAIDPDEDRALLERKRIAVLEDQ 507
              D     EPV E+ QEAE EAGSFSP+LLH D++EEAIDP+ED+A+LERKR+AV+E+Q
Sbjct: 414 RSADESFSPEPVREN-QEAEDEAGSFSPQLLHDDENEEAIDPEEDKAILERKRMAVMEEQ 472

Query: 508 QRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRK 567
           QRRIQEAMASKP PS+DN ELKA KAMGAME+GDAVFGSGAEV+LDSQVYWWHDKYRPRK
Sbjct: 473 QRRIQEAMASKPAPSEDNLELKAFKAMGAMEDGDAVFGSGAEVSLDSQVYWWHDKYRPRK 532

Query: 568 PKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSN 627
           PKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDK KAP YTIEKDGSN
Sbjct: 533 PKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPNYTIEKDGSN 592

Query: 628 GETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 683
           GETCIIRFHAGPPYEDIAF+IVNKEWEYSHKKGFKCTFERGILHVYFNFKR+RYRR
Sbjct: 593 GETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR 648

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225441082\|ref\|XP_002264567.1\| PREDICTED: uncharacterized protein C19orf29 homolog [Vitis vinifera] gi\|297740019\|emb\|CBI30201.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449440173\|ref\|XP_004137859.1\| PREDICTED: cactin-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356572506\|ref\|XP_003554409.1\| PREDICTED: uncharacterized protein C19orf29 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|449501007\|ref\|XP_004161252.1\| PREDICTED: cactin-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356505297\|ref\|XP_003521428.1\| PREDICTED: uncharacterized protein C19orf29-like [Glycine max]	Back alignment and taxonomy information

>gi\|357440277\|ref\|XP_003590416.1\| Cactin (ISS) [Medicago truncatula] gi\|355479464\|gb\|AES60667.1\| Cactin (ISS) [Medicago truncatula]	Back alignment and taxonomy information

>gi\|147838150\|emb\|CAN74141.1\| hypothetical protein VITISV_008915 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297843202\|ref\|XP_002889482.1\| hypothetical protein ARALYDRAFT_333714 [Arabidopsis lyrata subsp. lyrata] gi\|297335324\|gb\|EFH65741.1\| hypothetical protein ARALYDRAFT_333714 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15219589\|ref\|NP_171887.1\| uncharacterized protein [Arabidopsis thaliana] gi\|4204304\|gb\|AAD10685.1\| Hypothetical protein [Arabidopsis thaliana] gi\|332189511\|gb\|AEE27632.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		683
UNIPROTKB\|F1MB35		763	C7H19orf29 "Uncharacterized pr	0.349	0.313	0.494	2.2e-103
UNIPROTKB\|F1PZX0		752	CACTIN "Uncharacterized protei	0.332	0.301	0.510	7.4e-103
UNIPROTKB\|Q8WUQ7		758	CACTIN "Cactin" [Homo sapiens	0.323	0.291	0.510	2e-102
MGI\|MGI:1917562		772	Cactin "cactin, spliceosome C	0.346	0.306	0.472	3.2e-102
ZFIN\|ZDB-GENE-060503-322		530	cactin "cactin" [Danio rerio (	0.348	0.449	0.488	2e-100
DICTYBASE\|DDB_G0279317		727	DDB_G0279317 "unknown" [Dictyo	0.197	0.185	0.698	3.4e-95
RGD\|1563634		764	Cactin "cactin, spliceosome C	0.767	0.685	0.367	1.1e-85
FB\|FBgn0031114		720	cactin "cactin" [Drosophila me	0.770	0.730	0.350	4.4e-84
WB\|WBGene00012230		657	cacn-1 [Caenorhabditis elegans	0.240	0.249	0.577	8.6e-71
UNIPROTKB\|G5EG14		657	cacn-1 "Cactin" [Caenorhabditi	0.240	0.249	0.577	8.6e-71

UNIPROTKB\|F1MB35 C7H19orf29 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

 Score = 594 (214.2 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
 Identities = 127/257 (49%), Positives = 160/257 (62%)

Query:   432 PSEVAKFETDLDSMPEAEVIEHDDNEPVL--EDT-QEA--EKEAGSFSPELLHGXXXXXX 486
             PSE    E + +    AE     D E VL  ED  Q++  + +AG +SP LL        
Sbjct:   520 PSEGGPAEPEAEGATPAE--GEADGEAVLMEEDLIQQSLDDYDAGKYSPRLLTAHELPLD 577

