Citrus Sinensis ID: 005687

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680---
METNTSKTLDDETDLVFAREIVDEKTLDPSWSSPETLHDHLHPSNHPLTLTDLDKDQNNDDDDDYEEIYRDTRPISSSYGRYNWGSSLLSRPVEKHWPIQIKPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQGTEWVSSLLEAESIGMNADISNSSPKSVLDNVENDYTSRSGVANAESCKANEPSASAGDSSTKFSCQLRSIDLEVNETRDTVKGMSACFTLASCRNAAEHETRDNTPMIDDASRPLSASDFYGVFCNEKVNKLTSLEEDNCNPGVEKVKIVDGFHPLTPPRSPSPDIHSGKPRETYQVPREHLKLESKGACKTQLERNGKDLERQEAVRCIKKTMTGERYMKLMAAVNDVSLNRKRRLKSSPCKRFSPTRARRKHNHGSVMRRVAI
ccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEEEEEEEcccccccccccccEEEEccccccccHHHHHHHcccccEEccccccccccccccccccEEEEEccccccEEEEEEcccccccccccccccEEEccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEcccccEEEEccccEEEEcHHHHcccccEEEEEEEEccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccHHHHcccccccccccccc
cccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccHHHHHcccHHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHcccccccEEEEEEccccccccccccEEEEcccccccHHHHHHHHccHHHcccccccccHHHHHHccccccEEEEcccccEEEEEEEEEccccccccEEEEEcccccEccccccccccccccccEEEEEEEEEEEccccccccEEEEEEEcccccEEEEccccEEEccHHHHHcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
metntsktlddetDLVFAREIvdektldpswsspetlhdhlhpsnhpltltdldkdqnndddddyeeiyrdtrpisssygrynwgssllsrpvekhwpiqikptgvgaglenlgntCFINAILQCFTHTLPLVQalrsfdhprpcdgategfCVICALRDHIELSLassgkvlsprklvdnLNYISSFFQRYQQEDAHEFLQCLLDRLesccldsktkdeslssqgdniVQRVFGGClisklqccncgscsdtyeplIDLSLEIEDVGSLGSALESFtklekiedpetkftcekcKEQVSVEKQLMLDKVPSVAAFHLKrfktdgsyvvkidkhvefpleldlkpytsggqnsdvELKYHLYAIVEhmgssptcghyfsyirsspdtwhrlndsrvtRVEEEFVLSQDAYILFYAKQGTEWVSSLLEAESigmnadisnsspksvldnvendytsrsgvanaesckanepsasagdsstkfscqlrsidlevnetrdtvkgmSACFTLASCrnaaehetrdntpmiddasrplsasdfygVFCNEKVNKLtsleedncnpgvekvkivdgfhpltpprspspdihsgkpretyqvprehlkleskgACKTQLERNGKDLERQEAVRCIKKTMTGERYMKLMAAVNDVSlnrkrrlksspckrfsptrarrkhnhgsvmrrvai
metntsktlddetdlVFAREIVDEKTLDPSWSSPETLHDHLHPSNHPltltdldkdqnndDDDDyeeiyrdtrpisssygryNWGSSLLSRPVEKHWPIQIKPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLassgkvlsprkLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTkdeslssqgdnIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVGSLGSALESftklekiedpetkftceKCKEQVSVEKQLMLDKVPSVAAFHLkrfktdgsyvVKIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQGTEWVSSLLEAESIGMnadisnsspksVLDNVENDYTSRsgvanaesckanepsasagdsstkfsCQLRSIDlevnetrdtvKGMSACFTLASCRNaaehetrdntpmiddasrplsASDFYGVFCNEKVNKLTSLEEDNCNPGVEKVKIVDGFHPLTpprspspdihsgkPRETYQVPrehlkleskgacktqlerngkdlerqeavrcikktmtgeryMKLMAAVNdvslnrkrrlksspckrfsptrarrkhnhgsvmrrvai
METNTSKTLDDETDLVFAREIVDEKTLDPSWSSPETLHDHLHPSNHPltltdldkdqnndddddYEEIYRDTRPISSSYGRYNWGSSLLSRPVEKHWPIQIKPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQGTEWVSSLLEAESIGMNADISNSSPKSVLDNVENDYTSRSGVANAESCKANEPSASAGDSSTKFSCQLRSIDLEVNETRDTVKGMSACFTLASCRNAAEHETRDNTPMIDDASRPLSASDFYGVFCNEKVNKLTSLEEDNCNPGVEKVKIVDGFHPLTPPRSPSPDIHSGKPRETYQVPREHLKLESKGACKTQLERNGKDLERQEAVRCIKKTMTGERYMKLMAAVNDVSLNRKRRLKSSPCKRFSPTRARRKHNHGSVMRRVAI
***************VFAR*******************************************************ISSSYGRYNWGSSLLSRPVEKHWPIQIKPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLD************DNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQGTEWVSSLLEA********************************************************LRSIDLEVNETRDTVKGMSACFTLASCR***********************SDFYGVFCNEKVNKLTSLEEDNCNPGVEKVKIVDGF*****************************************************VRCIKKTMTGERYMKLMAAVN**************************************
*********************************************************************************************************VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLE*******************IVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQ**************************************************************************************************************************************************************************************************************************************************************************
**********DETDLVFAREIVDEKTLDPSWSSPETLHDHLHPSNHPLTLTDLDKDQNNDDDDDYEEIYRDTRPISSSYGRYNWGSSLLSRPVEKHWPIQIKPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDS*********QGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQGTEWVSSLLEAESIGMNADISNSSPKSVLDNVENDYTSRSGVA*******************KFSCQLRSIDLEVNETRDTVKGMSACFTLASCRNAAEHETRDNTPMIDDASRPLSASDFYGVFCNEKVNKLTSLEEDNCNPGVEKVKIVDGFHPLTPPRSPSPDIHSGKPRETYQVPREHLKLESKGACKTQLERNGKDLERQEAVRCIKKTMTGERYMKLMAAVNDVSLNRKRRLKSSPCKRF********************
**************************************************************************************SLLSRPVEKHWPIQIKPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQG*************************************************************************************************************************************************************************************************************************************************************************
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METNTSKTLDDETDLVFAREIVDEKTLDPSWSSPETLHDHLHPSNHPLTLTDLDKDQNNDDDDDYEEIYRDTRPISSSYGRYNWGSSLLSRPVEKHWPIQIKPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQGTEWVSSLLEAESIGMNADISNSSPKSVLDNVENDYTSRSGVANAESCKANEPSASAGDSSTKFSCQLRSIDLEVNETRDTVKGMSACFTLASCRNAAEHETRDNTPMIDDASRPLSASDFYGVFCNEKVNKLTSLEEDNCNPGVEKVKIVDGFHPLTPPRSPSPDIHSGKPRETYQVPREHLKLESKGACKTQLERNGKDLERQEAVRCIKKTMTGERYMKLMAAVNDVSLNRKRRLKSSPCKRFSPTRARRKHNHGSVMRRVAI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query683 2.2.26 [Sep-21-2011]
Q9FIQ1732 Ubiquitin carboxyl-termin yes no 0.510 0.476 0.576 1e-114
Q9FPS7695 Ubiquitin carboxyl-termin no no 0.530 0.520 0.545 1e-110
Q9FPS4 859 Ubiquitin carboxyl-termin no no 0.497 0.395 0.393 2e-72
E1B9W9 1333 Ubiquitin carboxyl-termin yes no 0.489 0.250 0.396 7e-65
Q9H9J4 1324 Ubiquitin carboxyl-termin yes no 0.440 0.227 0.408 8e-65
D3ZU96 1325 Ubiquitin carboxyl-termin yes no 0.440 0.227 0.405 2e-64
B2RQC2 1324 Ubiquitin carboxyl-termin yes no 0.440 0.227 0.405 2e-64
Q9P275 1121 Ubiquitin carboxyl-termin no no 0.443 0.270 0.389 6e-62
B1AQJ2 1098 Ubiquitin carboxyl-termin no no 0.443 0.275 0.385 2e-61
Q6R6M4530 Ubiquitin carboxyl-termin no no 0.445 0.573 0.370 4e-55
>sp|Q9FIQ1|UBP21_ARATH Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis thaliana GN=UBP21 PE=2 SV=1 Back     alignment and function desciption
 Score =  413 bits (1062), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/352 (57%), Positives = 249/352 (70%), Gaps = 3/352 (0%)

