Citrus Sinensis ID: 005724

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-

MQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK

cccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccccHHcccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccc

cccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHcHccccccHHHHHHHccHHHHccHHHHHHHHHHHHHHHHEEEEEccccccccccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccEEEEccHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccc

MQETKAASRFadsfsnngaemAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVnhvhgndtydstvTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFycqpmlgsMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVyegviddpygefFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMrecghsaqvptsenskllsfgsnhhYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRStaaaadpchedltcsVERSSLLKRMATLKGVeiktssdsvdleqpvsitglETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLtfevlepnwhVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISssidlpkleepsdgfsgsekfkRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQslgpilssssqaepYLTHLAQLVLGVGFDK

MQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTaaaadpchedltcsverssLLKRMATLKGveiktssdsvdleqpvSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPsdgfsgsekfkrlkLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK

******************AEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQV******KLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEI*******DLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSID************************LSQVQKVMIRDATVTESILKFEREFNNE***************PYLTHLAQLVLGVG***

*****************************VQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLK*SLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLK***************PVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSI*********************************IRDATVTESILKFEREFNNELQSLGPILSS**Q***YLTHLAQLVLGVGFD*

**********ADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK

*********************AIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKG**********D***PVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPS************KLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGF**

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MQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFxxxxxxxxxxxxxxxxxxxxxFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		681	2.2.26 [Sep-21-2011]
Q921G8		905	Gamma-tubulin complex com	yes	no	0.820	0.617	0.401	1e-126
Q9BSJ2		902	Gamma-tubulin complex com	yes	no	0.820	0.619	0.397	1e-124
Q5R5J6		902	Gamma-tubulin complex com	yes	no	0.820	0.619	0.394	1e-124
Q9XYP7		852	Gamma-tubulin complex com	yes	no	0.845	0.676	0.319	2e-93
Q9Y705		784	Spindle pole body compone	yes	no	0.838	0.728	0.311	8e-74
Q95ZG3		1335	Spindle pole body compone	yes	no	0.538	0.274	0.323	3e-62
Q96CW5		907	Gamma-tubulin complex com	no	no	0.716	0.538	0.262	2e-45
O73787		906	Gamma-tubulin complex com	N/A	no	0.712	0.535	0.253	1e-44
P58854		905	Gamma-tubulin complex com	no	no	0.756	0.569	0.255	1e-44
Q9XYP8		917	Gamma-tubulin complex com	no	no	0.497	0.369	0.263	4e-30

>sp\|Q921G8\|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2	Back alignment and function desciption

 Score =  451 bits (1160), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/581 (40%), Positives = 358/581 (61%), Gaps = 22/581 (3%)

Query: 21  MAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDL 80
           + IG      QE  V++DLL  LVG++GRYI+ +                TF VD ++DL
Sbjct: 203 LPIGTLPLASQESAVVEDLLYVLVGVDGRYITAQPLAGR--------QNRTFLVDPNLDL 254

Query: 81  ALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQF 140
           +++E+  RI P+  S+    +F+E +S F+ G VNHA AA++R L+ +Y  +V QLE   
Sbjct: 255 SIRELVNRILPVAASYSTVTRFIEEKSSFEYGQVNHALAAAMRTLVKEYLILVTQLEQLH 314

Query: 141 RLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRS 200
           R G LS+Q LWFY QP + ++  ++++          G + L+LL  ++    GD+  + 
Sbjct: 315 RQGLLSLQKLWFYIQPAMRTIDILASLATSVDKGECVGGSTLSLLHDRSFNYTGDSQAQE 374

Query: 201 LLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYS 260
           L   +T+ AS  Y  ILE+W+Y G+I DPY EF + E+  L KE + +DY+ KYW QRY+
Sbjct: 375 LCLYLTKAASAPYFEILEKWIYRGIIHDPYSEFMV-EEHELRKEKIQEDYNDKYWDQRYT 433

Query: 261 -LKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVA 319
            L   IPSFL  +AGKIL+TGKYLNV+RECGH    P ++  +++       Y+E ++ A
Sbjct: 434 VLPQQIPSFLQKVAGKILSTGKYLNVVRECGHDVTCPVAK--EIIYTLKERAYVEQIEKA 491

Query: 320 YEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKL 379
           + +AS  LL+ + E  +L+  LRSIKRY L+DQGDF VHFMD+  EEL K +++I + +L
Sbjct: 492 FNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLTEEELRKPVEDIILTRL 551

Query: 380 QSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIK-----TSSDSVDLEQP 434
           ++LL++ALR + A  DP  +DL   +    L+ ++  +  +E K     T +D  +L   
Sbjct: 552 EALLELALRMSTANTDPFKDDLKIELMPHDLITQLLRVLAIETKQEKAMTHADPTEL--- 608

Query: 435 VSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARA 494
            +++GLE FS  Y V+WPLS++I+RKALT+YQM+FR +F+CKHVERQLC  W  ++ A+ 
Sbjct: 609 -TLSGLEAFSFDYMVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQ 667

Query: 495 FN-ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHD 553
               S    + +  L + ML F+ ++ +Y+ FEV+EP WH++   L++A +ID+V+ HH 
Sbjct: 668 HALHSAKWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGHHT 727