Query:   487 XXXXXXRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGS 546
                      L+R +   L  QQ ++    AS+   ++D F  +A + MG   + +A F  
Sbjct:   578 AHVLEPDEDLQRLQ---LSRQQLQVT-GDASES--AEDIFFRRAKEGMG---QDEAQFS- 627

Query:   547 GAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIF 606
               E+ L  + Y W DKYRPRKP++FNRVHTG+EWNKYNQTHYD DNPPPKIVQGYKFNIF
Sbjct:   628 -VEMPLTGKAYLWADKYRPRKPRFFNRVHTGFEWNKYNQTHYDFDNPPPKIVQGYKFNIF 686

Query:   607 YPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFE 666
             YPDL+DK   P Y +E    N +   +RFHAGPPYEDIAFKIVN+EWEYSH+ GF+C F 
Sbjct:   687 YPDLIDKRSTPEYFLEACADNKDFATLRFHAGPPYEDIAFKIVNREWEYSHRHGFRCQFA 746

Query:   667 RGILHVYFNFKRYRYRR 683
              GI  ++F+FKRYRYRR
Sbjct:   747 NGIFQLWFHFKRYRYRR 763

GO:0071356 "cellular response to tumor necrosis factor" evidence=IEA

GO:0071347 "cellular response to interleukin-1" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0060339 "negative regulation of type I interferon-mediated signaling pathway" evidence=IEA

GO:0034122 "negative regulation of toll-like receptor signaling pathway" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0032717 "negative regulation of interleukin-8 production" evidence=IEA

GO:0032688 "negative regulation of interferon-beta production" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031665 "negative regulation of lipopolysaccharide-mediated signaling pathway" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

UNIPROTKB\|F1PZX0 CACTIN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8WUQ7 CACTIN "Cactin" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1917562 Cactin "cactin, spliceosome C complex subunit" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060503-322 cactin "cactin" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0279317 DDB_G0279317 "unknown" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

RGD\|1563634 Cactin "cactin, spliceosome C complex subunit" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

FB\|FBgn0031114 cactin "cactin" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00012230 cacn-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|G5EG14 cacn-1 "Cactin" [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00000554001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (564 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		683
pfam09732		125	pfam09732, CactinC_cactus, Cactus-binding C-termin	9e-89
smart01050		129	smart01050, CactinC_cactus, Cactus-binding C-termi	1e-73
pfam10312		190	pfam10312, Cactin_mid, Conserved mid region of cac	3e-63
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	7e-05
PRK12678		672	PRK12678, PRK12678, transcription termination fact	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	7e-04
PRK12678		672	PRK12678, PRK12678, transcription termination fact	0.002
TIGR00844		810	TIGR00844, c_cpa1, na(+)/h(+) antiporter	0.003
PRK12678		672	PRK12678, PRK12678, transcription termination fact	0.004
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004

>gnl\|CDD\|192352 pfam09732, CactinC_cactus, Cactus-binding C-terminus of cactin protein	Back alignment and domain information

 Score =  272 bits (697), Expect = 9e-89
 Identities = 91/125 (72%), Positives = 107/125 (85%)

Query: 559 WHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPT 618
           W DKYRPRKP+YFNRV TG++WNKYNQTHYD DNPPPK VQGYKFNIFYPDL+DK KAP 
Sbjct: 1   WSDKYRPRKPRYFNRVKTGFDWNKYNQTHYDSDNPPPKTVQGYKFNIFYPDLIDKGKAPR 60

Query: 619 YTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKR 678
           Y IE      +TC++RFHAGPPYEDIAF+IVNKEW+YS K+GF+ +F+ G+L +YFNFK+
Sbjct: 61  YRIEPCEDPDDTCLLRFHAGPPYEDIAFRIVNKEWDYSRKRGFRSSFDNGVLQLYFNFKK 120

Query: 679 YRYRR 683
            RYRR
Sbjct: 121 LRYRR 125

CactinC_cactus is the C-terminal 200 residues of the cactin protein which are necessary for the association of cactin with IkappaB-cactus as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo. Most members of the family also have a Cactin_mid domain pfam10312 further upstream. Length = 125

>gnl\|CDD\|214996 smart01050, CactinC_cactus, Cactus-binding C-terminus of cactin protein	Back alignment and domain information