Query: 97  WPIQIKPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVIC 156
           W  +I+PTGVGAGL N GNTCFI ++LQCFTHT+PL+ +LRSF +  PC+   E FCV+ 
Sbjct: 152 WYPRIEPTGVGAGLYNSGNTCFIASVLQCFTHTVPLIDSLRSFMYGNPCNCGNEKFCVMQ 211

Query: 157 ALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSK 216
           ALRDHIEL+L SSG  ++  +  DNL Y SS F    QEDAHEFLQ  LD+LE CCLD K
Sbjct: 212 ALRDHIELALRSSGYGINIDRFRDNLTYFSSDFMINHQEDAHEFLQSFLDKLERCCLDPK 271

Query: 217 TKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVGSLGSALES 276
            +  S+SSQ  NIV  VFGG L+S L CCNC S S+T+EP +  SLEIEDV +L  ALES
Sbjct: 272 NQLGSVSSQDLNIVDNVFGGGLMSTLCCCNCNSVSNTFEPSLGWSLEIEDVNTLWKALES 331

Query: 277 FTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVE 336
           FT +EK+ED   + TC+ CKE+V+ EKQL  DK+P VA FHLKRF  DG  + KI  H+E
Sbjct: 332 FTCVEKLED---QLTCDNCKEKVTKEKQLRFDKLPPVATFHLKRFTNDGVTMEKIFDHIE 388

Query: 337 FPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRV 396
           FPLELDL P+ S   + +V  +YHLYA VEH+G   T GHY SY+RS+P+TWH  +DS+V
Sbjct: 389 FPLELDLSPFMSSNHDPEVSTRYHLYAFVEHIGIRATFGHYSSYVRSAPETWHNFDDSKV 448

