Citrus Sinensis ID: 005728

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680
MFACSFLLGACCMEYDSLFLSFYFYTAGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT
ccccccHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccEEHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccEEEEHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHHHHHHHcccccccccEEEEccccccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccEEEEccccHHHHHHHHHcccccccccEEEEEEEEccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHcccccEEEEEccccEEEEEcc
ccccccccccEccccccEccccccccccccccccHHHHHHccccHcccccccccccccccccHHHEEEEEEcHcHHHHEcccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccEcEHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHcccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccHHHHHEEcccHHHHHHHHHHHcccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHccEEEEEccccccccccccccccEEEEEEEcccHHHHHHHHHHHHcccHcccEEEEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHcccccEEEEEccccEEEEEEc
mfacsfllgaccMEYDSLFLSFYFYTAGitglklktfkdnwfSDYQktnnagipdpngavdwSFNALvglffpavtgimagsnrsaslkdtqrsipigtlaATLTTTALYVISVLLFGAAATREELLTDRLLTatiawpfpavIHIGIILSTLGAALQSLTGAPRLLAAianddilpvlnyfkvaegrephiaTFFTAFICIGCViignldlitpTITMFFLLCYSGVNLSCFLLDlldapswrprwkfhhwslslLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLkgkagdwgdgLKSAYFQLALRSLRSlganqvhpknwypiplifcrpwgklpenvpchpkladfancmkkkgrgMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIvvapnmsegFRGIVQtmglgnlkpnivvmrypeiwrrenlteipaTFVGIINDCIVANKAVVIVKGldewpneyqrqygtidLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSwdeqtengpqqdESLDAFIAAQHRIKNYLAEMKAEAqksgtplmadgkpvvvNEQQVEKFLYTTLKLNSTILRHSRMAAVVLvslppppinhpaycYMEYMDLLVENVPRLLIVRGYRRDVVTLFT
MFACSFLLGACCMEYDSLFLSFYFYTAGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQtmglgnlkpniVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIaeedsdaeVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRllivrgyrrdvvtlft
MFACSFLLGACCMEYDSLFLSFYFYTAGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGtlaatltttalYVISVLLFGAAatreelltdrlltatIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGlmlllsqlllTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLppppINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT
*FACSFLLGACCMEYDSLFLSFYFYTAGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGS**********RSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSW***************AFIAAQHRIKNYLA******************PVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLF*
MFACSFLLGACCMEYDSLFLSFYFYTAGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDY*************LATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVM**************PATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIA*************KKFLYDLRMQAEVIVISMKSWDEQTENGP***E*LDAFIAAQHRIKNYLAEMKA****************************************SRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT
MFACSFLLGACCMEYDSLFLSFYFYTAGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSW**********DESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT
MFACSFLLGACCMEYDSLFLSFYFYTAGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQ*R****LAEMKAE************KPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFACSFLLGACCMEYDSLFLSFYFYTAGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query680 2.2.26 [Sep-21-2011]
Q6Z0E2989 Cation-chloride cotranspo yes no 0.960 0.660 0.864 0.0
Q2UVJ5975 Cation-chloride cotranspo yes no 0.954 0.665 0.862 0.0
Q657W3994 Cation-chloride cotranspo yes no 0.957 0.654 0.821 0.0
Q924N41150 Solute carrier family 12 yes no 0.895 0.529 0.359 1e-115
Q9UHW91150 Solute carrier family 12 yes no 0.897 0.530 0.358 1e-115
Q5RK271083 Solute carrier family 12 no no 0.989 0.621 0.332 1e-113
Q9JIS81085 Solute carrier family 12 no no 0.952 0.597 0.335 1e-113
Q286771085 Solute carrier family 12 no no 0.952 0.597 0.335 1e-112
Q636321085 Solute carrier family 12 no no 0.952 0.597 0.334 1e-112
Q9WVL31083 Solute carrier family 12 no no 0.991 0.622 0.335 1e-112
>sp|Q6Z0E2|CCC1_ORYSJ Cation-chloride cotransporter 1 OS=Oryza sativa subsp. japonica GN=CCC1 PE=2 SV=1 Back     alignment and function desciption
 Score = 1159 bits (2998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/656 (86%), Positives = 612/656 (93%), Gaps = 3/656 (0%)

Query: 28  GITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSAS 87
           GITGL + TFKDNW S+YQ+TNNAG+PDPNG++ W FNALVGLFFPAVTGIMAGSNRSAS
Sbjct: 334 GITGLSITTFKDNWGSEYQRTNNAGVPDPNGSIYWDFNALVGLFFPAVTGIMAGSNRSAS 393

Query: 88  LKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIG 147
           LKDTQRSIPIGTL+ATLTTTA+Y+ SVLLFGA ATREELLTDRLLTAT+AWP PAVI+IG
Sbjct: 394 LKDTQRSIPIGTLSATLTTTAMYLFSVLLFGALATREELLTDRLLTATVAWPAPAVIYIG 453

Query: 148 IILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII 207
           IILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKV+EG EPH AT FTAFICI CV+I
Sbjct: 454 IILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVSEGAEPHSATLFTAFICICCVVI 513

Query: 208 GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMF 267
           GNLDLITPTITMFFLLCY+GVNLSCFLLDLLDAPSWRPRWKFHHWSLSL+G++ C+VIMF
Sbjct: 514 GNLDLITPTITMFFLLCYAGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLVGALLCVVIMF 573

Query: 268 LISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWY 327
           LISWSFTVVSLALASLIYYYV LKGKAGDWGDG KSAYFQLALRSLRSLGANQVHPKNWY
Sbjct: 574 LISWSFTVVSLALASLIYYYVSLKGKAGDWGDGFKSAYFQLALRSLRSLGANQVHPKNWY 633

Query: 328 PIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACK 387
           PIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSI+DGDYHE AEDAKTAC+
Sbjct: 634 PIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSIIDGDYHELAEDAKTACR 693

Query: 388 QLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEI 447
           QL TYI+YKRCEGVAEI+VAP+MSEGFR IVQTMGLGNLKPNI+VMRYPEIWRRENL +I
Sbjct: 694 QLDTYIEYKRCEGVAEIIVAPSMSEGFRSIVQTMGLGNLKPNIIVMRYPEIWRRENLIQI 753

Query: 448 PATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTK 507
           P+TFV IINDCI+ANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTK
Sbjct: 754 PSTFVSIINDCIIANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTK 813

Query: 508 ESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWD---EQTENGPQ 564
           E+FESCKIQVFCIAEED+DAE LKADVKKFLYDLRM AEVIV++MKSW+   E + +G  
Sbjct: 814 ETFESCKIQVFCIAEEDTDAEELKADVKKFLYDLRMHAEVIVVTMKSWEPHMESSSSGAP 873

Query: 565 QDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNST 624
           QD+S +A+ +AQ RI  YL+EMK  AQ+ G PLM DGK VVVNEQ++EKFLYT  KLNST
Sbjct: 874 QDDSQEAYTSAQRRISTYLSEMKETAQREGHPLMEDGKQVVVNEQKIEKFLYTMFKLNST 933

Query: 625 ILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT 680
           ILR+SRMAAVVLVSLPPPP+NHPAY YMEYMDLLVENVPR+LIVRGYRRDVVT FT
Sbjct: 934 ILRYSRMAAVVLVSLPPPPLNHPAYFYMEYMDLLVENVPRMLIVRGYRRDVVTFFT 989
Probable cation/chloride cotransporter that may mediate potassium-chloride cotransport. Involved in plant development and K(+) and Cl(-) homeostasis. May not be involved in sodium-chloride cotransport.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q2UVJ5|CCC1_ARATH Cation-chloride cotransporter 1 OS=Arabidopsis thaliana GN=CCC1 PE=1 SV=1 Back     alignment and function description
>sp|Q657W3|CCC2_ORYSJ Cation-chloride cotransporter 2 OS=Oryza sativa subsp. japonica GN=CCC2 PE=2 SV=2 Back     alignment and function description
>sp|Q924N4|S12A6_MOUSE Solute carrier family 12 member 6 OS=Mus musculus GN=Slc12a6 PE=1 SV=2 Back     alignment and function description
>sp|Q9UHW9|S12A6_HUMAN Solute carrier family 12 member 6 OS=Homo sapiens GN=SLC12A6 PE=1 SV=2 Back     alignment and function description
>sp|Q5RK27|S12A7_RAT Solute carrier family 12 member 7 OS=Rattus norvegicus GN=Slc12a7 PE=2 SV=2 Back     alignment and function description
>sp|Q9JIS8|S12A4_MOUSE Solute carrier family 12 member 4 OS=Mus musculus GN=Slc12a4 PE=1 SV=2 Back     alignment and function description
>sp|Q28677|S12A4_RABIT Solute carrier family 12 member 4 OS=Oryctolagus cuniculus GN=SLC12A4 PE=1 SV=1 Back     alignment and function description
>sp|Q63632|S12A4_RAT Solute carrier family 12 member 4 OS=Rattus norvegicus GN=Slc12a4 PE=1 SV=1 Back     alignment and function description
>sp|Q9WVL3|S12A7_MOUSE Solute carrier family 12 member 7 OS=Mus musculus GN=Slc12a7 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query680
284449849 980 cation chloride cotransporter [Citrus cl 0.998 0.692 0.970 0.0
294715574 980 cation-chloride cotransporter [Citrus tr 0.998 0.692 0.967 0.0
297740807 1072 unnamed protein product [Vitis vinifera] 0.960 0.609 0.901 0.0
359483927 976 PREDICTED: cation-chloride cotransporter 0.960 0.669 0.901 0.0
255571328 976 cation:chloride symporter, putative [Ric 0.958 0.668 0.908 0.0
356556503 992 PREDICTED: cation-chloride cotransporter 0.961 0.659 0.864 0.0
224116618 968 cation-chloride cotransporter [Populus t 0.976 0.685 0.879 0.0
356530533 994 PREDICTED: cation-chloride cotransporter 0.961 0.657 0.861 0.0
75132789 989 RecName: Full=Cation-chloride cotranspor 0.960 0.660 0.864 0.0
125561085 989 hypothetical protein OsI_28779 [Oryza sa 0.960 0.660 0.862 0.0
>gi|284449849|emb|CBJ19439.1| cation chloride cotransporter [Citrus clementina] Back     alignment and taxonomy information
 Score = 1310 bits (3390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/679 (97%), Positives = 660/679 (97%)

Query: 2   FACSFLLGACCMEYDSLFLSFYFYTAGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVD 61
           F    LL   C+    L  S      GITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVD
Sbjct: 302 FLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVD 361

Query: 62  WSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAA 121
           WSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAA
Sbjct: 362 WSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAA 421

Query: 122 TREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNY 181
           TREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNY
Sbjct: 422 TREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNY 481

Query: 182 FKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAP 241
           FKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAP
Sbjct: 482 FKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAP 541

Query: 242 SWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGL 301
           SWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGL
Sbjct: 542 SWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGL 601

Query: 302 KSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKG 361
           KSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKG
Sbjct: 602 KSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKG 661

Query: 362 RGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTM 421
           RGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTM
Sbjct: 662 RGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTM 721

Query: 422 GLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQ 481
           GLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQ
Sbjct: 722 GLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQ 781

Query: 482 YGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDL 541
           YGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDL
Sbjct: 782 YGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDL 841

Query: 542 RMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADG 601
           RMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADG
Sbjct: 842 RMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADG 901

Query: 602 KPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVEN 661
           KPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVEN
Sbjct: 902 KPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVEN 961