>gnl\|CDD\|220686 pfam10312, Cactin_mid, Conserved mid region of cactin	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|233148 TIGR00844, c_cpa1, na(+)/h(+) antiporter	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		683
KOG2370		623	consensus Cactin [Signal transduction mechanisms]	100.0
PF09732		125	CactinC_cactus: Cactus-binding C-terminus of cacti	100.0
PF10312		191	Cactin_mid: Conserved mid region of cactin; InterP	100.0
KOG2370		623	consensus Cactin [Signal transduction mechanisms]	97.71
KOG0227		222	consensus Splicing factor 3a, subunit 2 [RNA proce	96.16
TIGR01642		509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	95.85
COG5246		222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	95.8
KOG4676		479	consensus Splicing factor, arginine/serine-rich [R	95.56
KOG2888		453	consensus Putative RNA binding protein [General fu	95.05
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	93.84
TIGR01642		509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	92.58
TIGR01622		457	SF-CC1 splicing factor, CC1-like family. A homolog	92.39
KOG1847		878	consensus mRNA splicing factor [RNA processing and	90.37
PF10312		191	Cactin_mid: Conserved mid region of cactin; InterP	87.84
KOG2888		453	consensus Putative RNA binding protein [General fu	86.69
KOG0147		549	consensus Transcriptional coactivator CAPER (RRM s	86.67
KOG3263		196	consensus Nucleic acid binding protein [General fu	84.37
KOG1847		878	consensus mRNA splicing factor [RNA processing and	83.05

>KOG2370 consensus Cactin [Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=1.2e-183  Score=1450.07  Aligned_cols=558  Identities=51%  Similarity=0.893  Sum_probs=489.8

Q ss_pred             hhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCcccccchhhhhhhcCCChhhhhH
Q 005676          102 DHRKRKSSRNITEEEIAEYLAKKAQRKAAKVAKKLRAQKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSV  181 (683)
Q Consensus       102 ~~~~~~~~~~~~ee~~~~~~~kk~~k~a~~~~~~l~~~~~~gYTn~dNPFGD~nL~e~FVW~KK~Eke~~~gls~~e~~~  181 (683)
                      ..+..++...++||+.+++|.||++|+|.+.+++++++++.||||++|||||+|||+||||+||+|+++..|+|+.++++
T Consensus        39 r~Kee~k~~e~~EEKrarrm~kK~~K~a~R~~~~~~d~~~~~YsN~~npF~DSnLT~tFvw~kklere~~rgls~~ef~~  118 (623)
T KOG2370|consen   39 RSKEESKSKEYSEEKRARRMSKKAQKKALRAAKKLKDQSVSGYSNDSNPFGDSNLTRTFVWGKKLEREGSRGLSPREFRV  118 (623)
T ss_pred             hhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhhcccccccCccCCCCCcccccchhheeccchhhhhcccCCChhhccH
Confidence            33566777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhhhHhhhhccCCCCchh
Q 005676          182 KAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARER-ARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPID  260 (683)
Q Consensus       182 k~~~~r~~e~~~EiEkvKkRReeRE~Ek~~~Eee~~~l~Rer-e~~~~~eW~~kEd~FhL~Qak~RS~IRIregRAKPID  260 (683)
                      .....|+.+|+.|+++||++|++|+.|++++|+++.|+||.+ ++++|.+|..+|  |||+|+|+||.|||++|||||||
T Consensus       119 ~~~qrr~renl~evekvkk~reer~~eka~~Ede~mmlqrar~aa~qf~d~~~ke--Fh~dq~KlrseIrl~~Grak~id  196 (623)
T KOG2370|consen  119 SNQQRRARENLPEVEKVKKRREERREEKAMQEDEFMMLQRARRAAIQFKDWRSKE--FHFDQDKLRSEIRLRPGRAKPID  196 (623)
T ss_pred             hhHHHHHHhcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhccccccc--chhhhHhhhheeeecCCccchhh
Confidence            888888999999999999999999999999999999999999 999999999999  99999999999999999999999