Query: 397 TRVEEEFVLSQDAYILFYAKQGTEWVSSLLEAESIGMNADISNSSPKSVLDN 448
           TR+ EE VLS+ AYILFYA++GT W SS  E       A   + SP SVLDN
Sbjct: 449 TRISEERVLSRPAYILFYAREGTPWFSSTFEQLKTVFEATPLHFSPVSVLDN 500
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q9FPS7|UBP20_ARATH Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabidopsis thaliana GN=UBP20 PE=2 SV=1 Back     alignment and function description
>sp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2 Back     alignment and function description
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42 PE=3 SV=1 Back     alignment and function description
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=3 Back     alignment and function description
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus GN=Usp42 PE=3 SV=1 Back     alignment and function description
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42 PE=2 SV=1 Back     alignment and function description
>sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3 Back     alignment and function description
>sp|B1AQJ2|UBP36_MOUSE Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36 PE=2 SV=1 Back     alignment and function description
>sp|Q6R6M4|U17L2_HUMAN Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo sapiens GN=USP17L2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query683
224138132 835 predicted protein [Populus trichocarpa] 0.812 0.664 0.577 1e-169
224126461 809 predicted protein [Populus trichocarpa] 0.806 0.681 0.551 1e-163
255573501753 conserved hypothetical protein [Ricinus 0.803 0.729 0.535 1e-151
297742094547 unnamed protein product [Vitis vinifera] 0.739 0.923 0.554 1e-144
449462061676 PREDICTED: ubiquitin carboxyl-terminal h 0.802 0.810 0.467 1e-142
449517900621 PREDICTED: ubiquitin carboxyl-terminal h 0.802 0.882 0.467 1e-142
356529718730 PREDICTED: uncharacterized protein LOC10 0.581 0.543 0.566 1e-124
357485233715 Ubiquitin carboxyl-terminal hydrolase [M 0.790 0.755 0.439 1e-115
297791015724 ubiquitin-specific protease 21 [Arabidop 0.549 0.517 0.530 1e-114
11993482737 ubiquitin-specific protease 21 [Arabidop 0.510 0.473 0.576 1e-112
>gi|224138132|ref|XP_002326526.1| predicted protein [Populus trichocarpa] gi|222833848|gb|EEE72325.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 330/571 (57%), Positives = 401/571 (70%), Gaps = 16/571 (2%)

Query: 103 PTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHI 162
           PTGVGA L N GNTC+INAILQCFTHT+PLVQALRS +H  PC   TEGFCV+C LRDHI
Sbjct: 270 PTGVGAALFNKGNTCYINAILQCFTHTVPLVQALRSCNHEMPC--ITEGFCVLCVLRDHI 327

Query: 163 ELSLASSGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESL 222
           ELSL+SSGK+L P KLV+NL  ISS F+RYQQEDAHEFLQCLL+RLE  CLDS   D+S 
Sbjct: 328 ELSLSSSGKILEPLKLVNNLENISSVFRRYQQEDAHEFLQCLLERLERHCLDSSLTDDSA 387

Query: 223 SSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVGSLGSALESFTKLEK 282
           SS   NIV+RVFGG L+SKL+CCNCG CSD YEPLIDLSLEIED  SL SALESFTK+EK
Sbjct: 388 SSHDKNIVERVFGGRLVSKLRCCNCGHCSDKYEPLIDLSLEIEDADSLQSALESFTKVEK 447

Query: 283 IEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELD 342
           IED ETKFTCE CKE+VS EKQLMLD+ PSVAA HLK FK DG+ V KI KHV+FPLELD
Sbjct: 448 IEDSETKFTCESCKEEVSREKQLMLDQAPSVAALHLKIFKIDGTSVEKIGKHVQFPLELD 507

Query: 343 LKPYTSGGQNSD-VELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEE 401
           LKPYT+  ++SD V  KY LYA+V H G S   GHYF YIRSSPDTWH+L+D  V++ +E
Sbjct: 508 LKPYTNDNEDSDEVGFKYQLYAVVVHKGDSLMSGHYFCYIRSSPDTWHKLDDPEVSKEQE 567

Query: 402 EFVLSQDAYILFYAKQGTEWVSSLLEAESIGMNADISNSSPKSVLDNVENDYTSRSGVAN 461
           EFVLSQ AYILFYA++GT W SSL++ + +  +   SN+SPKSVLDNV  + T   GV N
Sbjct: 568 EFVLSQAAYILFYAREGTPWCSSLIKPQELCSDPSNSNTSPKSVLDNVNRECT---GVGN 624

Query: 462 AESCKANEPSASAGDSSTKFSCQLRSIDLEVNETRDTVKGMSACFTLASCRNAAEHETRD 521
            +S + N    +   +ST    + +    E +E+R   KG     + A+  N     +  
Sbjct: 625 NKSSETNVIKDAIEATSTHIPFERK---FEESESRVETKGNFVQISPANRPNFHRIVSIG 681

Query: 522 NTPMIDDASRPLSASDFY-GVFCNEKVNKLTSLEEDNCNPGVEKVKIVDGFHPLTPPRSP 580
            TPM+ D S PL  SD++ GV  +E +    S+EEDNCN G EK++I    H  TP RSP
Sbjct: 682 ETPMV-DVSVPLGVSDYHDGVLHDEMLCFPPSVEEDNCNQGAEKIEINGDLHSPTPHRSP 740

Query: 581 SPDIHSGKPRETYQVPREHLKLESKGACKTQLERNGKDLERQEAVRCIKKTMTGERYMKL 640
           +PD   G P   +++ R+H K E++  CK   ++  KD +  EA+RCIK+  T  R MKL
Sbjct: 741 TPD--KGLPEARHRILRDHQKGENRVNCKRSSKKVTKDSQTAEALRCIKRMPTA-RGMKL 797

Query: 641 MAAVNDVSLNRKRRLKSSPCKRFSPTRARRK 671
           MAA+  +  N K R +SSPCKR SP  +R K
Sbjct: 798 MAAM--LPRNDKIRPRSSPCKRASPPGSRCK 826

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224126461|ref|XP_002329560.1| predicted protein [Populus trichocarpa] gi|222870269|gb|EEF07400.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255573501|ref|XP_002527676.1| conserved hypothetical protein [Ricinus communis] gi|223532981|gb|EEF34747.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297742094|emb|CBI33881.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462061|ref|XP_004148760.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 20-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517900|ref|XP_004165982.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 20-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356529718|ref|XP_003533435.1| PREDICTED: uncharacterized protein LOC100808015 [Glycine max] Back     alignment and taxonomy information
>gi|357485233|ref|XP_003612904.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355514239|gb|AES95862.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297791015|ref|XP_002863392.1| ubiquitin-specific protease 21 [Arabidopsis lyrata subsp. lyrata] gi|297309227|gb|EFH39651.1| ubiquitin-specific protease 21 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|11993482|gb|AAG42759.1|AF302669_1 ubiquitin-specific protease 21 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query683
TAIR|locus:505006491695 UBP20 "ubiquitin-specific prot 0.528 0.519 0.549 6.4e-110
TAIR|locus:2178535732 UBP21 "ubiquitin-specific prot 0.765 0.714 0.435 3.1e-106
TAIR|locus:2174403 859 UBP23 "ubiquitin-specific prot 0.622 0.494 0.355 2.1e-68
UNIPROTKB|Q9H9J4 1324 USP42 "Ubiquitin carboxyl-term 0.440 0.227 0.408 2.8e-62
UNIPROTKB|E1B9W9 1333 USP42 "Ubiquitin carboxyl-term 0.489 0.250 0.396 2e-61
RGD|1305231 1325 Usp42 "ubiquitin specific pept 0.440 0.227 0.405 4.1e-61
MGI|MGI:1924050 1324 Usp42 "ubiquitin specific pept 0.440 0.227 0.405 6.6e-61
UNIPROTKB|E2RHU7 1331 USP42 "Ubiquitin carboxyl-term 0.496 0.254 0.387 3e-60
UNIPROTKB|E1BGW4 1101 USP36 "Ubiquitin carboxyl-term 0.512 0.317 0.370 1.2e-59
ZFIN|ZDB-GENE-030131-5739 1047 usp42 "ubiquitin specific pept 0.440 0.287 0.384 2.1e-59
TAIR|locus:505006491 UBP20 "ubiquitin-specific protease 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1017 (363.1 bits), Expect = 6.4e-110, Sum P(3) = 6.4e-110
 Identities = 205/373 (54%), Positives = 262/373 (70%)

Query:   104 TGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIE 163
             TGVGAGL NLGN+CF+N++ QCFTHT+PL+++L SF +  PC    E FCVI A+R HIE
Sbjct:   172 TGVGAGLWNLGNSCFLNSVFQCFTHTVPLIESLLSFRYEVPCHCGNEFFCVIRAIRYHIE 231

Query:   164 LSLASSGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLS 223
              +L      ++P    DNLNY S  FQRYQQEDAHEFLQ  L++LE C  D +T     S
Sbjct:   232 AALRPERCPIAPYFFFDNLNYFSPDFQRYQQEDAHEFLQAFLEKLEICGSD-RT-----S 285

Query:   224 SQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVGSLGSALESFTKLEKI 283
              +GD   Q VF G LIS L+CCNC   S+TYE  + LSLEIEDV +LGSALESFT++EK+
Sbjct:   286 FRGDITSQDVFSGRLISGLRCCNCDYVSETYEKSVGLSLEIEDVDTLGSALESFTRVEKL 345

Query:   284 EDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDL 343
             ++   + TC+ C E+VS EKQL+LDK+P VA FHLKRFK +G Y+ KI KHV+ PLE+DL
Sbjct:   346 DE---QLTCDNCNEKVSKEKQLLLDKLPLVATFHLKRFKNNGLYMEKIYKHVKIPLEIDL 402

Query:   344 KPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEF 403
             +PY    Q ++V  KYHLYA+VEH G S   GHY SY+RS+P  WH  +DS+VTR++E+ 
Sbjct:   403 QPYMRNIQENEVSTKYHLYALVEHFGYSVAYGHYSSYVRSAPKIWHHFDDSKVTRIDEDM 462