Query: 662 VPRLLIVRGYRRDVVTLFT 680
           VPRLLIVRGYRRDVVTLFT
Sbjct: 962 VPRLLIVRGYRRDVVTLFT 980

Source: Citrus clementina

Species: Citrus clementina

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|294715574|gb|ADF30875.1| cation-chloride cotransporter [Citrus trifoliata] Back     alignment and taxonomy information
>gi|297740807|emb|CBI30989.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483927|ref|XP_003633037.1| PREDICTED: cation-chloride cotransporter 1 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255571328|ref|XP_002526613.1| cation:chloride symporter, putative [Ricinus communis] gi|223534053|gb|EEF35772.1| cation:chloride symporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356556503|ref|XP_003546564.1| PREDICTED: cation-chloride cotransporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224116618|ref|XP_002317348.1| cation-chloride cotransporter [Populus trichocarpa] gi|222860413|gb|EEE97960.1| cation-chloride cotransporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356530533|ref|XP_003533835.1| PREDICTED: cation-chloride cotransporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|75132789|sp|Q6Z0E2.1|CCC1_ORYSJ RecName: Full=Cation-chloride cotransporter 1; Short=OsCCC1; AltName: Full=Potassium-chloride cotransporter 1 gi|38637408|dbj|BAD03666.1| putative Na+/K+/Cl-cotransport protein [Oryza sativa Japonica Group] gi|125602984|gb|EAZ42309.1| hypothetical protein OsJ_26882 [Oryza sativa Japonica Group] gi|282895735|gb|ADB03187.1| potassium-chloride cotransporter [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|125561085|gb|EAZ06533.1| hypothetical protein OsI_28779 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query680
UNIPROTKB|Q6Z0E2989 CCC1 "Cation-chloride cotransp 0.997 0.685 0.781 9.8e-293
TAIR|locus:2028170975 CCC1 "cation-chloride co-trans 0.954 0.665 0.805 4.9e-291
UNIPROTKB|F1SCL61152 F1SCL6 "Uncharacterized protei 0.719 0.424 0.380 5.1e-116
FB|FBgn02617941074 kcc "kazachoc" [Drosophila mel 0.745 0.472 0.377 1.9e-106
ZFIN|ZDB-GENE-090218-271095 slc12a4 "solute carrier family 0.719 0.446 0.375 6.3e-104
UNIPROTKB|E1BZK31094 SLC12A4 "Uncharacterized prote 0.723 0.449 0.376 1.3e-103
UNIPROTKB|Q9H2X91139 SLC12A5 "Solute carrier family 0.717 0.428 0.365 5.6e-101
MGI|MGI:18620371138 Slc12a5 "solute carrier family 0.717 0.428 0.363 9.1e-101
RGD|6208111139 Slc12a5 "solute carrier family 0.717 0.428 0.363 1.9e-100
UNIPROTKB|A8KC651169 SLC12A5 "Uncharacterized prote 0.717 0.417 0.363 2.4e-100
UNIPROTKB|Q6Z0E2 CCC1 "Cation-chloride cotransporter 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 2811 (994.6 bits), Expect = 9.8e-293, P = 9.8e-293
 Identities = 534/683 (78%), Positives = 582/683 (85%)

Query:     2 FACSFLLGACCMEYDSLFLS-FYFYTAGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAV 60
             F    L    C+ Y  +F++  +    GITGL + TFKDNW S+YQ+TNNAG+PDPNG++
Sbjct:   308 FLIPVLFSLLCI-YLGVFIAPRHNAPKGITGLSITTFKDNWGSEYQRTNNAGVPDPNGSI 366

Query:    61 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVISVLLFGAA 120
              W FNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIG           Y+ SVLLFGA 
Sbjct:   367 YWDFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLSATLTTTAMYLFSVLLFGAL 426

Query:   121 XXXXXXXXXXXXXXXIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLN 180
                            +AWP PAVI+IGIILSTLGAALQSLTGAPRLLAAIANDDILPVLN
Sbjct:   427 ATREELLTDRLLTATVAWPAPAVIYIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLN 486

Query:   181 YFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDA 240
             YFKV+EG EPH AT FTAFICI CV+IGNLDLITPTITMFFLLCY+GVNLSCFLLDLLDA
Sbjct:   487 YFKVSEGAEPHSATLFTAFICICCVVIGNLDLITPTITMFFLLCYAGVNLSCFLLDLLDA 546

Query:   241 PSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDG 300
             PSWRPRWKFHHWSLSL+G++ C+VIMFLISWSFTVVSLALASLIYYYV LKGKAGDWGDG
Sbjct:   547 PSWRPRWKFHHWSLSLVGALLCVVIMFLISWSFTVVSLALASLIYYYVSLKGKAGDWGDG 606

Query:   301 LKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKK 360
              KSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKK
Sbjct:   607 FKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKK 666

Query:   361 GRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQT 420
             GRGMSIFVSI+DGDYHE AEDAKTAC+QL TYI+YKRCEGVAEI+VAP+MSEGFR IVQT
Sbjct:   667 GRGMSIFVSIIDGDYHELAEDAKTACRQLDTYIEYKRCEGVAEIIVAPSMSEGFRSIVQT 726

Query:   421 MGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQR 480
             MGLGNLKPNI+VMRYPEIWRRENL +IP+TFV IINDCI+ANKAVVIVKGLDEWPNEYQR
Sbjct:   727 MGLGNLKPNIIVMRYPEIWRRENLIQIPSTFVSIINDCIIANKAVVIVKGLDEWPNEYQR 786

Query:   481 QYGTIDLYWIVRDGGXXXXXXXXXXTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYD 540
             QYGTIDLYWIVRDGG          TKE+FESCKIQVFCIAEED+DAE LKADVKKFLYD
Sbjct:   787 QYGTIDLYWIVRDGGLMLLLSQLLLTKETFESCKIQVFCIAEEDTDAEELKADVKKFLYD 846