Q ss_pred             HHhhhccCCCCCcccccchhhhhccCCHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHhHHHHHHHHHhhHHHHhhh
Q 005676          261 VLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARV  340 (683)
Q Consensus       261 ~Lak~l~~~d~~die~~ePy~i~~GLt~~dLeeL~~DIk~yl~Le~~~~~n~~fW~~m~vic~deL~~~rk~e~~~~~~~  340 (683)
                      +|++||.+.+.++++|++||.||+||+++|||+|..||++|++||+ ++++++||.+|++||+|+|+..+  ++..    
T Consensus       197 ll~~~~dfgdeldmel~eP~~vlkg~~vedlEel~~dIk~y~ele~-~~kr~tyW~~v~~iv~delq~~~--~aqn----  269 (623)
T KOG2370|consen  197 LLKNYIDFGDELDMELSEPYSVLKGLKVEDLEELSRDIKDYQELET-NQKRLTYWKDVIMIVNDELQHNK--VAQN----  269 (623)
T ss_pred             HHHhhhcccchhhhhccChHHHHccCCHhHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHH--hhhh----
Confidence            9999999999999999999999999999999999999999999998 68999999999999999998762  2211    


Q ss_pred             cCCCCchhhhhhhhccchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005676          341 RGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAK  420 (683)
Q Consensus       341 ~G~~~~~~~~~~~~gi~~sV~~DI~~il~gKS~eELeeLE~qI~~KL~Sge~iDVeYWE~LLk~L~v~kAka~L~~~h~~  420 (683)
                                .++.+||++|..||..||.|||++||++|+.||++||+||.++|++||+.||++|++|||+|+|+++|+.
T Consensus       270 ----------sRgd~~haave~dv~~il~~Ks~~qL~eLe~qieaklrsns~~d~~YWedll~qLk~ykAra~Lke~h~e  339 (623)
T KOG2370|consen  270 ----------SRGDKLHAAVEVDVRKILAGKSFEQLEELEAQIEAKLRSNSPLDTDYWEDLLNQLKSYKARARLKETHNE  339 (623)
T ss_pred             ----------ccccceehhhhhhHHHHhCCcCHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1345699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccchhcccc---ccCCC--------------chh-hccccCCCCCcccc---hhHHhhhcCCC--CCCC
Q 005676          421 MLRKHLQRLEQPSEVAKFET---DLDSM--------------PEA-EVIEHDDNEPVLED---TQEAEKEAGSF--SPEL  477 (683)
Q Consensus       421 ~l~~~l~~l~~~q~~~~~~~---~~~~~--------------~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~--sp~~  477 (683)
                      +|+.+|..|++.+.++++..   ++...              ++. .......+.|..++   ...+.+.+|+|  ||.+
T Consensus       340 ~Lr~~l~~Lk~e~~~e~~qevapqlkeemed~eee~~~~~~Dpel~e~e~a~~~r~l~~e~~d~~rel~~~gny~~S~~y  419 (623)
T KOG2370|consen  340 ELRIRLNKLKNEEWDEAFQEVAPQLKEEMEDREEELYIVPIDPELIEREQAIPRRPLPEELADYERELYDAGNYVKSPTY  419 (623)
T ss_pred             HHHHHHHHhhhhhhhhhhhhhChhhhhhhhcchhhcccCCCCCCccccccccCCCCCchHHHHHHHHHHHccccccCccc
Confidence            99999999998887664431   11100              000 11112222333321   13457889999  9999


Q ss_pred             cCCCCCCcCCCh-hHHHH-HHHHHHHHHHHHHHH-HHHHhhhCCCCCCChHHHHHHHHHhcccccccccccCccccccCC
Q 005676          478 LHGDDDEEAIDP-DEDRA-LLERKRIAVLEDQQR-RIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDS  554 (683)
Q Consensus       478 ~~~~~~~~~i~~-~~d~~-~l~~~r~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~a~~~m~~~E~~F~~~~Ev~l~~  554 (683)
                      |+.++.+..++| +.+.. +|......+..++.. ++-..+.+.++|.  .+++.|+ +..||+.++++|+  +|++|++
T Consensus       420 i~~~~ptqa~dp~~p~~e~Ll~e~e~~~~~tqr~~R~~~~~ds~~aPq--e~em~a~-a~eGMq~~eaifg--aE~~Lda  494 (623)
T KOG2370|consen  420 IPESDPTQAQDPTEPKNENLLNEDEDSIANTQRLERLYLQSDSAEAPQ--ELEMLAD-AVEGMQTDEAIFG--AEVNLDA  494 (623)
T ss_pred             ccCCCcccccCCCCcchhhhhhhhHHHHHHHHHHHHHhhcCCCcCCcH--HHHHHHH-HHhcccccchhcc--chhcccc
Confidence            998777676666 33333 444445555444332 3333444444555  4555554 4456999999998  5999999