Query:   404 VLSQDAYILFYAKQGTEWVSSLLEAESIGMNADISNSSPKSVLDNVEN-DYTSRSGVANA 462
             VLSQD+YILFYA++GT W SS+ E     + A + NSSPKSVLD+  N +  S     N 
Sbjct:   463 VLSQDSYILFYAREGTRWFSSVYEEMQPLVEASLLNSSPKSVLDSSTNGECLSEISYENG 522

Query:   463 ESCKANEPSASAG 475
             +  KA++P  SAG
Sbjct:   523 D--KASKPCDSAG 533
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
TAIR|locus:2178535 UBP21 "ubiquitin-specific protease 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174403 UBP23 "ubiquitin-specific protease 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9J4 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1B9W9 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1305231 Usp42 "ubiquitin specific peptidase 42" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1924050 Usp42 "ubiquitin specific peptidase 42" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHU7 USP42 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGW4 USP36 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5739 usp42 "ubiquitin specific peptidase 42" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.766
3rd Layer3.4.19.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00290197
hypothetical protein (835 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query683
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-136
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 2e-85
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 4e-71
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 4e-63
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 3e-57
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 3e-55
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 1e-47
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 3e-47
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 2e-36
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 5e-34
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 7e-33
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 7e-31
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 3e-30
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 3e-27
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 1e-26
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 4e-26
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 1e-23
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 7e-21
COG5207749 COG5207, UBP14, Isopeptidase T [Posttranslational 2e-13
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 5e-12
cd02665228 cd02665, Peptidase_C19I, A subfamily of Peptidase 3e-11
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 6e-11
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 9e-11
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 2e-05
cd02672268 cd02672, Peptidase_C19P, A subfamily of Peptidase 7e-05
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  402 bits (1035), Expect = e-136
 Identities = 154/311 (49%), Positives = 204/311 (65%), Gaps = 9/311 (2%)

Query: 107 GAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSL 166
           GAGL+NLGNTCF+N++LQC THT PL   L S +H + C    EGFC++CAL  H+E +L
Sbjct: 1   GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC--NEGFCMMCALEAHVERAL 58

Query: 167 ASSGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLD--SKTKDESLSS 224
           ASSG   +PR    NL  IS  F+  +QEDAHEFL+ LLD ++  CLD   K K    SS
Sbjct: 59  ASSGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSS 118

Query: 225 QGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVGSLGSALESFTKLEKIE 284
           Q   +VQ++FGG L S+++C NC   S+TY+P +DLSL+I+   SL  ALE FTK E+++
Sbjct: 119 QETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLD 178

Query: 285 DPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDLK 344
             E K+ CE+CK++V   KQL + + P+V   HLKRF        KI+K + FP  LDL 
Sbjct: 179 G-ENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGG--KINKQISFPETLDLS 235

Query: 345 PYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFV 404
           PY S  Q +D  LKY LYA++ H G SP  GHY+ Y++SS   W+ ++DS+V+ V  E V
Sbjct: 236 PYMS--QPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETV 293

Query: 405 LSQDAYILFYA 415
           LSQ AYILFY 
Sbjct: 294 LSQKAYILFYI 304

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 683
KOG1865545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 100.0
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 100.0
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.97
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.87
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 99.78
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 98.73
KOG3556724 consensus Familial cylindromatosis protein [Genera 96.82
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 96.47
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 94.19
cd0181374 UBP_N UBP ubiquitin processing protease. The UBP ( 91.1
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 89.29
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-69  Score=586.19  Aligned_cols=310  Identities=46%  Similarity=0.828  Sum_probs=290.9

Q ss_pred             ccCCCCCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHH
Q 005687          100 QIKPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLV  179 (683)
Q Consensus       100 e~~p~~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl  179 (683)
                      .+.+..+++||.|+|||||+|||||||.++|||.+||++..|...|+  ...+|++|+|+.++...+...+.+|.|..|+
T Consensus       101 ~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~--~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~  178 (545)
T KOG1865|consen  101 SDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH--RAKFCMLCTFQAHITRALHNPGHPISPSQIL  178 (545)
T ss_pred             ccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc--ccCeeeehHHHHHHHHHhcCCCCccChHHHH
Confidence            34467889999999999999999999999999999999999999884  6789999999999988888888899999999


Q ss_pred             hhhhhccccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCccccccccee
Q 005687          180 DNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLID  259 (683)
Q Consensus       180 ~~L~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~  259 (683)
                      ..|+.+...|..|.|+||||||+++||.|+..++ ..........+..++|+++|+|.++++++|..|.++++++|+.++
T Consensus       179 s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL-~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~d  257 (545)
T KOG1865|consen  179 SNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL-PGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLD  257 (545)
T ss_pred             HhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc-CCCccCCcccccceehhhhhccchhhceecccCCCcccccccccc
Confidence            9999999999999999999999999999999987 334444566788999999999999999999999999999999999


