Citrus Sinensis ID: 005721

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-
MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQS
cccccccHHHHHHHHHHHHHHHHHHccccccEEcccccccHHHHcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHHccccEEEEEcccccEEEEEEccccEEEEEEccEEEEEEEcccccccccEEEEEEEEccccccEEEEEEEcccccccccEEEEEccEEccccccccEEEEEEEEccccEEEEEEccEEEEEEccccccccccEEEEEEccccEEcccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEccccEEEEEEccccccccEEEEEEEEEcccccccccccccccccccccccccccccEEEEccccccEEEEcccccccccEEEEEccccccccEEEEEEcccccEEEEEEEcccccccEEEEEEEcccccccccEEEEEEcccccccccccEEEEcccccEEEccccccccccEEEEEEEcc
cccccccHHHHHHHHHHHHHHHHHHHHccccEEccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHccccHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHcccHHHccHHHHcccccccccccccccEEEEHHHHHHHcccHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccccEEEccccccccHcccccEEEEEccccccEEEEEEEEccEEEEccccEEEEEEEcccccccccEEEEEEEcccccccEEEEEEEcccccccccEEEEEccEEEEccccccEEEEEEEcccccEEEEEEcccEEEEEccccccccccEEEEEEccEEEEEcccccccccccccccccccccccccccccEEEccccccccEEEEcccccccccEcccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccEEEEEccccccccEEEEEEccccccEEEEEcccccccEEEEEccccccHHHHHHHHHHHHcccccccccEEEEEccccccEccccHHccccccEEEEEEccc
mwasthneSLKEKMSAVVSALSACQKEigsgylsafpteQFDRLEalipvwapyyTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLahlfdkpcfLGLLAlqaddisgfhsnthipivigsqmryevtgDQLHKTISMFFMDIVnsshtyatggtsvgefwsdpkrlasnldsnteescTTYNMLKVSRHLFRWTKEIAYADYYErsltngvlgiqrgtepgvmiyllplapgsskersyhhwgtpsdsfwccygtgiesfsklgdsiyfeeegkypgVYIIQYISSrldwksgqivvnqkvdpvvswdpylrVTLTfsskgsglttslnlriptwtssngakatlngqdlplpspgnflsvtktwssddkltiqlpltlrteaiqddrpeyaSIQAILYgpyvlaghsigdwditesatslsdwitpipasynsqLITFTQeygntkfvltnsnqsitmekfpksgtdAALHATFRLILndssgsefsslndfigksvmlepfdspgmlviqhetddelvvtdsfiaqgsSVFHLVAGldggdrtvslesetykGCFVYTAVnlqssestklgcisesteagfnNAASFVIEkglseyhpisfvakganrnFLLApllslrdesytvyfdfqs
mwasthneslkEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLAsnldsnteescTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKvdpvvswdpYLRVTLtfsskgsglttslNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPllslrdesyTVYFDFQS
MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQS
****************VVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSD**************SCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGS**ERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWT********************NFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITM*******TDAALHATFRLILNDS***EFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDF**
MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSS*************SVMLEPFDSPGMLVIQHETD****************FHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQS
*******************ALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAP*********HWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQS
****THNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQS
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MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPASYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query681
224053368 858 predicted protein [Populus trichocarpa] 1.0 0.793 0.736 0.0
225435510 864 PREDICTED: uncharacterized protein LOC10 0.997 0.785 0.729 0.0
224075776 858 predicted protein [Populus trichocarpa] 0.997 0.791 0.730 0.0
359478753 874 PREDICTED: uncharacterized protein LOC10 1.0 0.779 0.713 0.0
297746368741 unnamed protein product [Vitis vinifera] 1.0 0.919 0.713 0.0
449448754 868 PREDICTED: uncharacterized protein LOC10 0.998 0.783 0.681 0.0
356541912 854 PREDICTED: uncharacterized protein LOC10 0.991 0.790 0.676 0.0
356541181 854 PREDICTED: uncharacterized protein LOC10 0.991 0.790 0.674 0.0
356557388 841 PREDICTED: uncharacterized protein LOC10 0.973 0.788 0.657 0.0
15239944 861 uncharacterized protein [Arabidopsis tha 0.995 0.787 0.640 0.0
>gi|224053368|ref|XP_002297785.1| predicted protein [Populus trichocarpa] gi|222845043|gb|EEE82590.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1063 bits (2749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/683 (73%), Positives = 586/683 (85%), Gaps = 2/683 (0%)

Query: 1   MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKI 60
           MWASTHN+ L+++MSAVVSALS+CQ+++GSGYLSAFP+E FDR EA+ PVWAPYYTIHKI
Sbjct: 176 MWASTHNDILEKQMSAVVSALSSCQEKMGSGYLSAFPSELFDRFEAIKPVWAPYYTIHKI 235

Query: 61  LAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYK 120
           LAGLLDQYT+ADNA+AL+M  WMV+YFYNRV+NVI  +S+ERH+Q+LNEE GGMNDVLYK
Sbjct: 236 LAGLLDQYTFADNAQALKMVKWMVDYFYNRVRNVITNFSVERHYQSLNEETGGMNDVLYK 295

Query: 121 LFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLH 180
           LF IT DPKHL+LAHLFDKPCFLGLLA+QA+DISGFH+NTHIPIVIG+QMRYE+TGD L+
Sbjct: 296 LFSITGDPKHLVLAHLFDKPCFLGLLAVQAEDISGFHANTHIPIVIGAQMRYEITGDPLY 355

Query: 181 KTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFR 240
           K I  FFMDIVNSSH+YATGGTSV EFWSDPKRLAS L +  EESCTTYNMLKVSRHLFR
Sbjct: 356 KDIGTFFMDIVNSSHSYATGGTSVSEFWSDPKRLASTLQTENEESCTTYNMLKVSRHLFR 415

Query: 241 WTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCC 300
           WTKE+AYADYYER+LTNGVLGIQRGTEPGVMIY+LP  PGSSK +SYH WGT  D+FWCC
Sbjct: 416 WTKEMAYADYYERALTNGVLGIQRGTEPGVMIYMLPQHPGSSKGKSYHGWGTLYDTFWCC 475

Query: 301 YGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLR 360
           YGTGIESFSKLGDSIYFEEEG+ PG+YIIQYISS LDWKSGQI++NQKVDPVVS DPYLR
Sbjct: 476 YGTGIESFSKLGDSIYFEEEGEAPGLYIIQYISSSLDWKSGQIMINQKVDPVVSSDPYLR 535

Query: 361 VTLTFS-SKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKL 419
           VT TFS +KGS   ++LNLRIP WT  +GA AT+N Q L +P+PG+FLSV + WSS DKL
Sbjct: 536 VTFTFSPNKGSSQASTLNLRIPVWTHLDGATATINSQSLAIPAPGSFLSVNRKWSSGDKL 595

Query: 420 TIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITE-SATSLSDWITPIPA 478
           ++QLP++LRTEAIQDDR +YASIQAILYGPY+LAGH+ GDW++   SA SLSD ITPIPA
Sbjct: 596 SLQLPISLRTEAIQDDRHQYASIQAILYGPYLLAGHTSGDWNLKAGSAGSLSDSITPIPA 655

Query: 479 SYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSL 538
           SYN QL++F+Q+ GN+ FVLTNSNQSITME+ PKSGTDA L ATFR++ NDSS SE   +
Sbjct: 656 SYNEQLVSFSQDSGNSTFVLTNSNQSITMEEHPKSGTDACLQATFRIVFNDSSSSEVLGI 715

Query: 539 NDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLES 598
           ND I KSVMLEPFD PGML++Q   D  L VT+S    GSS+FH+V GLDG D TVSLES
Sbjct: 716 NDVIDKSVMLEPFDLPGMLLVQQGKDSSLAVTNSAADDGSSIFHVVLGLDGKDGTVSLES 775

Query: 599 ETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANR 658
            + +GC++Y+ VN +S +S KL C   S++ GFN  ASFV+ KGLSEYHPISFVA+G  R
Sbjct: 776 GSQEGCYIYSGVNYKSGQSMKLSCKLGSSDPGFNQGASFVMNKGLSEYHPISFVAEGDKR 835

Query: 659 NFLLAPLLSLRDESYTVYFDFQS 681
           NFLLAPL SLRDE YT+YF+ Q+
Sbjct: 836 NFLLAPLHSLRDEFYTIYFNIQA 858

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225435510|ref|XP_002285548.1| PREDICTED: uncharacterized protein LOC100246702 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224075776|ref|XP_002304762.1| predicted protein [Populus trichocarpa] gi|222842194|gb|EEE79741.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359478753|ref|XP_002283032.2| PREDICTED: uncharacterized protein LOC100250068 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297746368|emb|CBI16424.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449448754|ref|XP_004142130.1| PREDICTED: uncharacterized protein LOC101207833 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356541912|ref|XP_003539416.1| PREDICTED: uncharacterized protein LOC100783150 [Glycine max] Back     alignment and taxonomy information
>gi|356541181|ref|XP_003539059.1| PREDICTED: uncharacterized protein LOC100781521 [Glycine max] Back     alignment and taxonomy information
>gi|356557388|ref|XP_003546998.1| PREDICTED: uncharacterized protein LOC100815634 [Glycine max] Back     alignment and taxonomy information
>gi|15239944|ref|NP_196799.1| uncharacterized protein [Arabidopsis thaliana] gi|7630051|emb|CAB88259.1| putative protein [Arabidopsis thaliana] gi|26451123|dbj|BAC42665.1| unknown protein [Arabidopsis thaliana] gi|332004451|gb|AED91834.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query681
TAIR|locus:2182280861 AT5G12950 [Arabidopsis thalian 0.995 0.787 0.640 5.5e-244
TAIR|locus:2182295865 AT5G12960 [Arabidopsis thalian 0.995 0.783 0.640 8e-243
UNIPROTKB|Q2KGY9633 MGCH7_ch7g196 "Putative unchar 0.660 0.710 0.340 1e-61
TAIR|locus:2182280 AT5G12950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2351 (832.7 bits), Expect = 5.5e-244, P = 5.5e-244
 Identities = 438/684 (64%), Positives = 542/684 (79%)

Query:     1 MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKI 60
             MWASTHN++LKEKMSA+VSALS CQ++ G+GYLSAFP+  FDR EA+ PVWAPYYTIHKI
Sbjct:   181 MWASTHNDTLKEKMSALVSALSECQQKSGTGYLSAFPSSFFDRFEAITPVWAPYYTIHKI 240

Query:    61 LAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYK 120
             LAGL+DQY  A N++AL+M T M +YFY RV+NVI+KYS+ERHWQ+LNEE GGMNDVLY+
Sbjct:   241 LAGLVDQYKLAGNSQALKMATGMADYFYGRVRNVIRKYSVERHWQSLNEETGGMNDVLYQ 300

Query:   121 LFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLH 180
             L+ IT D K+L+LAHLFDKPCFLG+LA+QADDISGFH+NTHIPIV+GSQ RYE+TGD LH
Sbjct:   301 LYSITGDSKYLLLAHLFDKPCFLGVLAIQADDISGFHANTHIPIVVGSQQRYEITGDLLH 360

Query:   181 KTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFR 240
             K ISMFFMDI N+SH+YATGGTSV EFW DPKR+A+ L +  EESCTTYNMLKVSR+LFR
Sbjct:   361 KEISMFFMDIFNASHSYATGGTSVSEFWQDPKRMATALQTENEESCTTYNMLKVSRNLFR 420

Query:   241 WTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCC 300
             WTKE++YADYYER+LTNGVLGIQRGT+PG+MIY+LPL  G SK  +YH WGTP DSFWCC
Sbjct:   421 WTKEVSYADYYERALTNGVLGIQRGTQPGLMIYMLPLGKGVSKAVTYHGWGTPYDSFWCC 480

Query:   301 YGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLR 360
             YGTGIESFSKLGDSIYF+E+G  P +Y+ QYISS LDWKS  + ++QKV+PVVSWDPY+R
Sbjct:   481 YGTGIESFSKLGDSIYFQEDGATPALYVTQYISSSLDWKSAGLSISQKVNPVVSWDPYMR 540

Query:   361 VTLTFSSKGSGLT--TSLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDK 418
             VT T SS   G+   ++LNLRIP WT+S GAK +LNG+ L +P+ GNFLS+ + W S D+
Sbjct:   541 VTFTLSSSKVGVAKESTLNLRIPVWTNSIGAKVSLNGRPLNVPTSGNFLSIKQKWKSGDQ 600

Query:   419 LTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSIGDWDITESATSLSDWITPIPA 478
             +T++LP+++RTEAI+DDRPEYAS+QAILYGPY+LAGH+  DW IT  A     WITPIP 
Sbjct:   601 VTMELPMSIRTEAIKDDRPEYASLQAILYGPYLLAGHTSRDWSITTQAKP-GKWITPIPE 659

Query:   479 SYNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSL 538
             + NS L+T +Q+ GN  +V +NSNQ+ITM   P+ GT  A+ ATFRL+  D+S    S  
Sbjct:   660 TQNSYLVTLSQQSGNVSYVFSNSNQTITMRVSPEPGTQDAVAATFRLV-TDNSKPRISGP 718

Query:   539 NDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFIA-QGSSVFHLVAGLDGGDRTVSLE 597
                IG+ VMLEPFD PGM+V Q  TD  L V  S  + +G+S F LV+GLDG   +VSL 
Sbjct:   719 EGLIGRLVMLEPFDFPGMIVKQ-ATDSSLTVQASSPSDKGASSFRLVSGLDGKLGSVSLR 777

Query:   598 SETYKGCFVYTAVNLQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGAN 657
              E+ KGCFVY+   L+     +L C S++T+  F  AASF ++ G+ +Y+P+SFV  G  
Sbjct:   778 LESKKGCFVYSDQTLKQGTKLRLECGSDATDEKFKEAASFSLKTGMHQYNPMSFVMSGTQ 837

Query:   658 RNFLLAPLLSLRDESYTVYFDFQS 681
             RNF+L+PL SLRDE+Y VYF  Q+
Sbjct:   838 RNFVLSPLFSLRDETYNVYFSVQT 861
GO:0003824 "catalytic activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005773 "vacuole" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
TAIR|locus:2182295 AT5G12960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KGY9 MGCH7_ch7g196 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_I0347
hypothetical protein (858 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XVI.1041.1
hypothetical protein (662 aa)
  •     0.455
estExt_fgenesh4_pm.C_LG_VI0086
hypothetical protein (670 aa)
  •     0.449
estExt_fgenesh4_pg.C_LG_X0561
alpha-galactosidase (EC-3.2.1.22) (649 aa)
  •     0.408
gw1.VIII.287.1
annotation not avaliable (630 aa)
  •     0.403
gw1.X.5154.1
annotation not avaliable (619 aa)
  •     0.401

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query681
pfam07944511 pfam07944, DUF1680, Putative glycosyl hydrolase of 1e-137
COG3533589 COG3533, COG3533, Uncharacterized protein conserve 1e-53
>gnl|CDD|219654 pfam07944, DUF1680, Putative glycosyl hydrolase of unknown function (DUF1680) Back     alignment and domain information 
 Score =  412 bits (1062), Expect = e-137
 Identities = 159/459 (34%), Positives = 234/459 (50%), Gaps = 25/459 (5%)

Query: 1   MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAP---YYTI 57
           M AST +  L++++  +V  L+  Q+  G GYL  +P   FDR EA    WAP    Y +
Sbjct: 72  MLASTPDPELEKRLDRLVDELAEAQQ--GDGYLGTYPESNFDRNEAGNGRWAPNHELYNL 129

Query: 58  HKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDV 117
            K++AGL+  Y      +AL + T + ++ Y+ V +V+    +++H      E GG+N+ 
Sbjct: 130 GKLIAGLVAYYQATGKRQALDVATRLADWLYD-VTSVLGDEQMQKHLYP---EHGGINEA 185

Query: 118 LYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVI-GSQMRYEVTG 176
           L +L+ +T D ++L LA  F     L  LA   D + G H NT I   + G+   YE TG
Sbjct: 186 LVELYELTGDKRYLDLAKRFIHNRGLDPLAYGQDHLPGRHQNTAIGHAVRGAADLYEETG 245

Query: 177 DQLHKTISMFFMDIVNSSHTYATGGTSVG-EFWSDPKRLASNLDSNTEESCTTYNMLKVS 235
           D      + FF + V + H Y TGG     E +  P  L +       E+C +YNMLK++
Sbjct: 246 DDALLKAAEFFWNNVVTRHMYVTGGNGSRHEHFGPPYDLPN--RLAYCETCASYNMLKLT 303

Query: 236 RHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSD 295
           R +  WT +  YADYYER+L N +L  Q   + G+  Y  PL  G  + R    + TP D
Sbjct: 304 RRMLEWTPDAKYADYYERALYNHILAGQSP-DGGMFFYFNPLESGPKRLR--WGYSTPWD 360

Query: 296 SFWCCYGTGIESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSW 355
           S WCC G G E+ +K GD IY   +    G+Y+  YI S  DWK     V  + +    W
Sbjct: 361 SCWCCPGNGAETHAKFGDYIYTHSD---DGLYVNLYIPSTADWKLKGGEVTLRQETNYPW 417

Query: 356 DPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQ-DLPLPSPGNFLSVTKTWS 414
           D   +V LT  +      T L LRIP W +  GA  T+NG+  +  P    +LS+T+ W 
Sbjct: 418 DG--QVRLTVKTAKPAEFT-LYLRIPGWAA--GATLTVNGKPVVVQPKSDGYLSITREWK 472

Query: 415 SDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLA 453
             D++ + LP+ +R EA     P+ A+  A+L GP VL 
Sbjct: 473 KGDRVELTLPMPVRLEAANPLVPDDANKVAVLRGPLVLC 511

The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One members of this family is annotated as a possible arabinosidase, but no references were found to back this. These proteins are related to a large family of glycosyl hydrolases. Length = 511
>gnl|CDD|226063 COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 681
COG3533589 Uncharacterized protein conserved in bacteria [Fun 100.0
PF07944520 DUF1680: Putative glycosyl hydrolase of unknown fu 100.0
PF05270142 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterP 99.63
PF05270142 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterP 99.27
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 98.73
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 98.33
PF07944520 DUF1680: Putative glycosyl hydrolase of unknown fu 98.06
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 97.94
COG1331667 Highly conserved protein containing a thioredoxin 97.62
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 97.56
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 97.46
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 97.38
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 97.27
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 96.87
PTZ00470522 glycoside hydrolase family 47 protein; Provisional 96.7
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 96.53
COG1331667 Highly conserved protein containing a thioredoxin 96.47
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 96.35
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 96.26
PF01532452 Glyco_hydro_47: Glycosyl hydrolase family 47; Inte 95.82
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 95.67
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 95.51
COG3533589 Uncharacterized protein conserved in bacteria [Fun 95.32
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 95.19
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 95.06
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 95.04
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 94.56
PF06662189 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; I 94.49
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 94.45
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 93.86
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 93.34
PF06662189 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; I 91.84
KOG2787403 consensus Lanthionine synthetase C-like protein 1 91.48
PF01532452 Glyco_hydro_47: Glycosyl hydrolase family 47; Inte 90.79
COG2942388 N-acyl-D-glucosamine 2-epimerase [Carbohydrate tra 90.65
PF00759444 Glyco_hydro_9: Glycosyl hydrolase family 9; InterP 89.84
PLN02345469 endoglucanase 85.16
PF06917557 Pectate_lyase_2: Periplasmic pectate lyase; InterP 83.6
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-98  Score=801.86  Aligned_cols=425  Identities=25%  Similarity=0.439  Sum_probs=385.4

Q ss_pred             CcccCCchHHHHHHHHHHHHHHHhhhhCCCceeeccCCchh--hhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHH
Q 005721            1 MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQF--DRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALR   78 (681)
Q Consensus         1 mya~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~~~~--~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~   78 (681)
                      +++.++|++|.+++|++|+++++.|+  +||||+++....|  .||.+++..|+.|+.+| +++|++|+|++||+.++|+
T Consensus        78 ~l~~~~dp~Lekr~D~vi~~~a~~Qd--edGYl~~~~q~~~pe~Rw~nlr~~HelY~agh-Lieg~va~~qaTGkr~lld  154 (589)
T COG3533          78 SLANKGDPELEKRIDEVVEELARAQD--EDGYLGGWFQADFPEERWGNLRPNHELYCAGH-LIEGGVAAHQATGKRRLLD  154 (589)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhhc--cCCcccceeeccCchhhhhccccchHHHHhHH-HHhhhhHHHHhhCcchHHH
Confidence            36789999999999999999999999  9999999886433  58889999999666555 5567779999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHhcCCHHHHHHHhhccccccchhhhhcCCCCCCCcc
Q 005721           79 MTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHS  158 (681)
Q Consensus        79 va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f~~~~~~~~l~~~~D~l~g~Ha  158 (681)
                      |++++|||+.+.+++...       +.++-+++++|+++|++||++|||+|||+||++|.+++..+|++.+.|.+.+.||
T Consensus       155 V~~rlADhi~tvfgp~~~-------q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHA  227 (589)
T COG3533         155 VVCRLADHIATVFGPEED-------QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHA  227 (589)
T ss_pred             HHHHHHHhhhhhcCcccc-------ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhH
Confidence            999999999988776422       3345578888999999999999999999999999999999999988899999999


Q ss_pred             cCccccchHHHHHHHHhCChHHHHHHHHHHHHhhccceeeecCCCC-CCCCCCCcccccCCCCCcccchhhHHHHHHHHH
Q 005721          159 NTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSV-GEFWSDPKRLASNLDSNTEESCTTYNMLKVSRH  237 (681)
Q Consensus       159 nthiP~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~tGG~s~-~E~f~~p~~l~~~l~~~~~EtCas~nmlkl~~~  237 (681)
                      +++||+.+|+|++|+++||+.+++++.+||++|+++|+|+|||+|+ +|+|+.+|+|++  .+.|+|||+|||||||+++
T Consensus       228 vr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn--~~~yAEtCas~~l~~~a~R  305 (589)
T COG3533         228 VRQIYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPN--RTAYAETCASYNLLKLARR  305 (589)
T ss_pred             HHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCcc--cchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999965 599999999998  5799999999999999999


Q ss_pred             HhcccCCchhHHHHHHHHhhhcccccCCCCCCeEEEecCCCCCCCCCcCCCCCCCCCCCccccCCCccCcccccccceEE
Q 005721          238 LFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYF  317 (681)
Q Consensus       238 Lf~~tgd~~YaD~~EralyN~ila~q~~~~~g~~~Y~~pl~~g~~k~~~~~~~~~~~~~f~CC~gtg~e~~~kl~~~iY~  317 (681)
                      ||.+++|.+|||+|||+|||++|++|++ |+++|+|+|||..+..      +.+.++++||||.||++|.+++++++||.
T Consensus       306 ml~~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~gr------h~r~~w~~c~CCppn~ar~~as~g~yiY~  378 (589)
T COG3533         306 MLGWGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGR------HSRQKWFSCWCCPPNGARSVASIGDYIYT  378 (589)
T ss_pred             HhccCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCC------ccccccccCCCCCCcHhhhhhhccceEEc
Confidence            9999999999999999999999999997 9999999999986542      12457788999999999999999999999


Q ss_pred             eecCCCCcEEEEEeeCcEEEeeeCceEEEEEeCCCCCCCCceEEEEEEEeCCCCeeeEEEEeccCCccCCCcEEEECCee
Q 005721          318 EEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQD  397 (681)
Q Consensus       318 ~~~~~~~~LyVnLYipS~l~~~~~gv~v~q~t~~~yp~~~~~~V~itv~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~  397 (681)
                      ..+   ++||||||+.|+++.+..++.|+|+|+  |||++  +|+|+|... .+.+|+|+||||+||.  .++++|||+.
T Consensus       379 ~~~---d~lyvnLy~~S~~~l~~~~v~irqet~--yPw~g--~v~ltv~~~-~p~~~tlaLRlP~W~a--~~tl~vNG~~  448 (589)
T COG3533         379 RAD---DALYVNLYIASTADLPGDDVQIRQETN--YPWSG--QVKLTVERA-QPVLFTLALRLPAWCA--APTLRVNGKE  448 (589)
T ss_pred             cCC---CEEEEEEeecccccccccceEEEeccC--CCCcC--eeEEEEecC-CCceEEEEEecccccC--CcEEEEcCcc
Confidence            976   689999999999999988899999887  99999  999999985 7899999999999999  7999999987


Q ss_pred             cCCCCCCCEEEEEeecCCCCEEEEEecceeEEEecCCCcccccCeEEEeecceeeeeecc
Q 005721          398 LPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSI  457 (681)
Q Consensus       398 ~~~~~~ggy~~I~R~W~~GD~V~L~LPm~lr~~~~~d~~~~~~~~vAv~rGPlVlA~~~~  457 (681)
                      +.....+||++|+|+|++||+|+|.|||++|+...|+++.. .+  ||+|||||||++..
T Consensus       449 ~~~~~~~GYa~i~R~Wq~GDrV~L~LpM~vr~y~nP~~r~~-~G--Ai~rGPlVyc~e~~  505 (589)
T COG3533         449 VIQTRGKGYARISREWQAGDRVELMLPMPVRIYANPDVRHD-VG--AIMRGPLVYCAEAG  505 (589)
T ss_pred             hhhccCCCeeeeeehhcCCCeEEEeecceeEeecCCcchhh-hh--hhhcCCeEEEEecC
Confidence            77677899999999999999999999999998888887644 12  99999999998654

>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins Back     alignment and domain information
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region Back     alignment and domain information
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02345 endoglucanase Back     alignment and domain information
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query681
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
3kmv_A157 Alpha-L-arabinofuranosidase B; protein:carboydrate 9e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 75/515 (14%), Positives = 147/515 (28%), Gaps = 135/515 (26%)

Query: 217 NLDSNTEESCTTYN-MLKVSRHLFRWTKEIAYADYYERS-LTNGVLGIQRGTEPGVMIYL 274
           ++D  T E    Y  +L V    F    +        +S L+   +           I +
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH---------IIM 56

Query: 275 LPLAPGSSKERSYHHWGTPSDSFWCC--YGT-GIESFSKLGDSI---Y------FEEEGK 322
                  +   +          FW         ++ F  + + +   Y       + E +
Sbjct: 57  SK----DAVSGTLR-------LFWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQR 103

Query: 323 YPGVYIIQYISSRLD--WKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSL-NLR 379
            P +    YI  R D  +   Q+        V    PYL+           L  +L  LR
Sbjct: 104 QPSMMTRMYIEQR-DRLYNDNQVFAK---YNVSRLQPYLK-----------LRQALLELR 148

Query: 380 IPTWTSSNG---------AKATLNGQDLPLPSPGN-F-LSVTKTWSSDDKLTIQLPLTLR 428
                  +G         A        +        F L++    S +  L +   L  +
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 429 TEAIQDDRPEYASIQAILYGPYVLAGHSIGDW--------DITESATSLSD-WITPIPAS 479
            +     R +++S          L  HSI                   L +        +
Sbjct: 209 IDPNWTSRSDHSS-------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 480 YNSQ---LITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGS--- 533
           +N     L+T T+    T F+   +   I+++    + T   + +     L+        
Sbjct: 262 FNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 534 EFSSLNDF----IGKSV--MLEPFDSPGMLVIQHETDDELV-VTDSFIAQGSSVFHLVAG 586
           E  + N      I +S+   L  +D+      +H   D+L  + +S +            
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDN-----WKHVNCDKLTTIIESSLNV---------- 365

Query: 587 LDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCISEST-EAGFNNAASFVIEKGLSE 645
                    LE   Y+  F   +V      S     I        + +     +   +++
Sbjct: 366 ---------LEPAEYRKMFDRLSV-FP--PSAH---IPTILLSLIWFDVIKSDVMVVVNK 410

Query: 646 YHPISFVAKGANRNFLLAPLLSLRDESYTVYFDFQ 680
            H  S V K    +      +S+     ++Y + +
Sbjct: 411 LHKYSLVEKQPKES-----TISI----PSIYLELK 436
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum} Length = 157 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query681
3kmv_A157 Alpha-L-arabinofuranosidase B; protein:carboydrate 99.8
1wd3_A482 Alpha-L-arabinofuranosidase B; beta-sandwich, beta 99.79
3kmv_A157 Alpha-L-arabinofuranosidase B; protein:carboydrate 99.65
3akh_A468 Putative secreted alpha L-arabinofuranosidase II; 99.17
1wd3_A482 Alpha-L-arabinofuranosidase B; beta-sandwich, beta 99.1
3akh_A468 Putative secreted alpha L-arabinofuranosidase II; 98.97
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 98.63
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 98.6
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 98.57
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 98.55
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 98.52
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 98.21
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 98.2
3pmm_A382 Putative cytoplasmic protein; structural genomics, 98.12
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 98.11
1nc5_A373 Hypothetical protein YTER; structural genomics, he 98.02
1nc5_A373 Hypothetical protein YTER; structural genomics, he 97.9
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 97.88
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.72
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 97.69
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 97.67
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 97.52
3k11_A445 Putative glycosyl hydrolase; structural genomics, 97.39
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 97.01
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 96.98
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 96.94
1nxc_A478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 96.78
3k11_A445 Putative glycosyl hydrolase; structural genomics, 96.4
1dl2_A511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 96.23
1x9d_A538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 95.78
2ri9_A475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 94.72
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 94.72
1nxc_A478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 94.55
1x9d_A538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 94.03
1hcu_A503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 93.75
2ri9_A475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 93.43
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 93.23
1ks8_A433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 93.08
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 92.39
1dl2_A511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 92.31
1hcu_A503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 91.53
1g87_A614 Endocellulase 9G; endoglucanase, cellulose binding 91.19
2xfg_A466 Endoglucanase 1; hydrolase-sugar binding protein c 90.85
1ut9_A609 Cellulose 1,4-beta-cellobiosidase; hydrolase, glyc 90.3
1tf4_A605 T. fusca endo/EXO-cellulase E4 catalytic domain an 89.57
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 85.65
2v8i_A543 Pectate lyase; periplasm, beta-elimination, pectin 84.86
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 82.85
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 81.9
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum} Back     alignment and structure
Probab=99.80  E-value=1.2e-19  Score=172.84  Aligned_cols=113  Identities=20%  Similarity=0.313  Sum_probs=99.7

Q ss_pred             CcccccCCCCCCCceEEeecCCcceEEecCCCCCCcceEEEeeccCCCC-CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 005721          543 GKSVMLEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGD-RTVSLESETYKGCFVYTAVNLQSSESTKLG  621 (681)
Q Consensus       543 g~~v~lepfd~Pg~~v~~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~~-~~vsle~~~~pg~~~~~~~~~~~g~~~~~~  621 (681)
                      ++.|+||+++.|++||||.+..  ++++.++...+|++|++||||++.+ |+|||||.++||+|||+.     |..|+|+
T Consensus         8 ~~~vsl~S~n~p~~ylRh~~~~--~~~~~~~~~~~datF~vvpGLa~~~~g~VSfES~n~Pg~yLRh~-----~~~l~L~   80 (157)
T 3kmv_A            8 ITKAKFQSYNYPNMYIRHANFD--ARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHS-----NYDLSLE   80 (157)
T ss_dssp             --CBEEEESSSTTCEEEEETTE--EEEESSCSSGGGGCEEEEECSSCCSTTEEEEEESSSTTEEEEEE-----TTEEEEE
T ss_pred             CccEEEEecCCCCcEEEEeCCe--EEEccCCCCccCceEEEeCCcCCCCCCEEEEEECCCCCcEEEEe-----CCEEEEe
Confidence            4579999999999999999985  4456567778999999999998765 899999999999999985     9999999


Q ss_pred             eccCCCccccccccceecccCCcccCCceEEEecCCCcchhcc
Q 005721          622 CISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAP  664 (681)
Q Consensus       622 ~~~~~~~~~f~~~asf~~~~gl~~~~~~sf~a~g~~~~~l~~p  664 (681)
                      + . ++++.|+++|+|...+||++...+||++...++.||..=
T Consensus        81 ~-~-~~s~~f~~dATF~~~~GLa~~~~vSfeS~n~Pg~yLrh~  121 (157)
T 3kmv_A           81 K-N-DGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHY  121 (157)
T ss_dssp             E-C-CSCHHHHHTTCEEEEECSSCTTSEEEEESSSTTEEEEEE
T ss_pred             c-c-CCCCCccCCceEEEccCccCCCcEEEEEEcCCCeEEEEE
Confidence            6 3 667789999999999999999999999999999999763
>1wd3_A Alpha-L-arabinofuranosidase B; beta-sandwich, beta-trefoil, hydrolase; HET: NAG; 1.75A {Aspergillus kawachii} SCOP: b.29.1.21 b.42.8.1 PDB: 1wd4_A* 2d44_A* 2d43_A* Back     alignment and structure
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum} Back     alignment and structure
>3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* Back     alignment and structure
>1wd3_A Alpha-L-arabinofuranosidase B; beta-sandwich, beta-trefoil, hydrolase; HET: NAG; 1.75A {Aspergillus kawachii} SCOP: b.29.1.21 b.42.8.1 PDB: 1wd4_A* 2d44_A* 2d43_A* Back     alignment and structure
>3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Back     alignment and structure
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Back     alignment and structure
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Back     alignment and structure
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Back     alignment and structure
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A* Back     alignment and structure
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum} Back     alignment and structure
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Back     alignment and structure
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query681
d1wd3a2162 Alpha-L-arabinofuranosidase B (AbfB), C-terminal d 99.58
d1wd3a2162 Alpha-L-arabinofuranosidase B (AbfB), C-terminal d 99.22
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 98.46
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 97.88
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 97.67
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 97.59
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 97.37
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 97.03
d1nxca_467 Class I alpha-1;2-mannosidase, catalytic domain {M 96.73
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 96.67
d1dl2a_511 Class I alpha-1;2-mannosidase, catalytic domain {B 96.67
d1x9da1453 Class I alpha-1;2-mannosidase, catalytic domain {H 96.19
d1hcua_488 Class I alpha-1;2-mannosidase, catalytic domain {T 95.94
d1ia6a_431 Nonprocessive cellulase Cel9M {Clostridium cellulo 95.43
d1ks8a_433 Endo-b-1,4-glucanase {Termite (Nasutitermes takasa 95.19
d1ut9a1511 Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu 94.87
d2ri9a1475 Class I alpha-1;2-mannosidase, catalytic domain {F 94.85
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 94.39
d1nxca_467 Class I alpha-1;2-mannosidase, catalytic domain {M 93.94
d1g87a1454 Endo/exocellulase:cellobiose E-4, N-terminal domai 92.51
d1tf4a1460 Endo/exocellulase:cellobiose E-4, N-terminal domai 92.32
d1hcua_488 Class I alpha-1;2-mannosidase, catalytic domain {T 90.55
d1dl2a_511 Class I alpha-1;2-mannosidase, catalytic domain {B 90.49
d1clca1441 CelD cellulase, C-terminal domain {Clostridium the 89.54
d2ri9a1475 Class I alpha-1;2-mannosidase, catalytic domain {F 86.68
>d1wd3a2 b.42.8.1 (A:338-499) Alpha-L-arabinofuranosidase B (AbfB), C-terminal domain {Aspergillus kawachii [TaxId: 40384]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Trefoil
superfamily: AbfB domain
family: AbfB domain
domain: Alpha-L-arabinofuranosidase B (AbfB), C-terminal domain
species: Aspergillus kawachii [TaxId: 40384]

Probab=99.58  E-value=1.7e-15  Score=142.16  Aligned_cols=119  Identities=15%  Similarity=0.138  Sum_probs=97.9

Q ss_pred             cccCCCCcccc--cCCCCCCCceEEeecCCcceEEecCCC---CCCcceEEEeeccCCCCCeEEEeecCCcceEEEEeec
Q 005721          537 SLNDFIGKSVM--LEPFDSPGMLVIQHETDDELVVTDSFI---AQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVN  611 (681)
Q Consensus       537 ~p~~~~g~~v~--lepfd~Pg~~v~~~~~~~~l~v~~~~~---~~~~s~f~~vpgl~g~~~~vsle~~~~pg~~~~~~~~  611 (681)
                      +|.-..|+.+.  +.....|+++|||++.-..|.+.....   -..|++|+|||||.+ +|+|||||+++||.|||+.  
T Consensus         4 g~~l~~G~~~slr~~s~~y~~rylrH~~~~~~l~~v~~~s~~~~k~dasf~v~~Gl~~-~~~vSfES~n~Pg~yLRH~--   80 (162)
T d1wd3a2           4 GPSFTSGEVVSLRVTTPGYTTRYIAHTDTTVNTQVVDDDSSTTLKEEASWTVVTGLAN-SQCFSFESVDTPGSYIRHY--   80 (162)
T ss_dssp             SSCCCTTCEEEEEECSTTCTTEEEEEETTEEEEEECCTTSCHHHHHHTCEEEEECSSC-TTSEEEEESSSTTEEEEEE--
T ss_pred             CCccccCceEEEEEeCCCCCceEEEEcCCcEEEEeccCCcchhhcccceEEEccCcCC-CCeEEEEEcCCCCcEEEEE--
Confidence            34445676544  589999999999999866665543322   257899999999998 7999999999999999985  


Q ss_pred             cCCCCcEEEEeccCCCccccccccceecccCCcccCCceEEEecCCCcchhcc
Q 005721          612 LQSSESTKLGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAP  664 (681)
Q Consensus       612 ~~~g~~~~~~~~~~~~~~~f~~~asf~~~~gl~~~~~~sf~a~g~~~~~l~~p  664 (681)
                         +..|+|. +. ++++.|+++|||..++|| .-..+||+...-+..||.+=
T Consensus        81 ---n~~l~L~-~~-d~s~~F~~DATF~~~~gl-~~~g~SfeS~n~p~~YlRH~  127 (162)
T d1wd3a2          81 ---NFELLLN-AN-DGTKQFHEDATFCPQAAL-NGEGTSLRSWSYPTRYFRHY  127 (162)
T ss_dssp             ---TTEEEEE-EC-CCCHHHHHHTCEEEEECT-TSSSEEEEESSSTTCEEEEE
T ss_pred             ---CCEEEEe-cC-CCccccccCceEEEeeCc-CCCceEEEEecCCCceEEee
Confidence               7899999 65 778889999999999999 45679999999999888653
>d1wd3a2 b.42.8.1 (A:338-499) Alpha-L-arabinofuranosidase B (AbfB), C-terminal domain {Aspergillus kawachii [TaxId: 40384]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Back     information, alignment and structure
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Back     information, alignment and structure