Query: 554 FFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISS 594
            FLD CL++C+L  P+LLK   +L S+C+ +    Q    S
Sbjct: 728 SFLDNCLKDCMLTNPELLKVFSKLMSVCVMFTNCMQKFTQS 768

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.
Mus musculus (taxid: 10090)

>sp\|Q9BSJ2\|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2	Back alignment and function description

>sp\|Q5R5J6\|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1	Back alignment and function description

>sp\|Q9XYP7\|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2	Back alignment and function description

>sp\|Q9Y705\|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1	Back alignment and function description

>sp\|Q95ZG3\|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2	Back alignment and function description

>sp\|Q96CW5\|GCP3_HUMAN Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2	Back alignment and function description

>sp\|O73787\|GCP3_XENLA Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1	Back alignment and function description

>sp\|P58854\|GCP3_MOUSE Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2	Back alignment and function description

>sp\|Q9XYP8\|GCP3_DROME Gamma-tubulin complex component 3 homolog OS=Drosophila melanogaster GN=l(1)dd4 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		681
296087642		702	unnamed protein product [Vitis vinifera]	0.983	0.954	0.810	0.0
449461078		707	PREDICTED: spindle pole body component 9	0.980	0.944	0.782	0.0
224112407		711	tubulin gamma complex-associated protein	0.970	0.929	0.770	0.0
359488832		681	PREDICTED: gamma-tubulin complex compone	0.953	0.953	0.797	0.0
255578011		713	gamma-tubulin complex component, putativ	0.982	0.938	0.748	0.0
356560679		664	PREDICTED: gamma-tubulin complex compone	0.954	0.978	0.766	0.0
18418288		678	Spc97 / Spc98 family of spindle pole bod	0.942	0.946	0.744	0.0
30686344		679	Spc97 / Spc98 family of spindle pole bod	0.942	0.945	0.743	0.0
297807763		678	hypothetical protein ARALYDRAFT_488606 [	0.942	0.946	0.739	0.0
9755764		683	spindle pole body protein-like [Arabidop	0.942	0.939	0.739	0.0

>gi\|296087642\|emb\|CBI34898.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1056 bits (2731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/681 (81%), Positives = 604/681 (88%), Gaps = 11/681 (1%)

Query: 2   QETKAASRFADSFS----NNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRV 57
           QETK+    A  FS    N G E AI CY A VQEL+VIDDLLSALVGIEGRYISIKR  
Sbjct: 26  QETKSRHSEAKGFSMDSLNTGLEKAIACYHASVQELIVIDDLLSALVGIEGRYISIKR-- 83

Query: 58  NHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHA 117
               G + +D  VTFQ+DASMDLALQE+AKRIFPLCESF+L  QFVESRSQFK GLVNHA
Sbjct: 84  --FRGKE-FD--VTFQIDASMDLALQELAKRIFPLCESFLLINQFVESRSQFKTGLVNHA 138

Query: 118 FAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFT 177
           FAA+LRA LLDY+AMVAQLEHQFRLGRLSIQGLWFYCQPM+GSM A+S VIHKASANNF 
Sbjct: 139 FAAALRAFLLDYQAMVAQLEHQFRLGRLSIQGLWFYCQPMMGSMLALSTVIHKASANNFM 198

Query: 178 GSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAE 237
           GSAVLNLLQSQAKAMAGDN VRSLLEKMTQCAS+AYLGILERWVYEGVIDDPYGEFFIAE
Sbjct: 199 GSAVLNLLQSQAKAMAGDNAVRSLLEKMTQCASSAYLGILERWVYEGVIDDPYGEFFIAE 258

Query: 238 DKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPT 297
           +KSL KESLTQDYDAKYW QRYSLKDGIPSFLAN AG ILTTGKYLNVMRECGH+ QVP 
Sbjct: 259 NKSLQKESLTQDYDAKYWGQRYSLKDGIPSFLANAAGTILTTGKYLNVMRECGHNVQVPA 318

Query: 298 SENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLV 357
           SE+SK +SFGSNHHYLEC+K AYEF+S ELLNLIKE+YDL+GKLRSIK YLLLDQGDFLV
Sbjct: 319 SEDSKFISFGSNHHYLECIKAAYEFSSTELLNLIKEKYDLLGKLRSIKHYLLLDQGDFLV 378

Query: 358 HFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATL 417
           HFMDIAR+EL K+LD+I+VEKLQSLLD+ALR+TAAAADPCHEDLTC VERSSLLKR+ TL
Sbjct: 379 HFMDIARDELAKRLDDISVEKLQSLLDLALRTTAAAADPCHEDLTCCVERSSLLKRLGTL 438

Query: 418 KGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKH 477
           K +EI++ +DS DL++PVSI+GLETFSLSYKVQWPLSIVISRKALTKYQ++FR LFHCKH
Sbjct: 439 KALEIRSLADSNDLKEPVSISGLETFSLSYKVQWPLSIVISRKALTKYQLIFRFLFHCKH 498

Query: 478 VERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHN 537
           V RQLCGAWQ+HQG RA N  GTAI RSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHN
Sbjct: 499 VNRQLCGAWQLHQGVRAINMRGTAIPRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHN 558