Query:   541 LRMQAEVIVISMKSWD---EQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPL 597
             LRM AEVIV++MKSW+   E + +G  QD+S +A+ +AQ RI  YL+EMK  AQ+ G PL
Sbjct:   847 LRMHAEVIVVTMKSWEPHMESSSSGAPQDDSQEAYTSAQRRISTYLSEMKETAQREGHPL 906

Query:   598 MADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLXXXXINHPAYCYMEYMDL 657
             M DGK VVVNEQ++EKFLYT  KLNSTILR+SRMAAVVLVSL    +NHPAY YMEYMDL
Sbjct:   907 MEDGKQVVVNEQKIEKFLYTMFKLNSTILRYSRMAAVVLVSLPPPPLNHPAYFYMEYMDL 966

Query:   658 LVENVPRLLIVRGYRRDVVTLFT 680
             LVENVPR+LIVRGYRRDVVT FT
Sbjct:   967 LVENVPRMLIVRGYRRDVVTFFT 989
GO:0006821 "chloride transport" evidence=IMP
GO:0015379 "potassium:chloride symporter activity" evidence=IMP
GO:0055064 "chloride ion homeostasis" evidence=IMP
GO:0055075 "potassium ion homeostasis" evidence=IMP
GO:0071805 "potassium ion transmembrane transport" evidence=IMP
TAIR|locus:2028170 CCC1 "cation-chloride co-transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SCL6 F1SCL6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0261794 kcc "kazachoc" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090218-27 slc12a4 "solute carrier family 12 (potassium/chloride transporters), member 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZK3 SLC12A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H2X9 SLC12A5 "Solute carrier family 12 member 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1862037 Slc12a5 "solute carrier family 12, member 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620811 Slc12a5 "solute carrier family 12 (potassium-chloride transporter), member 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A8KC65 SLC12A5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Z0E2CCC1_ORYSJNo assigned EC number0.86430.96020.6602yesno
Q2UVJ5CCC1_ARATHNo assigned EC number0.86210.95440.6656yesno
Q657W3CCC2_ORYSJNo assigned EC number0.82110.95730.6549yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CCC1
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (1005 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query680
TIGR00930953 TIGR00930, 2a30, K-Cl cotransporter 0.0
pfam00324473 pfam00324, AA_permease, Amino acid permease 2e-25
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 4e-14
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 2e-09
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 4e-09
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 0.003
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter Back     alignment and domain information 
 Score =  854 bits (2209), Expect = 0.0
 Identities = 258/726 (35%), Positives = 376/726 (51%), Gaps = 103/726 (14%)

Query: 28  GITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSAS 87
           G  GL  + F +N           GIP P G     F +L G+FFP+VTGI+AG+N S  
Sbjct: 258 GFFGLGNEIFSEN--------FIPGIPGPEG----GFFSLFGIFFPSVTGILAGANISGD 305

Query: 88  LKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL--------------------- 126
           LKD Q++IP GTL A LTTT +Y+ SV+LFGA   R+                       
Sbjct: 306 LKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECA 365

Query: 127 -------LTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVL 179
                  L + L   ++  PFP +I  GI  +TL +AL SL  APRL  A+  D+I P L
Sbjct: 366 HNTCSYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFL 425

Query: 180 NYFKVAEGR--EPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDL 237
            +F    G+  EP  A   TAFI  G ++I  L+ I P I+ FFL  Y+ +N SCF   L
Sbjct: 426 QFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPIISNFFLASYALINFSCFHASL 485

Query: 238 LDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDW 297
           L +P WRPR+K++HW LSLLG+  C  IMFLISW   +V++ +A  +Y YV  K    +W
Sbjct: 486 LRSPGWRPRFKYYHWWLSLLGASLCCAIMFLISWWAALVAMVIALFLYKYVTYKKPDVNW 545

Query: 298 GDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCM 357
           G   ++  + LAL SL  L   + H KNW P  L+   P         C P L DFA+  
Sbjct: 546 GSSTQALSYSLALYSLLRLEEVEDHVKNWRPQCLVLTGPP-------VCRPALLDFASQF 598

Query: 358 KKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGI 417
             KG+G+ I  S++ G   EC ++A+ A  ++ T+++  + +    +VVA ++ EG R +
Sbjct: 599 -TKGKGLMICGSVIQGPRLECVKEAQAAEAKIQTWLEKNKVKAFYAVVVADDLREGVRHL 657

Query: 418 VQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNE 477
           +Q  GLG +KPN +VM Y + WR+        T++GII+D   A+ AVV+V+  +  P  
Sbjct: 658 IQASGLGRMKPNTLVMGYKKDWRQAE-PRAWETYIGIIHDAFDAHLAVVVVRNSEGLPIS 716

Query: 478 Y--------------------------------------QRQY-GTIDLYWIVRDGGLML 498
                                                  ++Q  GTID++W+V DGGL L
Sbjct: 717 VLQVQEELENDCSEDSIELNDGKISTQPDMHLEASTQFQKKQGKGTIDVWWLVDDGGLTL 776

Query: 499 LLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQ 558
           LL  LL TK+ ++ CKI++F  A++D  +E  K D+   LY  R+ AEVIV+ M      
Sbjct: 777 LLPYLLTTKKVWKKCKIRIFVGAQKDDRSEQEKKDMATLLYKFRIDAEVIVVLMDI---- 832

Query: 559 TENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNE---QQVEKFL 615
             N   Q ES++AF       + +  E   EA     P M   KP  + +   Q   +  
Sbjct: 833 --NAKPQTESMEAFEEMIRPFRLHKTEKDREA---KDPKMTWTKPWKITDAELQSNVRKS 887

Query: 616 YTTLKLNSTILRHSRMAAVVLVSLPPPPIN-HPAYCYMEYMDLLVENVPRLLIVRGYRRD 674
           Y  ++LN  +L +SR AA+V++SLP P     P   YM ++++L E++P +L+VRG  R+
Sbjct: 888 YRQVRLNELLLEYSRDAALVVLSLPVPRKGSIPDELYMAWLEVLSEDLPPVLLVRGNHRN 947

Query: 675 VVTLFT 680
           V+T ++
Sbjct: 948 VLTFYS 953

[Transport and binding proteins, Other]. Length = 953
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 680
KOG20821075 consensus K+/Cl- cotransporter KCC1 and related tr 100.0
TIGR00930953 2a30 K-Cl cotransporter. 100.0
KOG1288945 consensus Amino acid transporters [Amino acid tran 100.0
KOG2083643 consensus Na+/K+ symporter [Inorganic ion transpor 100.0
TIGR00906557 2A0303 cationic amino acid transport permease. 99.95
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.93
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.93
PRK10655438 potE putrescine transporter; Provisional 99.93
PRK10644445 arginine:agmatin antiporter; Provisional 99.93
TIGR00911501 2A0308 L-type amino acid transporter. 99.93
TIGR00909429 2A0306 amino acid transporter. 99.93
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.93
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.93
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.92
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.92
PRK15049499 L-asparagine permease; Provisional 99.92
PRK11387471 S-methylmethionine transporter; Provisional 99.92
PRK11021410 putative transporter; Provisional 99.92
TIGR00913478 2A0310 amino acid permease (yeast). 99.92
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.92
COG0833541 LysP Amino acid transporters [Amino acid transport 99.91
PRK10836489 lysine transporter; Provisional 99.91
PRK10580457 proY putative proline-specific permease; Provision 99.91
PRK10746461 putative transport protein YifK; Provisional 99.91
PRK10249458 phenylalanine transporter; Provisional 99.91
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.91
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.91
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.9
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.9
PRK10238456 aromatic amino acid transporter; Provisional 99.9
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.9
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.89
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.89
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.88
PRK15238496 inner membrane transporter YjeM; Provisional 99.86
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.85
COG0531466 PotE Amino acid transporters [Amino acid transport 99.83
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.79
KOG1289550 consensus Amino acid transporters [Amino acid tran 99.79
TIGR00837381 araaP aromatic amino acid transport protein. aroma 98.81
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.43
TIGR00912359 2A0309 spore germination protein (amino acid perme 96.68
PF1390651 AA_permease_C: C-terminus of AA_permease 96.55
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 95.96
COG0814415 SdaC Amino acid permeases [Amino acid transport an 95.25
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 94.78
PRK10483414 tryptophan permease; Provisional 94.43
PHA02764399 hypothetical protein; Provisional 93.86
TIGR00814397 stp serine transporter. The HAAAP family includes 93.84
PLN03074473 auxin influx permease; Provisional 93.8
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 93.74
PRK15132403 tyrosine transporter TyrP; Provisional 93.6
KOG1303437 consensus Amino acid transporters [Amino acid tran 93.2
KOG20821075 consensus K+/Cl- cotransporter KCC1 and related tr 92.91
PTZ00206467 amino acid transporter; Provisional 92.83
cd01987124 USP_OKCHK USP domain is located between the N-term 92.57
PRK09664415 tryptophan permease TnaB; Provisional 92.29
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 91.92
PRK11375484 allantoin permease; Provisional 91.09
PLN00149779 potassium transporter; Provisional 90.72
KOG1305411 consensus Amino acid transporter protein [Amino ac 89.58
TIGR00794688 kup potassium uptake protein. Proteins of the KUP 89.55
KOG1304449 consensus Amino acid transporters [Amino acid tran 88.92
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 88.69
PRK11017404 codB cytosine permease; Provisional 87.65
PLN00150779 potassium ion transporter family protein; Provisio 87.05
PLN00151852 potassium transporter; Provisional 86.86
PLN00148785 potassium transporter; Provisional 85.87
cd00293130 USP_Like Usp: Universal stress protein family. The 85.83
COG1457442 CodB Purine-cytosine permease and related proteins 84.61
COG3949349 Uncharacterized membrane protein [Function unknown 81.1
PRK10745622 trkD potassium transport protein Kup; Provisional 80.89
PF00582140 Usp: Universal stress protein family; InterPro: IP 80.02
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-132  Score=1068.69  Aligned_cols=667  Identities=42%  Similarity=0.722  Sum_probs=583.9

Q ss_pred             cccccchhhhHhhhhhhhhhhcccccccccccccccCCCcccCCC--------CCCCC------CCCcchhHHHHHHHHH
Q 005728            6 FLLGACCMEYDSLFLSFYFYTAGITGLKLKTFKDNWFSDYQKTNN--------AGIPD------PNGAVDWSFNALVGLF   71 (680)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~N~~~~~~~~~~--------~g~~~------~~g~~~~~f~~~~~i~   71 (680)
                      +..++.|++|++.  .++..+.||+|+.+++|.+|+||.|...+.        .+.+.      ..++..++|...++++
T Consensus       342 ~~~~~~c~~y~~~--nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIf  419 (1075)
T KOG2082|consen  342 NNDSATCDEYFSK--NNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIF  419 (1075)
T ss_pred             CCCCccccccccc--ccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhh
Confidence            4567999999965  888999999999999999999999954321        11111      1345678999999999


Q ss_pred             HHhhhhhhhhhcccccccccccChhHHHHHHHHHHHHHHHHHHHHHhcccc----hhhH---hHhHHHHhhccchhHHHH
Q 005728           72 FPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAAT----REEL---LTDRLLTATIAWPFPAVI  144 (680)
Q Consensus        72 f~af~G~e~~a~~s~E~knP~r~IP~a~~~ai~i~~v~Yil~~~~~g~~~~----~~~~---~~~~~~~~~~~~~~~~ii  144 (680)
                      |||+|||++++|+||++|||+|+||.|++.|++++..+|+..++++|++..    +|..   ..+.++.+.++||.+|++
T Consensus       420 FPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi  499 (1075)
T KOG2082|consen  420 FPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVI  499 (1075)
T ss_pred             ccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceee
Confidence            999999999999999999999999999999999999999998898998876    4443   333556778899999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCcccccccc-CCCCchHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 005728          145 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVA-EGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLL  223 (680)
Q Consensus       145 ~ig~~~s~lss~~~~l~~~sR~l~amArDg~lP~~~~~~~~-k~~~P~~Aill~~~i~~i~~l~~~~~~i~~l~s~~~l~  223 (680)
                      .+|.++|++|++++++.++||+|||+|||+++|....++|. ++|+|.+|+++|.+||...+++++++.++++.++|||+
T Consensus       500 ~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLM  579 (1075)
T KOG2082|consen  500 VIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLM  579 (1075)
T ss_pred             ehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987767665 57899999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHhhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhH
Q 005728          224 CYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKS  303 (680)
Q Consensus       224 ~y~li~~a~~~lr~~~~p~~rp~fk~~~~~~~llg~v~~~~~~~~i~~~~~~i~~~i~~~iy~~~~~~~~~~~wg~~~~~  303 (680)
                      +|.++|++|.+....+.|+|||+|||+||.++++|+.+|+++||..+|.++++++.++.++|.|+.||+.+++|||..++
T Consensus       580 CY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SWyyAlvAm~~a~~IYKYiEykGAeKEWGDGiRG  659 (1075)
T KOG2082|consen  580 CYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSWYYALVAMLIAGVIYKYIEYKGAEKEWGDGIRG  659 (1075)
T ss_pred             HHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcCCceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccchHHHH
Q 005728          304 AYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAK  383 (680)
Q Consensus       304 ~~~~~~~~~l~~l~~~~~~~k~~RPqiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~~~~~~  383 (680)
                      +.++.||++|+++++.++|+||||||+||+...   .++..++++.|++|++|+| .|+|+.+++++++|++.+...+++
T Consensus       660 lsLtaArysLlrlEegpPH~KNWRPQlLVll~~---~~~~~vk~p~ll~~asqlK-aGkGltIv~s~l~G~~~e~~~~a~  735 (1075)
T KOG2082|consen  660 LSLSAARYSLLRLEEGPPHPKNWRPQLLVLLRL---DEDIDVKHPRLLNFASQLK-AGKGLTIVGSVLQGTFLEDKGEAQ  735 (1075)
T ss_pred             HHHHHHHHHHHhcccCCCCCCCCCceeeeeecc---cchhchhhhhHhhHHHHhh-cCCCeEEEEEeecCCchhhhHHHH
Confidence            999999999999999999999999999999863   2445678999999999998 789999999999999988888888


Q ss_pred             HHHHHHHHHhhhccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHHHhccc
Q 005728          384 TACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANK  463 (680)
Q Consensus       384 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~~~~~  463 (680)
                      +++++++..++.+|+++|+++++++++++|+++++|+.|||+|||||++||||..||+++..+.+..|+++++++...++
T Consensus       736 ~a~~t~~~~m~~~r~~Gf~q~vv~~~ir~g~s~liQs~GlGglkpNtvl~~wP~~wr~e~~~~~~~tFi~~v~~~~a~~~  815 (1075)
T KOG2082|consen  736 RAEETIRTLMEAERVKGFAQTVVASNLREGISHLIQSCGLGGLKPNTVLMGWPEGWRQEEDPREWKTFIETVRDTTAAHL  815 (1075)
T ss_pred             HHHHHHHHHHhHHHhhhhhhhhcccchhhhhhhceeeccccCccCceEEEeCcchhcccccchHHHHHHHHHHHhhccce
Confidence            88899999999999999999999999999999999999999999999999999999999888888999999999999999


Q ss_pred             eEEEEcCCCCCCcccccCCCcceeEEEecCChHHHHHHHHhccCCCcCCCeeEEEEeecCcchHHHHHHHHHHHHHhccc
Q 005728          464 AVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRM  543 (680)
Q Consensus       464 ~v~i~r~~~~~p~~~~~~~g~IDvwW~~~dGgL~Lll~~lL~~~~~W~~~klRvf~~~~~~~~~~~~~~~l~~ll~~~RI  543 (680)
                      ++++.||++.||.+.++..|+|||||++||||++||+||+|++|++||+||+|+|++++.+++.++||++++++++++||
T Consensus       816 al~v~K~i~~fP~~~er~~G~IDvwWIVhDGG~lmLl~~LL~qhkvwr~C~~rif~vaq~~dns~~mk~dl~~flY~LRi  895 (1075)
T KOG2082|consen  816 ALLVAKGIDDFPSNVERFSGHIDVWWIVHDGGMLMLLPFLLRQHKVWRKCKMRIFTVAQEDDNSIQMKKDLQKFLYHLRI  895 (1075)
T ss_pred             eEEEecCcccCchhhhhhcCceeEEEEEecCchHHHHHHHHHHHHHHhhceeeEEEEeeccCcHHHHHHHHHHHHHhhcc
Confidence            99999999999999998889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEecCCcccccc---------CCCCChhhHHHHHHHHHhH---hh---------------------------hHH
Q 005728          544 QAEVIVISMKSWDEQTE---------NGPQQDESLDAFIAAQHRI---KN---------------------------YLA  584 (680)
Q Consensus       544 ~aev~vi~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~~---------------------------~~~  584 (680)
                      +|||.|+++.++|++.+         ++++..+.++.+.+.+++.   .+                           .|.
T Consensus       896 ~Aev~vVem~~~dis~~~~ertl~mE~rsq~~~~m~~~k~~~~r~~l~~d~~~~~~~~s~~s~~~~~~~~~~~~~~~~~t  975 (1075)
T KOG2082|consen  896 DAEVEVVEMHDSDISAYTYERTLMMEQRSQMLRQMRLSKNERERAQLIHDRNAPRRPSSLHSDEARPFETAPTKVQMTWT  975 (1075)
T ss_pred             cceEEEEEecchhhhHHHHHHHHHHHhhHHHHHHHHhhhhhhhccccchhcCCccccccccccccccCCCCCcceechhh
Confidence            99999999999988753         1111112222222211110   00                           000


Q ss_pred             HhhHhhhhcCCC--CCCCCCC---cccChHHHHHHHHHhHHHHHHHHhcCCCccEEEEeCCCCCCCC-CchhhHhHHHHH
Q 005728          585 EMKAEAQKSGTP--LMADGKP---VVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINH-PAYCYMEYMDLL  658 (680)
Q Consensus       585 ~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~lneli~~~S~~a~Lv~~~LP~p~~~~-~~~~Ym~~le~l  658 (680)
                      ..+..+ ...++  .....++   .+. ++...++||+++||||+|++||+||+||++|||.||++. .+..||+|||+|
T Consensus       976 ~~k~~~-~~~~~~~~~~~~k~~~~~~~-~~snv~~mhTavkLN~vi~~~S~~a~lvLlnlP~PP~n~~~~~~Ymeylevl 1053 (1075)
T KOG2082|consen  976 RDKYMA-STSNPAFSLSGFKDLFSMKP-DQSNVRRMHTAVKLNEVILNKSRDAQLVLLNLPGPPRNRQGDENYMEYLEVL 1053 (1075)
T ss_pred             hhhHHH-hccCCcchhccCCcccccCh-hhHHHHHHHHHHHHHHHHHhcCccccEEEecCcCCCCCCcchhhHHHHHHHH
Confidence            000000 00011  1111111   112 234446699999999999999999999999999999996 468999999999


Q ss_pred             hcCCCceEEEccCCceeeeecC
Q 005728          659 VENVPRLLIVRGYRRDVVTLFT  680 (680)
Q Consensus       659 t~~lpp~llVrG~~~~VlT~ys  680 (680)
                      |++|||||||||.|+||||+||
T Consensus      1054 te~l~Rvl~VrG~greViTi~s 1075 (1075)
T KOG2082|consen 1054 TEGLPRVLLVRGGGREVITIYS 1075 (1075)
T ss_pred             HcCCCeEEEEccCCceEEEecC
Confidence            9999999999999999999998

>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query680
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 1e-19
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 2e-16
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 2e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 5e-09
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Length = 294 Back     alignment and structure
 Score = 88.7 bits (219), Expect = 1e-19
 Identities = 30/264 (11%), Positives = 75/264 (28%), Gaps = 31/264 (11%)

Query: 312 SLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSIL 371
           + ++        + W    L+         E+        DF   +    +G    + + 
Sbjct: 5   AKKTNSLTSSSERTWKANLLVP-------VEDPRELMGTFDFLRDITY-PKGSVKLLGLA 56

Query: 372 DGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIV 431
                E           ++     +       I+      E     ++ +     +P+I+
Sbjct: 57  GNTDKENLLSQL---PSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSIL 113

Query: 432 VMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIV 491
            +R PE   R            II    +    V++     + P     +   I+L+   
Sbjct: 114 FLRLPENRDR------DEEIREIIRKASMYRMGVLL---FSKHPQAGLGRQNLINLWIEN 164

Query: 492 RD---------GGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLR 542
           R          G + L L      K ++++  +     A     A+  +  ++      R
Sbjct: 165 RGLDWDISMELGNMDLALLIAYKLKSNWKA-SLSFMTFAPTAIQAQAAENFLQSLAELAR 223

Query: 543 MQAEVIVISMKSWDEQTENGPQQD 566
           +    + +  ++   ++   P   
Sbjct: 224 IPNVKMQVLREN-PIKSSKLPFAS 246
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query680
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 100.0
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.93
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.93
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.91
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 93.5
3loq_A294 Universal stress protein; structural genomics, PSI 89.69
3mt0_A290 Uncharacterized protein PA1789; structural genomic 88.71
3olq_A319 Universal stress protein E; structural genomics, P 81.01
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 80.58
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure
Probab=100.00  E-value=1.8e-38  Score=319.23  Aligned_cols=263  Identities=14%  Similarity=0.161  Sum_probs=199.2

Q ss_pred             HHHhcCCCCCCCCCcCCceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCccchHHHHHHHHHHHH
Q 005728          312 SLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLAT  391 (680)
Q Consensus       312 ~l~~l~~~~~~~k~~RPqiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~  391 (680)
                      ...++.  .+++|||||++||+++.|       ..+..|++|++.++ +++|++.+++|+..+..+..  .++ .+.+++
T Consensus         7 ~~~~~~--~~~~knWrP~iLV~sg~p-------~~~~~li~la~~lt-~~~G~ltv~~i~p~~~~~~l--~~q-l~~l~~   73 (294)
T 3g40_A            7 KTNSLT--SSSERTWKANLLVPVEDP-------RELMGTFDFLRDIT-YPKGSVKLLGLAGNTDKENL--LSQ-LPSISE   73 (294)
T ss_dssp             --------------CCCEEEEEESCH-------HHHHHHHHHHHHHH-TTTCEEEEEECC---CTTCH--HHH-HHHHHH
T ss_pred             HHhcCC--CCCccCCCCcEEEecCCc-------hhhhhHHHHHHHhc-cCceeEEEEEEccCCCccHH--HHH-HHHHHH
Confidence            334444  468999999999999754       35789999999999 67999999999755422210  222 377899


Q ss_pred             HhhhccccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHHHhccceEEEEcCC
Q 005728          392 YIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGL  471 (680)
Q Consensus       392 ~~~~~~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~~~~~~v~i~r~~  471 (680)
                      +++++++.+|++++.++|+.+|+..++|++|+|+++||||+||||++..      ..++|+++++.+..+++||++++.-
T Consensus        74 ~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e------~~~~y~~~i~~~~~~~~nVlil~~~  147 (294)
T 3g40_A           74 GFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD------RDEEIREIIRKASMYRMGVLLFSKH  147 (294)
T ss_dssp             HHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG------GHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             HHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh------hhHHHHHHHHHHHHhCceEEEEecC
Confidence            9999999999999999999999999999999999999999999997642      3368999999999999999999742


Q ss_pred             CCCCcccccCCCcceeE-------EE----ecCChHHHHHHHHhccCCCcCCCeeEEEEeecCcchHHHHHHHHHHHHHh
Q 005728          472 DEWPNEYQRQYGTIDLY-------WI----VRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYD  540 (680)
Q Consensus       472 ~~~p~~~~~~~g~IDvw-------W~----~~dGgL~Lll~~lL~~~~~W~~~klRvf~~~~~~~~~~~~~~~l~~ll~~  540 (680)
                         |+....++++||||       |.    ..||+||+++||+|+++  | +++||+.++++++++.+++++.|++|++.
T Consensus       148 ---~~~~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~n--W-~A~I~L~~vV~de~a~~~a~~~l~~Lv~~  221 (294)
T 3g40_A          148 ---PQAGLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSN--W-KASLSFMTFAPTAIQAQAAENFLQSLAEL  221 (294)
T ss_dssp             ---TTTTTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHH--H-TCEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ---CccCCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhC--c-CCeEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence               33334456899999       72    57999999999999886  8 99999999999999999999999999999


Q ss_pred             cccccEEEEEecCCccccccCCCCChhhHHHHHHHHHhHhhhHHHhhHhhhhcCCCCCCCCCCcccChHHHHHHHHHhHH
Q 005728          541 LRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLK  620 (680)
Q Consensus       541 ~RI~aev~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (680)
                      +||.|+..+|. .+++                                                                
T Consensus       222 ~Ri~a~~~vv~-~~F~----------------------------------------------------------------  236 (294)
T 3g40_A          222 ARIPNVKMQVL-RENP----------------------------------------------------------------  236 (294)
T ss_dssp             HTCCSCEEEEE-SSCT----------------------------------------------------------------
T ss_pred             hcCCceEEEec-CchH----------------------------------------------------------------
Confidence            99999987663 2211                                                                


Q ss_pred             HHHHHHhcCCCccEEEEeCCCCCCCCCchhhHhHHHHHhcCC-CceEEEccCCce
Q 005728          621 LNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENV-PRLLIVRGYRRD  674 (680)
Q Consensus       621 lneli~~~S~~a~Lv~~~LP~p~~~~~~~~Ym~~le~lt~~l-pp~llVrG~~~~  674 (680)
                        |+|++ |++|+|+|+.||.-++       .+.++.+++.. .-+||||++|+|
T Consensus       237 --~il~~-s~~ADL~flGl~~~~d-------f~~~~~~~~~~~ssc~f~~dsg~e  281 (294)
T 3g40_A          237 --IKSSK-LPFASLHIFSLDPNPD-------LDLARHLMEKAGSSCIFALDSGEE  281 (294)
T ss_dssp             --TTSSS-CCCCSEEEEECCSSCC-------HHHHHHHHHHHTSEEEEEECCSCC
T ss_pred             --HHHhh-CcCCCEEEEcCCCCCc-------HHHHHHHHHhcCCeEEEEecCchh
Confidence              12233 5789999999966553       45566666555 378999999987
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query680
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 86.5
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 85.47
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=86.50  E-value=2.3  Score=35.17  Aligned_cols=122  Identities=7%  Similarity=-0.001  Sum_probs=77.5

Q ss_pred             ceEEeeCCCCCCCCCCCCchhHhhhHHHhhhCCCeeEEEEEEEeCCCcc-------chHHH-----HHHHHHHHHHhhhc
Q 005728          329 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHE-------CAEDA-----KTACKQLATYIDYK  396 (680)
Q Consensus       329 qiLv~~~~~~~~~~~~~~~~~L~~fa~~l~k~~~g~~~~~~v~~~~~~~-------~~~~~-----~~~~~~~~~~~~~~  396 (680)
                      .|||.++..       +....++++|.++.+...+-+.++||++.....       ..++.     ++..+.+....++.
T Consensus         4 ~ILv~vD~s-------~~s~~al~~A~~~a~~~~~~v~~lhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (140)
T d1jmva_           4 HILVAVDLS-------EESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESV   76 (140)
T ss_dssp             EEEEEECCS-------TTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHS
T ss_pred             eEEEEECCC-------HHHHHHHHHHHHHHHHcCCeEEEEEEeeecccccccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            478887532       234567899988887655667788987543210       01111     12344556666677


Q ss_pred             cccceEEEEecCCHHHHHHHHHHHcCCCCCcccEEEccCcchhcccccCCCchhHHHHHHHHH-hccceEEEEcC
Q 005728          397 RCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCI-VANKAVVIVKG  470 (680)
Q Consensus       397 ~~~~f~~~~~~~~~~~g~~~liq~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~-~~~~~v~i~r~  470 (680)
                      +.......+...+..+.+....+.     ...+.|+||-..+.        ...+..+.+.++ ..++.|++.|.
T Consensus        77 ~~~~~~~~~~~~~~~~~I~~~a~~-----~~~dliV~G~~~~~--------~~~lgs~~~~li~~~~~pVliVp~  138 (140)
T d1jmva_          77 DYPISEKLSGSGDLGQVLSDAIEQ-----YDVDLLVTGHHQDF--------WSKLMSSTRQVMNTIKIDMLVVPL  138 (140)
T ss_dssp             SSCCCCEEEEEECHHHHHHHHHHH-----TTCCEEEEEECCCC--------HHHHHHHHHHHHTTCCSEEEEEEC
T ss_pred             CCceEEEEEEecCHHHHHHHhhhh-----chhhEEEeccCCCC--------CCCcccHHHHHHhccCCCEEEEec
Confidence            777777778888999999999997     56899999954321        112334444444 35677888764
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure