Citrus Sinensis ID: 005704

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680--
Protein Sequence
MEAPLGGSDRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSALSYLSNGPEEFVEKTVDLPHAL
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccHHHHccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccc
Coil and Loop (DISEMBL)
meaplggsdrdkpntsssspvsvisNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLyeapdpypalASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSandeagsrnsdtldsnsyleNSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELqarptskmVDDLRKKVKILQAVGynsieaedwevatndEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILkgysskdrkgnvfddwdlseaggtelsekadkkhtypdqdqssMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMyeddinpfaafskkERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSAlsylsngpeefvektvdlphal
Flexible Loop (DISEMBL)
meaplggsdrdkpntsssspvsvisnFWKDFDLEKEKSLLDELGLKiaenqensqknrRKLAEstrdfkkaspeeKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEeyrteathlknqqstirRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQsandeagsrnsdtldsnsYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKelqarptskmvddlRKKVKILqavgynsieaedwevatndEEMSKMESLLLDKNRKMEHELTqlkvklsektslLETAEGKIAELTAKINEQQKLIQKLEDDILKgysskdrkgnvfddwdlseaggtelsekadkkhtypdqdqssmlkvICNQRDRFRARLRETEEEVRQLKekigvltaelektkadnvqlygkirfvqdynnekvisrgskkyaedlesgftsDIESKYKKMYEDDInpfaafskkerdqrykelgirdritlssgrfLLGNKYARTFAFFYTILLHVLVFTCLYRMSALSYLSngpeefvektvdlphal
Low Complexity Region (SEG)
MEAPLGGSDRDKPNTsssspvsvisNFWkdfdlekekslldelglkIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIrrleernrqleqqmeekvkeiveikqRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSALSYLSNGPEEFVEKTVDLPHAL
Disordered region (IsUnstruct)
**********************VISNFWKDFDLE********************************************LFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALA****************************************************************************************************************************************************************************************************************************LL*************************LRKKVKILQAVGYNSIEAEDWEV**********************************************************LIQKL**DIL**********************************************VICN******************LKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVIS************************MYEDDINPFAAF*******RYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSALSYLSN****************
Disordered Region (DISOPRED)
************************SNFWKDFDLEKEK******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSALSYLSNGPEEFVEKTV******
Disordered Region (DISEMBL)
*********************SVISNFWKDFDLEKEKSLLDELGLKIAENQ**********************EEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVR********AKQSEVNLLMDEVERAQTRLLSLQREKDLLRS****************LDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTE***************QSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSALSYLSNGPEEFVEKTVDLPHAL
Disordered Region (DISPRO)
*****************SSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS****************SYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYN****************SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS*************************************SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYN*********************SDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSALSYLSNGPEE*V*KT*DL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAPLGGSDRDKPNTSSSSPVSVISNFWKDFDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRDFKKASPEEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxFLNIYQKLYEAPDPYPALASxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHELAQSQLFEVRAQSDEERVAKQSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGSRNSDTLDSNSYLENSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSALSYLSNGPEEFVEKTVDLPHAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	682	2.2.26 [Sep-21-2011]
Q9LS42	689	Protein CASP OS=Arabidops	yes	no	1.0	0.989	0.798	0.0
Q13948	678	Protein CASP OS=Homo sapi	yes	no	0.903	0.908	0.329	5e-87
Q5R8V1	678	Protein CASP OS=Pongo abe	yes	no	0.903	0.908	0.326	1e-86
P70403	678	Protein CASP OS=Mus muscu	yes	no	0.903	0.908	0.321	2e-85
P39880	1505	Homeobox protein cut-like	no	no	0.551	0.249	0.324	2e-42
P34237	679	Protein CASP OS=Saccharom	yes	no	0.878	0.882	0.272	1e-41
P53564	1515	Homeobox protein cut-like	no	no	0.551	0.248	0.318	2e-41
O59795	633	Protein CASP OS=Schizosac	yes	no	0.829	0.894	0.268	2e-36
O14529	1486	Homeobox protein cut-like	no	no	0.511	0.234	0.279	2e-25
Q8IA98	621	Protein CASP OS=Caenorhab	yes	no	0.854	0.938	0.212	1e-24

>sp|Q9LS42|CASP_ARATH Protein CASP OS=Arabidopsis thaliana GN=CASP PE=1 SV=2

 Score = 1109 bits (2869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/689 (79%), Positives = 620/689 (89%), Gaps = 7/689 (1%)

Query: 1   MEAPLGGSDRDKPNTSSSSP-----VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQ 55
           ME    GS+RDK    SSS      + V++NFWK+FDLEKEKSLLDE GL+IAENQENSQ
Sbjct: 1   MEVSQDGSERDKTPPPSSSSSSSSPIPVVTNFWKEFDLEKEKSLLDEQGLRIAENQENSQ 60

Query: 56  KNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEA 115
           KNRRKLAESTRDFKKASPE KLS+FNSLLKGYQEEVDN+TKRAKFGENAFLNIYQKLYEA
Sbjct: 61  KNRRKLAESTRDFKKASPENKLSMFNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEA 120

Query: 116 PDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQ 175
           PDP+PALASIAEQD KLSE+ESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQ
Sbjct: 121 PDPFPALASIAEQDRKLSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQ 180

Query: 176 QMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235
           QMEEK+KE+VEIKQR LAEENQKT+E+L++REQALQDQLRQAKDSV+TMQKLHELAQ+QL
Sbjct: 181 QMEEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDSVSTMQKLHELAQNQL 240

Query: 236 FEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDT 295
           FE+RAQSDEE   KQSEV+LLMDEVERAQTRLL+L+REK  LRSQLQ+AN++  ++ SD 
Sbjct: 241 FELRAQSDEETAGKQSEVSLLMDEVERAQTRLLTLEREKGHLRSQLQTANEDTDNKKSDN 300

Query: 296 LDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDM 355
           +DSNS LENSL+AKEKIISELN E+HN+ETAL+NERE H+ EIKKLN+LL +K+  +E+M
Sbjct: 301 IDSNSMLENSLTAKEKIISELNMEIHNVETALANERESHVAEIKKLNSLLNKKDTIIEEM 360

Query: 356 KKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKME 415
           KKELQ RP++K+VDDLRKKVKILQAVGYNSIEAEDW+ AT  EEMSKMESLLLDKNRKME
Sbjct: 361 KKELQERPSAKLVDDLRKKVKILQAVGYNSIEAEDWDAATTGEEMSKMESLLLDKNRKME 420

Query: 416 HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFD 475
           HE+TQLKV+LSEK SLLE AE K  ELTAK+NEQQ+LIQKLEDDILKGY SK+RKG +FD
Sbjct: 421 HEVTQLKVQLSEKASLLEKAEAKGEELTAKVNEQQRLIQKLEDDILKGYGSKERKGALFD 480

Query: 476 DWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIG 535
           +W+ SEAG  E SE  D+KH   +QDQSSMLKVIC+QRDRFRARLRETEEE+R+LKEKIG
Sbjct: 481 EWEFSEAGVAEQSEPMDQKHVPSEQDQSSMLKVICSQRDRFRARLRETEEEIRRLKEKIG 540

Query: 536 VLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYE 595
            LT ELEKTKADNV+LYGKIR+VQDYN++KV+SRGSKKY EDLESGF+SD+ESKYKK+YE
Sbjct: 541 FLTDELEKTKADNVKLYGKIRYVQDYNHDKVVSRGSKKYVEDLESGFSSDVESKYKKIYE 600

Query: 596 DDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCL 655
           DDINPFAAFSKKER+QR K+LGIRDRITLSSGRFLLGNKYARTFAFFYTI LHVLVFTCL
Sbjct: 601 DDINPFAAFSKKEREQRIKDLGIRDRITLSSGRFLLGNKYARTFAFFYTIGLHVLVFTCL 660

Query: 656 YRMSALSYLSNGPEE--FVEKTVDLPHAL 682
           YRMSA SYLS+G EE    E T +LPH L
Sbjct: 661 YRMSAYSYLSHGAEETLMTEATTNLPHGL 689

May be involved in intra-Golgi transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q13948|CASP_HUMAN Protein CASP OS=Homo sapiens GN=CUX1 PE=1 SV=2

 Score =  322 bits (825), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 217/659 (32%), Positives = 367/659 (55%), Gaps = 43/659 (6%)

Query: 21  VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLF 80
           V  +  +WK FDL++ +  LD     +A  Q+ S+++R++L E +R+FKK +PE+     
Sbjct: 5   VGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQV 64

Query: 81  NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELES 137
             LLK +Q E+D L+KR+K  E AFLN+Y++L + PDP PAL    +  LK   L ++E+
Sbjct: 65  APLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIET 124

Query: 138 ENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQ 197
           EN+K++  LEEY  E   +KNQ+ TI+ L+E+ R+ EQ ++ + + I   K++ L  +  
Sbjct: 125 ENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFA 184

Query: 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM 257
           +    LQE + +   +L +A+  V ++Q   E  +++LF+++ + DEE  AK  E+ ++M
Sbjct: 185 EKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEIEMIM 244

Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLS 307
            ++ERA  R    QRE + LR QL SAN   +  S+     D        + S LE  L+
Sbjct: 245 TDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELA 304

Query: 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
           AKE+ I++L  ++  ++ +L+  RE   ++I +L   L  K + L+ ++++L+ +     
Sbjct: 305 AKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQAD--- 361

Query: 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
            ++++K++ IL+++ +   E      A   +    +E LLL+KNR ++ E   L++  S+
Sbjct: 362 YEEVKKELNILKSMEFAPSEG-----AGTQDAAKPLEVLLLEKNRSLQSENAALRISNSD 416

Query: 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDD--ILKGYSSKDRKGNVFDDWD-----LS 480
            +      + +I E  A   EQ++LI +LE D  I++     D +G      +     + 
Sbjct: 417 LSGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIK 476

Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
           EA        A      P+    S+L +I +QR+RFRAR +E E E R  +  +  L +E
Sbjct: 477 EATALFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSE 536

Query: 541 LEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINP 600
           L+  +ADN++L+ KI+F+Q Y       RGS           + D E +Y   YE+ ++P
Sbjct: 537 LDSLRADNIKLFEKIKFLQSYPG-----RGSG----------SDDTELRYSSQYEERLDP 581

Query: 601 FAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMS 659
           F++FSK+ER ++Y  L   D+ TLS GR +L NK ART  FFYT+ LH LVF  LY+++
Sbjct: 582 FSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLA 640

May be involved in intra-Golgi retrograde transport.

Homo sapiens (taxid: 9606)

>sp|Q5R8V1|CASP_PONAB Protein CASP OS=Pongo abelii GN=CUTL1 PE=2 SV=1

 Score =  321 bits (822), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 215/659 (32%), Positives = 367/659 (55%), Gaps = 43/659 (6%)

Query: 21  VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLF 80
           V  +  +WK FDL++ +  LD     +A  Q+ S+++R++L E +R+FKK +PE+     
Sbjct: 5   VGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQV 64

Query: 81  NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELES 137
             LLK +Q E+D L+KR+K  E AFLN+Y++L + PDP PAL    +  LK   L ++E+
Sbjct: 65  APLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIET 124

Query: 138 ENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQ 197
           EN+K++  LEEY  E   +KNQ+ TI+ L+E+ R+ EQ ++ + + I   K++ L  +  
Sbjct: 125 ENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFA 184

Query: 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM 257
           +    LQE + +   +L +A+  V ++Q   E  +++LF+++ + DEE  AK  E+ ++M
Sbjct: 185 EKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEIEMIM 244

Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLS 307
            ++ERA  R    QRE + LR QL SAN   +  S+     D        + S LE  L+
Sbjct: 245 TDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELA 304

Query: 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
           AKE+ I++L  ++  ++ +L+  RE   ++I +L   L  K + L+ ++++L+ +     
Sbjct: 305 AKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQAD--- 361

Query: 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
            ++++K++ IL+++ +   E      A   +    +E LLL+KNR ++ E   L++  S+
Sbjct: 362 YEEVKKELNILKSMEFAPSEG-----AGTQDAAKPLEVLLLEKNRSLQSENAALRISNSD 416

Query: 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDD--ILKGYSSKDRKGNVFDDWD-----LS 480
            +      + ++ E  A   EQ++LI +LE D  I++     D +G      +     + 
Sbjct: 417 LSGRCAELQVRVTEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIK 476

Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
           EA        A      P+    S+L +I +QR+RFRAR +E E E R  +  +  L +E
Sbjct: 477 EATALFYGPTAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSE 536

Query: 541 LEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINP 600
           L+  +ADN++L+ KI+F+Q Y       RGS           + D E +Y   YE+ ++P
Sbjct: 537 LDSLRADNIKLFEKIKFLQSYPG-----RGSG----------SDDTELRYSSQYEERLDP 581

Query: 601 FAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMS 659
           F++FSK+ER ++Y  +   D+ TLS GR +L NK ART  FFYT+ LH LVF  LY+++
Sbjct: 582 FSSFSKRERQRKYLSMSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLA 640

May be involved in intra-Golgi retrograde transport.

Pongo abelii (taxid: 9601)

>sp|P70403|CASP_MOUSE Protein CASP OS=Mus musculus GN=Cux1 PE=2 SV=2

 Score =  317 bits (812), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 212/659 (32%), Positives = 364/659 (55%), Gaps = 43/659 (6%)

Query: 21  VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLF 80
           V  +S +WK FDL++ +  LD     +A  Q+ S+++R++L E +R+FKK +PE+     
Sbjct: 5   VGSMSQYWKRFDLQQLQRELDAAATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQV 64

Query: 81  NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELES 137
             LLK +Q E+D L+KR+K  E AFL +Y++L + PDP PAL    + ++K   L ++E+
Sbjct: 65  APLLKSFQGEIDALSKRSKEAEAAFLTVYKRLIDVPDPVPALDVGQQLEIKVQRLHDIET 124

Query: 138 ENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQ 197
           EN+K++  LEEY  E   +KNQ+ TI+ L+E+ R+ EQ ++ + + I   K++ L  +  
Sbjct: 125 ENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKSQAETIALEKEQKLQNDFA 184

Query: 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM 257
           +    LQE + +   +L +A+  + T+Q   E  +++LF+++ + DEE  AK  E+ ++M
Sbjct: 185 EKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRTELFDLKTKYDEETTAKADEIEMIM 244

Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLS 307
            ++ERA  R    QRE + LR QL SAN   +  S+     D        + S LE  L+
Sbjct: 245 TDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELA 304

Query: 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
           AKE+ I++L  ++  ++ +L+  RE   ++I +L   L  K + L+ ++++L+ +     
Sbjct: 305 AKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAKNSTLKQLEEKLKGQAD--- 361

Query: 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
            ++++K++  L+++ +   E      A   +    +E LLL+KNR ++ E   L++  S+
Sbjct: 362 YEEVKKELNTLKSMEFAPSEG-----AGTQDSTKPLEVLLLEKNRSLQSENATLRISNSD 416

Query: 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDDI--LKGYSSKDRKGNVFDDWD-----LS 480
            +      +  + E TAK  EQ++LI +LE D+  ++     D +G      +     + 
Sbjct: 417 LSGRCAELQIHLTEATAKAVEQKELIARLEQDLSTIQSIQRPDAEGASEQGLEKIPEPIK 476

Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
           EA             T P+    S+L +I +QR+RFR R +E E E R  +  I  L +E
Sbjct: 477 EATALFYGPSMSSSGTLPEGQVDSLLSIISSQRERFRTRNQELEAESRMAQHTIQALQSE 536

Query: 541 LEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINP 600
           L+  +ADN++L+ KI+F+Q Y    + S                D E +Y   YE+ ++P
Sbjct: 537 LDSLRADNIKLFEKIKFLQSYPGRGIGS---------------DDTELRYSSQYEERLDP 581

Query: 601 FAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMS 659
           F++FSK+ER ++Y  L   D+ TL  GR +L NK ART  FFYT+ LH LVF  LY+++
Sbjct: 582 FSSFSKRERQRKYLGLSPWDKATLGMGRLILSNKTARTIGFFYTLFLHCLVFLVLYKLA 640

May be involved in intra-Golgi retrograde transport.

Mus musculus (taxid: 10090)

>sp|P39880|CUX1_HUMAN Homeobox protein cut-like 1 OS=Homo sapiens GN=CUX1 PE=1 SV=3

 Score =  174 bits (441), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 228/397 (57%), Gaps = 21/397 (5%)

Query: 40  LDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAK 99
           LD     +A  Q+ S+++R++L E +R+FKK +PE+       LLK +Q E+D L+KR+K
Sbjct: 13  LDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSK 72

Query: 100 FGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELESENRKMKIELEEYRTEATHL 156
             E AFLN+Y++L + PDP PAL    +  LK   L ++E+EN+K++  LEEY  E   +
Sbjct: 73  EAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEV 132

Query: 157 KNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQ 216
           KNQ+ TI+ L+E+ R+ EQ ++ + + I   K++ L  +  +    LQE + +   +L +
Sbjct: 133 KNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEE 192

Query: 217 AKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDL 276
           A+  V ++Q   E  +++LF+++ + DEE  AK  E+ ++M ++ERA  R    QRE + 
Sbjct: 193 AEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAET 252

Query: 277 LRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLSAKEKIISELNSELHNIETA 326
           LR QL SAN   +  S+     D        + S LE  L+AKE+ I++L  ++  ++ +
Sbjct: 253 LREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQAS 312

Query: 327 LSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSI 386
           L+  RE   ++I +L   L  K + L+ ++++L+ +      ++++K++ IL+     S+
Sbjct: 313 LTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQ---ADYEEVKKELNILK-----SM 364

Query: 387 EAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKV 423
           E    E A   +    +E LLL+KNR ++ E   L++
Sbjct: 365 EFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRI 401

Probably has a broad role in mammalian development as a repressor of developmentally regulated gene expression. May act by preventing binding of positively-activing CCAAT factors to promoters. Component of nf-munr repressor; binds to the matrix attachment regions (MARs) (5' and 3') of the immunoglobulin heavy chain enhancer. Represses T-cell receptor (TCR) beta enhancer function by binding to MARbeta, an ATC-rich DNA sequence located upstream of the TCR beta enhancer.

Homo sapiens (taxid: 9606)

>sp|P34237|CASP_YEAST Protein CASP OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COY1 PE=1 SV=2

 Score =  171 bits (434), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 185/679 (27%), Positives = 340/679 (50%), Gaps = 80/679 (11%)

Query: 26  NFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLK 85
           + W   DL   +  LD   ++I + +  S  +R+ LA  T+ FKK  PEEKL+  N ++K
Sbjct: 11  DIWAKADLTNLQRELDADVIEIKDKETLSLNSRKSLATETKKFKKLEPEEKLNNVNKIIK 70

Query: 86  GYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIE 145
            YQ E+DNLT+R+KF E    ++Y+KL EAPDP P L S  E+  K+   +S+  K KI 
Sbjct: 71  QYQREIDNLTQRSKFSEKVLFDVYEKLSEAPDPQPLLQSSLEKLGKID--DSKELKEKIS 128

Query: 146 -LEEYRTEATHLKNQQSTIRRLEERN-RQLEQQMEEKVKEI---VEIKQRGLAEENQ--- 197
            LE+   +    +  +S +  LE+ + + L +++  K +EI    E K R   E      
Sbjct: 129 YLEDKLAKYADYETLKSRLLDLEQSSAKTLAKRLTAKTQEINSTWEEKGRNWKEREADLL 188

Query: 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM 257
           K L  +QE+ +AL+ ++ +  D      +  +   +Q         +E   + +E NL+ 
Sbjct: 189 KQLTNVQEQNKALEAKISKNIDIEGNGNEDGDQENNQ---------KEVSTRIAEYNLVT 239

Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELN 317
            E+E  Q R+  L++  + L   L  A  EA              E  L AKE  +++L 
Sbjct: 240 QELETTQARIYQLEKRNEELSGALAKATSEAEK------------ETELHAKELKLNQLE 287

Query: 318 SELHNIETALSNERE---QHMNEIK-KLNALLIEKEAA---LEDMKKELQARPT-SKMVD 369
           SE   +  +   ER+     +NE+K +LN+++ E E+    LE ++++L      +K+ +
Sbjct: 288 SENALLSASYEQERKSTSHAINELKEQLNSVVAESESYKSELETVRRKLNNYSDYNKIKE 347

Query: 370 DLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKT 429
           +L    KI    G N  ++ D ++ + D+  +  ES LL  N+K++  L + + K + + 
Sbjct: 348 ELSALKKI--EFGVNEDDS-DNDIRSEDKNDNTFESSLLSANKKLQATLAEYRSKSTAQE 404

Query: 430 SLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSE 489
                 +  + +L  +I   ++  +KLE D+       ++  NV   ++ + +  + ++ 
Sbjct: 405 EERNELKKSVDQLKQQIATLKEANEKLETDL-------EKVENVSPHFNETASMMSGVTR 457

Query: 490 KADKKHTY-----------PDQ-----DQSSMLKVICNQRDRFRARLRETEEEVRQLKEK 533
           + + + ++           P+      +QS++L ++  QRDRFR+R  + E+++RQ   +
Sbjct: 458 QMNNRTSHKMSPTSSIIGIPEDGELSGNQSTILPIVTKQRDRFRSRNMDLEKQLRQGNSE 517

Query: 534 IGVLTAELEKTKADNVQLYGKIRFVQDYNNEKV-ISRGSKKYAEDLESGFTSDIESKYKK 592
            G L  E+ K K DN +LY +IR++Q YNN    +++ +++           D+ES+Y +
Sbjct: 518 KGKLKLEISKLKGDNTKLYERIRYLQSYNNNNAPVNQSTERI----------DVESQYSR 567

Query: 593 MYEDDINPFAAFSKKERDQ-RYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLV 651
           +Y++ ++P A F + E +  + K+L   +++  S  + +L NK  R    FY I LH LV
Sbjct: 568 VYDESLHPMANFRQNELNHYKNKKLSALEKLFSSFAKVILQNKMTRMVFLFYCIGLHGLV 627

Query: 652 F-TCLYRMSALSYLSNGPE 669
           F   +Y ++   Y++  PE
Sbjct: 628 FMMSMYVINISGYMT--PE 644

May be involved in intra-Golgi transport.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P53564|CUX1_MOUSE Homeobox protein cut-like 1 OS=Mus musculus GN=Cux1 PE=1 SV=3

 Score =  171 bits (432), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 227/395 (57%), Gaps = 19/395 (4%)

Query: 40  LDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAK 99
           LD     +A  Q+ S+++R++L E +R+FKK +PE+       LLK +Q E+D L+KR+K
Sbjct: 13  LDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSK 72

Query: 100 FGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELESENRKMKIELEEYRTEATHL 156
             E AFL +Y++L + PDP PAL    + ++K   L ++E+EN+K++  LEEY  E   +
Sbjct: 73  EAEAAFLTVYKRLIDVPDPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEV 132

Query: 157 KNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQ 216
           KNQ+ TI+ L+E+ R+ EQ ++ + + I   K++ L  +  +    LQE + +   +L +
Sbjct: 133 KNQEVTIKALKEKIREYEQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEE 192

Query: 217 AKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDL 276
           A+  + T+Q   E  +++LF+++ + DEE  AK  E+ ++M ++ERA  R    QRE + 
Sbjct: 193 AEHKLQTLQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAET 252

Query: 277 LRSQLQSAND--EAGSRNSDTLD------SNSYLENSLSAKEKIISELNSELHNIETALS 328
           LR QL SAN   +  S+     D      + S LE  L+AKE+ I++L  ++  ++ +L+
Sbjct: 253 LREQLSSANHSLQLASQIQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLT 312

Query: 329 NEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEA 388
             RE   ++I +L   L  K + L+ ++++L+ +      ++++K++  L+     S+E 
Sbjct: 313 KLRENSASQISQLEQQLNAKNSTLKQLEEKLKGQ---ADYEEVKKELNTLK-----SMEF 364

Query: 389 EDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKV 423
              E A   +    +E LLL+KNR ++ E   L++
Sbjct: 365 APSEGAGTQDSTKPLEVLLLEKNRSLQSENATLRI 399

Probably has a broad role in mammalian development as a repressor of developmentally regulated gene expression. May act by preventing binding of positively-activing CCAAT factors to promoters. Component of nf-munr repressor; binds to the matrix attachment regions (MARs) (5' and 3') of the immunoglobulin heavy chain enhancer. Represses T-cell receptor (TCR) beta enhancer function by binding to MARbeta, an ATC-rich DNA sequence located upstream of the TCR beta enhancer.

Mus musculus (taxid: 10090)

>sp|O59795|CASP_SCHPO Protein CASP OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=coy1 PE=3 SV=1

 Score =  154 bits (389), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 173/644 (26%), Positives = 303/644 (47%), Gaps = 78/644 (12%)

Query: 51  QENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQ 110
           Q+ S   R++L+  T++F+K   E KL     LLK YQ  +D+LTKRAK  E  F  +Y+
Sbjct: 39  QKTSLDERKELSSKTKEFRKQPDEVKLGEMKGLLKLYQSGIDSLTKRAKSAEATFFRVYE 98

Query: 111 KLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERN 170
            L E PDPYP L   A            N K + ++E+ + E   ++       +LE   
Sbjct: 99  TLGEVPDPYPLLIEAA-----------NNLKTQKQIEDLKKEKEEMEGSLQGKEKLEREV 147

Query: 171 RQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKL--- 227
             L +++ +K K++VE +    A   ++  E     +Q L   + Q  ++ +T+QKL   
Sbjct: 148 ENLRKEL-DKYKDLVETEAEKRAAITKEECEKSWLEQQKLYKDMEQ--ENASTIQKLTSK 204

Query: 228 -HELAQSQL-FEVRAQSDEERV----AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281
             EL  SQL  +++A  +E       AK +EVN ++ E++ A   ++ LQ E  +L+   
Sbjct: 205 IRELQASQLDHDLQASQNESAGLDVNAKSAEVNAILSELDDANKIIVELQAEIAVLK--- 261

Query: 282 QSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKL 341
           Q+  ++    + D L +    +  L   + +  +L++EL +I+ A   E E H   I+ L
Sbjct: 262 QNTKEQKSGSSQDDLSNQQ--KQQLDFMDSLNKKLSTELESIKEASRKEMETHCATIQTL 319

Query: 342 NALLIEKEAALEDMKKELQARPTSKM--VDDLRKKVKILQAVGYNSIEAEDWEVATNDEE 399
                E E       KE      +K    D++++++ +L+ + ++       E AT+  E
Sbjct: 320 -----ENEVKEARKVKEESLTLANKFSDYDEIKRELSVLKQIEFSG------EHATH--E 366

Query: 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDD 459
            + +ES LL + +++  EL +L+   ++ T  +     K + L  K +EQ+++I+KLE D
Sbjct: 367 NTSLESQLLKREKQLSEELAKLRSTNAQLTDRITQESKKASFLEQKASEQEEVIRKLEKD 426

Query: 460 ILKGYSSKDRKGNVFDDWDLSEAGGT--ELSEKADKKHTYP-------------DQDQSS 504
           +    +  D +G+V+         GT  +LS  +      P             ++  S+
Sbjct: 427 L----ADVDVEGSVYLSNTTYRREGTSGQLSPTSSIMGGNPSLFNGSVLSRNSVNETGSA 482

Query: 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE 564
           ++ VI  QRDRFR        +V    +KI +L ++LE+ +  N  LY ++RF   Y   
Sbjct: 483 IVDVIKQQRDRFRRANVTLVNQVSAANDKIALLESKLEEVEKSNTLLYEQMRFRDHY--- 539

Query: 565 KVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITL 624
                  +K+ E   S   +         YE+ I+PFA+F KKE ++ Y  +G  +RI  
Sbjct: 540 -------QKHVEPSSSHLQT------AAAYENSISPFASFRKKEAERAYSRMGSFERIVY 586

Query: 625 SSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSALSYLSNGP 668
           +  R LL ++  R   F Y ILLH+ +   L ++      +  P
Sbjct: 587 ALLRTLLFSRATRGLFFMYLILLHLFIMIVLLKLGIAGNTAYTP 630

May be involved in intra-Golgi transport.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O14529|CUX2_HUMAN Homeobox protein cut-like 2 OS=Homo sapiens GN=CUX2 PE=1 SV=4

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 188/383 (49%), Gaps = 34/383 (8%)

Query: 21  VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLF 80
           V  +  +WK FDL + +  L+ +  +++  QE S+ + + L E  R+FKK  PEE   + 
Sbjct: 5   VGSMFQYWKRFDLRRLQKELNSVASELSARQEESEHSHKHLIELRREFKKNVPEEIREMV 64

Query: 81  NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENR 140
             +LK +Q EV  L+KR++  E AFL++Y++L EAPDP P   +    D +L     +  
Sbjct: 65  APVLKSFQAEVVALSKRSQEAEAAFLSVYKQLIEAPDPVPVFEAARSLDDRL-----QPP 119

Query: 141 KMKIELEEYRTEATHLKNQQSTIRRLEER--NRQLEQQMEEKVKEIVEIKQRGLAEEN-- 196
                 +  R   T  K     +   E+R         + E  + +  I  + L  E   
Sbjct: 120 SFDPSGQPRRDLHTSWKRNPELLSPKEQREGTSPAGPTLTEGSR-LPGIPGKALLTETLL 178

Query: 197 -------QKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAK 249
                  QK L   QE +  L  +L +A++ +  +    +  Q++L E+R + DEE  +K
Sbjct: 179 QRNEAEKQKGL---QEVQITLAARLGEAEEKIKVLHSALKATQAELLELRRKYDEEAASK 235

Query: 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN-----------DEAGSRNSDTLDS 298
             EV L+M  +E+A  R  + QRE + LR QL S N             +G + + TL S
Sbjct: 236 ADEVGLIMTNLEKANQRAEAAQREVESLREQLASVNSSIRLACCSPQGPSGDKVNFTLCS 295

Query: 299 NSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKE 358
              LE +L++K++ I  L  ++ +++++L    E   N+I  L   L  K  A+E ++++
Sbjct: 296 GPRLEAALASKDREILRLLKDVQHLQSSLQELEEASANQIADLERQLTAKSEAIEKLEEK 355

Query: 359 LQARPTSKMVDDLRKKVKILQAV 381
           LQA+      ++++ ++ IL+A+
Sbjct: 356 LQAQ---SDYEEIKTELSILKAM 375

May be a transcription factor involved in neural specification. Binds to DNA in a sequence-specific manner.

Homo sapiens (taxid: 9606)

>sp|Q8IA98|CASP_CAEEL Protein CASP OS=Caenorhabditis elegans GN=ceh-44 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 137/646 (21%), Positives = 317/646 (49%), Gaps = 63/646 (9%)

Query: 23  VISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNS 82
           ++S  W+  D ++ ++ ++     + + Q++S+  + +L E +  ++  + ++   +   
Sbjct: 3   IVSRAWESVDWDRIQTRVEAEVTALGQRQDDSEIRKTRLVEESNAYRGRTNKDSRKVAIP 62

Query: 83  LLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPAL--ASIAEQDLKLSELESENR 140
           L+K +Q E D L  R+   ENA ++I + +   PDP   L  A   + D + ++   E R
Sbjct: 63  LIKAFQSEFDGLLARSTAAENALIDICKSIVSLPDPKSLLKGAEAWKNDAEKTQKAVEER 122

Query: 141 -KMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIV-EIKQRGLAEENQK 198
            ++K +L +   E   L+ +   +R+L+++  +LE + +  ++  V E++++   E N +
Sbjct: 123 EELKRQLIKVNNELEDLRGKDVKVRKLKDKLAKLESEQDIFIENAVNEVEKKAEQELNDR 182

Query: 199 TLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSE-VNLLM 257
             E++ E+E+ +++Q    + ++ +++  ++  Q +L E+  Q+ E++   ++E +++ M
Sbjct: 183 LTELIAEKEK-MKEQNEILEKNMDSLESKNKDIQRKL-EIAKQTVEQKDGLENEQLSIAM 240

Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELN 317
            ++  A+ +++ L+     L ++ +  N+   S+ +  ++  + L + L  K+ +I +L 
Sbjct: 241 KDLADAKHKIVFLEERVSQLENEAEKVNE---SKKAGNIEDIAALGSVLVQKDDVIQQLT 297

Query: 318 SELHNIETALSNEREQ---HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKK 374
           +++   E +   E  +    ++ ++K N  LI     L ++K +L++R   + +   + +
Sbjct: 298 NDIKRHEASHVEELAKWKLAVSAVEKKNKTLI---GELNELKNQLESRNDYEAI---KNE 351

Query: 375 VKILQAVGY-NSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLE 433
           +++L+ + + +S EA    +    E +  ++ LL +KNR++++E   L+V         E
Sbjct: 352 LRLLREIEFGDSAEANAESIERLGETVETLDRLLAEKNRRLQNENASLRVANDGFKGRNE 411

Query: 434 TAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADK 493
             E ++  L  K     +LI +LE D+           +   D  + E  GT    +  K
Sbjct: 412 EQEAELTVLKEKSERNDRLIAQLEADL----------ASAVQDIGIPERMGT---NEMLK 458

Query: 494 KHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYG 553
               P    +S++ ++ +QR+R   R+   EE +   K K   +  E+E+ + +N++L  
Sbjct: 459 DAPAPTISDASLVPILTSQRNRLHERVTSLEEAISLEKTKQLSVQNEIERVREENIRLCE 518

Query: 554 KIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRY 613
           +IRF+Q        S G ++ A ++E+G  +D  +                       R 
Sbjct: 519 RIRFLQ--------SPGGQQQA-NVEAGLGNDFRN---------------------GNRN 548

Query: 614 KELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMS 659
           K++ + D+ TL+ GR +L    +RT  F Y ++LH L+   LY+ +
Sbjct: 549 KKVSLHDKTTLNMGRAILATPKSRTVFFSYLLILHALIMLVLYKFA 594

May be involved in intra-Golgi retrograde transport.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	682
255541800	682	Protein CASP, putative [Ricinus communis	0.998	0.998	0.857	0.0
225455880	684	PREDICTED: protein CASP [Vitis vinifera]	0.998	0.995	0.844	0.0
356520513	690	PREDICTED: protein CASP-like [Glycine ma	0.998	0.986	0.854	0.0
224118916	689	predicted protein [Populus trichocarpa]	0.997	0.986	0.843	0.0
297734183	671	unnamed protein product [Vitis vinifera]	0.976	0.992	0.845	0.0
356531222	692	PREDICTED: protein CASP-like [Glycine ma	0.986	0.972	0.850	0.0
357521095	683	Protein CASP [Medicago truncatula] gi|35	0.992	0.991	0.816	0.0
18401903	689	protein CASP [Arabidopsis thaliana] gi|8	1.0	0.989	0.798	0.0
297830502	705	hypothetical protein ARALYDRAFT_318610 [	1.0	0.967	0.784	0.0
449442592	685	PREDICTED: protein CASP-like [Cucumis sa	0.998	0.994	0.820	0.0

>gi|255541800|ref|XP_002511964.1| Protein CASP, putative [Ricinus communis] gi|223549144|gb|EEF50633.1| Protein CASP, putative [Ricinus communis]

 Score = 1184 bits (3063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/683 (85%), Positives = 640/683 (93%), Gaps = 2/683 (0%)

Query: 1   MEAPLGGSDRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRK 60
           MEAP GGSDR+K N SSS P+ V+SNFWK+FDLEKEK +LDE GL+IAENQENS KNRRK
Sbjct: 1   MEAPPGGSDREKSNPSSS-PIPVVSNFWKEFDLEKEKIVLDEQGLRIAENQENSLKNRRK 59

Query: 61  LAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 120
           LAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP
Sbjct: 60  LAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 119

Query: 121 ALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEK 180
           ALASIA+QDLKLSELESENRKMK+ELEE+RTEATHLKNQQ+TIRRLE+RNRQLEQQMEEK
Sbjct: 120 ALASIADQDLKLSELESENRKMKVELEEFRTEATHLKNQQATIRRLEDRNRQLEQQMEEK 179

Query: 181 VKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
           VKEIVE+KQR LAEENQKTLE+L+EREQ+LQDQLRQAK+SV+ MQKLHELAQSQLFEV A
Sbjct: 180 VKEIVEMKQRSLAEENQKTLEVLKEREQSLQDQLRQAKESVSNMQKLHELAQSQLFEVHA 239

Query: 241 QSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNS 300
           QS+EER AKQSEVNLLMDEVERAQTRLLSL+REK +LRSQLQSAN+E G++ SD+LDSN+
Sbjct: 240 QSEEERAAKQSEVNLLMDEVERAQTRLLSLEREKGVLRSQLQSANEETGNKKSDSLDSNN 299

Query: 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360
            LEN+LSAKEKIISELN ELHNIETAL+NEREQH+NEIKKLN +L EKE ++E+MKKELQ
Sbjct: 300 VLENTLSAKEKIISELNMELHNIETALTNEREQHINEIKKLNMVLNEKELSIEEMKKELQ 359

Query: 361 ARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQ 420
           ARPT+K+VDDLRKKVKILQAVGYNSIEAEDWE AT+ EEMSKMESLLLDKNRKMEHELT 
Sbjct: 360 ARPTAKLVDDLRKKVKILQAVGYNSIEAEDWEAATSGEEMSKMESLLLDKNRKMEHELTH 419

Query: 421 LKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLS 480
           LKVKLSEK S LETAE KI EL+AK+NEQQKLIQKLEDDILKGYSSKD+KG +FDDWDLS
Sbjct: 420 LKVKLSEKESTLETAESKIVELSAKVNEQQKLIQKLEDDILKGYSSKDQKGGLFDDWDLS 479

Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
           EAG  ELSE AD+KH   DQDQSSMLKVICNQRDRFR RLRETEEEVRQLKEKIG+LTAE
Sbjct: 480 EAGRVELSENADQKHVSSDQDQSSMLKVICNQRDRFRKRLRETEEEVRQLKEKIGLLTAE 539

Query: 541 LEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINP 600
           LEK+KADNV+LYGKIR+VQDYN EKV+SRGSKK AEDLESGF+SD+ESKYKK+YEDDINP
Sbjct: 540 LEKSKADNVKLYGKIRYVQDYNLEKVVSRGSKKQAEDLESGFSSDVESKYKKIYEDDINP 599

Query: 601 FAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSA 660
           FAAFSKKERDQRYKELG+RDRITLSSGRFLLGNKYARTFAFFYTI LH+LVFTCLYRMSA
Sbjct: 600 FAAFSKKERDQRYKELGLRDRITLSSGRFLLGNKYARTFAFFYTIGLHILVFTCLYRMSA 659

Query: 661 LSYLSNGPEEFV-EKTVDLPHAL 682
           LSYLS+G E +  EK ++LPHAL
Sbjct: 660 LSYLSHGEESYTGEKQLNLPHAL 682

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455880|ref|XP_002275327.1| PREDICTED: protein CASP [Vitis vinifera]

 Score = 1180 bits (3052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/683 (84%), Positives = 645/683 (94%), Gaps = 2/683 (0%)

Query: 1   MEAPLGGSDRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRK 60
           MEAP GGSDRDKP  +SSSP+ V+SNFW++FDLEKE+S+LDE GL+IAENQENSQKNRRK
Sbjct: 1   MEAPQGGSDRDKPMPASSSPIPVVSNFWREFDLEKERSVLDEQGLRIAENQENSQKNRRK 60

Query: 61  LAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 120
           LAESTRDFKKASP+EKL+LFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP
Sbjct: 61  LAESTRDFKKASPDEKLNLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 120

Query: 121 ALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEK 180
           ALASIAEQD+KLSELESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQQMEEK
Sbjct: 121 ALASIAEQDMKLSELESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQMEEK 180

Query: 181 VKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
           VKEIVE+KQR LAEENQKTLE+L+ERE+ LQDQLRQAK+SV+ MQKLHELAQSQ+FE+RA
Sbjct: 181 VKEIVEMKQRSLAEENQKTLEVLKERERLLQDQLRQAKESVSNMQKLHELAQSQMFELRA 240

Query: 241 QSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNS 300
           QS+E+  AKQSEV+LLMDEVERAQT LLSL+REK LLRS+LQSANDE G + SD LDSNS
Sbjct: 241 QSEEDTAAKQSEVSLLMDEVERAQTLLLSLEREKGLLRSKLQSANDENGQKKSDNLDSNS 300

Query: 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360
            LENSLSAKEKIISELN ELHNIE  LSNEREQH+NEIK+LNALL EK+ ALE++KKEL 
Sbjct: 301 ILENSLSAKEKIISELNMELHNIEITLSNEREQHVNEIKRLNALLNEKDLALEEIKKELL 360

Query: 361 ARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQ 420
           ARPT+K+VDDLRKKVKILQAVGYNSIEAEDWEVAT+ EEMSK+ESLLLDKNRKMEHELTQ
Sbjct: 361 ARPTAKLVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKLESLLLDKNRKMEHELTQ 420

Query: 421 LKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLS 480
           LKVKL+EKTSLLETAEGKI ELTAK+NEQQ+LIQKLEDDILKGYSSK+RKG++F+DWDL 
Sbjct: 421 LKVKLTEKTSLLETAEGKIVELTAKVNEQQRLIQKLEDDILKGYSSKERKGSLFEDWDLL 480

Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
           + G TE S++A++KH  PDQ+Q+SMLKVICNQRDRFRARLRETEEEV+QLKEKIG+LT E
Sbjct: 481 DNGATETSQRAEQKHVSPDQEQNSMLKVICNQRDRFRARLRETEEEVKQLKEKIGLLTVE 540

Query: 541 LEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINP 600
           LEKTKADNV+LYGKIR+VQDYN EKV+SRGSKK++EDLESGF+SD+ESKYKK+YEDDINP
Sbjct: 541 LEKTKADNVKLYGKIRYVQDYNLEKVVSRGSKKHSEDLESGFSSDVESKYKKIYEDDINP 600

Query: 601 FAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSA 660
           FAAFSKKERDQRYKELGIRD+ITLSSGRFLLGN+YARTFAFFYTI LHVLVFTCLYRMSA
Sbjct: 601 FAAFSKKERDQRYKELGIRDKITLSSGRFLLGNRYARTFAFFYTIGLHVLVFTCLYRMSA 660

Query: 661 LSYLSNGPEEFV--EKTVDLPHA 681
           LS+LSNGPEE +  +K ++LPHA
Sbjct: 661 LSHLSNGPEESLIGQKIINLPHA 683

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520513|ref|XP_003528906.1| PREDICTED: protein CASP-like [Glycine max]

 Score = 1167 bits (3018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 589/689 (85%), Positives = 639/689 (92%), Gaps = 8/689 (1%)

Query: 1   MEAPLGGS----DRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQK 56
           MEAP GGS    +RDK    SSSP+SV+S FWKDF+LEKEKS+LDE GL+IAENQE+SQK
Sbjct: 1   MEAPQGGSGSGPERDKSTAPSSSPISVVSAFWKDFELEKEKSILDEQGLRIAENQESSQK 60

Query: 57  NRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAP 116
           NRRKLAE+TRDFKKASPE+KLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAP
Sbjct: 61  NRRKLAENTRDFKKASPEDKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAP 120

Query: 117 DPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQ 176
           DPYPALASIAEQDLK+SELESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQQ
Sbjct: 121 DPYPALASIAEQDLKISELESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQ 180

Query: 177 MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF 236
           MEEKVKEIVEIKQR LAEENQKTLE+L+EREQALQDQL+ AKDSV+TMQKLHELAQ+QLF
Sbjct: 181 MEEKVKEIVEIKQRSLAEENQKTLEVLKEREQALQDQLQHAKDSVSTMQKLHELAQNQLF 240

Query: 237 EVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTL 296
           E+RAQS+EER +KQSEVNLLMDEVERAQ+ LLSL+REK +LRSQLQ+AN+E  ++NSD  
Sbjct: 241 ELRAQSEEERASKQSEVNLLMDEVERAQSMLLSLEREKGVLRSQLQTANEETETKNSDNF 300

Query: 297 DSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMK 356
           DSNS LENSL+AKEK ISELN ELHNIETALSNER+QH+NE+KKL A+L EKEAALE+MK
Sbjct: 301 DSNSALENSLNAKEKQISELNMELHNIETALSNERDQHINEVKKLTAMLNEKEAALEEMK 360

Query: 357 KELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEH 416
           KEL+ARPT KMVDDLRKKVKILQAVGYNSIEAEDWEVAT+ EEMSKMESLLLDKNRKMEH
Sbjct: 361 KELKARPTEKMVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEH 420

Query: 417 ELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS--SKDRKGNVF 474
           ELTQLKV LSEKTSLLETAE KIAELTAK+NEQQKL+QKLEDDILKGYS  SKDRKGN  
Sbjct: 421 ELTQLKVTLSEKTSLLETAEQKIAELTAKVNEQQKLVQKLEDDILKGYSSNSKDRKGNFL 480

Query: 475 DDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKI 534
           DDWDLSEAGG E+SE  D++    DQDQSSMLKVICNQRDRFR RLRETEEE+RQLKEKI
Sbjct: 481 DDWDLSEAGGGEVSENTDQRQVSLDQDQSSMLKVICNQRDRFRTRLRETEEEIRQLKEKI 540

Query: 535 GVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMY 594
           GVLT ELEK+KADNV+LYGKIR+VQDYN+EKVISRGSKKYAEDLESGF SD+ESKYKK+Y
Sbjct: 541 GVLTVELEKSKADNVKLYGKIRYVQDYNHEKVISRGSKKYAEDLESGFASDVESKYKKIY 600

Query: 595 EDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTC 654
           EDDINPFAAFSKKERDQRYKELG RDRITLSSGRFLLGNKYARTFAFFYTI LH+LVFTC
Sbjct: 601 EDDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHILVFTC 660

Query: 655 LYRMSALSYLSNGPEEFV--EKTVDLPHA 681
           LYRMSALSYLSNGPEEF+  EK VDLP  
Sbjct: 661 LYRMSALSYLSNGPEEFLVGEKNVDLPRG 689

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118916|ref|XP_002317937.1| predicted protein [Populus trichocarpa] gi|222858610|gb|EEE96157.1| predicted protein [Populus trichocarpa]

 Score = 1164 bits (3012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/691 (84%), Positives = 632/691 (91%), Gaps = 11/691 (1%)

Query: 1   MEAPLGGSDRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRK 60
           MEAP GGS+RDK  T S+SPVS++SNFWKDF+LEKEKS+LDE GL+IAENQENSQKNRRK
Sbjct: 1   MEAPQGGSERDK--TISTSPVSLVSNFWKDFELEKEKSVLDEQGLRIAENQENSQKNRRK 58

Query: 61  LAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 120
           LAESTRDFKKAS +EKL LFNSLLKG+QEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP
Sbjct: 59  LAESTRDFKKASSDEKLGLFNSLLKGFQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 118

Query: 121 ALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEK 180
           ALASI+EQDLKLSELESE+RKMK+ELEE+RTEA HLKNQQ+TIRRLEERNRQLEQQMEEK
Sbjct: 119 ALASISEQDLKLSELESESRKMKVELEEFRTEAAHLKNQQATIRRLEERNRQLEQQMEEK 178

Query: 181 VKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
           VKEIVE+KQR LAEENQKTLE+L+EREQ+LQDQLRQAKDSVAT+QKLHELAQSQLFEVRA
Sbjct: 179 VKEIVEMKQRSLAEENQKTLEVLKEREQSLQDQLRQAKDSVATIQKLHELAQSQLFEVRA 238

Query: 241 QSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNS 300
           QS+EE  AKQSEVN LMDEVERAQTRL SL+REK +LRSQLQSAN+E   +  D  DS S
Sbjct: 239 QSEEEWAAKQSEVNFLMDEVERAQTRLHSLEREKGVLRSQLQSANEEIEDKKGDNSDSTS 298

Query: 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360
            LE+SLS KEK+ISELN ELHNIET L+NEREQH+NEIKKLN LL EKEAALE+MKKELQ
Sbjct: 299 ILESSLSTKEKLISELNMELHNIETTLTNEREQHINEIKKLNILLNEKEAALEEMKKELQ 358

Query: 361 ARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQ 420
           A+PT K+VDDLRKKVKILQAVGYNSIEAEDWEVAT+ EEMSKMESLLLDKNRKMEHELTQ
Sbjct: 359 AKPTEKLVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEHELTQ 418

Query: 421 LKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLS 480
           LKVK+SEK + LETAEGKI ELTAK+NEQQKLIQKLEDDILKGYSSKDRKG++FD WDLS
Sbjct: 419 LKVKISEKATSLETAEGKITELTAKVNEQQKLIQKLEDDILKGYSSKDRKGSLFDAWDLS 478

Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEE---------EVRQLK 531
           EAGG ELSE AD+KH   DQDQSSMLKVICNQRDRFRARLRETEE         EVRQLK
Sbjct: 479 EAGGVELSENADQKHVSVDQDQSSMLKVICNQRDRFRARLRETEEACYMLYNLFEVRQLK 538

Query: 532 EKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYK 591
           EKIGVL A+LEKTKADNV+LYGKIR+VQDYN EKV+SRGSKK+AEDLESGF SD+ESKYK
Sbjct: 539 EKIGVLAADLEKTKADNVKLYGKIRYVQDYNLEKVVSRGSKKHAEDLESGFASDVESKYK 598

Query: 592 KMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLV 651
           K+YEDDINPFAAFSKKERDQRYKELG RDRITLSSGRFLLGNKYARTFAFFYTI LH+LV
Sbjct: 599 KIYEDDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHILV 658

Query: 652 FTCLYRMSALSYLSNGPEEFVEKTVDLPHAL 682
           FTCLYRMSALSYLS+G     +K +DLPHAL
Sbjct: 659 FTCLYRMSALSYLSHGEAFDGDKKLDLPHAL 689

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734183|emb|CBI15430.3| unnamed protein product [Vitis vinifera]

 Score = 1154 bits (2986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/668 (84%), Positives = 633/668 (94%), Gaps = 2/668 (0%)

Query: 16  SSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEE 75
           +SSSP+ V+SNFW++FDLEKE+S+LDE GL+IAENQENSQKNRRKLAESTRDFKKASP+E
Sbjct: 3   ASSSPIPVVSNFWREFDLEKERSVLDEQGLRIAENQENSQKNRRKLAESTRDFKKASPDE 62

Query: 76  KLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSEL 135
           KL+LFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQD+KLSEL
Sbjct: 63  KLNLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDMKLSEL 122

Query: 136 ESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEE 195
           ESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQQMEEKVKEIVE+KQR LAEE
Sbjct: 123 ESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQMEEKVKEIVEMKQRSLAEE 182

Query: 196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNL 255
           NQKTLE+L+ERE+ LQDQLRQAK+SV+ MQKLHELAQSQ+FE+RAQS+E+  AKQSEV+L
Sbjct: 183 NQKTLEVLKERERLLQDQLRQAKESVSNMQKLHELAQSQMFELRAQSEEDTAAKQSEVSL 242

Query: 256 LMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISE 315
           LMDEVERAQT LLSL+REK LLRS+LQSANDE G + SD LDSNS LENSLSAKEKIISE
Sbjct: 243 LMDEVERAQTLLLSLEREKGLLRSKLQSANDENGQKKSDNLDSNSILENSLSAKEKIISE 302

Query: 316 LNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKV 375
           LN ELHNIE  LSNEREQH+NEIK+LNALL EK+ ALE++KKEL ARPT+K+VDDLRKKV
Sbjct: 303 LNMELHNIEITLSNEREQHVNEIKRLNALLNEKDLALEEIKKELLARPTAKLVDDLRKKV 362

Query: 376 KILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETA 435
           KILQAVGYNSIEAEDWEVAT+ EEMSK+ESLLLDKNRKMEHELTQLKVKL+EKTSLLETA
Sbjct: 363 KILQAVGYNSIEAEDWEVATSGEEMSKLESLLLDKNRKMEHELTQLKVKLTEKTSLLETA 422

Query: 436 EGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKH 495
           EGKI ELTAK+NEQQ+LIQKLEDDILKGYSSK+RKG++F+DWDL + G TE S++A++KH
Sbjct: 423 EGKIVELTAKVNEQQRLIQKLEDDILKGYSSKERKGSLFEDWDLLDNGATETSQRAEQKH 482

Query: 496 TYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555
             PDQ+Q+SMLKVICNQRDRFRARLRETEEEV+QLKEKIG+LT ELEKTKADNV+LYGKI
Sbjct: 483 VSPDQEQNSMLKVICNQRDRFRARLRETEEEVKQLKEKIGLLTVELEKTKADNVKLYGKI 542

Query: 556 RFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKE 615
           R+VQDYN EKV+SRGSKK++EDLESGF+SD+ESKYKK+YEDDINPFAAFSKKERDQRYKE
Sbjct: 543 RYVQDYNLEKVVSRGSKKHSEDLESGFSSDVESKYKKIYEDDINPFAAFSKKERDQRYKE 602

Query: 616 LGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSALSYLSNGPEEFV--E 673
           LGIRD+ITLSSGRFLLGN+YARTFAFFYTI LHVLVFTCLYRMSALS+LSNGPEE +  +
Sbjct: 603 LGIRDKITLSSGRFLLGNRYARTFAFFYTIGLHVLVFTCLYRMSALSHLSNGPEESLIGQ 662

Query: 674 KTVDLPHA 681
           K ++LPHA
Sbjct: 663 KIINLPHA 670

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531222|ref|XP_003534177.1| PREDICTED: protein CASP-like [Glycine max]

 Score = 1148 bits (2970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/677 (85%), Positives = 629/677 (92%), Gaps = 4/677 (0%)

Query: 9   DRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDF 68
           +RDK    SSSP+SV+S FWKDF+LEKEKS+LDE GL+IAENQENSQ+NRRKLAE+TRDF
Sbjct: 15  ERDKSTAPSSSPISVVSAFWKDFELEKEKSILDEQGLRIAENQENSQRNRRKLAENTRDF 74

Query: 69  KKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQ 128
           KKASPE+KLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPAL SIAEQ
Sbjct: 75  KKASPEDKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALVSIAEQ 134

Query: 129 DLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIK 188
           DLK+SELESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQQMEEKVKEIVEIK
Sbjct: 135 DLKISELESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQMEEKVKEIVEIK 194

Query: 189 QRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVA 248
           QR LAEENQKT+E+L+EREQALQDQL+ AKDSV+TMQKLHELAQ+QLFE+RAQS+EER +
Sbjct: 195 QRSLAEENQKTMEVLKEREQALQDQLQHAKDSVSTMQKLHELAQNQLFELRAQSEEERAS 254

Query: 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSA 308
           KQSEVNLLMDEVERAQ+ LLSL+REK +LR+QLQ+AN+E  ++NSD  DSNS LENSL+A
Sbjct: 255 KQSEVNLLMDEVERAQSMLLSLEREKGVLRNQLQTANEETETKNSDNFDSNSALENSLNA 314

Query: 309 KEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMV 368
           KEK IS+LN ELHNIETALSNER+QH+NE+KKL A+L EKEAALE+MKKEL+ARPT KMV
Sbjct: 315 KEKQISDLNMELHNIETALSNERDQHINEVKKLTAMLNEKEAALEEMKKELKARPTEKMV 374

Query: 369 DDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEK 428
           DDLRKKVKILQAVGYNSIEAEDWEVAT+ EEMSKMESLLLDKNRKMEHELTQLKV LSEK
Sbjct: 375 DDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEHELTQLKVTLSEK 434

Query: 429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS--SKDRKGNVFDDWDLSEAGGTE 486
           TS+LETAE KIAELTAK NEQQKLIQKLEDDILKGYS  SKDRKGN  DDWDLSEAGG E
Sbjct: 435 TSILETAEQKIAELTAKSNEQQKLIQKLEDDILKGYSSNSKDRKGNFLDDWDLSEAGGGE 494

Query: 487 LSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546
           +SE  D++    DQDQSSMLKVICNQRDRFR RLRETEEE+RQLKEKIGVLT ELEK+K 
Sbjct: 495 VSENTDQRQVSLDQDQSSMLKVICNQRDRFRTRLRETEEEIRQLKEKIGVLTVELEKSKV 554

Query: 547 DNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSK 606
           DNV+LYGKIR+VQDYN+EKV+SRGSKKYAEDLESGF SD+ESKYKK+YEDDINPFAAFSK
Sbjct: 555 DNVKLYGKIRYVQDYNHEKVVSRGSKKYAEDLESGFMSDVESKYKKIYEDDINPFAAFSK 614

Query: 607 KERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSALSYLSN 666
           KERDQRYKELG RDRITLSSGRFLLGNKYARTFAFFYTI LH+LVFTCLYRMSALSYLSN
Sbjct: 615 KERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHILVFTCLYRMSALSYLSN 674

Query: 667 GPEEFV--EKTVDLPHA 681
           GPEEF+  EK VDLP  
Sbjct: 675 GPEEFLVGEKNVDLPRG 691

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521095|ref|XP_003630836.1| Protein CASP [Medicago truncatula] gi|355524858|gb|AET05312.1| Protein CASP [Medicago truncatula]

 Score = 1122 bits (2902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/688 (81%), Positives = 624/688 (90%), Gaps = 11/688 (1%)

Query: 1   MEAPLGGSDRDKPNTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRK 60
           ME+P  GS+RD  N    SP+SV+S FWKDFDLEKEKS+LDE GL+IAENQENSQKNRRK
Sbjct: 1   MESPPSGSERDTTN----SPISVVSAFWKDFDLEKEKSVLDEQGLRIAENQENSQKNRRK 56

Query: 61  LAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 120
           LAESTR+FKKASPE+K SLFN+LLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP
Sbjct: 57  LAESTRNFKKASPEDKSSLFNALLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYP 116

Query: 121 ALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEK 180
           ALAS+AEQDLKLSELESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEER+RQLEQQMEEK
Sbjct: 117 ALASVAEQDLKLSELESENRKMKVELEEFRTEATHLKNQQATIRRLEERSRQLEQQMEEK 176

Query: 181 VKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
           VKEIVEIK R LAEENQKTLEIL+EREQ LQDQL+ AK+SV+ M+KLHELAQ+QLFE+RA
Sbjct: 177 VKEIVEIKHRNLAEENQKTLEILKEREQLLQDQLQSAKESVSNMKKLHELAQNQLFELRA 236

Query: 241 QSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNS 300
           QS+EER AKQ+E NLLMDEVERAQT LL L+REK +LRSQLQ+AN+++ ++ SD LDSN+
Sbjct: 237 QSEEERAAKQAEANLLMDEVERAQTMLLGLEREKGVLRSQLQTANEDSETKKSDNLDSNN 296

Query: 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360
            LENSL AKEK+ISELN ELHNIET LSNERE+H+N++KK  A+L EKEA++  MKKELQ
Sbjct: 297 ALENSLIAKEKLISELNMELHNIETTLSNEREEHINDVKKFTAMLNEKEASIVAMKKELQ 356

Query: 361 ARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQ 420
            RPT K+VDDLRKKVKILQAVGYNSIEAEDWEVAT+ EEMSKMESLLLDKNRKMEHELTQ
Sbjct: 357 TRPTEKIVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEHELTQ 416

Query: 421 LKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY--SSKDRKGNVFDDWD 478
           LKVKLSEKTS LETAE K+AEL+AK+NEQQKLIQKLEDDI KGY  SSKD KG   DDWD
Sbjct: 417 LKVKLSEKTSSLETAEQKVAELSAKVNEQQKLIQKLEDDISKGYNSSSKDHKGTFLDDWD 476

Query: 479 LSEAGGTELSEK--ADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGV 536
           LSEA  +E+SE    D++H   DQDQSSMLKVIC+QRDRFR RLRETEEE+RQLKEKIGV
Sbjct: 477 LSEANRSEVSEHQNMDQRHAL-DQDQSSMLKVICSQRDRFRTRLRETEEEIRQLKEKIGV 535

Query: 537 LTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYED 596
           LTAELEKTKADNV+LYGKIR+VQDYN EKV+SRGSKKYAEDLESGFTSD+ESKYKK+YE+
Sbjct: 536 LTAELEKTKADNVKLYGKIRYVQDYNVEKVVSRGSKKYAEDLESGFTSDVESKYKKIYEE 595

Query: 597 DINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLY 656
           DINPFAAFSKKERDQRYKELG RDRITLSSGRFLLGNKYARTFAFFYTI LHVLVFTCLY
Sbjct: 596 DINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHVLVFTCLY 655

Query: 657 RMSALSYLSNGPEEFV--EKTVDLPHAL 682
           RMSALSYLS+G +E +  E+T+DLP  L
Sbjct: 656 RMSALSYLSHGSDETLAGERTIDLPRGL 683

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401903|ref|NP_566611.1| protein CASP [Arabidopsis thaliana] gi|85540967|sp|Q9LS42.2|CASP_ARATH RecName: Full=Protein CASP gi|15810373|gb|AAL07074.1| unknown protein [Arabidopsis thaliana] gi|23296990|gb|AAN13218.1| unknown protein [Arabidopsis thaliana] gi|332642581|gb|AEE76102.1| protein CASP [Arabidopsis thaliana]

 Score = 1109 bits (2869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/689 (79%), Positives = 620/689 (89%), Gaps = 7/689 (1%)

Query: 1   MEAPLGGSDRDKPNTSSSSP-----VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQ 55
           ME    GS+RDK    SSS      + V++NFWK+FDLEKEKSLLDE GL+IAENQENSQ
Sbjct: 1   MEVSQDGSERDKTPPPSSSSSSSSPIPVVTNFWKEFDLEKEKSLLDEQGLRIAENQENSQ 60

Query: 56  KNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEA 115
           KNRRKLAESTRDFKKASPE KLS+FNSLLKGYQEEVDN+TKRAKFGENAFLNIYQKLYEA
Sbjct: 61  KNRRKLAESTRDFKKASPENKLSMFNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEA 120

Query: 116 PDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQ 175
           PDP+PALASIAEQD KLSE+ESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQ
Sbjct: 121 PDPFPALASIAEQDRKLSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQ 180

Query: 176 QMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235
           QMEEK+KE+VEIKQR LAEENQKT+E+L++REQALQDQLRQAKDSV+TMQKLHELAQ+QL
Sbjct: 181 QMEEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDSVSTMQKLHELAQNQL 240

Query: 236 FEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDT 295
           FE+RAQSDEE   KQSEV+LLMDEVERAQTRLL+L+REK  LRSQLQ+AN++  ++ SD 
Sbjct: 241 FELRAQSDEETAGKQSEVSLLMDEVERAQTRLLTLEREKGHLRSQLQTANEDTDNKKSDN 300

Query: 296 LDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDM 355
           +DSNS LENSL+AKEKIISELN E+HN+ETAL+NERE H+ EIKKLN+LL +K+  +E+M
Sbjct: 301 IDSNSMLENSLTAKEKIISELNMEIHNVETALANERESHVAEIKKLNSLLNKKDTIIEEM 360

Query: 356 KKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKME 415
           KKELQ RP++K+VDDLRKKVKILQAVGYNSIEAEDW+ AT  EEMSKMESLLLDKNRKME
Sbjct: 361 KKELQERPSAKLVDDLRKKVKILQAVGYNSIEAEDWDAATTGEEMSKMESLLLDKNRKME 420

Query: 416 HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFD 475
           HE+TQLKV+LSEK SLLE AE K  ELTAK+NEQQ+LIQKLEDDILKGY SK+RKG +FD
Sbjct: 421 HEVTQLKVQLSEKASLLEKAEAKGEELTAKVNEQQRLIQKLEDDILKGYGSKERKGALFD 480

Query: 476 DWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIG 535
           +W+ SEAG  E SE  D+KH   +QDQSSMLKVIC+QRDRFRARLRETEEE+R+LKEKIG
Sbjct: 481 EWEFSEAGVAEQSEPMDQKHVPSEQDQSSMLKVICSQRDRFRARLRETEEEIRRLKEKIG 540

Query: 536 VLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYE 595
            LT ELEKTKADNV+LYGKIR+VQDYN++KV+SRGSKKY EDLESGF+SD+ESKYKK+YE
Sbjct: 541 FLTDELEKTKADNVKLYGKIRYVQDYNHDKVVSRGSKKYVEDLESGFSSDVESKYKKIYE 600

Query: 596 DDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCL 655
           DDINPFAAFSKKER+QR K+LGIRDRITLSSGRFLLGNKYARTFAFFYTI LHVLVFTCL
Sbjct: 601 DDINPFAAFSKKEREQRIKDLGIRDRITLSSGRFLLGNKYARTFAFFYTIGLHVLVFTCL 660

Query: 656 YRMSALSYLSNGPEE--FVEKTVDLPHAL 682
           YRMSA SYLS+G EE    E T +LPH L
Sbjct: 661 YRMSAYSYLSHGAEETLMTEATTNLPHGL 689

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830502|ref|XP_002883133.1| hypothetical protein ARALYDRAFT_318610 [Arabidopsis lyrata subsp. lyrata] gi|297328973|gb|EFH59392.1| hypothetical protein ARALYDRAFT_318610 [Arabidopsis lyrata subsp. lyrata]

 Score = 1105 bits (2859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/705 (78%), Positives = 624/705 (88%), Gaps = 23/705 (3%)

Query: 1   MEAPLGGSDRDKPNTSSSSP----VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQK 56
           ME    GS+RDK    SSS     + V++NFWK+FDLEKEKSLLDE GLKIAENQENSQK
Sbjct: 1   MEVLQDGSERDKTPPPSSSSSSSPIPVVTNFWKEFDLEKEKSLLDEQGLKIAENQENSQK 60

Query: 57  NRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAP 116
           NRRKLAESTRDFKKASPE+KLS+FNSLLKGYQEEVDN+TKRAKFGENAFLNIYQKLYEAP
Sbjct: 61  NRRKLAESTRDFKKASPEDKLSMFNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEAP 120

Query: 117 DPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQ 176
           DP+PALASIA+QD KLSE+ESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQQ
Sbjct: 121 DPFPALASIADQDRKLSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQ 180

Query: 177 MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF 236
           MEEK+KE+VEIKQR LAEENQKT+E+L++REQALQDQLRQAKDSV+TMQKLHELAQSQLF
Sbjct: 181 MEEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDSVSTMQKLHELAQSQLF 240

Query: 237 EVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTL 296
           E+RAQSDEE  AKQSEV+LLMDEVERAQTRLL+L+REK  LRSQLQ+AN++  ++ SD +
Sbjct: 241 EIRAQSDEETAAKQSEVSLLMDEVERAQTRLLTLEREKGHLRSQLQTANEDTDNKKSDNV 300

Query: 297 DSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALL----------- 345
           DSNS LENSL+AKEKIISELN E+HN+ETAL+NERE H+ EIKKLN+LL           
Sbjct: 301 DSNSMLENSLTAKEKIISELNMEIHNVETALANERESHVAEIKKLNSLLNKKNFYFVLKP 360

Query: 346 ------IEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEE 399
                 + ++  +E+MKKEL+ RP++K+VDDLRKKVKILQAVGYNSIEAEDW+ AT  EE
Sbjct: 361 TVILLVLNQDTVIEEMKKELRERPSAKLVDDLRKKVKILQAVGYNSIEAEDWDAATTGEE 420

Query: 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDD 459
           MSKMESLLLDKNRKMEHE+TQLKV+LSEKTSLLE AE K  ELTAK+NEQQ+LIQKLEDD
Sbjct: 421 MSKMESLLLDKNRKMEHEVTQLKVQLSEKTSLLEKAEAKGEELTAKVNEQQRLIQKLEDD 480

Query: 460 ILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRAR 519
           ILKGYSSK+RKG +FD+W+ SEAG  E SE  D+KH   DQDQSSMLKVIC+QRDRFRAR
Sbjct: 481 ILKGYSSKERKGALFDEWEFSEAGVAEQSEPMDQKHIPSDQDQSSMLKVICSQRDRFRAR 540

Query: 520 LRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLE 579
           LRETEEE+R+LKEKIG LT ELEKTKADNV+LYGKIR+VQDYN++KV+SRGSKKY EDLE
Sbjct: 541 LRETEEEIRRLKEKIGFLTDELEKTKADNVKLYGKIRYVQDYNHDKVVSRGSKKYVEDLE 600

Query: 580 SGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTF 639
           SGF+SD+ESKYKK+YEDDINPFAAFSKKER+QR K+LGIRDRITLSSGRFLLGNKYARTF
Sbjct: 601 SGFSSDVESKYKKIYEDDINPFAAFSKKEREQRIKDLGIRDRITLSSGRFLLGNKYARTF 660

Query: 640 AFFYTILLHVLVFTCLYRMSALSYLSNGPEE--FVEKTVDLPHAL 682
           AFFYTI LHVLVFTCLYRMSA SYLS+G EE    E T +LPH L
Sbjct: 661 AFFYTIGLHVLVFTCLYRMSAYSYLSHGAEETLMTEATTNLPHGL 705

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442592|ref|XP_004139065.1| PREDICTED: protein CASP-like [Cucumis sativus]

 Score = 1102 bits (2851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/686 (82%), Positives = 625/686 (91%), Gaps = 5/686 (0%)

Query: 1   MEAPLGGSDRDKP--NTSSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNR 58
           ME+P GGS+RDKP  ++SS+S VSV+S+FWK+FDLEKEKS LDE GL+IAENQENSQKNR
Sbjct: 1   MESPQGGSERDKPPNSSSSTSAVSVVSSFWKEFDLEKEKSALDEQGLRIAENQENSQKNR 60

Query: 59  RKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDP 118
           RKLAESTRDFKKA PEEKL+LF+SLLK YQEEVDNLTKRAKFGENAFLNIYQKLYEAPDP
Sbjct: 61  RKLAESTRDFKKAQPEEKLNLFSSLLKSYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDP 120

Query: 119 YPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQME 178
           YPALASI EQDLKLSELESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQQME
Sbjct: 121 YPALASIGEQDLKLSELESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQME 180

Query: 179 EKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEV 238
           EK+KEIVEIKQR LAEE    L ++  RE+ LQDQLR+ ++SV+ MQKLHE AQSQLFE+
Sbjct: 181 EKIKEIVEIKQRSLAEEGYFILFLIMFRERLLQDQLRREQESVSNMQKLHERAQSQLFEL 240

Query: 239 RAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDS 298
           RAQSDEER AKQSEV LLMDEVERAQTRLLSL+REK LLRSQLQSAND+ G++ SD LD 
Sbjct: 241 RAQSDEERAAKQSEVTLLMDEVERAQTRLLSLEREKGLLRSQLQSANDDTGNKKSDNLDL 300

Query: 299 NSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKE 358
           NS LENSLSAKEKIISELN ELHNIET LS+EREQH+ EIK LNAL+ EKE A+++MK+E
Sbjct: 301 NSVLENSLSAKEKIISELNMELHNIETTLSSEREQHIIEIKNLNALINEKETAIDEMKRE 360

Query: 359 LQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHEL 418
           LQ+RPT KMVDDLRKKVKILQAVGYNSIEAEDWEVAT+ EEMSKMESLLLDKNRKMEHEL
Sbjct: 361 LQSRPTEKMVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEHEL 420

Query: 419 TQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWD 478
           TQ KVKLSEK+SLL+TAE KIAELT K+ EQQKLIQKLE+DILKGY+SKD+KG++FD+WD
Sbjct: 421 TQFKVKLSEKSSLLDTAESKIAELTEKVVEQQKLIQKLEEDILKGYNSKDQKGSLFDEWD 480

Query: 479 LSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLT 538
           LSEA G ELSE  D+KH   DQDQSSMLKVIC+QRDRFRARLRE EEE+RQLKEKIG LT
Sbjct: 481 LSEARG-ELSENVDRKHFPLDQDQSSMLKVICSQRDRFRARLREAEEEIRQLKEKIGQLT 539

Query: 539 AELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDI 598
            +LEKTKADNV+LYGKIR+VQDYN EKV+SRGSKK+AEDLESG  SD+ESKYKK+YEDDI
Sbjct: 540 VDLEKTKADNVKLYGKIRYVQDYNLEKVVSRGSKKHAEDLESGSMSDVESKYKKIYEDDI 599

Query: 599 NPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRM 658
           NPFAAFS+KE+DQRYKELG RDRITLSSGRFLLGNKYAR FAFFYTI LH+LVFTCLYRM
Sbjct: 600 NPFAAFSRKEKDQRYKELGFRDRITLSSGRFLLGNKYARAFAFFYTIGLHILVFTCLYRM 659

Query: 659 SALSYLSNGPEEFV--EKTVDLPHAL 682
           SALS+LSNGPEEF+  +K V+LPH L
Sbjct: 660 SALSHLSNGPEEFLVGDKHVNLPHGL 685

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	682
TAIR|locus:2095012	689	CASP "AT3G18480" [Arabidopsis	1.0	0.989	0.737	1.2e-262
UNIPROTKB|H0YMA9	692	CUX1 "Protein CASP" [Homo sapi	0.865	0.852	0.323	2.5e-81
UNIPROTKB|Q13948	678	CUX1 "Protein CASP" [Homo sapi	0.865	0.870	0.323	2.5e-81
MGI|MGI:88568	678	Cux1 "cut-like homeobox 1" [Mu	0.863	0.868	0.315	7.6e-80
UNIPROTKB|F1NGM7	658	Gga.43632 "Uncharacterized pro	0.860	0.892	0.316	9.7e-80
ZFIN|ZDB-GENE-040801-260	672	cux1b "cut-like homeobox 1b" [	0.890	0.903	0.305	4.8e-78
UNIPROTKB|H0YL76	633	CUX1 "Protein CASP" [Homo sapi	0.812	0.875	0.323	1.9e-74
UNIPROTKB|F1P4L9	620	Gga.43632 "Uncharacterized pro	0.807	0.888	0.313	1.6e-72
DICTYBASE|DDB_G0283375	861	scdA "similar to CCAAT displac	0.593	0.470	0.315	1.3e-68
SGD|S000001662	679	COY1 "Golgi membrane protein w	0.856	0.860	0.265	1.5e-51

TAIR|locus:2095012 CASP "AT3G18480" [Arabidopsis thaliana (taxid:3702)]

 Score = 2527 (894.6 bits), Expect = 1.2e-262, P = 1.2e-262
 Identities = 508/689 (73%), Positives = 573/689 (83%)

Query:     1 MEAPLGGSDRDK---PNTXXXXXXXX--XXNFWXXXXXXXXXXXXXXXXXXIAENQENSQ 55
             ME    GS+RDK   P++            NFW                  IAENQENSQ
Sbjct:     1 MEVSQDGSERDKTPPPSSSSSSSSPIPVVTNFWKEFDLEKEKSLLDEQGLRIAENQENSQ 60

Query:    56 KNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEA 115
             KNRRKLAESTRDFKKASPE KLS+FNSLLKGYQEEVDN+TKRAKFGENAFLNIYQKLYEA
Sbjct:    61 KNRRKLAESTRDFKKASPENKLSMFNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEA 120

Query:   116 PDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIXXXXXXXXXXXX 175
             PDP+PALASIAEQD KLSE+ESENRKMK+ELEE+RTEATHLKNQQ+TI            
Sbjct:   121 PDPFPALASIAEQDRKLSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQ 180

Query:   176 XXXXXXXXXXXXXXRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235
                           R LAEENQKT+E+L++REQALQDQLRQAKDSV+TMQKLHELAQ+QL
Sbjct:   181 QMEEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDSVSTMQKLHELAQNQL 240

Query:   236 FEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDT 295
             FE+RAQSDEE   KQSEV+LLMDEVERAQTRLL+L+REK  LRSQLQ+AN++  ++ SD 
Sbjct:   241 FELRAQSDEETAGKQSEVSLLMDEVERAQTRLLTLEREKGHLRSQLQTANEDTDNKKSDN 300

Query:   296 LDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDM 355
             +DSNS LENSL+AKEKIISELN E+HN+ETAL+NERE H+ EIKKLN+LL +K+  +E+M
Sbjct:   301 IDSNSMLENSLTAKEKIISELNMEIHNVETALANERESHVAEIKKLNSLLNKKDTIIEEM 360

Query:   356 KKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKME 415
             KKELQ RP++K+VDDLRKKVKILQAVGYNSIEAEDW+ AT  EEMSKMESLLLDKNRKME
Sbjct:   361 KKELQERPSAKLVDDLRKKVKILQAVGYNSIEAEDWDAATTGEEMSKMESLLLDKNRKME 420

Query:   416 HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFD 475
             HE+TQLKV+LSEK SLLE AE K  ELTAK+NEQQ+LIQKLEDDILKGY SK+RKG +FD
Sbjct:   421 HEVTQLKVQLSEKASLLEKAEAKGEELTAKVNEQQRLIQKLEDDILKGYGSKERKGALFD 480

Query:   476 DWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIG 535
             +W+ SEAG  E SE  D+KH   +QDQSSMLKVIC+QRDRFRARLRETEEE+R+LKEKIG
Sbjct:   481 EWEFSEAGVAEQSEPMDQKHVPSEQDQSSMLKVICSQRDRFRARLRETEEEIRRLKEKIG 540

Query:   536 VLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYE 595
              LT ELEKTKADNV+LYGKIR+VQDYN++KV+SRGSKKY EDLESGF+SD+ESKYKK+YE
Sbjct:   541 FLTDELEKTKADNVKLYGKIRYVQDYNHDKVVSRGSKKYVEDLESGFSSDVESKYKKIYE 600

Query:   596 DDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCL 655
             DDINPFAAFSKKER+QR K+LGIRDRITLSSGRFLLGNKYARTFAFFYTI LHVLVFTCL
Sbjct:   601 DDINPFAAFSKKEREQRIKDLGIRDRITLSSGRFLLGNKYARTFAFFYTIGLHVLVFTCL 660

Query:   656 YRMSALSYLSNGPEE--FVEKTVDLPHAL 682
             YRMSA SYLS+G EE    E T +LPH L
Sbjct:   661 YRMSAYSYLSHGAEETLMTEATTNLPHGL 689

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|H0YMA9 CUX1 "Protein CASP" [Homo sapiens (taxid:9606)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 205/633 (32%), Positives = 339/633 (53%)

Query:    47 IAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFL 106
             +A  Q+ S+++R++L E +R+FKK +PE+       LLK +Q E+D L+KR+K  E AFL
Sbjct:    45 LANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAEAAFL 104

Query:   107 NIYQKLYEAPDPYPALASIAEQDLK---LSELESENRKMKIELEEYRTEATHLKNQQSTI 163
             N+Y++L + PDP PAL    +  LK   L ++E+EN+K++  LEEY  E   +KNQ+ TI
Sbjct:   105 NVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTI 164

Query:   164 XXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT 223
                                       + L  +  +    LQE + +   +L +A+  V +
Sbjct:   165 KALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS 224

Query:   224 MQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283
             +Q   E  +++LF+++ + DEE  AK  E+ ++M ++ERA  R    QRE + LR QL S
Sbjct:   225 LQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSS 284

Query:   284 AND--EAGSRNSDTLD--------SNSYLENSLSAKEKIISELNSELHNIETALSNEREQ 333
             AN   +  S+     D        + S LE  L+AKE+ I++L  ++  ++ +L+  RE 
Sbjct:   285 ANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLREN 344

Query:   334 HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEV 393
               ++I +L   L  K + L+ ++++L+ +      ++++K++ IL+     S+E    E 
Sbjct:   345 SASQISQLEQQLSAKNSTLKQLEEKLKGQAD---YEEVKKELNILK-----SMEFAPSEG 396

Query:   394 ATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI 453
             A   +    +E LLL+KNR ++ E   L++  S+ +      + +I E  A   EQ++LI
Sbjct:   397 AGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGRCAELQVRITEAVATATEQRELI 456

Query:   454 QKLEDD--ILKGYSSKDRKGNVFDDWD-----LSEAGGTELSEKADKKHTYPDQDQSSML 506
              +LE D  I++     D +G      +     + EA        A      P+    S+L
Sbjct:   457 ARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAPASGALPEGQVDSLL 516

Query:   507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKV 566
              +I +QR+RFRAR +E E E R  +  +  L +EL+  +ADN++L+ KI+F+Q Y     
Sbjct:   517 SIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPG--- 573

Query:   567 ISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSS 626
               RGS         G + D E +Y   YE+ ++PF++FSK+ER ++Y  L   D+ TLS 
Sbjct:   574 --RGS---------G-SDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPWDKATLSM 621

Query:   627 GRFLLGNKYARTFAFFYTILLHVLVFTCLYRMS 659
             GR +L NK ART  FFYT+ LH LVF  LY+++
Sbjct:   622 GRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLA 654

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

UNIPROTKB|Q13948 CUX1 "Protein CASP" [Homo sapiens (taxid:9606)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 205/633 (32%), Positives = 339/633 (53%)

Query:    47 IAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFL 106
             +A  Q+ S+++R++L E +R+FKK +PE+       LLK +Q E+D L+KR+K  E AFL
Sbjct:    31 LANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAEAAFL 90

Query:   107 NIYQKLYEAPDPYPALASIAEQDLK---LSELESENRKMKIELEEYRTEATHLKNQQSTI 163
             N+Y++L + PDP PAL    +  LK   L ++E+EN+K++  LEEY  E   +KNQ+ TI
Sbjct:    91 NVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTI 150

Query:   164 XXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT 223
                                       + L  +  +    LQE + +   +L +A+  V +
Sbjct:   151 KALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS 210

Query:   224 MQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283
             +Q   E  +++LF+++ + DEE  AK  E+ ++M ++ERA  R    QRE + LR QL S
Sbjct:   211 LQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSS 270

Query:   284 AND--EAGSRNSDTLD--------SNSYLENSLSAKEKIISELNSELHNIETALSNEREQ 333
             AN   +  S+     D        + S LE  L+AKE+ I++L  ++  ++ +L+  RE 
Sbjct:   271 ANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLREN 330

Query:   334 HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEV 393
               ++I +L   L  K + L+ ++++L+ +      ++++K++ IL+     S+E    E 
Sbjct:   331 SASQISQLEQQLSAKNSTLKQLEEKLKGQAD---YEEVKKELNILK-----SMEFAPSEG 382

Query:   394 ATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI 453
             A   +    +E LLL+KNR ++ E   L++  S+ +      + +I E  A   EQ++LI
Sbjct:   383 AGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGRCAELQVRITEAVATATEQRELI 442

Query:   454 QKLEDD--ILKGYSSKDRKGNVFDDWD-----LSEAGGTELSEKADKKHTYPDQDQSSML 506
              +LE D  I++     D +G      +     + EA        A      P+    S+L
Sbjct:   443 ARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAPASGALPEGQVDSLL 502

Query:   507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKV 566
              +I +QR+RFRAR +E E E R  +  +  L +EL+  +ADN++L+ KI+F+Q Y     
Sbjct:   503 SIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPG--- 559

Query:   567 ISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSS 626
               RGS         G + D E +Y   YE+ ++PF++FSK+ER ++Y  L   D+ TLS 
Sbjct:   560 --RGS---------G-SDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPWDKATLSM 607

Query:   627 GRFLLGNKYARTFAFFYTILLHVLVFTCLYRMS 659
             GR +L NK ART  FFYT+ LH LVF  LY+++
Sbjct:   608 GRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLA 640

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

MGI|MGI:88568 Cux1 "cut-like homeobox 1" [Mus musculus (taxid:10090)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 200/634 (31%), Positives = 337/634 (53%)

Query:    47 IAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFL 106
             +A  Q+ S+++R++L E +R+FKK +PE+       LLK +Q E+D L+KR+K  E AFL
Sbjct:    31 LANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSKEAEAAFL 90

Query:   107 NIYQKLYEAPDPYPALASIAEQ-DLK---LSELESENRKMKIELEEYRTEATHLKNQQST 162
              +Y++L + PDP PAL  + +Q ++K   L ++E+EN+K++  LEEY  E   +KNQ+ T
Sbjct:    91 TVYKRLIDVPDPVPAL-DVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVT 149

Query:   163 IXXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKTLEILQEREQALQDQLRQAKDSVA 222
             I                          + L  +  +    LQE + +   +L +A+  + 
Sbjct:   150 IKALKEKIREYEQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQ 209

Query:   223 TMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282
             T+Q   E  +++LF+++ + DEE  AK  E+ ++M ++ERA  R    QRE + LR QL 
Sbjct:   210 TLQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLS 269

Query:   283 SAND--EAGSRNSDTLD--------SNSYLENSLSAKEKIISELNSELHNIETALSNERE 332
             SAN   +  S+     D        + S LE  L+AKE+ I++L  ++  ++ +L+  RE
Sbjct:   270 SANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRE 329

Query:   333 QHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWE 392
                ++I +L   L  K + L+ ++++L+ +      ++++K++  L+     S+E    E
Sbjct:   330 NSASQISQLEQQLNAKNSTLKQLEEKLKGQAD---YEEVKKELNTLK-----SMEFAPSE 381

Query:   393 VATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKL 452
              A   +    +E LLL+KNR ++ E   L++  S+ +      +  + E TAK  EQ++L
Sbjct:   382 GAGTQDSTKPLEVLLLEKNRSLQSENATLRISNSDLSGRCAELQIHLTEATAKAVEQKEL 441

Query:   453 IQKLEDDI--LKGYSSKDRKGNVFDDWD-----LSEAGGTELSEKADKKHTYPDQDQSSM 505
             I +LE D+  ++     D +G      +     + EA             T P+    S+
Sbjct:   442 IARLEQDLSTIQSIQRPDAEGASEQGLEKIPEPIKEATALFYGPSMSSSGTLPEGQVDSL 501

Query:   506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEK 565
             L +I +QR+RFR R +E E E R  +  I  L +EL+  +ADN++L+ KI+F+Q Y    
Sbjct:   502 LSIISSQRERFRTRNQELEAESRMAQHTIQALQSELDSLRADNIKLFEKIKFLQSYPGRG 561

Query:   566 VISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLS 625
             +   GS             D E +Y   YE+ ++PF++FSK+ER ++Y  L   D+ TL 
Sbjct:   562 I---GS------------DDTELRYSSQYEERLDPFSSFSKRERQRKYLGLSPWDKATLG 606

Query:   626 SGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMS 659
              GR +L NK ART  FFYT+ LH LVF  LY+++
Sbjct:   607 MGRLILSNKTARTIGFFYTLFLHCLVFLVLYKLA 640

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000139 "Golgi membrane" evidence=ISO

GO:0000301 "retrograde transport, vesicle recycling within Golgi" evidence=ISO

GO:0001822 "kidney development" evidence=IGI

GO:0003677 "DNA binding" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0030324 "lung development" evidence=IMP

GO:0030674 "protein binding, bridging" evidence=ISO

GO:0042491 "auditory receptor cell differentiation" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|F1NGM7 Gga.43632 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 201/635 (31%), Positives = 340/635 (53%)

Query:    47 IAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFL 106
             +A  Q+ S+++R+KL E +R+FKK +PE+       LLK +Q E+D L KR+K  E AFL
Sbjct:    11 LANRQDESEQSRKKLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALGKRSKEAEAAFL 70

Query:   107 NIYQKLYEAPDPYPALASIAEQDLKLS---ELESENRKMKIELEEYRTEATHLKNQQSTI 163
             N+Y++L + PDP PAL    +  LK+    ++E+EN+K++  LEEY  E   +KNQ+ TI
Sbjct:    71 NVYKRLIDVPDPVPALDLGQQLQLKVQRMHDIETENQKLRETLEEYNKEFAEVKNQEVTI 130

Query:   164 XXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT 223
                                       + L  +  +    LQE + +   +L +A+  V  
Sbjct:   131 KALKEKIREYEQTLKNQAENIALEKEQKLQNDFAEKERKLQETQMSTASKLEEAEHKVQA 190

Query:   224 MQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283
             +Q   E  +++LF+++ + DEE  AK  E+ ++M ++ERA  R    QRE + LR QL S
Sbjct:   191 LQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSS 250

Query:   284 AND--EAGSRNSDTLD--------SNSYLENSLSAKEKIISELNSELHNIETALSNEREQ 333
             AN   +  ++     D        + S LE  L+AKE+ I++L  ++  ++ +L+  RE 
Sbjct:   251 ANKSLQLATQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQGSLTKLREN 310

Query:   334 HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEV 393
               ++I +L   L  K + L+ ++++L+ +      ++++K++ IL+++ +   E+     
Sbjct:   311 SSSQISQLEQQLTAKNSTLKQLEEKLKGQAD---YEEVKKELNILKSMEFAPPES----- 362

Query:   394 ATNDEEMSK-MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKL 452
              +  ++ SK +E LLL+KNR ++ E   L++  S+ +      + ++ E  + +  Q++L
Sbjct:   363 -SGAQDASKPLEVLLLEKNRSLQSENATLRITNSDLSVRCAELQIQLTEAVSGLAGQKEL 421

Query:   453 IQKLEDDI-----LKGYSSKDRKGNVFDDWD-----LSEAGGTELSEKADKKHTYPDQDQ 502
             + KLE D+     L      D +G      +     + EA              +P+   
Sbjct:   422 VAKLEHDLSTIQALSAVHRPDAEGAAIPSLEKIPEPIKEATALFYGHPPSPSAPFPEGQV 481

Query:   503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYN 562
              S+L +I +QR+RFRAR +E E E R ++  +  L +EL+  +ADN++LY KI+F+Q Y 
Sbjct:   482 DSLLSIISSQRERFRARNQELEGENRMMQHTVHALQSELDNLRADNIKLYEKIKFLQSYP 541

Query:   563 NEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRI 622
                   RGS +           D E +Y   YE+ ++PF++FS+KER ++Y  L   D+ 
Sbjct:   542 G-----RGSSR----------DDTELRYSSQYEERLDPFSSFSRKERQRKYLSLSPWDKA 586

Query:   623 TLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYR 657
             TLS GR +L NK ART AFFYT+LLH LVF  LY+
Sbjct:   587 TLSMGRLILSNKTARTVAFFYTLLLHCLVFLVLYK 621

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

ZFIN|ZDB-GENE-040801-260 cux1b "cut-like homeobox 1b" [Danio rerio (taxid:7955)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 199/652 (30%), Positives = 345/652 (52%)

Query:    27 FWXXXXXXXXXXXXXXXXXXIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKG 86
             FW                  +A  Q++S+++R+KL + +R+FKK +PE+   L   LLK 
Sbjct:    11 FWKRFDLVQLQRELDSTATLLASRQDDSEQSRKKLIDQSREFKKNTPEDLRKLVAPLLKS 70

Query:    87 YQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALA---SIAEQDLKLSELESENRKMK 143
             +Q E+D L+KR+K  E AFLN+Y++L + PDP P L     + ++  +++++++EN+K++
Sbjct:    71 FQAEIDALSKRSKESETAFLNVYKRLIDVPDPVPVLELSQQLHQKVQRMNDIDTENQKLR 130

Query:   144 IELEEYRTEATHLKNQQSTIXXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKTLEIL 203
               LEEY  E   +KNQ+ TI                          + + ++  +    L
Sbjct:   131 ETLEEYNKEFAEVKNQEVTIKTLKEKIREYEQSMKNQAENLALEKQQQIHKDYTEKERRL 190

Query:   204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERA 263
             QE +++L  +L++A+    T+Q   E  Q++LF+++ ++DEE  AK  E++++M ++ERA
Sbjct:   191 QESQESLVCKLQEAELKAQTLQTALERTQTELFDLKTKNDEESTAKADEIDMVMIDLERA 250

Query:   264 QTRLLSLQREKDLLRSQLQSA--NDEAGSRNSDT--------LDSNSYLENSLSAKEKII 313
               R  + +R  + LR QL  A  + +  +R  +T        L   S LE  LSAKE+ +
Sbjct:   251 NQRAEAAERAAEALREQLMLAGKSSQLPTRTDETPYADECVDLVPRSSLEAELSAKEREM 310

Query:   314 SELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRK 373
              +L  ++  ++ +LS  RE    +I +L   L  K  AL  ++++LQA+      ++++K
Sbjct:   311 LQLVEDVQRLQASLSALRENTHTQISQLQQQLTMKTTALTQLEEKLQAQAD---YEEVKK 367

Query:   374 KVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLE 433
             +  IL+++ +   +      A  D     +E LLL+KNR ++ E   L++  +E +    
Sbjct:   368 EFSILKSMEFGPRDGS----AVQDSS-KPLEVLLLEKNRSLQSENASLRIANTELSGRYA 422

Query:   434 TAEGKIAELTAKINEQQKLIQKLEDDI--LKGYSSKDRKGNVFDDWDLSEAGGTELSEKA 491
               + + +      ++Q++LI KLE D+  ++  S  D +G       + E     + E  
Sbjct:   423 CLQMEFSTAVQTTSDQKELILKLEQDLSTIQTMSRPDAEG-ADTSAVMRECVPDPIKEAT 481

Query:   492 DKKHTY---PDQDQS---SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK 545
                 +    P  DQ    S+L +I +QR+RFR+R +E E     L++ +  L +EL+  +
Sbjct:   482 ALFSSISGSPQADQGQMDSLLSIISSQRERFRSRNQELEVANSSLQQTLQALQSELDSLR 541

Query:   546 ADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFS 605
             ADN++LY KI+F+Q Y                  +G + D   +Y   YE+ ++PF++FS
Sbjct:   542 ADNIKLYEKIKFLQSYPTR---------------AGDSDDTVMRYSSQYEERLDPFSSFS 586

Query:   606 KKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYR 657
             KKER +RY+ L   D+ TLS GR +L NK ART AFFYT++LH LVF  LY+
Sbjct:   587 KKERQRRYQSLSPWDKATLSLGRVILSNKTARTIAFFYTLMLHCLVFLVLYK 638

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|H0YL76 CUX1 "Protein CASP" [Homo sapiens (taxid:9606)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 193/597 (32%), Positives = 316/597 (52%)

Query:    83 LLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELESEN 139
             LLK +Q E+D L+KR+K  E AFLN+Y++L + PDP PAL    +  LK   L ++E+EN
Sbjct:    22 LLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIETEN 81

Query:   140 RKMKIELEEYRTEATHLKNQQSTIXXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKT 199
             +K++  LEEY  E   +KNQ+ TI                          + L  +  + 
Sbjct:    82 QKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEK 141

Query:   200 LEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDE 259
                LQE + +   +L +A+  V ++Q   E  +++LF+++ + DEE  AK  E+ ++M +
Sbjct:   142 ERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTD 201

Query:   260 VERAQTRLLSLQREKDLLRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLSAK 309
             +ERA  R    QRE + LR QL SAN   +  S+     D        + S LE  L+AK
Sbjct:   202 LERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAK 261

Query:   310 EKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVD 369
             E+ I++L  ++  ++ +L+  RE   ++I +L   L  K + L+ ++++L+ +      +
Sbjct:   262 EREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQAD---YE 318

Query:   370 DLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKT 429
             +++K++ IL+     S+E    E A   +    +E LLL+KNR ++ E   L++  S+ +
Sbjct:   319 EVKKELNILK-----SMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLS 373

Query:   430 SLLETAEGKIAELTAKINEQQKLIQKLEDD--ILKGYSSKDRKGNVFDDWD-----LSEA 482
                   + +I E  A   EQ++LI +LE D  I++     D +G      +     + EA
Sbjct:   374 GRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEA 433

Query:   483 GGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELE 542
                     A      P+    S+L +I +QR+RFRAR +E E E R  +  +  L +EL+
Sbjct:   434 TALFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELD 493

Query:   543 KTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFA 602
               +ADN++L+ KI+F+Q Y       RGS         G + D E +Y   YE+ ++PF+
Sbjct:   494 SLRADNIKLFEKIKFLQSYPG-----RGS---------G-SDDTELRYSSQYEERLDPFS 538

Query:   603 AFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMS 659
             +FSK+ER ++Y  L   D+ TLS GR +L NK ART  FFYT+ LH LVF  LY+++
Sbjct:   539 SFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLA 595

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

UNIPROTKB|F1P4L9 Gga.43632 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 188/599 (31%), Positives = 317/599 (52%)

Query:    83 LLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLS---ELESEN 139
             LLK +Q E+D L KR+K  E AFLN+Y++L + PDP PAL    +  LK+    ++E+EN
Sbjct:     9 LLKSFQGEIDALGKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRMHDIETEN 68

Query:   140 RKMKIELEEYRTEATHLKNQQSTIXXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKT 199
             +K++  LEEY  E   +KNQ+ TI                          + L  +  + 
Sbjct:    69 QKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAENIALEKEQKLQNDFAEK 128

Query:   200 LEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDE 259
                LQE + +   +L +A+  V  +Q   E  +++LF+++ + DEE  AK  E+ ++M +
Sbjct:   129 ERKLQETQMSTASKLEEAEHKVQALQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTD 188

Query:   260 VERAQTRLLSLQREKDLLRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLSAK 309
             +ERA  R    QRE + LR QL SAN   +  ++     D        + S LE  L+AK
Sbjct:   189 LERANQRAEVAQREAETLREQLSSANKSLQLATQIQKAPDVEQAIEVLTRSSLEVELAAK 248

Query:   310 EKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVD 369
             E+ I++L  ++  ++ +L+  RE   ++I +L   L  K + L+ ++++L+ +      +
Sbjct:   249 EREIAQLVEDVQRLQGSLTKLRENSSSQISQLEQQLTAKNSTLKQLEEKLKGQAD---YE 305

Query:   370 DLRKKVKILQAVGYNSIEAEDWEVATNDEEMSK-MESLLLDKNRKMEHELTQLKVKLSEK 428
             +++K++ IL+++ +   E+      +  ++ SK +E LLL+KNR ++ E   L++  S+ 
Sbjct:   306 EVKKELNILKSMEFAPPES------SGAQDASKPLEVLLLEKNRSLQSENATLRITNSDL 359

Query:   429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDI-----LKGYSSKDRKGNVFDDWD----- 478
             +      + ++ E  + +  Q++L+ KLE D+     L      D +G      +     
Sbjct:   360 SVRCAELQIQLTEAVSGLAGQKELVAKLEHDLSTIQALSAVHRPDAEGAAIPSLEKIPEP 419

Query:   479 LSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLT 538
             + EA              +P+    S+L +I +QR+RFRAR +E E E R ++  +  L 
Sbjct:   420 IKEATALFYGHPPSPSAPFPEGQVDSLLSIISSQRERFRARNQELEGENRMMQHTVHALQ 479

Query:   539 AELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDI 598
             +EL+  +ADN++LY KI+F+Q Y       RGS +           D E +Y   YE+ +
Sbjct:   480 SELDNLRADNIKLYEKIKFLQSYPG-----RGSSR----------DDTELRYSSQYEERL 524

Query:   599 NPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYR 657
             +PF++FS+KER ++Y  L   D+ TLS GR +L NK ART AFFYT+LLH LVF  LY+
Sbjct:   525 DPFSSFSRKERQRKYLSLSPWDKATLSMGRLILSNKTARTVAFFYTLLLHCLVFLVLYK 583

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

DICTYBASE|DDB_G0283375 scdA "similar to CCAAT displacement protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 489 (177.2 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
 Identities = 134/425 (31%), Positives = 227/425 (53%)

Query:    51 QENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQ 110
             +E+  K+R+ LA+ T+DFKK + +EK+  F SLLK YQ+EVD LTKR+KF E  FL +Y+
Sbjct:   105 KEDCLKSRKVLAKQTQDFKKFTDDEKIKQFGSLLKLYQDEVDKLTKRSKFTETVFLGMYK 164

Query:   111 KLYEAPDPYPALASIAEQDLKLSE---LESENRKMKIELEEYRTEATHLKNQQSTIXXXX 167
              L E  DP PAL++  E+  K+ +   LE ENRK++++L +++ E   ++NQ+ TI    
Sbjct:   165 DLNEISDPVPALSAALEECSKVDQTTKLEIENRKLQMQLTDFKKEFQEIQNQEVTIRRLE 224

Query:   168 XXXXXXXXXXXXXXXXXXXXXX-RGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQK 226
                                    + L +E Q+ L+  ++REQ LQ Q  Q +D +  +  
Sbjct:   225 DKIKEMNSERSEFISMDKLNLKEQELKQEFQQQLQASKQREQQLQKQNDQLQDELTKISI 284

Query:   227 LHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286
              +   Q+QL +++ + ++E  +K SE+ +L  E +R Q++L +LQRE   +R +     +
Sbjct:   285 TNNQIQNQLLDIKTKYEDELQSKHSEIEMLTVEFDRVQSKLTTLQRENLSIREESMVEKN 344

Query:   287 EAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLI 346
                       D    LE  +  KE   S+L  ++  ++T +S ++++  N + +L    I
Sbjct:   345 SLTPMVKRVAD----LELEMLQKETETSKLVDQIQELKTHISTQQDEKSN-LSRLYE--I 397

Query:   347 EKEAALEDMKKELQARPTSKMVDDLRKKVKILQA-VGYNSIEAE--DWEVATNDEEMSK- 402
             EKE  +E + K +Q  P+   V+ ++K++  L+A V  + I     D E   N    +  
Sbjct:   398 EKEK-VEKLDKYIQNNPSPSEVELIKKELLTLKAIVDQDEINKAIIDQEKDNNQNNTTNN 456

Query:   403 ----MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLED 458
                  + LL DKNR++E+E T+L++  + + S L      I EL    +EQ  LIQ+LE+
Sbjct:   457 TGGGSDKLLKDKNRQLENECTRLRLLTNTQESELIEKNLAIDELQKVKDEQLLLIQRLEE 516

Query:   459 DILKG 463
             D+  G
Sbjct:   517 DLSNG 521

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

SGD|S000001662 COY1 "Golgi membrane protein with similarity to mammalian CASP" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 173/652 (26%), Positives = 321/652 (49%)

Query:    47 IAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFL 106
             I + +  S  +R+ LA  T+ FKK  PEEKL+  N ++K YQ E+DNLT+R+KF E    
Sbjct:    32 IKDKETLSLNSRKSLATETKKFKKLEPEEKLNNVNKIIKQYQREIDNLTQRSKFSEKVLF 91

Query:   107 NIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIXXX 166
             ++Y+KL EAPDP P L S  E   KL +++ +++++K ++     +     + + T+   
Sbjct:    92 DVYEKLSEAPDPQPLLQSSLE---KLGKID-DSKELKEKISYLEDKLAKYADYE-TLKSR 146

Query:   167 XXXXXXXXXXXXXXXXXXXXXXXRGLAEENQKTLEILQEREQALQDQL----RQAKDSVA 222
                                        EE  +  +   ERE  L  QL     Q K   A
Sbjct:   147 LLDLEQSSAKTLAKRLTAKTQEINSTWEEKGRNWK---EREADLLKQLTNVQEQNKALEA 203

Query:   223 TMQKLHELAQSQLFEVRAQSDEERVAKQ-SEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281
              + K  ++  +   +   +++++ V+ + +E NL+  E+E  Q R+  L++  + L   L
Sbjct:   204 KISKNIDIEGNGNEDGDQENNQKEVSTRIAEYNLVTQELETTQARIYQLEKRNEELSGAL 263

Query:   282 QSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQ--H-MNEI 338
               A  EA              E  L AKE  +++L SE   +  +   ER+   H +NE+
Sbjct:   264 AKATSEAEK------------ETELHAKELKLNQLESENALLSASYEQERKSTSHAINEL 311

Query:   339 KK-LNALLIEKEA---ALEDMKKELQARPT-SKMVDDLRKKVKILQAVGYNSIEAEDWEV 393
             K+ LN+++ E E+    LE ++++L      +K+ ++L    KI    G N  ++++ ++
Sbjct:   312 KEQLNSVVAESESYKSELETVRRKLNNYSDYNKIKEELSALKKI--EFGVNEDDSDN-DI 368

Query:   394 ATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI 453
              + D+  +  ES LL  N+K++  L + + K + +       +  + +L  +I   ++  
Sbjct:   369 RSEDKNDNTFESSLLSANKKLQATLAEYRSKSTAQEEERNELKKSVDQLKQQIATLKEAN 428

Query:   454 QKLEDDILKGYSSKDRKGNVFDDWDLSEAGGT-ELSEKADKKHT-------YPDQ----- 500
             +KLE D+ K  +        F++     +G T +++ +   K +        P+      
Sbjct:   429 EKLETDLEKVENVSPH----FNETASMMSGVTRQMNNRTSHKMSPTSSIIGIPEDGELSG 484

Query:   501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560
             +QS++L ++  QRDRFR+R  + E+++RQ   + G L  E+ K K DN +LY +IR++Q 
Sbjct:   485 NQSTILPIVTKQRDRFRSRNMDLEKQLRQGNSEKGKLKLEISKLKGDNTKLYERIRYLQS 544

Query:   561 YNNEKV-ISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQ-RYKELGI 618
             YNN    +++ +++           D+ES+Y ++Y++ ++P A F + E +  + K+L  
Sbjct:   545 YNNNNAPVNQSTERI----------DVESQYSRVYDESLHPMANFRQNELNHYKNKKLSA 594

Query:   619 RDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTC-LYRMSALSYLSNGPE 669
              +++  S  + +L NK  R    FY I LH LVF   +Y ++   Y++  PE
Sbjct:   595 LEKLFSSFAKVILQNKMTRMVFLFYCIGLHGLVFMMSMYVINISGYMT--PE 644

GO:0003674 "molecular_function" evidence=ND

GO:0000139 "Golgi membrane" evidence=IEA;IGI

GO:0048193 "Golgi vesicle transport" evidence=IGI

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q13948	CASP_HUMAN	No assigned EC number	0.3292	0.9032	0.9085	yes	no
Q5R8V1	CASP_PONAB	No assigned EC number	0.3262	0.9032	0.9085	yes	no
P70403	CASP_MOUSE	No assigned EC number	0.3216	0.9032	0.9085	yes	no
Q9LS42	CASP_ARATH	No assigned EC number	0.7982	1.0	0.9898	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017645001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (684 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016674001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (677 aa)							•		0.488

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	682
pfam08172	245	pfam08172, CASP_C, CASP C terminal	1e-69
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-06
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	8e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	3e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-05
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	1e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	1e-04
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	3e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-04
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.001
pfam13514	1118	pfam13514, AAA_27, AAA domain	0.002
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl|CDD|219737 pfam08172, CASP_C, CASP C terminal

 Score =  226 bits (579), Expect = 1e-69
 Identities = 91/246 (36%), Positives = 133/246 (54%), Gaps = 14/246 (5%)

Query: 432 LETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKA 491
           LE  + +++ L AK+ EQQ+L  KLE+D+              D+  +   G   +  + 
Sbjct: 1   LEELQKELSSLNAKLEEQQELNAKLENDLATVQDEISN-RRFNDNASMISGGTRRIPNRG 59

Query: 492 DKKHTYP-------DQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544
                 P           SS+L +I +QRDRFR R  E EEE+R+  + I  L  ELE  
Sbjct: 60  GSGKLSPTSSIIGGPGGSSSILPIITSQRDRFRKRNTELEEELRKQNQTISSLRRELESL 119

Query: 545 KADNVQLYGKIRFVQDYN-----NEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDIN 599
           KADN++LY KIR++Q Y      ++  +S    + +     G + D+ES+Y K YE+ +N
Sbjct: 120 KADNIKLYEKIRYLQSYQGNSPPSDSAVSNSPGRSSLQPGPG-SIDVESRYSKAYEESLN 178

Query: 600 PFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMS 659
           PFAAF K+ER++ YK L   +RI LS  R +L N+ +RT  FFY I LH+LVF  LY M+
Sbjct: 179 PFAAFRKRERERAYKRLSPPERIFLSLTRAVLANRTSRTLFFFYCIGLHLLVFLVLYYMA 238

Query: 660 ALSYLS 665
           A   + 
Sbjct: 239 ASDSVR 244

This domain is the C-terminal region of the CASP family of proteins. It is a Golgi membrane protein which is thought to have a role in vesicle transport. Length = 245

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 68.2 bits (167), Expect = 1e-11
 Identities = 62/317 (19%), Positives = 130/317 (41%), Gaps = 26/317 (8%)

Query: 125 IAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEI 184
           I E + K+ ELE +  +++  L E R E   L+ +   +R+  E   +    + + +  +
Sbjct: 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738

Query: 185 VEIKQRGLAEENQKTLEI---------LQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235
               ++      Q + E+         L+ER +  +++L +A+  +  ++   E  + +L
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 236 FEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDT 295
             +R   DE     ++E+ LL +E    + RL SL+R       +L+   ++    + D 
Sbjct: 799 KALREALDE----LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 296 LDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDM 355
               + +E      E++ SEL +        L NER      +  L + L E    L ++
Sbjct: 855 ESLAAEIEELEELIEELESELEA--------LLNERASLEEALALLRSELEELSEELREL 906

Query: 356 KKELQA-----RPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDK 410
           + +            + +  L  +++ L+    N  E    E +   EE   +E+ + D 
Sbjct: 907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDD 966

Query: 411 NRKMEHELTQLKVKLSE 427
             +    L +L+ K+ E
Sbjct: 967 EEEARRRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 65.5 bits (160), Expect = 6e-11
 Identities = 70/301 (23%), Positives = 134/301 (44%), Gaps = 17/301 (5%)

Query: 166 LEERNRQLE--QQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT 223
           L E  RQL+  ++  EK +   E+K    AE  +  L +L  R + L+++L + ++ +  
Sbjct: 195 LNELERQLKSLERQAEKAERYKELK----AELRELELALLVLRLEELREELEELQEELKE 250

Query: 224 MQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283
            ++  E   ++L E+  + +E R+        L +E+E  Q  L +L  E   L  Q Q 
Sbjct: 251 AEEELEELTAELQELEEKLEELRLEVSE----LEEEIEELQKELYALANEISRLEQQKQI 306

Query: 284 ANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNA 343
             +   +      +  + LE   S  +++  EL  EL      L  E E    E+++L A
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELA-ELEEKLEELKEELESLEAELEELEA 365

Query: 344 LLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA-VGYNSIEAEDWE--VATNDEEM 400
            L E E+ LE+++++L+       V  L  ++  L   +       E  E       +E+
Sbjct: 366 ELEELESRLEELEEQLETL--RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423

Query: 401 SKMESLLLDKNRK-MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDD 459
            ++   L +   K ++ EL +L+ +L E    LE  E  + EL  ++ E ++ +   E +
Sbjct: 424 EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483

Query: 460 I 460
           +
Sbjct: 484 L 484

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.5 bits (160), Expect = 7e-11
 Identities = 74/377 (19%), Positives = 152/377 (40%), Gaps = 31/377 (8%)

Query: 84   LKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMK 143
            LK  +EE+  L  + +  E    ++  +L                +  L EL  +  +++
Sbjct: 669  LKELEEELAELEAQLEKLEEELKSLKNELRSL-------------EDLLEELRRQLEELE 715

Query: 144  IELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEIL 203
             +LEE + E   L+ +     +L+ R  +LE+++EE  +E+ E+++R   EE ++ LE L
Sbjct: 716  RQLEELKRELAALEEEL---EQLQSRLEELEEELEELEEELEELQER--LEELEEELESL 770

Query: 204  QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERA 263
            +E    L++++ + ++    +Q+  E  + +L E   + D      +S         ER 
Sbjct: 771  EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQ----RRERL 826

Query: 264  QTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNI 323
            +  +  L+ E + L  +L    +E              L+  L   E    EL  EL  +
Sbjct: 827  EQEIEELEEEIEELEEKLDELEEELEELEK----ELEELKEELEELEAEKEELEDELKEL 882

Query: 324  ETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGY 383
            E     E+E+   E+++L + L E +  +E +++ L+         ++       +    
Sbjct: 883  E----EEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938

Query: 384  NSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELT 443
                 E  E+    E + +    L   N +   E  +++ +  E  S  E  E    +L 
Sbjct: 939  YEDTLET-ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLL 997

Query: 444  AKINEQQKLIQKLEDDI 460
              I E  K  ++   + 
Sbjct: 998  EVIEELDKEKRERFKET 1014

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 61.2 bits (149), Expect = 1e-09
 Identities = 59/310 (19%), Positives = 132/310 (42%), Gaps = 30/310 (9%)

Query: 127 EQDLKLSELESENRKMK--IELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEI 184
           E+  +   L  E R+ +    L+E        +  +  +  LEE   +L +++ E  K +
Sbjct: 208 EKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRL 267

Query: 185 VEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDE 244
            EI+Q  L E N+K  ++ +E +  +++++ + +  +A++++     + +L      ++E
Sbjct: 268 EEIEQL-LEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL----EDAEE 322

Query: 245 ERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLEN 304
                ++E++ L+ E+E  +  +   ++ +D L  +     +E              L  
Sbjct: 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELED-----------LRA 371

Query: 305 SLSAKEKIISELNSELHNIETALS---NEREQHMNEIKKLNALLIEKEAALEDMKKELQA 361
            L   +K  +E   EL +    L     E  +   E+ +L   L      L D+   +  
Sbjct: 372 ELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431

Query: 362 RPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKN---RKMEHEL 418
                   +  K+ K L+      I+ ++W++     ++SK E  L D      ++E EL
Sbjct: 432 IEAKINELEEEKEDKALE------IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL 485

Query: 419 TQLKVKLSEK 428
           ++L+ +L+E 
Sbjct: 486 SKLQRELAEA 495

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 79/349 (22%), Positives = 159/349 (45%), Gaps = 19/349 (5%)

Query: 123  ASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVK 182
             S   Q  +L ELE E  +++ +LE+   E   LKN+  ++  L E  R+  +++E +++
Sbjct: 660  RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLE 719

Query: 183  EIVEIKQRGLAEENQ--KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
            E+         E  Q    LE L+E  + L+++L + ++ +  +++  E  +  L +++ 
Sbjct: 720  ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKE 779

Query: 241  QSDE---ERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLD 297
            + +E   +R A Q E+  L +E+E A+ RL +L+RE + L  + +    E      +  +
Sbjct: 780  EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839

Query: 298  SNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKK 357
                LE  L   E+ + EL  EL      L  E E+   E ++L   L E E   E++++
Sbjct: 840  ----LEEKLDELEEELEELEKEL----EELKEELEELEAEKEELEDELKELEEEKEELEE 891

Query: 358  ELQ------ARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKN 411
            EL+      A    ++     +  ++   +    +E  + E    +E    +E+ L  + 
Sbjct: 892  ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI 951

Query: 412  RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460
             ++E E+  L           E  E +  EL ++  + ++  +KL + I
Sbjct: 952  ERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVI 1000

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 95/443 (21%), Positives = 197/443 (44%), Gaps = 21/443 (4%)

Query: 32  DLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEV 91
           +LE + S L E    + E  E   K  +KL E   + ++   E+++      L   +EE 
Sbjct: 189 ELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEK 248

Query: 92  DNLTKRAKFGENAFLNIYQKLYEAPDPY----PALASIAEQDLKLSELESENRKMKIELE 147
           + L +             + L    +        L  + E+  +L ELE E  +++ ELE
Sbjct: 249 ERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308

Query: 148 EYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQR--GLAEENQKTLEILQE 205
             R     L+     ++ LEER  +LE+++E+   E+ E+ +    LA+  ++ L+ L+E
Sbjct: 309 GLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEE 368

Query: 206 REQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD---EERVAKQSEVNLLMDEVER 262
           R + L+ +L +A + +  +++  +  + +L E+ A  +   EE    + E+  L  E+E 
Sbjct: 369 RLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428

Query: 263 AQTRLLSLQREKDLLRSQLQSANDEAGSRNS----DTLDSNSYLENSLSAKEKIISELNS 318
            +  +  L+ + + L S+     + AG+              + +  L   E  + EL  
Sbjct: 429 LEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEE 488

Query: 319 ELHNIETA--LSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVK 376
           EL   +    L  E E+   E+++L   LIE     E +K+EL+ +   K+ + L +  +
Sbjct: 489 ELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEK-LEKLENLLEELEE 547

Query: 377 ILQAVGYNSIEAEDWEVATNDEEMSKMESLL--LDKNRKMEHELTQLKVKLSEKTSLLET 434
           + + +    ++    E+   ++ + +++ LL  L   R  + EL +L+ +L E    L+ 
Sbjct: 548 LKEKLQLQQLKE---ELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKE 604

Query: 435 AEGKIAELTAKINEQQKLIQKLE 457
            E ++++L   +   +    + E
Sbjct: 605 LEERLSQLEELLQSLELSEAENE 627

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.0 bits (125), Expect = 9e-07
 Identities = 57/243 (23%), Positives = 112/243 (46%), Gaps = 16/243 (6%)

Query: 123 ASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVK 182
             + E + ++ EL+SE  +++ ELEE + E   LK +   I  LE     L +++EE   
Sbjct: 260 EELEEAEKEIEELKSELEELREELEELQEELLELKEE---IEELEGEISLLRERLEELEN 316

Query: 183 EIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS 242
           E+ E+         ++ LE L+E+ +AL+++L + +  +  +++L    +    E+  + 
Sbjct: 317 ELEEL---------EERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKL 367

Query: 243 DEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG---SRNSDTLDSN 299
                  +     L +E+   +  L  ++ E + L+ +++S  +       R  D  +  
Sbjct: 368 SALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEEL 427

Query: 300 SYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKEL 359
             LE  L   +  + ELN EL  +E  L   R++   E+++  A L E+   LE     L
Sbjct: 428 KELEAELEELQTELEELNEELEELEEQLEELRDRLK-ELERELAELQEELQRLEKELSSL 486

Query: 360 QAR 362
           +AR
Sbjct: 487 EAR 489

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.0 bits (125), Expect = 1e-06
 Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 39/228 (17%)

Query: 125 IAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEI 184
           + E + KL EL  E  +++ E+EE + E   L    + I RLE++            + +
Sbjct: 262 LQELEEKLEELRLEVSELEEEIEELQKE---LYALANEISRLEQQ-----------KQIL 307

Query: 185 VEIKQRGLA---------EENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235
            E                EE +  L+ L E    L+++L + K+ + +++   E  +++L
Sbjct: 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367

Query: 236 FEVRAQSDE----------ERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285
            E+ ++ +E          +    + ++  L +E+ER + RL  L+  ++ L+ +++   
Sbjct: 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL 427

Query: 286 DEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQ 333
            +        L +       L   E+ + EL  EL  +E AL   RE+
Sbjct: 428 KKLEEAELKELQAE------LEELEEELEELQEELERLEEALEELREE 469

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.0 bits (125), Expect = 1e-06
 Identities = 64/357 (17%), Positives = 147/357 (41%), Gaps = 29/357 (8%)

Query: 194  EENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQ---SQLFEVRAQSDEERVAKQ 250
             E +  LE L+E  ++L+++LR  +D +  +++  E  +    +L    A  +EE    Q
Sbjct: 677  AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 251  SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKE 310
            S +  L +E+E  +  L  LQ   + L  +L+S  +       +  +     +      E
Sbjct: 737  SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE 796

Query: 311  KI---ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
            ++   + E    L  +E  L +  ++     +++  L  E E   E +            
Sbjct: 797  ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKL------------ 844

Query: 368  VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
             D+L ++++ L+      +E    E+   + E  ++E  L    +++E E  +L+ +L E
Sbjct: 845  -DELEEELEELE----KELEELKEELEELEAEKEELEDEL----KELEEEKEELEEELRE 895

Query: 428  KTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTEL 487
              S L   + +I +L  ++ E +  +++LE ++ +     + +     + +L      E 
Sbjct: 896  LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE--IER 953

Query: 488  SEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544
             E+  +     +       + +  + +  +++  + EE   +L E I  L  E  + 
Sbjct: 954  LEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 75/339 (22%), Positives = 160/339 (47%), Gaps = 22/339 (6%)

Query: 131 KLSELESENRKMKIELEEYRTEATHLKNQQSTIRR---LEERNRQLEQQMEEKVKEIVEI 187
           KL   E    +++  LEE   +   L+ Q     R   L+   R+LE  +     + +  
Sbjct: 180 KLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRK 239

Query: 188 KQRGLAEE---NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDE 244
           +   L EE    ++ LE LQE  +  + ++ + K  +  +++  E  Q +L E++ + +E
Sbjct: 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299

Query: 245 ERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLEN 304
                + E++LL + +E  +  L  L+   + L+ ++++  +E   R +   +    L  
Sbjct: 300 ----LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355

Query: 305 SLSAKEKIISELNSELHNIETALSNERE---QHMNEIKKLNALLIEKEAALEDMKKELQA 361
              AKE++  +L++ L  +E      RE   +   E+ ++   L E +  +E +++ L+ 
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415

Query: 362 RPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLL---LDKNRKMEHEL 418
              S+ ++DL++++K L+A     +E    E+   +EE+ ++E  L    D+ +++E EL
Sbjct: 416 --LSERLEDLKEELKELEA----ELEELQTELEELNEELEELEEQLEELRDRLKELEREL 469

Query: 419 TQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLE 457
            +L+ +L      L + E ++  L A+    Q +   LE
Sbjct: 470 AELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLE 508

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 58/248 (23%), Positives = 111/248 (44%), Gaps = 12/248 (4%)

Query: 32  DLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPE--EKLSLFNSLLKGYQE 89
           +LE+E   L E   ++ E  E+ ++   KL E   + ++      E+L      L+  + 
Sbjct: 748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAER 807

Query: 90  EVDNLTKRAKFGENAFLNIYQKLYEAPDPY-PALASIAEQDLKLSELESENRKMKIELEE 148
            +D L +  +  E     + Q++ E  +        + E + +L ELE E  ++K ELEE
Sbjct: 808 RLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEE 867

Query: 149 YRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQ 208
              E    +  +  ++ LEE   +LE+++ E   E+ E+K     EE +K  E L+E E 
Sbjct: 868 LEAE---KEELEDELKELEEEKEELEEELRELESELAELK-----EEIEKLRERLEELEA 919

Query: 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLL-MDEVERAQTRL 267
            L+    +  +    +++ +E       E   +  EE +     VNL  ++E E  + R 
Sbjct: 920 KLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERY 979

Query: 268 LSLQREKD 275
             L+ +++
Sbjct: 980 EELKSQRE 987

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.7 bits (119), Expect = 6e-06
 Identities = 57/262 (21%), Positives = 118/262 (45%), Gaps = 26/262 (9%)

Query: 200 LEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDE 259
           L+ L+ER + L+ +L   +  +  ++        +L +  + +  +    + E+  L  E
Sbjct: 676 LQRLRERLEGLKRELSSLQSELRRIENR----LDELSQELSDASRKIGEIEKEIEQLEQE 731

Query: 260 VERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSE 319
            E+ + RL  L+ +   L  ++++   E              LE  +   E+ + +L   
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVKSEL-----------KELEARIEELEEDLHKLEEA 780

Query: 320 LHNIETALSNER-EQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKIL 378
           L+++E  LS+ R  +   E+ KL   +   EA L +++++L      K    L K+++ L
Sbjct: 781 LNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY--LEKEIQEL 838

Query: 379 QAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGK 438
           Q       +  D +      E  ++E+L   K  ++E EL +L+  L +  S L   + +
Sbjct: 839 QE------QRIDLKEQIKSIE-KEIENLNGKK-EELEEELEELEAALRDLESRLGDLKKE 890

Query: 439 IAELTAKINEQQKLIQKLEDDI 460
             EL A++ E ++ I++LE  I
Sbjct: 891 RDELEAQLRELERKIEELEAQI 912

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.3 bits (118), Expect = 7e-06
 Identities = 68/297 (22%), Positives = 123/297 (41%), Gaps = 54/297 (18%)

Query: 258 DEVERAQTRLLSLQREKDLLRSQL---QSANDEAGSRNSDTLDSNSYLENSLSAKEKIIS 314
            E++R + RL  L+RE   L+S+L   ++  DE     SD       +E  +   E+   
Sbjct: 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733

Query: 315 ELNSELHNIET---ALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDL 371
           +L   L  +E    +L  E E   +E+K+L A + E E  L  +++ L            
Sbjct: 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL------------ 781

Query: 372 RKKVKILQAVGYNSIEAE--DWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKT 429
                       N +EA      +     E+SK+E    ++  ++E  L +++ KL+  T
Sbjct: 782 ------------NDLEARLSHSRIPEIQAELSKLE----EEVSRIEARLREIEQKLNRLT 825

Query: 430 SLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSE 489
              E  E +I EL  +  + ++ I+ +E +I                 +       EL E
Sbjct: 826 LEKEYLEKEIQELQEQRIDLKEQIKSIEKEI-----------------ENLNGKKEELEE 868

Query: 490 KADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546
           +  ++     +D  S L  +  +RD   A+LRE E ++ +L+ +I      L + KA
Sbjct: 869 EL-EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 48.4 bits (116), Expect = 8e-06
 Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 25/144 (17%)

Query: 126 AEQDLKLSELESENRKMKIELE------EYRTEA-THLKNQQSTIRRLEERNRQLEQQME 178
           A++ ++ ++ E+E  K +  LE      + R E    LK +++ ++RLE R  Q E+ ++
Sbjct: 34  AKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLD 93

Query: 179 EKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEV 238
            K+            E   K  E L+++E+ L ++ +   +    +++L    + +L  +
Sbjct: 94  RKM------------ESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141

Query: 239 RAQSDEERVAKQSEVNLLMDEVER 262
              + EE  AK+    +L++EVE 
Sbjct: 142 SGLTQEE--AKE----ILLEEVEE 159

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 66/354 (18%), Positives = 130/354 (36%), Gaps = 67/354 (18%)

Query: 194 EENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEER---VAKQ 250
           EE ++ +E L+E+   L+  L + +  +  +++  E  + +L E+  Q    R      +
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE--AGSRNSDTLDSNSYLENSLSA 308
           +EV  L + + +    L  L+ E + L  +L+ A +E        + L            
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL------------ 787

Query: 309 KEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMV 368
            E  I +L  EL  +  AL   R +       LN         LE +++ + A  T + +
Sbjct: 788 -EAQIEQLKEELKALREALDELRAEL----TLLNEEAANLRERLESLERRIAA--TERRL 840

Query: 369 DDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEK 428
           +DL ++++ L             ++ +   E+ ++E L+     ++E EL  L  + +  
Sbjct: 841 EDLEEQIEELSE-----------DIESLAAEIEELEELI----EELESELEALLNERASL 885

Query: 429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELS 488
              L     ++ EL+ ++ E +    +L                             EL 
Sbjct: 886 EEALALLRSELEELSEELRELESKRSELRR---------------------------ELE 918

Query: 489 EKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELE 542
           E  +K     +     +   I N ++R       T EE   L+ KI     E  
Sbjct: 919 ELREKLAQL-ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 48/245 (19%), Positives = 104/245 (42%), Gaps = 42/245 (17%)

Query: 103  NAFLNIYQKLYEAPDPYPALASIA----EQDLKLSELESENRKMKIELEEYRTEATHLKN 158
            + F+  +  +    DP   L  +     E +  L++ ES+ +       + R++    K 
Sbjct: 820  SRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ-------QQRSQLEQAKE 872

Query: 159  QQSTIRRLE------------ERNRQLEQQMEEKVKEIVEIKQRG-LAEENQKTLEILQE 205
              S + RL             +R  ++ +Q++E  +    ++Q G    + +  + +LQ 
Sbjct: 873  GLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQS 932

Query: 206  REQ---ALQDQLRQAKDSVATMQKLHELAQSQLFEVRA----QSDEERVAKQSEVNLLMD 258
              +    L+   +QA+ +    ++    A +++ + RA    +   E +AK S++N    
Sbjct: 933  DPEQFEQLKQDYQQAQQTQRDAKQ-QAFALTEVVQRRAHFSYEDAAEMLAKNSDLN---- 987

Query: 259  EVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNS 318
              E+ + RL   ++E+   R QL+ A  +    N         L++S  AK +++ EL  
Sbjct: 988  --EKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLAS----LKSSYDAKRQMLQELKQ 1041

Query: 319  ELHNI 323
            EL ++
Sbjct: 1042 ELQDL 1046

Length = 1486

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.8 bits (109), Expect = 8e-05
 Identities = 48/220 (21%), Positives = 99/220 (45%), Gaps = 28/220 (12%)

Query: 328 SNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIE 387
             E E+   +I++L   + E E AL +++KEL+      + ++L +  K L+      + 
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEE-----LEEELEQLRKELE-----ELS 725

Query: 388 AEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKIN 447
            +   +  +   +      L ++  ++  ELT+L+ ++ E    LE AE ++AE  A+I 
Sbjct: 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785

Query: 448 EQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLK 507
           E +  I++L++++     + D                T L+E+A         +    L+
Sbjct: 786 ELEAQIEQLKEELKALREALDELRAEL----------TLLNEEA--------ANLRERLE 827

Query: 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKAD 547
            +  +      RL + EE++ +L E I  L AE+E+ +  
Sbjct: 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 13/136 (9%)

Query: 164 RRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT 223
           R   E   +L +++    +++   + R    E  + L  L E E  L+   + A D +  
Sbjct: 282 RVHLEEALELRRELYTSRRQLAAEQYR--LVEMARELAELNEAESDLEQDYQAASDHLNL 339

Query: 224 MQKLHELAQSQLFEVRAQSD----EERVAKQSEVNLLMDE-VERAQTRLLSLQREKDLLR 278
           +Q      + Q    R Q+D    EER+ +Q+EV    DE  E  + R  + + E D L+
Sbjct: 340 VQ---TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396

Query: 279 SQL---QSANDEAGSR 291
           SQL   Q A D   +R
Sbjct: 397 SQLADYQQALDVQQTR 412

Length = 1486

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 45/248 (18%), Positives = 91/248 (36%), Gaps = 21/248 (8%)

Query: 121 ALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEK 180
           A  ++ +  L L  L++E + +K +LE    E       Q  +R+L+ + +QL +Q    
Sbjct: 647 ARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQ--LRQLDAQLKQLLEQQ--- 701

Query: 181 VKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
            +  +E  +    E   + L   Q  E  L +QL Q   ++   +   +    +L +   
Sbjct: 702 -QAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYD 760

Query: 241 QS------DEERVAK-QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNS 293
           +       D   V + + ++  L   +ER   R   ++  +  ++               
Sbjct: 761 RELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETW--------LHRD 812

Query: 294 DTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALE 353
              +    L   L   E    EL  EL  +       R++   E K L   L + +  L 
Sbjct: 813 SLREERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLR 872

Query: 354 DMKKELQA 361
            ++ E++ 
Sbjct: 873 GLRDEMRQ 880

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 55/239 (23%), Positives = 108/239 (45%), Gaps = 28/239 (11%)

Query: 132 LSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRG 191
           +  LE + +K++ EL++ R   + L+NQ S +  L ER+ + +    +K  ++++ K   
Sbjct: 408 IERLEQDIKKLQAELQQARQNESELRNQISLLTSL-ERSLKSDLGQLKKENDMLQTKLNS 466

Query: 192 LAEENQKTLEILQEREQALQDQLRQAKDSVATMQ------KLHELAQSQLFEVRAQSDEE 245
           +    QK  + +Q  E+ L+ +     ++   +       K  E   ++     A S EE
Sbjct: 467 MVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREE 526

Query: 246 R--VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGS-RNSDTL------ 296
                KQ++ +L M E+++ +  L   + E  +L  + Q       S + ++ L      
Sbjct: 527 CAESLKQAKQDLEM-EIKKLEHDLKLKEEECRMLEKEAQELRKYQESEKETEVLMSALQA 585

Query: 297 --DSNSYLENSLSAKEKIISELNSELHNIETALS------NEREQHMNEIKKLNALLIE 347
             D N  LENSLSA+ ++  +L S L +++  L        +RE    EI  L + + +
Sbjct: 586 MQDKNLMLENSLSAETRLKLDLFSALGDVKRQLEIAHGAIYKREA---EIVDLKSKIAD 641

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 66/335 (19%), Positives = 142/335 (42%), Gaps = 35/335 (10%)

Query: 121  ALASIAEQDLKLSELESENRKMKIELEEYRTEATHLK----NQQSTIRRLEERNRQLEQQ 176
            A   I E + ++ +LE E  K+K  LEE   + + L+    N +S ++ LE R  +LE+ 
Sbjct: 714  ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED 773

Query: 177  MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF 236
            + +  + + +++ R       +    L + E+ +     + ++    + +L    +  L 
Sbjct: 774  LHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE-YLE 832

Query: 237  EVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTL 296
            +   +  E+R+  + ++  +  E+E    +   L+ E + L + L+      G    +  
Sbjct: 833  KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERD 892

Query: 297  DSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMK 356
            +    LE  L   E+ I EL +++         ++ + ++E+K     L E+ + +ED K
Sbjct: 893  E----LEAQLRELERKIEELEAQI--------EKKRKRLSELKAKLEALEEELSEIEDPK 940

Query: 357  KELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEH 416
             E +  P  ++   L      LQ V                EE+  +E + +   ++ E 
Sbjct: 941  GEDEEIPEEEL--SLEDVQAELQRVE---------------EEIRALEPVNMLAIQEYEE 983

Query: 417  ELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQK 451
             L +L  +L EK + LE     I E   +  ++++
Sbjct: 984  VLKRLD-ELKEKRAKLEEERKAILERIEEYEKKKR 1017

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 54/285 (18%), Positives = 107/285 (37%), Gaps = 30/285 (10%)

Query: 122 LASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKV 181
           L S+   + +L  L  E  K++ EL+         +        +EE  R+LE+++ E  
Sbjct: 70  LRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAE---KFSSEVEELTRKLEERLSELD 126

Query: 182 KEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQ 241
           +E+ +++      E    L+      + L               K   +       VR +
Sbjct: 127 EELEDLEDLLEELEPLAYLDFDLSLLRGL---------------KFLLVRLGL---VRRE 168

Query: 242 SDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSY 301
             E  V    +   L  E   A   ++     +DL +  +    +E G    +  + +  
Sbjct: 169 KLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDK--VSKILNELGFELYEVPEFDGG 226

Query: 302 LENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQA 361
               +S  E++I+E+  EL ++ + L    E+   E+  +  +L E E AL D+  +L  
Sbjct: 227 PSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREIL-EIEKALGDVLSKLAR 285

Query: 362 RPTSKMV------DDLRKKVKILQAVGYNSIEAEDWEVATNDEEM 400
              +  +      D++ K  KI+      +   E  E   + EE+
Sbjct: 286 TEYTLAIEGWVPADEVEKLKKIINRATGGAAYFEVSETDEDKEEV 330

Length = 660

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 73/362 (20%), Positives = 153/362 (42%), Gaps = 34/362 (9%)

Query: 123 ASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTI--------------RRLEE 168
             + E   +++E+ SE  +++ ELE+   E   L+  +  I              R+LEE
Sbjct: 200 KELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEE 259

Query: 169 RNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLH 228
           + R+LE+++EE  KEI E++++    +  K L+   E    L +   +  D +  ++K  
Sbjct: 260 KIRELEERIEELKKEIEELEEK---VKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316

Query: 229 ELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288
              + ++  +  +  +E   K+  +  L  +++  + RL  L+   +L         +  
Sbjct: 317 SRLEEEINGIEERI-KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE 375

Query: 289 GSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEK 348
             +   T  +   LE  L   EK   E+  E+  I   +   +     EIK+L   + E 
Sbjct: 376 RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELK----KEIKELKKAIEEL 431

Query: 349 EAA-----------LEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATND 397
           + A            E+ +KEL    T+++    ++  +I +       E  + E     
Sbjct: 432 KKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK 491

Query: 398 EEMSKMESLLLDKNRKMEHELTQLKV-KLSEKTSLLETAEGKIAELTAKINEQQKLIQKL 456
           E        L ++ +++E +L +  + +L +K    E  + K+ +L  +I   +K ++KL
Sbjct: 492 ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL 551

Query: 457 ED 458
           E+
Sbjct: 552 EE 553

Length = 880

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 39/183 (21%), Positives = 84/183 (45%), Gaps = 20/183 (10%)

Query: 103 NAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQST 162
           ++   I           PA+  +    +K  +   E+RK  +  +     A  +K  ++ 
Sbjct: 105 DSQAAIEFPDDLLSAEDPAVPEL----IKGQQSLFESRKSTLRAQLELILA-QIKQLEAE 159

Query: 163 IRRLEERNRQLEQQME---EKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKD 219
           +  L+ + + L QQ+E   E+++   ++K++GL    +  LE   ERE+A      +A+ 
Sbjct: 160 LAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLE-LLE--LERERA------EAQG 210

Query: 220 SVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRS 279
            +  ++   E+ + Q+ E++ +  +     + EV   ++E+  AQ RL  L+   +  R 
Sbjct: 211 ELGRLEAELEVLKRQIDELQLERQQIEQTFREEV---LEELTEAQARLAELRERLNKARD 267

Query: 280 QLQ 282
           +LQ
Sbjct: 268 RLQ 270

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 71/343 (20%), Positives = 137/343 (39%), Gaps = 25/343 (7%)

Query: 123 ASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVK 182
           A I E  LK    +   + +  E EE          Q    ++  ER R+L   + E  +
Sbjct: 164 AEIREVQLKTRTWKDLVKALD-EAEEELANLRKELRQLEKEKQRLERLRRLLPLLAE--R 220

Query: 183 EIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS 242
           + +E +   L E      + ++  E+A  + LR A+ ++  + +  E  Q++L E+    
Sbjct: 221 KALEQQLAALGEVIDLPPDAVERYEEARAE-LRAARRNLELLTERLEALQAELDEISLDE 279

Query: 243 DE-ERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSY 301
           +   + A    ++    E   A+  L   + E    R    +   + G       ++   
Sbjct: 280 ELLAQAAAIEALHQQRGEYRNAEQDLPDREGEIANAREAAAALLAQIGPDA--DEEAVES 337

Query: 302 LENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQA 361
           L  SL+AKE +            T L   +E     +K     L E+E  L+ ++ +L A
Sbjct: 338 LRPSLAAKETV------------TELEKRKEALDQALKSARDALEERERELKQVRAQLAA 385

Query: 362 RPTSKMVDDLRKKVKILQAVG--YNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELT 419
            PT  + + LR  +      G    ++ A + EVA    E+++  S L      +E EL 
Sbjct: 386 LPTVTVPEPLRAALADALRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLE-ELV 444

Query: 420 QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILK 462
            L V  +E+   ++    +  E+     +++  + +LE+D+  
Sbjct: 445 ALPVPSAEQ---VQAFLKEAEEIMQAKRQKRDRLLELEEDLET 484

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 45/246 (18%), Positives = 93/246 (37%), Gaps = 22/246 (8%)

Query: 45  LKIAENQ----ENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKF 100
           L  A+ +    E  ++  R   +  R  ++A  +E  +   +L K  Q+E+  LTK+A+ 
Sbjct: 90  LGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKA-QQELARLTKQAQD 148

Query: 101 GENAFLNI---YQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLK 157
            +     +    ++L          AS  +     ++L+S+   +K+   +   EA +L 
Sbjct: 149 LQTRLKTLAEQRRQLEAQAQS--LQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLA 206

Query: 158 NQQSTIRRLEERNRQLEQQMEEKVKEI----VEIKQRGL-----AEENQKTLEILQEREQ 208
            + +  +   E   +     ++  + I     +I Q+       AE+ ++    LQ  E 
Sbjct: 207 TRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLET 266

Query: 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQ---SDEERVAKQSEVNLLMDEVERAQT 265
           A     ++     A  Q    L Q      R Q      +RVA+         ++  +  
Sbjct: 267 AQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQAQAQAQAQLLSSAN 326

Query: 266 RLLSLQ 271
           R  +L+
Sbjct: 327 RPAALR 332

Length = 499

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 46/235 (19%), Positives = 106/235 (45%), Gaps = 12/235 (5%)

Query: 327 LSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYN-S 385
           L  E E+   E+ +L   L E +  LE+ +KE++       +++LR++++ LQ       
Sbjct: 237 LRKELEELEEELSRLEEELEELQEELEEAEKEIEEL--KSELEELREELEELQEELLELK 294

Query: 386 IEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK 445
            E E+ E       + +    L ++  ++E  L +LK K+      LE  E  + EL   
Sbjct: 295 EEIEELEGEI--SLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352

Query: 446 INEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSM 505
           + E ++  ++LE+ +       +       + +L+E        + +       ++    
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALRE-ELAELEAELAEIRNEL------EELKRE 405

Query: 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560
           ++ +  + +R   RL + +EE+++L+ ++  L  ELE+   +  +L  ++  ++D
Sbjct: 406 IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD 460

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	682
KOG0963	629	consensus Transcription factor/CCAAT displacement	100.0
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	100.0
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.42
KOG0971	1243	consensus Microtubule-associated protein dynactin	99.23
PRK02224	880	chromosome segregation protein; Provisional	99.09
PRK02224	880	chromosome segregation protein; Provisional	99.07
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.03
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.0
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	98.96
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.95
PRK03918	880	chromosome segregation protein; Provisional	98.93
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.8
KOG0963	629	consensus Transcription factor/CCAAT displacement	98.78
KOG4677	554	consensus Golgi integral membrane protein [Intrace	98.76
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.76
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.65
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.65
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.64
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.6
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.57
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.54
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.52
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.49
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.49
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.49
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.45
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.42
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.34
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.32
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.32
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.28
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.26
PRK03918	880	chromosome segregation protein; Provisional	98.22
PRK01156	895	chromosome segregation protein; Provisional	98.21
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.2
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.11
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.1
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.05
PRK04863	1486	mukB cell division protein MukB; Provisional	97.96
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.93
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.87
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.82
KOG1937	521	consensus Uncharacterized conserved protein [Funct	97.8
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.77
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.72
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.71
PHA02562	562	46 endonuclease subunit; Provisional	97.7
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.69
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.69
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.69
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.66
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.65
PRK04778	569	septation ring formation regulator EzrA; Provision	97.65
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.64
PRK11281	1113	hypothetical protein; Provisional	97.55
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.53
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.52
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.45
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.44
PHA02562	562	46 endonuclease subunit; Provisional	97.41
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.29
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.26
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.25
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.24
PRK01156	895	chromosome segregation protein; Provisional	97.2
PRK11637	428	AmiB activator; Provisional	97.14
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.12
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.07
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.06
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.04
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.04
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.03
PF13514	1111	AAA_27: AAA domain	97.01
PRK11637	428	AmiB activator; Provisional	97.0
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	96.92
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.89
PRK10929	1109	putative mechanosensitive channel protein; Provisi	96.87
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.87
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.87
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.85
KOG1003	205	consensus Actin filament-coating protein tropomyos	96.81
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.77
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.77
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.7
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.67
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.61
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.55
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.54
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	96.54
PRK04863	1486	mukB cell division protein MukB; Provisional	96.52
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.45
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	96.35
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.34
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.32
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	96.26
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.23
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.21
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.16
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.16
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.11
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.08
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	96.08
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.94
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.82
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.79
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.77
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	95.54
PRK10698	222	phage shock protein PspA; Provisional	95.53
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.52
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.52
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	95.47
KOG0018	1141	consensus Structural maintenance of chromosome pro	95.41
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.37
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.34
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.29
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	95.16
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.15
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	95.14
PRK09039	343	hypothetical protein; Validated	95.05
PRK09039	343	hypothetical protein; Validated	95.05
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.03
PLN03188	1320	kinesin-12 family protein; Provisional	94.95
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.83
PRK10929	1109	putative mechanosensitive channel protein; Provisi	94.79
COG4372	499	Uncharacterized protein conserved in bacteria with	94.79
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	94.76
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	94.68
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.62
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	94.55
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	94.51
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	94.5
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	94.47
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.42
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.25
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	94.17
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.17
KOG0964	1200	consensus Structural maintenance of chromosome pro	93.97
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.85
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	93.8
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	93.52
COG4942	420	Membrane-bound metallopeptidase [Cell division and	93.27
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	93.16
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	93.08
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.03
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	92.86
COG2433	652	Uncharacterized conserved protein [Function unknow	92.63
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	92.39
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	92.27
KOG0249	916	consensus LAR-interacting protein and related prot	92.13
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	92.0
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	91.97
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	91.95
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	91.75
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	91.67
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	91.59
PRK11281	1113	hypothetical protein; Provisional	91.25
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	91.25
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	91.23
PRK04778	569	septation ring formation regulator EzrA; Provision	91.17
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	91.01
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	90.97
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	90.85
PF13514	1111	AAA_27: AAA domain	90.83
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	90.79
KOG0979	1072	consensus Structural maintenance of chromosome pro	90.43
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	90.39
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	90.29
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	90.21
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	90.12
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	89.85
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	89.68
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	89.63
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.42
KOG0249	916	consensus LAR-interacting protein and related prot	89.3
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	89.14
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	89.09
PF04065	233	Not3: Not1 N-terminal domain, CCR4-Not complex com	88.84
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	88.82
COG4372	499	Uncharacterized protein conserved in bacteria with	88.63
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	88.59
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	88.58
PF03915	424	AIP3: Actin interacting protein 3; InterPro: IPR02	88.47
KOG0018	1141	consensus Structural maintenance of chromosome pro	88.46
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	88.13
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.08
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	87.94
KOG2991	330	consensus Splicing regulator [RNA processing and m	87.54
KOG2150	575	consensus CCR4-NOT transcriptional regulation comp	87.45
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.09
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	86.83
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	86.82
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	86.77
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	86.43
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	86.14
COG2433	652	Uncharacterized conserved protein [Function unknow	85.82
PRK10884	206	SH3 domain-containing protein; Provisional	85.38
PRK10884	206	SH3 domain-containing protein; Provisional	84.68
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	84.42
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	84.12
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	83.53
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	83.12
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	82.92
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	82.8
PF06632	342	XRCC4: DNA double-strand break repair and V(D)J re	82.58
KOG1937	521	consensus Uncharacterized conserved protein [Funct	82.47
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	82.15
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	81.63
PRK10246	1047	exonuclease subunit SbcC; Provisional	81.36
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	81.23
KOG1850	391	consensus Myosin-like coiled-coil protein [Cytoske	80.91
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	80.67

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=100.00  E-value=3.5e-113  Score=931.61  Aligned_cols=619  Identities=42%  Similarity=0.610  Sum_probs=568.2

Q ss_pred             CCChHHHHHhhhhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHHHHhhHHHHHHhHHHHHHHhh
Q 005704           17 SSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTK   96 (682)
Q Consensus        17 ~~~~~~~a~~~W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~eekl~~~~~LLK~yQ~EID~LTk   96 (682)
                      +++++.+++++|+.|||..||+.||++|.+|+++|++|+++||.|++.||+|||++|++|+++++||||+||.|||+||+
T Consensus         1 ~sa~~~~~~~~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~Ltk   80 (629)
T KOG0963|consen    1 SAANVGSVTQYWKRFDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTK   80 (629)
T ss_pred             CcchHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005704           97 RAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQ  176 (682)
Q Consensus        97 RsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~  176 (682)
                      |||+||++||+||+.|+|||||+|+|..+..+..+++..+.|+.+|+.++.+++.+++++++|.++++.|+++++++++.
T Consensus        81 Rsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~  160 (629)
T KOG0963|consen   81 RSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQL  160 (629)
T ss_pred             HHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888888999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHH
Q 005704          177 MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLL  256 (682)
Q Consensus       177 ~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l  256 (682)
                      ++..+...+..++..+...|.++...+.+.+..+++++..++.++..|+..++.+|.++++++++|+++.+++.+|+.++
T Consensus       161 ~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~li  240 (629)
T KOG0963|consen  161 LEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLI  240 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          257 MDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN  336 (682)
Q Consensus       257 ~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~  336 (682)
                      |.|||+|++|+.+||+|++.|+.+++.++++......+   ........|..+|.+|.+|..+++++++++..++..|..
T Consensus       241 m~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~---~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~  317 (629)
T KOG0963|consen  241 MTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKID---DIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKA  317 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC---chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987654333   333566668889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCc-cchhhhhhcchhhhchHHHHHHHHhhhhh
Q 005704          337 EIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSI-EAEDWEVATNDEEMSKMESLLLDKNRKME  415 (682)
Q Consensus       337 ~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~-d~~~~~~a~~~~~~~~LE~lLl~kNrkL~  415 (682)
                      +|..|+.++..+...+.+++.+++.+   +||++||+||.|||+||||.. ++.+|+     ....++|++|++|||+|+
T Consensus       318 qI~~le~~l~~~~~~leel~~kL~~~---sDYeeIK~ELsiLk~ief~~se~a~~~~-----~~~~~leslLl~knr~lq  389 (629)
T KOG0963|consen  318 QISALEKELKAKISELEELKEKLNSR---SDYEEIKKELSILKAIEFGDSEEANDED-----ETAKTLESLLLEKNRKLQ  389 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHHHhhcCCcccccccc-----cccchHHHHHHHHHhhhh
Confidence            99999999999999999999999996   899999999999999999954 333332     235799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCC
Q 005704          416 HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKH  495 (682)
Q Consensus       416 ~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (682)
                      ++++.||+.+..+..++..+....+.+.++..+++.+|++||+|+..++......|.    ..++.+|++..+.+.+..+
T Consensus       390 ~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~~~~~~~~----~~~~~~~~~~~v~e~s~~~  465 (629)
T KOG0963|consen  390 NENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQVSPPAEGA----TARREEGSGQPVPESSIMG  465 (629)
T ss_pred             HHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcccCCCCCcc----hhhhcccCCcCCCcccccC
Confidence            999999999999999999999999999999999999999999999999975443322    2233333443333333221


Q ss_pred             C----CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhcccccccccCC
Q 005704          496 T----YPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGS  571 (682)
Q Consensus       496 ~----~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~~~~~~~~~  571 (682)
                      +    +..+..+.|+|||++||||||.||.+++.+++.....+..+..++.++++||++|||+|||+|+|.+.+      
T Consensus       466 ~~p~~~~~~~~s~~l~ii~~qRdrfr~~n~~~e~~~r~a~~~~~~l~~el~~~~a~n~~lyekir~~q~y~~~~------  539 (629)
T KOG0963|consen  466 GGPSLPNGGVLSRILSVISSQRDRFRARNVELEAQVRLANDKIGFLESELEKLKADNTKLYEKIRYLQSYDGKS------  539 (629)
T ss_pred             CCCCccccccccccchhhhcccchhhhhhhhHHHHHhhccCchhHHhhhhhhhhcccccccccccCccccccCC------
Confidence            1    223566779999999999999999999999999999999999999999999999999999999995532      


Q ss_pred             CCccccccCCCCchhhHHHHHhhhhhcChhhhhhHhHHHHHhhhcCcchhHHHhhhhhhhcchhhHHHHHHHHHHHHHHH
Q 005704          572 KKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLV  651 (682)
Q Consensus       572 ~~~~~~~~~~~~~d~e~~Y~~~YE~~L~Pf~~F~~~E~~r~~~~l~~~er~~l~~~r~vl~nr~~R~~f~~Y~~~LH~lv  651 (682)
                               +...|++.+|..+||++|+||++|+++|+.|+|+.|++++|++++++|++|+||++|++||||||+|||+|
T Consensus       540 ---------~~~~d~e~~y~~~yee~l~p~a~f~k~e~~~k~~~l~~~~~~~~s~~r~~l~nk~~r~~~~~y~i~lh~~v  610 (629)
T KOG0963|consen  540 ---------GESSDVESQYSAAYEESISPFASFRKKERERKYKRLGSFERITLSLGRTLLFNKMTRTLFFFYTIGLHLLV  610 (629)
T ss_pred             ---------CCCcchhhhhhhHHHhhcCHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     33567899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccc
Q 005704          652 FTCLYRMSALSYLS  665 (682)
Q Consensus       652 ~~~ly~~~~~~~~~  665 (682)
                      |+|+|.++|+.+|.
T Consensus       611 ~~~l~~~~~s~~~~  624 (629)
T KOG0963|consen  611 FIVLYLGAASNTMY  624 (629)
T ss_pred             HHHHHHHHhhcccc
Confidence            99999888888776

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=100.00  E-value=4e-60  Score=483.34  Aligned_cols=233  Identities=41%  Similarity=0.614  Sum_probs=191.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccC-------CCCCCCcchh
Q 005704          432 LETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKK-------HTYPDQDQSS  504 (682)
Q Consensus       432 l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~s  504 (682)
                      |+.+++++..++++++++++||++||+||.+++..... ...+++.+.+.+|++..++....+       ++.+.+++++
T Consensus         1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~s   79 (248)
T PF08172_consen    1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSA-SRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSS   79 (248)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccCCCCcccccccchhhccCccccCCCCCCccCCCCCCccc
Confidence            46789999999999999999999999999999975322 223555555555555433322111       1112368999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhccccccccc----CCCCccc--cc
Q 005704          505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISR----GSKKYAE--DL  578 (682)
Q Consensus       505 iL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~~~~~~~----~~~~~~~--~~  578 (682)
                      ||||||+||||||+||.|||+|++++++++..|++|+++|++||+||||||||||||++++....    +.++++.  ..
T Consensus        80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~~~~~~~~~~~~~~~~~~~~~  159 (248)
T PF08172_consen   80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNKGSGSSSSAVSNSPGRSSVSP  159 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcccccCCCCcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999996421111    1122222  22


Q ss_pred             cCCCCchhhH-HHHHhhhhhcChhhhhhHhHHHHHhhhcCcchhHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 005704          579 ESGFTSDIES-KYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYR  657 (682)
Q Consensus       579 ~~~~~~d~e~-~Y~~~YE~~L~Pf~~F~~~E~~r~~~~l~~~er~~l~~~r~vl~nr~~R~~f~~Y~~~LH~lv~~~ly~  657 (682)
                      .++...|++. +|+.+||+.||||++|+++|++|+|++|+|+||+||++||+||+||++|+|||||||+||||||++||+
T Consensus       160 ~~~~~~d~e~~rY~~~YE~~l~PF~~F~~~E~~R~~~~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~  239 (248)
T PF08172_consen  160 EPGGSSDVESNRYSSAYEESLNPFAAFRKRERQRRYKRLSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYY  239 (248)
T ss_pred             CCCCCCchhHHHHHHHHHhccChHHHHhHhhHHHHHhcCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            2233456776 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhcccc
Q 005704          658 MSALSYLS  665 (682)
Q Consensus       658 ~~~~~~~~  665 (682)
                      ++|++++.
T Consensus       240 ~~~~~~~~  247 (248)
T PF08172_consen  240 MSHSTSMQ  247 (248)
T ss_pred             HHhhhhcc
Confidence            99998874

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.42  E-value=3.1e-08  Score=124.19  Aligned_cols=185  Identities=16%  Similarity=0.261  Sum_probs=152.7

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhh----------HHHHHHH
Q 005704          187 IKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAK----------QSEVNLL  256 (682)
Q Consensus       187 ~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~----------~aEle~l  256 (682)
                      +.++..+.+++..++++....+.+++.+.+++.+..+|...+.....+|..+..+.+++.+..          ++.+..+
T Consensus      1030 e~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el 1109 (1930)
T KOG0161|consen 1030 EREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKEL 1109 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788889999999999999999999999999999999999999999999999988774332          5667778


Q ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005704          257 MDEVERAQTRL-------LSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSN  329 (682)
Q Consensus       257 ~~DLEra~~R~-------~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~  329 (682)
                      ..+||..+...       .+|..+++.|+.+|..+...+.++.    +.++..+.++...   .+.|+.++..++..+..
T Consensus      1110 ~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~----e~~~k~e~e~~~l---~~~leee~~~~e~~~~~ 1182 (1930)
T KOG0161|consen 1110 EEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQL----ELNKKREAEVQKL---RRDLEEETLDHEAQIEE 1182 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHH---HHHHHHHHHhHHHHHHH
Confidence            88887753333       6777788888888887755554332    3556777777665   78899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 005704          330 EREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA  380 (682)
Q Consensus       330 ~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~  380 (682)
                      +|..|+..++.|..+++++....+.+++.+..+  ..+.+++..++..+-+
T Consensus      1183 lr~~~~~~~~el~~qle~l~~~k~~lekek~~l--q~e~~~l~~ev~~~~~ 1231 (1930)
T KOG0161|consen 1183 LRKKHADSLAELQEQLEQLQKDKAKLEKEKSDL--QREIADLAAELEQLSS 1231 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999988887  5778888888877653

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=99.23  E-value=1.4e-07  Score=108.02  Aligned_cols=297  Identities=19%  Similarity=0.259  Sum_probs=181.5

Q ss_pred             hhhhhhhHHHHHHHhhhhccCCCC---------HHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005704           95 TKRAKFGENAFLNIYQKLYEAPDP---------YPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRR  165 (682)
Q Consensus        95 TkRsK~aE~aFl~~Y~~L~eaPDP---------~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~  165 (682)
                      .|+ -+++++|++...+- ++|-|         .|++..+.+... +.....+-..|+.++.+|..++..++-+..+   
T Consensus       176 ~kp-~p~~t~~l~~lpPq-~tpaqtPl~sP~~~~P~~Tta~a~v~-l~saskte~eLr~QvrdLtEkLetlR~kR~E---  249 (1243)
T KOG0971|consen  176 QKP-VPAATGELSSLPPQ-ETPAQTPLASPIIPTPVLTTAGAVVP-LPSASKTEEELRAQVRDLTEKLETLRLKRAE---  249 (1243)
T ss_pred             CCC-ChhhhcccccCCCc-cCCCCCCccCCCCCCCCCCCccccCC-CCccccchHHHHHHHHHHHHHHHHHHhhhhh---
Confidence            345 56778998887664 23333         222222211110 0001112334888888888888888766653   


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 005704          166 LEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE  245 (682)
Q Consensus       166 Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee  245 (682)
                      -+.|+++|++-.       ++      -.+++|++.++.++..+|+++|..++...++++..-+           ++-.+
T Consensus       250 Dk~Kl~Elekmk-------iq------leqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke-----------~~k~e  305 (1243)
T KOG0971|consen  250 DKAKLKELEKMK-------IQ------LEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKE-----------RYKEE  305 (1243)
T ss_pred             hHHHHHHHHHHH-------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence            345566665422       11      1457778888899999999999999888887776555           44445


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-----CCCcCchhhhHhhhhhhHHHHHHHHHHH
Q 005704          246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRN-----SDTLDSNSYLENSLSAKEKIISELNSEL  320 (682)
Q Consensus       246 ~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~-----~~~~~~~s~le~el~~ke~ei~~L~~e~  320 (682)
                      .+..++-|||++-|-|.|..|+..|+.+++.|++.+.+..-+.+...     .++..        ...-..+..+|+..|
T Consensus       306 mad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~--------~~~ss~qfkqlEqqN  377 (1243)
T KOG0971|consen  306 MADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDG--------QAASSYQFKQLEQQN  377 (1243)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--------cccchHHHHHHHHHH
Confidence            55556677888888888877777777777777777666555433210     00000        111244688999999


Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcch
Q 005704          321 HNIETALSNEREQHMNEI---KKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATND  397 (682)
Q Consensus       321 ~~Le~~L~~~r~~~~~~~---~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~  397 (682)
                      .+|...|..+|+..+.+.   .++...++.++.++.+|...++.+  ....|.....+.-||.-    +|      |..|
T Consensus       378 ~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~L--sr~~d~aEs~iadlkEQ----VD------AAlG  445 (1243)
T KOG0971|consen  378 ARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERL--SRELDQAESTIADLKEQ----VD------AALG  445 (1243)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----HH------Hhhc
Confidence            999999999999877654   555555666666666666655544  12333333333333321    11      2132


Q ss_pred             hhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          398 EEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTA  444 (682)
Q Consensus       398 ~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~  444 (682)
                      . ..++++ |.+||-.|+..+-.|+..+.+++. ++++..++.+-+.
T Consensus       446 A-E~MV~q-LtdknlnlEekVklLeetv~dlEa-lee~~EQL~Esn~  489 (1243)
T KOG0971|consen  446 A-EEMVEQ-LTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQESNR  489 (1243)
T ss_pred             H-HHHHHH-HHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            2 456777 999999999999999988888764 3444444444433

>PRK02224 chromosome segregation protein; Provisional

Probab=99.09  E-value=4.4e-05  Score=93.09  Aligned_cols=103  Identities=13%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccccccc
Q 005704          410 KNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSE  489 (682)
Q Consensus       410 kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (682)
                      +...+..++..++....+.....+.+......+..++.++...+..++.++..+.. ..                     
T Consensus       538 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~-~~---------------------  595 (880)
T PRK02224        538 RAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IR---------------------  595 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------------------
Confidence            34455566666666665555555555555555555556666666666665555542 11                     


Q ss_pred             ccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704          490 KADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK  545 (682)
Q Consensus       490 ~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk  545 (682)
                                 ....-+.-+....++++.+..+|+.........+..++.+++.+.
T Consensus       596 -----------~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~  640 (880)
T PRK02224        596 -----------TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE  640 (880)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       233344556666666666666666666666666777777776664

>PRK02224 chromosome segregation protein; Provisional

Probab=99.07  E-value=0.0001  Score=90.05  Aligned_cols=172  Identities=14%  Similarity=0.239  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          206 REQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDE---ERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ  282 (682)
Q Consensus       206 re~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~e---e~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~  282 (682)
                      ....+...+..++..+..++..+...+.++.++.....+   ........++.+..+++.++.++..++.....++..|.
T Consensus       364 ~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~  443 (880)
T PRK02224        364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE  443 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444455555554444444444444333221   11122344555566666666666666666666666666


Q ss_pred             hhhhhhccCCC---C-CcC------chhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 005704          283 SANDEAGSRNS---D-TLD------SNSYLENSLSAKEKIISELNSELHNIETALSNEREQ--HMNEIKKLNALLIEKEA  350 (682)
Q Consensus       283 ~a~s~~~~~~~---~-~~~------~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~--~~~~~~~L~~ql~~~~~  350 (682)
                      .+.........   . +++      ....+...+......+..|+.++..+...+..+...  ...++..+...+..+..
T Consensus       444 ~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~  523 (880)
T PRK02224        444 EAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEE  523 (880)
T ss_pred             HHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65531111100   0 111      111232333333334444454444444443332222  12233444444444444


Q ss_pred             HHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 005704          351 ALEDMKKELQARPTSKMVDDLRKKVKILQ  379 (682)
Q Consensus       351 ~~~~le~~l~~~~~~sDyeelK~EL~~Lk  379 (682)
                      .+......++..  ...|++++.++.-|+
T Consensus       524 ~~~~~~e~le~~--~~~~~~l~~e~~~l~  550 (880)
T PRK02224        524 LIAERRETIEEK--RERAEELRERAAELE  550 (880)
T ss_pred             HHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence            444333333332  345777777777774

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.03  E-value=1e-05  Score=101.15  Aligned_cols=24  Identities=8%  Similarity=0.004  Sum_probs=19.1

Q ss_pred             CCCchhhHHHHHhhhhhcChhhhh
Q 005704          581 GFTSDIESKYKKMYEDDINPFAAF  604 (682)
Q Consensus       581 ~~~~d~e~~Y~~~YE~~L~Pf~~F  604 (682)
                      ++.+.++..|..+.+..|++...+
T Consensus       528 ~dli~v~~~y~~Aie~~lg~~l~~  551 (1164)
T TIGR02169       528 AQLGSVGERYATAIEVAAGNRLNN  551 (1164)
T ss_pred             HHhcCcCHHHHHHHHHHhhhhhCC
Confidence            556677889999999999986533

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00606 rad50 rad50

Probab=99.00  E-value=6.8e-05  Score=95.01  Aligned_cols=42  Identities=12%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             hHHHHHhhhhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHH
Q 005704           20 PVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAE   63 (682)
Q Consensus        20 ~~~~a~~~W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~   63 (682)
                      .|...+..| ..+ +.++..++....+|...+++.....+.+.+
T Consensus       561 ~~~~~~~~~-~~~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~  602 (1311)
T TIGR00606       561 ELTSLLGYF-PNK-KQLEDWLHSKSKEINQTRDRLAKLNKELAS  602 (1311)
T ss_pred             HHHHhcCCC-CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555577 666 888999999999998888888877777754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=98.96  E-value=4e-06  Score=95.87  Aligned_cols=119  Identities=23%  Similarity=0.247  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHhh---HHHHHHhhhcccccccccCCCCccccccCCCCchhhHHHHHhhhhhc
Q 005704          522 ETEEEVRQLKEKIGVLTAELEKTKADNVQL---YGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDI  598 (682)
Q Consensus       522 ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kL---yEkiRylqsy~~~~~~~~~~~~~~~~~~~~~~~d~e~~Y~~~YE~~L  598 (682)
                      ++|..++.+...+..++..++.|-+.+..|   +|++...  |.+......+.......+  ....|+..+  ..---..
T Consensus       389 elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~--l~~~~~~~~~~~~~~~~~--~~~~d~~~r--~~~~~~~  462 (511)
T PF09787_consen  389 ELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQ--LKEEASNNRPSSILMKYS--NSEDDAESR--VPLLMKD  462 (511)
T ss_pred             hHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHH--HHhhccCCCCchhhHhhc--cCCCchhhh--hhhhccC
Confidence            577778888888888888888888888888   6666542  211110000000000011  112333333  1112223


Q ss_pred             ChhhhhhHhHHHHH-hhhcCcchhHHHhhhhhhhcchhhHHHHHHHHHHHHHH
Q 005704          599 NPFAAFSKKERDQR-YKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVL  650 (682)
Q Consensus       599 ~Pf~~F~~~E~~r~-~~~l~~~er~~l~~~r~vl~nr~~R~~f~~Y~~~LH~l  650 (682)
                      +||...    ..|+ .+.++.+|.+.+.+|.|+-+++.+|.||++||+.||+|
T Consensus       463 ~~~d~~----~~~r~~~a~~~iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW  511 (511)
T PF09787_consen  463 SPHDIG----VARRVKRAASVIDSFSIRLGIFLRRYPMARIFVIIYMALLHLW  511 (511)
T ss_pred             CCccch----HHHHHHHHHHHHhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence            444331    2333 66799999999999999999999999999999999987

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.95  E-value=1.1e-05  Score=86.51  Aligned_cols=288  Identities=18%  Similarity=0.265  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          143 KIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSV  221 (682)
Q Consensus       143 ~~el~~l~~el~~lknq~~-~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l  221 (682)
                      +.++..||..|+.    |. -++.|+.....|+.+...        ....+......-...|......+..+|..+....
T Consensus         3 K~eL~~LNdRla~----YIekVr~LE~~N~~Le~~i~~--------~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~ek   70 (312)
T PF00038_consen    3 KEELQSLNDRLAS----YIEKVRFLEQENKRLESEIEE--------LREKKGEEVSRIKEMYEEELRELRRQIDDLSKEK   70 (312)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHH--------HHhcccccCcccccchhhHHHHhHHhhhhHHHHh
Confidence            3456667777766    33 445555555555444322        2222223333334556777778888888888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhcchHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-------cC
Q 005704          222 ATMQKLHELAQSQLFEVRAQSDEERV---AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG-------SR  291 (682)
Q Consensus       222 ~eL~~~le~~Q~eL~~l~~k~~ee~~---a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~-------~~  291 (682)
                      ..+...++..+.++.+++.+++.+..   ....++..+..+++.+.....+|+.++..|.++|...+..-.       .+
T Consensus        71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~  150 (312)
T PF00038_consen   71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQ  150 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence            88888888888888899888887743   346889999999999999999999999999999987765321       11


Q ss_pred             C--CCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhH
Q 005704          292 N--SDTLDSNSYLENSLSAKEKIISELNSELHNIETA-LSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMV  368 (682)
Q Consensus       292 ~--~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~-L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDy  368 (682)
                      .  ...++.......++...   +.++..++...-.. .......+...+..+..+.......+..++.++...  ...+
T Consensus       151 ~~~~~~~e~~~~~~~dL~~~---L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~--r~~~  225 (312)
T PF00038_consen  151 IQSSVTVEVDQFRSSDLSAA---LREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKEL--RRQI  225 (312)
T ss_dssp             ----------------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred             cccccceeecccccccchhh---hhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHH--Hhhh
Confidence            1  11111111111223222   55555555433332 223333455555666655555444444444444333  3344


Q ss_pred             HHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          369 DDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE  448 (682)
Q Consensus       369 eelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~  448 (682)
                      ..+..+|..|+..                  ...|+..|.+-...+..++..+...+..++.++..+..++.....++++
T Consensus       226 ~~l~~el~~l~~~------------------~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~  287 (312)
T PF00038_consen  226 QSLQAELESLRAK------------------NASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQE  287 (312)
T ss_dssp             HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhhhhccccc------------------hhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence            5555555555432                  4578888888888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 005704          449 QQKLIQKLEDDILKGYS  465 (682)
Q Consensus       449 ~~~l~~kLE~DL~~~~~  465 (682)
                      +-...-.|+..|.+...
T Consensus       288 Ll~~K~~Ld~EIatYR~  304 (312)
T PF00038_consen  288 LLDVKLALDAEIATYRK  304 (312)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHH
Confidence            99999999999887764

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK03918 chromosome segregation protein; Provisional

Probab=98.93  E-value=0.00047  Score=84.19  Aligned_cols=29  Identities=17%  Similarity=0.266  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          250 QSEVNLLMDEVERAQTRLLSLQREKDLLR  278 (682)
Q Consensus       250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr  278 (682)
                      ..+++.+...+...+.++..++.+...++
T Consensus       458 ~~ei~~l~~~~~~l~~~~~~l~~~~~~~~  486 (880)
T PRK03918        458 TAELKRIEKELKEIEEKERKLRKELRELE  486 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555554443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.80  E-value=0.0011  Score=84.52  Aligned_cols=50  Identities=24%  Similarity=0.345  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHh
Q 005704          509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV  558 (682)
Q Consensus       509 vt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRyl  558 (682)
                      +..-+|.-......++.++..+...+..+...++.++.+|-+|-..|.-+
T Consensus      1454 l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl 1503 (1930)
T KOG0161|consen 1454 LQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL 1503 (1930)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444433

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=98.78  E-value=0.00011  Score=82.84  Aligned_cols=298  Identities=18%  Similarity=0.217  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          144 IELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT  223 (682)
Q Consensus       144 ~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~e  223 (682)
                      .++.++..++.++.+-..+++.++.+++.++....+.-...-...++.....+.+..++|.++++.|.+.......++..
T Consensus       121 ~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~  200 (629)
T KOG0963|consen  121 EENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEE  200 (629)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999998888877777888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhH
Q 005704          224 MQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLE  303 (682)
Q Consensus       224 L~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le  303 (682)
                      +.......|..+.+......+-......|+.....++.-.-..+++.+.++..|..+.+.........++.     ..+.
T Consensus       201 le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~-----~~~~  275 (629)
T KOG0963|consen  201 LEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSS-----KKLA  275 (629)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hhhc
Confidence            99999999999888877665555555778888888888899999999999999999999888877544321     1222


Q ss_pred             --hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 005704          304 --NSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV  381 (682)
Q Consensus       304 --~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~i  381 (682)
                        -.+.+......+++.++..|...+..++..+...+.....+|..+..       ++...  .+..++++..|.--   
T Consensus       276 ~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~-------~l~~~--~~~leel~~kL~~~---  343 (629)
T KOG0963|consen  276 KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEK-------ELKAK--ISELEELKEKLNSR---  343 (629)
T ss_pred             cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH--HHHHHHHHHHHhhh---
Confidence              33555666677889999999999999988888888777766666544       43332  24466667666533   


Q ss_pred             cccCccchhhhh------hc-ch-hhhchHHHHHHHHhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          382 GYNSIEAEDWEV------AT-ND-EEMSKMESLLLDKNRKMEHELT----QLKVKLSEKTSLLETAEGKIAELTAKINEQ  449 (682)
Q Consensus       382 Ef~~~d~~~~~~------a~-~~-~~~~~LE~lLl~kNrkL~~eLt----~LR~~~~~l~~~l~~l~~~~~~l~~el~~~  449 (682)
                          .|-++...      +. -| .....-+.   +--+.+++-|.    .|..++..|......+...+..+....+++
T Consensus       344 ----sDYeeIK~ELsiLk~ief~~se~a~~~~---~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el  416 (629)
T KOG0963|consen  344 ----SDYEEIKKELSILKAIEFGDSEEANDED---ETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEEL  416 (629)
T ss_pred             ----ccHHHHHHHHHHHHHhhcCCcccccccc---cccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhh
Confidence                23333210      00 00 00111111   22234444443    333444444444444555555555555555


Q ss_pred             HHHHHHHHHHHHhhcc
Q 005704          450 QKLIQKLEDDILKGYS  465 (682)
Q Consensus       450 ~~l~~kLE~DL~~~~~  465 (682)
                      .........=+.....
T Consensus       417 ~~~~~~~ke~i~klE~  432 (629)
T KOG0963|consen  417 EAKATEQKELIAKLEQ  432 (629)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            5555555544444443

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=98.76  E-value=1.7e-05  Score=85.38  Aligned_cols=211  Identities=15%  Similarity=0.055  Sum_probs=128.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccc
Q 005704          413 KMEHELTQLKVKLSEKTSLLETAEG----KIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELS  488 (682)
Q Consensus       413 kL~~eLt~LR~~~~~l~~~l~~l~~----~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (682)
                      +++.+++.||.++.+++.....++.    ++...--+++.....+.-|+..++-......     +.+..+..-|-    
T Consensus       327 ~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e-----~~~~~~~r~~~----  397 (554)
T KOG4677|consen  327 HIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETE-----AEGTFSSRVNL----  397 (554)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHH-----Hhhhhhhhccc----
Confidence            4677778888888877776665554    3334444455555666666666655543221     00111100000    


Q ss_pred             cccccCCCCCCCcchhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhccc
Q 005704          489 EKADKKHTYPDQDQSSMLKVICNQRDRFRAR-----LRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNN  563 (682)
Q Consensus       489 ~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r-----~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~  563 (682)
                              .-.+.....-..+++-+-|++.|     ..+|+.-++++..++-..+..+..+=.-|-+|-=.+.-||-|-+
T Consensus       398 --------~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N  469 (554)
T KOG4677|consen  398 --------KKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVN  469 (554)
T ss_pred             --------hhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Confidence                    00001111223455555555444     45788889999999999999999999888888878888898877


Q ss_pred             cccccc-CCCCccccccCCCCchhhHHHHHhhhhhcChhhhhhHhHHHHHhhhcCcchhHHHhhhhhhhcchhhHHHHHH
Q 005704          564 EKVISR-GSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFF  642 (682)
Q Consensus       564 ~~~~~~-~~~~~~~~~~~~~~~d~e~~Y~~~YE~~L~Pf~~F~~~E~~r~~~~l~~~er~~l~~~r~vl~nr~~R~~f~~  642 (682)
                      .+.... ....+.    .+.+.++.          +.-|.+-.-  ++.-...++..|+..+.++.++-+.+.+|.||..
T Consensus       470 ~~~~v~~~~~~n~----~~~~~~~v----------~~l~~d~~~--~~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~  533 (554)
T KOG4677|consen  470 LVEDVDTKLNLNT----KFKCHDVV----------IDLYRDLKD--RQQLRAARSKVDKGSAELEKILRLLPSARIFWKN  533 (554)
T ss_pred             cccccceeeccCC----Cccccccc----------chHhhhhhh--hHHHHHHHhhcchhhHHHHHHHhcCchhHHHHHH
Confidence            432111 000000    01111111          111111111  2445567899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 005704          643 YTILLHVLVFTCLY  656 (682)
Q Consensus       643 Y~~~LH~lv~~~ly  656 (682)
                      |+++||+|||+|+.
T Consensus       534 YmallHLWvmivlL  547 (554)
T KOG4677|consen  534 YMALLHLWVMIVLL  547 (554)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999886

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.76  E-value=0.00023  Score=80.40  Aligned_cols=181  Identities=22%  Similarity=0.260  Sum_probs=109.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 005704          248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETAL  327 (682)
Q Consensus       248 a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L  327 (682)
                      ....|++.+..+|-.++.++..-++.++-|+.+|.++...-.           ...++|..-..+..+|..........|
T Consensus       280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RD-----------rt~aeLh~aRLe~aql~~qLad~~l~l  348 (546)
T PF07888_consen  280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRD-----------RTMAELHQARLEAAQLKLQLADASLEL  348 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            345777788888888888888888888888888876654431           333444444334444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHH
Q 005704          328 SNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLL  407 (682)
Q Consensus       328 ~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lL  407 (682)
                      ...+.....+...|.......+..                +.+|++|+..+..-    ...+       -.+...|+.-|
T Consensus       349 ke~~~q~~qEk~~l~~~~e~~k~~----------------ie~L~~el~~~e~~----lqEe-------r~E~qkL~~ql  401 (546)
T PF07888_consen  349 KEGRSQWAQEKQALQHSAEADKDE----------------IEKLSRELQMLEEH----LQEE-------RMERQKLEKQL  401 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH----------------HHHHHHHHHHHHHH----HHHH-------HHHHHHHHHHH
Confidence            444444444444443333333233                44444444444421    0000       00122344444


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704          408 LDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS  466 (682)
Q Consensus       408 l~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~  466 (682)
                      ...+..=.-.|...+..+.++++.+.-++.+...+..+.+++..-|.+||..|..+-+.
T Consensus       402 ~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~  460 (546)
T PF07888_consen  402 GKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADE  460 (546)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            22222122367888888999999999999999999999999999999999999998654

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.65  E-value=0.0037  Score=78.73  Aligned_cols=391  Identities=20%  Similarity=0.258  Sum_probs=206.4

Q ss_pred             hhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHH
Q 005704           98 AKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQS----TIRRLEERNRQL  173 (682)
Q Consensus        98 sK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~----~~~~Lkerl~~l  173 (682)
                      +-.+|.....+|+++.             ....+.+.+..+...++.++.++..++..+.+...    ++++++..+-.+
T Consensus        47 ~v~~eq~~~~~ekK~~-------------~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l  113 (1822)
T KOG4674|consen   47 EVNHEQQLSELEKKIL-------------RLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQL  113 (1822)
T ss_pred             hhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHH
Confidence            3345555555555543             22344556777888888888888888887665543    556666655556


Q ss_pred             HHHHHHhHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---hHHHHhh
Q 005704          174 EQQMEEKVKEIV-EIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS---DEERVAK  249 (682)
Q Consensus       174 E~~~e~~~~~~~-~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~---~ee~~a~  249 (682)
                      .+.+.+....+- -...-++   ....+.......+.|..++..+-..+-++.+.+..++...-..+.++   .++....
T Consensus       114 ~~~~se~~~qkr~l~~~le~---~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll  190 (1822)
T KOG4674|consen  114 RRAKSELQEQKRQLMELLER---QKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLL  190 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555544442211 1111111   11122233445566667777777777777776666555544433332   3444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHH
Q 005704          250 QSEVNLLMDEVERAQTRLLSLQRE----KDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIET  325 (682)
Q Consensus       250 ~aEle~l~~DLEra~~R~~~LE~e----~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~  325 (682)
                      ..+.--|..||-..+.++..+.++    +..|++.|......-..           +......+..+..+|..-+..+..
T Consensus       191 ~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~-----------~q~~~~~l~q~~~eLs~~ie~~~~  259 (1822)
T KOG4674|consen  191 ESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAE-----------LQEKNKSLKQQNEELSKKIESLNL  259 (1822)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666667777777777777777777    77777777766554321           111111111112222222222222


Q ss_pred             HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHhcCCChhhH----------------
Q 005704          326 ALSNEREQHMNEI---------------------KKLNALLIEKEAALEDMKKELQARPTSKMV----------------  368 (682)
Q Consensus       326 ~L~~~r~~~~~~~---------------------~~L~~ql~~~~~~~~~le~~l~~~~~~sDy----------------  368 (682)
                      .+..++++.....                     .++.....++.+.+..+++.+...  ...|                
T Consensus       260 ~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~--~~~~~e~~d~l~e~~~sl~~  337 (1822)
T KOG4674|consen  260 ELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDA--SERNKENTDQLKELEQSLSK  337 (1822)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHH
Confidence            2222222222222                     222222222223333333333322  0111                


Q ss_pred             --HHHHHHHHHHHh-ccccCccchhhhhhcchhhhchHH--HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          369 --DDLRKKVKILQA-VGYNSIEAEDWEVATNDEEMSKME--SLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELT  443 (682)
Q Consensus       369 --eelK~EL~~Lk~-iEf~~~d~~~~~~a~~~~~~~~LE--~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~  443 (682)
                        +.+..++.-|.. ++-+.    +...+ . ...+++.  ..+..++.+....|+.++.....++..+..+.-++.++.
T Consensus       338 ~~~~~~k~~~~le~~l~~an----~~~~~-~-~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~  411 (1822)
T KOG4674|consen  338 LNEKLEKKVSRLEGELEDAN----DSLSA-T-GESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQ  411 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHhhh----hhHHh-h-cccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              122222222221 11111    10001 0 1122332  456789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 005704          444 AKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRET  523 (682)
Q Consensus       444 ~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~EL  523 (682)
                      ..+......+..+..-|........                                ..+.-.--+..++|-..+.+..+
T Consensus       412 ~~l~s~~eev~~~~p~lk~qr~~~e--------------------------------~~~~~~~~l~~el~~~~q~~~~~  459 (1822)
T KOG4674|consen  412 NILSSFKEEVKQKAPILKEQRSELE--------------------------------RMQETKAELSEELDFSNQKIQKL  459 (1822)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888887777766654432                                12223344455555555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 005704          524 EEEVRQLKEKIGVLTAELEKTKADNVQLYGKI  555 (682)
Q Consensus       524 E~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEki  555 (682)
                      |..+..+......+.+++..+..++-.|-.-|
T Consensus       460 e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv  491 (1822)
T KOG4674|consen  460 EKELESLKKQLNDLERENKLLEQQISDLSRQV  491 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666655555554444

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.65  E-value=0.0016  Score=77.18  Aligned_cols=46  Identities=35%  Similarity=0.389  Sum_probs=33.8

Q ss_pred             hhhhHHhhHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHHHH
Q 005704          132 LSELESENRKMKIELEEYRTEATHLKNQQST----IRRLEERNRQLEQQM  177 (682)
Q Consensus       132 ~~~le~E~~kL~~el~~l~~el~~lknq~~~----~~~Lkerl~~lE~~~  177 (682)
                      ++.+..++.+-..++..+++++.++.++..+    |+.|++.++..++..
T Consensus       289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~  338 (775)
T PF10174_consen  289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEA  338 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4557777777777888888888888877654    677777777776655

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.64  E-value=0.0014  Score=82.13  Aligned_cols=16  Identities=31%  Similarity=0.318  Sum_probs=10.8

Q ss_pred             CCCCCCCChHHHHHhh
Q 005704           12 KPNTSSSSPVSVISNF   27 (682)
Q Consensus        12 ~~~~~~~~~~~~a~~~   27 (682)
                      .++|++-|++-.|+.+
T Consensus        30 G~NGsGKS~ildAi~~   45 (1164)
T TIGR02169        30 GPNGSGKSNIGDAILF   45 (1164)
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            4556667777777764

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.60  E-value=0.0018  Score=76.80  Aligned_cols=184  Identities=21%  Similarity=0.269  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------chH---HHHhhHHHHHHH
Q 005704          193 AEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQ-------------SDE---ERVAKQSEVNLL  256 (682)
Q Consensus       193 ~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k-------------~~e---e~~a~~aEle~l  256 (682)
                      +....-+...|++....++.....+...+..|+..+ ..|.++..+...             +|.   ......+|.+.+
T Consensus        48 rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~  126 (775)
T PF10174_consen   48 RKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERL  126 (775)
T ss_pred             HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHH
Confidence            333333444444444444444455555555555555 444443322221             111   122234566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-------CC--CCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 005704          257 MDEVERAQTRLLSLQREKDLLRSQLQSANDEAGS-------RN--SDTLDSNSYLENSLSAKEKIISELNSELHNIETAL  327 (682)
Q Consensus       257 ~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~-------~~--~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L  327 (682)
                      ..|++..+..+..++.+++.++..|..+......       .+  +.........-..+...+..+.+|+.-....+...
T Consensus       127 ~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~  206 (775)
T PF10174_consen  127 QRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEH  206 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666666666666666666666655554321       10  00000000111123333444555555555554444


Q ss_pred             HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh-ccccCc
Q 005704          328 SNEREQHMNE---------IKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA-VGYNSI  386 (682)
Q Consensus       328 ~~~r~~~~~~---------~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~-iEf~~~  386 (682)
                      ..+|......         ...++..|+.+...+..+++.+..         +..|+..|++ ++.+..
T Consensus       207 ~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~---------le~Ei~~L~~~~~~~~~  266 (775)
T PF10174_consen  207 MEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRD---------LEDEIYRLRSRGELSEA  266 (775)
T ss_pred             hhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhccccccc
Confidence            3333322221         124566666777777777776554         5677778876 444433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.57  E-value=0.0024  Score=79.92  Aligned_cols=19  Identities=5%  Similarity=-0.001  Sum_probs=13.2

Q ss_pred             HhhhcCcchhHHHhhhhhh
Q 005704          612 RYKELGIRDRITLSSGRFL  630 (682)
Q Consensus       612 ~~~~l~~~er~~l~~~r~v  630 (682)
                      ....||..++..+.+++.+
T Consensus      1086 ~~~~lS~g~~~~~~l~~~~ 1104 (1179)
T TIGR02168      1086 NLSLLSGGEKALTALALLF 1104 (1179)
T ss_pred             cccccCccHHHHHHHHHHH
Confidence            4556777777777777765

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=98.54  E-value=0.01  Score=75.57  Aligned_cols=74  Identities=20%  Similarity=0.170  Sum_probs=40.8

Q ss_pred             HhHHHHHHHhhhhhhhHHHHHHHhhhh-ccCCCCHHHHHHHHHHHh-hhhhhHHhhHHHHHHHHHHHHHHHHhhhh
Q 005704           86 GYQEEVDNLTKRAKFGENAFLNIYQKL-YEAPDPYPALASIAEQDL-KLSELESENRKMKIELEEYRTEATHLKNQ  159 (682)
Q Consensus        86 ~yQ~EID~LTkRsK~aE~aFl~~Y~~L-~eaPDP~PlLe~s~~~~~-~~~~le~E~~kL~~el~~l~~el~~lknq  159 (682)
                      .++..++.|..+-+......=.++..+ -+.|||..-|....+... ++...+.+...+..++..++.++..+..+
T Consensus       266 ~l~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~  341 (1311)
T TIGR00606       266 KLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQE  341 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777665555555555555544 357888887776666433 23334444444445555554444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.52  E-value=1.8e-08  Score=121.25  Aligned_cols=215  Identities=19%  Similarity=0.280  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchHHHHhh----------HHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHH
Q 005704          218 KDSVATMQKLHELAQSQLFEVRAQSDEERVAK----------QSEVNLLMDEVERAQ---TRL----LSLQREKDLLRSQ  280 (682)
Q Consensus       218 e~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~----------~aEle~l~~DLEra~---~R~----~~LE~e~E~Lr~e  280 (682)
                      ++...+|...+.....+|..+..+++++.+.+          .+.|+.|..|||..+   .++    .+|..+++.|+.+
T Consensus         3 ~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~   82 (859)
T PF01576_consen    3 ERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKER   82 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666667777776664332          567788888888762   233    7899999999999


Q ss_pred             HHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704          281 LQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ  360 (682)
Q Consensus       281 L~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~  360 (682)
                      |..+.+.+..+.    +.+..+++++..+   ..+|++....+++.+..+|.+|...+..|..+++++......+++.+.
T Consensus        83 Lee~~~~t~aq~----E~~kkrE~El~~L---rr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~  155 (859)
T PF01576_consen   83 LEEAGGATQAQI----ELNKKREAELAKL---RRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKS  155 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhhCcHHhhH----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999887664    5777898999877   889999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          361 ARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIA  440 (682)
Q Consensus       361 ~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~  440 (682)
                      .+  ..+.+++..+|+.+..--...                      -.+.|.++.+|..++..+.+....+..+.....
T Consensus       156 ~l--~~e~~dL~~~l~~~~k~k~~~----------------------Ek~~K~lE~qL~El~~klee~er~~~el~~~k~  211 (859)
T PF01576_consen  156 QL--EAELDDLQAQLDSLQKAKQEA----------------------EKKRKQLEAQLNELQAKLEESERQRNELTEQKA  211 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HH--HhHHHHHHHHHHHHHHHHHHH----------------------HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88  578888888888777532211                      112455555566666555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 005704          441 ELTAKINEQQKLIQKLEDDILKG  463 (682)
Q Consensus       441 ~l~~el~~~~~l~~kLE~DL~~~  463 (682)
                      .+.+++.++...+..+|..+..+
T Consensus       212 kL~~E~~eL~~qLee~e~~~~~l  234 (859)
T PF01576_consen  212 KLQSENSELTRQLEEAESQLSQL  234 (859)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555444444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.49  E-value=0.01  Score=74.29  Aligned_cols=16  Identities=13%  Similarity=0.356  Sum_probs=9.5

Q ss_pred             chhhHHHHHhhhhhcC
Q 005704          584 SDIESKYKKMYEDDIN  599 (682)
Q Consensus       584 ~d~e~~Y~~~YE~~L~  599 (682)
                      +.+...|..+.+..++
T Consensus       529 i~~~~~~~~a~~~~~g  544 (1179)
T TIGR02168       529 ISVDEGYEAAIEAALG  544 (1179)
T ss_pred             eeeChhHHHHHHHHHH
Confidence            3444677777776443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.49  E-value=0.0045  Score=77.88  Aligned_cols=50  Identities=16%  Similarity=0.245  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhcc
Q 005704          508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYN  562 (682)
Q Consensus       508 Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~  562 (682)
                      -.-.+.++++.|..+|..+...+...+..++.-+..+..     .-+-+|...|.
T Consensus       967 ~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~-----~~~~~f~~~f~ 1016 (1163)
T COG1196         967 RAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDK-----EKRERFKETFD 1016 (1163)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence            345667777777777777777777777777777777766     12345566664

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.49  E-value=0.0033  Score=79.10  Aligned_cols=94  Identities=18%  Similarity=0.227  Sum_probs=48.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhcccc----ccccc---CCCCc
Q 005704          502 QSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE----KVISR---GSKKY  574 (682)
Q Consensus       502 ~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~~----~~~~~---~~~~~  574 (682)
                      ....+..+..+....+.+..+++.++......+..+..++..++.       ++.-++.....    .....   ..-+|
T Consensus       444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~G  516 (1163)
T COG1196         444 LNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA-------RLDRLEAEQRASQGVRAVLEALESGLPG  516 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhHHHHHHHHhccCCC
Confidence            444555666666666666666666666666666666666665555       22221111100    00000   00011


Q ss_pred             cccccCCCCchhhHHHHHhhhhhcChhhh
Q 005704          575 AEDLESGFTSDIESKYKKMYEDDINPFAA  603 (682)
Q Consensus       575 ~~~~~~~~~~d~e~~Y~~~YE~~L~Pf~~  603 (682)
                      . ..+.++.+.+..+|..+.+..|++=.+
T Consensus       517 v-~G~v~~li~v~~~y~~Aie~alG~~l~  544 (1163)
T COG1196         517 V-YGPVAELIKVKEKYETALEAALGNRLQ  544 (1163)
T ss_pred             c-cchHHHhcCcChHHHHHHHHHcccccC
Confidence            1 011145566777999999999885433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.45  E-value=0.016  Score=73.15  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704          253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (682)
Q Consensus       253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~  288 (682)
                      ...+...-+.+...+..+.++.+.++.++++...-.
T Consensus       499 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L  534 (1201)
T PF12128_consen  499 EQELRKERDQAEEELRQARRELEELRAQIAELQRQL  534 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444444455555666666666666666665544

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.42  E-value=0.00098  Score=71.47  Aligned_cols=108  Identities=18%  Similarity=0.257  Sum_probs=80.7

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccc
Q 005704          402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSE  481 (682)
Q Consensus       402 ~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~  481 (682)
                      .++.....+-..+......-.........++..+...+..+..++..++..+..||..|..+...               
T Consensus       188 e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~---------------  252 (312)
T PF00038_consen  188 ELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR---------------  252 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred             hhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH---------------
Confidence            34555555555566566666666666777777777777777777777888888888887766532               


Q ss_pred             ccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 005704          482 AGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQL  551 (682)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kL  551 (682)
                                                 +..+++.|...+..++.++......+.....++..|-.-++.|
T Consensus       253 ---------------------------~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~L  295 (312)
T PF00038_consen  253 ---------------------------LDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLAL  295 (312)
T ss_dssp             ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence                                       3577888999999999999999999999988888888876666

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.34  E-value=0.013  Score=67.51  Aligned_cols=292  Identities=16%  Similarity=0.187  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 005704          213 QLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERV---AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG  289 (682)
Q Consensus       213 ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~---a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~  289 (682)
                      +|+.++.+....-+.|.....+|..++..++.-..   ....+.+....-.+-...++.+|..++..|++.|..+.....
T Consensus       117 ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~  196 (522)
T PF05701_consen  117 ELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHI  196 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444455555555554443322   223444555555555666777777777777777776544321


Q ss_pred             cCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH
Q 005704          290 SRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVD  369 (682)
Q Consensus       290 ~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDye  369 (682)
                      ..       ......-...++..+..+..+....           ...+..|..++.    ....|+.++..-  ..+..
T Consensus       197 eA-------eee~~~~~~~~~~~~~~~~~~leea-----------e~~l~~L~~e~~----~~k~Le~kL~~a--~~~l~  252 (522)
T PF05701_consen  197 EA-------EEERIEIAAEREQDAEEWEKELEEA-----------EEELEELKEELE----AAKDLESKLAEA--SAELE  252 (522)
T ss_pred             HH-------HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH----HHHHHHHHHHHH--HHHHH
Confidence            00       0000000111122222222222222           223333333331    223344444432  24556


Q ss_pred             HHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          370 DLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNR---KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKI  446 (682)
Q Consensus       370 elK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNr---kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el  446 (682)
                      .++.+|...+..+.....+.............++..=|-+.+.   +...++..++.....|..+++....++..+....
T Consensus       253 ~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e  332 (522)
T PF05701_consen  253 SLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE  332 (522)
T ss_pred             HHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666665555422221100000000000001122222333333   3457788888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 005704          447 NEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEE  526 (682)
Q Consensus       447 ~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~e  526 (682)
                      ......+..|+.+|.............-....                  ....+....|.-++..-+.++........+
T Consensus       333 ~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k------------------~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E  394 (522)
T PF05701_consen  333 KEASSEVSSLEAELNKTRSELEAAKAEEEKAK------------------EAMSELPKALQQLSSEAEEAKKEAEEAKEE  394 (522)
T ss_pred             HHHHhHHhhHHHHHHHHHHHHHHHHhhhcchh------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888777654320000000000                  011256666777777778888777777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 005704          527 VRQLKEKIGVLTAELEKTKA  546 (682)
Q Consensus       527 l~~~~~~i~~lr~Ei~~Lk~  546 (682)
                      +......+...+..+..+..
T Consensus       395 ~~~~k~E~e~~ka~i~t~E~  414 (522)
T PF05701_consen  395 VEKAKEEAEQTKAAIKTAEE  414 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77777777777766666655

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.32  E-value=0.031  Score=70.85  Aligned_cols=160  Identities=16%  Similarity=0.194  Sum_probs=79.2

Q ss_pred             hhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHH--------------HHHHH
Q 005704          299 NSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN-E-------IKKLNALLIEKEAA--------------LEDMK  356 (682)
Q Consensus       299 ~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~-~-------~~~L~~ql~~~~~~--------------~~~le  356 (682)
                      ...|+.++..+...|-.|+.+|..|...++........ -       ..+|..-+.-++..              ...|.
T Consensus      1101 ~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~ 1180 (1822)
T KOG4674|consen 1101 EDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLK 1180 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHH
Confidence            34677777778888888999998888887776665331 0       11222222222222              22222


Q ss_pred             HHHhcCCChhhHHHHHHHHHHHHhcccc--CccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005704          357 KELQARPTSKMVDDLRKKVKILQAVGYN--SIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLET  434 (682)
Q Consensus       357 ~~l~~~~~~sDyeelK~EL~~Lk~iEf~--~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~  434 (682)
                      .....+  ..+++++...|...+. .|.  .+.++..+.  - ...-..=.+|.+-|+-|..++...-..+.++..+++.
T Consensus      1181 qq~~~~--~k~i~dL~~sL~~~r~-~~q~~a~s~~e~~~--i-~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~k 1254 (1822)
T KOG4674|consen 1181 QQVASL--NRTIDDLQRSLTAERA-SSQKSAVSDDEHKE--I-LEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEK 1254 (1822)
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHH-hhccchhhhhhhhH--H-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222  1234444444444332 120  010000000  0 0011112356677777766666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704          435 AEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (682)
Q Consensus       435 l~~~~~~l~~el~~~~~l~~kLE~DL~~~~  464 (682)
                      ++.++..+...+.+++..+.....++..+.
T Consensus      1255 l~~el~plq~~l~el~~e~~~~~ael~~l~ 1284 (1822)
T KOG4674|consen 1255 LNFELAPLQNELKELKAELQEKVAELKKLE 1284 (1822)
T ss_pred             HHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666665555555555555555555544

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.32  E-value=0.0028  Score=71.76  Aligned_cols=271  Identities=17%  Similarity=0.202  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (682)
Q Consensus       209 ~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee---~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~  285 (682)
                      .++..+..++.++++|+..++.++......+.+.++.   .....+|+.++..+.......+..|-++|..|+.+|..+.
T Consensus       110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r  189 (546)
T KOG0977|consen  110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR  189 (546)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3444555556666666666665555544444433322   2334677777777776666677777777777777777666


Q ss_pred             hhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 005704          286 DEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTS  365 (682)
Q Consensus       286 s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~  365 (682)
                      .......        .+          ..+++..++.|...|+-....|..+|.++......              -++-
T Consensus       190 ~~ld~Et--------ll----------r~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~r--------------d~t~  237 (546)
T KOG0977|consen  190 KQLDDET--------LL----------RVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARR--------------DTTA  237 (546)
T ss_pred             HHHHHHH--------HH----------HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhh--------------cccc
Confidence            5542110        11          12222222222222222222333333222111100              0000


Q ss_pred             hhHHHHHHHHH-HHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          366 KMVDDLRKKVK-ILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTA  444 (682)
Q Consensus       366 sDyeelK~EL~-~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~  444 (682)
                      ..-+.-+.+|. .|+.|-   .+-+..    .-..-..+|.+.-.|-..+........+.......++..+...+..+.+
T Consensus       238 ~~r~~F~~eL~~Ai~eiR---aqye~~----~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~  310 (546)
T KOG0977|consen  238 DNREYFKNELALAIREIR---AQYEAI----SRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRA  310 (546)
T ss_pred             cchHHHHHHHHHHHHHHH---HHHHHH----HHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhh
Confidence            01111122211 111110   000000    0011234455444444444432222223333444444444444555555


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 005704          445 KINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETE  524 (682)
Q Consensus       445 el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE  524 (682)
                      .+.+++.-|.-|+..|..++......                            .-.....|.--..+.-++|.++..|-
T Consensus       311 klselE~~n~~L~~~I~dL~~ql~e~----------------------------~r~~e~~L~~kd~~i~~mReec~~l~  362 (546)
T KOG0977|consen  311 KLSELESRNSALEKRIEDLEYQLDED----------------------------QRSFEQALNDKDAEIAKMREECQQLS  362 (546)
T ss_pred             hhccccccChhHHHHHHHHHhhhhhh----------------------------hhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            55555555555555554444321100                            00122234444667788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 005704          525 EEVRQLKEKIGVLTAELEKTKA  546 (682)
Q Consensus       525 ~el~~~~~~i~~lr~Ei~~Lk~  546 (682)
                      .|+..+-.....|..||..-+.
T Consensus       363 ~Elq~LlD~ki~Ld~EI~~YRk  384 (546)
T KOG0977|consen  363 VELQKLLDTKISLDAEIAAYRK  384 (546)
T ss_pred             HHHHHhhchHhHHHhHHHHHHH
Confidence            9999999999999999988776

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.28  E-value=0.0039  Score=72.67  Aligned_cols=344  Identities=17%  Similarity=0.273  Sum_probs=196.4

Q ss_pred             hHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005704          135 LESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQL  214 (682)
Q Consensus       135 le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql  214 (682)
                      |...++.|++.++-|+-.-++=+...-+.++.+=.+++++ +....+..+....++++...-.+.        +++++--
T Consensus       229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~Elekmkiqleqlq-EfkSkim~qqa~Lqrel~raR~e~--------keaqe~k  299 (1243)
T KOG0971|consen  229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQ-EFKSKIMEQQADLQRELKRARKEA--------KEAQEAK  299 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence            5566788888888887666665555556666655444442 222222222223333332221111        1111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 005704          215 RQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSD  294 (682)
Q Consensus       215 ~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~  294 (682)
                      +.....+.++...++-.     -+    |-+.+  ....+-|..|+|.++.|+.+|+-.+|-|+.+.+..+++.....+.
T Consensus       300 e~~k~emad~ad~iEma-----Tl----dKEmA--EERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~  368 (1243)
T KOG0971|consen  300 ERYKEEMADTADAIEMA-----TL----DKEMA--EERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSY  368 (1243)
T ss_pred             HHHHHHHHHHHHHHHHH-----Hh----hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchH
Confidence            22222333333332211     11    11111  122467888899999999999999999999999998887655422


Q ss_pred             CcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 005704          295 TLDSNSYLENSLSAKEKIISELNSELHNIETALSNE---REQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDL  371 (682)
Q Consensus       295 ~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~---r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeel  371 (682)
                                ++.+++.+-.+|.+-+.+|..-.+..   +.+...+.......+.++.+....|..++...  .+-+.++
T Consensus       369 ----------qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~a--Es~iadl  436 (1243)
T KOG0971|consen  369 ----------QFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQA--ESTIADL  436 (1243)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence                      24445555666777666665433332   33344455555555666666666666666665  4557888


Q ss_pred             HHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          372 RKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQK  451 (682)
Q Consensus       372 K~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~  451 (682)
                      |.+++.-=    |.   +.  ..+ --...+++  |-+|-+-|+.++.+|..-.+=.++-.+..+.....|..++...+.
T Consensus       437 kEQVDAAl----GA---E~--MV~-qLtdknln--lEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g  504 (1243)
T KOG0971|consen  437 KEQVDAAL----GA---EE--MVE-QLTDKNLN--LEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKG  504 (1243)
T ss_pred             HHHHHHhh----cH---HH--HHH-HHHhhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            88887643    21   11  100 01122332  788999999999999876555555555555556678888888877


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          452 LIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLK  531 (682)
Q Consensus       452 l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~  531 (682)
                      -+..|+..+...+...-                 +              -+..|        -.||.+...|-.++..+.
T Consensus       505 ~~kel~~r~~aaqet~y-----------------D--------------rdqTI--------~KfRelva~Lqdqlqe~~  545 (1243)
T KOG0971|consen  505 ARKELQKRVEAAQETVY-----------------D--------------RDQTI--------KKFRELVAHLQDQLQELT  545 (1243)
T ss_pred             HHHHHHHHHHHHHHHHH-----------------h--------------HHHHH--------HHHHHHHHHHHHHHHHHH
Confidence            77777777665553210                 0              22222        358888888888888777


Q ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHHhhhcccc
Q 005704          532 EKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE  564 (682)
Q Consensus       532 ~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~~  564 (682)
                      .+..+  .+-.+.+-+.++ -+-+.|-.-|..+
T Consensus       546 dq~~S--seees~q~~s~~-~et~dyk~~fa~s  575 (1243)
T KOG0971|consen  546 DQQES--SEEESQQPPSVD-PETFDYKIKFAES  575 (1243)
T ss_pred             hhhhh--hHHHhcCCCCCc-hhhhHHHHHHHHh
Confidence            75544  333455555555 5666776666543

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.26  E-value=0.039  Score=69.74  Aligned_cols=43  Identities=23%  Similarity=0.324  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (682)
Q Consensus       504 siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~  546 (682)
                      .-+.-+..+..+...+..++|+++......+..++.++...+.
T Consensus       607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~  649 (1201)
T PF12128_consen  607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQ  649 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677777888888888888887777777777766665554

>PRK03918 chromosome segregation protein; Provisional

Probab=98.22  E-value=0.037  Score=67.74  Aligned_cols=22  Identities=14%  Similarity=0.267  Sum_probs=12.0

Q ss_pred             HHhhHHHHHHhHHHHHHHhhhh
Q 005704           77 LSLFNSLLKGYQEEVDNLTKRA   98 (682)
Q Consensus        77 l~~~~~LLK~yQ~EID~LTkRs   98 (682)
                      ...++.++|.|...|+.|....
T Consensus       164 ~~~~~~~~~~~~~~~~~l~~~l  185 (880)
T PRK03918        164 YKNLGEVIKEIKRRIERLEKFI  185 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555566666666555544

>PRK01156 chromosome segregation protein; Provisional

Probab=98.21  E-value=0.04  Score=67.67  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND  286 (682)
Q Consensus       251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s  286 (682)
                      .+++.+...++..+.++..+..+...|+..+.....
T Consensus       409 ~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~  444 (895)
T PRK01156        409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELSR  444 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666677777777776665555443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.20  E-value=0.037  Score=66.76  Aligned_cols=166  Identities=16%  Similarity=0.273  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          257 MDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN  336 (682)
Q Consensus       257 ~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~  336 (682)
                      .+.|.+..+.+..|+++.+..+.+..++....                  ...+.+|..+..++..|...+..++..+..
T Consensus       404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~p------------------e~~~~~i~~~~~ei~~L~~~~~~~~~~l~e  465 (1293)
T KOG0996|consen  404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAP------------------EKARIEIQKCQTEIEQLEELLEKEERELDE  465 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCc------------------hhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666667777666666655443332                  222444666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhH
Q 005704          337 EIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEH  416 (682)
Q Consensus       337 ~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~  416 (682)
                      ....++..-.....++..+++++...  ..+..+.+.++++..+=                     |+ +|..+--...+
T Consensus       466 ~~~~l~~~t~~~~~e~~~~ekel~~~--~~~~n~~~~e~~vaese---------------------l~-~L~~~~~~~~~  521 (1293)
T KOG0996|consen  466 ILDSLKQETEGIREEIEKLEKELMPL--LKQVNEARSELDVAESE---------------------LD-ILLSRHETGLK  521 (1293)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---------------------HH-HHHHHHHHHHH
Confidence            66666666666666666666666553  23466666666665520                     11 23444444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704          417 ELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (682)
Q Consensus       417 eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~  464 (682)
                      .+..+...+......+......+..+..++...+..+.+.+.+|.+..
T Consensus       522 ~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~  569 (1293)
T KOG0996|consen  522 KVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLR  569 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence            555555555555555555555566666666666666666666655443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.11  E-value=0.0044  Score=64.06  Aligned_cols=151  Identities=18%  Similarity=0.306  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          201 EILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQ  280 (682)
Q Consensus       201 ~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~e  280 (682)
                      ..++.+......++..++.+++++....+.+...+.+.           ..-+.++..+|+++..|+..++.++..|..+
T Consensus        81 k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~-----------~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~e  149 (237)
T PF00261_consen   81 KVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEV-----------ERKLKVLEQELERAEERAEAAESKIKELEEE  149 (237)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Confidence            33444444445555555555555554444333322222           2346788999999999999999999999999


Q ss_pred             HHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704          281 LQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ  360 (682)
Q Consensus       281 L~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~  360 (682)
                      |..+.....           .++............++..+..|...|...-..    .......+..+...+..|+..+.
T Consensus       150 l~~~~~~lk-----------~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~R----ae~aE~~v~~Le~~id~le~eL~  214 (237)
T PF00261_consen  150 LKSVGNNLK-----------SLEASEEKASEREDEYEEKIRDLEEKLKEAENR----AEFAERRVKKLEKEIDRLEDELE  214 (237)
T ss_dssp             HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-----------HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            988876653           222222222222334444444444444332211    12222333444444555555555


Q ss_pred             cCCChhhHHHHHHHH-HHHH
Q 005704          361 ARPTSKMVDDLRKKV-KILQ  379 (682)
Q Consensus       361 ~~~~~sDyeelK~EL-~~Lk  379 (682)
                      ..  ...|..++.+| .+|.
T Consensus       215 ~~--k~~~~~~~~eld~~l~  232 (237)
T PF00261_consen  215 KE--KEKYKKVQEELDQTLN  232 (237)
T ss_dssp             HH--HHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHHHH
Confidence            43  34588888888 4554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.10  E-value=0.04  Score=65.26  Aligned_cols=201  Identities=18%  Similarity=0.260  Sum_probs=118.7

Q ss_pred             HhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHH
Q 005704          237 EVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISEL  316 (682)
Q Consensus       237 ~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L  316 (682)
                      ..+....+++.....+++-+..+.++....+.+|+.....|+.+.+.+.....           ..-.+...++.+|.+|
T Consensus       244 ~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t-----------~~~k~kt~lel~~kdl  312 (1200)
T KOG0964|consen  244 EDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARET-----------KISKKKTKLELKIKDL  312 (1200)
T ss_pred             HHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhhhhhHHH
Confidence            34444445555556667777777777777778888888888887665543321           1111233445567777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcc
Q 005704          317 NSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATN  396 (682)
Q Consensus       317 ~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~  396 (682)
                      ..++..-...    |...-+....+...+.+...++..++-+-+.+  ..+-+.++..|..|++--      -+ =-+-.
T Consensus       313 q~~i~~n~q~----r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l--~~ee~~~~~rl~~l~~~~------~~-l~~Kq  379 (1200)
T KOG0964|consen  313 QDQITGNEQQ----RNLALHVLQKVKDKIEEKKDELSKIEPKYNSL--VDEEKRLKKRLAKLEQKQ------RD-LLAKQ  379 (1200)
T ss_pred             HHHhhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HhHHHHHHHHHHHHHHHH------HH-HHHhh
Confidence            7776654433    33333344555555555555555555544444  222333444444444310      00 00000


Q ss_pred             hhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704          397 DEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG  463 (682)
Q Consensus       397 ~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~  463 (682)
                      |. ..-. +.--+|.+=+.+++-.+..-+++.....+.++.++..++.++.+.-..+.+|+..+...
T Consensus       380 gr-~sqF-ssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~  444 (1200)
T KOG0964|consen  380 GR-YSQF-SSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINET  444 (1200)
T ss_pred             cc-cccc-CcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence            00 0000 01245677788999999999999999999999999999999999999999988887633

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.05  E-value=0.031  Score=66.36  Aligned_cols=264  Identities=15%  Similarity=0.231  Sum_probs=126.0

Q ss_pred             hhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005704          130 LKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQA  209 (682)
Q Consensus       130 ~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~  209 (682)
                      ..+...+.+++.-+.++++++.++..+.++....+.|++.+.       -.... +.-.+..+...  +. ....+....
T Consensus       677 ~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~-------l~~~~-l~l~~~r~~~~--e~-~~~~~~~~~  745 (1174)
T KOG0933|consen  677 QKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLE-------LKLHE-LALLEKRLEQN--EF-HKLLDDLKE  745 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHhcC--hH-hhHHHHHHH
Confidence            333456677777788888888888888887777666665332       11111 11111111110  00 112333445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 005704          210 LQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG  289 (682)
Q Consensus       210 L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~  289 (682)
                      +.+.+++.+.+|++....+...+..+..+.....+..+.+              ..|+.+|+++...+..++++..... 
T Consensus       746 ~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r--------------e~rlkdl~keik~~k~~~e~~~~~~-  810 (1174)
T KOG0933|consen  746 LLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANR--------------ERRLKDLEKEIKTAKQRAEESSKEL-  810 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh--------------HhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            5566666666666666666655544433322211111111              2344555555555555554432222 


Q ss_pred             cCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH
Q 005704          290 SRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVD  369 (682)
Q Consensus       290 ~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDye  369 (682)
                                       ...+.++..|.-|...++..    ...+..+...+..+++.+...+..+...+.+.  ..|.+
T Consensus       811 -----------------ek~~~e~e~l~lE~e~l~~e----~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~--~~~~~  867 (1174)
T KOG0933|consen  811 -----------------EKRENEYERLQLEHEELEKE----ISSLKQQLEQLEKQISSLKSELGNLEAKVDKV--EKDVK  867 (1174)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HhHHH
Confidence                             11122233333333322222    23333444555555566666666666666665  56677


Q ss_pred             HHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          370 DLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQ  449 (682)
Q Consensus       370 elK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~  449 (682)
                      ..-.+|...+.. +.  +.|.           -+. .++..-.++..+..........+..++..++.+-.....+++.+
T Consensus       868 ~~~~el~~~k~k-~~--~~dt-----------~i~-~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l  932 (1174)
T KOG0933|consen  868 KAQAELKDQKAK-QR--DIDT-----------EIS-GLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKL  932 (1174)
T ss_pred             HHHHHHHHHHHH-HH--hhhH-----------HHh-hhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence            777777766653 11  1110           000 12233334444444444555555555555555555555555554


Q ss_pred             HHHHHHHH
Q 005704          450 QKLIQKLE  457 (682)
Q Consensus       450 ~~l~~kLE  457 (682)
                      .+.+.-+.
T Consensus       933 ~~k~~wi~  940 (1174)
T KOG0933|consen  933 LKKHEWIG  940 (1174)
T ss_pred             HHhccchh
Confidence            44444444

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.96  E-value=0.15  Score=65.22  Aligned_cols=16  Identities=6%  Similarity=0.094  Sum_probs=9.4

Q ss_pred             hhHHHHHhhhhhcChh
Q 005704          586 IESKYKKMYEDDINPF  601 (682)
Q Consensus       586 ~e~~Y~~~YE~~L~Pf  601 (682)
                      |...|..++++.++|-
T Consensus       694 v~~~~~~~~~A~lg~~  709 (1486)
T PRK04863        694 VSLEDAPYFSALYGPA  709 (1486)
T ss_pred             cCcchHHHHHHHHHhh
Confidence            5556666666665553

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.93  E-value=0.074  Score=64.60  Aligned_cols=117  Identities=14%  Similarity=0.153  Sum_probs=65.5

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CC--CCCCCC
Q 005704          402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKD---RK--GNVFDD  476 (682)
Q Consensus       402 ~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~---~~--~~~~~~  476 (682)
                      .++.-+--+-+-+++++...+..+..+  +|..-..+.....+.+.+.+....++++++..+.....   ..  ++.-..
T Consensus       667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~  744 (1317)
T KOG0612|consen  667 ALEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKL  744 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccch
Confidence            345555555566777777777777666  55555666667777777777677777776666553311   00  000000


Q ss_pred             CccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          477 WDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGV  536 (682)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~  536 (682)
                      |..-                .......+..--+++|.+++-..-.-+..+|+.+.+.+..
T Consensus       745 ~~l~----------------r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t  788 (1317)
T KOG0612|consen  745 NELR----------------RSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNT  788 (1317)
T ss_pred             hhhh----------------hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhcc
Confidence            0000                0012444555667777777777777777777755555544

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.87  E-value=0.1  Score=60.28  Aligned_cols=59  Identities=12%  Similarity=0.220  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhcccc
Q 005704          506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE  564 (682)
Q Consensus       506 L~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~~  564 (682)
                      ...........+..+......+.....++.....++...+..=-.-...|+-|+.+...
T Consensus       388 a~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~  446 (522)
T PF05701_consen  388 AEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESS  446 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            33444455555555555666666666666666666666665544446688888776544

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.82  E-value=0.16  Score=60.70  Aligned_cols=112  Identities=23%  Similarity=0.279  Sum_probs=59.4

Q ss_pred             hhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcH--HHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhh
Q 005704           33 LEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPE--EKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQ  110 (682)
Q Consensus        33 l~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~e--ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~  110 (682)
                      |..+.+++-.--.++.+.=+.-+.-|-.|=..-++|.|+--+  +-+... .=.+.|-.|+|.|--+             
T Consensus       179 lAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea-~ra~~yrdeldalre~-------------  244 (1195)
T KOG4643|consen  179 LADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEA-HRADRYRDELDALREQ-------------  244 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHh-------------
Confidence            334444444334445555566677788888888888884322  222221 2245677777766544             


Q ss_pred             hhccCCCCH--HHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhH
Q 005704          111 KLYEAPDPY--PALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ  160 (682)
Q Consensus       111 ~L~eaPDP~--PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~  160 (682)
                        .++|||.  |-|--+.=...++.++...|+-|-++-.=|+.++.+++.|-
T Consensus       245 --aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrars  294 (1195)
T KOG4643|consen  245 --AERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARS  294 (1195)
T ss_pred             --hhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Confidence              4688873  32222211233444555555555555555555555555443

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=0.07  Score=58.51  Aligned_cols=191  Identities=19%  Similarity=0.207  Sum_probs=126.0

Q ss_pred             HHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005704           88 QEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLE  167 (682)
Q Consensus        88 Q~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lk  167 (682)
                      -..+|.+.+-++. |..|.... ..--+|+|.|.+.-=      +..-+.|+..++++++....-.+..+...+.|..|+
T Consensus       190 ~~~ld~wg~~~~t-~~df~f~~-t~dPa~p~~p~~~~p------asse~ee~eel~eq~eeneel~ae~kqh~v~~~ale  261 (521)
T KOG1937|consen  190 RKWLDQWGNSSHT-EKDFNFKL-TDDPALPPKPIFAKP------ASSEEEEVEELTEQNEENEELQAEYKQHLVEYKALE  261 (521)
T ss_pred             hhHHHHHhccCCc-ccccccee-cCCCCCCCccccCCC------ccccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4577888777777 66655443 344577788875431      111233567777777777655666666678888888


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 005704          168 ERNRQLEQQMEEKVKEIVEIKQRGL--AEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE  245 (682)
Q Consensus       168 erl~~lE~~~e~~~~~~~~~~E~el--~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee  245 (682)
                      ++-.+++....+. +..+..+++-+  -..-+....++......++.++.++..+..+-+-.+...-..|.+...-.+.+
T Consensus       262 s~~sq~~e~~sel-E~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e  340 (521)
T KOG1937|consen  262 SKRSQFEEQNSEL-EKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETE  340 (521)
T ss_pred             hhhHHHHHHHHHH-HHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccch
Confidence            8776664433222 12222233322  23445566677888888888888888888888877776666665544332322


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704          246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (682)
Q Consensus       246 ~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~  288 (682)
                      .. ....|..+..||+.+..++..=+..++.|+.+|+..-.+.
T Consensus       341 ~~-e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv  382 (521)
T KOG1937|consen  341 DE-EIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDV  382 (521)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchh
Confidence            22 2688999999999999999988889999999998766554

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.77  E-value=0.13  Score=58.55  Aligned_cols=58  Identities=19%  Similarity=0.207  Sum_probs=44.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (682)
Q Consensus       407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~  464 (682)
                      |.+.+.+...+.+.+.........++..|+.++..+..-+++-+....+|+.+|..-.
T Consensus       348 lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~  405 (546)
T PF07888_consen  348 LKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK  405 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555566777777777666666678888888888888889998999999999986543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.72  E-value=0.12  Score=60.36  Aligned_cols=33  Identities=15%  Similarity=0.126  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704          433 ETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (682)
Q Consensus       433 ~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~  465 (682)
                      +....++..+...++.+..-|..|...|..+..
T Consensus       282 E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~  314 (617)
T PF15070_consen  282 EMAHQELQEAQEHLEALSQQNQQLQAQLSLMAL  314 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence            445566666677777777788888888876553

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.71  E-value=0.22  Score=59.43  Aligned_cols=257  Identities=19%  Similarity=0.240  Sum_probs=133.9

Q ss_pred             HHhhhhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhc---CCcHHH------HHhhHHHHHH----hHHH
Q 005704           24 ISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKK---ASPEEK------LSLFNSLLKG----YQEE   90 (682)
Q Consensus        24 a~~~W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk---~~~eek------l~~~~~LLK~----yQ~E   90 (682)
                      ++-.|..+-++.  ++|+.+-+.|.+.+.++-+-| .+|+-|-+--+   ++.+++      +.-+.+|+|-    |-.=
T Consensus        50 ~llLg~avqcp~--kelfi~riq~ldlete~a~~~-~iaevtd~~~~vleld~~er~~~~q~~~hir~llk~r~~~~k~~  126 (1195)
T KOG4643|consen   50 QLLLGSAVQCPT--KELFIQRIQILDLETEMAQMR-TIAEVTDEECQVLELDNEERAQKIQILEHIRLLLKDRKKKWKSV  126 (1195)
T ss_pred             HHHHHhhhcCCc--HHHHHHHHHhhhhHHHHHHHH-HHHHhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            355788888774  789999999999999998888 77777654332   333333      3344556553    4445


Q ss_pred             HHHHhhhhhhh-HH--HHHHHhhhhccCCCC-----HHHHHH---HHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhh
Q 005704           91 VDNLTKRAKFG-EN--AFLNIYQKLYEAPDP-----YPALAS---IAEQDLKLSELESENRKMKIELEEYRTEATHLKNQ  159 (682)
Q Consensus        91 ID~LTkRsK~a-E~--aFl~~Y~~L~eaPDP-----~PlLe~---s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq  159 (682)
                      ||.+--.+-.. |.  --.++-+.+.+.||-     .|..-.   .......+.+++.-+..|+.++.+   ++.-+..-
T Consensus       127 id~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEE---K~enll~l  203 (1195)
T KOG4643|consen  127 IDDLQEASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEE---KFENLLRL  203 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            55543322211 11  123444555555543     222111   011111222344444444444332   22111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHhhhHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 005704          160 QSTIRRLEERNRQLEQQMEEKVKEIV--EIKQRGLAEENQKT---LEILQEREQA---LQDQLRQAKDSVATMQKLHELA  231 (682)
Q Consensus       160 ~~~~~~Lkerl~~lE~~~e~~~~~~~--~~~E~el~~~~eek---~~~~~ere~~---L~~ql~~ae~~l~eL~~~le~~  231 (682)
                      ..+++-|+.++..+.++..+-+..+=  ..--.++.+..+..   -..+.++..+   +.+++++++..+.+|....+-.
T Consensus       204 r~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeML  283 (1195)
T KOG4643|consen  204 RNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEML  283 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            23555566666666666555544311  11111222211111   1123444443   4678999999999999998888


Q ss_pred             HHHHHHhhhcchHH-----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704          232 QSQLFEVRAQSDEE-----RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND  286 (682)
Q Consensus       232 Q~eL~~l~~k~~ee-----~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s  286 (682)
                      ..+|..++++.+..     .-.....+.-+..+...-+.+.++|.-||-.|.-+-+....
T Consensus       284 eeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~  343 (1195)
T KOG4643|consen  284 EEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDG  343 (1195)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            88898888876431     11112333444444444566677777777766655544443

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.70  E-value=0.029  Score=65.05  Aligned_cols=177  Identities=12%  Similarity=0.182  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNERE  332 (682)
Q Consensus       253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~  332 (682)
                      ++.+..+++.....+..++.+.+.|+.+|....+...           ..+..+...+..+..++.++..++..+.-.+.
T Consensus       215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~-----------~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~  283 (562)
T PHA02562        215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE-----------DPSAALNKLNTAAAKIKSKIEQFQKVIKMYEK  283 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4455555555555566666666666666655553321           22222333444444444444444444332211


Q ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHhccccCccchhhhhhcchhh
Q 005704          333 ------------QHMNEIKKLNALLIEKEAALEDMKKELQAR-PTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEE  399 (682)
Q Consensus       333 ------------~~~~~~~~L~~ql~~~~~~~~~le~~l~~~-~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~  399 (682)
                                  .....+..|.+++..++..+..++..+..+ ....+|+++..++.-++..-              ...
T Consensus       284 ~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i--------------~~~  349 (562)
T PHA02562        284 GGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKI--------------STN  349 (562)
T ss_pred             CCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence                        001222333333333333333333332211 00123555555555554320              001


Q ss_pred             hchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQK  455 (682)
Q Consensus       400 ~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~k  455 (682)
                      ...+++ +..+++.++.++..|.....++..++..+..++..+..++.+.......
T Consensus       350 ~~~i~~-~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~  404 (562)
T PHA02562        350 KQSLIT-LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH  404 (562)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            123444 6666777777777777777777667666666666666666555554443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.69  E-value=0.039  Score=66.44  Aligned_cols=143  Identities=17%  Similarity=0.292  Sum_probs=80.2

Q ss_pred             HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHH
Q 005704          177 MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLL  256 (682)
Q Consensus       177 ~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l  256 (682)
                      ..+..=..|..+++.+... .+.....+++...++++++....++.+++..+...+.++..+..    +..+...|++.+
T Consensus       268 k~k~~W~~V~~~~~ql~~~-~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~----e~~~~d~Ei~~~  342 (1074)
T KOG0250|consen  268 KAKMAWAWVNEVERQLNNQ-EEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKD----EVDAQDEEIEEA  342 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH----hhhhhhHHHHHH
Confidence            3344445666777777664 44556678888888888888888888888777777777766543    223334444444


Q ss_pred             HHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHH
Q 005704          257 MDEVERA--------------QTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHN  322 (682)
Q Consensus       257 ~~DLEra--------------~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~  322 (682)
                      ..++...              ...+..+..++..|+.+++.......          ..+..++...+.++..|..++..
T Consensus       343 r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~----------~~~~~~~~e~e~k~~~L~~evek  412 (1074)
T KOG0250|consen  343 RKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN----------NELGSELEERENKLEQLKKEVEK  412 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhhhHHHHHHHHHHHHHHHHH
Confidence            4444443              23334444444455555544443331          12333344444455666666665


Q ss_pred             HHHHHHHHHHHH
Q 005704          323 IETALSNEREQH  334 (682)
Q Consensus       323 Le~~L~~~r~~~  334 (682)
                      ++..+..++...
T Consensus       413 ~e~~~~~L~~e~  424 (1074)
T KOG0250|consen  413 LEEQINSLREEL  424 (1074)
T ss_pred             HHHHHHHHHHHH
Confidence            555555554443

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.69  E-value=2.4e-05  Score=93.29  Aligned_cols=201  Identities=18%  Similarity=0.202  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005704          252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNER  331 (682)
Q Consensus       252 Ele~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r  331 (682)
                      +.+....+|...+....+.+..+..|..+|....+.....        ..+ .+...   .|..|+.+|.++.+.+..+|
T Consensus       210 e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~--------k~l-~~ql~---~i~~LE~en~~l~~Elk~Lr  277 (722)
T PF05557_consen  210 EAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEIN--------KEL-KEQLA---HIRELEKENRRLREELKHLR  277 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHH--------HHH-HHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            3333444455555555556666666666665544433111        111 11222   37788888888888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHhccccCcc-chh-hhhhcchhhhchHHHHHH
Q 005704          332 EQHMNEIKKLNALLIEKEAALEDMKKELQARPT-SKMVDDLRKKVKILQAVGYNSIE-AED-WEVATNDEEMSKMESLLL  408 (682)
Q Consensus       332 ~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~-~sDyeelK~EL~~Lk~iEf~~~d-~~~-~~~a~~~~~~~~LE~lLl  408 (682)
                      ..+.+ +.-|+++...+...+..++.....+.. .-++..|..++..-.++.-..+. -+. +..+..-..-..=...|+
T Consensus       278 ~~~~n-~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~  356 (722)
T PF05557_consen  278 QSQEN-VELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLT  356 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            76654 334455555544444444433222210 11233334443333322111000 000 000000000011145688


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704          409 DKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (682)
Q Consensus       409 ~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~  465 (682)
                      +++..++.++..++..+.++..++..+...+..+...+......+.+||..+.-+..
T Consensus       357 ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~k  413 (722)
T PF05557_consen  357 EKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATK  413 (722)
T ss_dssp             ---------------------------------------------------------
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887766553

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.69  E-value=0.2  Score=58.27  Aligned_cols=84  Identities=12%  Similarity=0.180  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS---DEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRS  279 (682)
Q Consensus       203 ~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~---~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~  279 (682)
                      ++.+...++-++..++..+..++..+..+..+|..+.++.   .++..++..+|-|+..||-.-+..+.+++.+..++-+
T Consensus       111 LQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~  190 (1265)
T KOG0976|consen  111 LQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLA  190 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHH
Confidence            3333333333344444444444444444444444444433   3345677888989988888877777666666555555


Q ss_pred             HHHhhhh
Q 005704          280 QLQSAND  286 (682)
Q Consensus       280 eL~~a~s  286 (682)
                      +.+..+.
T Consensus       191 e~~~en~  197 (1265)
T KOG0976|consen  191 EANREKK  197 (1265)
T ss_pred             HHHHHHH
Confidence            5444443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.66  E-value=0.046  Score=56.53  Aligned_cols=57  Identities=14%  Similarity=0.270  Sum_probs=33.8

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG  463 (682)
Q Consensus       407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~  463 (682)
                      +-.+-+.|...|..........+..+..|+..+..+..++...+..+..+..+|...
T Consensus       174 ~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~  230 (237)
T PF00261_consen  174 YEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT  230 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555556666666666666666666666666666666666433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.65  E-value=0.13  Score=58.55  Aligned_cols=45  Identities=27%  Similarity=0.369  Sum_probs=25.3

Q ss_pred             hHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHH
Q 005704          135 LESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVK  182 (682)
Q Consensus       135 le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~  182 (682)
                      ++.|+..++..+++-.++.+++   ..+|++|++.+.+|..+.++...
T Consensus        90 ye~El~~ar~~l~e~~~~ra~~---e~ei~kl~~e~~elr~~~~~~~k  134 (546)
T KOG0977|consen   90 YEAELATARKLLDETARERAKL---EIEITKLREELKELRKKLEKAEK  134 (546)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHH
Confidence            4445555555555555555543   34666666666666666654443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.65  E-value=0.23  Score=57.95  Aligned_cols=30  Identities=13%  Similarity=0.163  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 005704          217 AKDSVATMQKLHELAQSQLFEVRAQSDEER  246 (682)
Q Consensus       217 ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~  246 (682)
                      -...+..|+..+...+..|.+.+..++...
T Consensus       138 nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~  167 (569)
T PRK04778        138 NREEVEQLKDLYRELRKSLLANRFSFGPAL  167 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccccchH
Confidence            344555555555555556655555555443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.64  E-value=1.1e-05  Score=97.38  Aligned_cols=296  Identities=19%  Similarity=0.272  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH----------HhhHHHHHHHHHHHHHH--
Q 005704          196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEER----------VAKQSEVNLLMDEVERA--  263 (682)
Q Consensus       196 ~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~----------~a~~aEle~l~~DLEra--  263 (682)
                      .+...+.++....+++.++.+.++.+.+|.......+.++.++....++..          .....+|+.+...|+..  
T Consensus       178 ~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr  257 (859)
T PF01576_consen  178 AEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETR  257 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhh
Confidence            344444455555555555666666666666666655555555555544331          11123344444444332  


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          264 -----QTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEI  338 (682)
Q Consensus       264 -----~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~  338 (682)
                           ...+..++.+++.|++++..-..+.....    ...+.+..++...   ...++.+.......+...+..+...+
T Consensus       258 ~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~----~qlsk~~~El~~~---k~K~e~e~~~~~EelEeaKKkL~~~L  330 (859)
T PF01576_consen  258 AKQALEKQLRQLEHELEQLREQLEEEEEAKSELE----RQLSKLNAELEQW---KKKYEEEAEQRTEELEEAKKKLERKL  330 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHH----HHHHHHhhHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence                 33445556666666666543222111000    0011222222222   33444555544555677788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHH
Q 005704          339 KKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHEL  418 (682)
Q Consensus       339 ~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eL  418 (682)
                      ..+..++......+..|++.+..+  ..+++++..+|+-.+..    ..              .    |-.|-+++...+
T Consensus       331 ~el~e~le~~~~~~~~LeK~k~rL--~~EleDl~~eLe~~~~~----~~--------------~----LeKKqr~fDk~l  386 (859)
T PF01576_consen  331 QELQEQLEEANAKVSSLEKTKKRL--QGELEDLTSELEKAQAA----AA--------------E----LEKKQRKFDKQL  386 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----HH--------------H----HHHHHHhHHHHH
Confidence            999999999999999999998888  57888888777766632    10              0    122333333333


Q ss_pred             HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccc
Q 005704          419 TQLKVKLSEKTSLLE--------------TAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGG  484 (682)
Q Consensus       419 t~LR~~~~~l~~~l~--------------~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~  484 (682)
                      +..+.....+...++              .+...+..+...+..++..+..|..+|..+.+..+       +++      
T Consensus       387 ~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~-------~~~------  453 (859)
T PF01576_consen  387 AEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLD-------DAG------  453 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhh-------hhc------
Confidence            333333333333333              33333333333333333334444333333321110       000      


Q ss_pred             cccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704          485 TELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKAD  547 (682)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~D  547 (682)
                                  ..........--+..+++.++..+.|++..+......+.-+..++..++++
T Consensus       454 ------------k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e  504 (859)
T PF01576_consen  454 ------------KSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE  504 (859)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             ------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        001134444555666777777788888888877777777777777777774

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK11281 hypothetical protein; Provisional

Probab=97.55  E-value=0.15  Score=63.25  Aligned_cols=53  Identities=17%  Similarity=0.138  Sum_probs=37.6

Q ss_pred             chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI  453 (682)
Q Consensus       401 ~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~  453 (682)
                      .++=+-+++.|++|..+|...-...+.+.++.......+..+.+.....++-+
T Consensus       277 ~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi  329 (1113)
T PRK11281        277 NPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI  329 (1113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34545577889999888888888877777777777777777766655544444

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.53  E-value=0.24  Score=60.01  Aligned_cols=15  Identities=20%  Similarity=0.264  Sum_probs=11.1

Q ss_pred             hHHHHHhhhhhcChh
Q 005704          587 ESKYKKMYEDDINPF  601 (682)
Q Consensus       587 e~~Y~~~YE~~L~Pf  601 (682)
                      +++|..++|..|+-.
T Consensus       507 ~~KWa~aIE~~L~n~  521 (1074)
T KOG0250|consen  507 EPKWALAIERCLGNL  521 (1074)
T ss_pred             CcHHHHHHHHHHHHh
Confidence            459999999866543

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.52  E-value=0.17  Score=53.09  Aligned_cols=47  Identities=19%  Similarity=0.241  Sum_probs=39.0

Q ss_pred             chHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704          242 SDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (682)
Q Consensus       242 ~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~  288 (682)
                      |.......-+|-.||...||...+--.-||.+++..|..|+.|-.+.
T Consensus        61 y~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~  107 (305)
T PF14915_consen   61 YNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDH  107 (305)
T ss_pred             HhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34444445578889999999999999999999999999999987665

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.45  E-value=0.5  Score=56.71  Aligned_cols=99  Identities=21%  Similarity=0.234  Sum_probs=70.4

Q ss_pred             hcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCC-----cHHHHHhhHHHHHHhHHHHHHHhhhhhhhHH
Q 005704           29 KDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKAS-----PEEKLSLFNSLLKGYQEEVDNLTKRAKFGEN  103 (682)
Q Consensus        29 ~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~-----~eekl~~~~~LLK~yQ~EID~LTkRsK~aE~  103 (682)
                      ...+|..++..|+..-..+...-..-...|+.|+.+-++..+..     +.+.......+++.|+..+.+||.--..-+.
T Consensus       313 ~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~  392 (1174)
T KOG0933|consen  313 EETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNED  392 (1174)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence            33456666777777777777777777788889998888888843     3456677889999999999999987666666


Q ss_pred             HHHHHhhhhccCCCCHHHHHHHHH
Q 005704          104 AFLNIYQKLYEAPDPYPALASIAE  127 (682)
Q Consensus       104 aFl~~Y~~L~eaPDP~PlLe~s~~  127 (682)
                      +=-.+-..|.+|.+...-+.....
T Consensus       393 ~e~~l~~ql~~aK~~~~~~~t~~k  416 (1174)
T KOG0933|consen  393 EEKTLEDQLRDAKITLSEASTEIK  416 (1174)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHH
Confidence            555555666666665554444333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.44  E-value=0.072  Score=63.14  Aligned_cols=105  Identities=25%  Similarity=0.334  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhh--------------HHHHHHHHHHHHHHHH
Q 005704          260 VERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAK--------------EKIISELNSELHNIET  325 (682)
Q Consensus       260 LEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~k--------------e~ei~~L~~e~~~Le~  325 (682)
                      -|.-++|..+||.|...||.+|........           .+|.++..+              =..++-|.+.+.+|+.
T Consensus       540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~-----------~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~  608 (697)
T PF09726_consen  540 AESCRQRRRQLESELKKLRRELKQKEEQIR-----------ELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLEN  608 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            344577888888888888888876554432           222222111              0112344555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 005704          326 ALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV  381 (682)
Q Consensus       326 ~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~i  381 (682)
                      +|..+-+-.    -+|=..|.+.++++.-++..+.+.  ..++.+||..|.-|-+|
T Consensus       609 sLsaEtriK----ldLfsaLg~akrq~ei~~~~~~~~--d~ei~~lk~ki~~~~av  658 (697)
T PF09726_consen  609 SLSAETRIK----LDLFSALGDAKRQLEIAQGQLRKK--DKEIEELKAKIAQLLAV  658 (697)
T ss_pred             hhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhc
Confidence            555443322    223334455555666666666665  46799999988887776

; GO: 0016021 integral to membrane

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.41  E-value=0.25  Score=57.23  Aligned_cols=108  Identities=9%  Similarity=0.178  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704          208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE  287 (682)
Q Consensus       208 ~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~  287 (682)
                      ..+++++..+..+...++..++..+.+|.++..           +++.+...|..++..+..++..++.+...+......
T Consensus       216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~-----------~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~  284 (562)
T PHA02562        216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVM-----------DIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKG  284 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            344445555555555555555555555555542           223333344455555555666666666655554321


Q ss_pred             hccCC-CCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005704          288 AGSRN-SDTLDSNSYLENSLSAKEKIISELNSELHNIETALSN  329 (682)
Q Consensus       288 ~~~~~-~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~  329 (682)
                      ..=+. ...++.  . ...+......+..|+++...+...+..
T Consensus       285 ~~Cp~C~~~~~~--~-~~~~~~l~d~i~~l~~~l~~l~~~i~~  324 (562)
T PHA02562        285 GVCPTCTQQISE--G-PDRITKIKDKLKELQHSLEKLDTAIDE  324 (562)
T ss_pred             CCCCCCCCcCCC--c-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11000 001111  1 333444444566666666655555443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.29  E-value=0.82  Score=55.83  Aligned_cols=56  Identities=27%  Similarity=0.259  Sum_probs=40.2

Q ss_pred             HhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcC--CcHHHHHhhHHHHHHhHHHHH
Q 005704           37 KSLLDELGLKIAENQENSQKNRRKLAESTRDFKKA--SPEEKLSLFNSLLKGYQEEVD   92 (682)
Q Consensus        37 q~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~--~~eekl~~~~~LLK~yQ~EID   92 (682)
                      |..+-..-..|+..|......+..|-+....|.-.  +--+|...++.-+|.++.+++
T Consensus       326 q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~k  383 (1293)
T KOG0996|consen  326 QYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELK  383 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            44455567788888999888898888888888733  334667777777776666554

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.26  E-value=0.3  Score=58.08  Aligned_cols=59  Identities=20%  Similarity=0.257  Sum_probs=29.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (682)
Q Consensus       407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~  465 (682)
                      |.+||..|++.|..-..-..+|=..|-....++.-+...+-..+..|..|-..|..+-.
T Consensus       599 mqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a  657 (697)
T PF09726_consen  599 MQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA  657 (697)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45555556555554444444444455555555555555555555555555554444443

; GO: 0016021 integral to membrane

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.25  E-value=0.64  Score=55.04  Aligned_cols=57  Identities=19%  Similarity=0.260  Sum_probs=52.6

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704          409 DKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (682)
Q Consensus       409 ~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~  465 (682)
                      .=-.||..+|.........|...++..+.++......+.++...|..|-..|..+..
T Consensus       265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~  321 (717)
T PF09730_consen  265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK  321 (717)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344789999999999999999999999999999999999999999999999988875

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.24  E-value=0.96  Score=55.48  Aligned_cols=39  Identities=18%  Similarity=0.198  Sum_probs=24.3

Q ss_pred             HHHHhHHhhcCCcHHHHHhhH---HHHHHhHHHHHHHhhhhhhh
Q 005704           61 LAESTRDFKKASPEEKLSLFN---SLLKGYQEEVDNLTKRAKFG  101 (682)
Q Consensus        61 La~~Tk~Fkk~~~eekl~~~~---~LLK~yQ~EID~LTkRsK~a  101 (682)
                      |...+++-+++.  ++...++   .+.|-++..|-.|+.+-...
T Consensus       443 l~~~~~~~~~~~--~~~~~~~~~~~~~keL~e~i~~lk~~~~el  484 (1317)
T KOG0612|consen  443 LVNEMQEKEKLD--EKCQAVAELEEMDKELEETIEKLKSEESEL  484 (1317)
T ss_pred             hhhHHHHhhhHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555433  3444444   67888998888887765544

>PRK01156 chromosome segregation protein; Provisional

Probab=97.20  E-value=1.1  Score=55.32  Aligned_cols=39  Identities=21%  Similarity=0.258  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704          506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT  544 (682)
Q Consensus       506 L~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~L  544 (682)
                      +.-+..+++.++..+.+++.++.....++..++.+++.+
T Consensus       683 ~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~  721 (895)
T PRK01156        683 LKKSRKALDDAKANRARLESTIEILRTRINELSDRINDI  721 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            344444555555555555555555555444444444433

>PRK11637 AmiB activator; Provisional

Probab=97.14  E-value=0.54  Score=52.94  Aligned_cols=34  Identities=12%  Similarity=0.230  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (682)
Q Consensus       252 Ele~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~  285 (682)
                      +|..+..+++..+.++..++.+++.++..|....
T Consensus        97 ~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl  130 (428)
T PRK11637         97 TLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL  130 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555555555555554433

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.12  E-value=0.0035  Score=75.06  Aligned_cols=105  Identities=19%  Similarity=0.245  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHH
Q 005704          429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKV  508 (682)
Q Consensus       429 ~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~I  508 (682)
                      ..++..++.++..++.++..++..+..||..|...+-.+.     ++      +..+.+..-       .+++.....-|
T Consensus       502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~-----~~------~~~trVL~l-------r~NP~~~~~~~  563 (722)
T PF05557_consen  502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGE-----FN------PSKTRVLHL-------RDNPTSKAEQI  563 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-------B------TTTEEEEEE-------SS-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----cC------CCCceeeee-------CCCcHHHHHHH
Confidence            4567778888888888888888889999988886431000     00      000111110       11244555667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhhhhhHhh
Q 005704          509 ICNQRDRFRARLRETEEEVRQ-------------------LKEKIGVLTAELEKTKADNVQL  551 (682)
Q Consensus       509 vt~QRDRfr~r~~ELE~el~~-------------------~~~~i~~lr~Ei~~Lk~DN~kL  551 (682)
                      -.+..+.++..|..|...++.                   ....+..|+.++.++..-|..|
T Consensus       564 k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RL  625 (722)
T PF05557_consen  564 KKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRL  625 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            788888999999888888832                   2345678888888888744433

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.07  E-value=0.62  Score=50.54  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=31.2

Q ss_pred             HHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCC
Q 005704           82 SLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAP  116 (682)
Q Consensus        82 ~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaP  116 (682)
                      |+|-.||-=+--|.++=..+-..|=++=.....-|
T Consensus        68 P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~n  102 (325)
T PF08317_consen   68 PMLELYQFSCRELKKYISEGRQIFEEIEEETYESN  102 (325)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            89999999999999999999999988888887666

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.06  E-value=1  Score=52.72  Aligned_cols=225  Identities=17%  Similarity=0.173  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          202 ILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQL  281 (682)
Q Consensus       202 ~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL  281 (682)
                      .+....-.+++++.+.+.+|..|+.+.-..+.++..++.    ..++.++.+-....+||..+.|+..++.++-.=+.++
T Consensus        89 iyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~----ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eI  164 (1265)
T KOG0976|consen   89 IYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQD----TIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDI  164 (1265)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Confidence            344444555666666666666666666555444433321    2223334444444555666666666666555555554


Q ss_pred             HhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          282 QSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHM--NEIKKLNALLIEKEAALEDMKKEL  359 (682)
Q Consensus       282 ~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~--~~~~~L~~ql~~~~~~~~~le~~l  359 (682)
                      -....+.....    ....+++.++..+   ..+-..++..++..+...+....  +++..+-.+.....+.+-+-...|
T Consensus       165 f~~~~~L~nk~----~~lt~~~~q~~tk---l~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QL  237 (1265)
T KOG0976|consen  165 FMIGEDLHDKN----EELNEFNMEFQTK---LAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQL  237 (1265)
T ss_pred             HHHHHHHhhhh----hHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433332211    1111333333333   22233333333333333333211  122222222222222222222222


Q ss_pred             hcCCChhh-HHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          360 QARPTSKM-VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGK  438 (682)
Q Consensus       360 ~~~~~~sD-yeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~  438 (682)
                      ..+   .+ ..-++.-...++..    +  ++- .+ .+....--+..|..+|-.|..|+.+..-....++..++.++..
T Consensus       238 ss~---~q~ltp~rk~~s~i~E~----d--~~l-q~-sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt  306 (1265)
T KOG0976|consen  238 SSQ---KQTLTPLRKTCSMIEEQ----D--MDL-QA-SAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQT  306 (1265)
T ss_pred             HHh---HhhhhhHhhhhHHHHHH----H--HHH-HH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            222   12 23334444444321    0  000 00 0001111144577788888888888877777777777777766


Q ss_pred             HHHHHHHHHH
Q 005704          439 IAELTAKINE  448 (682)
Q Consensus       439 ~~~l~~el~~  448 (682)
                      .+..-...++
T Consensus       307 ~t~a~gdseq  316 (1265)
T KOG0976|consen  307 RTRADGDSEQ  316 (1265)
T ss_pred             HHHhhccHHH
Confidence            6665555443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=1.1  Score=52.52  Aligned_cols=67  Identities=27%  Similarity=0.316  Sum_probs=40.3

Q ss_pred             hhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh-hHHHHH
Q 005704          300 SYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSK-MVDDLR  372 (682)
Q Consensus       300 s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~s-DyeelK  372 (682)
                      +.|++.+..++..+..++..+..++    .+.++.-+++.-++.|+.+++..+......++.+  +. +|+-+|
T Consensus       531 s~L~aa~~~ke~irq~ikdqldels----kE~esk~~eidi~n~qlkelk~~~~~q~lake~~--yk~e~d~~k  598 (1118)
T KOG1029|consen  531 SELEAARRKKELIRQAIKDQLDELS----KETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL--YKNERDKLK  598 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            4566666666666666666655443    3344455567777777777777666665555554  33 566655

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.04  E-value=1.4  Score=53.69  Aligned_cols=117  Identities=13%  Similarity=0.120  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccccccccccc
Q 005704          414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADK  493 (682)
Q Consensus       414 L~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (682)
                      ..+.-..+..+.++....|+..+......+.-++.....+..-.++|..+++...                         
T Consensus      1554 a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~------------------------- 1608 (1758)
T KOG0994|consen 1554 ARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETA------------------------- 1608 (1758)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------------------------
Confidence            3444455555556666666666666666666677777777777777777776432                         


Q ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhcc
Q 005704          494 KHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYN  562 (682)
Q Consensus       494 ~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~  562 (682)
                             .....+.-.+.|...|..++.+|..+..+...........+.+.+..-+.-=++.+-||+|.
T Consensus      1609 -------~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~ 1670 (1758)
T KOG0994|consen 1609 -------AAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYY 1670 (1758)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   23334455567777777788887777766555544444444444333222223444555554

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.03  E-value=1  Score=52.00  Aligned_cols=121  Identities=15%  Similarity=0.191  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          162 TIRRLEERNRQLEQQMEEKVKE-------IVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQ  234 (682)
Q Consensus       162 ~~~~Lkerl~~lE~~~e~~~~~-------~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~e  234 (682)
                      +|+.|..|+...|...++.++.       .+... ..+++.+...-.-|+-.++.|-++|.+-+..+.-+.-.-.....+
T Consensus       613 Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQI-E~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqE  691 (961)
T KOG4673|consen  613 EIEDLQRRLQAAERRCEELIQQVPETTRPLLRQI-EALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQE  691 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHH
Confidence            5555666655555555555543       12222 134556666667787778888888876655554433222222234


Q ss_pred             HHHhhhcchHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704          235 LFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS  283 (682)
Q Consensus       235 L~~l~~k~~ee---~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~  283 (682)
                      |..+++.....   .+-..+|-.-+..-+|.++.|+.+...++-.+.+++..
T Consensus       692 lL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~  743 (961)
T KOG4673|consen  692 LLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADT  743 (961)
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            56666654433   22235677778888888888888888888777777653

>PF13514 AAA_27: AAA domain

Probab=97.01  E-value=1.8  Score=54.63  Aligned_cols=51  Identities=14%  Similarity=0.051  Sum_probs=33.7

Q ss_pred             HhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhh
Q 005704           78 SLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKL  132 (682)
Q Consensus        78 ~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~  132 (682)
                      ......+..-+..+..+.........++-.+...+. .|+| |  ....++..+.
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g-~p~~-p--~~~~~Wl~~~  610 (1111)
T PF13514_consen  560 EEARARLARAQARLAAAEAALAALEAAWAALWAAAG-LPLS-P--AEMRDWLARR  610 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCC-h--HHHHHHHHHH
Confidence            334444555666777777777777888888888888 7765 3  4555555443

>PRK11637 AmiB activator; Provisional

Probab=97.00  E-value=0.81  Score=51.50  Aligned_cols=14  Identities=21%  Similarity=0.123  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHH
Q 005704          643 YTILLHVLVFTCLY  656 (682)
Q Consensus       643 Y~~~LH~lv~~~ly  656 (682)
                      |+|+-|+--|+++|
T Consensus       362 ~vii~hg~g~~t~Y  375 (428)
T PRK11637        362 VVVVEHGKGDMSLY  375 (428)
T ss_pred             EEEEEeCCCcEEEc
Confidence            34566776677777

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.92  E-value=1.3  Score=51.52  Aligned_cols=11  Identities=27%  Similarity=0.510  Sum_probs=8.0

Q ss_pred             cCCCCHHHHHH
Q 005704          114 EAPDPYPALAS  124 (682)
Q Consensus       114 eaPDP~PlLe~  124 (682)
                      ..|.|.|.+..
T Consensus        36 ~s~g~sP~~~q   46 (716)
T KOG4593|consen   36 SSPGSSPNLYQ   46 (716)
T ss_pred             cCCCCCccccC
Confidence            47888887744

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.89  E-value=0.00024  Score=84.75  Aligned_cols=64  Identities=14%  Similarity=0.242  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 005704          312 IISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA  380 (682)
Q Consensus       312 ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~  380 (682)
                      .+.+|+.||..|........   ...+..|...+.........|+......  ...+.++..+++-|+.
T Consensus       460 rl~rLe~ENk~Lk~~~e~~~---~e~~~~L~~~Leda~~~~~~Le~~~~~~--~~~~~~lq~qle~lq~  523 (713)
T PF05622_consen  460 RLLRLEHENKRLKEKQEESE---EEKLEELQSQLEDANRRKEKLEEENREA--NEKILELQSQLEELQK  523 (713)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            46778888888865533221   2234556666777666666666665544  2345566666665553

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=96.87  E-value=2.2  Score=53.35  Aligned_cols=22  Identities=9%  Similarity=0.152  Sum_probs=12.6

Q ss_pred             hcchhhHHHHHHHHHHHHHHHH
Q 005704          631 LGNKYARTFAFFYTILLHVLVF  652 (682)
Q Consensus       631 l~nr~~R~~f~~Y~~~LH~lv~  652 (682)
                      ..+-..|.+|++-|++|-++++
T Consensus       627 ~~~~lgr~~~i~~~~~l~~~~~  648 (1109)
T PRK10929        627 FSGTLGRLCFILLCGALSLVTL  648 (1109)
T ss_pred             hhccHHHHHHHHHHHHHHHHHH
Confidence            3445566677776666554443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.87  E-value=0.7  Score=47.70  Aligned_cols=131  Identities=22%  Similarity=0.311  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704          208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE  287 (682)
Q Consensus       208 ~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~  287 (682)
                      .++..++...+..+.+++...+..+..+..         .....|+.-|..++.-|+.|...|+.++..|..++.     
T Consensus        55 e~le~qv~~~e~ei~~~r~r~~~~e~kl~~---------v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~-----  120 (239)
T COG1579          55 EDLENQVSQLESEIQEIRERIKRAEEKLSA---------VKDERELRALNIEIQIAKERINSLEDELAELMEEIE-----  120 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            344555555566666666666555544411         223456677777777777777777777776665543     


Q ss_pred             hccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 005704          288 AGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM  367 (682)
Q Consensus       288 ~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sD  367 (682)
                                          .++.++..+.....+++..+...+......+..+.++..........|..++..- -.+.
T Consensus       121 --------------------~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~e-ll~~  179 (239)
T COG1579         121 --------------------KLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPE-LLSE  179 (239)
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHH
Confidence                                2355577788888888888888888888888888888877777777777766531 1345


Q ss_pred             HHHHHH
Q 005704          368 VDDLRK  373 (682)
Q Consensus       368 yeelK~  373 (682)
                      |+-|.+
T Consensus       180 yeri~~  185 (239)
T COG1579         180 YERIRK  185 (239)
T ss_pred             HHHHHh
Confidence            666543

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.87  E-value=0.34  Score=48.59  Aligned_cols=91  Identities=16%  Similarity=0.214  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          195 ENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREK  274 (682)
Q Consensus       195 ~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~  274 (682)
                      .+.+.++.|.++.+..+.+...+++.+++....+-.++.++..+..-..   ....+|.+.+...|+.++.++.+.++++
T Consensus        65 ~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~---dknL~eReeL~~kL~~~~~~l~~~~~ki  141 (194)
T PF15619_consen   65 RHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSE---DKNLAEREELQRKLSQLEQKLQEKEKKI  141 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666777777777777777777777766666666655554432111   1124667778888888888888888888


Q ss_pred             HHHHHHHHhhhhhh
Q 005704          275 DLLRSQLQSANDEA  288 (682)
Q Consensus       275 E~Lr~eL~~a~s~~  288 (682)
                      ..|.-++.-..+..
T Consensus       142 ~~Lek~leL~~k~~  155 (194)
T PF15619_consen  142 QELEKQLELENKSF  155 (194)
T ss_pred             HHHHHHHHHHhhHH
Confidence            88888776655544

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.85  E-value=1.9  Score=52.47  Aligned_cols=61  Identities=18%  Similarity=0.182  Sum_probs=42.6

Q ss_pred             cCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHHHHhhHHHHHHhHHH
Q 005704           30 DFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEE   90 (682)
Q Consensus        30 ~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~eekl~~~~~LLK~yQ~E   90 (682)
                      +.+|+..+..++..+.++...|+++..=-+-+.+.--.|-|+...+.+..++.+=++|+.-
T Consensus      1252 E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~~s 1312 (1758)
T KOG0994|consen 1252 EETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRHAYEQS 1312 (1758)
T ss_pred             hhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Confidence            4567777777778888888888776654444445555555666667888888888888753

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=96.81  E-value=0.62  Score=46.14  Aligned_cols=123  Identities=16%  Similarity=0.329  Sum_probs=70.4

Q ss_pred             HHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          136 ESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLR  215 (682)
Q Consensus       136 e~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~  215 (682)
                      +.++..|++.+.-++.++..+.-.+.+   +.+++.++++...+.        ++.        ...+..+-..+.+.++
T Consensus         3 e~~va~lnrri~~leeele~aqErl~~---a~~KL~Eaeq~~dE~--------er~--------~Kv~enr~~kdEE~~e   63 (205)
T KOG1003|consen    3 EADVAALNRRIQLLEEELDRAQERLAT---ALQKLEEAEQAADES--------ERG--------MKVIENRAQKLEEKME   63 (205)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcccHH--------HHH--------HHHHHHHHHhhHHHHH
Confidence            346667777777666666665444433   444555554433111        111        1122333344444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704          216 QAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (682)
Q Consensus       216 ~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~  288 (682)
                      .++.++++.+.--+       +...+|++    +.--|-|+..|||++..|+...+....+|-+++.-..++.
T Consensus        64 ~~e~qLkEAk~iaE-------~adrK~eE----VarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nl  125 (205)
T KOG1003|consen   64 AQEAQLKEAKHIAE-------KADRKYEE----VARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNL  125 (205)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence            55555555443333       22223321    2344689999999999999999999999999988776654

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.77  E-value=0.00033  Score=83.55  Aligned_cols=44  Identities=30%  Similarity=0.314  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (682)
Q Consensus       503 ~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~  546 (682)
                      .+-++.+..+.+....++..|+.+.+...+++..++.+++.++.
T Consensus       480 ~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~  523 (713)
T PF05622_consen  480 EEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQK  523 (713)
T ss_dssp             --------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556678888888888888888888888888888888776664

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=1.8  Score=50.94  Aligned_cols=38  Identities=24%  Similarity=0.172  Sum_probs=30.8

Q ss_pred             HHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhc
Q 005704           76 KLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLY  113 (682)
Q Consensus        76 kl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~  113 (682)
                      +......|+--||.+|+.++.+++.-..-|...|+.+.
T Consensus       312 ~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (698)
T KOG0978|consen  312 KSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLK  349 (698)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677888999999999999988888888777766

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.70  E-value=0.75  Score=49.01  Aligned_cols=87  Identities=29%  Similarity=0.396  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHH-----------HHHHHHHHHHHHHHHHH
Q 005704          201 EILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSE-----------VNLLMDEVERAQTRLLS  269 (682)
Q Consensus       201 ~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aE-----------le~l~~DLEra~~R~~~  269 (682)
                      ..+.++...|..+|..+...+..|+-.+... .+|...-+..+++.......           -.--...++..+.|+..
T Consensus        93 ~~L~~~~~~le~~L~~~~e~v~qLrHeL~~k-deLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~  171 (306)
T PF04849_consen   93 QDLSERNEALEEQLGAALEQVEQLRHELSMK-DELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKS  171 (306)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHH
Confidence            3445556666777777777777777766633 34544444333331111000           01112345667889999


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q 005704          270 LQREKDLLRSQLQSANDEA  288 (682)
Q Consensus       270 LE~e~E~Lr~eL~~a~s~~  288 (682)
                      ||.+|..||.+.......+
T Consensus       172 LEeEN~~LR~Ea~~L~~et  190 (306)
T PF04849_consen  172 LEEENEQLRSEASQLKTET  190 (306)
T ss_pred             HHHHHHHHHHHHHHhhHHH
Confidence            9999999999988776655

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.67  E-value=1.1  Score=47.23  Aligned_cols=27  Identities=26%  Similarity=0.349  Sum_probs=22.1

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005704          405 SLLLDKNRKMEHELTQLKVKLSEKTSL  431 (682)
Q Consensus       405 ~lLl~kNrkL~~eLt~LR~~~~~l~~~  431 (682)
                      .+|-+||+.|-++...|+..+..++.+
T Consensus       274 lllEErNKeL~ne~n~LkEr~~qyEkE  300 (305)
T PF14915_consen  274 LLLEERNKELINECNHLKERLYQYEKE  300 (305)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999887766654

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.61  E-value=2.2  Score=49.83  Aligned_cols=56  Identities=5%  Similarity=0.100  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHH
Q 005704          204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDE  259 (682)
Q Consensus       204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~D  259 (682)
                      ......|-..=+.-+..+..|+..+......|.+.+..++.........+.-+..+
T Consensus       121 ~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~  176 (560)
T PF06160_consen  121 LDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEE  176 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHH
Confidence            33333333333444556666666666666666666666665544443333333333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.55  E-value=2.3  Score=49.29  Aligned_cols=54  Identities=24%  Similarity=0.250  Sum_probs=28.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 005704          501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF  557 (682)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRy  557 (682)
                      ....-+.-+.+||+   ..+.-|.-++..+...-+.|-.|+-+|-..|-+|-||+.-
T Consensus       852 tt~eh~eall~Qre---GElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~  905 (961)
T KOG4673|consen  852 TTSEHYEALLRQRE---GELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADR  905 (961)
T ss_pred             chHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445667777765   3344444444444444455555555555555555555544

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.54  E-value=2.7  Score=50.00  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=18.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE  448 (682)
Q Consensus       413 kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~  448 (682)
                      .++.++..++..+..+..++..+..++..++.++..
T Consensus       432 ~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  467 (650)
T TIGR03185       432 EAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE  467 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555554443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=96.54  E-value=3.6  Score=51.44  Aligned_cols=81  Identities=16%  Similarity=0.181  Sum_probs=42.0

Q ss_pred             HHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhH
Q 005704           81 NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ  160 (682)
Q Consensus        81 ~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~  160 (682)
                      ..+++.-+..|++.-...+.++...=..|+..-..|--.|....-.      ..++.+++.++.++.....++.++..+.
T Consensus       690 ~ef~~~l~~~i~s~p~~~~~~~~~l~k~~k~~e~l~~~~~~~~~~~------~l~~~~i~e~~~~l~~~~~el~~~~~~~  763 (1294)
T KOG0962|consen  690 VEFIKKLESKIDSAPDKLEEAEVELSKEEKIFEILLKLKPTFGSII------KLIDKEIPELEKELQEVYEELGDLSEEE  763 (1294)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH------HHHhhhhhHHHHHHHHHHHHHHhhhhhh
Confidence            4455555556655555555555555554444222232233322111      1244466666777777777777777666


Q ss_pred             HHHHHHH
Q 005704          161 STIRRLE  167 (682)
Q Consensus       161 ~~~~~Lk  167 (682)
                      .+...+-
T Consensus       764 e~~~~~l  770 (1294)
T KOG0962|consen  764 EDDEKLL  770 (1294)
T ss_pred             hHHHHHh
Confidence            6544443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.52  E-value=4.4  Score=52.34  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          508 VICNQRDRFRARLRETEEEVRQLKE  532 (682)
Q Consensus       508 Ivt~QRDRfr~r~~ELE~el~~~~~  532 (682)
                      -.+-+|+....++..|+.++..+..
T Consensus       642 ~~~~~~~~~~~~~~~L~~~i~~l~~  666 (1486)
T PRK04863        642 ELTVERDELAARKQALDEEIERLSQ  666 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3455666666666666666665554

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.45  E-value=2  Score=51.08  Aligned_cols=135  Identities=19%  Similarity=0.248  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcC
Q 005704          221 VATMQKLHELAQSQLFEVRAQSDEERV---AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLD  297 (682)
Q Consensus       221 l~eL~~~le~~Q~eL~~l~~k~~ee~~---a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~  297 (682)
                      ++++....-..+.+...++.+|.+-..   ....-..-+..-+|.+++-+.+++++|..|...|++..+....-... -+
T Consensus       412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K-~e  490 (980)
T KOG0980|consen  412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETK-TE  490 (980)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hH
Confidence            344444444444444444444432221   12223344555667777777789999999999998887765421000 00


Q ss_pred             chhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          298 SNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKEL  359 (682)
Q Consensus       298 ~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l  359 (682)
                         +....+.+.+.+..-|..++..++..+......++.+...+...+.++-...+.+....
T Consensus       491 ---~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~  549 (980)
T KOG0980|consen  491 ---SQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE  549 (980)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence               11111334444455555666666666666677777777777777777666666655554

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=96.35  E-value=3.6  Score=49.42  Aligned_cols=94  Identities=22%  Similarity=0.317  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          257 MDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN  336 (682)
Q Consensus       257 ~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~  336 (682)
                      ..|+.....|+..+|++|-.|+-++-.                       ..++.+|+-.+-++.+--  .+....+|-.
T Consensus       133 e~~~~~l~~~l~~~eken~~Lkye~~~-----------------------~~keleir~~E~~~~~~~--ae~a~kqhle  187 (769)
T PF05911_consen  133 EAEIEDLMARLESTEKENSSLKYELHV-----------------------LSKELEIRNEEREYSRRA--AEAASKQHLE  187 (769)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHhHHH--HHHHHHHHHH
Confidence            344455566888899999998888642                       233334444444433221  2233444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHH
Q 005704          337 EIKKLNALLIEKEAALEDMKKELQA-RPTSKMVDDLRKKVKILQ  379 (682)
Q Consensus       337 ~~~~L~~ql~~~~~~~~~le~~l~~-~~~~sDyeelK~EL~~Lk  379 (682)
                      -+.++    ..+..+...|.....+ +|.++-...+|.|++.|.
T Consensus       188 ~vkki----akLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~  227 (769)
T PF05911_consen  188 SVKKI----AKLEAECQRLRALVRKKLPGPAALAQMKNEVESLG  227 (769)
T ss_pred             HHHHH----HHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhc
Confidence            33333    2333444555555553 488899999999999994

The function of this family is unknown.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.34  E-value=1.6  Score=47.44  Aligned_cols=46  Identities=24%  Similarity=0.229  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHhc
Q 005704          336 NEIKKLNALLIEKEAALEDMKKELQAR--PTSKMVDDLRKKVKILQAV  381 (682)
Q Consensus       336 ~~~~~L~~ql~~~~~~~~~le~~l~~~--~~~sDyeelK~EL~~Lk~i  381 (682)
                      ..+..+..+...+...+.++++.+...  .+..|+..||.+++.|+.+
T Consensus       244 ~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~  291 (325)
T PF08317_consen  244 EKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL  291 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            345666666667777777777776654  3567899999999999985

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.32  E-value=3.3  Score=48.55  Aligned_cols=84  Identities=20%  Similarity=0.334  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHH
Q 005704          428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLK  507 (682)
Q Consensus       428 l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~  507 (682)
                      .-.++..+..++..+..++..-..++.+|..+++++....                                        
T Consensus       445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~----------------------------------------  484 (594)
T PF05667_consen  445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV----------------------------------------  484 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------------------------------------
Confidence            3345555556666666677777777778887777664321                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 005704          508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI  555 (682)
Q Consensus       508 Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEki  555 (682)
                          .|--|-.||.|.=..+++++..|...-.+...|+.+-..|=+++
T Consensus       485 ----~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL  528 (594)
T PF05667_consen  485 ----NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKL  528 (594)
T ss_pred             ----CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                15556666777777777777777777777777777433333343

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=96.26  E-value=0.62  Score=56.26  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (682)
Q Consensus       250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~  285 (682)
                      ..+|..+...|..++.+...++.+...++..+....
T Consensus       236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~  271 (754)
T TIGR01005       236 TQQLAELNTELSRARANRAAAEGTADSVKKALQNGG  271 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            478889999999999999999999999999997643

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.23  E-value=1.5  Score=43.96  Aligned_cols=179  Identities=18%  Similarity=0.312  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 005704          249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS  328 (682)
Q Consensus       249 ~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~  328 (682)
                      +.-.|..|..++.-++.++.++..||..|+.--..-......-    .    .-++++   ...|....+|+..|...+.
T Consensus        10 r~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~----e----~~e~~L---pqll~~h~eEvr~Lr~~LR   78 (194)
T PF15619_consen   10 RLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKY----E----DTEAEL---PQLLQRHNEEVRVLRERLR   78 (194)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----hhhhhH---HHHHHHHHHHHHHHHHHHH
Confidence            3445566667777777777888888887775432211111100    0    111122   2225555555555555544


Q ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHH
Q 005704          329 NEREQH---MNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMES  405 (682)
Q Consensus       329 ~~r~~~---~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~  405 (682)
                      ......   ...+.+...++......+..|++..... +-.+-+++.++|+.+...    .++       .......|+.
T Consensus        79 ~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dk-nL~eReeL~~kL~~~~~~----l~~-------~~~ki~~Lek  146 (194)
T PF15619_consen   79 KSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDK-NLAEREELQRKLSQLEQK----LQE-------KEKKIQELEK  146 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhHHHHHHHHHHHHHH----HHH-------HHHHHHHHHH
Confidence            443332   2233444444555555555566655532 235789999999999863    211       1123567888


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          406 LLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQ  450 (682)
Q Consensus       406 lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~  450 (682)
                      -|---|+....++...+..+.++...+..++.++..+.+.+.+-.
T Consensus       147 ~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe  191 (194)
T PF15619_consen  147 QLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE  191 (194)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888888899999999999999998888888888888877643

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=96.21  E-value=2.2  Score=45.51  Aligned_cols=109  Identities=14%  Similarity=0.179  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccCCCC-CcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          264 QTRLLSLQREKDLLRSQLQSANDEAGSRNSD-TLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLN  342 (682)
Q Consensus       264 ~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~-~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~  342 (682)
                      ..++..|+.+...|...|....++..++... ......+.   .......|..|..++.+|...+......+...+....
T Consensus       184 ~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt---~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~  260 (310)
T PF09755_consen  184 WKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDT---AERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYL  260 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677889999999999999876653322100 00001111   1122444899999999999998887777777776666


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 005704          343 ALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKI  377 (682)
Q Consensus       343 ~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~  377 (682)
                      .....+......|+..|+.-  ..-.+.+.+.|..
T Consensus       261 ~eek~ireEN~rLqr~L~~E--~erreal~R~lse  293 (310)
T PF09755_consen  261 QEEKEIREENRRLQRKLQRE--VERREALCRHLSE  293 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            66666666777777777653  2335555555543

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.16  E-value=4  Score=48.05  Aligned_cols=90  Identities=16%  Similarity=0.250  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchh
Q 005704          425 LSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSS  504 (682)
Q Consensus       425 ~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  504 (682)
                      +..+....+.|+..+..+-.+..+++..+++||-....+......                                ...
T Consensus       409 h~aLq~amekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et~t--------------------------------i~e  456 (617)
T PF15070_consen  409 HQALQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGETDT--------------------------------IGE  456 (617)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccc--------------------------------hhh
Confidence            455667788888889999999999999999999888777654321                                111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (682)
Q Consensus       505 iL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~  546 (682)
                      -+.+..+||-=.+.|-.+-++.+.++-+....++..+..|+.
T Consensus       457 yi~ly~~qr~~~k~r~~e~~~~i~~l~~~~e~mk~kl~elq~  498 (617)
T PF15070_consen  457 YITLYQSQRAVLKQRHQEKEEYISRLAQDREEMKVKLLELQE  498 (617)
T ss_pred             hhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233455666666666666666665555555555555544444

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.16  E-value=3.4  Score=47.24  Aligned_cols=35  Identities=26%  Similarity=0.479  Sum_probs=23.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704          249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS  283 (682)
Q Consensus       249 ~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~  283 (682)
                      ..-.|+++..+++.-...+..+..++..|+-+++.
T Consensus       292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~  326 (581)
T KOG0995|consen  292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL  326 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556777777766666666677777777777654

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.11  E-value=5.6  Score=49.23  Aligned_cols=54  Identities=22%  Similarity=0.333  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHhhHHHHHHhh
Q 005704          506 LKVICNQRDRFRARLRETEEEVRQ---LKEKIGVLTAELEKTKADNVQLYGKIRFVQ  559 (682)
Q Consensus       506 L~Ivt~QRDRfr~r~~ELE~el~~---~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylq  559 (682)
                      +.-+..+.+.++.+..++...+..   ....+.....++..++..--+++..+..+.
T Consensus       690 ~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  746 (908)
T COG0419         690 LEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLE  746 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555554   444444555555555555555553444433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.08  E-value=1.3  Score=44.73  Aligned_cols=145  Identities=20%  Similarity=0.277  Sum_probs=88.0

Q ss_pred             HHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhH
Q 005704           81 NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ  160 (682)
Q Consensus        81 ~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~  160 (682)
                      -.|||+.-.+|..+-++....+..+..+-.--...-.|-             ..++.++..|+..+..|.+....+++-.
T Consensus        26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL-------------~~a~~e~~eL~k~L~~y~kdK~~L~~~k   92 (201)
T PF13851_consen   26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPL-------------KKAEEEVEELRKQLKNYEKDKQSLQNLK   92 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357888888999888888877777665544332222221             1244467777777777777776666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          161 STIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQD----QLRQAKDSVATMQKLHELAQSQLF  236 (682)
Q Consensus       161 ~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~----ql~~ae~~l~eL~~~le~~Q~eL~  236 (682)
                      ..+..++.+++.++...+...+ +....+.+...-    .+.+.....+.+.    +---+++++..|...++..+.+|.
T Consensus        93 ~rl~~~ek~l~~Lk~e~evL~q-r~~kle~ErdeL----~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~  167 (201)
T PF13851_consen   93 ARLKELEKELKDLKWEHEVLEQ-RFEKLEQERDEL----YRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN  167 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666555543332 233233332222    2233333333333    344489999999999999999998


Q ss_pred             Hhhhcch
Q 005704          237 EVRAQSD  243 (682)
Q Consensus       237 ~l~~k~~  243 (682)
                      +.-...+
T Consensus       168 evl~~~n  174 (201)
T PF13851_consen  168 EVLAAAN  174 (201)
T ss_pred             HHHHHcC
Confidence            7755433

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=96.08  E-value=2.5  Score=46.94  Aligned_cols=28  Identities=11%  Similarity=0.203  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704          260 VERAQTRLLSLQREKDLLRSQLQSANDE  287 (682)
Q Consensus       260 LEra~~R~~~LE~e~E~Lr~eL~~a~s~  287 (682)
                      ++++=.+..+=-.|+.+||.+|+.+..+
T Consensus       451 mdk~LskKeeeverLQ~lkgelEkat~S  478 (527)
T PF15066_consen  451 MDKTLSKKEEEVERLQQLKGELEKATTS  478 (527)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3444333333333466777777766543

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.94  E-value=4.1  Score=46.23  Aligned_cols=243  Identities=15%  Similarity=0.190  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 005704          204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVER-------AQTRLLSLQRE  273 (682)
Q Consensus       204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee---~~a~~aEle~l~~DLEr-------a~~R~~~LE~e  273 (682)
                      ..++..+-.++-+++..++.++.-+...|.+...+.....+.   .++..++---+..+|-.       .=+.-.+||.+
T Consensus        99 aakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE  178 (772)
T KOG0999|consen   99 AAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE  178 (772)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344445555555556666666665555555554443322211   11122222223333322       22233677777


Q ss_pred             HHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 005704          274 KDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKE---A  350 (682)
Q Consensus       274 ~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~---~  350 (682)
                      |-.|..+.+....+.   +            +...+.-+|.+|++++.-|-..+++...-..=.-.+|++.+..++   .
T Consensus       179 NIsLQKqVs~LR~sQ---V------------EyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~ERe  243 (772)
T KOG0999|consen  179 NISLQKQVSNLRQSQ---V------------EYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQERE  243 (772)
T ss_pred             cchHHHHHHHHhhhh---h------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            777777766554332   1            111223458888888888887776554332222233444443332   2


Q ss_pred             HHHHHHHHHhcCCChhhHHHHHHHHHHHHhcc--ccCccch---hhh---h------hcchhh----hchH-HHHHHHHh
Q 005704          351 ALEDMKKELQARPTSKMVDDLRKKVKILQAVG--YNSIEAE---DWE---V------ATNDEE----MSKM-ESLLLDKN  411 (682)
Q Consensus       351 ~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iE--f~~~d~~---~~~---~------a~~~~~----~~~L-E~lLl~kN  411 (682)
                      +...|++++..--+..|+--+.   .++=+++  |+.+.+.   |.+   +      ++...+    ...| --+.+..-
T Consensus       244 qk~alkkEL~q~~n~e~~~~~n---~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~isei  320 (772)
T KOG0999|consen  244 QKNALKKELSQYRNAEDISSLN---HLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEI  320 (772)
T ss_pred             HHHHHHHHHHHhcchhhhhhhh---hhheecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHH
Confidence            3334555554432222222222   2222222  3322111   100   0      000000    1122 34566677


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704          412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (682)
Q Consensus       412 rkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~  464 (682)
                      .+|+.+|-........+-.-+...+..+......+.++..-+..|-.++..+.
T Consensus       321 qkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~  373 (772)
T KOG0999|consen  321 QKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALR  373 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            78888888888888888888888888888888888888888888887777665

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.82  E-value=1.3  Score=41.56  Aligned_cols=68  Identities=22%  Similarity=0.395  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704          210 LQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA  284 (682)
Q Consensus       210 L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a  284 (682)
                      +..++..++..+..|+...+.....|       +....++..+-.++..++..+..|+.+|...|.-|..+|+..
T Consensus        64 lr~e~~~~~~~~~~l~~~~~~a~~~l-------~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen   64 LREELQELQQEINELKAEAESAKAEL-------EESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34444445555555555555444443       444556677788999999999999999999999999999753

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.79  E-value=0.39  Score=45.10  Aligned_cols=84  Identities=18%  Similarity=0.268  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQ  280 (682)
Q Consensus       204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee---~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~e  280 (682)
                      ......+...+..+...+..++..++.-.........+|+.+   .+....+|..+..++...+..+..+..+.+..+..
T Consensus         9 ~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~   88 (132)
T PF07926_consen    9 QSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAE   88 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444455555555555554444444556667666   23345667777777777777777777777777777


Q ss_pred             HHhhhhh
Q 005704          281 LQSANDE  287 (682)
Q Consensus       281 L~~a~s~  287 (682)
                      |......
T Consensus        89 l~~~e~s   95 (132)
T PF07926_consen   89 LEESEAS   95 (132)
T ss_pred             HHHHHHh
Confidence            6654443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.77  E-value=1.1  Score=42.76  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          260 VERAQTRLLSLQREKDLLRSQLQSAN  285 (682)
Q Consensus       260 LEra~~R~~~LE~e~E~Lr~eL~~a~  285 (682)
                      .|..+.|+..||.+++.....|..+.
T Consensus        75 ~E~l~rriq~LEeele~ae~~L~e~~  100 (143)
T PF12718_consen   75 AEQLNRRIQLLEEELEEAEKKLKETT  100 (143)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555544444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=95.54  E-value=2  Score=43.80  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          254 NLLMDEVERAQTRLLSLQREKDLLR  278 (682)
Q Consensus       254 e~l~~DLEra~~R~~~LE~e~E~Lr  278 (682)
                      .-....+++...|+..++.+.+...
T Consensus       161 ~~a~~~~er~e~ki~~~ea~a~a~~  185 (221)
T PF04012_consen  161 SSAMDSFERMEEKIEEMEARAEASA  185 (221)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667777777777777655444

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK10698 phage shock protein PspA; Provisional

Probab=95.53  E-value=3.3  Score=42.46  Aligned_cols=120  Identities=17%  Similarity=0.201  Sum_probs=51.3

Q ss_pred             hhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005704          110 QKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQ  189 (682)
Q Consensus       110 ~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E  189 (682)
                      ..|-.+-||.-.|...+.      ++++.+.+++..+...-..-..+..+..   .+...+.+++.+.    ...|..-.
T Consensus        17 ~~ldkaEDP~k~l~q~i~------em~~~l~~~r~alA~~~A~~k~~er~~~---~~~~~~~~~e~kA----~~Al~~G~   83 (222)
T PRK10698         17 ALLEKAEDPQKLVRLMIQ------EMEDTLVEVRSTSARALAEKKQLTRRIE---QAEAQQVEWQEKA----ELALRKEK   83 (222)
T ss_pred             HHHHhhcCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHCCC
Confidence            445567799888776544      3444555555444443332222222222   2222233332222    22222222


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005704          190 RGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS  242 (682)
Q Consensus       190 ~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~  242 (682)
                      ..|-...-.++..+.+....|+.++......+..|+..+...+..|.+++.+.
T Consensus        84 EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~  136 (222)
T PRK10698         84 EDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQ  136 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222211222334444455555555555555555555555555554444443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.52  E-value=7.4  Score=46.20  Aligned_cols=60  Identities=18%  Similarity=0.263  Sum_probs=41.8

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704          404 ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG  463 (682)
Q Consensus       404 E~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~  463 (682)
                      -.++..||-.++.+++....+..++.-.+....+.+..+...+..+..-++..|......
T Consensus       892 ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e~~s~  951 (970)
T KOG0946|consen  892 KALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDEKVSI  951 (970)
T ss_pred             HHHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhhhhcc
Confidence            456677888888888888888888777777777777776666666655555555554433

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.52  E-value=3.4  Score=42.69  Aligned_cols=119  Identities=24%  Similarity=0.323  Sum_probs=57.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005704          138 ENRKMKIELEEYRTEATHLKNQQS----TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQ  213 (682)
Q Consensus       138 E~~kL~~el~~l~~el~~lknq~~----~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~q  213 (682)
                      +...++..+..++.++.++++|..    +++.+.+|+...+.++.     .++ .+++++ .+......|+.+...|.++
T Consensus        39 e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-----~v~-~~~e~~-aL~~E~~~ak~r~~~le~e  111 (239)
T COG1579          39 ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS-----AVK-DERELR-ALNIEIQIAKERINSLEDE  111 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccc-cHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            444555555566666666666532    55556666655555541     111 122222 2444455566666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHH
Q 005704          214 LRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERA  263 (682)
Q Consensus       214 l~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra  263 (682)
                      +..+...++.|....+..+.++..+.....+.......++..+..+....
T Consensus       112 l~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~  161 (239)
T COG1579         112 LAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQEL  161 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555555555554444444444443333333333334444444444333

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=95.47  E-value=2.4  Score=46.47  Aligned_cols=21  Identities=33%  Similarity=0.298  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhh
Q 005704          268 LSLQREKDLLRSQLQSANDEA  288 (682)
Q Consensus       268 ~~LE~e~E~Lr~eL~~a~s~~  288 (682)
                      .-|..|++.||..|..+....
T Consensus       256 ~~l~~EveRlrt~l~~Aqk~~  276 (552)
T KOG2129|consen  256 DKLQAEVERLRTYLSRAQKSY  276 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            346667777777776665443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.41  E-value=9.5  Score=46.70  Aligned_cols=28  Identities=18%  Similarity=0.044  Sum_probs=24.4

Q ss_pred             CCCCCCCChHHHHHhhhhcCChhHHHhh
Q 005704           12 KPNTSSSSPVSVISNFWKDFDLEKEKSL   39 (682)
Q Consensus        12 ~~~~~~~~~~~~a~~~W~~~dl~~lq~~   39 (682)
                      .|++|+-|++-.|+.+--.++.+.|+..
T Consensus        32 GPNGSGKSNlMDAISFVLGekss~LR~~   59 (1141)
T KOG0018|consen   32 GPNGSGKSNLMDAISFVLGEKSSHLRVS   59 (1141)
T ss_pred             CCCCCchHHHHHHHHHHhcCCCcccccc
Confidence            4677889999999999999999998754

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.37  E-value=3.6  Score=41.69  Aligned_cols=131  Identities=18%  Similarity=0.265  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          139 NRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAK  218 (682)
Q Consensus       139 ~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae  218 (682)
                      +..++.++.....+...|+.+......--..+..+=..++.++...+.+.++. ..........+...-..+...|..++
T Consensus        11 ~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~-~~~~~~~i~~~~~erdq~~~dL~s~E   89 (207)
T PF05010_consen   11 IKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQ-KELSEAEIQKLLKERDQAYADLNSLE   89 (207)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33444443333333444443333322222234444445555566555554444 22233333333333344566778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          219 DSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQL  281 (682)
Q Consensus       219 ~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL  281 (682)
                      ....+|+..++....-+..++..  +         +.|..-++.-..|+...+.+.+.|+.-.
T Consensus        90 ~sfsdl~~ryek~K~vi~~~k~N--E---------E~Lkk~~~ey~~~l~~~eqry~aLK~hA  141 (207)
T PF05010_consen   90 KSFSDLHKRYEKQKEVIEGYKKN--E---------ETLKKCIEEYEERLKKEEQRYQALKAHA  141 (207)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHh--H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888988888777666666542  2         2223333344445556666666666543

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.34  E-value=6.1  Score=44.10  Aligned_cols=152  Identities=13%  Similarity=0.149  Sum_probs=75.9

Q ss_pred             hHHHHH----HHhhhhccCCCCHHHHHHHHHHH--hhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005704          101 GENAFL----NIYQKLYEAPDPYPALASIAEQD--LKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLE  174 (682)
Q Consensus       101 aE~aFl----~~Y~~L~eaPDP~PlLe~s~~~~--~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE  174 (682)
                      +|..||    .-|+..-+..|-+..++.-+...  .-.+.+-.++..|+.+++.+-..+.+...-...+..|++|-+.+.
T Consensus       229 Vek~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~  308 (622)
T COG5185         229 VEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALK  308 (622)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455544    45666665554444333322211  111234455666666666665555554433444444444444443


Q ss_pred             HHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH-HHhhHHHH
Q 005704          175 QQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE-RVAKQSEV  253 (682)
Q Consensus       175 ~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee-~~a~~aEl  253 (682)
                      ...     .+....    -..+.-|.+.|-++...|+..++.-+.+|+.|++..+....++...  ....+ -..-.+|-
T Consensus       309 ~D~-----nk~~~~----~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq--~Is~e~fe~mn~Er  377 (622)
T COG5185         309 SDS-----NKYENY----VNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQ--GISTEQFELMNQER  377 (622)
T ss_pred             hhH-----HHHHHH----HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence            222     111111    1234556677777878887777777777777777666544444321  22222 22224555


Q ss_pred             HHHHHHHHHH
Q 005704          254 NLLMDEVERA  263 (682)
Q Consensus       254 e~l~~DLEra  263 (682)
                      +.|..+|++-
T Consensus       378 e~L~reL~~i  387 (622)
T COG5185         378 EKLTRELDKI  387 (622)
T ss_pred             HHHHHHHHHh
Confidence            5666666653

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.29  E-value=1.7  Score=41.49  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=12.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          309 KEKIISELNSELHNIETALSNERE  332 (682)
Q Consensus       309 ke~ei~~L~~e~~~Le~~L~~~r~  332 (682)
                      +.+.|..|+.++......|.....
T Consensus        78 l~rriq~LEeele~ae~~L~e~~e  101 (143)
T PF12718_consen   78 LNRRIQLLEEELEEAEKKLKETTE  101 (143)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHH
Confidence            344456666666555555544433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=95.16  E-value=4.6  Score=45.43  Aligned_cols=23  Identities=13%  Similarity=0.086  Sum_probs=15.4

Q ss_pred             HhhHhhHHHHHHHHHHhHHhhcC
Q 005704           49 ENQENSQKNRRKLAESTRDFKKA   71 (682)
Q Consensus        49 ~~q~~s~~sRK~La~~Tk~Fkk~   71 (682)
                      ..|-+=+.||.-+..-.++++--
T Consensus        70 ~tq~~il~S~~v~~~Vi~~l~l~   92 (444)
T TIGR03017        70 ATQVDIINSDRVAKKVVDKLKLD   92 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCC
Confidence            34445577888887777777654

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.15  E-value=3.9  Score=40.70  Aligned_cols=37  Identities=19%  Similarity=0.343  Sum_probs=17.3

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          404 ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTA  444 (682)
Q Consensus       404 E~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~  444 (682)
                      ++++.+++++.    ..+...+.++..-.+.+..+++.++.
T Consensus       150 da~l~e~t~~i----~eL~~~ieEy~~~teeLR~e~s~LEe  186 (193)
T PF14662_consen  150 DAILSERTQQI----EELKKTIEEYRSITEELRLEKSRLEE  186 (193)
T ss_pred             HHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666655    34444444444444444443333333

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=95.14  E-value=5.8  Score=42.75  Aligned_cols=61  Identities=25%  Similarity=0.228  Sum_probs=52.7

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704          403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (682)
Q Consensus       403 LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~  464 (682)
                      +|. +.-+.++|+.+...++..+..-...+-.+-.+......++..+...+.+||+=.-.++
T Consensus       246 mek-m~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ  306 (309)
T PF09728_consen  246 MEK-MSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ  306 (309)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444 6778899999999999999999999999999999999999999999999987665554

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PRK09039 hypothetical protein; Validated

Probab=95.05  E-value=5  Score=43.91  Aligned_cols=21  Identities=14%  Similarity=0.186  Sum_probs=12.8

Q ss_pred             hHHhhHHHHHHHHHHHHHHHH
Q 005704          135 LESENRKMKIELEEYRTEATH  155 (682)
Q Consensus       135 le~E~~kL~~el~~l~~el~~  155 (682)
                      |..++..+..++++++.+++.
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~   64 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAE   64 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHH
Confidence            455666666666666666555

>PRK09039 hypothetical protein; Validated

Probab=95.05  E-value=1.7  Score=47.49  Aligned_cols=65  Identities=18%  Similarity=0.155  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHH
Q 005704          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETA  326 (682)
Q Consensus       251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~  326 (682)
                      +++.........++..+.-|.++++.||.+|+.......           ..+......+.+|..|...+....+.
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~-----------~ae~~~~~~~~~i~~L~~~L~~a~~~  187 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD-----------ASEKRDRESQAKIADLGRRLNVALAQ  187 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444455555555555666666555554442           22222334455577777777776654

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.03  E-value=1.9  Score=49.42  Aligned_cols=38  Identities=26%  Similarity=0.297  Sum_probs=30.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (682)
Q Consensus       248 a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~  285 (682)
                      ....++..+...+..++.++..++.+...|+..+....
T Consensus       201 ~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~  238 (498)
T TIGR03007       201 DYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEE  238 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            45577888888888888899999999999988877433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PLN03188 kinesin-12 family protein; Provisional

Probab=94.95  E-value=14  Score=46.23  Aligned_cols=153  Identities=20%  Similarity=0.252  Sum_probs=87.2

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch--------HH-HHhhHHHHHHHHH
Q 005704          188 KQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD--------EE-RVAKQSEVNLLMD  258 (682)
Q Consensus       188 ~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~--------ee-~~a~~aEle~l~~  258 (682)
                      .|+.+.+++++.......=..-+-++-.+++.+--+|-+.+...+.-+.+.+....        .. ..+.+|||..|..
T Consensus      1090 ~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ 1169 (1320)
T PLN03188       1090 TEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKV 1169 (1320)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence            34444555554433322223333456666777777777777777766665543221        11 3445899999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          259 EVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENS--LSAKEKIISELNSELHNIETALSNEREQHMN  336 (682)
Q Consensus       259 DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~e--l~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~  336 (682)
                      +-|+.+   .-|-.+|..|+.||-..-.+.++...  . ...-.|+|  ...-++.....+.|+..+-..++.++.+|..
T Consensus      1170 ereker---~~~~~enk~l~~qlrdtaeav~aage--l-lvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~ 1243 (1320)
T PLN03188       1170 EREKER---RYLRDENKSLQAQLRDTAEAVQAAGE--L-LVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHEN 1243 (1320)
T ss_pred             HHHHHH---HHHHHhhHHHHHHHhhHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877754   34667888999998766555443210  0 00011111  1112333455667777777777777777777


Q ss_pred             HHHHHHHHHH
Q 005704          337 EIKKLNALLI  346 (682)
Q Consensus       337 ~~~~L~~ql~  346 (682)
                      +|..|++.+.
T Consensus      1244 e~~t~~q~~a 1253 (1320)
T PLN03188       1244 EISTLNQLVA 1253 (1320)
T ss_pred             HHHHHHHHHh
Confidence            7766665553

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.83  E-value=2.1  Score=43.20  Aligned_cols=42  Identities=17%  Similarity=0.176  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 005704          202 ILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD  243 (682)
Q Consensus       202 ~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~  243 (682)
                      +...+...++.++..++-..+.|...+...+.+-.++..+..
T Consensus        90 ~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~  131 (201)
T PF13851_consen   90 NLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE  131 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666667777777777777777766666666655543

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=94.79  E-value=16  Score=45.97  Aligned_cols=47  Identities=15%  Similarity=0.193  Sum_probs=30.0

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI  453 (682)
Q Consensus       407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~  453 (682)
                      +++.|++|..+|...-...+.+.++.......+..+.+.....++-+
T Consensus       263 ~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi  309 (1109)
T PRK10929        263 QFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS  309 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55678888777777777666666666666666666555555444443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.79  E-value=7.7  Score=42.34  Aligned_cols=13  Identities=23%  Similarity=0.562  Sum_probs=8.7

Q ss_pred             hhhcChhhhhhHh
Q 005704          595 EDDINPFAAFSKK  607 (682)
Q Consensus       595 E~~L~Pf~~F~~~  607 (682)
                      -..|.|-.+||.+
T Consensus       422 ~d~l~~A~qfRAr  434 (499)
T COG4372         422 SDRLSPARQFRAR  434 (499)
T ss_pred             ccccchHHHhhhc
Confidence            3467777777755

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=94.76  E-value=10  Score=43.74  Aligned_cols=40  Identities=10%  Similarity=0.010  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704          425 LSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (682)
Q Consensus       425 ~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~  464 (682)
                      ..+++.++..+...+-.....++.+-.....|--.|+++.
T Consensus       387 ~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~  426 (511)
T PF09787_consen  387 WNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLE  426 (511)
T ss_pred             cHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHH
Confidence            3466666666666666666666666655555555555555

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>TIGR02977 phageshock_pspA phage shock protein A

Probab=94.68  E-value=5.8  Score=40.49  Aligned_cols=121  Identities=21%  Similarity=0.253  Sum_probs=55.1

Q ss_pred             hhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005704          110 QKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQ  189 (682)
Q Consensus       110 ~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E  189 (682)
                      ..+-.+-||.-.|...+.      +++..+.+.+..+...-.....+..+   +..+..++.+++.+.    ...+..-.
T Consensus        17 ~~~dk~EDP~~~l~q~ir------em~~~l~~ar~~lA~~~a~~k~~e~~---~~~~~~~~~~~~~~A----~~Al~~G~   83 (219)
T TIGR02977        17 ALLDKAEDPEKMIRLIIQ------EMEDTLVEVRTTSARTIADKKELERR---VSRLEAQVADWQEKA----ELALSKGR   83 (219)
T ss_pred             HHHHhccCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHCCC
Confidence            345567799887766544      34445555555554433332222222   222333333333332    22222222


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 005704          190 RGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD  243 (682)
Q Consensus       190 ~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~  243 (682)
                      ..|-...-.++..+.+....|+.++..++..+..|+..+...+.++...+.+.+
T Consensus        84 EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~  137 (219)
T TIGR02977        84 EDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK  137 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222333344455555555555555555555555555555555554433

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.62  E-value=5.3  Score=39.75  Aligned_cols=131  Identities=16%  Similarity=0.219  Sum_probs=67.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccC
Q 005704          306 LSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNS  385 (682)
Q Consensus       306 l~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~  385 (682)
                      +..++.--..|..++..|..++...-+..    +.|...+..++.....++..++      -|.-|+.||.-||..-.. 
T Consensus        10 v~dL~~~n~~L~~en~kL~~~ve~~ee~n----a~L~~e~~~L~~q~~s~Qqal~------~aK~l~eEledLk~~~~~-   78 (193)
T PF14662_consen   10 VEDLQLNNQKLADENAKLQRSVETAEEGN----AQLAEEITDLRKQLKSLQQALQ------KAKALEEELEDLKTLAKS-   78 (193)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-
Confidence            33333334556666666665544332221    2233223333333333333222      366677777777743000 


Q ss_pred             ccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          386 IEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL  461 (682)
Q Consensus       386 ~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~  461 (682)
                      .+          ..    -.-|...+|.++.+...|-..+..++.+...+..+...+.....++-..+..|-..|-
T Consensus        79 lE----------E~----~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~  140 (193)
T PF14662_consen   79 LE----------EE----NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLC  140 (193)
T ss_pred             HH----------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHH
Confidence            00          00    1236666777777777777777777766666666666666666666555555555543

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=94.55  E-value=21  Score=46.27  Aligned_cols=27  Identities=19%  Similarity=0.236  Sum_probs=22.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          501 DQSSMLKVICNQRDRFRARLRETEEEV  527 (682)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~r~~ELE~el  527 (682)
                      +...++..|..++..-+.-+.|-|.+|
T Consensus      1083 ~~~~l~~~l~~~i~~~~~ll~e~er~l 1109 (1353)
T TIGR02680      1083 TPAGLLARLEQEIAQRRELLTAREREL 1109 (1353)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            567788888999888888888887777

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.51  E-value=13  Score=43.90  Aligned_cols=21  Identities=29%  Similarity=0.316  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 005704          264 QTRLLSLQREKDLLRSQLQSA  284 (682)
Q Consensus       264 ~~R~~~LE~e~E~Lr~eL~~a  284 (682)
                      +.+...|+-|++.|...+.+.
T Consensus       436 nak~~ql~~eletLn~k~qql  456 (1118)
T KOG1029|consen  436 NAKKKQLQQELETLNFKLQQL  456 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=94.50  E-value=15  Score=44.25  Aligned_cols=84  Identities=19%  Similarity=0.213  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---chHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          201 EILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQ---SDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLL  277 (682)
Q Consensus       201 ~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k---~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~L  277 (682)
                      -.|+.+-..+.....++...-.+|-.++...+.++......   .+.+.......|+.+.....++..+..+...-.+.|
T Consensus       420 l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l  499 (980)
T KOG0980|consen  420 LAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESL  499 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33444444455555555555555555555544444422221   122344455666666666666666666666666666


Q ss_pred             HHHHHhh
Q 005704          278 RSQLQSA  284 (682)
Q Consensus       278 r~eL~~a  284 (682)
                      +.||..+
T Consensus       500 ~~El~~l  506 (980)
T KOG0980|consen  500 RQELALL  506 (980)
T ss_pred             HHHHHHH
Confidence            6666543

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.47  E-value=11  Score=42.85  Aligned_cols=48  Identities=17%  Similarity=0.254  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHH
Q 005704          507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGK  554 (682)
Q Consensus       507 ~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEk  554 (682)
                      .+..+-...+++..+..|.+...+-..+..-++.+...+.|=...-++
T Consensus       314 el~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er  361 (772)
T KOG0999|consen  314 ELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRER  361 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHH
Confidence            344555566666677666666666666666666555555544433333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.42  E-value=4.7  Score=38.33  Aligned_cols=17  Identities=35%  Similarity=0.368  Sum_probs=7.2

Q ss_pred             hhhhHHHHHHHHHHHHH
Q 005704          306 LSAKEKIISELNSELHN  322 (682)
Q Consensus       306 l~~ke~ei~~L~~e~~~  322 (682)
                      +..+...|++|+.-+..
T Consensus        89 lq~~q~kv~eLE~~~~~  105 (140)
T PF10473_consen   89 LQKKQEKVSELESLNSS  105 (140)
T ss_pred             HHHHHHHHHHHHHHhHH
Confidence            33333444444444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.25  E-value=16  Score=43.59  Aligned_cols=62  Identities=18%  Similarity=0.345  Sum_probs=30.9

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Q 005704          402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAEL--TAKINEQQKLIQKLEDDILKG  463 (682)
Q Consensus       402 ~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l--~~el~~~~~l~~kLE~DL~~~  463 (682)
                      .+..++..-.+...+++..++..+..++.++..+...+...  ...++.+......++.++..+
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~  440 (650)
T TIGR03185       377 QLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRS  440 (650)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Confidence            34443343333445556666666666666666665555543  233444444444444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=94.17  E-value=1.8  Score=49.09  Aligned_cols=87  Identities=17%  Similarity=0.277  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 005704          249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS  328 (682)
Q Consensus       249 ~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~  328 (682)
                      -...|+.|..++..+..|+.-...+.+.|...|..+..                  ++..++.++..+...+.+|+..|.
T Consensus       418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~------------------ek~~l~eeL~~a~~~i~~LqDEL~  479 (518)
T PF10212_consen  418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEK------------------EKESLEEELKEANQNISRLQDELE  479 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999876533                  233445567777888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          329 NEREQHMNEIKKLNALLIEKEAALE  353 (682)
Q Consensus       329 ~~r~~~~~~~~~L~~ql~~~~~~~~  353 (682)
                      ..|..+..++..|.+.+..++..+.
T Consensus       480 TTr~NYE~QLs~MSEHLasmNeqL~  504 (518)
T PF10212_consen  480 TTRRNYEEQLSMMSEHLASMNEQLA  504 (518)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888777766655544333

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.17  E-value=8  Score=44.26  Aligned_cols=97  Identities=15%  Similarity=0.217  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccCC--CCCcC--------chhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          264 QTRLLSLQREKDLLRSQLQSANDEAGSRN--SDTLD--------SNSYLENSLSAKEKIISELNSELHNIETALSNEREQ  333 (682)
Q Consensus       264 ~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~--~~~~~--------~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~  333 (682)
                      +-++.++.++.+.|+.++.+......+..  ....+        .....+.++...+.++..|..+...++..+...-. 
T Consensus       274 hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-  352 (498)
T TIGR03007       274 HPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPE-  352 (498)
T ss_pred             ChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-
Confidence            34456777788888877766533211100  00000        11233455555556666666666666666555443 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005704          334 HMNEIKKLNALLIEKEAALEDMKKELQA  361 (682)
Q Consensus       334 ~~~~~~~L~~ql~~~~~~~~~le~~l~~  361 (682)
                      ...+...|+...+..+.....+-+.++.
T Consensus       353 ~~~el~~L~Re~~~~~~~Y~~l~~r~ee  380 (498)
T TIGR03007       353 VEAELTQLNRDYEVNKSNYEQLLTRRES  380 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666665555555555555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.97  E-value=20  Score=43.72  Aligned_cols=26  Identities=19%  Similarity=0.013  Sum_probs=18.5

Q ss_pred             CCCCCCChHHHHHhhhhcCChhHHHh
Q 005704           13 PNTSSSSPVSVISNFWKDFDLEKEKS   38 (682)
Q Consensus        13 ~~~~~~~~~~~a~~~W~~~dl~~lq~   38 (682)
                      .++|+-|+|=||+.+--.=+.+.|..
T Consensus        33 rNGSGKSNFF~AIrFVLSDey~hLk~   58 (1200)
T KOG0964|consen   33 RNGSGKSNFFHAIRFVLSDEYSHLKR   58 (1200)
T ss_pred             CCCCCchhhHHHhhhhcccchhhcCH
Confidence            35577899999998876655665543

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.85  E-value=0.8  Score=45.87  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (682)
Q Consensus       250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~  285 (682)
                      .+|+..+...+..+..++..|+.+|..|-.++-...
T Consensus       150 ~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k  185 (194)
T PF08614_consen  150 QDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK  185 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555555666667788889999999988876543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=93.80  E-value=7.6  Score=45.95  Aligned_cols=102  Identities=20%  Similarity=0.303  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ  282 (682)
Q Consensus       203 ~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~  282 (682)
                      ++.+..+|-+-++.++...+.+..-+.....+|...+..++.+.+..--|++.....+...+-++.+.|.||-.|.--  
T Consensus       453 lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~it--  530 (861)
T PF15254_consen  453 LQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGIT--  530 (861)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhH--
Confidence            455666677777777778888888777788888888888888888778888888888888888889999988777643  


Q ss_pred             hhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005704          283 SANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSN  329 (682)
Q Consensus       283 ~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~  329 (682)
                                             +.++|.+|.+|++=++.|+.+...
T Consensus       531 -----------------------lrQrDaEi~RL~eLtR~LQ~Sma~  554 (861)
T PF15254_consen  531 -----------------------LRQRDAEIERLRELTRTLQNSMAK  554 (861)
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   455677788888777777766443

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=93.52  E-value=3.5  Score=41.02  Aligned_cols=89  Identities=20%  Similarity=0.210  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          197 QKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQS-QLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKD  275 (682)
Q Consensus       197 eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~-eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E  275 (682)
                      .+..+....-...|+.++...++.+.+|...+...+. ...... .  .........|+.+..-||-.+.|...|..-|.
T Consensus         8 qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~-~--~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~   84 (182)
T PF15035_consen    8 QEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQR-R--RSEEEHSPDLEEALIRLEEEQQRSEELAQVNA   84 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCccccc-c--cccccCcccHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3344444555566677777777777777666632110 000000 0  00111235566677778888999999999999


Q ss_pred             HHHHHHHhhhhhh
Q 005704          276 LLRSQLQSANDEA  288 (682)
Q Consensus       276 ~Lr~eL~~a~s~~  288 (682)
                      -||++|+.++...
T Consensus        85 lLReQLEq~~~~N   97 (182)
T PF15035_consen   85 LLREQLEQARKAN   97 (182)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887665

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=93.27  E-value=17  Score=40.68  Aligned_cols=90  Identities=13%  Similarity=0.287  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccc
Q 005704          415 EHELTQLKVKLSEKTSLLE----TAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEK  490 (682)
Q Consensus       415 ~~eLt~LR~~~~~l~~~l~----~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (682)
                      ..+|+..+..+..-+.++.    ....+...+...+.+.+++..+|+.++..                            
T Consensus       170 ~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~----------------------------  221 (420)
T COG4942         170 LKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSA----------------------------  221 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Confidence            3444444444444444444    34445555555566777777777777653                            


Q ss_pred             cccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          491 ADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK  543 (682)
Q Consensus       491 ~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~  543 (682)
                                 ...-+..+..+=.+++..+..++.+..+....-..-+..-..
T Consensus       222 -----------~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~aa~~~  263 (420)
T COG4942         222 -----------DQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAAR  263 (420)
T ss_pred             -----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       344566777788888888888888777666666555544333

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=93.16  E-value=15  Score=39.73  Aligned_cols=137  Identities=18%  Similarity=0.222  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhh
Q 005704          313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWE  392 (682)
Q Consensus       313 i~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~  392 (682)
                      ...+..+|..|..++..+-+++.---..+...+....-++.-++.+++..  ...+..-......++.+-+.        
T Consensus       130 ~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~--~~~~~~e~~k~~~~~~~~l~--------  199 (309)
T PF09728_consen  130 NIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQ--QEEAEQEKEKAKQEKEILLE--------  199 (309)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHH--------
Confidence            44577777777777777777666544444444444444444444444432  11122222222222221000        


Q ss_pred             hhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704          393 VATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS  466 (682)
Q Consensus       393 ~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~  466 (682)
                            ....+.. +......|..+|..+-....+.+..+.....-+.....+++...+-+.+||.+-......
T Consensus       200 ------~~~~~~~-~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k  266 (309)
T PF09728_consen  200 ------EAAQVQT-LKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSK  266 (309)
T ss_pred             ------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0001111 333344444444444444444444444444455555566777777777777776666543

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=93.08  E-value=14  Score=39.46  Aligned_cols=26  Identities=19%  Similarity=0.325  Sum_probs=14.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHH
Q 005704          407 LLDKNRKMEHELTQLKVKLSEKTSLL  432 (682)
Q Consensus       407 Ll~kNrkL~~eLt~LR~~~~~l~~~l  432 (682)
                      +...-+.|.+++..||.++...+.+.
T Consensus       227 ~~shI~~Lr~EV~RLR~qL~~sq~e~  252 (310)
T PF09755_consen  227 LSSHIRSLRQEVSRLRQQLAASQQEH  252 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445566666666666665554443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.03  E-value=4.8  Score=43.45  Aligned_cols=46  Identities=24%  Similarity=0.406  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhc
Q 005704          336 NEIKKLNALLIEKEAALEDMKKELQARP--TSKMVDDLRKKVKILQAV  381 (682)
Q Consensus       336 ~~~~~L~~ql~~~~~~~~~le~~l~~~~--~~sDyeelK~EL~~Lk~i  381 (682)
                      ..|.....+..+....++++++.+....  +..|+..|+..++.|+..
T Consensus       239 ~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l  286 (312)
T smart00787      239 SKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL  286 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            3445555566677777788888776663  446799999999999985

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=92.86  E-value=13  Score=38.29  Aligned_cols=153  Identities=22%  Similarity=0.329  Sum_probs=75.9

Q ss_pred             hhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005704          110 QKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQ  189 (682)
Q Consensus       110 ~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E  189 (682)
                      ..+-.+-||.-.|+..+.      +.+.+..+++..+...-.....+..   .+..+.....+++.+.    ...+..-.
T Consensus        17 ~~~dk~EDp~~~l~Q~ir------d~~~~l~~ar~~~A~~~a~~k~~e~---~~~~~~~~~~k~e~~A----~~Al~~g~   83 (225)
T COG1842          17 ELLDKAEDPEKMLEQAIR------DMESELAKARQALAQAIARQKQLER---KLEEAQARAEKLEEKA----ELALQAGN   83 (225)
T ss_pred             HHHHhhcCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHCCC
Confidence            556668899977666444      3444666666555544333322211   2333333343443333    23333333


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhh-----HHHH---------HH
Q 005704          190 RGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAK-----QSEV---------NL  255 (682)
Q Consensus       190 ~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~-----~aEl---------e~  255 (682)
                      ..|-...-+++..++.....+...+..+...+..|+..+...+..+.+++++.+.-.+..     +.-|         .-
T Consensus        84 E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~s  163 (225)
T COG1842          84 EDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSS  163 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence            334444444445555555555555555555555555555555555555554443321111     0001         34


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 005704          256 LMDEVERAQTRLLSLQREKD  275 (682)
Q Consensus       256 l~~DLEra~~R~~~LE~e~E  275 (682)
                      .+.-+++.+.|+...|.+.+
T Consensus       164 a~~~fer~e~kiee~ea~a~  183 (225)
T COG1842         164 AMAAFERMEEKIEEREARAE  183 (225)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            55667777777777766643

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.63  E-value=4.4  Score=46.70  Aligned_cols=84  Identities=21%  Similarity=0.305  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH------HHhhHHHHHHHHHHHHHHHHHHH
Q 005704          195 ENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE------RVAKQSEVNLLMDEVERAQTRLL  268 (682)
Q Consensus       195 ~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee------~~a~~aEle~l~~DLEra~~R~~  268 (682)
                      .+.+...++......|+.++..++..+.+++..++....+|..++.....+      ..++..+++.|...|+....++.
T Consensus       419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve  498 (652)
T COG2433         419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE  498 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555555555555555555555555555555555444333211      22234444555555555555555


Q ss_pred             HHHHHHHHHH
Q 005704          269 SLQREKDLLR  278 (682)
Q Consensus       269 ~LE~e~E~Lr  278 (682)
                      .|+++.+.|+
T Consensus       499 ~L~~~l~~l~  508 (652)
T COG2433         499 ELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHH
Confidence            5555555554

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.39  E-value=25  Score=40.49  Aligned_cols=76  Identities=14%  Similarity=0.267  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h----hcchHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005704          196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEV--R----AQSDEERVAKQSEVNLLMDEVERAQTRLLS  269 (682)
Q Consensus       196 ~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l--~----~k~~ee~~a~~aEle~l~~DLEra~~R~~~  269 (682)
                      +.-+...|..+...+...++.-+.+++.|+...+..+..+.-.  .    .+...+.....-+|+++..++++..+.+-+
T Consensus       285 ~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~  364 (581)
T KOG0995|consen  285 MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE  364 (581)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444555555555544444444444444443333222211  0    112233444456677777777777666644


Q ss_pred             HH
Q 005704          270 LQ  271 (682)
Q Consensus       270 LE  271 (682)
                      ++
T Consensus       365 ~~  366 (581)
T KOG0995|consen  365 LK  366 (581)
T ss_pred             HH
Confidence            33

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=92.27  E-value=15  Score=38.50  Aligned_cols=131  Identities=16%  Similarity=0.187  Sum_probs=73.6

Q ss_pred             hhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          366 KMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK  445 (682)
Q Consensus       366 sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~e  445 (682)
                      .+|..||+|..-|-.+                     .+. |-.++.+|.++|.....++.-++..+......+..++++
T Consensus        60 ~e~s~LkREnq~l~e~---------------------c~~-lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqe  117 (307)
T PF10481_consen   60 NEYSALKRENQSLMES---------------------CEN-LEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQE  117 (307)
T ss_pred             hhhhhhhhhhhhHHHH---------------------HHH-HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577777777766532                     111 555778899999988888888888877777766666655


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 005704          446 INEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEE  525 (682)
Q Consensus       446 l~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~  525 (682)
                      +..       +..+|++.+....     ..+..+.. +++.    ..+-+          .|..-+| -.--.+..+|.+
T Consensus       118 lkr-------~KsELErsQ~~~~-----~~~~sl~~-~stp----qk~f~----------~p~tp~q-~~~~sk~e~L~e  169 (307)
T PF10481_consen  118 LKR-------CKSELERSQQAAS-----SGDVSLNP-CSTP----QKSFA----------TPLTPSQ-YYSDSKYEELQE  169 (307)
T ss_pred             HHH-------HHHHHHHHHHhhc-----cCCccccc-cCCc----hhhcc----------CCCChhh-hhhhhhHHHHHH
Confidence            544       4455555553321     00000000 0000    00000          0000111 112346677888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 005704          526 EVRQLKEKIGVLTAELEKTKA  546 (682)
Q Consensus       526 el~~~~~~i~~lr~Ei~~Lk~  546 (682)
                      ...+.-..-..|..|+..|+.
T Consensus       170 kynkeveerkrle~e~k~lq~  190 (307)
T PF10481_consen  170 KYNKEVEERKRLEAEVKALQA  190 (307)
T ss_pred             HHHHHHHHHhhHHHHHHHHhc
Confidence            887777777788888888886

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=92.13  E-value=17  Score=42.71  Aligned_cols=39  Identities=23%  Similarity=0.383  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 005704          339 KKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQ  379 (682)
Q Consensus       339 ~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk  379 (682)
                      ..|.++++..++.+..+...+.++  ..|.+.|..++..|+
T Consensus       219 n~L~~e~~s~kk~l~~~~~~k~rl--~~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  219 NRLEQELESVKKQLEEMRHDKDKL--RTDIEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHH
Confidence            334444445555555555555555  356777777777776

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=92.00  E-value=26  Score=39.90  Aligned_cols=197  Identities=16%  Similarity=0.268  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 005704          159 QQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF--  236 (682)
Q Consensus       159 q~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~--  236 (682)
                      ++..-+-++.++-+++..+-+.++..-.+ .+.......-...-+.++...|.+.+..+...+++|...+...+..+.  
T Consensus       299 R~~k~~~e~sk~eeL~~~L~~~lea~q~a-gkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~q  377 (531)
T PF15450_consen  299 RDAKEKLEESKAEELATKLQENLEAMQLA-GKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQ  377 (531)
T ss_pred             HHHHhHHHHhhHHHHHHHHHHHHHHHHHh-hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            33333444455555555554444431111 111111112222333444455555555555555555555444333332  


Q ss_pred             --HhhhcchHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhH
Q 005704          237 --EVRAQSDEERVAKQSEVNLLMDEVERA----QTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKE  310 (682)
Q Consensus       237 --~l~~k~~ee~~a~~aEle~l~~DLEra----~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke  310 (682)
                        .+..+.++-.......+--...++...    ...+.++...++.|-.++....+....-.+   +.+....++-.+.+
T Consensus       378 EqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ks---d~d~kIdtE~k~R~  454 (531)
T PF15450_consen  378 EQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKS---DSDTKIDTEGKARE  454 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---hhhhhccHHHHHHH
Confidence              222222222111111112222222222    223345555566666666655543221000   12224445566667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005704          311 KIISELNSELHNIETALSNEREQH-MNEIKKLNALLIEKEAALEDMKKELQA  361 (682)
Q Consensus       311 ~ei~~L~~e~~~Le~~L~~~r~~~-~~~~~~L~~ql~~~~~~~~~le~~l~~  361 (682)
                      .+|..+..+...+-.++.-.+... ...++.++..+.  ...+-.|+..++.
T Consensus       455 ~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l~--~~qi~kle~siq~  504 (531)
T PF15450_consen  455 REVGAVRQELATLLSSVQLLKEDNPGRKIAEIQGKLA--TNQIMKLENSIQT  504 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHH--HHHHHHHHHHHHH
Confidence            778888888888777766666543 335666666666  3345555554443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=91.97  E-value=49  Score=42.95  Aligned_cols=38  Identities=26%  Similarity=0.400  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (682)
Q Consensus       251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~  288 (682)
                      .+++....+++.++.++..++.+.+.|+.++..++++.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~  327 (1353)
T TIGR02680       290 DELETAREEERELDARTEALEREADALRTRLEALQGSP  327 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            45555666667777777778888888888887776554

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=91.95  E-value=31  Score=40.66  Aligned_cols=272  Identities=20%  Similarity=0.261  Sum_probs=137.9

Q ss_pred             hHHhhHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005704          135 LESENRKMKIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQ  213 (682)
Q Consensus       135 le~E~~kL~~el~~l~~el~~lknq~~-~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~q  213 (682)
                      ....+.+|+..+..|+.++.......+ --..|++|..+++-+.       +..  +.|..++...    .+...-++.+
T Consensus       329 h~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevER-------v~s--ktLQ~ELsrA----qea~~~lqqq  395 (739)
T PF07111_consen  329 HRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVER-------VGS--KTLQAELSRA----QEARRRLQQQ  395 (739)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------Hhh--HHHHHHHHHH----HHHHHHHHHH
Confidence            445667788888888888777543322 3455666655553322       110  1111222111    1222235556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc--C
Q 005704          214 LRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGS--R  291 (682)
Q Consensus       214 l~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~--~  291 (682)
                      ...++..++-+.......|.-|.           +..+.++-....|-....|+.-+-+++..++.-++....-...  .
T Consensus       396 ~~~aee~Lk~v~eav~S~q~~L~-----------s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe  464 (739)
T PF07111_consen  396 TASAEEQLKLVSEAVSSSQQWLE-----------SQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQE  464 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhc
Confidence            66666666666655554443221           1223445555556666677777777777888877654332110  0


Q ss_pred             CCC-CcCchhhhHhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 005704          292 NSD-TLDSNSYLENSLSAKEKIISELNSELHN----IETALSNEREQHMNEI-------KKLNALLIEKEAALEDMKKEL  359 (682)
Q Consensus       292 ~~~-~~~~~s~le~el~~ke~ei~~L~~e~~~----Le~~L~~~r~~~~~~~-------~~L~~ql~~~~~~~~~le~~l  359 (682)
                      ..+ ..-...++..++..+..+..+|.+++..    ++......|+....+.       ..|+..+......++.++..+
T Consensus       465 ~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL  544 (739)
T PF07111_consen  465 QCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQL  544 (739)
T ss_pred             cCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000 0112336777777777777777766552    2233334444444433       333333333333333333333


Q ss_pred             hcC-----CChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005704          360 QAR-----PTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLET  434 (682)
Q Consensus       360 ~~~-----~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~  434 (682)
                      ...     .+...-..+.+||.--+.+ |+.        + ......-+|+-|.++-..++..|...|..|....-.+.+
T Consensus       545 ~~Ar~~lqes~eea~~lR~EL~~QQ~~-y~~--------a-lqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ  614 (739)
T PF07111_consen  545 EAARKSLQESTEEAAELRRELTQQQEV-YER--------A-LQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQ  614 (739)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHH-HHH--------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322     0011233344444443322 110        0 001244678888888888888888888888877777776


Q ss_pred             HHHHHH
Q 005704          435 AEGKIA  440 (682)
Q Consensus       435 l~~~~~  440 (682)
                      ++....
T Consensus       615 ~qrqa~  620 (739)
T PF07111_consen  615 IQRQAA  620 (739)
T ss_pred             HHHHHH
Confidence            665443

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=91.75  E-value=24  Score=38.96  Aligned_cols=15  Identities=13%  Similarity=0.206  Sum_probs=9.9

Q ss_pred             HHHHhhhhhcChhhh
Q 005704          589 KYKKMYEDDINPFAA  603 (682)
Q Consensus       589 ~Y~~~YE~~L~Pf~~  603 (682)
                      .-+..|+-.|+||..
T Consensus       400 ~~~~~~~~~l~~~~~  414 (423)
T TIGR01843       400 GERTVIEYLLKPITD  414 (423)
T ss_pred             CCccHHHHHHHHHHH
Confidence            345677777778744

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=91.67  E-value=33  Score=40.37  Aligned_cols=138  Identities=20%  Similarity=0.299  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 005704          214 LRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNS  293 (682)
Q Consensus       214 l~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~  293 (682)
                      |.+++..+..|+.-.+.....+..+..+-+.-..-..+|+..+..-...-.......-.++..+|.++.           
T Consensus       389 L~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k-----------  457 (594)
T PF05667_consen  389 LPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIK-----------  457 (594)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH-----------
Confidence            444566666666666666666666655544444333444433332211111111222233333333332           


Q ss_pred             CCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q 005704          294 DTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRK  373 (682)
Q Consensus       294 ~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~  373 (682)
                             .++.++..|+..+.+|..++.++-....  |..+..-|-+.-   .+.+.+.+++.+    +  ..|.-.|.+
T Consensus       458 -------~~~~e~~~Kee~~~qL~~e~e~~~k~~~--Rs~Yt~RIlEIv---~NI~KQk~eI~K----I--l~DTr~lQk  519 (594)
T PF05667_consen  458 -------EIEEEIRQKEELYKQLVKELEKLPKDVN--RSAYTRRILEIV---KNIRKQKEEIEK----I--LSDTRELQK  519 (594)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH---HhHHHHHHHHHH----H--HHHHHHHHH
Confidence                   4455566666667777777766654422  444444443332   232222233222    2  345666666


Q ss_pred             HHHHHHh
Q 005704          374 KVKILQA  380 (682)
Q Consensus       374 EL~~Lk~  380 (682)
                      |+..|..
T Consensus       520 eiN~l~g  526 (594)
T PF05667_consen  520 EINSLTG  526 (594)
T ss_pred             HHHHHHH
Confidence            6666653

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=91.59  E-value=23  Score=38.32  Aligned_cols=83  Identities=17%  Similarity=0.268  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAK--QSEVNLLMDEVERAQTRLLSLQREKDLLRSQL  281 (682)
Q Consensus       204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~--~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL  281 (682)
                      .++.+.|...+..+..++.+++.-.......+...+.... ..++.  ..|-+.+...||+++.+...|++.+-.+-++.
T Consensus        78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~-~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEk  156 (319)
T PF09789_consen   78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE-GIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEK  156 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc-cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444443333333333322211 11111  26778899999999999999999999998888


Q ss_pred             Hhhhhh
Q 005704          282 QSANDE  287 (682)
Q Consensus       282 ~~a~s~  287 (682)
                      +++...
T Consensus       157 eEl~~E  162 (319)
T PF09789_consen  157 EELVTE  162 (319)
T ss_pred             HHHHHH
Confidence            766543

>PRK11281 hypothetical protein; Provisional

Probab=91.25  E-value=51  Score=41.71  Aligned_cols=22  Identities=9%  Similarity=0.208  Sum_probs=14.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHH
Q 005704          412 RKMEHELTQLKVKLSEKTSLLE  433 (682)
Q Consensus       412 rkL~~eLt~LR~~~~~l~~~l~  433 (682)
                      ++|.++++++|...-++.+..+
T Consensus       356 ~~l~~~iAdlrl~~f~~~q~~~  377 (1113)
T PRK11281        356 EGLADRIADLRLEQFEINQQRD  377 (1113)
T ss_pred             chHHHHHHHHHHHHHHHHHHHH
Confidence            4577777777776666654433

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=91.25  E-value=16  Score=38.10  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=16.9

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHH
Q 005704          405 SLLLDKNRKMEHELTQLKVKLSEKT  429 (682)
Q Consensus       405 ~lLl~kNrkL~~eLt~LR~~~~~l~  429 (682)
                      .-.++||++|+.+|..|+..+..+.
T Consensus       178 ~t~~EKnk~lq~QL~~L~~EL~~~k  202 (246)
T PF00769_consen  178 VTYAEKNKRLQEQLKELKSELEQLK  202 (246)
T ss_dssp             --HHHH-HHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            3467888888888888877766554

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=91.23  E-value=42  Score=40.68  Aligned_cols=61  Identities=13%  Similarity=0.066  Sum_probs=32.1

Q ss_pred             HHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhH
Q 005704           90 EVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ  160 (682)
Q Consensus        90 EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~  160 (682)
                      .+...+.++.....++..|       +|=.++|+.-+...   +++-.....+...+.++..-|..+-+.+
T Consensus       493 ~~~s~~~~s~eL~~avskI-------sEfv~~LekeVh~C---~DLLsgkadLE~fieE~s~tLdwIls~~  553 (769)
T PF05911_consen  493 ESKSMIEISQELNVAVSKI-------SEFVLVLEKEVHVC---QDLLSGKADLERFIEEFSLTLDWILSNC  553 (769)
T ss_pred             HHHHHHhhcccHHHHHHhH-------HHHHHHHHHHHHHH---HHHhcchhHHHHHHHHHHHHHHHHHHcc
Confidence            4555566777777777666       45556665544322   1233344444445555555444444443

The function of this family is unknown.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=91.17  E-value=36  Score=39.86  Aligned_cols=101  Identities=21%  Similarity=0.217  Sum_probs=52.8

Q ss_pred             CCCChHHHHHhhhhc---CChhHH-------------------HhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCc
Q 005704           16 SSSSPVSVISNFWKD---FDLEKE-------------------KSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASP   73 (682)
Q Consensus        16 ~~~~~~~~a~~~W~~---~dl~~l-------------------q~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~   73 (682)
                      -+...|...=+.|.+   ..|+.+                   ++.++..-..|.....+-..-+..|.+...     ..
T Consensus        61 es~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~-----~e  135 (569)
T PRK04778         61 QSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLE-----SE  135 (569)
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence            345567777777755   233333                   333444444444444433333333333322     33


Q ss_pred             HHHHHhhHHHHHHhHH-HHHHHhhhhhhhHHH------------HHHHhhhhccCCCCHHH
Q 005704           74 EEKLSLFNSLLKGYQE-EVDNLTKRAKFGENA------------FLNIYQKLYEAPDPYPA  121 (682)
Q Consensus        74 eekl~~~~~LLK~yQ~-EID~LTkRsK~aE~a------------Fl~~Y~~L~eaPDP~Pl  121 (682)
                      ++-+..|..|.+-|+. -=+-|++|.+++.+.            =|+-|..|.+..||.-+
T Consensus       136 ~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A  196 (569)
T PRK04778        136 EKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEA  196 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            4556677777777766 233345555554432            24667778888888654

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=91.01  E-value=49  Score=41.08  Aligned_cols=27  Identities=19%  Similarity=0.095  Sum_probs=15.3

Q ss_pred             ChhhhhhHhHHHHHhhhcCcchhHHHhh
Q 005704          599 NPFAAFSKKERDQRYKELGIRDRITLSS  626 (682)
Q Consensus       599 ~Pf~~F~~~E~~r~~~~l~~~er~~l~~  626 (682)
                      .+|.-+.+.+ -|.+..||-.|++.+++
T Consensus       800 ~~~~~~~~~~-~r~~~~LSGGE~~~~sL  826 (908)
T COG0419         800 LVVVVYDGGE-VRPIKTLSGGERFLASL  826 (908)
T ss_pred             eEEEEecCCC-ccccccCCchHHHHHHH
Confidence            3444444444 45566777777775443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=90.97  E-value=26  Score=37.87  Aligned_cols=220  Identities=21%  Similarity=0.242  Sum_probs=110.8

Q ss_pred             HHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHH-HHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhH
Q 005704           82 SLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPAL-ASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ  160 (682)
Q Consensus        82 ~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlL-e~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~  160 (682)
                      |+|-.||-=.--|.++=..+=..|-++=.....-|-|  ++ ++... .       ++.+.   .   +...|.-+|   
T Consensus        63 P~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPp--LF~EY~~a-~-------~d~r~---l---m~~Qf~lvK---  123 (312)
T smart00787       63 PLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPP--LFKEYFSA-S-------PDVKL---L---MDKQFQLVK---  123 (312)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH--HHHHHHcC-C-------HHHHH---H---HHHHHHHHH---
Confidence            7899999988888888877777777777766644433  33 32110 0       01100   0   011111111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          161 STIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA  240 (682)
Q Consensus       161 ~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~  240 (682)
                       ++-+|..+--=++=.+         ..-..+...+++....+......|.++++.+..-+-.+...+...+.++..++.
T Consensus       124 -~~aRl~ak~~WYeWR~---------kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~  193 (312)
T smart00787      124 -TFARLEAKKMWYEWRM---------KLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQ  193 (312)
T ss_pred             -HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2223332211111000         011222333444444445555556666666666666666666666666666655


Q ss_pred             cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHH
Q 005704          241 QSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSEL  320 (682)
Q Consensus       241 k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~  320 (682)
                      ..++-..--.+|+..+...|......+...-...+.++.+|....+..                  .....++.++.+++
T Consensus       194 ~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I------------------~~~~~~k~e~~~~I  255 (312)
T smart00787      194 LEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKI------------------EDLTNKKSELNTEI  255 (312)
T ss_pred             hHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
Confidence            444333333455555555555544444444444555555544333332                  22334466677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          321 HNIETALSNEREQHMNEIKKLNALLIEK  348 (682)
Q Consensus       321 ~~Le~~L~~~r~~~~~~~~~L~~ql~~~  348 (682)
                      ..++..+..-|.-...++..|...+..+
T Consensus       256 ~~ae~~~~~~r~~t~~Ei~~Lk~~~~~L  283 (312)
T smart00787      256 AEAEKKLEQCRGFTFKEIEKLKEQLKLL  283 (312)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            7666665555555566666666555443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=90.85  E-value=43  Score=40.16  Aligned_cols=54  Identities=20%  Similarity=0.220  Sum_probs=29.4

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG  463 (682)
Q Consensus       407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~  463 (682)
                      |..|-+....++..++..+..+..++..++....   .+....+..+..|...+...
T Consensus       357 Le~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~---~ek~~~~~e~q~L~ekl~~l  410 (717)
T PF09730_consen  357 LECKYKVAVSEVIQLKAELKALKSKYNELEERYK---QEKDRLESEVQNLKEKLMSL  410 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            5666666666777776666666666666655222   22333344444444444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF13514 AAA_27: AAA domain

Probab=90.83  E-value=57  Score=41.50  Aligned_cols=40  Identities=28%  Similarity=0.387  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (682)
Q Consensus       507 ~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~  546 (682)
                      +.+....+....++..|+.++......+..++.++..|..
T Consensus       892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~  931 (1111)
T PF13514_consen  892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEG  931 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4455666666666666777776666666666666666654

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=90.79  E-value=24  Score=37.04  Aligned_cols=41  Identities=17%  Similarity=0.325  Sum_probs=27.6

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          408 LDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE  448 (682)
Q Consensus       408 l~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~  448 (682)
                      +-.|..+..++...|..+++++..+..|..++..+.....+
T Consensus       185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~  225 (258)
T PF15397_consen  185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQD  225 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            36677787888777777777777766666666555555443

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=90.43  E-value=52  Score=40.43  Aligned_cols=88  Identities=15%  Similarity=0.129  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          202 ILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEER---VAKQSEVNLLMDEVERAQTRLLSLQREKDLLR  278 (682)
Q Consensus       202 ~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~---~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr  278 (682)
                      .+.+..+-+.+..++++....++.+.+...+..+.....+.-+-.   -...+++++...++|..+.+....+++++..+
T Consensus       266 ~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~  345 (1072)
T KOG0979|consen  266 KLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAK  345 (1072)
T ss_pred             HHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445666777777888888888888888877666543322   22367889999999999999999999999999


Q ss_pred             HHHHhhhhhhc
Q 005704          279 SQLQSANDEAG  289 (682)
Q Consensus       279 ~eL~~a~s~~~  289 (682)
                      ..+..++...+
T Consensus       346 k~i~~~q~el~  356 (1072)
T KOG0979|consen  346 KMILDAQAELQ  356 (1072)
T ss_pred             HHHHHHHhhhh
Confidence            99888877654

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=90.39  E-value=33  Score=38.11  Aligned_cols=55  Identities=15%  Similarity=0.221  Sum_probs=42.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704          411 NRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (682)
Q Consensus       411 NrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~  465 (682)
                      -.++...|..+|.++...+.........+.....+......++..|=..|.+++-
T Consensus       334 ~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~  388 (502)
T KOG0982|consen  334 DQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRR  388 (502)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777777777777777777777888888888888888888888874

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=90.29  E-value=25  Score=36.43  Aligned_cols=70  Identities=19%  Similarity=0.200  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHH
Q 005704          193 AEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVER  262 (682)
Q Consensus       193 ~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEr  262 (682)
                      +.++.+.+.--.+=++.|..+|.+++..+++|.+.......++..++.+.+.........+.-|..|+-.
T Consensus        33 reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsq  102 (333)
T KOG1853|consen   33 REELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQ  102 (333)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555556677788889999999999988888777777777777665544444444555555433

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=90.21  E-value=3  Score=35.24  Aligned_cols=69  Identities=29%  Similarity=0.411  Sum_probs=49.6

Q ss_pred             hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 005704          301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKV  375 (682)
Q Consensus       301 ~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL  375 (682)
                      +++..+..++.+|.+|..|-..|..+    .-.+...|..|..++......+..+...++..  ..+++.++..+
T Consensus         2 sl~~~l~EKDe~Ia~L~eEGekLSk~----el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~--e~~~~~l~~~l   70 (74)
T PF12329_consen    2 SLEKKLAEKDEQIAQLMEEGEKLSKK----ELKLNNTIKKLRAKIKELEKQIKELKKKLEEL--EKELESLEERL   70 (74)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
Confidence            45566889999999999999887765    44567777888887777777777777666654  34455555443

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=90.12  E-value=22  Score=37.07  Aligned_cols=50  Identities=18%  Similarity=0.312  Sum_probs=20.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704          414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG  463 (682)
Q Consensus       414 L~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~  463 (682)
                      |..++..+...+..+......-..+...+..++...+....+--..|..+
T Consensus        80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~  129 (246)
T PF00769_consen   80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEV  129 (246)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444445555444444444444444333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=89.85  E-value=40  Score=38.25  Aligned_cols=103  Identities=14%  Similarity=0.094  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          255 LLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQH  334 (682)
Q Consensus       255 ~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~  334 (682)
                      .+..++..++.++..++.+...|+.++.........-.. ....  .....+.....+...+..++...+..+...+...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~~~~~~~f~~-~~~~--~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~  170 (457)
T TIGR01000        94 NEENQKQLLEQQLDNLKDQKKSLDTLKQSIENGRNQFPT-DDSF--GYRNLFNGYLAQVESLTSETQQQNDKSQTQNEAA  170 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC-Ccch--hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            345566667777778888888887776543221110000 0000  0111122222233444444444444444444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704          335 MNEIKKLNALLIEKEAALEDMKKELQ  360 (682)
Q Consensus       335 ~~~~~~L~~ql~~~~~~~~~le~~l~  360 (682)
                      ..+++.+..++..+...+..++..+.
T Consensus       171 ~~~~~~~~~~i~~~~~~~~~~~~~~~  196 (457)
T TIGR01000       171 EKTKAQLDQQISKTDQKLQDYQALKN  196 (457)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555554444

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=89.68  E-value=31  Score=37.77  Aligned_cols=50  Identities=36%  Similarity=0.428  Sum_probs=21.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL  461 (682)
Q Consensus       412 rkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~  461 (682)
                      ..++.++...+..+...+..+..++..+..+..+++.......+|+.++.
T Consensus       224 ~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~  273 (344)
T PF12777_consen  224 EEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIE  273 (344)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444444433

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=89.63  E-value=50  Score=39.01  Aligned_cols=51  Identities=10%  Similarity=0.057  Sum_probs=23.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704          413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG  463 (682)
Q Consensus       413 kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~  463 (682)
                      .+....+.+..++.++...+.........+..++....+.-.+++.=+..+
T Consensus       395 ~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~  445 (716)
T KOG4593|consen  395 RRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKV  445 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            333444555555555555555444444444444444444444444333333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.42  E-value=31  Score=41.55  Aligned_cols=79  Identities=14%  Similarity=0.220  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          200 LEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE-RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLR  278 (682)
Q Consensus       200 ~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee-~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr  278 (682)
                      .+.|......+.+++..+...++.++..++.-+..+. .+...... ..--..+.+.+..-|-.-...+.++-.++..++
T Consensus       634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~  712 (717)
T PF10168_consen  634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE-SQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIK  712 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556565666666666666666666666655444333 11110000 111234455555544444444555544444444


Q ss_pred             H
Q 005704          279 S  279 (682)
Q Consensus       279 ~  279 (682)
                      .
T Consensus       713 ~  713 (717)
T PF10168_consen  713 K  713 (717)
T ss_pred             H
Confidence            3

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=89.30  E-value=53  Score=38.88  Aligned_cols=35  Identities=23%  Similarity=0.291  Sum_probs=28.2

Q ss_pred             CchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005704          297 DSNSYLENSLSAKEKIISELNSELHNIETALSNER  331 (682)
Q Consensus       297 ~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r  331 (682)
                      +.+.++|.+|..++..+.++++-+..|+..|+-..
T Consensus        91 d~ndklE~~Lankda~lrq~eekn~slqerLelaE  125 (916)
T KOG0249|consen   91 DLNDKLENELANKDADLRQNEEKNRSLQERLELAE  125 (916)
T ss_pred             cchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhh
Confidence            56779999999999999999888888887765433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=89.14  E-value=52  Score=38.54  Aligned_cols=128  Identities=14%  Similarity=0.213  Sum_probs=78.2

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccc
Q 005704          403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEA  482 (682)
Q Consensus       403 LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~  482 (682)
                      +=+.+.+.=+.+...|+.+...+.++...+..+.++-......+..++..+...-..+.+.+=         |       
T Consensus       373 ~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL---------P-------  436 (560)
T PF06160_consen  373 PYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL---------P-------  436 (560)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------C-------
Confidence            345577777778888888888888888888888887777777777777777776666655431         1       


Q ss_pred             ccccc-ccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 005704          483 GGTEL-SEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI  555 (682)
Q Consensus       483 ~~~~~-~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEki  555 (682)
                      |+++- ....        ...+..+.-|..+.++.+.-+..+...+......+..|...+..+- ||..|-|++
T Consensus       437 Glp~~y~~~~--------~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li-~~A~L~E~~  501 (560)
T PF06160_consen  437 GLPEDYLDYF--------FDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELI-DNATLAEQL  501 (560)
T ss_pred             CCCHHHHHHH--------HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            11100 0000        0233345555555555555666666666666666666666666554 356665553

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=89.09  E-value=32  Score=36.07  Aligned_cols=54  Identities=13%  Similarity=0.189  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHH
Q 005704          210 LQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERA  263 (682)
Q Consensus       210 L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra  263 (682)
                      ....+..++.++..|.+.+..++.+|.-|.+=-|.+=-.++=.|..|...|+..
T Consensus        79 ~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~l  132 (258)
T PF15397_consen   79 EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQL  132 (258)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            445667777777788888888888888887765656445555666666666554

>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []

Probab=88.84  E-value=27  Score=36.11  Aligned_cols=79  Identities=28%  Similarity=0.426  Sum_probs=48.1

Q ss_pred             hHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhh-hhHHhhHHHHHHHHHHHHHHHHhhhh-HH-HH
Q 005704           87 YQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLS-ELESENRKMKIELEEYRTEATHLKNQ-QS-TI  163 (682)
Q Consensus        87 yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~-~le~E~~kL~~el~~l~~el~~lknq-~~-~~  163 (682)
                      -|.|||.+-|+-...=..|=.+|.++..+.-|.        +-.++. +|..|+.||+    +++..+..|-+- ++ +-
T Consensus         6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~--------QKEK~E~DLKkEIKKLQ----R~RdQIK~W~~~~diKdk   73 (233)
T PF04065_consen    6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATNQN--------QKEKLEADLKKEIKKLQ----RLRDQIKTWLSSNDIKDK   73 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcc--------hHHHHHHHHHHHHHHHH----HHHHHHHHHccCcccccH
Confidence            489999999999999999999999999865332        112221 4556666654    344445455432 11 33


Q ss_pred             HHHHHHHHHHHHHH
Q 005704          164 RRLEERNRQLEQQM  177 (682)
Q Consensus       164 ~~Lkerl~~lE~~~  177 (682)
                      ..|.+--+..|..|
T Consensus        74 ~~L~e~Rk~IE~~M   87 (233)
T PF04065_consen   74 KKLLENRKLIEEQM   87 (233)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444333344444

This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=88.82  E-value=36  Score=36.30  Aligned_cols=33  Identities=12%  Similarity=0.287  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          199 TLEILQEREQALQDQLRQAKDSVATMQKLHELA  231 (682)
Q Consensus       199 k~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~  231 (682)
                      ..+.|.++-..|..++.+...++.+++...+..
T Consensus        35 ~~~~~~ekRdeln~kvrE~~e~~~elr~~rdei   67 (294)
T COG1340          35 EASELAEKRDELNAKVRELREKAQELREERDEI   67 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555555544433

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=88.63  E-value=42  Score=36.87  Aligned_cols=62  Identities=18%  Similarity=0.209  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          213 QLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (682)
Q Consensus       213 ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~  285 (682)
                      ++++...+|..+++.++..+.+....           ..|-+.+..+|+.+++.-..++.+..+++..+.++.
T Consensus        75 qlddi~~qlr~~rtel~~a~~~k~~~-----------e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAq  136 (499)
T COG4372          75 QLDDIRPQLRALRTELGTAQGEKRAA-----------ETEREAARSELQKARQEREAVRQELAAARQNLAKAQ  136 (499)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555544332222           223344444555555444555555555555554443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=88.59  E-value=61  Score=38.65  Aligned_cols=49  Identities=24%  Similarity=0.210  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhh
Q 005704          505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD  560 (682)
Q Consensus       505 iL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqs  560 (682)
                      -+.-..++..++.....+++.++.........++.|+..|+.       |.+++.+
T Consensus       574 ~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~-------kle~~k~  622 (698)
T KOG0978|consen  574 ELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKR-------KLERLKK  622 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcc
Confidence            445556777777778888888888888888888888888887       8777644

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=88.58  E-value=62  Score=38.74  Aligned_cols=39  Identities=23%  Similarity=0.232  Sum_probs=21.8

Q ss_pred             CHHHHHHHHHHHhhhhhhH------HhhHHHHHHHHHHHHHHHHhhh
Q 005704          118 PYPALASIAEQDLKLSELE------SENRKMKIELEEYRTEATHLKN  158 (682)
Q Consensus       118 P~PlLe~s~~~~~~~~~le------~E~~kL~~el~~l~~el~~lkn  158 (682)
                      |-|.|.-.++.+.+  ++.      .....|+..+.-|+.||++.+.
T Consensus       456 ~~~~L~e~IeKLk~--E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~  500 (762)
T PLN03229        456 SELALNEMIEKLKK--EIDLEYTEAVIAMGLQERLENLREEFSKANS  500 (762)
T ss_pred             CChHHHHHHHHHHH--HHHHHHHHhhhhhhHHHHHHHHHHHHHhccc
Confidence            56777666654332  111      1224566777777777777654

>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6

Probab=88.47  E-value=10  Score=42.63  Aligned_cols=222  Identities=14%  Similarity=0.188  Sum_probs=49.6

Q ss_pred             HHHhhHHHHHHhHHHHHHHhhhh-hhhHHHHHHHhhh---hccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHH
Q 005704           76 KLSLFNSLLKGYQEEVDNLTKRA-KFGENAFLNIYQK---LYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRT  151 (682)
Q Consensus        76 kl~~~~~LLK~yQ~EID~LTkRs-K~aE~aFl~~Y~~---L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~  151 (682)
                      -...+...++..+.+||.....- ...-....++.+.   ..-+|.|.+..............--.|+..|+.++.-++.
T Consensus        86 ~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ev~~LRreLavLRQ  165 (424)
T PF03915_consen   86 GIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTSKSDLKEVQSLRRELAVLRQ  165 (424)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCcCCCCcchHHHHHHHHHHHHHHHH
Confidence            45555556666666666665554 3333333343333   2334443332222111110000112255555555555544


Q ss_pred             HHHHhhhhH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          152 EATHLKNQQ-STIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHEL  230 (682)
Q Consensus       152 el~~lknq~-~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~  230 (682)
                      -....+..- .++..+++++..+....       +...-..-++-++.-+.++...-..|-.++.+++..+++|+.-.  
T Consensus       166 l~~~~~~~~~~~i~~i~~ki~~~k~~s-------~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV--  236 (424)
T PF03915_consen  166 LYSEFQSEVKESISSIREKIKKVKSAS-------TNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDV--  236 (424)
T ss_dssp             -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            333333221 25566666554443211       11111112233333334444444444444444444444444321  


Q ss_pred             HHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhhhhhccCCCCCcCchhhh
Q 005704          231 AQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLR--------SQLQSANDEAGSRNSDTLDSNSYL  302 (682)
Q Consensus       231 ~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr--------~eL~~a~s~~~~~~~~~~~~~s~l  302 (682)
                           -.-+++.      .-..++-+..|+.++...+..++..+..++        .||...-..-            ..
T Consensus       237 -----~~RgvRp------~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQ------------qf  293 (424)
T PF03915_consen  237 -----VQRGVRP------SPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQ------------QF  293 (424)
T ss_dssp             -----HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred             -----HHcCCcC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH------------HH
Confidence                 1112221      123455555566665555555555544433        2333221111            11


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          303 ENSLSAKEKIISELNSELHNIETALSNERE  332 (682)
Q Consensus       303 e~el~~ke~ei~~L~~e~~~Le~~L~~~r~  332 (682)
                         +.--+.-+.+|.+++..+...+.....
T Consensus       294 ---L~~QedL~~DL~eDl~k~~etf~lveq  320 (424)
T PF03915_consen  294 ---LKLQEDLLSDLKEDLKKASETFALVEQ  320 (424)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               222233477777777777777765544

In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=88.46  E-value=74  Score=39.44  Aligned_cols=63  Identities=17%  Similarity=0.249  Sum_probs=49.4

Q ss_pred             chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704          401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (682)
Q Consensus       401 ~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~  464 (682)
                      .+|+. +.+++..++..+..++.++..+..+...+...+..+...++++......|+.+.....
T Consensus       395 ~~ld~-~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~  457 (1141)
T KOG0018|consen  395 DTLDH-ELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAE  457 (1141)
T ss_pred             HHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhh
Confidence            35555 6778888888888888888888888888888888888888888888888877765544

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=88.13  E-value=50  Score=37.15  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=20.1

Q ss_pred             CCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhh
Q 005704          115 APDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLK  157 (682)
Q Consensus       115 aPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lk  157 (682)
                      .||+--.+|...-.-.-+ .|..-+.+|+.++.+.+..+.+|.
T Consensus       296 ~~d~eqs~Eslqpleedm-aLNEvL~kLk~tn~kQq~~IqdLq  337 (527)
T PF15066_consen  296 TPDTEQSFESLQPLEEDM-ALNEVLQKLKHTNRKQQNRIQDLQ  337 (527)
T ss_pred             CCCHHhhhhccCCcHHHH-HHHHHHHHHHhhhHHHHHHHHHhh
Confidence            677655554422111000 244455666666665555555544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.08  E-value=69  Score=38.68  Aligned_cols=81  Identities=21%  Similarity=0.289  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          200 LEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRS  279 (682)
Q Consensus       200 ~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~  279 (682)
                      +..+.++...|+++++.+..+-+.|..+.+..=..+   ..+...   -..||.+| ..+|++.+.++..+..++++++.
T Consensus       588 ~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l---~~~~P~---LS~AEr~~-~~EL~~~~~~l~~l~~si~~lk~  660 (717)
T PF10168_consen  588 RKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL---NSQLPV---LSEAEREF-KKELERMKDQLQDLKASIEQLKK  660 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCC---CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555555555555555544444221111   111110   11233222 23355555555556666666666


Q ss_pred             HHHhhhhh
Q 005704          280 QLQSANDE  287 (682)
Q Consensus       280 eL~~a~s~  287 (682)
                      .++.....
T Consensus       661 k~~~Q~~~  668 (717)
T PF10168_consen  661 KLDYQQRQ  668 (717)
T ss_pred             HHHHHHHH
Confidence            65554433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=87.94  E-value=21  Score=35.23  Aligned_cols=55  Identities=24%  Similarity=0.372  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhh
Q 005704          506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD  560 (682)
Q Consensus       506 L~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqs  560 (682)
                      +.-+......+..+..++...+......+..++.++..++.+.-.|-+++..+++
T Consensus       132 l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  186 (191)
T PF04156_consen  132 LDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE  186 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555666666666666677777777777777766666667766554

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=87.54  E-value=39  Score=35.15  Aligned_cols=92  Identities=17%  Similarity=0.313  Sum_probs=52.3

Q ss_pred             HHHHHhhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccc
Q 005704          406 LLLDKNRKMEHELTQLKVKL-----SEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLS  480 (682)
Q Consensus       406 lLl~kNrkL~~eLt~LR~~~-----~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~  480 (682)
                      -|++|-|-|..++..|-.+.     ..|..++..-...-..+...-+++-.-+..|-+|++                   
T Consensus       214 ~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVE-------------------  274 (330)
T KOG2991|consen  214 MLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVE-------------------  274 (330)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHh-------------------
Confidence            58999999999888886543     233333333333333333333333333444444433                   


Q ss_pred             cccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGV  536 (682)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~  536 (682)
                                          +.++-+-|+..+...-|.+|..|+..+.++.+-+..
T Consensus       275 --------------------gmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d  310 (330)
T KOG2991|consen  275 --------------------GMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGD  310 (330)
T ss_pred             --------------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                                333445677777777777777777776666655443

>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

Probab=87.45  E-value=21  Score=41.11  Aligned_cols=59  Identities=31%  Similarity=0.446  Sum_probs=41.1

Q ss_pred             hHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhh-hhHHhhHHHHHHHHHHHHHHHHhh
Q 005704           87 YQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLS-ELESENRKMKIELEEYRTEATHLK  157 (682)
Q Consensus        87 yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~-~le~E~~kL~~el~~l~~el~~lk  157 (682)
                      -|+|||.+-|.-+..=-.|=++|.++.++--|        .+..|++ +|..|++||+    +|+..+..|.
T Consensus         6 Lq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~--------sqkeK~e~DLKkEIKKLQ----RlRdQIKtW~   65 (575)
T KOG2150|consen    6 LQQEIDRCLKKVDEGVEIFDEIYEKLHSANNV--------SQKEKLESDLKKEIKKLQ----RLRDQIKTWQ   65 (575)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHHHHHHHH----HHHHHHHhhh
Confidence            48999999999999999999999999987622        2233332 4666666654    3445555554

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=87.09  E-value=21  Score=34.03  Aligned_cols=81  Identities=21%  Similarity=0.320  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 005704          249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS  328 (682)
Q Consensus       249 ~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~  328 (682)
                      ..++++-+..++++.+.+++.+++++..+......+...                  +...........+++.++...+.
T Consensus        64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~------------------~~~~~~~~k~~kee~~klk~~~~  125 (151)
T PF11559_consen   64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ------------------LKSLEAKLKQEKEELQKLKNQLQ  125 (151)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666666666666666665555554433322                  33333445666677777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 005704          329 NEREQHMNEIKKLNALLIE  347 (682)
Q Consensus       329 ~~r~~~~~~~~~L~~ql~~  347 (682)
                      ..+.++..++.+-+.++..
T Consensus       126 ~~~tq~~~e~rkke~E~~k  144 (151)
T PF11559_consen  126 QRKTQYEHELRKKEREIEK  144 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7777777666554443333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.83  E-value=80  Score=38.04  Aligned_cols=30  Identities=27%  Similarity=0.242  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          517 RARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (682)
Q Consensus       517 r~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~  546 (682)
                      ++.+.++--.+..+.+.+.+|+.-+..|..
T Consensus       910 kqeqee~~v~~~~~~~~i~alk~~l~dL~q  939 (970)
T KOG0946|consen  910 KQEQEELLVLLADQKEKIQALKEALEDLNQ  939 (970)
T ss_pred             hhhHHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence            456666667777777777777776666665

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=86.82  E-value=32  Score=33.48  Aligned_cols=121  Identities=21%  Similarity=0.326  Sum_probs=60.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005704          137 SENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQL-------EQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQA  209 (682)
Q Consensus       137 ~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~l-------E~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~  209 (682)
                      .|...++.++.+++.++..+-   ..+++|+.+.+..       .+.+..-.+..+.+.-.+. ..++-+...+.++++.
T Consensus        27 ~E~~~l~~EL~evk~~v~~~I---~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A-~~lQ~~L~~~re~E~q  102 (159)
T PF05384_consen   27 QEYERLRKELEEVKEEVSEVI---EEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEA-HELQVRLAMLREREKQ  102 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            355555555555555555532   1344444443333       3333222222222111111 1233444556777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          210 LQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQR  272 (682)
Q Consensus       210 L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~  272 (682)
                      |..+-.++++.++.|...++.++.-..           ...-=++-|..||......+.+++.
T Consensus       103 Lr~rRD~LErrl~~l~~tierAE~l~s-----------qi~vvl~yL~~dl~~v~~~~e~~~~  154 (159)
T PF05384_consen  103 LRERRDELERRLRNLEETIERAENLVS-----------QIGVVLNYLSGDLQQVSEQIEDAQQ  154 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            777777777777777777775542222           2223345566666655555555443

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.77  E-value=4.8  Score=40.27  Aligned_cols=109  Identities=19%  Similarity=0.265  Sum_probs=37.0

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccc
Q 005704          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTE  486 (682)
Q Consensus       407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (682)
                      +-.+--+++.||+.+.....++..++..+...+..+..++......+..|+..+..+....                   
T Consensus        72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~-------------------  132 (194)
T PF08614_consen   72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKI-------------------  132 (194)
T ss_dssp             ------------------------------------------HHHHHHHHHHHHHHHHHHH-------------------
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            3344456788888888888888888888887777777777777777777776666554321                   


Q ss_pred             cccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHH
Q 005704          487 LSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGK  554 (682)
Q Consensus       487 ~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEk  554 (682)
                                          .-+.........-|.-|-+|+..++-+.+.+...+..|+.+|-.|-++
T Consensus       133 --------------------~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R  180 (194)
T PF08614_consen  133 --------------------KDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER  180 (194)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                111222223344445555555555556666666666667777777664

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=86.43  E-value=28  Score=39.49  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=64.2

Q ss_pred             hHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005704          135 LESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQL  214 (682)
Q Consensus       135 le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql  214 (682)
                      +..++..+..++..+..+..+|.+|.++   ++.+++-+.-+.+                .+++-.-.+..+...++..+
T Consensus       217 ~~eel~~kt~el~~q~Ee~skLlsql~d---~qkk~k~~~~Eke----------------el~~~Lq~~~da~~ql~aE~  277 (596)
T KOG4360|consen  217 GQEELQSKTKELSRQQEENSKLLSQLVD---LQKKIKYLRHEKE----------------ELDEHLQAYKDAQRQLTAEL  277 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHH----------------HHHHHHHHHHhhHHHHHHHH
Confidence            3445566666666667777777666665   3333332211111                12222223344555555566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          215 RQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNL-LMDEVERAQTRLLSLQREKDLLRSQL  281 (682)
Q Consensus       215 ~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~-l~~DLEra~~R~~~LE~e~E~Lr~eL  281 (682)
                      .+++.+-.+.-.-+..+|.+|..++....-......+-.-. .=.-+..+..++.-.++.+-+|+++.
T Consensus       278 ~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~~~fp~~~~aae~i~lt~r~~~qldee~  345 (596)
T KOG4360|consen  278 EELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALSHGHHFPQLSLAAEKIELTMRKNLQLDEEA  345 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhhhhCChhhHHHHHHHHhhhhhhcccccc
Confidence            66666666666666667777777766543221111111000 11223445555666677777776653

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=86.14  E-value=51  Score=35.17  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA  284 (682)
Q Consensus       251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a  284 (682)
                      .++..+.......+.++..|-.....|++.....
T Consensus        69 eev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~  102 (294)
T COG1340          69 EEVQELKEKRDEINAKLQELRKEYRELKEKRNEF  102 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3444444444444555555555555555554433

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.82  E-value=12  Score=43.38  Aligned_cols=97  Identities=19%  Similarity=0.260  Sum_probs=73.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccccccccccc
Q 005704          414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADK  493 (682)
Q Consensus       414 L~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (682)
                      ..-+++.....+..+...++.++.+.+.|..++.+++..|.+|++.|..+.....                         
T Consensus       413 e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-------------------------  467 (652)
T COG2433         413 ERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-------------------------  467 (652)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence            4456688888888899999999999999999999999999999999998875321                         


Q ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          494 KHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (682)
Q Consensus       494 ~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~  546 (682)
                             ..   . -+.....-...+|..|+.+|......+..|..+++.|+.
T Consensus       468 -------~~---~-~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k  509 (652)
T COG2433         468 -------DK---V-RKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK  509 (652)
T ss_pred             -------HH---H-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   00   0 001111224567888999999999999999998888885

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.38  E-value=8.5  Score=39.06  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          260 VERAQTRLLSLQREKDLLRSQLQSAN  285 (682)
Q Consensus       260 LEra~~R~~~LE~e~E~Lr~eL~~a~  285 (682)
                      +....+.+.+|+.+|.+|+.+|+.++
T Consensus       127 ~~~~~~~~~~L~~~n~~L~~~l~~~~  152 (206)
T PRK10884        127 VAQSDSVINGLKEENQKLKNQLIVAQ  152 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445556666666666555433

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.68  E-value=13  Score=37.78  Aligned_cols=14  Identities=36%  Similarity=0.437  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHH
Q 005704          164 RRLEERNRQLEQQM  177 (682)
Q Consensus       164 ~~Lkerl~~lE~~~  177 (682)
                      ..+..++.+++++.
T Consensus        89 p~~~~rlp~le~el  102 (206)
T PRK10884         89 PSLRTRVPDLENQV  102 (206)
T ss_pred             ccHHHHHHHHHHHH
Confidence            44666666666665

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.42  E-value=28  Score=35.94  Aligned_cols=97  Identities=18%  Similarity=0.235  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          263 AQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLN  342 (682)
Q Consensus       263 a~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~  342 (682)
                      ++.++.++++-...|..+++......            ..   +..+..++..|..|...+...|...    ...|..|+
T Consensus         6 ir~K~~~lek~k~~i~~e~~~~e~ee------------~~---L~e~~kE~~~L~~Er~~h~eeLrqI----~~DIn~lE   66 (230)
T PF10146_consen    6 IRNKTLELEKLKNEILQEVESLENEE------------KC---LEEYRKEMEELLQERMAHVEELRQI----NQDINTLE   66 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------------HH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence            34455556655555555555433332            22   5555666777777776666554332    23345566


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 005704          343 ALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA  380 (682)
Q Consensus       343 ~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~  380 (682)
                      ..+.+........+.....+  +.+|.-+|.+++.++.
T Consensus        67 ~iIkqa~~er~~~~~~i~r~--~eey~~Lk~~in~~R~  102 (230)
T PF10146_consen   67 NIIKQAESERNKRQEKIQRL--YEEYKPLKDEINELRK  102 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            66666666666666666666  6789999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=84.12  E-value=78  Score=35.53  Aligned_cols=57  Identities=19%  Similarity=0.232  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          216 QAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQ  280 (682)
Q Consensus       216 ~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~e  280 (682)
                      .+......|...++..+.++..+        .....++..|..|++.++.-...+-.+.++.+-+
T Consensus       315 ~~~~~~~~l~~~l~~~~~~~~~l--------~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~  371 (444)
T TIGR03017       315 ILKQREAELREALENQKAKVLEL--------NRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRIE  371 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555544443333322        2235678888999988888888887777777644

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=83.53  E-value=83  Score=35.41  Aligned_cols=153  Identities=16%  Similarity=0.190  Sum_probs=86.7

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--------hHH-HHhhHHHHHHHHH
Q 005704          188 KQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS--------DEE-RVAKQSEVNLLMD  258 (682)
Q Consensus       188 ~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~--------~ee-~~a~~aEle~l~~  258 (682)
                      .|+.+..++++.....-.=..-+-++-.+++.+--+|-+.+...+.-+.+.+...        +.. ..+..+||..|..
T Consensus       320 ~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~  399 (488)
T PF06548_consen  320 SEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRA  399 (488)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence            3555555555554332222333445667777777778888777776666543321        111 3345799999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          259 EVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSL--SAKEKIISELNSELHNIETALSNEREQHMN  336 (682)
Q Consensus       259 DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el--~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~  336 (682)
                      +-|+.+   .-|-.+|..|+.||-..-...++...  . ...-.|++-  ..-+......+.++..+-..++.++.+|..
T Consensus       400 erEkEr---~~l~~eNk~L~~QLrDTAEAVqAagE--l-lvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~  473 (488)
T PF06548_consen  400 EREKER---RFLKDENKGLQIQLRDTAEAVQAAGE--L-LVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKM  473 (488)
T ss_pred             HHHHHH---HHHHHHhHHHHHHHHhHHHHHHHHHH--H-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            866643   45677899999998776655543220  0 000011111  111223345666777777777777777777


Q ss_pred             HHHHHHHHHH
Q 005704          337 EIKKLNALLI  346 (682)
Q Consensus       337 ~~~~L~~ql~  346 (682)
                      +|..|++.+.
T Consensus       474 Ei~t~kq~la  483 (488)
T PF06548_consen  474 EISTMKQYLA  483 (488)
T ss_pred             HHHHHHHHHh
Confidence            7666655443

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=83.12  E-value=33  Score=31.07  Aligned_cols=43  Identities=12%  Similarity=0.398  Sum_probs=33.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK  543 (682)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~  543 (682)
                      +-..++|.|....+-...++..|+..+.....++..++..+..
T Consensus        64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~  106 (110)
T TIGR02338        64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE  106 (110)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888888888888888888888888777777776544

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.92  E-value=67  Score=33.86  Aligned_cols=77  Identities=16%  Similarity=0.316  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704          204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS  283 (682)
Q Consensus       204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~  283 (682)
                      ......++..+..++.+|..|....+.++.++.+.+.+.+    ...++|..+..+++..+.++   ..|.+-|..++-.
T Consensus        37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~----~~~~eik~l~~eI~~~~~~I---~~r~~~l~~raRA  109 (265)
T COG3883          37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEID----QSKAEIKKLQKEIAELKENI---VERQELLKKRARA  109 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            3334444455555555555555555555544444433222    11233444444444443333   2345566666555


Q ss_pred             hhhh
Q 005704          284 ANDE  287 (682)
Q Consensus       284 a~s~  287 (682)
                      ....
T Consensus       110 mq~n  113 (265)
T COG3883         110 MQVN  113 (265)
T ss_pred             HHHc
Confidence            5443

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=82.80  E-value=63  Score=33.50  Aligned_cols=71  Identities=13%  Similarity=0.201  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccc
Q 005704          313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYN  384 (682)
Q Consensus       313 i~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~  384 (682)
                      +..|.....++...+..++......+..|...++........-....+.. ...++..||..|.....--+.
T Consensus       152 ~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~-v~~Ei~~lk~~l~~e~~~R~~  222 (247)
T PF06705_consen  152 LKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNF-VLEEIAALKNALALESQEREQ  222 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence            56678888888888888887777777777766666544333333333321 023455555555555544443

>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants

Probab=82.58  E-value=23  Score=38.75  Aligned_cols=94  Identities=22%  Similarity=0.250  Sum_probs=44.9

Q ss_pred             hhccCCCCHHHHHHHHHHHh-hhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005704          111 KLYEAPDPYPALASIAEQDL-KLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQ  189 (682)
Q Consensus       111 ~L~eaPDP~PlLe~s~~~~~-~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E  189 (682)
                      .|..+|+|.+++...++... .+..+...+..|..+++.|+.+..++..|...+-.-|+   ++|..+           -
T Consensus       117 ~L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~---~~E~~L-----------~  182 (342)
T PF06632_consen  117 KLKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKE---EHEEDL-----------Y  182 (342)
T ss_dssp             E-EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-----------H
T ss_pred             ECCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-----------H
Confidence            56678888875544444332 22235556666666666666666655544433222222   111111           2


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          190 RGLAEENQKTLEILQEREQALQDQLRQAKDSVA  222 (682)
Q Consensus       190 ~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~  222 (682)
                      ..+...+.+|+    .|.+.|++.|..++..-+
T Consensus       183 ~KF~~vLNeKK----~KIR~lq~~L~~~~~~~~  211 (342)
T PF06632_consen  183 AKFVLVLNEKK----AKIRELQRLLASAKEEEK  211 (342)
T ss_dssp             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHH----HHHHHHHHHHHHhhcccc
Confidence            23345666663    345556666666554433

XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.47  E-value=91  Score=35.08  Aligned_cols=95  Identities=21%  Similarity=0.340  Sum_probs=65.8

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccc
Q 005704          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTE  486 (682)
Q Consensus       407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (682)
                      |+.+-..|-.++.-...+-.+ -.+++.++.++..+..+++.-..++.+|-+.|+++-.                     
T Consensus       323 ll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~---------------------  380 (521)
T KOG1937|consen  323 LLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPD---------------------  380 (521)
T ss_pred             HHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCc---------------------
Confidence            444445555554444444444 4667777778888888888888888888888876632                     


Q ss_pred             cccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          487 LSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (682)
Q Consensus       487 ~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~  546 (682)
                                             --||--+-+|+.|+-.-+|++.+.|.....+-..|+.
T Consensus       381 -----------------------dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqk  417 (521)
T KOG1937|consen  381 -----------------------DVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQK  417 (521)
T ss_pred             -----------------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence                                   1236677788888888888888888777777777766

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=82.15  E-value=30  Score=36.44  Aligned_cols=31  Identities=23%  Similarity=0.415  Sum_probs=16.1

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 005704          403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLE  433 (682)
Q Consensus       403 LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~  433 (682)
                      +-+-|.+|.+.+|+=-.+++.|+-.|+.-+.
T Consensus       136 mrssL~ekDkGiQKYFvDINiQN~KLEsLLq  166 (305)
T PF15290_consen  136 MRSSLAEKDKGIQKYFVDINIQNKKLESLLQ  166 (305)
T ss_pred             HHhhhchhhhhHHHHHhhhhhhHhHHHHHHH
Confidence            3344566666666555555555544444433

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=81.63  E-value=68  Score=33.08  Aligned_cols=173  Identities=16%  Similarity=0.241  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 005704          349 EAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEK  428 (682)
Q Consensus       349 ~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l  428 (682)
                      ......+++.+...|  .....++++|.-++.-  ........    .+.....|+..|.    ...++|..+...+...
T Consensus        37 ~~~~~~~~~~i~~aP--~~~~~l~~~l~~l~~~--~~~~~~~~----~~~s~~eLeq~l~----~~~~~L~~~q~~l~~~  104 (240)
T PF12795_consen   37 KKRAAEYQKQIDQAP--KEIRELQKELEALKSQ--DAPSKEIL----ANLSLEELEQRLS----QEQAQLQELQEQLQQE  104 (240)
T ss_pred             HHHHHHHHHHHHHhH--HHHHHHHHHHHhhhcc--ccccccCc----ccCCHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            334556666666663  7788889999888754  11000000    1111234455444    4556667888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccccc----c-cccccC-CCCCCCcc
Q 005704          429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTEL----S-EKADKK-HTYPDQDQ  502 (682)
Q Consensus       429 ~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~-~~~~~~~~  502 (682)
                      ...+..++.........+.+....+..++.+|........        .+++.+....+    . -..-+. ---.-.+.
T Consensus       105 ~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~--------~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~  176 (240)
T PF12795_consen  105 NSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGE--------SPLSEAQRWLLQAELAALEAQIEMLEQELLSN  176 (240)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCc--------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            8888888888888888888888888888888764322110        01000000000    0 000000 00001256


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAEL  541 (682)
Q Consensus       503 ~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei  541 (682)
                      +.+..+.+.|||-+..++.-++..+..++..++.+|..-
T Consensus       177 ~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~e  215 (240)
T PF12795_consen  177 NNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQE  215 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777788888888888888888888887777766543

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=81.36  E-value=1.6e+02  Score=37.24  Aligned_cols=25  Identities=4%  Similarity=0.142  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704          259 EVERAQTRLLSLQREKDLLRSQLQS  283 (682)
Q Consensus       259 DLEra~~R~~~LE~e~E~Lr~eL~~  283 (682)
                      +++..+.++..+......++..+..
T Consensus       778 ~~~~l~~~i~~~~~~~~~~~~~~~~  802 (1047)
T PRK10246        778 TLTQLEQLKQNLENQRQQAQTLVTQ  802 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555555555555554443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=81.23  E-value=30  Score=38.17  Aligned_cols=63  Identities=10%  Similarity=0.244  Sum_probs=36.3

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704          402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (682)
Q Consensus       402 ~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~  465 (682)
                      +||. +-.|.+-+.+++..+..+......++...+.....+..-+.+......++-..|+.+..
T Consensus       253 ~lek-I~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~  315 (359)
T PF10498_consen  253 TLEK-IESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQ  315 (359)
T ss_pred             HHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 55566666666666666555566666666666666666555555555555555555543

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]

Probab=80.91  E-value=86  Score=33.74  Aligned_cols=192  Identities=19%  Similarity=0.187  Sum_probs=0.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          137 SENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQ  216 (682)
Q Consensus       137 ~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~  216 (682)
                      ..+.+|++.|-+|..++..+-.||.+   ..+-+....++.+ .-.....++-....-.............+...++...
T Consensus       130 ~~n~klre~NieL~eKlkeL~eQy~~---re~hidk~~e~ke-l~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~l  205 (391)
T KOG1850|consen  130 SKNDKLREDNIELSEKLKELGEQYEE---REKHIDKQIQKKE-LWEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDEL  205 (391)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchHH--HHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 005704          217 AKDSVATMQKLHELAQSQLFEVRAQSDEE--RVAKQSEV-NLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNS  293 (682)
Q Consensus       217 ae~~l~eL~~~le~~Q~eL~~l~~k~~ee--~~a~~aEl-e~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~  293 (682)
                      ++..++++...--..+.+++.--.+|++=  +-++..|+ .-...++|+.+.++..+|++--..|..-+.++...-    
T Consensus       206 ak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL----  281 (391)
T KOG1850|consen  206 AKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVL----  281 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----


Q ss_pred             CCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          294 DTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNA  343 (682)
Q Consensus       294 ~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~  343 (682)
                             .+-.+-...+..+..|.-.+++|+--+..++.....-...++.
T Consensus       282 -------~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~  324 (391)
T KOG1850|consen  282 -------QLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLED  324 (391)
T ss_pred             -------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=80.67  E-value=1.4e+02  Score=36.13  Aligned_cols=32  Identities=13%  Similarity=0.063  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQL  281 (682)
Q Consensus       250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL  281 (682)
                      ..++..|..|.+.++.-...+-.+.++.+-..
T Consensus       375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~  406 (754)
T TIGR01005       375 QVDLDALQRDAAAKRQLYESYLTNYRQAASRQ  406 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            56777788888887777777777777766544

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	682
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-07
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	1e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	5e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 81.1 bits (199), Expect = 6e-16
 Identities = 97/653 (14%), Positives = 189/653 (28%), Gaps = 180/653 (27%)

Query: 26  NFWKDFD----LEKEKSLL-----DE-LGLK------------IAENQENS--------- 54
            F  +FD     +  KS+L     D  +  K            +   QE           
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 55  QKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYE 114
           + N + L    +  ++  P     ++         +     K        +L + Q L E
Sbjct: 88  RINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 115 A-PDPY-----------PALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQST 162
             P                +A       K+ + + + +   + L+   +  T L+  Q  
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 163 IRRLEERNRQLEQQMEEKVKEIVEIKQ--RGLAEENQ--KTLEILQEREQALQDQLRQAK 218
           + +++                I  I+   R L +       L +L               
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--------------- 250

Query: 219 DSVATMQKLHELA-QSQ-LFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDL 276
            +V   +  +      + L   R +   + ++  +  ++ +D         L+    K L
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT----LTPDEVKSL 306

Query: 277 LRSQL-QSAND---EAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNERE 332
           L   L     D   E  + N   L               II+E   +          +  
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRL--------------SIIAESIRDGLAT-----WDNW 347

Query: 333 QHMNEIKKLNALLIEKEAALEDMK-KELQARPTSKMVDDL---RKKVKI----LQAVGYN 384
           +H+N   KL  ++   E++L  ++  E +     KM D L        I    L  +   
Sbjct: 348 KHVN-CDKLTTII---ESSLNVLEPAEYR-----KMFDRLSVFPPSAHIPTILLSLI--- 395

Query: 385 SIEAEDWEVATNDEEMSKMESL----LLDKNRKME----HELTQ-LKVKLSEKTSLLETA 435
                 W      + M  +  L    L++K  K        +   LKVKL  + +L    
Sbjct: 396 ------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL---- 445

Query: 436 EGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAG----GTELSEKA 491
                         + ++     +I K + S D      D +  S  G      E  E+ 
Sbjct: 446 -------------HRSIVDH--YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 492 DK-KHTYPDQDQSSMLKVICNQRDRF-RARLRETEEEVRQLKEKIGVLTAELEKTK---A 546
              +  + D               RF   ++R            +  L  +L+  K    
Sbjct: 491 TLFRMVFLD--------------FRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKPYIC 535

Query: 547 DNVQLYGK-----IRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMY 594
           DN   Y +     + F+       + S    KY + L     ++ E+ +++ +
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICS----KYTDLLRIALMAEDEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 3e-11
 Identities = 59/383 (15%), Positives = 119/383 (31%), Gaps = 97/383 (25%)

Query: 25  SNFWKDFDLE-------KEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKL 77
           +  W  F+L        + K + D L          +      L   +      +P+E  
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLS--------AATTTHISLDHHSMTL---TPDEVK 304

Query: 78  SLFNSLLKGYQEEVDNLTKRAKFGENAFLNI-YQKL-YEAPDPYP-ALASIAE------- 127
           SL                   K+     L+   Q L  E     P  L+ IAE       
Sbjct: 305 SLL-----------------LKY-----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 128 --QDLKLSELESENRKMKIELE-----EYRTEATHL----KNQQSTIRRLEERNRQLEQQ 176
              + K    +     ++  L      EYR     L     +       L      +   
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS----LIWFD 398

Query: 177 MEEKVKEIV--EIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQ 234
           + +    +V  ++ +  L E+  K   I      ++     + K  +     LH      
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTI------SIPSIYLELKVKLENEYALHRSIVDH 452

Query: 235 LFEVRAQSDEERVAKQSEVNLL-------MDEVERAQTRLLSLQREK--DL--LRSQLQ- 282
            + +    D + +                +  +E  +   ++L R    D   L  +++ 
Sbjct: 453 -YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE--RMTLFRMVFLDFRFLEQKIRH 509

Query: 283 --SANDEAGSRNSDTLDSNSYLE---NSLSAKEKIISELNSELHNIETALSNEREQHMNE 337
             +A + +GS  +       Y     ++    E++++ +   L  IE  L     ++ + 
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI--CSKYTDL 567

Query: 338 IKKLNALLIEKEAALEDMKKELQ 360
           ++   AL+ E EA  E+  K++Q
Sbjct: 568 LRI--ALMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 1e-07
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 57/225 (25%)

Query: 20  PVSVISNFWKDFDLEKE---------KSLLDE-----------LGLKIAENQENSQKNRR 59
           P  ++S  W D                SL+++           + L++    EN     R
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 60  KLAESTRDFKKASPEEKLSL------FNSLLKGYQEEVDNLTKRAKFGENAFLN---IYQ 110
            + +     K    ++ +        ++ +  G+  +     +R       FL+   + Q
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 111 KLYEAPDPYPALASIAE--QDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEE 168
           K+      + A  SI    Q LK                 Y+    ++ +      RL  
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKF----------------YK---PYICDNDPKYERLVN 546

Query: 169 RNRQLEQQMEEKV--KEIVEIKQRGLAEENQKTLEILQEREQALQ 211
                  ++EE +   +  ++ +  L  E++    I +E  + +Q
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDE---AIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 3e-05
 Identities = 47/346 (13%), Positives = 98/346 (28%), Gaps = 114/346 (32%)

Query: 321 HNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380
           H+++     E +    +I  +           +            K V D+ K +     
Sbjct: 5   HHMDFET-GEHQYQYKDILSVF---------EDAFVDNFDC----KDVQDMPKSI----- 45

Query: 381 VGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIA 440
                              +SK E   +D     +  ++           L  T   K  
Sbjct: 46  -------------------LSKEE---IDHIIMSKDAVSGTLR-------LFWTLLSK-- 74

Query: 441 ELTAKINEQQKLIQKLEDDIL-KGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPD 499
                   Q++++QK  +++L   Y            + L     TE  + +     Y +
Sbjct: 75  --------QEEMVQKFVEEVLRINY-----------KF-LMSPIKTEQRQPSMMTRMYIE 114

Query: 500 QDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF-- 557
           Q        + N    F        +   +L++ +      LE   A NV + G +    
Sbjct: 115 Q-----RDRLYNDNQVFAKYNVSRLQPYLKLRQAL------LELRPAKNVLIDGVLGSGK 163

Query: 558 ------------VQDYNNEKV--ISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAA 603
                       VQ   + K+  ++  +    E +       +E   +K+       + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-------LE-MLQKLLYQIDPNWTS 215

Query: 604 FSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHV 649
            S    + + +   I+  +     R L    Y         +LL+V
Sbjct: 216 RSDHSSNIKLRIHSIQAELR----RLLKSKPYENC----LLVLLNV 253

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 79.5 bits (196), Expect = 2e-15
 Identities = 56/303 (18%), Positives = 128/303 (42%), Gaps = 23/303 (7%)

Query: 163  IRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVA 222
            ++  +E  ++ +++ ++   E+ E++Q+      +K   +LQE+ QA  +   +A++   
Sbjct: 859  MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKN--LLQEKLQAETELYAEAEEMRV 916

Query: 223  TMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282
             +    +  +  L E+ A+ +EE    +     L  E ++ Q ++L L+ + +   +  Q
Sbjct: 917  RLAAKKQELEEILHEMEARIEEE----EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972

Query: 283  SANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETA---LSNEREQHMNEIK 339
                E  + +         +E+ +   E   ++L  E   +E     L+    +   + K
Sbjct: 973  KLQLEKVTADGKIKK----MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 340  KLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEE 399
             L  L  + E+ + +++  L+     K   +L K  +         +E E  ++     E
Sbjct: 1029 NLTKLKNKHESMISELEVRLKK--EEKSRQELEKIKR--------KLEGESSDLHEQIAE 1078

Query: 400  MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDD 459
            +    + L  +  K E EL     +L ++TS    A  KI EL + I++ Q+ ++  +  
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138

Query: 460  ILK 462
              K
Sbjct: 1139 RNK 1141

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 78.0 bits (192), Expect = 5e-15
 Identities = 56/322 (17%), Positives = 125/322 (38%), Gaps = 19/322 (5%)

Query: 131  KLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQR 190
            +L ELE ++ ++  E    + +        +    +  R    +Q++EE + E+ E +  
Sbjct: 879  ELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM-EARIE 937

Query: 191  GLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQ 250
               E +Q+     ++ +Q + D   Q ++  A  QKL     +   +++ + +++ +  +
Sbjct: 938  EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK-KMEDDILIME 996

Query: 251  SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKE 310
             + N L  E +  + R+  L         + ++         S   +    LE  L  +E
Sbjct: 997  DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE----LEVRLKKEE 1052

Query: 311  KIISELNSELHNIET---ALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
            K   EL      +E     L  +  +   +I +L A L +KE  L+     L+    +  
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE--TSQ 1110

Query: 368  VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
             ++  KK++ L++     I     ++ +     +K E     + R +  EL  LK +L +
Sbjct: 1111 KNNALKKIRELES----HISDLQEDLESEKAARNKAEK----QKRDLSEELEALKTELED 1162

Query: 428  KTSLLETAEGKIAELTAKINEQ 449
                  T +          +++
Sbjct: 1163 TLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.4 bits (188), Expect = 2e-14
 Identities = 49/258 (18%), Positives = 113/258 (43%), Gaps = 18/258 (6%)

Query: 125  IAEQDLKLSELESENRKMKIELEEYRTEATHLKNQ----QSTIRRLEERNRQLEQQMEEK 180
            + E + ++ E E  +++++ E ++ + +   L+ Q    ++  ++L+      + ++++ 
Sbjct: 929  LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988

Query: 181  VKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240
              +I+ ++ +    +  K  ++L+ER   L   L + ++    + KL    +S + E+  
Sbjct: 989  EDDILIMEDQ--NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV 1046

Query: 241  QSDEERVAKQ---SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLD 297
            +  +E  ++Q        L  E      ++  LQ +   L++QL    +E  +  +   D
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106

Query: 298  SNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKK 357
              S   N+L    K I EL S + +++  L +E+       K+   L       LE +K 
Sbjct: 1107 ETSQKNNAL----KKIRELESHISDLQEDLESEKAARNKAEKQKRDL----SEELEALKT 1158

Query: 358  ELQ-ARPTSKMVDDLRKK 374
            EL+    T+    +LR  
Sbjct: 1159 ELEDTLDTTATQQELRGS 1176

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 67.6 bits (165), Expect = 1e-11
 Identities = 73/431 (16%), Positives = 153/431 (35%), Gaps = 56/431 (12%)

Query: 140  RKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIV-----EIKQRGLAE 194
               +    + + +   +   Q  +R            +   +  ++     E + +   E
Sbjct: 805  YLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDE 864

Query: 195  ENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVN 254
            E Q+T E  Q+ E  L++  ++          L E  Q++  E+ A+++E RV   ++  
Sbjct: 865  ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAET-ELYAEAEEMRVRLAAKKQ 923

Query: 255  LLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIIS 314
             L + +   + R+   +        QLQ+   +   +  D       LE  L  +E    
Sbjct: 924  ELEEILHEMEARIEEEEER----SQQLQAEKKKMQQQMLD-------LEEQLEEEEAARQ 972

Query: 315  ELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKK 374
            +L  E    +  +    +  +    + N L  E++  LE+   +L        + +  +K
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL-LEERVSDLTTN-----LAEEEEK 1026

Query: 375  VKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLET 434
             K L  +  N  E+   E+    ++  K    L    RK+E E + L  +++E  + +  
Sbjct: 1027 AKNLTKL-KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

Query: 435  AEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKK 494
             +   A+L  K  E Q  + +LED+                      +      +K  + 
Sbjct: 1086 LK---AQLAKKEEELQAALARLEDE---------------------TSQKNNALKKIREL 1121

Query: 495  HTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGK 554
                 +   S L+      +  +A   + E++ R L E++  L  ELE T          
Sbjct: 1122 -----ESHISDLQ---EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173

Query: 555  IRFVQDYNNEK 565
                   +++K
Sbjct: 1174 RGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 52/281 (18%), Positives = 104/281 (37%), Gaps = 22/281 (7%)

Query: 306  LSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNAL--LIEKEAALEDMKKELQARP 363
            + AK++ +          E  L    ++H    ++ N L   ++ E  L    +E++ R 
Sbjct: 859  MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918

Query: 364  TSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKV 423
             +K  + L + +  ++A                 EE  +    L  + +KM+ ++  L+ 
Sbjct: 919  AAKKQE-LEEILHEMEA---------------RIEEEEERSQQLQAEKKKMQQQMLDLEE 962

Query: 424  KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAG 483
            +L E+ +  +  + +      KI + +  I  +ED   K    +        D   + A 
Sbjct: 963  QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022

Query: 484  GTELSEKADK---KHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
              E ++   K   KH     +    LK     R       R+ E E   L E+I  L A+
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082

Query: 541  LEKTKADNVQLYGKI-RFVQDYNNEKVISRGSKKYAEDLES 580
            + + KA   +   ++   +    +E      + K   +LES
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES 1123

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 27/168 (16%), Positives = 65/168 (38%), Gaps = 13/168 (7%)

Query: 32   DLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEV 91
            +L K K+  + +  ++    +  +K+R++L +  R       E + S  +  +   Q ++
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL-----EGESSDLHEQIAELQAQI 1083

Query: 92   DNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRT 151
              L  +    E        +L +        +       K+ ELES    ++ +LE  + 
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDE------TSQKNNALKKIRELESHISDLQEDLESEKA 1137

Query: 152  EATHLKNQQSTIRR-LEERNRQLEQQMEEKVKEIVEIKQRGLAEENQK 198
                 + Q+  +   LE    +LE  ++    +  E++     +++ K
Sbjct: 1138 ARNKAEKQKRDLSEELEALKTELEDTLDTTATQQ-ELRGSDYKDDDDK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 67.4 bits (165), Expect = 1e-11
 Identities = 39/237 (16%), Positives = 84/237 (35%), Gaps = 20/237 (8%)

Query: 131  KLSELESENRKMKIELE-EYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQ 189
            K   +  E++ + I+          H       I  L+   R++  + E K  +I     
Sbjct: 857  KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV 916

Query: 190  RGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA------QSD 243
                + +      + + ++ + +Q ++ K  +  M  L     ++  ++R+       S+
Sbjct: 917  ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976

Query: 244  EERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLE 303
            EE     + V  L +E+ + +  L   Q EK  +         E     S+       L+
Sbjct: 977  EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE-------LK 1029

Query: 304  NSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360
               +  +    ELN  +H+    ++   E+ + E  K      + E  L D +   Q
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK------QLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 49/391 (12%), Positives = 114/391 (29%), Gaps = 72/391 (18%)

Query: 97   RAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKM---KI--------E 145
            R  + E  F + Y+ L +  D         +  L+   L+ +  +    KI         
Sbjct: 701  RWTYQE--FFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAY 758

Query: 146  LEEYRTE-----ATHLKNQQSTIRRLEERNRQLEQQ-----------MEEKVKEIVEIKQ 189
            LE+ R +        +   Q TIR    R + +  +             +       +++
Sbjct: 759  LEKIRADKLRAACIRI---QKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRR 815

Query: 190  RGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAK 249
               A   QK   +   R++    +             L       +         ++  +
Sbjct: 816  TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVR 875

Query: 250  QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAK 309
                 +      +A   L    R   + + +L+    EA S            +      
Sbjct: 876  GWLARVHYHRTLKAIVYLQCCYRRM-MAKRELKKLKIEARSVER--------YKKLHIGL 926

Query: 310  EKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVD 369
            E  I +L  ++        +  E+    +  L      +   L    + L+   + +   
Sbjct: 927  ENKIMQLQRKIDEQNKEYKSLLEK----MNNLEITYSTETEKLRSDVERLRM--SEEEAK 980

Query: 370  DLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKT 429
            +   +V  LQ            E+A   +E+ + ++    + + +E    + K +  +  
Sbjct: 981  NATNRVLSLQE-----------EIAKLRKELHQTQT----EKKTIEEWADKYKHETEQL- 1024

Query: 430  SLLETAEGKIAELTAKINEQQKLIQKLEDDI 460
                     ++EL  +    +   ++L   I
Sbjct: 1025 ---------VSELKEQNTLLKTEKEELNRRI 1046

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 32/209 (15%), Positives = 71/209 (33%), Gaps = 28/209 (13%)

Query: 58   RRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPD 117
            RR +A+      K      +  +  L  G + ++  L ++                    
Sbjct: 898  RRMMAKRELKKLKIE-ARSVERYKKLHIGLENKIMQLQRKIDEQNKE------------- 943

Query: 118  PYPALASIAEQDLKL-SELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQ 176
                  S+ E+   L     +E  K++ ++E  R      KN  + +  L+E   +L ++
Sbjct: 944  ----YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999

Query: 177  MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF 236
            + +   E      + + E   K     ++    L++Q    K     + +       ++ 
Sbjct: 1000 LHQTQTEK-----KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054

Query: 237  EVRAQSDEERVAK-QSEVNLLMDEVERAQ 264
            E   +   E   + + ++N   DE  R Q
Sbjct: 1055 ETMEKKLVEETKQLELDLN---DERLRYQ 1080

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 48.0 bits (113), Expect = 1e-05
 Identities = 51/406 (12%), Positives = 128/406 (31%), Gaps = 23/406 (5%)

Query: 133 SELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGL 192
            +LE      ++       E   L+   +T++     + +      E            +
Sbjct: 287 QKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSE------GKMVSDI 340

Query: 193 AEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQS-----QLFEVRAQSDEERV 247
                   +  +  E+ L +++R+ +      +K  + A          E   Q  +   
Sbjct: 341 NNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYET 400

Query: 248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLS 307
           A  SE+  L+ + E  ++ L + Q   + + +  Q  N+     +         + +   
Sbjct: 401 ATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWD 460

Query: 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
               +  +    L   E  L    + ++   K+        E A+ED++       T + 
Sbjct: 461 NLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFI-VHTIEE 519

Query: 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
           +  L    +  +A    ++   D E        +++  ++   +  M        +   E
Sbjct: 520 IQGLTTAHEQFKA----TLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQE 575

Query: 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTEL 487
                E     +      + E+    Q+ E    +       + NV   W +      E 
Sbjct: 576 INGKWEHVRQLVPRRDQALMEEHARQQQNE----RLRKQFGAQANVIGPW-IQTK--MEE 628

Query: 488 SEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEK 533
             +   +     +DQ + L+        ++ ++ + E + +Q++E 
Sbjct: 629 IGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEA 674

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 36/279 (12%), Positives = 83/279 (29%), Gaps = 41/279 (14%)

Query: 118  PYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRR------------ 165
               AL  +  +  +  +LE+          +      +         R            
Sbjct: 1814 SPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQ 1873

Query: 166  -LEERNRQLEQQM--------EEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQ 216
             + E N +L ++            +  I ++    L  E +  LE  Q        +LR 
Sbjct: 1874 TIGEANIRLLKRQGRQNYVTPRHYLDFINQVVL--LINEKRDQLEEEQLHLNIGLKKLRD 1931

Query: 217  AKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDL 276
             +  V  +Q        +L             K  + N  + ++ + Q      Q++   
Sbjct: 1932 TEAQVKDLQVSLAQKNREL-----------DVKNEQANQKLKQMVQDQQAAEIKQKDARE 1980

Query: 277  LRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN 336
            L+ QL   N E   +      ++           + + +L +  + ++          + 
Sbjct: 1981 LQVQLDVRNKEIAVQKVKA-YADLEKAEPTGPLREEVEQLENAANELKLKQDEIVAT-IT 2038

Query: 337  EIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKV 375
             ++K  A   E+ A L    ++++          ++ KV
Sbjct: 2039 ALEKSIATYKEEYATLIRETEQIK-----TESSKVKNKV 2072

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 13/36 (36%)

Query: 88  QEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALA 123
           ++ +  L       + +      KLY A D  PALA
Sbjct: 19  KQALKKL-------QASL-----KLY-ADDSAPALA 41

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 39/288 (13%), Positives = 96/288 (33%), Gaps = 37/288 (12%)

Query: 172  QLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELA 231
            ++E+  E+++            +   + ++ + +++ +L+   R   DS+ ++Q      
Sbjct: 753  RIEEAREQRLGSEQTKSDY--LKRANELVQWINDKQASLE--SRDFGDSIESVQSF---- 804

Query: 232  QSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSR 291
                  + A     +  K++E      EV   +    SLQ +  L++ +   A       
Sbjct: 805  ------MNAH----KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPN 854

Query: 292  NSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAA 351
                      ++++ SA EK   E    L                 ++K N +L + E  
Sbjct: 855  ---------EIDSTWSALEKAEQEHAEALRIELKRQKKIAV----LLQKYNRILKKLENW 901

Query: 352  LEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKN 411
                   L +  T   +  ++ K+K L+A        E    +     ++++  L  +  
Sbjct: 902  ATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGV 961

Query: 412  RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDD 459
             ++         +           +         +  + + +QK+ED 
Sbjct: 962  PELTERKDTFFAQQ------WTGVKSSAETYKNTLLAELERLQKIEDL 1003

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 16/178 (8%), Positives = 50/178 (28%), Gaps = 8/178 (4%)

Query: 53  NSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKF---GENAFLNIY 109
           NS + + +L +       A      +  +S     ++      +  +     +     + 
Sbjct: 823 NSLQTKLRLIKREPFVAPA--GLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLL 880

Query: 110 QKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEER 169
           QK           A+     L  +E       ++ +L+         ++ +    +    
Sbjct: 881 QKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLE---GQSNSD 937

Query: 170 NRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKL 227
              +  Q+ E     V            +    ++   +  ++ L    + +  ++ L
Sbjct: 938 LLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 995

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	682
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.44
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.1
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.27
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.14
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.78
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.63
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	96.48
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	96.33
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.27
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.96
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.36
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.04
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	94.93
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.61
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.48
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	93.38
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	92.76
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.39
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	92.31
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	89.8
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	89.74
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	89.7
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	89.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	89.54
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	89.52
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	89.38
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	88.91
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	88.86
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	88.27
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	88.07
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	86.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	86.41
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	86.38
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	85.68
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	85.65
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	85.65
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	85.37
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	84.61
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	83.78
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	82.95
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	82.94
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	81.85
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	81.77
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	81.75
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	81.6
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	81.5
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	80.21
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	80.13

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.44  E-value=5e-07  Score=111.40  Aligned_cols=18  Identities=17%  Similarity=0.189  Sum_probs=7.4

Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 005704          138 ENRKMKIELEEYRTEATH  155 (682)
Q Consensus       138 E~~kL~~el~~l~~el~~  155 (682)
                      ++..|++++.+++..+..
T Consensus       858 El~~L~~eL~el~~~L~~  875 (1184)
T 1i84_S          858 EMQAKDEELQRTKERQQK  875 (1184)
T ss_dssp             HCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444433333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.10  E-value=8.2e-06  Score=100.64  Aligned_cols=76  Identities=8%  Similarity=0.073  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          206 REQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (682)
Q Consensus       206 re~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~  285 (682)
                      +...+..++..++..+.+++..+...+.++..+.....    ....++..+..++++...+...++.+.+.|..+++...
T Consensus       865 eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~----~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~e  940 (1184)
T 1i84_S          865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ----AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE  940 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444333332111    11223333344444444455555555555555554433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.27  E-value=0.022  Score=55.15  Aligned_cols=85  Identities=15%  Similarity=0.116  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH-------HHhhHHHHHHHHHHHHHHHHHHHH
Q 005704          197 QKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE-------RVAKQSEVNLLMDEVERAQTRLLS  269 (682)
Q Consensus       197 eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee-------~~a~~aEle~l~~DLEra~~R~~~  269 (682)
                      ++...--.+-+.+|..+|..+++.+.+|+..+.....++..++.|+..-       ......|+..+....+....++.+
T Consensus        34 ~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ire  113 (189)
T 2v71_A           34 VEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE  113 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333445566777777777777777777777777777777776544       333456666666666666777777


Q ss_pred             HHHHHHHHHHHH
Q 005704          270 LQREKDLLRSQL  281 (682)
Q Consensus       270 LE~e~E~Lr~eL  281 (682)
                      ||..|+.|....
T Consensus       114 LEq~NDdlEr~~  125 (189)
T 2v71_A          114 LEQANDDLERAK  125 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHH
Confidence            777666665443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.14  E-value=0.13  Score=52.20  Aligned_cols=136  Identities=18%  Similarity=0.210  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704          204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS  283 (682)
Q Consensus       204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~  283 (682)
                      .....++..++..++..+.+++...+..+.++...+  .       .-|+..+..+++.+..++..++.+.-.+-.+++.
T Consensus        52 ~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~--~-------~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~  122 (256)
T 3na7_A           52 EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK--S-------ERELRSLNIEEDIAKERSNQANREIENLQNEIKR  122 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--S-------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555666677777777777777777776665433  1       2345555555555555555555555555544432


Q ss_pred             hhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005704          284 ANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARP  363 (682)
Q Consensus       284 a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~  363 (682)
                      ..                         ..+..+...+..++..+...+......++.+...+..+......+...+..- 
T Consensus       123 ~~-------------------------~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~-  176 (256)
T 3na7_A          123 KS-------------------------EKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPK-  176 (256)
T ss_dssp             HH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-
T ss_pred             HH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH-
Confidence            21                         1133333334444444444444455555555555555444444444433210 


Q ss_pred             ChhhHHHHHHH
Q 005704          364 TSKMVDDLRKK  374 (682)
Q Consensus       364 ~~sDyeelK~E  374 (682)
                      -..-|+-|++-
T Consensus       177 lL~~Yerir~~  187 (256)
T 3na7_A          177 IYSFYERIRRW  187 (256)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            13457777763

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.78  E-value=0.36  Score=46.60  Aligned_cols=56  Identities=7%  Similarity=0.086  Sum_probs=34.3

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILK  462 (682)
Q Consensus       407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~  462 (682)
                      |...+..|...|..|...+++++.........+..+...+...=..|+=||.+|..
T Consensus       100 l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E  155 (189)
T 2v71_A          100 TRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE  155 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555556666666666666666666666666666666666666666666653

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.63  E-value=0.95  Score=60.59  Aligned_cols=83  Identities=16%  Similarity=0.157  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005704          250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSN  329 (682)
Q Consensus       250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~  329 (682)
                      .+++...+..|..++.++.+++.+++.|+.+++++....+...    ......+..+..-++-|.-|.+|..|...+...
T Consensus      2020 e~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~----~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A         2020 ENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIK----TESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence            3455555566666666666666666666666665544332100    000112222333344566667777776666665


Q ss_pred             HHHHHHH
Q 005704          330 EREQHMN  336 (682)
Q Consensus       330 ~r~~~~~  336 (682)
                      .......
T Consensus      2096 l~~~~~~ 2102 (3245)
T 3vkg_A         2096 FNTQMST 2102 (3245)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5554433

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=96.48  E-value=0.023  Score=48.20  Aligned_cols=78  Identities=18%  Similarity=0.297  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704          208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA  284 (682)
Q Consensus       208 ~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee---~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a  284 (682)
                      .+|+.|+..+......+...++..+..+.+++.||+++   .....+++..+..|++.+..-..+||..++.|+++|.-.
T Consensus         3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A            3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888888888888899999999999999998   445568899999999999999999999999999999865


Q ss_pred             h
Q 005704          285 N  285 (682)
Q Consensus       285 ~  285 (682)
                      +
T Consensus        83 k   83 (86)
T 3swk_A           83 K   83 (86)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.27  E-value=0.73  Score=46.72  Aligned_cols=70  Identities=14%  Similarity=0.257  Sum_probs=35.4

Q ss_pred             hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 005704          301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQ  379 (682)
Q Consensus       301 ~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk  379 (682)
                      .+..++......+..++.++..+...++....    .+..++..+..+...+...+..+..     ...+++.++..|.
T Consensus        94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~----~l~~~~~~l~~~~~~l~~~~~~~~~-----~~~e~~~e~~~l~  163 (256)
T 3na7_A           94 SLNIEEDIAKERSNQANREIENLQNEIKRKSE----KQEDLKKEMLELEKLALELESLVEN-----EVKNIKETQQIIF  163 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence            44444555555556666665555555443332    3344444444544444444444443     4566666666554

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.96  E-value=1.1  Score=42.24  Aligned_cols=37  Identities=8%  Similarity=0.059  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE  287 (682)
Q Consensus       251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~  287 (682)
                      ++++--..+.-.....+.+++.++..|..+|......
T Consensus        76 a~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~  112 (168)
T 3o0z_A           76 AILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN  112 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444555566666666666666554443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.36  E-value=0.22  Score=60.69  Aligned_cols=35  Identities=31%  Similarity=0.461  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN  285 (682)
Q Consensus       251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~  285 (682)
                      ++++.+..+++.+..++..|+.+++.|+.++..+.
T Consensus       970 ~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A          970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444455555666666666665555443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.04  E-value=0.46  Score=57.82  Aligned_cols=10  Identities=30%  Similarity=0.630  Sum_probs=6.7

Q ss_pred             HHHHHhhhhc
Q 005704          104 AFLNIYQKLY  113 (682)
Q Consensus       104 aFl~~Y~~L~  113 (682)
                      .|+.=|+.|.
T Consensus       706 eF~~RY~~L~  715 (1080)
T 2dfs_A          706 EFFSRYRVLM  715 (1080)
T ss_dssp             HHHHHHTTTS
T ss_pred             HHHHHHHHHC
Confidence            3777777765

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=94.93  E-value=0.32  Score=42.95  Aligned_cols=72  Identities=18%  Similarity=0.232  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKD  275 (682)
Q Consensus       196 ~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E  275 (682)
                      |.++...-......|..++...+..+.+|+.              .+..-......+|..|+.+-++...++..|+++|+
T Consensus        36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq--------------~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd  101 (112)
T 1x79_B           36 IKQSSEDSSHQISALVLRAQASEILLEELQQ--------------GLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDND  101 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4444444444444555555555555555544              44444455678899999999999999999999999


Q ss_pred             HHHHHH
Q 005704          276 LLRSQL  281 (682)
Q Consensus       276 ~Lr~eL  281 (682)
                      .|.+.-
T Consensus       102 ~L~Gk~  107 (112)
T 1x79_B          102 SLQGKH  107 (112)
T ss_dssp             ------
T ss_pred             chhhhh
Confidence            998653

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.61  E-value=5.2  Score=53.74  Aligned_cols=22  Identities=14%  Similarity=0.034  Sum_probs=12.2

Q ss_pred             HHHhhHHHHHHhHHHHHHHhhh
Q 005704           76 KLSLFNSLLKGYQEEVDNLTKR   97 (682)
Q Consensus        76 kl~~~~~LLK~yQ~EID~LTkR   97 (682)
                      .+..+......+..-|..++.+
T Consensus      1860 ~~~~~~~~~~~iH~sv~~~s~~ 1881 (3245)
T 3vkg_A         1860 HRDAVVSSLVYIHQTIGEANIR 1881 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666666555555443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.48  E-value=2.6  Score=39.75  Aligned_cols=123  Identities=15%  Similarity=0.199  Sum_probs=92.2

Q ss_pred             hchHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 005704          400 MSKMESLLLDKNRKMEHE---LTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDD  476 (682)
Q Consensus       400 ~~~LE~lLl~kNrkL~~e---Lt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~  476 (682)
                      ...|+..|.+-|.+|..+   .+.+|.++.++...+..+......+...+..+..--..||.++..++.           
T Consensus         8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa-----------   76 (168)
T 3o0z_A            8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA-----------   76 (168)
T ss_dssp             --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            456788888888888765   457788888888888888888888888888888888888888877664           


Q ss_pred             CccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHH
Q 005704          477 WDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIR  556 (682)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiR  556 (682)
                                                  .|.--..-|.+--..+.+|+..+..+...+..++.-...+..||-+|-|+|-
T Consensus        77 ----------------------------~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~  128 (168)
T 3o0z_A           77 ----------------------------ILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN  128 (168)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                        3444455566666777788888888888888888888888888888888887


Q ss_pred             Hhhhc
Q 005704          557 FVQDY  561 (682)
Q Consensus       557 ylqsy  561 (682)
                      -|+-.
T Consensus       129 ~lEKe  133 (168)
T 3o0z_A          129 HSEKE  133 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76653

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=93.38  E-value=4.2  Score=36.43  Aligned_cols=131  Identities=24%  Similarity=0.334  Sum_probs=85.3

Q ss_pred             hhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          366 KMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK  445 (682)
Q Consensus       366 sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~e  445 (682)
                      .+.++++-||+|.-.+              .+.+..++++ |.-||--.+.+|..||..+..++..++..+..+.+-..+
T Consensus        25 ~eleEnqeEL~iVgkM--------------L~EEqgKVDQ-lqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~q   89 (167)
T 4gkw_A           25 KQLEENQEELEIVGNM--------------LREEQGKVDQ-LQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQ   89 (167)
T ss_dssp             HHHHHHHHHHHHHHHH--------------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH--------------HHHHHhhHHH-HHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH
Confidence            4567777888877665              2233456777 889999999999999999999999999888888776665


Q ss_pred             HHHHHHHHH---HHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 005704          446 INEQQKLIQ---KLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRE  522 (682)
Q Consensus       446 l~~~~~l~~---kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~E  522 (682)
                      -..+.--+.   .||.||-.-                                       .+|..-+|.-.--+|.   |
T Consensus        90 QnQQSlDiRKLrELEADLKEK---------------------------------------DsMVe~LT~TiG~LrK---E  127 (167)
T 4gkw_A           90 QNQQSLDMRKLGELEADLKEK---------------------------------------DSMVESLTETIGILRK---E  127 (167)
T ss_dssp             HHHHHHHHHHTHHHHHTHHHH---------------------------------------HHHHHHHHHHHHHHHH---H
T ss_pred             HhHhhhhHHHHHHHHhHHhhh---------------------------------------hHHHHHHHHHHHHHHH---H
Confidence            555444443   467776533                                       3344444444444443   4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 005704          523 TEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF  557 (682)
Q Consensus       523 LE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRy  557 (682)
                      ||.+.-+......+    .++|+-.|-.+-|++-.
T Consensus       128 LEdEklK~~E~MdS----FE~LkvENE~vkerl~m  158 (167)
T 4gkw_A          128 LENEKLKAAENMDS----FEKLSMENENLKEKIAH  158 (167)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHhhhhHhHHHHHHH
Confidence            55555444444433    45667777777677644

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=92.76  E-value=2.2  Score=37.25  Aligned_cols=84  Identities=18%  Similarity=0.222  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcch
Q 005704          424 KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQS  503 (682)
Q Consensus       424 ~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (682)
                      +++.|..++..+++-+.....++.+++..+.++..++++                                         
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~-----------------------------------------   63 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET-----------------------------------------   63 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Confidence            455666666666666666677777777777777766643                                         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 005704          504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQ  550 (682)
Q Consensus       504 siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~k  550 (682)
                        +|++..|-|=|+.--.--...--+...++..|..++..|+..|-+
T Consensus        64 --I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~  108 (110)
T 2v4h_A           64 --VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK  108 (110)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence              456667766666666555555555666666666666677665544

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.39  E-value=6.1  Score=35.66  Aligned_cols=29  Identities=24%  Similarity=0.291  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHH
Q 005704          119 YPALASIAEQDLKLSELESENRKMKIELEEYRTEATH  155 (682)
Q Consensus       119 ~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~  155 (682)
                      .|+|..+..-        .++.++..++..++..+..
T Consensus         3 KPLL~~~~~e--------~E~~~~~eel~~lke~l~k   31 (129)
T 2fxo_A            3 SPLLKSAERE--------KEMASMKEEFTRLKEALEK   31 (129)
T ss_dssp             HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhhhhH--------HHHHHHHHHHHHHHHHHHH
Confidence            5888775442        2555555566555555544

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=92.31  E-value=1  Score=49.33  Aligned_cols=52  Identities=17%  Similarity=0.149  Sum_probs=41.1

Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704          415 EHELT-QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS  466 (682)
Q Consensus       415 ~~eLt-~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~  466 (682)
                      -++++ +||..+..++.+++..-..+..|+.-|+++...|++||.||......
T Consensus       108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs  160 (562)
T 3ghg_A          108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS  160 (562)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555 77777888888877777888888889999999999999999866543

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=89.80  E-value=7.1  Score=34.37  Aligned_cols=69  Identities=14%  Similarity=0.121  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          207 EQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ  282 (682)
Q Consensus       207 e~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~  282 (682)
                      .++|..+...+...+..++.++...+.+.       .......+.|+..++..-+....++.+||..|+.|-..--
T Consensus         5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~-------~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R   73 (111)
T 2v66_B            5 NRDLQADNQRLKYEVEALKEKLEHQYAQS-------YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR   73 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            34444444444444444444444333221       1123445677777777777777777888877777765533

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=89.74  E-value=13  Score=34.68  Aligned_cols=16  Identities=31%  Similarity=0.495  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 005704          202 ILQEREQALQDQLRQA  217 (682)
Q Consensus       202 ~~~ere~~L~~ql~~a  217 (682)
                      .++++.+.|..++.++
T Consensus        74 ~yEeqIk~L~~kLKEA   89 (155)
T 2efr_A           74 KYEEEIKVLSDKLKEA   89 (155)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333443333333

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=89.70  E-value=5.1  Score=39.44  Aligned_cols=51  Identities=14%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             hccCCCCHHHHHHHHHHHhh-hhhhHHhhHHHHHHHHHHHHHHHHhhhhHHH
Q 005704          112 LYEAPDPYPALASIAEQDLK-LSELESENRKMKIELEEYRTEATHLKNQQST  162 (682)
Q Consensus       112 L~eaPDP~PlLe~s~~~~~~-~~~le~E~~kL~~el~~l~~el~~lknq~~~  162 (682)
                      |..+|||..++....+.... ++.++.++..|..++.+++.++.++..|...
T Consensus       113 L~~~~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~  164 (213)
T 1ik9_A          113 LEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEK  164 (213)
T ss_dssp             CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55678998874333343322 2346667777777777777777776655443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=89.69  E-value=9.3  Score=32.96  Aligned_cols=64  Identities=16%  Similarity=0.184  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNERE  332 (682)
Q Consensus       253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~  332 (682)
                      |.++..|.|.|..|+..++..+..+.....                  ..+.++.++.+.+..++.++...+..|.....
T Consensus        11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~------------------~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~   72 (101)
T 3u1c_A           11 MQMLKLDKENALDRAEQAEADKKAAEERSK------------------QLEDDIVQLEKQLRVTEDSRDQVLEELHKSED   72 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777777777777776666655533                  34445555566677777777766666655444


Q ss_pred             HH
Q 005704          333 QH  334 (682)
Q Consensus       333 ~~  334 (682)
                      .+
T Consensus        73 kL   74 (101)
T 3u1c_A           73 SL   74 (101)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.54  E-value=8.3  Score=43.21  Aligned_cols=39  Identities=15%  Similarity=0.275  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 005704          251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG  289 (682)
Q Consensus       251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~  289 (682)
                      .|++.+...++..+.++.++.+++..++.++.+......
T Consensus       544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~  582 (597)
T 3oja_B          544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN  582 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            556666777777777888888888888888777665553

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=89.52  E-value=9.9  Score=35.14  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704          253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA  288 (682)
Q Consensus       253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~  288 (682)
                      +.++..||+++..|+..++..+..|..+|..++...
T Consensus        82 l~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nl  117 (147)
T 2b9c_A           82 LVIIESDLERAEERAELSEGKCAELEEELKTVTNNL  117 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999998766654

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=89.38  E-value=3.5  Score=37.24  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=58.7

Q ss_pred             hchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704          400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (682)
Q Consensus       400 ~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~  465 (682)
                      ..+||..|.+...+...++..++..+..++..+..+..++.....+++.+-..--.|+..|.+...
T Consensus        59 ~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk  124 (129)
T 3tnu_B           59 CANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888899999999999999999999999999999999999999999888888889888887653

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=88.91  E-value=13  Score=33.49  Aligned_cols=52  Identities=17%  Similarity=0.307  Sum_probs=33.5

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLED  458 (682)
Q Consensus       407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~  458 (682)
                      |..+.-.|+..+..+...+.+.......+......+..++.+++.-+..+|.
T Consensus        74 L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~  125 (129)
T 2fxo_A           74 LIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL  125 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555556666667766666666666666666666666666666666655554

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.86  E-value=3.5  Score=37.33  Aligned_cols=65  Identities=12%  Similarity=0.151  Sum_probs=58.0

Q ss_pred             hchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704          400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY  464 (682)
Q Consensus       400 ~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~  464 (682)
                      ..+||..|.+...++..++..++..+..++..+..+..++.....+++.+-..--.|+..|.+..
T Consensus        61 ~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYR  125 (131)
T 3tnu_A           61 KASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYR  125 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788889999999999999999999999999999999999999999988888888888887765

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.27  E-value=2.8  Score=37.99  Aligned_cols=54  Identities=13%  Similarity=0.199  Sum_probs=28.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005704          308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQA  361 (682)
Q Consensus       308 ~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~  361 (682)
                      .++.++..+...+..|+.++.+....+..++..++..+..+...+..++...+.
T Consensus        49 ~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~  102 (131)
T 3tnu_A           49 NLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQ  102 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555555555555555555555555555555555555444444443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.07  E-value=12  Score=32.09  Aligned_cols=21  Identities=14%  Similarity=0.183  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 005704          264 QTRLLSLQREKDLLRSQLQSA  284 (682)
Q Consensus       264 ~~R~~~LE~e~E~Lr~eL~~a  284 (682)
                      +..-..++.+|++|+.+|...
T Consensus        75 r~e~~~~e~kn~~L~~qL~d~   95 (97)
T 2eqb_B           75 RKEKYAIEILNKRLTEQLREK   95 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            444567899999999999764

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=86.60  E-value=21  Score=33.31  Aligned_cols=55  Identities=15%  Similarity=0.199  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 005704          313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA  380 (682)
Q Consensus       313 i~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~  380 (682)
                      +..|+.++.+++..|...+..+......|...+..+..    +         .+++..+..++.-|+.
T Consensus       100 v~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~----~---------~~~~~~~~~~~~~~~~  154 (155)
T 2efr_A          100 VTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE----L---------LSKNYHLENEVARLKK  154 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c---------ccchHHHHHHHHHhhc
Confidence            44455555555555555555555444455444433321    1         2456666666666653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.41  E-value=7.7  Score=43.49  Aligned_cols=59  Identities=10%  Similarity=0.008  Sum_probs=32.0

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704          408 LDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS  466 (682)
Q Consensus       408 l~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~  466 (682)
                      ...+.+.+.+..........++.+...++..+......+.++++.++.+..++......
T Consensus       522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~  580 (597)
T 3oja_B          522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK  580 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555543

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=86.38  E-value=4.9  Score=35.91  Aligned_cols=72  Identities=21%  Similarity=0.288  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 005704          308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV  381 (682)
Q Consensus       308 ~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~i  381 (682)
                      .+|..|..|..++..|...+..+.......+..|..++..+...++.-...++..  ..|-+.|+.++..|+..
T Consensus        12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a--~~e~e~Lr~e~~~l~~~   83 (120)
T 3i00_A           12 EKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQA--ADDCEFLRAELDELRRQ   83 (120)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            4466689999999999999999988898999999999999988888887776665  56889999999998764

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=85.68  E-value=6.7  Score=35.31  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          511 NQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (682)
Q Consensus       511 ~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~  546 (682)
                      .+...+...+..||.++.+.+..+...-.|+..|-.
T Consensus        75 ~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln  110 (129)
T 3tnu_B           75 LALKDARNKLAELEEALQKAKQDMARLLREYQELMN  110 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            456667778888888888888888777777766654

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=85.65  E-value=23  Score=32.94  Aligned_cols=32  Identities=16%  Similarity=0.140  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQL  281 (682)
Q Consensus       250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL  281 (682)
                      .-..+.|...+.....++..++..+..|+.=+
T Consensus       114 e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~  145 (154)
T 2ocy_A          114 EILNKRLTEQLREKDTLLDTLTLQLKNLKKVM  145 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555666666666666666544

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=85.65  E-value=6.4  Score=33.53  Aligned_cols=68  Identities=13%  Similarity=0.103  Sum_probs=45.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 005704          305 SLSAKEKIISELNSELHNIETALSNEREQ--------HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKK  374 (682)
Q Consensus       305 el~~ke~ei~~L~~e~~~Le~~L~~~r~~--------~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~E  374 (682)
                      .++.+=..|+.|+.+|..|+..+...+..        +...|..|..+++......+.++.++..+  +.|.+++|..
T Consensus        17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl--~~~~~~~k~K   92 (93)
T 3s4r_A           17 RFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNL--AEDIMRLREK   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhh
Confidence            35555455788888888888887766554        44566677777777766667776666665  4566666654

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=85.37  E-value=11  Score=41.57  Aligned_cols=24  Identities=17%  Similarity=0.066  Sum_probs=19.6

Q ss_pred             CChhhHHHHHHHHHHHHhccccCc
Q 005704          363 PTSKMVDDLRKKVKILQAVGYNSI  386 (682)
Q Consensus       363 ~~~sDyeelK~EL~~Lk~iEf~~~  386 (682)
                      .+..+|+++.++|..+-++.+-..
T Consensus       173 vd~~sY~~~QKQLeQv~a~dL~p~  196 (562)
T 3ghg_A          173 VDLKDYEDQQKQLEQVIAKDLLPS  196 (562)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             cchHHHHHHHHHHHHHhhcccCCc
Confidence            456799999999999998866543

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=84.61  E-value=11  Score=32.05  Aligned_cols=40  Identities=13%  Similarity=0.095  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704          424 KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG  463 (682)
Q Consensus       424 ~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~  463 (682)
                      +++.|...+...++-+......+.+++..+.+++.+++++
T Consensus         3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i   42 (94)
T 3jsv_C            3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV   42 (94)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777888888888888888888888888888877654

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=83.78  E-value=14  Score=30.45  Aligned_cols=21  Identities=19%  Similarity=0.218  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 005704          253 VNLLMDEVERAQTRLLSLQRE  273 (682)
Q Consensus       253 le~l~~DLEra~~R~~~LE~e  273 (682)
                      +..+..||+++..++.++...
T Consensus        50 iq~lE~eld~~ee~l~~a~~k   70 (81)
T 1ic2_A           50 LKGTEDELDKYSESLKDAQEK   70 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555444443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=82.95  E-value=14  Score=31.58  Aligned_cols=29  Identities=10%  Similarity=0.192  Sum_probs=23.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          501 DQSSMLKVICNQRDRFRARLRETEEEVRQ  529 (682)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~  529 (682)
                      ..+.|+.--...|..+..||..|..+|..
T Consensus        66 EAN~MVa~ar~e~~~~e~kn~~L~~qL~d   94 (97)
T 2eqb_B           66 EANNMVADARKEKYAIEILNKRLTEQLRE   94 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45666766688889999999999988864

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=82.94  E-value=16  Score=32.11  Aligned_cols=38  Identities=24%  Similarity=0.227  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704          250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE  287 (682)
Q Consensus       250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~  287 (682)
                      +..+..+..++...++.+.+++.++|.||.+-......
T Consensus        70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r  107 (121)
T 3mq7_A           70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR  107 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence            34466666666666777777777777777766544433

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=81.85  E-value=25  Score=30.46  Aligned_cols=39  Identities=23%  Similarity=0.359  Sum_probs=25.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTA  539 (682)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~  539 (682)
                      +-....+.|....+.+..++..|+.++.....++..++.
T Consensus        67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~  105 (117)
T 2zqm_A           67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA  105 (117)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677877777777766666666666665555555444

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=81.77  E-value=15  Score=30.54  Aligned_cols=66  Identities=8%  Similarity=0.093  Sum_probs=60.1

Q ss_pred             hchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704          400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS  465 (682)
Q Consensus       400 ~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~  465 (682)
                      ..+||..|.+...++..++..++..+..++..+..+..++.....+++.+-...-.|+..+.+...
T Consensus        10 ~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRk   75 (84)
T 1gk4_A           10 NESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK   75 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999999998999999887763

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=81.75  E-value=16  Score=30.01  Aligned_cols=62  Identities=23%  Similarity=0.287  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNERE  332 (682)
Q Consensus       253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~  332 (682)
                      |..+..|++.|..|+..++..+........                  ..+.++..+.+.|..|+.++...+..|.....
T Consensus         8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~------------------~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~   69 (81)
T 1ic2_A            8 MQMLKLDKENALDRAEQAEADKKAAEERSK------------------QLEDELVALQKKLKGTEDELDKYSESLKDAQE   69 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666677777777666666666555443                  33444555555677777776666665544433

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=81.60  E-value=22  Score=30.29  Aligned_cols=39  Identities=8%  Similarity=0.218  Sum_probs=28.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTA  539 (682)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~  539 (682)
                      +-....|.|....+-...++..|+.++.....++..++.
T Consensus        62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~  100 (107)
T 1fxk_A           62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV  100 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566778888888777777777777777666666665554

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=81.50  E-value=24  Score=30.08  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          207 EQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA  240 (682)
Q Consensus       207 e~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~  240 (682)
                      -..+..++-.....+..+.+.+..++.+|.-|+.
T Consensus        62 yn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K   95 (96)
T 3q8t_A           62 YSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK   95 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3566778888888888999999988888887764

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.21  E-value=38  Score=31.47  Aligned_cols=41  Identities=15%  Similarity=0.269  Sum_probs=31.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704          247 VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE  287 (682)
Q Consensus       247 ~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~  287 (682)
                      ..+.+|+.-++.+|...+.+-..+|.+...+..+|+..+.+
T Consensus        54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas   94 (154)
T 2ocy_A           54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS   94 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888888888888888888888888888888765544

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=80.13  E-value=8.4  Score=32.05  Aligned_cols=50  Identities=14%  Similarity=0.256  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005704          313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQAR  362 (682)
Q Consensus       313 i~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~  362 (682)
                      +..+.+.+..|+.++.+....+..++..++..+..+...+..++...+.+
T Consensus         3 l~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q   52 (84)
T 1gk4_A            3 VDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARH   52 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667777778888777777777777777777777666666666665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	682
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	90.2
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	84.18

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.20  E-value=2.5  Score=35.93  Aligned_cols=118  Identities=17%  Similarity=0.205  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccc-ccccccccC-
Q 005704          417 ELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGT-ELSEKADKK-  494 (682)
Q Consensus       417 eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-  494 (682)
                      .|.+|..+.+.++..++.++.++..++..+.+....+..|+.    +....        +..++++.+. -.+++.-.. 
T Consensus         2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~----l~~~~--------~~e~lvplg~~~~v~~~i~~~   69 (133)
T d1fxkc_           2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD----IQGKD--------GSETLVPVGAGSFIKAELKDT   69 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCT--------TCEEEEEEETTEEEEEECCST
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCC--------CCeEEEEcCCceEEEEEecCC
Confidence            356677777777778888888888888877777777777663    22111        1111111000 001100000 


Q ss_pred             -------CCC--CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704          495 -------HTY--PDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA  546 (682)
Q Consensus       495 -------~~~--~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~  546 (682)
                             |.+  ..-+...-+.++....+.++..+..|..++......+..+..++..+.+
T Consensus        70 ~~vlV~lG~g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~  130 (133)
T d1fxkc_          70 SEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA  130 (133)
T ss_dssp             TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEecCCeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   000  0124556788888888888888888888888888888888888777654

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.18  E-value=8.2  Score=31.35  Aligned_cols=43  Identities=7%  Similarity=0.249  Sum_probs=33.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704          501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK  543 (682)
Q Consensus       501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~  543 (682)
                      +-..+.|.|....+-+..++..|+.++.....++..++..+..
T Consensus        62 ~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~  104 (107)
T d1fxka_          62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677889888888888888888888888777777777766543