Query: 538 RLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSID 597
           RLQTAKSIDEVIQ HDFFLDKCLRECLL LP+LLKKVERLKSLCLQYA+ATQ LISSS+D
Sbjct: 559 RLQTAKSIDEVIQFHDFFLDKCLRECLLLLPELLKKVERLKSLCLQYASATQRLISSSVD 618

Query: 598 LPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPIL 657
           +PK E PS G  G EK K+ K R  S+V K+ I ++TVT+SILKFE+EFN EL SLGPIL
Sbjct: 619 IPKSEVPSKGSLGLEKSKQGKSRIPSRVLKLAITNSTVTDSILKFEKEFNAELHSLGPIL 678

Query: 658 SSSSQAEPYLTHLAQLVLGVG 678
           S+S+QAEP+LTHLAQ +LGVG
Sbjct: 679 SNSAQAEPHLTHLAQWILGVG 699

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449461078\|ref\|XP_004148270.1\| PREDICTED: spindle pole body component 97-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224112407\|ref\|XP_002316177.1\| tubulin gamma complex-associated protein [Populus trichocarpa] gi\|222865217\|gb\|EEF02348.1\| tubulin gamma complex-associated protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359488832\|ref\|XP_002273947.2\| PREDICTED: gamma-tubulin complex component 2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255578011\|ref\|XP_002529877.1\| gamma-tubulin complex component, putative [Ricinus communis] gi\|223530653\|gb\|EEF32527.1\| gamma-tubulin complex component, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356560679\|ref\|XP_003548617.1\| PREDICTED: gamma-tubulin complex component 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|18418288\|ref\|NP_568346.1\| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi\|13430652\|gb\|AAK25948.1\|AF360238_1 putative spindle pole body protein [Arabidopsis thaliana] gi\|14532826\|gb\|AAK64095.1\| putative spindle pole body protein [Arabidopsis thaliana] gi\|332005040\|gb\|AED92423.1\| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|30686344\|ref\|NP_850838.1\| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi\|332005039\|gb\|AED92422.1\| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297807763\|ref\|XP_002871765.1\| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata] gi\|297317602\|gb\|EFH48024.1\| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|9755764\|emb\|CAC01736.1\| spindle pole body protein-like [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		681
TAIR\|locus:2178930		679	AT5G17410 [Arabidopsis thalian	0.866	0.868	0.772	6.2e-269
UNIPROTKB\|F1SCV1		906	TUBGCP2 "Uncharacterized prote	0.926	0.696	0.384	7.4e-121
UNIPROTKB\|J9P5U2		704	TUBGCP2 "Uncharacterized prote	0.914	0.884	0.384	5.2e-120
UNIPROTKB\|Q5ZKY5		895	TUBGCP2 "Uncharacterized prote	0.908	0.691	0.378	2.3e-119
UNIPROTKB\|A5D7P5		905	TUBGCP2 "Uncharacterized prote	0.941	0.708	0.378	2.3e-119
UNIPROTKB\|Q9BSJ2		902	TUBGCP2 "Gamma-tubulin complex	0.923	0.697	0.385	2.3e-119
RGD\|1309597		905	Tubgcp2 "tubulin, gamma comple	0.844	0.635	0.398	2.3e-119
MGI\|MGI:1921487		905	Tubgcp2 "tubulin, gamma comple	0.819	0.616	0.402	4.7e-119
ZFIN\|ZDB-GENE-031118-150		882	tubgcp2 "tubulin, gamma comple	0.910	0.702	0.386	1.3e-118
UNIPROTKB\|E1BZL5		906	TUBGCP2 "Uncharacterized prote	0.910	0.684	0.377	2e-118

TAIR\|locus:2178930 AT5G17410 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2392 (847.1 bits), Expect = 6.2e-269, Sum P(2) = 6.2e-269
 Identities = 471/610 (77%), Positives = 531/610 (87%)

Query:     2 QETKAASRFADS--F-----SNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIK 54
             QET+A+S+FADS  F     S++G E AIGCYD  VQEL+VIDDLLSALVGIEGRYISIK
Sbjct:    28 QETRASSKFADSKRFTLDSSSSSGVEQAIGCYDTPVQELIVIDDLLSALVGIEGRYISIK 87

Query:    55 RRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLV 114
             R     HG +  DS + FQVD SMDLALQE+AKRIFPLCE ++L  QFVES SQFKNGLV
Sbjct:    88 R----FHGKE--DS-IAFQVDPSMDLALQELAKRIFPLCEYYLLIDQFVESSSQFKNGLV 140

Query:   115 NHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASAN 174
             NHAFAA+LRALLLDY+AMVAQLEHQFRLGRLSIQGLWFYCQPM+GSM+A++AVI +AS  
Sbjct:   141 NHAFAAALRALLLDYQAMVAQLEHQFRLGRLSIQGLWFYCQPMMGSMRALAAVIQQASTK 200

Query:   175 NFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFF 234
              F GS VLNLLQSQAKAMAGDN+VRSLLEKMT+CASNAYL ILERWVYEG+IDDPYGEFF
Sbjct:   201 QFVGSGVLNLLQSQAKAMAGDNSVRSLLEKMTECASNAYLSILERWVYEGIIDDPYGEFF 260

Query:   235 IAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQ 294
             IAE++SL KESL+QD  AKYW QRYSLKD IP FLANIA  ILTTGKYLNVMRECGH+ Q
Sbjct:   261 IAENRSLKKESLSQDSTAKYWSQRYSLKDTIPGFLANIAATILTTGKYLNVMRECGHNVQ 320

Query:   295 VPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGD 354
             VP SE SKL  FGSNHHYLEC+K A+EFAS EL+NLIK++YDL+G+LRSIK YLLLDQGD
Sbjct:   321 VPISERSKLTIFGSNHHYLECIKAAHEFASIELVNLIKDKYDLVGRLRSIKHYLLLDQGD 380

Query:   355 FLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRM 414
             FLVHFMDIAREEL K++ EI+VEKLQSLLD+ALR+TAAAADP HEDLTC V+R+SLL   
Sbjct:   381 FLVHFMDIAREELNKKVHEISVEKLQSLLDLALRTTAAAADPRHEDLTCCVDRASLL--- 437

Query:   415 ATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFH 474
              T  G+   T S+S+  E P+SITGLETFSLSYKVQWPLSIVIS+KAL+KYQ++FR LFH
Sbjct:   438 -TTLGMHKDTDSNSI--EDPMSITGLETFSLSYKVQWPLSIVISKKALSKYQLIFRFLFH 494

Query:   475 CKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHV 534
             CKHVERQLCGAWQ+HQG R+ N+ GTAI RSSLLCRSMLKFI+SLLHYLTFEVLEPNWHV
Sbjct:   495 CKHVERQLCGAWQIHQGIRSMNSKGTAILRSSLLCRSMLKFISSLLHYLTFEVLEPNWHV 554

Query:   535 MHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISS 594
             MH+RLQ+ +S+DEVIQHHDFFLDKCLR CLL LPD+LKK+E+LKS+CLQYAAATQWLISS
Sbjct:   555 MHDRLQSTRSVDEVIQHHDFFLDKCLRGCLLLLPDVLKKMEKLKSVCLQYAAATQWLISS 614

Query:   595 SIDLPKLEEP 604
             SID+     P
Sbjct:   615 SIDINSQSHP 624

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB\|F1SCV1 TUBGCP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P5U2 TUBGCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZKY5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7P5 TUBGCP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BSJ2 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1309597 Tubgcp2 "tubulin, gamma complex associated protein 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1921487 Tubgcp2 "tubulin, gamma complex associated protein 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-031118-150 tubgcp2 "tubulin, gamma complex associated protein 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BZL5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020711001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (691 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025404001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (841 aa)	•	•	•	•	0.556

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		681
pfam04130		528	pfam04130, Spc97_Spc98, Spc97 / Spc98 family	1e-134

>gnl\|CDD\|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family	Back alignment and domain information

 Score =  404 bits (1041), Expect = e-134
 Identities = 177/547 (32%), Positives = 271/547 (49%), Gaps = 39/547 (7%)

Query: 38  DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFV 97
           DLL AL+G+E  Y              +    +   +   +  +L+ +  RI  L   + 
Sbjct: 1   DLLFALLGLESLYFRYD--------KSSESFKIAPNISGLLSPSLRSLLNRILELGTLYR 52

Query: 98  LTGQFVE--SRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR-LGRLSIQGLWFYC 154
              +F+E  S S    G V  A AA+LR +L +Y  +VAQLE +    G L++  L    
Sbjct: 53  RLREFIESISSSSSLYGPVLQALAAALREILNEYLQLVAQLESELLSNGTLTLLQLLAEL 112

Query: 155 QPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYL 214
           QP +  ++ ++ ++ +  + +  G  +L+ L  +  +  GD  +R LL ++   AS  YL
Sbjct: 113 QPAILLLRLLAEIVEEILSKSLKGGQLLSSLYERIASQTGDPDLRELLLRLLNAASQPYL 172

Query: 215 GILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFL-ANI 272
            +L RW+  G +DDPYGEFFI E++S   E +  D   +YW +RY+L +D +PSFL   +
Sbjct: 173 QMLSRWLLHGELDDPYGEFFIKENES---EEVLSDDSDEYWEERYTLREDMLPSFLPKEL 229

Query: 273 AGKILTTGKYLNVMRECGHSAQVP------------TSENSKLLSFGSNHHYLECVKVAY 320
           A KIL  GK LN +REC  S  +                  KL S          +  AY
Sbjct: 230 ARKILEIGKSLNFLRECCKSHPLAKDQSLALSLREALVSLLKLFSSLDTSALELLIDSAY 289

Query: 321 EFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQ 380
             AS  LL+L+ E YDL+G L+++K Y LL +GDF+  F++   +EL K  + ++   LQ
Sbjct: 290 LEASKSLLDLLLEEYDLLGHLQALKDYFLLGRGDFISSFLESLFDELDKPANSLSDHALQ 349

Query: 381 SLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGL 440
           SLL  ALRS+++  DP   DL     + S          V     S          ++GL
Sbjct: 350 SLLQEALRSSSSDDDPASSDLDELETKKSDSSETLNRLDVSSLELSS--------GLSGL 401

Query: 441 ETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFN---A 497
           +  +L YKV WPLS++++ +AL KYQ +FR L   K  E  L   W+     R       
Sbjct: 402 DALTLDYKVPWPLSLILTPEALKKYQRIFRFLLRLKRAEYLLNKLWKELNKRRRLGSTRR 461

Query: 498 SGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLD 557
           +   + +  LL   ML F+NSL +Y+  +V+E NW  +  +LQ AK +DE+I  H+ +LD
Sbjct: 462 NEPLLRKIWLLRFQMLHFVNSLQYYIQVDVIESNWQKLQEQLQKAKDLDELIAAHEDYLD 521

Query: 558 KCLRECL 564
             L  C 
Sbjct: 522 SILSGCF 528

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		681
KOG2001		734	consensus Gamma-tubulin complex, DGRIP84/SPC97 com	100.0
KOG2065		679	consensus Gamma-tubulin ring complex protein [Cyto	100.0
PF04130		542	Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00	100.0
KOG2000		879	consensus Gamma-tubulin complex, DGRIP91/SPC98 com	100.0
KOG4344		1121	consensus Uncharacterized conserved protein [Funct	99.96

>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=3.5e-99  Score=790.81  Aligned_cols=636  Identities=44%  Similarity=0.707  Sum_probs=546.1

Q ss_pred             hhhc-ccCCcccccCCCCCccchHHHHHHHHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecCCCCHHHHHHHHH
Q 005724           10 FADS-FSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKR   88 (681)
Q Consensus        10 ~~~~-~~~~~~~~~~~~~~~~~~E~~lv~dlL~~L~G~~g~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~sl~~l~~~   88 (681)
                      |-+. +.+.....+++.+|...||..+++|+++++.|++|.|+++..-.-+..+... .....|.|.|+.+-+++.++++
T Consensus        71 ~~~~~~~~~~~~~~is~~~lp~QE~~li~dLl~af~Gv~~ryV~~Q~~~~s~~~~~~-~~~~~F~v~~~fd~~ir~la~e  149 (734)
T KOG2001|consen   71 ILEGVGIDYFTDYEISDMPLPSQESKLIDDLLYAFVGVEGRYVSPQYMIISEAYEKW-IDSIFFMVLPRFDLAIRELAEE  149 (734)
T ss_pred             hhhccccccccccCcccCCchhHHHHHHHHHHHHHcCCCcceeecchhhhhhhhhhh-ccCcceeeccchhHHHHHHHHH
Confidence            3344 3566777888899999999999999999999999999998551110000000 1357899999999999999999


Q ss_pred             HHHHHhHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHhhhhHHHHHHHHHHHH
Q 005724           89 IFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVI  168 (681)
Q Consensus        89 ll~~g~~~~~l~~fv~~~~~~~~g~~~~Al~~~l~~~L~~y~~~i~~lE~~~~~~~lsL~~L~~~~~~~~~~l~~L~~iv  168 (681)
                      ++|+|.+|..+++||+.++.+..|.|.+|+|+|+++.+.+|+..|.++|++.+.+.+|+++||++++|+...|+.++..+
T Consensus       150 ilpl~~yy~~v~~fie~~s~f~~G~vn~alaaAlr~ll~dyy~li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l~~~~  229 (734)
T KOG2001|consen  150 ILPLASYYLLVQDFIEETSFFEYGQVNHALAAALRELLYDYYELISQLEQELRTNRLSLQDLWFYMQPMMRSMRRLAVAA  229 (734)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhHHHHHHHHHHH
Confidence            99999999999999999988899999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHhhcCCCchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceecCCCCcceeeeCcccccccccc
Q 005724          169 HKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQ  248 (681)
Q Consensus       169 ~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wl~~G~l~D~~~EFfI~~~~~~~~~~l~~  248 (681)
                      +.+..+.++||.+|+.|++++..+.||+..+.++.++++.+++||++|+++|+..|.++|||+||||..+ ...++.+++
T Consensus       230 ~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~-~~~k~~l~e  308 (734)
T KOG2001|consen  230 TTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRNASQPYCTMLEEWIYQGIINDPYQEFMIYDN-LITKEDLPE  308 (734)
T ss_pred             hhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchHHHHHHHHHhcccccCchHhHhhhhc-chhhhcCch
Confidence            8888789999999999999998899999999999999999999999999999999999999999999999 667778889


Q ss_pred             ccchhhhhccccc-ccCCCcchHHHHHHHHHhhhHHHHHHHhcCCCCCCCccccccc-ccCCccchHHHHHHHHHHHHHH
Q 005724          249 DYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLL-SFGSNHHYLECVKVAYEFASGE  326 (681)
Q Consensus       249 ~~~~~~W~~~y~l-~~~vP~Fl~~~a~~Il~~GK~l~~Lr~~~~~~~~p~~e~~~~~-~f~~~~~~~~~I~~~~~~~s~~  326 (681)
                      |+.++||+++|+| +|.+|+|+.+.|+|||.||||+|++|+|++.++.|...+.... ....+..+.+.|+++|..+|..
T Consensus       309 d~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvReC~~~v~~p~~~n~~~~~~~~~e~~~~e~I~~ay~~A~~~  388 (734)
T KOG2001|consen  309 DYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVRECGKIVTIPQSSNEINDPADLMESNHEEYIKKAYEFANEI  388 (734)
T ss_pred             hhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHHHhCccCCCCcchhhhccccccchhhHHHHHHHHHHHHHHH
Confidence            9999999999999 7899999999999999999999999999999887765432111 1223478899999999999999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhccCcccCHHHHHHHHHHHHH-hhhcccCCCCCccceee
Q 005724          327 LLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSV  405 (681)
Q Consensus       327 l~~ll~~~~~L~~hL~~l~~~fLL~~Gdf~~~f~~~l~~~L~~~~~~~~~~~L~~~l~~al~-~s~~~~d~~~~~l~~~~  405 (681)
                      ++++++++++|..||+.+|+||||.+|||+.+|+|.+.++|.|+.+.+++.+|+++|+.|++ .+.+.+||++++++|.+
T Consensus       389 lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~eEL~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~  468 (734)
T KOG2001|consen  389 LLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEEELTKNVENISPEKLQSLLDLALREQSEAANDPMKEDLKICV  468 (734)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcchhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999 77778999999999999


Q ss_pred             ccccHHHHHHhhhccccccCCCCCCCCCC---CCCcccceEEeeeecCCCcceeechHHHHHHHHHHHHHHHHHHHHHHH
Q 005724          406 ERSSLLKRMATLKGVEIKTSSDSVDLEQP---VSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQL  482 (681)
Q Consensus       406 ~~~~l~~~l~~~~~l~~~~~~~~~~~~~~---~~~~~~d~l~L~Y~v~wPL~liit~~~l~~Y~~iFr~Ll~lk~~~~~L  482 (681)
                      .+.+++.++..+-.++...- +++...+|   .++.|++.+.++|+|||||++||++++|.|||.|||+++.||++++.|
T Consensus       469 ~~~~L~~ql~~~l~ie~~e~-~ans~~dP~~~l~lsGlE~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL  547 (734)
T KOG2001|consen  469 DPTDLITQLSHILAIEPEEE-SANSQADPLEHLDLSGLEAFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQL  547 (734)
T ss_pred             cHhhHHHHHHHHHhcCcccc-ccccccCcchhccccchhhheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999887644432111 11112233   578999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccccCCch-hhHHhHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005724          483 CGAWQVHQGARAFNASG-TAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLR  561 (681)
Q Consensus       483 ~~~w~~~~~~r~~~~~~-~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~~~~~~~~l~~a~~ld~l~~~H~~fL~~i~~  561 (681)
                      +.+|..++..|..+..+ ++.+.++.+|++|++||+++.+|++.+||||+|..|++.+++++++|+++..|+.|||.|++
T Consensus       548 ~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk  627 (734)
T KOG2001|consen  548 CETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLK  627 (734)
T ss_pred             HHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Confidence            99999998877666543 45678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Q 005724          562 ECLLHLP-DLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESIL  640 (681)
Q Consensus       562 ~cfL~~~-~l~~~l~~il~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  640 (681)
                      .|+|+.+ .+++.+.++..+|+.||..++.+++..   .-++.....+. | .+..+  +.+.+.+    --+.+.+.+.
T Consensus       628 ~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~~~~---~~~~~~~~~~~-~-~~d~~--~k~~~t~----li~~leei~~  696 (734)
T KOG2001|consen  628 RCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLTQSD---PTDEEKNSVGH-P-QFDEG--RKEDDTL----LISKLEEIIS  696 (734)
T ss_pred             hhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhhhhccccc-c-chhhh--hhhhhHH----HHHHHHHHHH
Confidence            9999986 789999999999999999999887421   00111010110 0 11111  1111111    0223455677


Q ss_pred             HHHHHHHHHHHhHHHHhcc
Q 005724          641 KFEREFNNELQSLGPILSS  659 (681)
Q Consensus       641 ~~~~~F~~~~~~l~~~l~~  659 (681)
                      .++..|++++..|+..|++
T Consensus       697 ~~~~~f~~~l~~L~~rlsk  715 (734)
T KOG2001|consen  697 NADKNFRDCLKNLLQRLSK  715 (734)
T ss_pred             HhHHHHHHHHHHHHHHccc
Confidence            7999999999999999994

>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]	Back alignment and domain information

>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin	Back alignment and domain information

>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]	Back alignment and domain information

>KOG4344 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		681
3rip_A		677	Crystal Structure Of Human Gamma-Tubulin Complex Pr		3e-19

>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677

Back alignment and structure

Iteration: 1

Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 117/521 (22%), Positives = 209/521 (40%), Gaps = 63/521 (12%) Query: 111 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG--RLSIQGLWFYCQPMLGSMQAVSAVI 168 +G+ AF L ++L Y + LE +F LG LSI + ++ +V V+ Sbjct: 82 HGIYLRAFCTGLDSVLQPYRQALLDLEQEF-LGDPHLSISHVNYFLDQFQLLFPSVMVVV 140 Query: 169 HKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 228 + + G +L + + G VRS LEK+ L W+ G++ D Sbjct: 141 EQIKSQKIHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLD 198 Query: 229 PYGEFFIAEDKSLLKESLTQDYD----------AKYWRQ------------------RYS 260 + EFFI + S S + D K R+ ++S Sbjct: 199 QHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFS 258 Query: 261 LK-DGIPSFLA-NIAGKILTTGKYLNVMRECGHSAQVPTSENSKLL-----SFGSNHHYL 313 L+ + +PS++ +A KIL G+ + + + V + +L +F + H L Sbjct: 259 LRVEILPSYIPVRVAEKILFVGESVQMFE----NQNVNLTRKGSILKNQEDTFAAELHRL 314 Query: 314 ------------ECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 361 + V + L L+ E DL+G+L+ IK + LL +G+ F+D Sbjct: 315 KQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFID 374 Query: 362 IAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVE 421 A+ L +T + + D L ++E + AT Sbjct: 375 TAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKDAT--QAR 432 Query: 422 IKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQ 481 S ++ E P S G LSYKVQWPL I+ + L KY +VF+ L + V+ + Sbjct: 433 EGPSRETSPREAPAS--GWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAE 490 Query: 482 LCGAWQVHQGARAFNASGTAISRSSLLCRSMLKF-INSLLHYLTFEVLEPNWHVMHNRLQ 540 L W + + ++ T + L R+ + F +++L +YL +VLE + + +++ Sbjct: 491 LQHCWALQMQRKHLKSNQTDAIKWRL--RNHMAFLVDNLQYYLQVDVLESQFSQLLHQIN 548 Query: 541 TAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 581 + + + + HD FL L + + L + + + LC Sbjct: 549 STRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLC 589

PyMOL of 3rip

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		681
3rip_A		677	Gamma-tubulin complex component 4; helix bundles,	1e-102
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677	Back alignment and structure

 Score =  326 bits (837), Expect = e-102
 Identities = 131/703 (18%), Positives = 241/703 (34%), Gaps = 119/703 (16%)

Query: 35  VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVD---ASMDLALQEMAKRIFP 91
           +I +LL AL G  G                T++     QV      +  +   +  R+  
Sbjct: 1   MIHELLLALSGYPGSIF-------------TWNKRSGLQVSQDFPFLHPSETSVLNRLCR 47

Query: 92  LCESFVLTGQFVESRSQF---------------KNGLVNHAFAASLRALLLDYEAMVAQL 136
           L   ++   +F+E  +                  +G+   AF   L ++L  Y   +  L
Sbjct: 48  LGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDL 107

Query: 137 EHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGD 195
           E +F     LSI  + ++         +V  V+ +  +    G  +L  +   +    G 
Sbjct: 108 EQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHS--CGGL 165

Query: 196 NTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAK-- 253
             VRS LEK+           L  W+  G++ D + EFFI +  S    S   + D +  
Sbjct: 166 PPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL 225

Query: 254 --------------------------YWRQRYSL-KDGIPSFL-ANIAGKILTTGKYLNV 285
                                        +++SL  + +PS++   +A KIL  G+ + +
Sbjct: 226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQM 285

Query: 286 MRECGHSAQ-------------VPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIK 332
                 +                      K     S   + + V       +  L  L+ 
Sbjct: 286 FENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMV 345

Query: 333 ERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAA 392
           E  DL+G+L+ IK + LL +G+    F+D A+  L      +T   +      +      
Sbjct: 346 EESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLL 405

Query: 393 AADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP 452
             D     L  ++E      + AT    + +         +    +G     LSYKVQWP
Sbjct: 406 DDDNLLPLLHLTIEYHGKEHKDAT----QAREGPSRETSPREAPASGWAALGLSYKVQWP 461

Query: 453 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSM 512
           L I+ +   L KY +VF+ L   + V+ +L   W +    +    S    +    L   M
Sbjct: 462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLK-SNQTDAIKWRLRNHM 520

Query: 513 LKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLK 572
              +++L +YL  +VLE  +  + +++ + +  + +   HD FL   L +  + L  +  
Sbjct: 521 AFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFH 580

Query: 573 KVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRD 632
            +  +  LC  + +     +                                       D
Sbjct: 581 CLNEILDLCHSFCSLVSQNLGPL------------------------------------D 604

Query: 633 ATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVL 675
                 +    + F+ +   L  ILSS    +   + LAQL+L
Sbjct: 605 ERGAAQLSILVKGFSRQSSLLFKILSSVRNHQ-INSDLAQLLL 646

PyMOL of 3rip

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		681
3rip_A		677	Gamma-tubulin complex component 4; helix bundles,	100.0

>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=6.8e-91  Score=799.35  Aligned_cols=589  Identities=22%  Similarity=0.356  Sum_probs=480.6

Q ss_pred             HHHHHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecC---CCCHHHHHHHHHHHHHHhHHHHHHHHhhhccC---
Q 005724           35 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLALQEMAKRIFPLCESFVLTGQFVESRSQ---  108 (681)
Q Consensus        35 lv~dlL~~L~G~~g~~~~~~~~~~~~~~~~~~~~~~~f~i~~---~~~~sl~~l~~~ll~~g~~~~~l~~fv~~~~~---  108 (681)
                      ||+|+|++|+|++|.+|++++             .++|+|++   .+++|+++++++++++|.+|++|++|++....   
T Consensus         1 Ml~dlL~~L~G~~g~~i~~~~-------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~   67 (677)
T 3rip_A            1 MIHELLLALSGYPGSIFTWNK-------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQ   67 (677)
T ss_dssp             CHHHHHHHHTTCCCSSSEEET-------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred             ChHHHHHHHcCCCCCceEecC-------------CCceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            689999999999999999876             14788988   56799999999999999999999999996432   


Q ss_pred             -----C-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCcHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Q 005724          109 -----F-------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN  175 (681)
Q Consensus       109 -----~-------~~g~~~~Al~~~l~~~L~~y~~~i~~lE~~~~~-~~lsL~~L~~~~~~~~~~l~~L~~iv~~~~~~~  175 (681)
                           +       ..|+|.+|||++|+++|++|+..|+++|+++.. +.+||..++..++|+...|+.|++|+.++..+.
T Consensus        68 ~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~  147 (677)
T 3rip_A           68 QQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQK  147 (677)
T ss_dssp             -----------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                 1       169999999999999999999999999999854 579999999999999999999999999887667


Q ss_pred             CchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceecCCCCcceeeeCcccccccc---------
Q 005724          176 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESL---------  246 (681)
Q Consensus       176 ~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wl~~G~l~D~~~EFfI~~~~~~~~~~l---------  246 (681)
                      ++||++|+.||+.+  .+|||.+++++.+|+..|++||+++|..||.+|+|.|||+||||++++..++...         
T Consensus       148 ~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~  225 (677)
T 3rip_A          148 IHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL  225 (677)
T ss_dssp             CCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-----------------
T ss_pred             CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEecccccccccccccccccc
Confidence            89999999999987  4999999999999999999999999999999999999999999998864321100         


Q ss_pred             -----c--------------cccchhhhhccccc-ccCCCcchHH-HHHHHHHhhhHHHHHHHhcCCCC-----CCCccc
Q 005724          247 -----T--------------QDYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQ-----VPTSEN  300 (681)
Q Consensus       247 -----~--------------~~~~~~~W~~~y~l-~~~vP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~~-----~p~~e~  300 (681)
                           .              ++....+|..+|.| .+++|+|+++ +|+|||.|||++|+||.++....     ++..+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~  305 (677)
T 3rip_A          226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQED  305 (677)
T ss_dssp             ---------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHH
T ss_pred             ccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHH
Confidence                 0              00012479999999 7889999987 99999999999999999764311     000000


Q ss_pred             ------ccccccC--CccchHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhccCc
Q 005724          301 ------SKLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLD  372 (681)
Q Consensus       301 ------~~~~~f~--~~~~~~~~I~~~~~~~s~~l~~ll~~~~~L~~hL~~l~~~fLL~~Gdf~~~f~~~l~~~L~~~~~  372 (681)
                            ..+....  +...|...|+++|..+|+.|+++++++++|.+||+++|+||||++|||+..|++.++++|.+|+.
T Consensus       306 ~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~  385 (677)
T 3rip_A          306 TFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPT  385 (677)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Confidence                  0011110  11467889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhhhcccCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCcccceEEeeeecCCC
Q 005724          373 EITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP  452 (681)
Q Consensus       373 ~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~Y~v~wP  452 (681)
                      +++..+|+..++.|++.+....++..+.+.+.+........ ..-...  ...+ ......+.+..|||+|.|+|+||||
T Consensus       386 ~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~~d~l~L~Y~v~~P  461 (677)
T 3rip_A          386 AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHK-DATQAR--EGPS-RETSPREAPASGWAALGLSYKVQWP  461 (677)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC---------------------------CCTTTTEEEEECCCTT
T ss_pred             ccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccc-cccccc--cccc-cccccccCCccchheEEEEEeCCCh
Confidence            99999999999999998766555666667666554321100 000000  0000 0011223457899999999999999


Q ss_pred             cceeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhhHHhHHHHHHHHHHHHHHHHHHHhhhcccccH
Q 005724          453 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNW  532 (681)
Q Consensus       453 L~liit~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~~  532 (681)
                      |++|||+++|.+|++||+|||++||+++.|+++|+.++..+..........+ +.+|++|+|||+++++|++++||+++|
T Consensus       462 L~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w  540 (677)
T 3rip_A          462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQF  540 (677)
T ss_dssp             GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987754433222223334 899999999999999999999999999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChh
Q 005724          533 HVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSE  612 (681)
Q Consensus       533 ~~~~~~l~~a~~ld~l~~~H~~fL~~i~~~cfL~~~~l~~~l~~il~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~  612 (681)
                      .+|++++++++|+|+|+++|++||++|+++|||+.+++.++|.+|+++|++||..+++..      .. .          
T Consensus       541 ~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~~~------~~-~----------  603 (677)
T 3rip_A          541 SQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNL------GP-L----------  603 (677)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCC---------C----------
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhhc------cc-c----------
Confidence            999999999999999999999999999999999999999999999999999999986321      00 0          


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhcccccccchHHHHHHHHhccCCC
Q 005724          613 KFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFD  680 (681)
Q Consensus       613 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~l~~~~~~~~~~~~L~~ll~rld~n  680 (681)
                                         .+...+++++++++|++++..|+++|++++ +.++.++|++||+|||||
T Consensus       604 -------------------~~~~~~~~~~l~~~F~~~~~~L~~~l~~l~-~~~~~~~l~~Ll~rLd~N  651 (677)
T 3rip_A          604 -------------------DERGAAQLSILVKGFSRQSSLLFKILSSVR-NHQINSDLAQLLLRLDYN  651 (677)
T ss_dssp             -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHHH
T ss_pred             -------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHhCch
Confidence                               011246799999999999999999999984 467789999999999998

PyMOL of 3rip

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00