Q ss_pred             ccccccccCCCCCCcccccccccccccccccccCCCCCCCCccccceeEEeeccccCCCCCCCcEEEEeCCCCCCeEEEE
Q 005676          555 QVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIR  634 (683)
Q Consensus       555 ~~y~W~dKYRPRKPrYFNRVhTGyEWNKYNQTHYD~DNPPPKiVQGYKFNIFYPDLIDKtkaPty~ie~~~~~~dtciIR  634 (683)
                      ++|||+||||||||+||||||||||||||||||||+|||||||||||||||||||||||++||||+|++|.+++||||||
T Consensus       495 ~~~lw~DkyrprKP~YfNRVhtGfeWNkYNQtHyd~dnPPPKiVQGYkFNIFYPDLidk~~aP~y~ie~~~d~~d~ciIR  574 (623)
T KOG2370|consen  495 EVYLWHDKYRPRKPHYFNRVHTGFEWNKYNQTHYDEDNPPPKIVQGYKFNIFYPDLIDKGRAPTYRIERCRDKNDFCIIR  574 (623)
T ss_pred             hhhhhccCcCcCCcchhhhhccccccccccccccccCCCCchhhcceeecccchhhhccccCCeeeeeecCCCCceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EecCCCCcceeeeeecccccccCCCccccccccceeEEEEeeccccccC
Q 005676          635 FHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR  683 (683)
Q Consensus       635 F~AGPPYEDIAFrIVnrEWeyS~KrGFr~~FdrGILqL~FnFKr~rYRR  683 (683)
                      ||||||||||||+|||||||||||+||||+|+||||||||+||||||||
T Consensus       575 F~aGpPYeDIAFkIVnkeWeyshKrGfKcqF~ngvlqL~F~FKk~ryRR  623 (623)
T KOG2370|consen  575 FHAGPPYEDIAFKIVNKEWEYSHKRGFKCQFDNGVLQLWFRFKKYRYRR  623 (623)
T ss_pred             eccCCcchhhhhhhhcchhhhhhhcCccceeeCCeeeeeehhhhhhccC
Confidence            9999999999999999999999999999999999999999999999998

>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex	Back alignment and domain information

>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins	Back alignment and domain information

>KOG2370 consensus Cactin [Signal transduction mechanisms]	Back alignment and domain information

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]	Back alignment and domain information

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]	Back alignment and domain information

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]	Back alignment and domain information

>KOG2888 consensus Putative RNA binding protein [General function prediction only]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>TIGR01622 SF-CC1 splicing factor, CC1-like family	Back alignment and domain information

>KOG1847 consensus mRNA splicing factor [RNA processing and modification]	Back alignment and domain information

>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins	Back alignment and domain information

>KOG2888 consensus Putative RNA binding protein [General function prediction only]	Back alignment and domain information

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]	Back alignment and domain information

>KOG3263 consensus Nucleic acid binding protein [General function prediction only]	Back alignment and domain information

>KOG1847 consensus mRNA splicing factor [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		683
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	3e-06
4dgw_C		231	PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 79.1 bits (194), Expect = 2e-15
 Identities = 86/665 (12%), Positives = 185/665 (27%), Gaps = 218/665 (32%)

Query: 93  DDDSNESDHDHRK------------------RKSSRNI-TEEEIAEYL-AKKAQRKAAKV 132
           D ++ E  + ++                   +   ++I ++EEI   + +K A     ++
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 133 AKKLRAQKVSGYSNDSNPFGDSNL--NERFVWRKKIERDVSQGVPLEEFSVKAEK----- 185
              L +++          F +  L  N +F+            +    +  + ++     
Sbjct: 68  FWTLLSKQEEMVQK----FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 186 ----KRQRERMAEIEKVKKRREERALEKARHEEEMAL----------LARERARAEFQDW 231
               K    R   ++   K R+  AL + R  + + +          +A +   +     
Sbjct: 124 QVFAKYNVSR---LQPYLKLRQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCLSY---- 174

Query: 232 EKKEEEFHF-----DQSKVRSEIRLREGRLKPIDVLCKHL--SGSDDLDIEINEPYMVFK 284
            K + +  F     +     S     E  L+ +  L   +  + +   D   N       
Sbjct: 175 -KVQCKMDFKIFWLNLKNCNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKL---- 225

Query: 285 GLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMV---VCDWELAEARKKDALD-RARV 340
                 +  ++ +++  L           Y   L+V   V + +       +A +   ++
Sbjct: 226 -----RIHSIQAELRRLL-------KSKPYENCLLVLLNVQNAKAW-----NAFNLSCKI 268

Query: 341 ----RGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVE 396
               R +Q   + L+     H S++    +     T  E+++L  K  L  R        
Sbjct: 269 LLTTRFKQV-TDFLSAATTTHISLD----HHSMTLTPDEVKSLLLKY-LDCRPQD----- 317

Query: 397 YWEAILKRLHIYKAKACLKEIH-------AKMLRKHLQRLEQPSEVAKFETDLDSMPEAE 449
                L R      +      +       A+ +R  L   +                   
Sbjct: 318 -----LPR------EVL--TTNPRRLSIIAESIRDGLATWDN------------------ 346

Query: 450 VIEHDDNEPVLEDTQEAEKEAGSFSPELLHGDDDEEAIDPDEDRALLERKRIAVLEDQQR 509
             +H + +  L    E+     S              ++P E R + +R  ++V      
Sbjct: 347 -WKHVNCDK-LTTIIES-----SL-----------NVLEPAEYRKMFDR--LSVF----- 381

Query: 510 RIQEAMASKPTPSDDNFELKAMKAM-GAMEEGDA-------VFGSGAEVNLDSQVYWWHD 561
                      P   +     +  +   + + D           S  E            
Sbjct: 382 -----------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 562 KYRPRKPKYFNR--VHTGYEWNKYNQT-HYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPT 618
            Y   K K  N   +H     + YN    +D D+  P  +  Y    FY  +        
Sbjct: 431 IYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQY----FYSHIG------- 478

Query: 619 YTIEKDGSNGETCIIRFHAGPPYEDIAF---KIVNKEWEYSHKKGFKCTFERGILHVYFN 675
           + ++         + R      + D  F   KI +                  IL+    
Sbjct: 479 HHLKNIEHPERMTLFR----MVFLDFRFLEQKIRH--------DSTAWNASGSILNTLQQ 526

Query: 676 FKRYR 680
            K Y+
Sbjct: 527 LKFYK 531

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 231	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		683
4dgw_C		231	PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A	97.31
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	88.9

>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=97.31  E-value=0.00044  Score=68.36  Aligned_cols=80  Identities=20%  Similarity=0.270  Sum_probs=56.6

Q ss_pred             ccceeEEeeccccC---------CCCCCCcEEEEeCC-----CCCCeEEEEEecCCCCcceeeeeecccccccCCC----
Q 005676          598 VQGYKFNIFYPDLV---------DKTKAPTYTIEKDG-----SNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKK----  659 (683)
Q Consensus       598 VQGYKFNIFYPDLI---------DKtkaPty~ie~~~-----~~~dtciIRF~AGPPYEDIAFrIVnrEWeyS~Kr----  659 (683)
                      -+|.=|.|-||+=|         +....|.+.|...=     ...++--|.| |.-|||=|||+|-|+|=+.+.+.    
T Consensus       115 Q~GLLFQVdYPEeIk~~~~~~~~~egi~PrhRIMSAyEQrVE~PKd~QYLVI-AAEPYETIAFKIPNrEIDk~e~~~~~~  193 (231)
T 4dgw_C          115 SVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVI-AYEPFENIAIELPPNEILFSENNDMDN  193 (231)
T ss_dssp             BCCEEEEEECCCSSSTTSCCSCSSTTCCCEEEEEETTCCSSCCCCCCEEEEE-ECSSSCCBCCEECSSCSSCCSCCSCCC
T ss_pred             CeeEEEEEECChhhhhcccccccCCCCCcCEEEECHHHhcccCCCCCEEEEE-EeCCCCCceeEcCChhhcccccccccc
Confidence            58999999999854         45678999998651     1234555544 88999999999999999987742    


Q ss_pred             --------c-cccccc--cceeEEEEeecc
Q 005676          660 --------G-FKCTFE--RGILHVYFNFKR  678 (683)
Q Consensus       660 --------G-Fr~~Fd--rGILqL~FnFKr  678 (683)
                              | |-|.+|  ...|.|-|.||.
T Consensus       194 ~~~svDElgKfwTyWD~DsK~FyLQffFK~  223 (231)
T 4dgw_C          194 NNDGVDELNKKCTFWDAISKLYYVQFFFKQ  223 (231)
T ss_dssp             CCCSSCHHHHHTEEEETTTTEEEEC-----
T ss_pred             ccccccccCCEEEEecCCCCEEEEEEEEee
Confidence                    3 344445  689999999985

PyMOL of 4dgw

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00