Q ss_pred             eeeeecccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCceeeeecceeecCc
Q 005687          260 LSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPL  339 (683)
Q Consensus       260 LsL~I~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~  339 (683)
                      |+|+|.+..+|+++|++|++.|.++ |+|+|+|++|++++.|.|+++|.++|+||+||||||+.  ++..||.+.|.||+
T Consensus       258 ltvei~d~~sl~~AL~qFt~~E~L~-gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fPE  334 (545)
T KOG1865|consen  258 LTLEIQDASSLQQALEQFTKPEKLD-GENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFPE  334 (545)
T ss_pred             eEEEeccchhHHHHHHHhhhHHhhC-CccccccchhhhhCcccceeeeecCCceEEEeeehhcc--CcccccccccCCcc
Confidence            9999999999999999999999997 69999999999999999999999999999999999988  56789999999999


Q ss_pred             cccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEeccccccCCCeEEEEEEEc
Q 005687          340 ELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQ  417 (683)
Q Consensus       340 ~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R~  417 (683)
                      .|||.+||..+.  ..+.+|.|||||+|.|.+..+|||+||||..+|.||+|||+.|+.++.+.|+++.||||||.|.
T Consensus       335 ~LDl~PyMS~~~--e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~  410 (545)
T KOG1865|consen  335 TLDLQPYMSQPN--EGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK  410 (545)
T ss_pred             cccccccccCCC--CCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccceecccceEEEEEee
Confidence            999999998543  3578999999999999999999999999999999999999999999999999999999999997

>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01813 UBP_N UBP ubiquitin processing protease Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query683
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 3e-36
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 2e-35
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 2e-35
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 3e-35
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 4e-35
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 7e-35
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 3e-34
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 4e-31
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 4e-31
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 6e-31
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 1e-26
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 4e-25
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 3e-24
2f1z_A522 Crystal Structure Of Hausp Length = 522 4e-16
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 1e-15
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 4e-15
2ayn_A404 Structure Of Usp14, A Proteasome-Associated Deubiqu 1e-11
1vjv_A415 Crystal Structure Of Ubiquitin Carboxyl-terminal Hy 3e-04
3ihp_A854 Covalent Ubiquitin-Usp5 Complex Length = 854 3e-04
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 172/335 (51%), Gaps = 32/335 (9%)
Query: 108 AGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSL- 166
           +GL N+GNTCF+++ILQC  H    ++   S  H   C   +   C  CAL D I   L 
Sbjct: 142 SGLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCAL-DKIVHELY 200
Query: 167 -------ASSGKVLSPRK-----LVDNLNYISSFFQRYQQEDAHEFLQCLLDRL-ESCCL 213
                  ASS    + R+     L+     I+     Y Q+DAHEF Q +++++ +S  L
Sbjct: 201 GALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVL 260
Query: 214 D---SKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDT-YEPLIDLSLEIEDVGS 269
           D   +K    + + Q + IV  VF G L S + C  C + S T  +P +DLSL+I+D   
Sbjct: 261 DLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKK 320
Query: 270 LGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFK--TDGSY 327
           L   L+SF K E+++D    + C +C       KQL + K+PSV    LKRF+   +GS 
Sbjct: 321 LYECLDSFHKKEQLKD--FNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSN 378
Query: 328 VVKIDKHVEFPLELDLKPYTSG------GQNSDV-ELKYHLYAIVEHMGSSPTCGHYFSY 380
             K+D  +EFP  L++K Y S        +N  V ++ Y L  IV H G+    GHY ++
Sbjct: 379 R-KLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNE-GHYIAF 436
Query: 381 IRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYA 415
            + S   W + NDS V+ + +E VL + AY+LFY 
Sbjct: 437 CKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYT 471
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 Back     alignment and structure
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415 Back     alignment and structure
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query683
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 1e-108
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-101
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 2e-97
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 9e-90
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 4e-83
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 4e-83
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 9e-80
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 7e-78
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 3e-34
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 5e-13
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 1e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
 Score =  336 bits (863), Expect = e-108
 Identities = 105/353 (29%), Positives = 168/353 (47%), Gaps = 29/353 (8%)

Query: 90  SRPVEKHWPIQIKPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGAT 149
               +   P   +  G+ +GL N+G+TCF+++ILQC  H    ++   S  H   C   +
Sbjct: 125 DVCTKTMVPSMERRDGL-SGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRS 183

Query: 150 EGFCVICALRDHIEL------------SLASSGKVLSPRKLVDNLNYISSFFQRYQQEDA 197
              C  CAL   +              S  S+ +      L+     I+     Y Q+DA
Sbjct: 184 PDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDA 243

Query: 198 HEFLQCLLDRLESCCL----DSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSD- 252
           HEF Q +++++    +    ++K    + + Q + IV  VF G L S + C  C + S  
Sbjct: 244 HEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKT 303

Query: 253 TYEPLIDLSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPS 312
           T +P +DLSL+I+D   L   L+SF K E+++D    + C +C       KQL + K+PS
Sbjct: 304 TIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKD--FNYHCGECNSTQDAIKQLGIHKLPS 361

Query: 313 VAAFHLKRFKTDGSYV-VKIDKHVEFPLELDLKPYTSGGQNS-------DVELKYHLYAI 364
           V    LKRF+   +    K+D  +EFP  L++K Y S  +           ++ Y L  I
Sbjct: 362 VLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGI 421

Query: 365 VEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQ 417
           V H G+    GHY ++ + S   W + NDS V+ + +E VL + AY+LFY  +
Sbjct: 422 VSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIR 473
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query683
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 100.0
3mp2_A211 Non-structural protein 3; papain-like protease, TG 96.5
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 94.86
3shq_A320 UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila 84.6
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.3e-64  Score=542.94  Aligned_cols=310  Identities=28%  Similarity=0.486  Sum_probs=268.8

Q ss_pred             CCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCC---CCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhh
Q 005687          106 VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPC---DGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNL  182 (683)
Q Consensus       106 ~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~---~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L  182 (683)
                      .++||.|+||||||||+||+|+++|+|+++|+...+....   .......+++++|+.+|..++......++|..|+.++
T Consensus         7 g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l   86 (367)
T 2y6e_A            7 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQV   86 (367)
T ss_dssp             TCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHHHH
T ss_pred             CCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHHHH
Confidence            3589999999999999999999999999999875432211   1112234788899999998887777899999999999


Q ss_pred             hhccccccccccccHHHHHHHHHHHHHHhhccCCCCcc-----cc---------------ccCCCccceeecceEEEEEE
Q 005687          183 NYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDE-----SL---------------SSQGDNIVQRVFGGCLISKL  242 (683)
Q Consensus       183 ~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~-----~~---------------~~~~~s~I~~lF~G~l~s~i  242 (683)
                      ++..+.|.+++||||||||.+|||.|++++........     ..               .....++|.++|+|++.+++
T Consensus        87 ~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~~  166 (367)
T 2y6e_A           87 GRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTL  166 (367)
T ss_dssp             HHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEE
T ss_pred             HHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEeeeE
Confidence            99999999999999999999999999998754322110     00               01246789999999999999


Q ss_pred             EecCCCCcccccccceeeeeeeccc-------------------CChHHHHHhhhhhccccCCCCcccccccCccceeee
Q 005687          243 QCCNCGSCSDTYEPLIDLSLEIEDV-------------------GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEK  303 (683)
Q Consensus       243 ~C~~Cg~~S~~~E~F~~LsL~I~~~-------------------~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K  303 (683)
                      +|..|++++.++|+|++|+|+|+..                   .+|++||+.|+..|.+++ +++|.|++|++.+.+.|
T Consensus       167 ~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~-~~~~~C~~C~~~~~a~K  245 (367)
T 2y6e_A          167 VCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGE-HDPWYCPNCKKHQQATK  245 (367)
T ss_dssp             ECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC--CCEEETTTTEEECCEE
T ss_pred             EeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCC-CCCccCCCCCCCceEEE
Confidence            9999999999999999999999742                   489999999999999964 78899999999999999


Q ss_pred             eeeeecCCceeEEEEeeeeecCceeeeecceeecCc-cccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEE
Q 005687          304 QLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPL-ELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIR  382 (683)
Q Consensus       304 ~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~-~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr  382 (683)
                      +..|++||+||+|||+||.++.....|+.+.|.||. .|||.+|+.....  ....|+|+|||+|.|. +++|||+||||
T Consensus       246 ~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~--~~~~Y~L~avv~H~G~-~~~GHY~a~~~  322 (367)
T 2y6e_A          246 KFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA--RPYVYDLIAVSNHYGA-MGVGHYTAYAK  322 (367)
T ss_dssp             EEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS--CCCEEEEEEEEEEECS-SSSCEEEEEEE
T ss_pred             EEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCC--CCceEEEEEEeecCCC-CCCCeeeEEEE
Confidence            999999999999999999998777889999999997 7999999976532  3579999999999996 89999999999


Q ss_pred             cC-CCeEEEEeCCcceEeccccccCCCeEEEEEEEcCC
Q 005687          383 SS-PDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQGT  419 (683)
Q Consensus       383 ~~-~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R~~~  419 (683)
                      .. +++||+|||+.|+++++++|.+..||||||+|++.
T Consensus       323 ~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~  360 (367)
T 2y6e_A          323 NKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDD  360 (367)
T ss_dssp             CTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC
T ss_pred             cCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCC
Confidence            86 78999999999999999999999999999999875
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 683
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 7e-57
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 3e-51
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 4e-51
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-39
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7e-37
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  194 bits (493), Expect = 7e-57
 Identities = 91/335 (27%), Positives = 145/335 (43%), Gaps = 31/335 (9%)

Query: 109 GLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGA---TEGFCVICALRDHIELS 165
           GL NLGNTC++N+ILQC  +   L        +    + +        V       ++  
Sbjct: 17  GLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKAL 76

Query: 166 LASSGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQ 225
                + +SP+     +  I+  F  Y Q+D+ E L  L+D L      +  +       
Sbjct: 77  WTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEEN 136

Query: 226 G--------------------DNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIE 265
                                ++I+  +F G   S +QC  C   S T+E  + LSL + 
Sbjct: 137 NDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLA 196

Query: 266 D--VGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKT 323
                +L   L  F+K EK+ D   +F C  C+ +    K++ + K+P V   HLKRF  
Sbjct: 197 STSKCTLQDCLRLFSKEEKLTD-NNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 255

Query: 324 DGSYVVKIDKHVEFP-LELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIR 382
           DG +  K+   V+FP   LDL  Y  G +N+    KY+L+++  H G     GHY +Y +
Sbjct: 256 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLK--KYNLFSVSNHYG-GLDGGHYTAYCK 312

Query: 383 SSPD-TWHRLNDSRVTRVEEEFVLSQDAYILFYAK 416
           ++    W + +D  V+ +    V S  AYILFY  
Sbjct: 313 NAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 347
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query683
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-57  Score=482.07  Aligned_cols=318  Identities=24%  Similarity=0.407  Sum_probs=267.2

Q ss_pred             CCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhcc
Q 005687          107 GAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYIS  186 (683)
Q Consensus       107 p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~  186 (683)
                      .+||.|+||||||||+||+|+++|+|+++++......    .....+++++|+.+|..+.. +.+++.|..|+..+..  
T Consensus         6 ~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~----~~~~~~~~~~l~~lf~~l~~-~~~~~~~~~~~~~~~~--   78 (347)
T d1nbfa_           6 YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG----DDSSKSVPLALQRVFYELQH-SDKPVGTKKLTKSFGW--   78 (347)
T ss_dssp             CCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTT----CCTTTCHHHHHHHHHHHHHH-CSSCBCCHHHHHHTTC--
T ss_pred             CcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccC----CcccchHHHHHHHHHHHHhc-CCCCcChHHHHHhhch--
Confidence            3899999999999999999999999999998765432    33345788899999976554 5578899999888863  


Q ss_pred             ccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeecc
Q 005687          187 SFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIED  266 (683)
Q Consensus       187 ~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~  266 (683)
                      ..|..+.||||+|||..||+.|++++...         ...+.|.++|.|.+.+.++|..|++.+.+.|+|+.|+|+++.
T Consensus        79 ~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~---------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L~i~~  149 (347)
T d1nbfa_          79 ETLDSFMQHDVQELCRVLLDNVENKMKGT---------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG  149 (347)
T ss_dssp             CGGGGGSCBCHHHHHHHHHHHHHHHHTTS---------TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEEECTT
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHhhc---------cccccccceeceEEEEeEEeCCccceeeeecccccccccccc
Confidence            45889999999999999999999887552         334689999999999999999999999999999999999999


Q ss_pred             cCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecC--ceeeeecceeecCcccccc
Q 005687          267 VGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDG--SYVVKIDKHVEFPLELDLK  344 (683)
Q Consensus       267 ~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~~LDLs  344 (683)
                      ..++.++|..++..|.+++ ++.+.|..| ....+.|+..|.++|+||+|||+||.++.  ....|++..|.||..|||.
T Consensus       150 ~~~~~~~l~~~~~~e~l~~-~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~  227 (347)
T d1nbfa_         150 KKNIFESFVDYVAVEQLDG-DNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLD  227 (347)
T ss_dssp             CCBHHHHHHHHTCCEEECG-GGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECG
T ss_pred             ccchhhhHHhhcchheecc-ccccccccC-cceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeeccc
Confidence            9999999999999999964 555555544 66789999999999999999999998865  4567999999999999999


Q ss_pred             ccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC-CCeEEEEeCCcceEeccccccC---------------CC
Q 005687          345 PYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS-PDTWHRLNDSRVTRVEEEFVLS---------------QD  408 (683)
Q Consensus       345 ~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-~~~Wy~fNDs~Vs~vs~eeV~s---------------~~  408 (683)
                      +|+.... ......|+|+|||+|.|. +++|||+||+|.. +++||+|||+.|++|++++|+.               .+
T Consensus       228 ~~~~~~~-~~~~~~Y~L~~vI~H~G~-~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~  305 (347)
T d1nbfa_         228 EFLQKTD-PKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTN  305 (347)
T ss_dssp             GGBSSCC-TTSCCEEEEEEEEEEEEE-TTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEE
T ss_pred             ccccccc-ccCccceeeEEEEEecCC-CCCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCC
Confidence            9997653 334678999999999996 6899999999975 6799999999999999999973               36


Q ss_pred             eEEEEEEEcCCcccchhhhhhhccCCCCCCCCCchhHHHhhhhcc
Q 005687          409 AYILFYAKQGTEWVSSLLEAESIGMNADISNSSPKSVLDNVENDY  453 (683)
Q Consensus       409 AYiLfY~R~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  453 (683)
                      ||||||+|++..         ...+.+....++|+.+.+.+++++
T Consensus       306 aYiLfY~r~~~~---------~~~~~~~~~~~~~~~l~~~~~e~~  341 (347)
T d1nbfa_         306 AYMLVYIRESKL---------SEVLQAVTDHDIPQQLVERLQEEK  341 (347)
T ss_dssp             EEEEEEEEGGGH---------HHHTCCCCGGGSCHHHHHHHHTHH
T ss_pred             EEEEEEEecCch---------HHhhCCCCccccCHHHHHHHHHHH
Confidence            999999997531         111233445568999998888764
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure