Citrus Sinensis ID: 005736

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680
Protein Sequence
MARSRRKKGARSFALNVEQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLSGHIQNSKSSMASNLRVP
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccHHHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEcccccEEEEEEEEEcccccEEEEEEEEEEEccccEEEEEEEEcccccEEEEEEEEEEEEEEEEEEEEEccccEEEEEEccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHcEEccEEEEEEccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEEccccccccccEEEEEEEccccEEEEEEEEEccccccccccEEEEEEcccccccccEEEccccccccccccccccccccEEEcccccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEEccEEEEEEcccccccccccEEEEEEEccccEEEEEEEEccccccccEEEEEEEccccccccEEEEEEEcccccccEEEEEEEEEEccccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEccEEEEEEEEEccccccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEcccccEEEEEEEccccEEEEEEEEEEEEEEEEEEEEEEccccccEEEEEEccccEEEEEEEcccccccccHHccccHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEEcccccccccEEEEEEEcccccEEEEEEEEcccccccccccEEEEEHHHccccccEEEEcccccccEEEHHHHcccccccccccccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEEccEEEEEEEEccccccccEEEEEEccccccEEEEEEEEcccccccccEEEEEEHHHHcccccccEEEEcccccccEEEEEEEEEEcccccccccccccccccEEEEEEEEcccccccccccccccEEEEEEccEEEEEEEEEccccccccccEEEEEcccccc
Coil and Loop (DISEMBL)
marsrrkkgaRSFALNVEQVVEFWKNLleekpllpfvIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQYQHRIHVEELNKKWNQIIlktspitpleHCEWLNKLLMEVwpgyinpklsiRFSQIVEKRLKHRKPRLIEKielqefslgstspclglhgtrwsssgdQRVMQlgfdwdanDISILLLAKLAKPLLGTAKIVINSLhikgdllvmpiLEGKAVLYsfvsipdvrigvafgsggsqslpatelpgvSNWLARLINETLVKTLveprrrcyslpavdlrkkAVGGIVYVRVISASKlsrsslrgspsrrqqnysadssleehyedkdlTTFVEIELEELtrrtdarpgsdprwdsMFNMVLHeetgtvrfnlyecipghvkydYLTSCEVKMKyvaddsttfwaigpdsgiiakhaefcgdevemtvpfegvnsgELTVRLVLKEwqfsdgshslnnfhsgsqqslsgssnfisrtgrkinvtvvegkdlmpkdksgkcdpyvklqygkivqrtrtahspnhvwnqkfeldeigggeclmvkcyneeifgdenmgsarvnleglvegsvrdiwvplekvntgelRLQIEatrvddnegsrgqnigsgnGWIELVIVEARDLVAadlrgtsdpyvkvqygdlkkrtKLTVACLSghiqnskssmasnlrvp
Flexible Loop (DISEMBL)
marsrrkkgarsfalnVEQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEkielqefslgstspCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLvktlveprrrcyslpavdlrkkavggIVYVRVIsasklsrsslrgspsrrqqnysadssleehyedkdlTTFVEIEleeltrrtdarpgsdprwDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSgsqqslsgssnfisrtgrkinvtvvegkdlmpkdksgkcdpyVKLQYGKIVQrtrtahspnhvwnQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLekvntgelrlqieatrvddnegsrgqnigsgngWIELVIVEARDLVAadlrgtsdpyvkvqygdlkkRTKLTVACLsghiqnskssmasnlrvp
Low Complexity Region (SEG)
MARSRRKKGARSFALNVEQVVEFWKNLLEEKpllpfviplvlllwvFERWLFSFSNWVPLAIAVWATVQYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISIlllaklakpllgtakIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVrvisasklsrsslrgspsrrQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHsgsqqslsgssNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLSGHIQNSKSSMASNLRVP
Disordered region (IsUnstruct)
************FALNVEQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVIS***********************************TTFVEIEL****************WDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFS*****************************KINVTVVEG**********KCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATR***********IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLSGH***************
Disordered Region (DISOPRED)
*******************VVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQYQHRIHVEEL*KKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTV*F*****GELTVRLVLK**************************NFISRTGRKINVTVVEGKDLM****SGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATR***************NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLSGHIQNSKSSMASNLRV*
Disordered Region (DISEMBL)
***********SFALNVEQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKL**************************EDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHS*********SNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLSGHIQN************
Disordered Region (DISPRO)
***********SFALNVEQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLS***********************HYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSD************************RTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLSGHIQNSKSSMASNLRVP
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARSRRKKGARSFALNVEQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLSGHIQNSKSSMASNLRVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	680	2.2.26 [Sep-21-2011]
A0JJX5	569	Synaptotagmin-4 OS=Arabid	no	no	0.664	0.794	0.238	1e-13
Q8L706	560	Synaptotagmin-5 OS=Arabid	no	no	0.629	0.764	0.216	7e-13
Q9UT00	1225	Uncharacterized protein P	yes	no	0.336	0.186	0.265	1e-08
Q93XX4	751	C2 domain-containing prot	no	no	0.397	0.359	0.244	1e-08
P27715	2155	Phorbol ester/diacylglyce	no	no	0.172	0.054	0.326	3e-08
Q5M7N9	889	Extended synaptotagmin-3	no	no	0.160	0.122	0.327	4e-08
Q5DTI8	891	Extended synaptotagmin-3	no	no	0.201	0.153	0.303	6e-07
Q6PFQ7	802	Ras GTPase-activating pro	no	no	0.161	0.137	0.270	8e-07
Q9Z1N9	1602	Protein unc-13 homolog B	no	no	0.176	0.074	0.305	8e-07
Q62769	1622	Protein unc-13 homolog B	no	no	0.176	0.073	0.305	9e-07

>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 129/542 (23%), Positives = 227/542 (41%), Gaps = 90/542 (16%)

Query: 100 EHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLG 159
           +   WLN  L ++WP Y+N   S      VE  L+   P ++  ++  +F+LG+ +P   
Sbjct: 69  QKLNWLNLELEKIWP-YVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLGTVAPQFT 127

Query: 160 LHGTRWSSSGDQRV-MQLGFDWDANDISILLLAKLAKPLLGTA-KIVINSLHIKG--DLL 215
                 S SG   + M+L   WD N   +L +    K LLG +  I + ++   G   L+
Sbjct: 128 GVSILESESGPNGITMELEMQWDGNPKIVLDV----KTLLGVSLPIEVKNIGFTGVFRLI 183

Query: 216 VMPILEGKAVLYSFVSIPDVRIGVAFG---SGGSQSLPATELPGVSNWLARLINETLVKT 272
             P+++      +       + G+ F     GG      T +PG+S+ +   I + +  +
Sbjct: 184 FKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGE----LTSIPGISDAIEETIRDAIEDS 239

Query: 273 LVEPRRRCYS-LPA--VDLRKKAVGGIVYVRVISASKLSRSSLRGS------------PS 317
           +  P R+    LP    DL  K VG +  V+V+ A  L+   + G             P 
Sbjct: 240 ITWPVRKIIPILPGDYSDLELKPVGKL-DVKVVQAKDLANKDMIGKSDPYAIVFIRPLPD 298

Query: 318 RRQQNYSADSSL----EEHYEDKDLTTFV--EIELEELTRRT--DARPGSDPRWDSMFNM 369
           R ++  +  +SL     EH+E      F+  ++  + LT R   D   GS          
Sbjct: 299 RTKKTKTISNSLNPIWNEHFE------FIVEDVSTQHLTVRVFDDEGVGS---------- 342

Query: 370 VLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDS---GIIAKHA 426
              +  G  +  L E +PG VK       ++ +K V D       I  D+   G +    
Sbjct: 343 --SQLIGAAQVPLNELVPGKVK-------DIWLKLVKD-----LEIQRDTKNRGQVQLEL 388

Query: 427 EFC--GDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFIS 484
            +C  G E  +  PF    S  +  +++  E + SD +          +   S   + I 
Sbjct: 389 LYCPLGKEGGLKNPFNPDYSLTILEKVLKPESEDSDATDM-------KKLVTSKKKDVIV 441

Query: 485 RTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP---NHVWNQKFE-L 540
           R    ++VTVV  +DL   D  GK D +V +   K   +++T   P   N VWNQ F+ +
Sbjct: 442 RG--VLSVTVVAAEDLPAVDFMGKADAFVVITLKKSETKSKTRVVPDSLNPVWNQTFDFV 499

Query: 541 DEIGGGECLMVKCYNEEIFGDENMGSARVNL-EGLVEGSVRDIWVPLEKVNTGELRLQIE 599
            E    + L ++ ++ + FG + +G   + L   ++EG  ++ W  L+   +G+L + ++
Sbjct: 500 VEDALHDLLTLEVWDHDKFGKDKIGRVIMTLTRVMLEGEFQE-WFELDGAKSGKLCVHLK 558

Query: 600 AT 601
            T
Sbjct: 559 WT 560

May be involved in membrane trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 120/554 (21%), Positives = 217/554 (39%), Gaps = 126/554 (22%)

Query: 100 EHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCL- 158
           +   WLN  L ++WP Y++   S      VE  L+  +P ++  +   + +LG+ +P   
Sbjct: 69  QKLTWLNHHLTKIWP-YVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLGTVAPQFT 127

Query: 159 GLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTA-KIVINSLHIKG--DLL 215
           G+       +G    ++L   WD N   +L +    K L+G +  I + ++   G   L+
Sbjct: 128 GVSVIDGDKNG--ITLELDMQWDGNPNIVLGV----KTLVGVSLPIQVKNIGFTGVFRLI 181

Query: 216 VMPILEGKAVLYSFVSIP-------DVRIGVAFGSGGSQSLPATELPGVSNWLARLINET 268
             P++E     +  VS+        D  + V  G         + +PG+S  +   I + 
Sbjct: 182 FRPLVEDFPC-FGAVSVSLREKKKLDFTLKVVGGD-------ISAIPGLSEAIEETIRDA 233

Query: 269 LVKTLVEPRRRCYSLPAV-----DLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNY 323
           +  ++  P R+   +P +     DL  K VG ++ V+++ A  L+   L G         
Sbjct: 234 VEDSITWPVRKV--IPIIPGDYSDLELKPVG-MLEVKLVQAKNLTNKDLVGK-------- 282

Query: 324 SADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEET-------- 375
                      D     F+    E+  R        +P W+  F  V+ + +        
Sbjct: 283 ----------SDPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRI 332

Query: 376 ------------GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIA 423
                       G  +  L E  PG VK       +V +K V D                
Sbjct: 333 YDDEGVQASELIGCAQIRLCELEPGKVK-------DVWLKLVKD---------------- 369

Query: 424 KHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSL------- 476
                      + +  +  N GE  V L L    +  G+  +N F + S  SL       
Sbjct: 370 -----------LEIQRDTKNRGE--VHLELLYIPYGSGNGIVNPFVTSSMTSLERVLKND 416

Query: 477 -SGSSNFISRTGRKI------NVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRT--- 526
            +   N  SR  + +      +VTV+  +++  +D  GK DPYV L   K   +++T   
Sbjct: 417 TTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRVV 476

Query: 527 AHSPNHVWNQKFE-LDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVP 585
             S N VWNQ F+ + E G  + L+++ ++ + FG + +G   + L  ++       W P
Sbjct: 477 NDSLNPVWNQTFDFVVEDGLHDMLVLEVWDHDTFGKDYIGRCILTLTRVIMEEEYKDWYP 536

Query: 586 LEKVNTGELRLQIE 599
           L++  TG+L+L ++
Sbjct: 537 LDESKTGKLQLHLK 550

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UT00|YKH3_SCHPO Uncharacterized protein PYUK71.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPYUK71.03c PE=1 SV=1

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 115/283 (40%), Gaps = 54/283 (19%)

Query: 100 EHCEWLNKLLMEVWPGYI-NPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCL 158
           E   WLN  L + W  YI  P LS R ++I ++ L    P  I+ + L EF+LG+ SP +
Sbjct: 219 ETVTWLNTFLQQFW--YIFEPSLSERITEITDQILSENVPSFIDSMALSEFTLGTKSPRM 276

Query: 159 GLHGTRWSSSGDQRVMQLGFDWDANDISILL---LAKLAKP----------LLGTAK--I 203
           G   +   +  D  +M L   +  NDIS L    +A   KP           + +AK  +
Sbjct: 277 GFIRSYPKTEEDTVMMDLRLAFSPNDISDLTGREIAACIKPKIALDLKIGKSIASAKMPV 336

Query: 204 VINSLHIKGDLLVMPIL-----EGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVS 258
           +I  L   G+L V   L       K V  +F   P     +    G         +PG++
Sbjct: 337 LIEDLSFTGNLRVKVKLIDKYPYAKTVGLTFTEKPVFSYILKPLGGDKFGFDIGNIPGLT 396

Query: 259 NWLARLINETLVKTLVEPRRR-------------CYSLPAVDLR-------KKAVGGIV- 297
            ++   I+ TL   +  P                  +L AV+ +       K  +GG V 
Sbjct: 397 TFITEQIHNTLGPMMYSPNVYELDIESMMGAAGLNTALGAVEFKLRKGDGFKDGLGGAVD 456

Query: 298 -YV-------RVISASKLSRSSLRGSPSRRQQNYSADSSLEEH 332
            YV       RVI  SK++ ++  GSP   +  YS  +S  E+
Sbjct: 457 PYVVIKNSADRVIGKSKVAHNT--GSPVFNETFYSVLNSFSEN 497

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q93XX4|C2D61_ARATH C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 137/315 (43%), Gaps = 45/315 (14%)

Query: 30  EKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQY----QHRIHVEELNKK 85
           E  L+  +I ++LLLW       S + +  LA+ ++  + + +Y    + ++  EE  + 
Sbjct: 2   ESSLIHHIIIVLLLLWFISSLNRSHAFFYFLAL-IYLYLVHERYVMRLKRKLQFEERKQA 60

Query: 86  WNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIR-FSQIVEKRLKHRKPRLIEKI 144
             + +L  S     E   W+N  + ++WP  +    S +    I+   L+  +P   +K 
Sbjct: 61  NQRRVLSDS-----ESVRWMNYAVEKIWPICMEQIASQKILGPIIPWFLEKYRPWTAKKA 115

Query: 145 ELQEFSLGSTSPCL-GLHGTRWSSSGDQRVMQLGFDW-DANDISILLLAKLAKPL-LGT- 200
            +Q   +G   P L  +   R S+  D  V++LG ++  A+D+S +L  KL K L  G  
Sbjct: 116 VIQHLYMGRNPPLLTDIRVLRQSTGDDHLVLELGMNFLAADDMSAILAVKLRKRLGFGMW 175

Query: 201 AKIVINSLHIKGDLLV-------MPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATE 253
            K+ +  +H++G +L+        P L    V ++      + +   F  G    L    
Sbjct: 176 TKLHLTGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPIFTHG----LDVAV 231

Query: 254 LPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRK--------------KAVGGIVYV 299
           LPG++ WL +L++    +TLV+P     ++  VD+ K              K     V V
Sbjct: 232 LPGIAGWLDKLLSIAFEQTLVQP-----NMLVVDMEKFVSPTSENWFFVDEKEPVAHVLV 286

Query: 300 RVISASKLSRSSLRG 314
            V  AS L  S L G
Sbjct: 287 EVFEASDLKPSDLNG 301

Arabidopsis thaliana (taxid: 3702)

>sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 OS=Caenorhabditis elegans GN=unc-13 PE=1 SV=4

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 24/141 (17%)

Query: 476  LSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP-NHVW 534
            L GSS + +    KI +TV+  + L+ KDK+GK DPYV  Q GK  +RTRT H   N VW
Sbjct: 1149 LEGSSKWSA----KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVW 1204

Query: 535  NQKFELDEIGGGECLMVKCYNEE------------IFGDENMGSARVNLEGLVEGSVRDI 582
            N+KF  +     + + V+ ++E+               D+ +G   + +  L      D+
Sbjct: 1205 NEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDV 1262

Query: 583  WVPLEKVN-----TGELRLQI 598
            W  LEK       +G +RL I
Sbjct: 1263 WYNLEKRTDKSAVSGAIRLHI 1283

May form part of a signal transduction pathway, transducing the signal from diacylglycerol to effector functions. One such function could be the release of neurotransmitter from neurons.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 10/119 (8%)

Query: 490 INVTVVEGKDLMPKDK------SGKCDPYVKLQYGKIVQRTRT-AHSPNHVWNQKFE--L 540
           + + ++E +DL+PKD        GK DPY  L+ G    ++RT   + N  W + +E  +
Sbjct: 350 LRLHLIEAEDLIPKDNYLKGIIRGKSDPYAVLRIGNQNFKSRTIKENLNPKWGEMYEFVV 409

Query: 541 DEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 599
            E+ G + L V  Y+E+   D+ +GS  + LEG+++  V D W PL  V +G + L++E
Sbjct: 410 HEVPGQD-LEVDLYDEDPDKDDFLGSLVIGLEGVMQDRVVDEWFPLSDVPSGSVHLRLE 467

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus tropicalis (taxid: 8364)

>sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 490 INVTVVEGKDLMPKDK----SGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFEL--DE 542
           I V ++E K L  KD      GK DPY K+  G    R+RT + + N  WN+ FE    E
Sbjct: 312 IRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIGLQHCRSRTIYKNLNPTWNEVFEFMVYE 371

Query: 543 IGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATR 602
           + G + L V  Y+E+   D+ +GS ++ L  +++  V D W  L    +G L L++E   
Sbjct: 372 VPGQD-LEVDLYDEDTDKDDFLGSLQICLGDVMKNRVVDEWFALNDTTSGRLHLRLEWLS 430

Query: 603 VDDNEGSRGQNIGSGNGWIELVIVE 627
           +  ++ +  +N    +  I +V +E
Sbjct: 431 LLTDQEALTENDSGLSTAILVVFLE 455

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|Q6PFQ7|RASL2_MOUSE Ras GTPase-activating protein 4 OS=Mus musculus GN=Rasa4 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 12/122 (9%)

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHV-WNQKFELD-EIGGG 546
           ++   V+E +DL PKD++G  DP+V++ Y    Q T       +  WN+ F+ + E G  
Sbjct: 134 RLRCAVLEARDLAPKDRNGASDPFVRVHYNGRTQETSVVKKSCYPRWNETFDFELEKGAS 193

Query: 547 ECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE---------KVNTGELRL 596
           E L+V+ ++ ++   ++ +G   VN++ L      + W  L+         K N G L+L
Sbjct: 194 EALLVEAWDWDLVSRNDFLGKVAVNVQRLCSAQQEEGWFRLQPDQSKSRQGKGNLGSLQL 253

Query: 597 QI 598
           ++
Sbjct: 254 EV 255

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Isoform 2 activates the Ras pathway and promotes RANKL shedding by modulating the expression of MMP14.

Mus musculus (taxid: 10090)

>sp|Q9Z1N9|UN13B_MOUSE Protein unc-13 homolog B OS=Mus musculus GN=Unc13b PE=2 SV=2

 Score = 56.2 bits (134), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 24/144 (16%)

Query: 473 QQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPN 531
           Q  L G+S + +    KI +TVV  + L  KDK+G  DPYV +Q GK  +RT+T   + N
Sbjct: 601 QSVLDGTSKWSA----KITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLN 656

Query: 532 HVWNQKFELDEIGGGECLMVKCYNEEIF------------GDENMGSARVNLEGLVEGSV 579
            VW +KF  +     + + V+ ++E+               D+ +G   + +  L     
Sbjct: 657 PVWEEKFHFECHNSSDRIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTL--SGE 714

Query: 580 RDIWVPLEKVN-----TGELRLQI 598
            D+W  LEK       +G +RLQI
Sbjct: 715 MDVWYNLEKRTDKSAVSGAIRLQI 738

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP) (By similarity). Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses.

Mus musculus (taxid: 10090)

>sp|Q62769|UN13B_RAT Protein unc-13 homolog B OS=Rattus norvegicus GN=Unc13b PE=1 SV=2

 Score = 56.2 bits (134), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 24/144 (16%)

Query: 473 QQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPN 531
           Q  L G+S + +    KI +TVV  + L  KDK+G  DPYV +Q GK  +RT+T   + N
Sbjct: 602 QSVLDGTSKWSA----KITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLN 657

Query: 532 HVWNQKFELDEIGGGECLMVKCYNEEIF------------GDENMGSARVNLEGLVEGSV 579
            VW +KF  +     + + V+ ++E+               D+ +G   + +  L     
Sbjct: 658 PVWEEKFHFECHNSSDRIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTL--SGE 715

Query: 580 RDIWVPLEKVN-----TGELRLQI 598
            D+W  LEK       +G +RLQI
Sbjct: 716 MDVWYNLEKRTDKSAVSGAIRLQI 739

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP), Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	680
255582757	829	synaptotagmin, putative [Ricinus communi	0.954	0.782	0.721	0.0
449439403	817	PREDICTED: extended synaptotagmin-1-like	0.945	0.787	0.729	0.0
224135377	825	plant synaptotagmin [Populus trichocarpa	0.964	0.795	0.723	0.0
359491448	822	PREDICTED: uncharacterized protein LOC10	0.957	0.791	0.733	0.0
224118810	819	plant synaptotagmin [Populus trichocarpa	0.961	0.798	0.721	0.0
297734213	815	unnamed protein product [Vitis vinifera]	0.947	0.790	0.728	0.0
449441149	838	PREDICTED: synaptotagmin-4-like [Cucumis	0.970	0.787	0.695	0.0
357500377	828	Plant synaptotagmin [Medicago truncatula	0.960	0.788	0.686	0.0
147815879	783	hypothetical protein VITISV_035295 [Viti	0.894	0.776	0.692	0.0
356522767	826	PREDICTED: uncharacterized protein LOC10	0.955	0.786	0.685	0.0

>gi|255582757|ref|XP_002532155.1| synaptotagmin, putative [Ricinus communis] gi|223528165|gb|EEF30229.1| synaptotagmin, putative [Ricinus communis]

 Score = 1014 bits (2623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/650 (72%), Positives = 560/650 (86%), Gaps = 1/650 (0%)

Query: 14  ALNVEQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQY 73
           +  VE+ VEF  +L  EKP+LPF+IPL  + W  ERW+FS SNWVPL +AVWATVQY  +
Sbjct: 14  SFTVEEAVEFLNHLYAEKPVLPFLIPLFFIFWCVERWVFSLSNWVPLVLAVWATVQYYIH 73

Query: 74  QHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRL 133
           Q +I VE+LN+KW +++L TSPITP+EHCEWLNKLL+EVW  YI+PKLS RFS +VEKRL
Sbjct: 74  QRQILVEDLNRKWKRVVLSTSPITPVEHCEWLNKLLLEVWLNYIHPKLSTRFSSMVEKRL 133

Query: 134 KHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKL 193
           K RK +LIE++ELQEFSLGS  PC GL GT WS+SGDQR M++GFDWD +DISI+LLAKL
Sbjct: 134 KQRKSKLIERVELQEFSLGSFPPCFGLQGTHWSTSGDQRFMRIGFDWDTSDISIMLLAKL 193

Query: 194 AKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATE 253
           AKP +GTA+IVINSLHIKGDLL+MP+++G+A+LYSF+S P+VRIGVAFGSGGSQSLPATE
Sbjct: 194 AKP-MGTARIVINSLHIKGDLLLMPVVDGRAILYSFISAPEVRIGVAFGSGGSQSLPATE 252

Query: 254 LPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLR 313
           LPGVS+WL +++ +TLVKT+VEPRRRCYSLPAVDLRKKAVGG+++V VISA KL  S  R
Sbjct: 253 LPGVSSWLVKILTDTLVKTMVEPRRRCYSLPAVDLRKKAVGGVIHVTVISARKLCTSPFR 312

Query: 314 GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHE 373
           GSPSR+QQN S + S EEH++DKDL TFVE+ELE+LTRRT+ RPGS PRWDS FNMVLHE
Sbjct: 313 GSPSRKQQNCSVNCSSEEHFDDKDLQTFVEVELEQLTRRTNVRPGSSPRWDSTFNMVLHE 372

Query: 374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEV 433
           ETG +RF+LY C P +VK+DYL SCE+K+KYVADDST FWA+G +SG+IA+ AE CG EV
Sbjct: 373 ETGILRFHLYNCTPNNVKFDYLASCEIKLKYVADDSTMFWAVGHNSGVIAELAEICGKEV 432

Query: 434 EMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVT 493
           EM VPFEGVNSGEL V+LVLKEWQFSDGSHS N F   S++S++G SN +SRTGRKINV 
Sbjct: 433 EMAVPFEGVNSGELIVKLVLKEWQFSDGSHSFNKFPVSSRKSMTGLSNLVSRTGRKINVV 492

Query: 494 VVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKC 553
           VVEGKDL  K+KSGKCDPYVKLQYGK +QRTRTA + N +WNQKFE DEI GGECLM+KC
Sbjct: 493 VVEGKDLSAKEKSGKCDPYVKLQYGKAIQRTRTATASNAIWNQKFEFDEIEGGECLMIKC 552

Query: 554 YNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQN 613
           Y+EE+FGD+ MGSARV+LEGLVEGS+RD+WVPLEKV++GELRLQIEA RVDD EGS+G  
Sbjct: 553 YSEEMFGDDGMGSARVSLEGLVEGSIRDVWVPLEKVSSGELRLQIEAVRVDDYEGSKGSI 612

Query: 614 IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLS 663
            GS NGWIELV++EA+DL+AADLRGTSDPYV+VQYG+LKKRTK+    L+
Sbjct: 613 AGSKNGWIELVLIEAKDLIAADLRGTSDPYVRVQYGNLKKRTKVMYKTLN 662

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439403|ref|XP_004137475.1| PREDICTED: extended synaptotagmin-1-like [Cucumis sativus] gi|449486832|ref|XP_004157416.1| PREDICTED: extended synaptotagmin-1-like [Cucumis sativus]

 Score = 1003 bits (2594), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/644 (72%), Positives = 552/644 (85%), Gaps = 1/644 (0%)

Query: 21  VEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQYQHRIHVE 80
           +EF+ +L+ EKPLLPF+IPLVL+ W  ERW+FS SNWVPLA+AVWAT+QYG YQ ++ V+
Sbjct: 1   MEFFHHLMAEKPLLPFLIPLVLIAWSIERWVFSLSNWVPLAVAVWATLQYGSYQRQLIVD 60

Query: 81  ELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRL 140
           ELN KW +II  TSP TPLE C WLNKLLMEVWP Y NPKLS +F+  V KRLK RK RL
Sbjct: 61  ELNTKWRRIITNTSPETPLEPCAWLNKLLMEVWPNYFNPKLSTKFTSTVNKRLKDRKSRL 120

Query: 141 IEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGT 200
           IEKIEL +FSLGS  P LGL GTRWS+ GD+R+M L FDWD N++SILL AKL KP +GT
Sbjct: 121 IEKIELLDFSLGSCPPSLGLSGTRWSTCGDERIMHLSFDWDTNEMSILLQAKLGKPFMGT 180

Query: 201 AKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNW 260
           A+IVINSLHIKGDL++MPIL+G+AVL+SFV+ PDVRIGVAFGSGGSQSLPATELPGVS+W
Sbjct: 181 ARIVINSLHIKGDLVLMPILDGRAVLFSFVTTPDVRIGVAFGSGGSQSLPATELPGVSSW 240

Query: 261 LARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQ 320
           L ++  +TLV+T+VEPRRRC+SLPAVDLRKKAVGGIVYV VISA KL RSSL+GSP+RRQ
Sbjct: 241 LVKIFTDTLVRTMVEPRRRCFSLPAVDLRKKAVGGIVYVTVISARKLYRSSLKGSPTRRQ 300

Query: 321 QNYSADS-SLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVR 379
           Q+YSA++ S  EH  DKD+ TFVE+ELE+L+R+TDAR GSDP+W++ FNM+LHE+TGT+R
Sbjct: 301 QSYSANNGSFGEHLTDKDMQTFVEVELEKLSRKTDARSGSDPQWNTTFNMILHEDTGTLR 360

Query: 380 FNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPF 439
           F+LYE  P HVK+DYL SCEVKMKY ADDSTTFWAIGPDS ++AK+A+FCG EVEM +PF
Sbjct: 361 FHLYEYNPSHVKHDYLASCEVKMKYAADDSTTFWAIGPDSSVVAKYADFCGKEVEMDIPF 420

Query: 440 EGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKD 499
           EG + GEL VRLVLKEW FSDGSHS N +H  SQQSL G+S+F+S TGRKIN+TVVEGKD
Sbjct: 421 EGAHCGELRVRLVLKEWMFSDGSHSSNRYHVSSQQSLYGASSFLSSTGRKINITVVEGKD 480

Query: 500 LMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIF 559
           L  KDK+GKCDPYVKLQYGK +QRTRTAHS N  WNQKFE DEI GGE L +KC  E+IF
Sbjct: 481 LPTKDKNGKCDPYVKLQYGKALQRTRTAHSFNPTWNQKFEFDEIAGGEYLKLKCLTEDIF 540

Query: 560 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNG 619
           G++N GSARVNLEGLVEGSVRD+W+PLEKVN+GELRLQIEA RVDDNEGS+G ++   NG
Sbjct: 541 GNDNTGSARVNLEGLVEGSVRDVWIPLEKVNSGELRLQIEAIRVDDNEGSKGSSLAPTNG 600

Query: 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLS 663
           WIELV++EARDLVAAD+RGTSDPYV+VQYG LKKRTK+    LS
Sbjct: 601 WIELVLIEARDLVAADIRGTSDPYVRVQYGKLKKRTKIMYKTLS 644

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135377|ref|XP_002322058.1| plant synaptotagmin [Populus trichocarpa] gi|222869054|gb|EEF06185.1| plant synaptotagmin [Populus trichocarpa]

 Score =  995 bits (2573), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/658 (72%), Positives = 569/658 (86%), Gaps = 2/658 (0%)

Query: 6   RKKGARSFALNVEQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVW 65
           R+KG   F   V++++EF+ +LLEEKP + F+IPL+L+ W  E+W+FSFSNWVPL +A+W
Sbjct: 3   RRKGRAGF--KVKELLEFFNHLLEEKPSIAFLIPLLLVCWGIEKWVFSFSNWVPLVVAIW 60

Query: 66  ATVQYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRF 125
           AT QY  +Q R+ VE+LNKKW +++L TSPITPLEHCEW+NKLLME+W  Y+NPKL+ RF
Sbjct: 61  ATFQYCSHQQRLLVEDLNKKWKRVVLNTSPITPLEHCEWMNKLLMEIWTSYMNPKLATRF 120

Query: 126 SQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDI 185
           S IVEKRLK R+ +LIEKIELQEFSLGS  P LG HGT WS+SGDQR+M LGFDWD +D+
Sbjct: 121 SSIVEKRLKQRRSKLIEKIELQEFSLGSCPPYLGPHGTCWSTSGDQRIMNLGFDWDTSDM 180

Query: 186 SILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGG 245
           SILLLAKLAKPL+GTA+IVINSLHIKG+LL+MP+L+G+AVLYSFVS P+VRIGVAFGSGG
Sbjct: 181 SILLLAKLAKPLMGTARIVINSLHIKGELLLMPVLDGRAVLYSFVSTPEVRIGVAFGSGG 240

Query: 246 SQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISAS 305
           SQSLPATELPGVS+WL +++ +TLVKT+VEP RRCY LPAVDLRKKAVGGIVYV VISA 
Sbjct: 241 SQSLPATELPGVSSWLVKVLTDTLVKTMVEPHRRCYCLPAVDLRKKAVGGIVYVSVISAR 300

Query: 306 KLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDS 365
           KLSRS+LRGSP RR+Q++S + SL EH++D+DL TFVE+EL +LTRRT+ R GS PRWDS
Sbjct: 301 KLSRSNLRGSPPRREQSHSLNGSLVEHFDDEDLRTFVEVELGQLTRRTEVRLGSSPRWDS 360

Query: 366 MFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKH 425
            FNMVLHE+TGT+R +LY C P  VKYDYL SCE+KMKY ADDST FWAIGPDSG+IAK 
Sbjct: 361 TFNMVLHEDTGTLRLHLYNCPPNSVKYDYLASCEIKMKYAADDSTAFWAIGPDSGVIAKR 420

Query: 426 AEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISR 485
           AEFCG+EVEM VPFEGV SGELTV+LV+KEWQFSDGS SLN F+  S +S+ GSSN +SR
Sbjct: 421 AEFCGNEVEMVVPFEGVTSGELTVKLVVKEWQFSDGSLSLNKFNVSSLKSMYGSSNLLSR 480

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGG 545
           TGRKINV ++EGKDL+ K++SGKCDPYVKLQYGK++Q+TRTAH+ N  WNQKFE DEI  
Sbjct: 481 TGRKINVAIMEGKDLISKERSGKCDPYVKLQYGKVLQKTRTAHNSNPFWNQKFEFDEIVD 540

Query: 546 GECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDD 605
             CL +KCY+EEIFGDEN+GSARVNLEGL+EGS+RDIWVPLE+VN+GELRLQIEA RV+D
Sbjct: 541 DGCLKIKCYSEEIFGDENIGSARVNLEGLLEGSIRDIWVPLERVNSGELRLQIEAVRVND 600

Query: 606 NEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLS 663
           +EGSRG   GS NGWIEL++VEA+DL+AADLRGTSDPYV+VQYG LKKRTK+    L+
Sbjct: 601 SEGSRGSVSGSFNGWIELILVEAKDLIAADLRGTSDPYVRVQYGSLKKRTKVMYKTLN 658

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491448|ref|XP_002276429.2| PREDICTED: uncharacterized protein LOC100262742 [Vitis vinifera]

 Score =  994 bits (2571), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/656 (73%), Positives = 558/656 (85%), Gaps = 5/656 (0%)

Query: 9   GARSFALNVEQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATV 68
           G R    NV + +EF   LL + PLLPF+IP+VL++W  ERW+FS SNWVPL +AVWAT+
Sbjct: 3   GRRRRVFNVSEAIEFLNQLLVDNPLLPFLIPVVLVVWAVERWIFSLSNWVPLVVAVWATI 62

Query: 69  QYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQI 128
           QYG Y+ RI VE+LNKKW Q+I+  SPITP+EHCEWLNKLLME+WP Y+NPKLS+RFS I
Sbjct: 63  QYGSYKRRILVEDLNKKWKQVIVNKSPITPIEHCEWLNKLLMEIWPNYLNPKLSLRFSSI 122

Query: 129 VEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISIL 188
           VEKRLKHRK  LIEKIELQ FSLGS+ P LGLHGT+WS++GDQ++M+LGFDWD  D+SI+
Sbjct: 123 VEKRLKHRKSGLIEKIELQGFSLGSSPPVLGLHGTQWSATGDQKIMRLGFDWDTTDLSIM 182

Query: 189 LLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQS 248
           LLAKLAKPLLGTA+IVINSLHIKGDLL+MPIL+G+A LYSF+S P+VRIGVAFGSGGSQS
Sbjct: 183 LLAKLAKPLLGTARIVINSLHIKGDLLLMPILDGRAFLYSFISPPEVRIGVAFGSGGSQS 242

Query: 249 LPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLS 308
           LPATELPGVS+WL +L  +TLV+T+VEPRRRCYSLPAVDLRKKAVGG++YV VISASKLS
Sbjct: 243 LPATELPGVSSWLVKLFTDTLVRTMVEPRRRCYSLPAVDLRKKAVGGVIYVTVISASKLS 302

Query: 309 RSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFN 368
           RSSL+GSP RRQQ+ S D   EEH +DK L TFVE+EL ELTRRTD R GS PRWDS+FN
Sbjct: 303 RSSLKGSPLRRQQSCSIDGISEEHLDDKYLQTFVEVELGELTRRTDVRVGSSPRWDSLFN 362

Query: 369 MVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEF 428
           M+LHE+TGT+RF LYE  P +VKYDYL SCE+KMKYVADDST FWAIG +S +IAKHAEF
Sbjct: 363 MILHEDTGTLRFQLYESTPSNVKYDYLASCEIKMKYVADDSTAFWAIGSESSVIAKHAEF 422

Query: 429 CGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGR 488
           CG EVEM VPFEG NSGEL VRLV+KEWQF+DGSHS NNF    QQSL GSSNF S TGR
Sbjct: 423 CGKEVEMVVPFEGANSGELMVRLVVKEWQFTDGSHSSNNFRVSPQQSLYGSSNFASGTGR 482

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGE 547
           KIN+TVVEGKDL+  +KSG+CDPYVKLQYGK+ QRTRT  H  +  WNQKFE DEIGGGE
Sbjct: 483 KINITVVEGKDLI-ANKSGRCDPYVKLQYGKVPQRTRTVPHCSSPTWNQKFEFDEIGGGE 541

Query: 548 CLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNE 607
            L +KC+NEE FGD+N+G+ARV+LEGLVEGS+RD+WVPLEKVNTGELRL +E   +DD E
Sbjct: 542 YLKIKCFNEETFGDDNIGNARVSLEGLVEGSIRDVWVPLEKVNTGELRLLLEVVSLDDYE 601

Query: 608 GSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLS 663
            +   N GSGNGW+ELV+VEARDL+AADLRGTSDPYV+VQYG LKKRTK+    L+
Sbjct: 602 VA---NAGSGNGWVELVLVEARDLIAADLRGTSDPYVRVQYGSLKKRTKVMFKTLN 654

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118810|ref|XP_002317912.1| plant synaptotagmin [Populus trichocarpa] gi|222858585|gb|EEE96132.1| plant synaptotagmin [Populus trichocarpa]

 Score =  987 bits (2552), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/665 (72%), Positives = 565/665 (84%), Gaps = 11/665 (1%)

Query: 1   MARSRRKKGARSFALNVEQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPL 60
           M R+R+ K        VE V+E + +LLEEKP   F+IPL+L+ W  E+W+FSFSNWVPL
Sbjct: 1   MGRTRKGKAG----FKVEDVLEVFNHLLEEKPSFAFLIPLILVCWGIEKWVFSFSNWVPL 56

Query: 61  AIAVWATVQYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPK 120
            +A+WAT QY  +Q ++ VE+LNKKW +++L TSPITPLEHCEWLNKLLME+W  Y+NPK
Sbjct: 57  VVAIWATFQYCSHQQKVIVEDLNKKWKRVVLNTSPITPLEHCEWLNKLLMEIWMNYMNPK 116

Query: 121 LSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDW 180
           L+IRFS IVEKRLK ++ +L+EK+ELQEFSLGS  P LGLHGTRWS+SGDQR+M LGFDW
Sbjct: 117 LAIRFSSIVEKRLKQQRLKLMEKLELQEFSLGSCPPSLGLHGTRWSTSGDQRIMHLGFDW 176

Query: 181 DANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVA 240
           D+ D+SILLLAKLAKPL+GTA+IVINSLHIKG+LL+MP+L+G+AVLYSFVSIP+VRIGVA
Sbjct: 177 DSKDMSILLLAKLAKPLMGTARIVINSLHIKGELLLMPVLDGRAVLYSFVSIPEVRIGVA 236

Query: 241 FGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVR 300
           FGSGGSQSLPATELPGVS+WL ++  +TLVKT++EPRRRC+SLPAVDLRKKAVGGIVYV 
Sbjct: 237 FGSGGSQSLPATELPGVSSWLVKVFTDTLVKTMIEPRRRCFSLPAVDLRKKAVGGIVYVS 296

Query: 301 VISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSD 360
           VISASKLSRS+LRGSP RR      + S  EH++DK L TFVE+EL  LTRRTD RPGS+
Sbjct: 297 VISASKLSRSNLRGSPPRR-----VNGSFIEHFDDKYLQTFVEVELGHLTRRTDVRPGSN 351

Query: 361 PRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSG 420
           PRWDS FNM LHEETGT+R +LY   P  VKYDYL SCE+KMKYVADDSTTFWAIGPDSG
Sbjct: 352 PRWDSTFNMFLHEETGTLRLHLYNRPPNSVKYDYLASCEIKMKYVADDSTTFWAIGPDSG 411

Query: 421 IIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSS 480
           +IAKHAE CG EVEM VPFEGV SGELTV+LV+KEW FSDGSHSLNN    SQ+S+ GSS
Sbjct: 412 VIAKHAEICGKEVEMVVPFEGVTSGELTVKLVVKEWLFSDGSHSLNNV--SSQKSIYGSS 469

Query: 481 NFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFEL 540
           N +SRTGRKINV V+EGK L+ K++SGKCDPYVKLQYGK++Q+TRTAHS N +WNQKFE 
Sbjct: 470 NILSRTGRKINVAVMEGKGLISKERSGKCDPYVKLQYGKVLQKTRTAHSSNPLWNQKFEF 529

Query: 541 DEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA 600
           DEI    CL +KCY+EEIFGDE++GSARVNLEGL+EG +RD+WVPLEKVNTGELRLQIEA
Sbjct: 530 DEIVDDRCLKIKCYSEEIFGDESIGSARVNLEGLMEGFIRDMWVPLEKVNTGELRLQIEA 589

Query: 601 TRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVA 660
            +V+D+EGSRG   GS NG IELV+VEA+DL+AADLRGTSDPYV+VQYG LKKRTK+   
Sbjct: 590 VQVNDSEGSRGSMSGSFNGLIELVLVEAKDLIAADLRGTSDPYVRVQYGSLKKRTKVMYK 649

Query: 661 CLSGH 665
            L+ H
Sbjct: 650 TLNPH 654

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734213|emb|CBI15460.3| unnamed protein product [Vitis vinifera]

 Score =  986 bits (2550), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/656 (72%), Positives = 553/656 (84%), Gaps = 12/656 (1%)

Query: 9   GARSFALNVEQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATV 68
           G R    NV + +EF   LL + PLLPF+IP+VL++W  ERW+FS SNWVPL +AVWAT+
Sbjct: 3   GRRRRVFNVSEAIEFLNQLLVDNPLLPFLIPVVLVVWAVERWIFSLSNWVPLVVAVWATI 62

Query: 69  QYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQI 128
           QYG Y+ RI VE+LNKKW Q+I+  SPITP+EHCEWLNKLLME+WP Y+NPKLS+RFS I
Sbjct: 63  QYGSYKRRILVEDLNKKWKQVIVNKSPITPIEHCEWLNKLLMEIWPNYLNPKLSLRFSSI 122

Query: 129 VEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISIL 188
           VEKRLKHRK  LIEKIELQ FSLGS+ P LGLHGT+WS++GDQ++M+LGFDWD  D+SI+
Sbjct: 123 VEKRLKHRKSGLIEKIELQGFSLGSSPPVLGLHGTQWSATGDQKIMRLGFDWDTTDLSIM 182

Query: 189 LLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQS 248
           LLAKLAKPLLGTA+IVINSLHIKGDLL+MPIL+G+A LYSF+S P+VRIGVAFGSGGSQS
Sbjct: 183 LLAKLAKPLLGTARIVINSLHIKGDLLLMPILDGRAFLYSFISPPEVRIGVAFGSGGSQS 242

Query: 249 LPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLS 308
           LPATELPGVS+WL +L  +TLV+T+VEPRRRCYSLPAVDLRKKAVGG++YV VISASKLS
Sbjct: 243 LPATELPGVSSWLVKLFTDTLVRTMVEPRRRCYSLPAVDLRKKAVGGVIYVTVISASKLS 302

Query: 309 RSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFN 368
           RSSL+GSP RRQQ+ S D   EEH +DK L TFVE+EL ELTRRTD R GS PRWDS+FN
Sbjct: 303 RSSLKGSPLRRQQSCSIDGISEEHLDDKYLQTFVEVELGELTRRTDVRVGSSPRWDSLFN 362

Query: 369 MVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEF 428
           M+LHE+TGT+RF LYE  P +VKYDYL SCE+KMKYVADDST FWAIG +S +IAKHAEF
Sbjct: 363 MILHEDTGTLRFQLYESTPSNVKYDYLASCEIKMKYVADDSTAFWAIGSESSVIAKHAEF 422

Query: 429 CGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGR 488
           CG EVEM VPFEG NSGEL VRLV+KEWQF+DGSHS NNF    QQSL GSSNF S TGR
Sbjct: 423 CGKEVEMVVPFEGANSGELMVRLVVKEWQFTDGSHSSNNFRVSPQQSLYGSSNFASGTGR 482

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGE 547
           KIN+TVVEGKDL+  +KSG+CDPYVKLQYGK+ QRTRT  H  +  WNQKFE DEIGGGE
Sbjct: 483 KINITVVEGKDLI-ANKSGRCDPYVKLQYGKVPQRTRTVPHCSSPTWNQKFEFDEIGGGE 541

Query: 548 CLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNE 607
            L +KC+NEE FGD+N+G+ARV+LEGLVEGS+RD+WVPLEKVNTGELRL +E        
Sbjct: 542 YLKIKCFNEETFGDDNIGNARVSLEGLVEGSIRDVWVPLEKVNTGELRLLLEVV------ 595

Query: 608 GSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLS 663
                N GSGNGW+ELV+VEARDL+AADLRGTSDPYV+VQYG LKKRTK+    L+
Sbjct: 596 ----ANAGSGNGWVELVLVEARDLIAADLRGTSDPYVRVQYGSLKKRTKVMFKTLN 647

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441149|ref|XP_004138346.1| PREDICTED: synaptotagmin-4-like [Cucumis sativus] gi|449477454|ref|XP_004155027.1| PREDICTED: synaptotagmin-4-like [Cucumis sativus]

 Score =  970 bits (2507), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/661 (69%), Positives = 554/661 (83%), Gaps = 1/661 (0%)

Query: 6   RKKGARSFALNVEQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVW 65
           R K  + F +NVE  V   ++   EKP LP+++PL  L W F++W+FSFSNW+PLAIAVW
Sbjct: 7   RIKEMKRFGINVEGTVVVLRHAALEKPFLPYLVPLFFLAWAFDKWVFSFSNWIPLAIAVW 66

Query: 66  ATVQYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRF 125
           AT+QYG++Q ++ VEELNKKW QI+L TSP TPLEHCEWLNKLL E+WP YINPKLS++F
Sbjct: 67  ATLQYGRFQRQLLVEELNKKWKQIVLDTSPSTPLEHCEWLNKLLTEIWPNYINPKLSLKF 126

Query: 126 SQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDI 185
           S IVEKRLKHR+P+LIE+IEL EFSLGS  P LGL GT+WS+SG+QR+M+LGFDWD N++
Sbjct: 127 STIVEKRLKHRRPKLIERIELLEFSLGSCPPGLGLRGTQWSTSGNQRIMRLGFDWDTNEM 186

Query: 186 SILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGG 245
           SI+LLAKLA P  GTA+IVINS+HI GDLL+ PIL+G+A+LYSFV  P+VRIGVAFGSGG
Sbjct: 187 SIMLLAKLAMPFTGTARIVINSIHIMGDLLLRPILDGRAILYSFVFTPEVRIGVAFGSGG 246

Query: 246 SQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISAS 305
           SQSLPATELPGVS+WL +L+ + +V+T+VEPRRRC+SLPAVDL KKAV G +YV VISAS
Sbjct: 247 SQSLPATELPGVSSWLVKLLTDFIVRTMVEPRRRCFSLPAVDLGKKAVSGTIYVTVISAS 306

Query: 306 KLSRSSLRGSPSRRQQNYSADSSLEEHYEDKD-LTTFVEIELEELTRRTDARPGSDPRWD 364
           KLSR+SLRG+ SR+  +   +S L+E+  DKD L TFVE+EL+EL+RRT  R GS+P W+
Sbjct: 307 KLSRNSLRGNSSRKPLSTYMNSPLDENLIDKDDLQTFVEVELDELSRRTAVRLGSNPVWN 366

Query: 365 SMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAK 424
           S FNM+LHE+TGT+RFNLYE  P +VKYDYL SCEVKMKY ADDST+FWAIG DS +IAK
Sbjct: 367 STFNMILHEDTGTLRFNLYESNPSNVKYDYLASCEVKMKYAADDSTSFWAIGSDSEVIAK 426

Query: 425 HAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFIS 484
           H+EFCG EVEM VPFEGV+ GELTV+L++KEWQFSDGSHS +NF    QQS++GSSNF S
Sbjct: 427 HSEFCGKEVEMVVPFEGVDCGELTVKLIVKEWQFSDGSHSSHNFQVRPQQSVNGSSNFAS 486

Query: 485 RTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIG 544
           RTGRK+ +T+VEGKDL  KDKSGKC+ YVKL+YGK + +TRT  S N  WNQKFELDEIG
Sbjct: 487 RTGRKMAITLVEGKDLSLKDKSGKCESYVKLEYGKALLKTRTGISVNPNWNQKFELDEIG 546

Query: 545 GGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVD 604
           GGE L VKC+  +IFGDEN+G+ARVNLEGL EG VRD+WVPLEKVN+GELRL IEA + D
Sbjct: 547 GGEYLKVKCFGVDIFGDENIGTARVNLEGLHEGVVRDVWVPLEKVNSGELRLMIEAVKAD 606

Query: 605 DNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLSG 664
           D EGSRG NIGS NGWIELVI+EA+DLVAAD+ GTSDPYV+VQYG+LKKRTK+    L+ 
Sbjct: 607 DYEGSRGSNIGSNNGWIELVIIEAKDLVAADIGGTSDPYVRVQYGNLKKRTKVMFKTLNP 666

Query: 665 H 665
           H
Sbjct: 667 H 667

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500377|ref|XP_003620477.1| Plant synaptotagmin [Medicago truncatula] gi|355495492|gb|AES76695.1| Plant synaptotagmin [Medicago truncatula]

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/663 (68%), Positives = 557/663 (84%), Gaps = 10/663 (1%)

Query: 4   SRRKKGARSFALN-VEQV-VEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLA 61
           SR+K   R F+++ +E+V V+F+  +L+EKP +PF IP++L+    E+W+FSFS WVPLA
Sbjct: 2   SRKK---RVFSIDSIEEVAVDFFNYVLQEKPKIPFFIPVILIACAVEKWVFSFSTWVPLA 58

Query: 62  IAVWATVQYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKL 121
           +AVWAT+QYG+YQ ++ VE+L+KKW +IIL  SPITPLEHCEWLNKLL E+WP Y NPKL
Sbjct: 59  LAVWATIQYGRYQRKLLVEDLDKKWKRIILNNSPITPLEHCEWLNKLLTEIWPNYFNPKL 118

Query: 122 SIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWD 181
           S R S IVE RLK RKPR +E++ELQEFSLGS  P L L G RWS+ GDQRVMQLGFDWD
Sbjct: 119 SSRLSAIVEARLKLRKPRFLERVELQEFSLGSCPPSLALQGMRWSTIGDQRVMQLGFDWD 178

Query: 182 ANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAF 241
            +++SILLLAKLAKPL+GTA+IVINSLHIKGDL+  PIL+GKA+LYSFVS P+VR+GVAF
Sbjct: 179 THEMSILLLAKLAKPLMGTARIVINSLHIKGDLIFTPILDGKALLYSFVSAPEVRVGVAF 238

Query: 242 GSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRV 301
           GSGGSQSLPATE PGVS+WL +L  +TLVKT+VEPRRRC++LPAVDLRKKAVGGI+YVRV
Sbjct: 239 GSGGSQSLPATEWPGVSSWLEKLFTDTLVKTMVEPRRRCFTLPAVDLRKKAVGGIIYVRV 298

Query: 302 ISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDP 361
           ISA+KLS SS +   SRRQQ+ S + S E+  +DKDL TFVE+E+EELTRRTD R GS P
Sbjct: 299 ISANKLSSSSFKA--SRRQQSGSTNGSSEDVSDDKDLHTFVEVEIEELTRRTDVRLGSTP 356

Query: 362 RWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGI 421
           RWD+ FNMVLH+ TGT+RFNLYECIP +VK DYL SCE+K+++V DDST  WA+GPDSGI
Sbjct: 357 RWDAPFNMVLHDNTGTLRFNLYECIPNNVKCDYLGSCEIKLRHVEDDSTIMWAVGPDSGI 416

Query: 422 IAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSN 481
           IAK A+FCGDE+EM VPFEG NSGEL V +V+KEWQFSDG+HSLNN  + SQQSL+GSSN
Sbjct: 417 IAKQAQFCGDEIEMVVPFEGTNSGELKVSIVVKEWQFSDGTHSLNNLRNNSQQSLNGSSN 476

Query: 482 FISRTGRKINVTVVEGKDL-MPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFEL 540
              RTG+K+ +TVVEGKDL   K+K+GK DPY+KLQYGK++Q+T+T+H+PN VWNQ  E 
Sbjct: 477 IQLRTGKKLKITVVEGKDLAAAKEKTGKFDPYIKLQYGKVMQKTKTSHTPNPVWNQTIEF 536

Query: 541 DEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA 600
           DE+GGGE L +K + EE+FGDEN+GSA+VNLEGLV+GSVRD+W+PLE+V +GE+RL+IEA
Sbjct: 537 DEVGGGEYLKLKVFTEELFGDENIGSAQVNLEGLVDGSVRDVWIPLERVRSGEIRLKIEA 596

Query: 601 TRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVA 660
            +VDD EGS G    SGNGWIELV++E RDLVAADLRGTSDPYV+V YG+ KKRTK+   
Sbjct: 597 IKVDDQEGSTGSG--SGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGNFKKRTKVIYK 654

Query: 661 CLS 663
            L+
Sbjct: 655 TLT 657

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815879|emb|CAN72583.1| hypothetical protein VITISV_035295 [Vitis vinifera]

 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/656 (69%), Positives = 525/656 (80%), Gaps = 48/656 (7%)

Query: 9   GARSFALNVEQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATV 68
           G R    NV + +EF   LL + PLLPF+IP+VL++W  ERW+FS SNWVPL +AVWAT+
Sbjct: 3   GRRRRVFNVSEAIEFLNQLLVDNPLLPFLIPVVLVVWAVERWIFSLSNWVPLVVAVWATI 62

Query: 69  QYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQI 128
           Q                         PITP+EHCEWLNKLLME+WP Y+NPKLS+RFS I
Sbjct: 63  Q-------------------------PITPIEHCEWLNKLLMEIWPNYLNPKLSLRFSSI 97

Query: 129 VEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISIL 188
           VE           EKIELQ FSLGS+ P LGLHGT+WS++GDQ++M+LGFDWD  D+SI+
Sbjct: 98  VE-----------EKIELQGFSLGSSPPVLGLHGTQWSATGDQKIMRLGFDWDTTDLSIM 146

Query: 189 LLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQS 248
           LLAKLAKPLLGTA+IVINSLHIKGDLL+MPIL+G+A LYSF+S P+VRIGVAFGSGGSQS
Sbjct: 147 LLAKLAKPLLGTARIVINSLHIKGDLLLMPILDGRAFLYSFISPPEVRIGVAFGSGGSQS 206

Query: 249 LPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLS 308
           LPATELPGVS+WL +L  +TLV+T+VEPRRRCYSLPAVDLRKKAVGG++YV VISASKLS
Sbjct: 207 LPATELPGVSSWLVKLFTDTLVRTMVEPRRRCYSLPAVDLRKKAVGGVIYVTVISASKLS 266

Query: 309 RSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFN 368
           RSSL+GSP RRQQ+ S D   EEH +DK L TFVE+EL ELTRRTD R GS PRWDS+FN
Sbjct: 267 RSSLKGSPLRRQQSCSIDGISEEHLDDKYLQTFVEVELGELTRRTDVRVGSSPRWDSLFN 326

Query: 369 MVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEF 428
           M+LHE+TGT+RF LYE  P +VKYDYL SCE+KMKYVADDST FWAIG +S +IAKHAEF
Sbjct: 327 MILHEDTGTLRFQLYESTPSNVKYDYLASCEIKMKYVADDSTAFWAIGSESSVIAKHAEF 386

Query: 429 CGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGR 488
           CG EVEM VPFEG NSGEL VRLV+KEWQF+DGSHS NNF    QQSL GSSNF S TGR
Sbjct: 387 CGKEVEMVVPFEGANSGELMVRLVVKEWQFTDGSHSSNNFRVSPQQSLYGSSNFASGTGR 446

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGE 547
           KIN+TVVEGKDL+  +KSG+CDPYVKLQYGK+ QRTRT  H  +  WNQKFE DEIGGGE
Sbjct: 447 KINITVVEGKDLI-ANKSGRCDPYVKLQYGKVPQRTRTVPHCSSPTWNQKFEFDEIGGGE 505

Query: 548 CLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNE 607
            L +KC+NEE FGD+N+G+ARV+LEGLVEGS+RD+WVPLEKVNTGELRL +E        
Sbjct: 506 YLKIKCFNEETFGDDNIGNARVSLEGLVEGSIRDVWVPLEKVNTGELRLLLEVV------ 559

Query: 608 GSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLS 663
                N GSGNGW+ELV+VEARDL+AADLRGTSDPYV+VQYG LKKRTK+    L+
Sbjct: 560 ----ANAGSGNGWVELVLVEARDLIAADLRGTSDPYVRVQYGSLKKRTKVMFKTLN 611

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522767|ref|XP_003530017.1| PREDICTED: uncharacterized protein LOC100789237 [Glycine max]

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/655 (68%), Positives = 542/655 (82%), Gaps = 5/655 (0%)

Query: 11  RSFALNVEQV-VEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQ 69
           R+ ++N+E+  V+F+ +LL+EKP +P  IPL+L+ W  ERW+FS S WVPLA+AVW T+Q
Sbjct: 6   RALSINIEEAAVDFFNHLLQEKPRIPVFIPLILIAWAIERWVFSASTWVPLALAVWTTIQ 65

Query: 70  YGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQIV 129
           YG+YQ ++ VE+L+KKW +IIL  SPITPLEHCEWLNKLL EVW  Y NPK SIR S IV
Sbjct: 66  YGRYQRKLLVEDLDKKWKRIILNVSPITPLEHCEWLNKLLTEVWSNYFNPKFSIRISAIV 125

Query: 130 EKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILL 189
           EKRLK RKPRL+E++ELQEFSLGS  P L L G RWS+ GDQR +QLGFDWD N++SILL
Sbjct: 126 EKRLKLRKPRLLERVELQEFSLGSCPPSLALQGMRWSTIGDQRFLQLGFDWDTNEMSILL 185

Query: 190 LAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSL 249
           LAKLAKPL+GTA+IVINSLHIKGDLL  PIL+GKA+LYSFVS P+VRIGVAFGSGGSQSL
Sbjct: 186 LAKLAKPLIGTARIVINSLHIKGDLLASPILDGKALLYSFVSTPEVRIGVAFGSGGSQSL 245

Query: 250 PATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSR 309
           PATE PGVS+WL +L  +TL KT+VEPRRRC++LPAVDLRKKAVGGI+Y+RVISA+KLSR
Sbjct: 246 PATEWPGVSSWLEKLFTDTLAKTMVEPRRRCFTLPAVDLRKKAVGGIIYIRVISANKLSR 305

Query: 310 SSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNM 369
           S  +   SRRQ N +++   E++++DKDL TFVE+E+EELTRRTD R GS PRWD+ FNM
Sbjct: 306 SCFK--TSRRQPNGTSNGCSEDNFDDKDLQTFVEVEIEELTRRTDVRLGSTPRWDAPFNM 363

Query: 370 VLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFC 429
           VLH+  GT+RFNL+E  P +V+ DYL SCE+K+++V DDST  WAIGPDSG+IAK A+FC
Sbjct: 364 VLHDNAGTLRFNLHESSPNNVRCDYLASCEIKLRHVEDDSTIMWAIGPDSGVIAKQAQFC 423

Query: 430 GDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSS-NFISRTGR 488
           G+E+EM VPFEG NSGEL V +V+KEWQ+SDGSHSLN+  S S Q     S NF  RTGR
Sbjct: 424 GEEIEMVVPFEGSNSGELKVSIVVKEWQYSDGSHSLNSLRSSSSQQSINGSPNFQLRTGR 483

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGEC 548
           KINVTVVEGKDL  KDKSGK DPY+KLQYGK+VQ+TRT H+PN  WNQ FE DEIGGGE 
Sbjct: 484 KINVTVVEGKDLAAKDKSGKFDPYIKLQYGKVVQKTRTVHTPNPAWNQTFEFDEIGGGEY 543

Query: 549 LMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEG 608
           L +K ++EEIFGDEN+GSA VNLEGLVEGSVRD+W+PLE+V +GELRLQI + R DD EG
Sbjct: 544 LKIKGFSEEIFGDENIGSAHVNLEGLVEGSVRDVWIPLERVRSGELRLQI-SIRADDQEG 602

Query: 609 SRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLS 663
           SRG  +G GNGWIELV++E R LVAAD+RGTSDP+V+V YG+ KK+TK+    L+
Sbjct: 603 SRGSGLGLGNGWIELVLIEGRGLVAADVRGTSDPFVRVHYGNFKKKTKVIYKTLN 657

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	680
TAIR|locus:2095062	815	ATSYTF "AT3G18370" [Arabidopsi	0.945	0.788	0.554	3.5e-194
TAIR|locus:2184931	569	SYTD "AT5G11100" [Arabidopsis	0.147	0.175	0.377	1e-14
TAIR|locus:2089601	737	NTMC2T6.2 [Arabidopsis thalian	0.157	0.145	0.3	1.7e-14
TAIR|locus:2024912	751	NTMC2T6.1 [Arabidopsis thalian	0.170	0.154	0.297	5e-13
WB|WBGene00020443	713	esyt-2 [Caenorhabditis elegans	0.258	0.246	0.277	1.2e-12
TAIR|locus:2201036	560	NTMC2T2.1 "AT1G05500" [Arabido	0.160	0.194	0.321	1.8e-11
TAIR|locus:2100992	510	NTMC2T4 [Arabidopsis thaliana	0.138	0.184	0.298	5e-10
POMBASE|SPAPYUK71.03c	1225	syn1 "synaptotagmin family C2	0.125	0.069	0.352	1.1e-09
ZFIN|ZDB-GENE-050506-136	665	mctp2b "multiple C2 domains, t	0.152	0.156	0.283	2.6e-09
MGI|MGI:1344426	1092	Esyt1 "extended synaptotagmin-	0.269	0.167	0.271	2.9e-09

TAIR|locus:2095062 ATSYTF "AT3G18370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1881 (667.2 bits), Expect = 3.5e-194, P = 3.5e-194
 Identities = 364/657 (55%), Positives = 457/657 (69%)

Query:     1 MARSRRKKGARSFALNVEQVVEFWKNLLEEKXXXXXXXXXXXXXXXFERWLFSFSNWVPL 60
             M R  ++KG     +N E   EF  +L+ E+                ERW+F+FSNWVPL
Sbjct:     1 MGRRIKRKGL----INTEAAREFINHLVAERHSLLLLVPLVLAFWAIERWVFAFSNWVPL 56

Query:    61 AIAVWATVQYGQYQHRIHVEELNKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPK 120
              +AVWA++QYG YQ  +  E+L KKW Q +   S ITPLEHC+WLNKLL E+W  Y+N K
Sbjct:    57 VVAVWASLQYGSYQRALLAEDLTKKWRQTVFNASTITPLEHCQWLNKLLSEIWLNYMNKK 116

Query:   121 LSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDW 180
             LS+RFS +VEKRL+ R+ RLIE I+L EFSLGS  P LGLHGT WS SG+Q++M+L F+W
Sbjct:   117 LSLRFSSMVEKRLRQRRSRLIENIQLLEFSLGSCPPLLGLHGTCWSKSGEQKIMRLDFNW 176

Query:   181 DANDISIXXXXXXXXXXXXXXXIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVA 240
             D  D+SI               IV+NSL IKGD+L+ PILEG+A+LYSFVS P+VRIGVA
Sbjct:   177 DTTDLSILLQAKLSMPFNRTARIVVNSLCIKGDILIRPILEGRALLYSFVSNPEVRIGVA 236

Query:   241 FGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVX 300
             FG GG QSLPATELPGVS+WL +++ ETL K +VEPRR C+SLPA DL K A+GGI+YV 
Sbjct:   237 FGGGGGQSLPATELPGVSSWLVKILTETLNKKMVEPRRGCFSLPATDLHKTAIGGIIYVT 296

Query:   301 XXXXXXXXXXXXXXXXXXXQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSD 360
                                 +     S    +   K + TFVE+ELE+L+RRT+ + G +
Sbjct:   297 VVSGNNLNRRILRGSPSKSSEIGEGSSG---NSSSKPVQTFVEVELEQLSRRTEMKSGPN 353

Query:   361 PRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSG 420
             P + S FNM+LH+ TGT++FNLYE  PG V+YD L SCEVKMKYV DDST FWA+G D+G
Sbjct:   354 PAYQSTFNMILHDNTGTLKFNLYENNPGSVRYDSLASCEVKMKYVGDDSTMFWAVGSDNG 413

Query:   421 IIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHXXXXXXXXXXX 480
             +IAKHAEFCG E+EM VPFEGV+SGELTVRL+LKEW FSDGSHSLN+ +           
Sbjct:   414 VIAKHAEFCGQEIEMVVPFEGVSSGELTVRLLLKEWHFSDGSHSLNSVNSSSLHSLDSSS 473

Query:   481 NFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFEL 540
               +S+TGRKI VTV+ GK+L+ KDKSGKCD  VKLQYGKI+Q+T+  ++   VWNQKFE 
Sbjct:   474 ALLSKTGRKIIVTVLAGKNLVSKDKSGKCDASVKLQYGKIIQKTKIVNAAECVWNQKFEF 533

Query:   541 DEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA 600
             +E+ G E L VKCY EE+ G +N+G+A ++L+G +  S   IWVPLE VN+GE+ L IEA
Sbjct:   534 EELAGEEYLKVKCYREEMLGTDNIGTATLSLQG-INNSEMHIWVPLEDVNSGEIELLIEA 592

Query:   601 TRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKL 657
                 D E S      S  G IELV+VEARDLVAAD+RGTSDPYV+VQYG+ K+RTK+
Sbjct:   593 L---DPEYSEAD---SSKGLIELVLVEARDLVAADIRGTSDPYVRVQYGEKKQRTKV 643

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
 Identities = 40/106 (37%), Positives = 61/106 (57%)

Query:   489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRT----AHSPNHVWNQKFE-LDEI 543
             K++V VV+ KDL  KD  GK DPY  +    +  RT+     ++S N +WN+ FE + E 
Sbjct:   265 KLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVED 324

Query:   544 GGGECLMVKCYNEEIFGDENM-GSARVNLEGLVEGSVRDIWVPLEK 588
                + L V+ +++E  G   + G+A+V L  LV G V+DIW+ L K
Sbjct:   325 VSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGKVKDIWLKLVK 370

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

TAIR|locus:2089601 NTMC2T6.2 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
 Identities = 33/110 (30%), Positives = 54/110 (49%)

Query:   492 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFELDEI--GGGEC 548
             V VVE  D+ P D +G  DPYVK Q G    +T+         W ++F++          
Sbjct:   287 VEVVEACDVKPSDLNGLADPYVKGQLGAYRFKTKILWKTLAPKWQEEFKIPICTWDSANI 346

Query:   549 LMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQI 598
             L ++  +++ F D+++G   VN+     G   D+W+PL+ +  G L L I
Sbjct:   347 LNIEVQDKDRFSDDSLGDCSVNIAEFRGGQRNDMWLPLQNIKMGRLHLAI 396

GO:0005576 "extracellular region" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2024912 NTMC2T6.1 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
 Identities = 36/121 (29%), Positives = 60/121 (49%)

Query:   492 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFELDEI--GGGEC 548
             V V E  DL P D +G  DPYVK + G    +T+      +  W+++F++          
Sbjct:   286 VEVFEASDLKPSDLNGLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSI 345

Query:   549 LMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEG 608
             L ++  +++ F D+ +G   VN+E    G   D+W+ L+ +  G L L I  T ++DN  
Sbjct:   346 LNIEVGDKDRFVDDTLGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAI--TVIEDNAK 403

Query:   609 S 609
             S
Sbjct:   404 S 404

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 156 (60.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 55/198 (27%), Positives = 97/198 (48%)

Query:   490 INVTVVEGKDLMPKD----KSGKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFE--LDE 542
             + + ++E K+L  +D    K GK DPY ++Q G    +TRT     N +WN+ FE  +D+
Sbjct:   278 VRLKIIEAKNLENRDISFIKKGKSDPYAEIQVGSQFFKTRTIDDDLNPIWNEYFEAVVDQ 337

Query:   543 IGGGECLMVKCYNEEIFGDENMGSARVNLEGLVE--GSVRDIWVPLEKVNTGELR----- 595
                G+ L ++ ++E+   DE +G   V+L+ LV+  G++ D W PLE    G+L      
Sbjct:   338 -ADGQKLRIELFDEDQGKDEELGRLSVDLK-LVQAKGTI-DKWYPLEGCKHGDLHIKATW 394

Query:   596 --LQIEATRVDDNEGSR--GQNIGSGNGWIELVIVEA-RDLVAADLRGTSDPYVKVQYGD 650
               L  E   ++  E     GQ     +  + +V +++  DL     +    P+V+V  G 
Sbjct:   395 MNLSTELRHLEKQEWEAEWGQADKPIHSALLMVYIDSVADLPYPKSKLEPSPFVEVSLGK 454

Query:   651 LKKRTKLTVACLSGHIQN 668
               +RT + V  ++   Q+
Sbjct:   455 ETQRTPVKVKTVNPLFQS 472

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 37/115 (32%), Positives = 67/115 (58%)

Query:   490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK--IVQRTRTAH-SPNHVWNQKFE-LDEIGG 545
             ++VTV+  +++  +D  GK DPYV L   K     +TR  + S N VWNQ F+ + E G 
Sbjct:   437 LSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRVVNDSLNPVWNQTFDFVVEDGL 496

Query:   546 GECLMVKCYNEEIFGDENMGSARVNLEGLV-EGSVRDIWVPLEKVNTGELRLQIE 599
              + L+++ ++ + FG + +G   + L  ++ E   +D W PL++  TG+L+L ++
Sbjct:   497 HDMLVLEVWDHDTFGKDYIGRCILTLTRVIMEEEYKD-WYPLDESKTGKLQLHLK 550

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0012505 "endomembrane system" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
 Identities = 29/97 (29%), Positives = 53/97 (54%)

Query:   489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQ-RTRTAHSP-NHVWNQKFEL-DEIGG 545
             K+ VTVV+  +L  K+  GK DPY  +    + + +T+   +  N VW+Q FEL  E   
Sbjct:   264 KLIVTVVKATNLKNKELIGKSDPYATIYIRPVFKYKTKAIENNLNPVWDQTFELIAEDKE 323

Query:   546 GECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDI 582
              + L V+ +++++  DE +G  ++ L  L  G  +++
Sbjct:   324 TQSLTVEVFDKDVGQDERLGLVKLPLSSLEAGVTKEL 360

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008289 "lipid binding" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

POMBASE|SPAPYUK71.03c syn1 "synaptotagmin family C2 domain protein, Syn1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 125 (49.1 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
 Identities = 31/88 (35%), Positives = 45/88 (51%)

Query:   100 EHCEWLNKLLMEVWPGYI-NPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCL 158
             E   WLN  L + W  YI  P LS R ++I ++ L    P  I+ + L EF+LG+ SP +
Sbjct:   219 ETVTWLNTFLQQFW--YIFEPSLSERITEITDQILSENVPSFIDSMALSEFTLGTKSPRM 276

Query:   159 GLHGTRWSSSGDQRVMQLGFDWDANDIS 186
             G   +   +  D  +M L   +  NDIS
Sbjct:   277 GFIRSYPKTEEDTVMMDLRLAFSPNDIS 304

GO:0005509 "calcium ion binding" evidence=NAS

GO:0005543 "phospholipid binding" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006906 "vesicle fusion" evidence=NAS

GO:0008289 "lipid binding" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=NAS

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0051286 "cell tip" evidence=IDA

ZFIN|ZDB-GENE-050506-136 mctp2b "multiple C2 domains, transmembrane 2b" [Danio rerio (taxid:7955)]

 Score = 137 (53.3 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
 Identities = 30/106 (28%), Positives = 60/106 (56%)

Query:   490 INVTVVEGKDLMPKDKSGKCDPYVKLQY-GKIVQRTRTA-HSPNHVWNQKFELDEIGGGE 547
             + + + EG++L+ +D+ G  DPYVK++  GK+V +++    + N VWN+ F        +
Sbjct:    53 LTICLKEGRNLVIRDRCGTSDPYVKVKLDGKMVYKSKVVLKNLNPVWNESFTFPIRSLEQ 112

Query:   548 CLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 593
              + +K ++ ++  D+ MGS  V L+ L      ++ +PL+  N+ E
Sbjct:   113 TVFIKVFDRDLTSDDFMGSCSVGLDKLELEKTTEMVLPLDDPNSLE 158

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1344426 Esyt1 "extended synaptotagmin-like protein 1" [Mus musculus (taxid:10090)]

 Score = 146 (56.5 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
 Identities = 57/210 (27%), Positives = 96/210 (45%)

Query:   486 TGRKINVTVVEGKDLMPKDK------SGKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKF 538
             T   + + V+E +DL+ KD+       GK DPYVKL+      RT       N  WN+ F
Sbjct:   632 TENVLRIHVLEAQDLIAKDRFLGGLVKGKSDPYVKLKVAGKSFRTHVVREDLNPRWNEVF 691

Query:   539 EL--DEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRL 596
             E+    I G E L ++ +++++  D+ +G  +V+L  ++     D W+ LE V +G L L
Sbjct:   692 EVIVTSIPGQE-LEIEVFDKDLDKDDFLGRYKVSLTTVLNSGFLDEWLTLEDVPSGRLHL 750

Query:   597 QIE-------ATRVDD--NEGSRGQNIGSGN---GWIELVIVEARDLVAADLRGTS--DP 642
             ++E       A  +++     S  Q   S       + + +  A DL     +GT    P
Sbjct:   751 RLERLTPRPTAAELEEVLQVNSLIQTQKSSELAAALLSVFLERAEDLPLR--KGTKPPSP 808

Query:   643 YVKVQYGDLKKRTKLTVACLSGHIQNSKSS 672
             Y  +  G+   +TK TV+  S  +    +S
Sbjct:   809 YATITVGETSHKTK-TVSQSSAPVWEESAS 837

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	680
cd00030	102	cd00030, C2, C2 domain	1e-16
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	4e-15
pfam00168	85	pfam00168, C2, C2 domain	8e-15
smart00239	101	smart00239, C2, Protein kinase C conserved region	4e-14
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	2e-12
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	1e-11
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	4e-11
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	5e-11
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-10
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	1e-09
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	2e-08
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	6e-08
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	2e-07
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-07
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	6e-07
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	7e-07
cd00030	102	cd00030, C2, C2 domain	1e-06
pfam00168	85	pfam00168, C2, C2 domain	2e-06
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	3e-06
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	4e-06
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	4e-06
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	6e-06
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	1e-05
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	1e-05
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	2e-05
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-05
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	3e-05
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	5e-05
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	8e-05
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-04
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	2e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	5e-04
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	6e-04
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	7e-04
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	8e-04
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	9e-04
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	0.001
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	0.001
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	0.001
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	0.002
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	0.002
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	0.002
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	0.002
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	0.002
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	0.003
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	0.004
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	0.004
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	0.004
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	0.004

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 5/102 (4%)

Query: 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTAH-SPNHVWNQKFELD-EIGGG 546
           + VTV+E ++L  KD +GK DPYVK+  G K   +T+    + N VWN+ FE        
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 547 ECLMVKCYNEEIFG-DENMGSARVNLEGLV-EGSVRDIWVPL 586
           + L V+ ++++ F  D+ +G   + L  L+  G   ++W+PL
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 71.9 bits (177), Expect = 4e-15
 Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 10/117 (8%)

Query: 492 VTVVEGKDLMPKDKS------GKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFE--LDE 542
           + V+E +DL+ KDK       GK DPYV ++ G    +++      N  WN+ +E  +DE
Sbjct: 5   IHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDE 64

Query: 543 IGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 599
           + G E L ++ ++E+   D+ +G   ++L  + +    D W+PLE V +G L L++E
Sbjct: 65  VPGQE-LEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLE 120

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 69.6 bits (171), Expect = 8e-15
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTAH-SPNHVWNQKFELDEI-G 544
           + VTV+  K+L PKD +GK DPYVK+  G   K  ++T+    + N VWN+ F  +    
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 545 GGECLMVKCYNEEIFG-DENMGSAR 568
               L ++ Y+ + FG D+ +G   
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 68.3 bits (167), Expect = 4e-14
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEI- 543
            + V ++  ++L PKDK GK DPYVK+      K  ++T+   ++ N VWN+ FE +   
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 544 GGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW 583
                L ++ Y+++ FG D+ +G   + L  L+ G   +  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 39/126 (30%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFELD----EI 543
           K+ V VV+ +DLMPKD  G    YV+L +    +RTRT     N VWN+K   +      
Sbjct: 1   KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSR 60

Query: 544 GGGECLMVKCYNEEIFGDEN--MGSARVNLEGLV-EGSVRDIWVPLEK-----VNTGELR 595
                L V  YN+   G     +G  R++    V          PLEK        GE+ 
Sbjct: 61  LSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIG 120

Query: 596 LQIEAT 601
           L++  T
Sbjct: 121 LKVYIT 126

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 492 VTVVEGKDLMPKDKSGKCDPYVKLQY-GKIVQRTRTAHSP-NHVWNQKFELDEIGGGEC- 548
           + + EG++L  +D+ G  DPYVK +Y GK V +++T +   N VW++KF L  I      
Sbjct: 4   IHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTL-PIEDVTQP 62

Query: 549 LMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 593
           L +K ++ +    D+ MGSA V+L  L      ++ + LE  N+ E
Sbjct: 63  LYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDE 108

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 15/123 (12%)

Query: 490 INVTVVEGKDLMPKD--KSGKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFELD-EIGG 545
           + V VVE KDL  KD    GK DPY  L  G    +T+T  +  N  WN   E       
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62

Query: 546 GECLMVKCYNE-EIFGDENMGSARVNLEGLV---EGSVRDIWVPLEKVNT-------GEL 594
            + L +  +++    G + +G   + LE +    +    D W+ L+           GE+
Sbjct: 63  NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEI 122

Query: 595 RLQ 597
            LQ
Sbjct: 123 HLQ 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 65.9 bits (161), Expect = 5e-11
 Identities = 77/297 (25%), Positives = 126/297 (42%), Gaps = 41/297 (13%)

Query: 45  WVFERWLFSFSNWVPLAIAVWATVQYGQ--YQHRIHVEELNKKWNQIILKTSPITPL-EH 101
           W+F    FSF++ +   I V   V Y     + R ++ +L ++     L    +    E 
Sbjct: 169 WIFGYLGFSFAS-LFFIILVTMYV-YRTCIKRVRRNIRDLVQQ----ELSEEKLENDYES 222

Query: 102 CEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLH 161
            EWLN  L + WP  I P +S +    V ++L    P  I+ + L EF+LGS  P +   
Sbjct: 223 VEWLNTFLQKFWP-IIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGI 281

Query: 162 GTRWSSSGDQRVMQLGFDWDANDIS--------------ILLLAKLAKPLLGTAK--IVI 205
            +  S+  D  VM + F +  +DIS              I L+ K  K   G+    I++
Sbjct: 282 RSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGK-SFGSFTLPILV 340

Query: 206 NSLHIKGDLLV-------MPILEGKAVLYSFVSIPDVR-IGVAFGSGGSQSLPATELPGV 257
             L  KG + V        P +  K V +  + +P+   I V  G G    +    +PG+
Sbjct: 341 EDLFFKGRVRVRVELMSKYPFI--KTVSFQLLEVPEFDFILVPLG-GDFFGVDIFAIPGL 397

Query: 258 SNWLARLINETLVKTLVEPRRRCYSLPAV--DLRKKAVGGIVYVRVISASKLSRSSL 312
           S ++  +IN TL   L+ P      +  +       A+ G+V V++ SA  L +S  
Sbjct: 398 SRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAI-GVVEVKIKSAEGLKKSDS 453

Length = 1227

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 20/128 (15%)

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFELDEIGGGE 547
           KI++TVV  + L+ KDK+G  DPYV +Q GK  +RT+T     N VWN+KF  +     +
Sbjct: 2   KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSD 61

Query: 548 CLMVKCYNEEI------------FGDENMGSARVNLEGLVEGSVRDIWVPLEKVN----- 590
            + V+ ++E+               D+ +G   + +  L  G + D+W  LEK       
Sbjct: 62  RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL-SGEM-DVWYNLEKRTDKSAV 119

Query: 591 TGELRLQI 598
           +G +RL I
Sbjct: 120 SGAIRLHI 127

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 7/113 (6%)

Query: 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFEL---DEIGG 545
           + + +VEGK+L P D +G  DPYVK + G    +++    + N  W ++F+L   D+   
Sbjct: 2   VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQ 61

Query: 546 GECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQ 597
              L ++ ++++    DE +G   ++L  L       + + LE      L L 
Sbjct: 62  --ILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSLLLLL 112

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 5/88 (5%)

Query: 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH---VWNQKFELD-EIGG 545
           + V VV  ++L PKD +GK DPY+K++ GK     R  + PN    V+ + FEL+  + G
Sbjct: 2   VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG 61

Query: 546 GECLMVKCYN-EEIFGDENMGSARVNLE 572
              L +   + + +  D+ +G   ++LE
Sbjct: 62  NSILKISVMDYDLLGSDDLIGETVIDLE 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 491 NVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQKF 538
            VTV+E +DL+P DK+   + +VK Q G  V RTR +   + N  WN++ 
Sbjct: 3   RVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEEL 52

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 10/108 (9%)

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAH-SPNHVWNQKFEL-- 540
            ++ T++  K L   D +G  DPYVKL            RT+T H + N  +N+      
Sbjct: 16  ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG 75

Query: 541 --DEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPL 586
             +E    + L +   +E+ FG++ +G  R+ L+ L     +   + L
Sbjct: 76  ITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 28/130 (21%), Positives = 61/130 (46%), Gaps = 21/130 (16%)

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG------KIVQRTRTAHSPNHVWNQKFELDE 542
           ++   V+E +DL PKD++G  DP+V++ Y        +V+++         WN+ FE + 
Sbjct: 1   RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPR-----WNEVFEFEL 55

Query: 543 IGGG-ECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT 601
           + G    L V+ ++ ++         + +  G V  S++ +    ++   G  RL  +  
Sbjct: 56  MEGADSPLSVEVWDWDLVS-------KNDFLGKVVFSIQTLQQAKQE--EGWFRLLPDPR 106

Query: 602 RVDDNEGSRG 611
             +++ G+ G
Sbjct: 107 AEEESGGNLG 116

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 483 ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQ 536
           IS    K+ V V E K+L+P D +G  DPYVKL+       +  Q+T+T     N VWN+
Sbjct: 8   ISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNE 67

Query: 537 KFELD 541
            F  D
Sbjct: 68  TFTFD 72

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 47.9 bits (115), Expect = 7e-07
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 8/112 (7%)

Query: 490 INVTVVEGKDLMPKDKSGKCDPYVKLQY-GKIVQRTRTAH---SPNHVWNQKFELDEIGG 545
           + V V+  ++L   D++GK DP+VK    G+ V +T+T     +P  VWN+ FE+     
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNP--VWNESFEVPVPSR 58

Query: 546 GEC-LMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELR 595
               L V+ Y+ +  G D+ +GSA ++L  L      ++ +PL+    G+L 
Sbjct: 59  VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLG 110

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 621 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKK-RTK 656
           + + ++EAR+L A DL G SDPYVKV  G  +K +TK
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTK 37

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 621 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLT 658
           + + ++ A++L   DL G SDPYVKV  G  KK TK T
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKT 38

Length = 85

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 20/113 (17%)

Query: 485 RTGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF 538
            T  ++ V V++ ++L P D  G  DPYVK   LQ GK +++ +T+    + N V+N+ F
Sbjct: 11  PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAF 70

Query: 539 -------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW 583
                  +L+E+     L++   +++  G +E +G  +V L     G   + W
Sbjct: 71  SFDVPAEQLEEV----SLVITVVDKDSVGRNEVIG--QVVLGPDSGGEELEHW 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGE 547
            + V VV G +L  +D +   DPYV L  G    +TR    + N VWN++  L       
Sbjct: 3   LLKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 548 CLMVKCYNEEIF-GDENMGSARVNLEGLVE 576
            L ++ ++++ F  D++MG A ++LE LVE
Sbjct: 62  PLKLEVFDKDTFSKDDSMGEAEIDLEPLVE 91

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 13/115 (11%)

Query: 492 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH----SPNHVWNQ--KFELDEIGG 545
           V V++ ++L  K K  K DPY  L+ G + ++T+T       P   W++  +FE+ E   
Sbjct: 5   VVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHP--EWDEELRFEITE--D 60

Query: 546 GECLM-VKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPL--EKVNTGELRLQ 597
            + ++ V  ++++    + +G   V+L   ++    D W  L  +    GE+ L+
Sbjct: 61  KKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLE 115

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 618 NGWIELVIVEARDLVAADLRGTSDPYVKV--QYGDLKKRTKLTV 659
              I + I++AR+L A D+ GTSDPYVKV   Y D +   K TV
Sbjct: 14  ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTV 57

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 21/36 (58%), Positives = 25/36 (69%)

Query: 621 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
           I + +V A+ L+A D  GTSDPYV VQ G  KKRTK
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTK 38

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 492 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQK--FELDEIGGGE 547
           V ++  K L   D  GK DPYV +Q     ++++ A     N  WN+K  F ++  G G 
Sbjct: 5   VLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGG 64

Query: 548 C--LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVR 580
              L+++  +++ F  D+ +G A ++L+GL E  V 
Sbjct: 65  DTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVE 100

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 490 INVTVVEGKDLMPKDKSGKCDPYVK--LQYG-KIVQRTRTA---HSPNHVWNQKFELD 541
           I V +++ ++L   D +G  DPYVK  L Y  K V++ +T     + N V+N+ F  +
Sbjct: 17  ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 13/118 (11%)

Query: 492 VTVVEGKDLMPKDKSGKCDPYVKL---QYGKIVQRTRT-AHSPNHVWNQKFELDEIGGGE 547
           + +V  ++L     +G  DPYV L      + + +TRT   + N  W+++FEL+   G  
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 548 C-LMVKCYNEEIFGDENM-GSARVNLEGLV---EGSVRDIWVPLEKVNT-GELRLQIE 599
             +    ++    G  ++ G A + L+      +G  R+IW+ L   +T G L L++ 
Sbjct: 65  LWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL---DTQGRLLLRVS 119

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 26/111 (23%)

Query: 497 GKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH---SPNHVWNQ--KFELDEIGGGECLMV 551
            +DL+  DKSG  DP+ ++ +    Q T       SP   W+Q   F+  E+ G      
Sbjct: 10  ARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSP--TWDQTLIFDEVELYGS----P 63

Query: 552 KCYNE-------EIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELR 595
           +   +       E+F  +++G          E   R +  PL K++  E  
Sbjct: 64  EEIAQNPPLVVVELFDQDSVGKD--------EFLGRSVAKPLVKLDLEEDF 106

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRT-AHSPNHVWN 535
           ++ V +VEG+DL P + +GK DPY ++  G    +T+  + + N  WN
Sbjct: 16  RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWN 63

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 6/44 (13%)

Query: 619 GWIELVIVEARDLVAAD------LRGTSDPYVKVQYGDLKKRTK 656
           G + + ++EA+DLVA D      ++G SDPYV V+ G    ++K
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSK 44

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 621 IELVIVEARDLVAADLRGTSDPYVKVQYGDL---KKRTK 656
           + + I+ AR+L   D  G SDPYVKV        KK+TK
Sbjct: 2   LTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTK 40

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 15/117 (12%)

Query: 496 EGKDLMP-KDKSGKCDPYVKLQYGKIVQRTRT-AHSPNHVWNQKFELDEIGGGECLMVKC 553
           +G D++  KD  G  D Y   +YG    RTRT   S N  WN+++          L V  
Sbjct: 10  QGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGV 69

Query: 554 Y-NEEIFGDEN------MGSARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQ 597
           + N +    E       +G  R+ L  L +  V     PL  +N       GEL   
Sbjct: 70  FDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 504 DKSGKCDPYVKLQY-GKIVQRTRTA-HSPNHVWNQKFE--LDEIGGGECLMVKCYNEEIF 559
            K+G   PY +L   GK+V  TR    + N  WN   E  + +      + V   ++   
Sbjct: 8   SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSR-VTVVVKDDRDR 66

Query: 560 GDENMGSARVNLEGLVE-GSVRDIWVPLEKVNTGELRL 596
            D  +GS  ++L  L++  SV   W PL     G +R+
Sbjct: 67  HDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRI 104

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQ-YGKIVQRTR--TAHSPNHVWNQK--FELDE- 542
            + +T++  +DL   +  GK   Y  +       Q T        N  WN+   F LDE 
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDER 60

Query: 543 --IGGGECLMVKCYNEE-IFGDENMGSARVNLEGLVEGS 578
               G   L ++ Y E    GD+ +G  RV L+ L++G+
Sbjct: 61  LLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGA 99

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 15/22 (68%), Positives = 18/22 (81%)

Query: 625 IVEARDLVAADLRGTSDPYVKV 646
           I++A DL A D+ GTSDPYVKV
Sbjct: 22  IIQAADLPAMDMGGTSDPYVKV 43

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 16/123 (13%)

Query: 492 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH-VWNQK--FELDEIGGGEC 548
           VTV++ + L+ K KSG  D YV +Q GK    T         VW ++  FEL  +  G  
Sbjct: 3   VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62

Query: 549 ----LMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDI--WVPLE------KVNTGELR 595
               L +   +  + G D+ +G   + L  L E   R    W  LE          GE+ 
Sbjct: 63  NRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIE 122

Query: 596 LQI 598
           + I
Sbjct: 123 VDI 125

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 15/24 (62%), Positives = 17/24 (70%)

Query: 627 EARDLVAADLRGTSDPYVKVQYGD 650
           E R+L A D  GTSDPYVK +YG 
Sbjct: 8   EGRNLAARDRGGTSDPYVKFKYGG 31

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 491 NVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFE 539
            V V+    L   D  GK DP+  L+      +T T + + N  WN+ F 
Sbjct: 4   QVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFT 53

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 493 TVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFELD---EIGGGEC 548
            VV  K+L      GK D   K+ +  + ++TR      N VWN+ FE          E 
Sbjct: 1   LVVSLKNL--PGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDES 58

Query: 549 LMVKCYN-EEIFGDENMGSARVNLEGLVEGS 578
           L +   + E++  +  +GSA V+L+ LV   
Sbjct: 59  LEIVVKDYEKVGRNRLIGSATVSLQDLVSEG 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 39/149 (26%)

Query: 492 VTVVEGKDLMPKDKSGKCDPY--VKLQYGK--IVQRT---RTAHSPNHVWNQKFELDEIG 544
           V V+E +DL  K  +G CDP+  V L Y      +RT   +  ++P   +++ F  +   
Sbjct: 3   VRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNP--RFDEAFYFELTI 59

Query: 545 GGE----------------CLMVKCYNEE-IFGDENMGSARVNLEGLVEGSVRDIWVPLE 587
           G                   L V+ ++   + GD+ +G  R+ L+GL +      W    
Sbjct: 60  GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAW---- 115

Query: 588 KVNTGELRLQIEATRVDDNEGSRGQNIGS 616
                   LQ           S   ++GS
Sbjct: 116 ------YFLQPREAP--GTRSSNDGSLGS 136

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 619 GWIELVIVEARDLVAADLR--GTSDPYVKVQYGDLKKRT 655
           G + + +VEA+DL A D    G SDPY  +  G  + +T
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKT 39

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)

Query: 610 RGQ---NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKLTVAC 661
           RG+    I   +  + + + EA++L+  D  G SDPYVK++         K++TK     
Sbjct: 1   RGRIYLKISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKT 60

Query: 662 LS 663
           L+
Sbjct: 61  LN 62

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 488 RKINVTVVEGKDLMPKDKSGKCDPY----VKLQYGKIVQRTRTAHSPNHVWNQKFELDEI 543
           RK+ VTV+  +D+  KD+ G    +    V L   K   +T+    PN V+N+ F    +
Sbjct: 16  RKLTVTVIRAQDIPTKDRGG-ASSWQVHLVLLPSKKQRAKTKVQRGPNPVFNETFTFSRV 74

Query: 544 GGGE----CLMVKCYNEEIFGDENM-GSARVNLEGLVEGSVRDIWVPLE 587
              E     L  + Y  E    E + G   V L  L       +W+ LE
Sbjct: 75  EPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 618 NGWIELVIVEARDLVAADLRGTSDPYVKV---QYGDLKKRTKLTV 659
            G + +VI+EA++L   D+ G SDPYVK+   Q G   K+ K T+
Sbjct: 14  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 58

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 484 SRTGR-KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH-VWNQKFELD 541
           +R G   + VTV+    L   D     D YVK+ +G   +RT    + N+  WN  F+  
Sbjct: 23  TRRGLATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFG 81

Query: 542 --EIGGGECLMVKCYNEEIFGDENM-GSARVNLEGLVEGSVRD 581
             E+  G  L  + ++ +   D+++ G+  V  E    G   D
Sbjct: 82  SVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPE---AGVHED 121

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 624 VIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
           V+VE ++L   D  G SDPYVK + G+ K ++K
Sbjct: 5   VLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSK 37

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 625 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
           +V AR+L   D  G SDPY+K++ G  K   +
Sbjct: 6   VVRARNLQPKDPNGKSDPYLKIKLGKKKINDR 37

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 616 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
           SG G + +VIVE RDL   +  G SDPY +V  G  + +TK
Sbjct: 12  SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTK 52

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 9/32 (28%), Positives = 21/32 (65%)

Query: 485 RTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ 516
            + + + V ++  ++L+P D +G  DP+VK++
Sbjct: 13  ASEQSLRVEILNARNLLPLDSNGSSDPFVKVE 44

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 30/84 (35%)

Query: 488 RKINVTVVEGKDLMPKDKSGKCDPY-----VKLQYGKIVQRTRTAHSP------------ 530
             + VTV+E K L+ KD +G  DPY     V     +  ++++   S             
Sbjct: 28  FVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPA 87

Query: 531 -------------NHVWNQKFELD 541
                        N VWN+ F  +
Sbjct: 88  KSIKVTEVKPQTLNPVWNETFRFE 111

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	680
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	100.0
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.94
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.91
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.83
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.83
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.82
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.8
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.79
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.78
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.77
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.77
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.76
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.76
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.75
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.75
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.74
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.74
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.74
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.73
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.73
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.73
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.73
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.73
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.72
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.72
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.72
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.71
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.71
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.71
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.71
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.71
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.7
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.7
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.7
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.7
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.7
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.69
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.69
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.69
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.69
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.68
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.68
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.68
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.68
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.68
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.68
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.68
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.68
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.68
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.68
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.68
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.67
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.67
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.67
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.67
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.66
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.66
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.65
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.65
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.65
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.65
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.64
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.64
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.64
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.64
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.64
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.64
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.64
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.64
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.64
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.63
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.63
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.63
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.63
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.63
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.63
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.63
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.63
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.62
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.62
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.62
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.62
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.62
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.62
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.61
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.61
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.6
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.6
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.6
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.6
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.6
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.6
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.6
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.59
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.59
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.59
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.59
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.59
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.59
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.59
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.58
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.58
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.58
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.58
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.57
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.57
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.57
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.57
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.56
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.56
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.56
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.55
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.55
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.55
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.55
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.55
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.55
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.54
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.54
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.54
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.54
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.54
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.54
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.54
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.54
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.53
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.53
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.52
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.52
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.52
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.52
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.52
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.52
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.52
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.51
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.51
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.51
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.5
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.5
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.5
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.5
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.5
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.5
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.5
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.5
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.5
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.49
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.49
PLN03008	868	Phospholipase D delta	99.49
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.49
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.49
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.49
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.49
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.48
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.48
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.48
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.48
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.47
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.47
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.47
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.47
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.46
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.46
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.46
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.46
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.46
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.45
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.44
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.44
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.44
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.44
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.43
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.43
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.43
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.43
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.42
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.42
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.42
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.42
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.42
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.42
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.41
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.41
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.39
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.38
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.37
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.37
PLN03008	868	Phospholipase D delta	99.37
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.37
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.36
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.32
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.32
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.31
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.28
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.25
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.24
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.24
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.24
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.23
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.22
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.16
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.15
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.09
PF10296	91	DUF2404: Putative integral membrane protein conser	99.05
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	98.99
PLN02270	808	phospholipase D alpha	98.98
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	98.96
cd00030	102	C2 C2 domain. The C2 domain was first identified i	98.89
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	98.87
PLN02223	537	phosphoinositide phospholipase C	98.86
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.77
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.72
PLN02223	537	phosphoinositide phospholipase C	98.7
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.7
PLN02952	599	phosphoinositide phospholipase C	98.67
PLN02230	598	phosphoinositide phospholipase C 4	98.63
PLN02270	808	phospholipase D alpha	98.61
PLN02222	581	phosphoinositide phospholipase C 2	98.59
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.57
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.54
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.51
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.49
PLN02228	567	Phosphoinositide phospholipase C	98.48
PLN02230	598	phosphoinositide phospholipase C 4	98.48
PLN02952	599	phosphoinositide phospholipase C	98.45
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.45
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.44
PLN02222	581	phosphoinositide phospholipase C 2	98.4
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.31
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.3
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.28
PLN02228	567	Phosphoinositide phospholipase C	98.25
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.24
PLN02352	758	phospholipase D epsilon	98.17
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.09
PLN02352	758	phospholipase D epsilon	97.95
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.82
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	97.71
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.65
PLN02964	644	phosphatidylserine decarboxylase	97.56
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.27
PLN02964	644	phosphatidylserine decarboxylase	97.05
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.03
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.02
KOG3837	523	consensus Uncharacterized conserved protein, conta	96.64
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.39
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	96.26
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.31
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.29
PF15627	156	CEP76-C2: CEP76 C2 domain	95.28
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.12
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.02
KOG3837	523	consensus Uncharacterized conserved protein, conta	94.01
KOG3532	1051	consensus Predicted protein kinase [General functi	93.92
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	93.61
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	93.55
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	93.05
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	92.95
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	92.24
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	91.36
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	90.9
KOG1452	442	consensus Predicted Rho GTPase-activating protein	90.57
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	89.96
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	89.84
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	89.51
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	89.42
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	89.34
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	89.06
PF15627	156	CEP76-C2: CEP76 C2 domain	87.34
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	86.73
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	86.71
KOG1452	442	consensus Predicted Rho GTPase-activating protein	85.42
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	84.61
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	83.16
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	83.0
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	81.8
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	80.94
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	80.87

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=100.00  E-value=6.5e-81  Score=695.03  Aligned_cols=591  Identities=21%  Similarity=0.300  Sum_probs=488.1

Q ss_pred             HHHHHHhhhcCC-CccchhHHHHHHHHHHHhhccchhhHHHHHHHhhhheehhhhh--hhhHHHHhhhhhhhhcccCCCC
Q 005736           21 VEFWKNLLEEKP-LLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQYQH--RIHVEELNKKWNQIILKTSPIT   97 (680)
Q Consensus        21 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~~~~~~~   97 (680)
                      ...+..||.+|| +.++++++++++|++||++||++ -+++++++|+++|+...+|  +++|++..+    +........
T Consensus       144 ~y~~~~~y~~w~qs~~i~l~~~v~Swifg~~~fs~~-slffii~~~~~vY~~~~~rv~rnird~v~~----~~~~ek~~n  218 (1227)
T COG5038         144 NYILKKFYGDWYQSVAIVLIGSVASWIFGYLGFSFA-SLFFIILVTMYVYRTCIKRVRRNIRDLVQQ----ELSEEKLEN  218 (1227)
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhc
Confidence            445678999999 99999999999999999999997 5667788888888766665  556766643    333333446


Q ss_pred             CCcChhhHHHHHHhhcccCchHHHHHHHHHHHHHHHhhcCCCccceEEEeEEeeCCCCCeeeeEEEEECCCCCeEEEEEE
Q 005736           98 PLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLG  177 (680)
Q Consensus        98 ~~E~~eWlN~~l~~~W~~~~~~~~~~~i~~~v~~~l~~~~P~~i~~i~~~~~~lG~~pp~i~~v~~~~~~~~~~~~ld~~  177 (680)
                      |+||+||||++|+++||++ +|.+|++|.+++|+.|+++.|+||+++++++||||++||||.+||+|++++.|.+.||++
T Consensus       219 d~ESveWLNtfL~KfW~i~-eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~  297 (1227)
T COG5038         219 DYESVEWLNTFLQKFWPII-EPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD  297 (1227)
T ss_pred             chhHHHHHHHHHHhheecc-ChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence            8999999999999999955 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCeE--------------EEEEEEecCCcce-eeEEEEEeEEEEEEEEE-------eeeeCCcEEEEEecCCCeE
Q 005736          178 FDWDANDIS--------------ILLLAKLAKPLLG-TAKIVINSLHIKGDLLV-------MPILEGKAVLYSFVSIPDV  235 (680)
Q Consensus       178 ~~~~~~~~~--------------i~l~~~~~~~~~g-~~~v~v~~~~~~g~~Rv-------~P~~~~~~v~~sf~~~P~i  235 (680)
                      ++|+++|++              |.|.++.|++... ++||.|+++.|.|++|+       .||+  ++|++||||.|+|
T Consensus       298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~Pfi--ktV~~~Lle~Pe~  375 (1227)
T COG5038         298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFI--KTVSFQLLEVPEF  375 (1227)
T ss_pred             eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcce--eEEEEEEecCcce
Confidence            999997543              7888898876443 88999999999999999       8999  9999999999999


Q ss_pred             EEEEEEcCCCCCccCcccCccHHHHHHHHHHHHHhhccccCcceEEeccccccc-ccCcCeEEEEEEEecCCCCCCC--C
Q 005736          236 RIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLR-KKAVGGIVYVRVISASKLSRSS--L  312 (680)
Q Consensus       236 d~~~~~~~~~~~~~~i~~iP~l~~~i~~~i~~~~~~~~v~P~~~~~~l~~~~~~-~~~~~G~L~V~v~~a~~L~~~d--~  312 (680)
                      ||.+++.+|+.+++||++||||++||+++|+.++++||++|++++++|+.--.. ...++|+|.|+|.+|++|+..+  +
T Consensus       376 df~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i  455 (1227)
T COG5038         376 DFILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTI  455 (1227)
T ss_pred             eEEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccc
Confidence            999999888888999999999999999999999999999999988887431111 3456799999999999999988  3


Q ss_pred             CCCCcccccccCCCCccccccCCCCCCeEEEEEEc-ceeeeecc-CCCCCCccceeEEEEEecCCCeEEEEEEEeCCCCC
Q 005736          313 RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDA-RPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHV  390 (680)
Q Consensus       313 ~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-~~~~~T~v-~~t~nP~Wne~f~~~v~~~~~~l~l~v~d~d~~~~  390 (680)
                      .+                      ..|||+++.+. ....+|++ +++.||+|||+||++++..++.|.++|||++.. .
T Consensus       456 ~~----------------------~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~-~  512 (1227)
T COG5038         456 NG----------------------TVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSF-K  512 (1227)
T ss_pred             cC----------------------CCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEecccc-C
Confidence            33                      25999999976 45679999 799999999999999999999999999998886 7


Q ss_pred             CCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEEEEEeeeecCCCCCCCCCCcC
Q 005736          391 KYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHS  470 (680)
Q Consensus       391 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~l~l~~~~~~~~~~~~~~~~~  470 (680)
                      +|+.+|++.++|..|.+++...                 ++.  ..+....++.|++.+++.+-+... +...       
T Consensus       513 sd~vvG~~~l~L~~L~~~~~~~-----------------ne~--~e~~~~~k~vGrL~yDl~ffp~~e-~k~~-------  565 (1227)
T COG5038         513 SDKVVGSTQLDLALLHQNPVKK-----------------NEL--YEFLRNTKNVGRLTYDLRFFPVIE-DKKE-------  565 (1227)
T ss_pred             CcceeeeEEechHHhhhccccc-----------------cce--eeeeccCccceEEEEeeeeecccC-Cccc-------
Confidence            9999999999999998765310                 000  111223455799999886543211 1110       


Q ss_pred             CCCCcccccc-cccCCCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-CEEEeeecc-CCCCCeeeeEEEEEeeCC-c
Q 005736          471 GSQQSLSGSS-NFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGG-G  546 (680)
Q Consensus       471 ~~~~~~~~~~-~~~~~~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-~~~~~T~~~-~t~nP~wne~f~f~v~~~-~  546 (680)
                           ..++. +......|++.+++.++++|.... ......+++++++ +.++.|+.. .+.+|.||+++...+.+. .
T Consensus       566 -----~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~n  639 (1227)
T COG5038         566 -----LKGSVEPLEDSNTGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKN  639 (1227)
T ss_pred             -----cccccCCcccCCcceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcc
Confidence                 11111 111223469999999999996543 2233344888885 567777888 999999999999999885 7


Q ss_pred             eEEEEEEEEecCCCCceeEEEEEEcccccC-CCeeeEEEeCCCCCCeEEEEEEEEEEecCCCCCCCcc-CCCCCceEEEE
Q 005736          547 ECLMVKCYNEEIFGDENMGSARVNLEGLVE-GSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQN-IGSGNGWIELV  624 (680)
Q Consensus       547 ~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~-~~~~~~w~~L~~~~~G~i~l~l~~~~~~~~~~~~~~~-~~~~~~~L~V~  624 (680)
                      ..+.+.++|..  ..+.||+...+|.++.. ......||++.. .+|+|.++..|.|+....+..... +..+.|.++|.
T Consensus       640 s~~~~~~~d~~--~g~~i~~~~~~l~~li~~t~dt~~~f~~~~-~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~  716 (1227)
T COG5038         640 SSIKVVTFDVQ--SGKVIATEGSTLPDLIDRTLDTFLVFPLRN-PKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVS  716 (1227)
T ss_pred             eeEEEEecccc--cCceeccccccchHhhhccccceEEEEcCC-CcceEEEEeccceeeccccccceeeecCccceEEEE
Confidence            78999999876  36789999999998774 556679999984 689999999999988766544433 67889999999


Q ss_pred             EEEeecCccccCCCCCCCEEEEEECC-eEEeeeeeecCCCCcccceeEEEecCCC
Q 005736          625 IVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKLTVACLSGHIQNSKSSMASNLR  678 (680)
Q Consensus       625 I~~a~~L~~~d~~g~~DPyV~v~lg~-~~~kT~~~k~tlnP~wnE~f~f~V~n~~  678 (680)
                      |..|.||.+....|++|||++|.+++ .++||-....++||+|||..+.+|...-
T Consensus       717 v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~  771 (1227)
T COG5038         717 VRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKN  771 (1227)
T ss_pred             eehhhcccccccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCc
Confidence            99999999888999999999999988 5889999999999999999999987653

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8.6e-26  Score=243.75  Aligned_cols=174  Identities=29%  Similarity=0.405  Sum_probs=157.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~-  559 (680)
                      ..|.|+|++|++|+..+..|.+||||++++   .+.+.+|++. +|+||.|||+|.|.+..   ....|.+.|||.|.+ 
T Consensus       167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfs  246 (421)
T KOG1028|consen  167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFS  246 (421)
T ss_pred             CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcc
Confidence            389999999999999997788999999999   3478999999 99999999999999764   377999999999999 


Q ss_pred             CCceeEEEEEEcccccCCCeeeEEEeCCCC------CCeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCcc
Q 005736          560 GDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVA  633 (680)
Q Consensus       560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~  633 (680)
                      ++++||++.++|..+........|.+|...      ..|+|.++++|.              +..|.|+|.|++|+||+.
T Consensus       247 r~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~--------------p~~g~ltv~v~kar~L~~  312 (421)
T KOG1028|consen  247 RHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYL--------------PTAGRLTVVVIKARNLKS  312 (421)
T ss_pred             cccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEee--------------cCCCeEEEEEEEecCCCc
Confidence            999999999999998876667889999763      237999999999              788999999999999999


Q ss_pred             ccCCCCCCCEEEEEEC--C---eEEeeeeeecCCCCcccceeEEEec
Q 005736          634 ADLRGTSDPYVKVQYG--D---LKKRTKLTVACLSGHIQNSKSSMAS  675 (680)
Q Consensus       634 ~d~~g~~DPyV~v~lg--~---~~~kT~~~k~tlnP~wnE~f~f~V~  675 (680)
                      ++..+.+||||++++-  .   +++||.++++++||+|||+|.|.|.
T Consensus       313 ~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp  359 (421)
T KOG1028|consen  313 MDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVP  359 (421)
T ss_pred             ccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCC
Confidence            9999999999999993  2   5889999999999999999999876

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.1e-23  Score=225.23  Aligned_cols=206  Identities=21%  Similarity=0.317  Sum_probs=168.7

Q ss_pred             cCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccceeEE
Q 005736          293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWDSMFN  368 (680)
Q Consensus       293 ~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wne~f~  368 (680)
                      ....|.|+|.+|++|+..|..|.                      +||||++.+.   ..+++|++ ++++||+|||+|.
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d~~g~----------------------sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~  222 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKDRGGT----------------------SDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFR  222 (421)
T ss_pred             cCCEEEEEEEEecCCCcccCCCC----------------------CCCeeEEEEcCCCCCcceeeeeecCcCCccccceE
Confidence            34899999999999999994443                      3999999997   36789999 7999999999999


Q ss_pred             EEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC---
Q 005736          369 MVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV---  442 (680)
Q Consensus       369 ~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~---  442 (680)
                      |.|...   ...|.|.|||+|++ .++++||++.++|..+.....                      ...|.++...   
T Consensus       223 f~v~~~~l~~~~L~l~V~~~drf-sr~~~iGev~~~l~~~~~~~~----------------------~~~w~~l~~~~~~  279 (421)
T KOG1028|consen  223 FEVPYEELSNRVLHLSVYDFDRF-SRHDFIGEVILPLGEVDLLST----------------------TLFWKDLQPSSTD  279 (421)
T ss_pred             eecCHHHhccCEEEEEEEecCCc-ccccEEEEEEecCcccccccc----------------------ceeeeccccccCC
Confidence            996542   56899999999997 699999999999988864432                      2334444321   


Q ss_pred             ---ceeeEEEEEEEeeeecCCCCCCCCCCcCCCCCcccccccccCCCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEE--
Q 005736          443 ---NSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY--  517 (680)
Q Consensus       443 ---~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--  517 (680)
                         ..|++.+.+.+.+                              ..|.|+|.|++|++|..++..+.+||||++++  
T Consensus       280 ~~~~~gel~~sL~Y~p------------------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~  329 (421)
T KOG1028|consen  280 SEELAGELLLSLCYLP------------------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLD  329 (421)
T ss_pred             cccccceEEEEEEeec------------------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEec
Confidence               1268888775422                              24599999999999999999999999999999  


Q ss_pred             CC---EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC-CCceeEEEEEEccc
Q 005736          518 GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVNLEG  573 (680)
Q Consensus       518 ~~---~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~-~d~~iG~~~i~L~~  573 (680)
                      +.   .+.+|.++ ++.||+|||+|.|.+...   ...|.|+|||++.. ++++||.|.+....
T Consensus       330 ~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  330 GDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             CCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence            22   57789999 999999999999988752   56899999999998 77899999988774

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.83  E-value=5.6e-20  Score=164.36  Aligned_cols=112  Identities=23%  Similarity=0.438  Sum_probs=100.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-C-CCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCcee
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM  564 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~-t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~i  564 (680)
                      |.|.|+|++|++++..+ .+.+||||++.+++++++|+++ + +.||.|||+|.|.+.+....|.|+|||++.+ +|++|
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i   80 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI   80 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence            58999999999988776 6899999999999999999998 5 8999999999999987667899999999998 89999


Q ss_pred             EEEEEEcc-cccCCCeeeEEEeCCC----CCCeEEEEEEEE
Q 005736          565 GSARVNLE-GLVEGSVRDIWVPLEK----VNTGELRLQIEA  600 (680)
Q Consensus       565 G~~~i~L~-~l~~~~~~~~w~~L~~----~~~G~i~l~l~~  600 (680)
                      |++.++|. .+..+...+.|++|.+    ...|+|+|+++|
T Consensus        81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            99999996 5667777899999987    446999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.83  E-value=2.3e-18  Score=194.78  Aligned_cols=380  Identities=13%  Similarity=0.126  Sum_probs=246.6

Q ss_pred             cCccHHHHHHHHHHHHHhhccccCcc---eEEecc----cccc--------cccCcCeEEEEEEEecCCCCCCCCCCCCc
Q 005736          253 ELPGVSNWLARLINETLVKTLVEPRR---RCYSLP----AVDL--------RKKAVGGIVYVRVISASKLSRSSLRGSPS  317 (680)
Q Consensus       253 ~iP~l~~~i~~~i~~~~~~~~v~P~~---~~~~l~----~~~~--------~~~~~~G~L~V~v~~a~~L~~~d~~g~~~  317 (680)
                      .++...+-+.+.|.......++.|.+   -.+.+.    +.++        -...++|+++|.|..|.+|......+.  
T Consensus       654 ~i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~--  731 (1227)
T COG5038         654 VIATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGK--  731 (1227)
T ss_pred             eeccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcc--
Confidence            34667777889999999999998887   112221    2222        134568999999999999986555444  


Q ss_pred             ccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeecc-CCCCCCccceeEEEEEecCCCeEEEEEEEeCCCCCCCcee
Q 005736          318 RRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDA-RPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYL  395 (680)
Q Consensus       318 ~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v-~~t~nP~Wne~f~~~v~~~~~~l~l~v~d~d~~~~~d~~l  395 (680)
                                          +|||+.+.+++ ..++|-. ..+.||.|||..|..+.+..+.+.++++|++.. ++|..+
T Consensus       732 --------------------~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~s-gddr~l  790 (1227)
T COG5038         732 --------------------SDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYEES-GDDRNL  790 (1227)
T ss_pred             --------------------cccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeeeeecchhc-ccccee
Confidence                                49999999986 4677776 689999999999999999999999999999987 699999


Q ss_pred             EEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeecc-CCCceeeEEEEEEEeeeecCCCC------------
Q 005736          396 TSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPF-EGVNSGELTVRLVLKEWQFSDGS------------  462 (680)
Q Consensus       396 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l-~~~~~G~l~~~l~l~~~~~~~~~------------  462 (680)
                      |++.++++++.....       ++.. ....  .|...-..+.+ ....+|.+.+.+.+.+....-..            
T Consensus       791 g~~~i~vsn~~~k~~-------~s~~-~~~i--~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e  860 (1227)
T COG5038         791 GEVNINVSNVSKKDE-------DSAL-METI--DGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSE  860 (1227)
T ss_pred             ceeeeeeeeeeecCC-------Ccce-EEee--cCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhH
Confidence            999999998864211       1100 0000  01000001111 12224666655544332110000            


Q ss_pred             --------C--CC-C----CCcCCCCCc--ccc------------cccccCCCCcEEEEEEEEeecCCCCCCCCCCCcEE
Q 005736          463 --------H--SL-N----NFHSGSQQS--LSG------------SSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYV  513 (680)
Q Consensus       463 --------~--~~-~----~~~~~~~~~--~~~------------~~~~~~~~~~~L~V~I~~a~~L~~~~~~~~~dpyv  513 (680)
                              +  .+ .    +.+....+.  +..            .........|.+.+.++.++-..       +.-|+
T Consensus       861 ~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~-------~~~~l  933 (1227)
T COG5038         861 KRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPD-------PGQYL  933 (1227)
T ss_pred             HHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCC-------cceEE
Confidence                    0  00 0    000000000  000            00111223458888888876332       23456


Q ss_pred             EEEECC--EEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCCCCceeEEEEEEcccccC-CCeeeEEEeCCC
Q 005736          514 KLQYGK--IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIFGDENMGSARVNLEGLVE-GSVRDIWVPLEK  588 (680)
Q Consensus       514 ~v~l~~--~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~-~~~~~~w~~L~~  588 (680)
                      .+.++.  ...-+... .+..+.|.+.-...+.+ .-...+|.|.+.....|+.+++.+++-.++.. .-....|+.+.+
T Consensus       934 ~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g 1013 (1227)
T COG5038         934 QIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPG 1013 (1227)
T ss_pred             EEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCC
Confidence            666643  33333333 45556665554444443 34567788877533368899999888766664 335567888876


Q ss_pred             CCCeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccCCCCCCCEEEEEECCe-EEeeeeeecCCCCccc
Q 005736          589 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKLTVACLSGHIQ  667 (680)
Q Consensus       589 ~~~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~~g~~DPyV~v~lg~~-~~kT~~~k~tlnP~wn  667 (680)
                      .  ..+.+++.|.|+  +..+.+...-...|.|.|.+..|.||+..|.+|.+||||++.++++ .+||+++++|+||+||
T Consensus      1014 ~--~~~~v~~~~tPv--~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwN 1089 (1227)
T COG5038        1014 S--AKVLVQVSYTPV--PVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWN 1089 (1227)
T ss_pred             C--ceEEEEEEEeec--ccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCcc
Confidence            3  678888889877  2222233334567999999999999999999999999999999886 8999999999999999


Q ss_pred             ceeEEEecC
Q 005736          668 NSKSSMASN  676 (680)
Q Consensus       668 E~f~f~V~n  676 (680)
                      |++..+|.|
T Consensus      1090 Ee~~i~v~~ 1098 (1227)
T COG5038        1090 EEFTIEVLN 1098 (1227)
T ss_pred             ccceEeeec
Confidence            999999875

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.82  E-value=7.8e-20  Score=196.21  Aligned_cols=232  Identities=18%  Similarity=0.276  Sum_probs=183.5

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-ceeeeecc-CCCCCCccceeEEEEEe
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDA-RPGSDPRWDSMFNMVLH  372 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-~~~~~T~v-~~t~nP~Wne~f~~~v~  372 (680)
                      ..|.|+|.+|+||++.+..|..                      ||||.|.++ +...||.+ .+++.|-|.|.|+|.+.
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~----------------------D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP   62 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMR----------------------DCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIP   62 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCc----------------------CcceEEeecchhhhhhhhhhhhcCCccccceEEecC
Confidence            5689999999999999877764                      999999998 45778887 89999999999999999


Q ss_pred             cCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc-----eeeE
Q 005736          373 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN-----SGEL  447 (680)
Q Consensus       373 ~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~-----~G~l  447 (680)
                      .....|.|-|||.| . ..|+.||.+.|.-.+|...+                      -.+.|+.|...+     +|++
T Consensus        63 ~~F~~l~fYv~D~d-~-~~D~~IGKvai~re~l~~~~----------------------~~d~W~~L~~VD~dsEVQG~v  118 (800)
T KOG2059|consen   63 RTFRYLSFYVWDRD-L-KRDDIIGKVAIKREDLHMYP----------------------GKDTWFSLQPVDPDSEVQGKV  118 (800)
T ss_pred             cceeeEEEEEeccc-c-ccccccceeeeeHHHHhhCC----------------------CCccceeccccCCChhhceeE
Confidence            88899999999999 4 69999999999888875322                      235677775443     6999


Q ss_pred             EEEEEEeeeecCCCCCCCCCCcCCCCCcccccccccCCCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----EEEe
Q 005736          448 TVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK----IVQR  523 (680)
Q Consensus       448 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~----~~~~  523 (680)
                      ++++.+..     +.                       +..-+...+++++++.+.. ++.+|||+.+...+    +..+
T Consensus       119 ~l~l~~~e-----~~-----------------------~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~  169 (800)
T KOG2059|consen  119 HLELALTE-----AI-----------------------QSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKK  169 (800)
T ss_pred             EEEEEecc-----cc-----------------------CCCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccc
Confidence            98886532     10                       0113556666666776665 35599999999954    3469


Q ss_pred             eecc-CCCCCeeeeEEEEEeeCC----------------ceEEEEEEEEecCC--CCceeEEEEEEcccccCCCeeeEEE
Q 005736          524 TRTA-HSPNHVWNQKFELDEIGG----------------GECLMVKCYNEEIF--GDENMGSARVNLEGLVEGSVRDIWV  584 (680)
Q Consensus       524 T~~~-~t~nP~wne~f~f~v~~~----------------~~~L~i~V~d~~~~--~d~~iG~~~i~L~~l~~~~~~~~w~  584 (680)
                      |+++ +|.+|.|+|.|+|.+...                ...|++++|++...  .+.|+|++.+++..+........||
T Consensus       170 T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~  249 (800)
T KOG2059|consen  170 TKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWY  249 (800)
T ss_pred             cceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceE
Confidence            9999 999999999999997633                23688999995544  7999999999999988677778999


Q ss_pred             eCCCCC----------CeEEEEEEEEE
Q 005736          585 PLEKVN----------TGELRLQIEAT  601 (680)
Q Consensus       585 ~L~~~~----------~G~i~l~l~~~  601 (680)
                      .|....          -|.+++.+.|.
T Consensus       250 ~Lqp~~~g~~~~~~~~lGslrl~v~y~  276 (800)
T KOG2059|consen  250 YLQPRPNGEKSSDGGDLGSLRLNVTYT  276 (800)
T ss_pred             EEecCCCcccCCCCCCccceeeeEEee
Confidence            997532          37888998887

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.80  E-value=7.1e-19  Score=157.24  Aligned_cols=113  Identities=12%  Similarity=0.241  Sum_probs=94.3

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-C-CCCCCccceeEEEEE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-R-PGSDPRWDSMFNMVL  371 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~-~t~nP~Wne~f~~~v  371 (680)
                      +|.|+|+|++|++++..+ .|.+                      ||||++.++++..+|++ . ++.||+|||+|.|.+
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~s----------------------DPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v   57 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRM----------------------DPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTL   57 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCC----------------------CceEEEEECCEEEEeEEccCCCCCCccCeEEEEEe
Confidence            499999999999988766 4543                      99999999999999998 4 489999999999999


Q ss_pred             ecCCCeEEEEEEEeCCCCCCCceeEEEEEecc-cccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCC----Cceee
Q 005736          372 HEETGTVRFNLYECIPGHVKYDYLTSCEVKMK-YVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEG----VNSGE  446 (680)
Q Consensus       372 ~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~----~~~G~  446 (680)
                      .+..+.|.|+|||+|.. ++|++||++.+++. .+..                      |+..+.|++|.+    ...|+
T Consensus        58 ~~~~~~l~~~V~d~d~~-~~dd~iG~~~i~l~~~~~~----------------------g~~~~~W~~L~~~~~~~~~g~  114 (121)
T cd04016          58 PEGVDSIYIEIFDERAF-TMDERIAWTHITIPESVFN----------------------GETLDDWYSLSGKQGEDKEGM  114 (121)
T ss_pred             cCCCcEEEEEEEeCCCC-cCCceEEEEEEECchhccC----------------------CCCccccEeCcCccCCCCceE
Confidence            87667899999999987 58999999999996 4532                      334577888876    34699


Q ss_pred             EEEEEE
Q 005736          447 LTVRLV  452 (680)
Q Consensus       447 l~~~l~  452 (680)
                      |++++.
T Consensus       115 i~l~l~  120 (121)
T cd04016         115 INLVFS  120 (121)
T ss_pred             EEEEEe
Confidence            998874

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.79  E-value=3.4e-19  Score=191.38  Aligned_cols=176  Identities=19%  Similarity=0.250  Sum_probs=151.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeEE
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS  566 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~  566 (680)
                      .|.|.|.+|+||+..+..|..||||.|.++. .+.||.++ +++.|.|.|.|+|.++..-..|.|-|||.|..+|+.||.
T Consensus         6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d~~~D~~IGK   85 (800)
T KOG2059|consen    6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRDLKRDDIIGK   85 (800)
T ss_pred             ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccccccccccce
Confidence            5999999999999999999999999999965 78999999 999999999999999988899999999999339999999


Q ss_pred             EEEEcccccCCCeeeEEEeCCCCC-----CeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccCCCCCC
Q 005736          567 ARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSD  641 (680)
Q Consensus       567 ~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~~g~~D  641 (680)
                      +.|.=.++...+..+.|+.|+..+     +|+|++++.+.+...            ...++..++.++++.+.+.+ .+|
T Consensus        86 vai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~------------~~~~~c~~L~~r~~~P~~~~-~~d  152 (800)
T KOG2059|consen   86 VAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ------------SSGLVCHVLKTRQGLPIING-QCD  152 (800)
T ss_pred             eeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC------------CCcchhhhhhhcccCceeCC-CCC
Confidence            999998888777888999998643     799999998874332            23456666677787776554 599


Q ss_pred             CEEEEEECC----eEEeeeeeecCCCCcccceeEEEecCC
Q 005736          642 PYVKVQYGD----LKKRTKLTVACLSGHIQNSKSSMASNL  677 (680)
Q Consensus       642 PyV~v~lg~----~~~kT~~~k~tlnP~wnE~f~f~V~n~  677 (680)
                      ||++|...+    +..+|+++++|.||.|||.|+|.+.-.
T Consensus       153 p~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~  192 (800)
T KOG2059|consen  153 PFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTRE  192 (800)
T ss_pred             cceEEeecccchhhccccceeeeccCcchhhheeeeeccc
Confidence            999999965    356999999999999999999998753

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.78  E-value=1.5e-18  Score=157.83  Aligned_cols=110  Identities=28%  Similarity=0.510  Sum_probs=98.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC------CceEEEEEEEEecCC-CC
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG------GGECLMVKCYNEEIF-GD  561 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~------~~~~L~i~V~d~~~~-~d  561 (680)
                      ++|+|++|+||+..+..+.+||||++.++++.++|+++ ++.||.|||+|.|.+..      ....|.|+|||++.. +|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            57999999999998888999999999999999999999 99999999999999876      367899999999987 79


Q ss_pred             ceeEEEEEEccccc--CCCeeeEEEeCCCC------CCeEEEEEEE
Q 005736          562 ENMGSARVNLEGLV--EGSVRDIWVPLEKV------NTGELRLQIE  599 (680)
Q Consensus       562 ~~iG~~~i~L~~l~--~~~~~~~w~~L~~~------~~G~i~l~l~  599 (680)
                      ++||++.++|+++.  .+.....||+|.+.      ..|+|+++++
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            99999999999987  45667899999752      3599998863

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.77  E-value=4.4e-18  Score=153.15  Aligned_cols=107  Identities=28%  Similarity=0.421  Sum_probs=97.1

Q ss_pred             EEEEEEEeec---CCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC------
Q 005736          490 INVTVVEGKD---LMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF------  559 (680)
Q Consensus       490 L~V~I~~a~~---L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~------  559 (680)
                      |.|+|++|+|   |..++..|.+||||++.++++..||+++ ++.||.|||+|.|.+.+....|.|+|||++..      
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~   81 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV   81 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence            8999999999   8888889999999999999999999999 99999999999999988777999999999875      


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCCC------CCeEEEE
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRL  596 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l  596 (680)
                       +|++||++.++|+++..+.....||+|...      ..|+|++
T Consensus        82 ~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          82 QPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             CCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence             799999999999999988888999999843      3466654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=9.2e-18  Score=150.29  Aligned_cols=112  Identities=27%  Similarity=0.505  Sum_probs=103.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCceeE
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      +++|+|++|+||+..+..+.+||||+++++++.++|+++ ++.||.|||+|.|.+.+. ...|.|+|||++.. ++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            378999999999999888999999999999999999999 999999999999998875 78999999999987 899999


Q ss_pred             EEEEEcccccCCCeeeEEEeCCCCCCeEEEEEEEEE
Q 005736          566 SARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT  601 (680)
Q Consensus       566 ~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l~~~  601 (680)
                      ++.++|.++..+.....|++|++. .|+|++.+.|.
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~  115 (116)
T cd08376          81 RCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT  115 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence            999999999888889999999974 69999998774

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.76  E-value=1.2e-17  Score=150.76  Aligned_cols=113  Identities=32%  Similarity=0.537  Sum_probs=103.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      +|+|+|++|++|+..+..+.+||||++.+++ ..++|+++ ++.||.|||+|.|.+.+..+.|.|+|||++.. ++++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            3899999999999988889999999999976 78899999 99999999999999887678899999999988 899999


Q ss_pred             EEEEEcccccCCCeeeEEEeCCCCC----CeEEEEEEEEE
Q 005736          566 SARVNLEGLVEGSVRDIWVPLEKVN----TGELRLQIEAT  601 (680)
Q Consensus       566 ~~~i~L~~l~~~~~~~~w~~L~~~~----~G~i~l~l~~~  601 (680)
                      .+.++|+++..+...+.|++|.+..    .|+|++.+++.
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~  120 (121)
T cd04042          81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT  120 (121)
T ss_pred             EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence            9999999999888889999997543    59999999875

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.76  E-value=1.1e-17  Score=151.07  Aligned_cols=113  Identities=30%  Similarity=0.552  Sum_probs=102.5

Q ss_pred             cEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCC
Q 005736          488 RKINVTVVEGKDLMPKDK------SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~------~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~  559 (680)
                      |.|+|+|++|+||+..+.      .+.+||||+++++++.++|+++ ++.||.|||.|.|.+.+ ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            479999999999988764      3689999999999999999999 99999999999999875 477999999999877


Q ss_pred             CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEEEE
Q 005736          560 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA  600 (680)
Q Consensus       560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l~~  600 (680)
                      ++++||.+.++|.++..+...+.||+|.+..+|+|+++++|
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence            88999999999999988777889999998888999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.75  E-value=6.9e-18  Score=151.60  Aligned_cols=113  Identities=22%  Similarity=0.407  Sum_probs=100.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-C-CCCCeeeeEEEEEeeCC-ceEEEEEEEEecCCCCcee
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM  564 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~-t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~d~~i  564 (680)
                      |.|+|+|++|++|+..+..+.+||||++.+++...+|+++ + +.||.|||.|.|.+..+ .+.|.|+|||++...|++|
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i   80 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI   80 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence            4799999999999998888999999999999999999987 4 78999999999999864 6789999999987678999


Q ss_pred             EEEEEEcccccCCCeeeEEEeCCCC--CCeEEEEEEEE
Q 005736          565 GSARVNLEGLVEGSVRDIWVPLEKV--NTGELRLQIEA  600 (680)
Q Consensus       565 G~~~i~L~~l~~~~~~~~w~~L~~~--~~G~i~l~l~~  600 (680)
                      |++.+++.++..+.....|++|...  ..|+|+++++|
T Consensus        81 G~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          81 GDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             EEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence            9999999998776677899999864  36999999875

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.75  E-value=2.6e-17  Score=151.09  Aligned_cols=114  Identities=23%  Similarity=0.474  Sum_probs=103.0

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCce
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN  563 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~  563 (680)
                      .|.|+|+|++|++|+..+..+.+||||+++++++.++|+++ ++.||.|||+|.|.+.+. .+.|.|+|||++.. +|++
T Consensus        14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~   93 (136)
T cd08375          14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDF   93 (136)
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCe
Confidence            46999999999999998888999999999999999999999 999999999999999764 67899999999987 8999


Q ss_pred             eEEEEEEcccccC-----CCeeeEEEeCCCCCCeEEEEEEEE
Q 005736          564 MGSARVNLEGLVE-----GSVRDIWVPLEKVNTGELRLQIEA  600 (680)
Q Consensus       564 iG~~~i~L~~l~~-----~~~~~~w~~L~~~~~G~i~l~l~~  600 (680)
                      ||++.++|.++..     ......|..|.+...|+|++++.+
T Consensus        94 lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          94 LGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             eEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            9999999999885     334568899988888999999865

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.74  E-value=2.1e-17  Score=150.65  Aligned_cols=113  Identities=31%  Similarity=0.521  Sum_probs=101.5

Q ss_pred             cEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCC-CCc
Q 005736          488 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDE  562 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~-~d~  562 (680)
                      |.|+|+|++|++|+..+.  .+.+||||++.++++.++|+++ ++.||.|||+|.|.+.+ ....|.|+|||++.. +++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            589999999999998887  7899999999999999999999 99999999999999987 578999999999988 899


Q ss_pred             eeEEEEEEccccc---CCCeeeEEEeCCCC-------CCeEEEEEEEE
Q 005736          563 NMGSARVNLEGLV---EGSVRDIWVPLEKV-------NTGELRLQIEA  600 (680)
Q Consensus       563 ~iG~~~i~L~~l~---~~~~~~~w~~L~~~-------~~G~i~l~l~~  600 (680)
                      +||++.++|.++.   .......||+|.+.       .+|+|++++.|
T Consensus        81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            9999999999987   33456899999865       37999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.74  E-value=3.3e-17  Score=152.75  Aligned_cols=112  Identities=28%  Similarity=0.447  Sum_probs=99.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-C-CCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCceeE
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~-t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      |+|+|++|++|++.+..|.+||||++.++++..+|++. + +.||.|||.|.|.+.++ .+.|.|+|||++.. +|++||
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG   81 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG   81 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence            89999999999999989999999999999999999999 6 69999999999999764 56899999999987 899999


Q ss_pred             EEEEEcccccCC----CeeeEEEeCCCCC-----------CeEEEEEEEEE
Q 005736          566 SARVNLEGLVEG----SVRDIWVPLEKVN-----------TGELRLQIEAT  601 (680)
Q Consensus       566 ~~~i~L~~l~~~----~~~~~w~~L~~~~-----------~G~i~l~l~~~  601 (680)
                      ++.++|+++..+    ....+||+|.+..           .|+|+|++++.
T Consensus        82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence            999999998642    4568999998643           39999999876

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.74  E-value=2.6e-17  Score=149.64  Aligned_cols=112  Identities=19%  Similarity=0.267  Sum_probs=92.0

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec--
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE--  373 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~--  373 (680)
                      ++|+|++|++|+..+..|.+                      ||||++.++++.++|++ ++++||+|||+|.|.+..  
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~----------------------dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~   58 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTN----------------------DAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLL   58 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCC----------------------CceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcc
Confidence            58999999999998866543                      99999999999999998 789999999999999877  


Q ss_pred             ----CCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC------c
Q 005736          374 ----ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV------N  443 (680)
Q Consensus       374 ----~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~------~  443 (680)
                          ....|.|.|||++.. ++|++||++.++|+++....                    +...+.|++|.+.      .
T Consensus        59 ~~~~~~~~l~~~v~d~~~~-~~d~~iG~~~i~l~~l~~~~--------------------~~~~~~W~~L~~~~~~~~~~  117 (126)
T cd08682          59 SGNGNRATLQLTVMHRNLL-GLDKFLGQVSIPLNDLDEDK--------------------GRRRTRWFKLESKPGKDDKE  117 (126)
T ss_pred             cCCCcCCEEEEEEEEcccc-CCCceeEEEEEEHHHhhccC--------------------CCcccEEEECcCCCCCCccc
Confidence                256799999999976 58999999999999986221                    2245678888643      2


Q ss_pred             eeeEEEEE
Q 005736          444 SGELTVRL  451 (680)
Q Consensus       444 ~G~l~~~l  451 (680)
                      .|+|++++
T Consensus       118 ~Gei~l~~  125 (126)
T cd08682         118 RGEIEVDI  125 (126)
T ss_pred             cceEEEEe
Confidence            58888765

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.73  E-value=3e-17  Score=149.39  Aligned_cols=112  Identities=33%  Similarity=0.479  Sum_probs=99.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC----ceEEEEEEEEecCC--CCc
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEEIF--GDE  562 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~----~~~L~i~V~d~~~~--~d~  562 (680)
                      |+|+|++|++|...+..+.+||||+++++++.++|+++ ++.||.|||.|.|.+.++    ...|.|+|||++..  +++
T Consensus         2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~   81 (127)
T cd04022           2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS   81 (127)
T ss_pred             eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence            89999999999998888999999999999999999999 999999999999998753    35899999998876  689


Q ss_pred             eeEEEEEEccccc-CCCeeeEEEeCCCC-----CCeEEEEEEEEE
Q 005736          563 NMGSARVNLEGLV-EGSVRDIWVPLEKV-----NTGELRLQIEAT  601 (680)
Q Consensus       563 ~iG~~~i~L~~l~-~~~~~~~w~~L~~~-----~~G~i~l~l~~~  601 (680)
                      +||++.++++++. .+.....||+|+..     .+|+|+|++.+.
T Consensus        82 ~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          82 FLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             eeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            9999999999987 56677899999864     379999998653

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.73  E-value=3.7e-17  Score=147.18  Aligned_cols=110  Identities=23%  Similarity=0.393  Sum_probs=97.5

Q ss_pred             EEEEEEEeecCCCCC-CCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736          490 INVTVVEGKDLMPKD-KSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       490 L~V~I~~a~~L~~~~-~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      |.|+|++|+||+..+ ..+.+||||++.+++ ..++|+++ +|.||.|||+|.|.+.+....|.|.|||++.. ++++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            689999999998864 457899999999976 47899999 99999999999999987678999999999988 899999


Q ss_pred             EEEEEcccccCCCeeeEEEeCCCC-----CCeEEEEEEE
Q 005736          566 SARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIE  599 (680)
Q Consensus       566 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~  599 (680)
                      .+.++++++..+...+.||+|+..     ..|+|++++.
T Consensus        82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR  120 (121)
T ss_pred             EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence            999999999877778999999863     2699999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.73  E-value=5.2e-17  Score=146.07  Aligned_cols=111  Identities=23%  Similarity=0.337  Sum_probs=100.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCCCCcee
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM  564 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~d~~i  564 (680)
                      |.|+|++|++|+..+..+.+||||+++++   ...++|+++ ++.||.|||+|.|.+... ...|.|+|||++..+|++|
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i   81 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL   81 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence            78999999999988888899999999994   467899999 999999999999998764 5679999999987788999


Q ss_pred             EEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEEEE
Q 005736          565 GSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA  600 (680)
Q Consensus       565 G~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l~~  600 (680)
                      |++.+++.++..+.....|++|.+.++|++++.+..
T Consensus        82 G~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          82 GTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             EEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence            999999999998888999999998888999988754

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.73  E-value=7.8e-17  Score=147.97  Aligned_cols=122  Identities=15%  Similarity=0.307  Sum_probs=100.9

Q ss_pred             CcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEE
Q 005736          292 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMV  370 (680)
Q Consensus       292 ~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~  370 (680)
                      ...|.|+|+|++|++|++.|..|.                      +||||++.++.+..+|++ +++.||.|||+|.|.
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~----------------------~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~   69 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGK----------------------SDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFF   69 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCC----------------------cCcEEEEEECCEeeeccccCCCCCCccCceEEEE
Confidence            345999999999999999886664                      399999999999999998 799999999999999


Q ss_pred             EecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEE
Q 005736          371 LHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTV  449 (680)
Q Consensus       371 v~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~  449 (680)
                      +.+. .+.|.|+|||+|.. .+|++||++.+++.++......                 .......|.++..++.|++++
T Consensus        70 v~~~~~~~l~i~V~D~d~~-~~d~~lG~~~i~l~~l~~~~~~-----------------~~~~~~~~~~~~~~~~g~i~l  131 (136)
T cd08375          70 VKDLEQDVLCITVFDRDFF-SPDDFLGRTEIRVADILKETKE-----------------SKGPITKRLLLHEVPTGEVVV  131 (136)
T ss_pred             ecCccCCEEEEEEEECCCC-CCCCeeEEEEEEHHHhcccccc-----------------CCCcEEEEeccccccceeEEE
Confidence            9875 56899999999976 5899999999999998753210                 011334567788888899999


Q ss_pred             EEEE
Q 005736          450 RLVL  453 (680)
Q Consensus       450 ~l~l  453 (680)
                      ++.+
T Consensus       132 ~~~~  135 (136)
T cd08375         132 KLDL  135 (136)
T ss_pred             EEEe
Confidence            8864

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.73  E-value=5e-17  Score=146.31  Aligned_cols=91  Identities=18%  Similarity=0.336  Sum_probs=80.4

Q ss_pred             EEEEEEEecCC---CCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736          296 IVYVRVISASK---LSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       296 ~L~V~v~~a~~---L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      .|.|+|++|++   |+..|..|.+                      ||||+++++.+..+|++ ++++||+|||+|+|.+
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~s----------------------DPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v   58 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGST----------------------DAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPV   58 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCC----------------------CeeEEEEECCEEeEcCcccCCCCCcceeEEEEEe
Confidence            38999999999   7888876653                      99999999999999999 7899999999999999


Q ss_pred             ecCCCeEEEEEEEeCCCC-----CCCceeEEEEEecccccCC
Q 005736          372 HEETGTVRFNLYECIPGH-----VKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       372 ~~~~~~l~l~v~d~d~~~-----~~d~~lG~~~i~l~~l~~~  408 (680)
                      .+....|.|+|||+|..+     .+|++||++.++|..+..+
T Consensus        59 ~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~  100 (126)
T cd08379          59 YDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDD  100 (126)
T ss_pred             cCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCC
Confidence            887778999999988741     3899999999999998643

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.72  E-value=7.8e-17  Score=145.26  Aligned_cols=98  Identities=23%  Similarity=0.343  Sum_probs=88.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEe-eC---CceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDE-IG---GGECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v-~~---~~~~L~i~V~d~~  557 (680)
                      +.|.|+|++|+||+..+ .+.+||||++++.     ..+.+|+++ ++.||.|||+|.|.+ ..   ....|.|+|||++
T Consensus        13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d   91 (122)
T cd08381          13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD   91 (122)
T ss_pred             CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence            48999999999999999 8999999999994     357899999 999999999999997 32   3678999999999


Q ss_pred             CC-CCceeEEEEEEcccccCCCeeeEEEeC
Q 005736          558 IF-GDENMGSARVNLEGLVEGSVRDIWVPL  586 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L  586 (680)
                      .. ++++||++.++|.++..++....||+|
T Consensus        92 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          92 SLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            88 899999999999999887778899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.72  E-value=2e-17  Score=150.75  Aligned_cols=91  Identities=18%  Similarity=0.364  Sum_probs=85.3

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEe
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLH  372 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~  372 (680)
                      .|.|+|+|.+|.+|..+|..+++                      ||||++++|+++.+|++ ++++||+|||.|.|.+.
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sS----------------------DPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~   62 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSS----------------------DPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVK   62 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCC----------------------CCeEEEEECCeeeeeeeecCCCCCcccceEEEEec
Confidence            49999999999999999986653                      99999999999999998 89999999999999999


Q ss_pred             cCCCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          373 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       373 ~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      +....|.+.|||+|.+ .+||+||.++|+|+.+..
T Consensus        63 d~~~~lkv~VyD~D~f-s~dD~mG~A~I~l~p~~~   96 (168)
T KOG1030|consen   63 DPNTPLKVTVYDKDTF-SSDDFMGEATIPLKPLLE   96 (168)
T ss_pred             CCCceEEEEEEeCCCC-CcccccceeeeccHHHHH
Confidence            9999999999999997 699999999999998863

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.72  E-value=8.1e-17  Score=145.95  Aligned_cols=100  Identities=22%  Similarity=0.390  Sum_probs=88.7

Q ss_pred             cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~-~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~  557 (680)
                      +.|.|+|++|+||++++.. +.+||||++++.     ..+++|+++ ++.||.|||+|.|.+..   ....|.|+|||++
T Consensus        15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~   94 (125)
T cd08393          15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRD   94 (125)
T ss_pred             CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCC
Confidence            3899999999999998875 889999999992     246799999 99999999999999874   3568999999999


Q ss_pred             CC-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      .. ++++||++.++|.++..+.....||+|+
T Consensus        95 ~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          95 SLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             CCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            88 8999999999999998777778999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=1.7e-16  Score=146.18  Aligned_cols=102  Identities=24%  Similarity=0.333  Sum_probs=89.4

Q ss_pred             cEEEEEEEEeecCCCCC-CCCCCCcEEEEEE--CC---EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEE-EecCC
Q 005736          488 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY-NEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~-~~~~~dpyv~v~l--~~---~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~-d~~~~  559 (680)
                      +.|.|+|++|+||.+.+ ..+.+||||++++  ++   .+.||+++ +++||+|||+|.|.+......|.|+|| |++..
T Consensus        29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~  108 (146)
T cd04028          29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRM  108 (146)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCC
Confidence            48999999999998764 5678999999999  32   47899999 999999999999999866889999999 56666


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKV  589 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  589 (680)
                       ++++||++.|+|+++..+.....||+|.+.
T Consensus       109 ~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028         109 DKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence             889999999999998777777899999864

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.71  E-value=1.3e-16  Score=144.98  Aligned_cols=112  Identities=17%  Similarity=0.308  Sum_probs=99.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC--CEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG--KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~--~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      |.|+|++|+||+.  ..+.+||||+++++  .+.++|+++ ++.||.|||.|.|.+......|.|+|||++.. ++++||
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG   78 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG   78 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence            5799999999987  56899999999996  467899999 99999999999999976677899999999988 799999


Q ss_pred             EEEEEcccccCCCeeeEEEeCCCC------CCeEEEEEEEEEEe
Q 005736          566 SARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRV  603 (680)
Q Consensus       566 ~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~~~~  603 (680)
                      ++.+++.++........|++|.+.      ..|+|.+.+.|.+.
T Consensus        79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence            999999999987777899999854      37999999999843

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.71  E-value=1.2e-16  Score=140.66  Aligned_cols=97  Identities=14%  Similarity=0.229  Sum_probs=84.1

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecC
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK----IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI  558 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~----~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~  558 (680)
                      .+.|.|+|++|+||+ .  .+.+||||++++..    .+++|+++ +|+||+|||+|.|.+..   +..+|.|+|||+|.
T Consensus        13 ~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr   89 (118)
T cd08677          13 KAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR   89 (118)
T ss_pred             CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC
Confidence            458999999999998 3  36699999999932    57799999 99999999999999875   36789999999999


Q ss_pred             C-CCceeEEEEEEcccccCCCeeeEEEeC
Q 005736          559 F-GDENMGSARVNLEGLVEGSVRDIWVPL  586 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L  586 (680)
                      + ++++||++.++++++..+...++|..|
T Consensus        90 fs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          90 FSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCCCceEEEEEEccccccCCccccchhcC
Confidence            9 999999999999998766666788654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.71  E-value=2.2e-16  Score=148.80  Aligned_cols=113  Identities=24%  Similarity=0.441  Sum_probs=99.6

Q ss_pred             cEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECC-EEEeeecc-CCCCCeee
Q 005736          488 RKINVTVVEGKDLMPKD------------------------------KSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWN  535 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~------------------------------~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wn  535 (680)
                      |.|.|+|++|++|+.+|                              ..|.+||||+|.+++ +..+|+++ ++.||.||
T Consensus         7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn   86 (158)
T cd04015           7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN   86 (158)
T ss_pred             eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence            58999999999999877                              246689999999986 45799999 99999999


Q ss_pred             eEEEEEeeCCceEEEEEEEEecCCCCceeEEEEEEcccccCCCeeeEEEeCCCC------CCeEEEEEEEE
Q 005736          536 QKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEA  600 (680)
Q Consensus       536 e~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~  600 (680)
                      |+|.|.+....+.|.|.|||++..++++||.+.++++++..+...+.|++|.+.      ..|+|+++++|
T Consensus        87 E~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          87 ESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             eEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence            999999887777899999999877778999999999999888888999999753      25899999987

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.71  E-value=1.2e-16  Score=143.91  Aligned_cols=107  Identities=25%  Similarity=0.422  Sum_probs=94.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCCCCceeEEE
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIFGDENMGSA  567 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~~d~~iG~~  567 (680)
                      |.|+|++|+||+..    .+||||++.++++..+|+++ ++.||.|||+|.|.+.. ....|.|+|||++..++++||++
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~   77 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGV   77 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeE
Confidence            88999999999876    68999999999999999999 99999999999999876 47889999999987788999999


Q ss_pred             EEEcccccCC-----CeeeEEEeCCCCC----CeEEEEEEEE
Q 005736          568 RVNLEGLVEG-----SVRDIWVPLEKVN----TGELRLQIEA  600 (680)
Q Consensus       568 ~i~L~~l~~~-----~~~~~w~~L~~~~----~G~i~l~l~~  600 (680)
                      .++|+++...     .....||+|.+..    +|+|++++.|
T Consensus        78 ~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          78 CFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             EEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            9999998742     2357999998754    5999999866

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.70  E-value=2.1e-16  Score=143.16  Aligned_cols=100  Identities=21%  Similarity=0.337  Sum_probs=88.4

Q ss_pred             cEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~-~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~  557 (680)
                      +.|.|+|++|+||+..+. .+.+||||++++.     ..+++|+++ ++.||.|||+|.|.+..   ....|.|+|||++
T Consensus        15 ~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~   94 (125)
T cd04029          15 QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYD   94 (125)
T ss_pred             CeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence            489999999999988765 4789999999992     246799999 99999999999999875   3568999999999


Q ss_pred             CC-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      .. ++++||++.++|.++......+.||+|.
T Consensus        95 ~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          95 RFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             CCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            87 8999999999999998888889999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.70  E-value=2.3e-16  Score=141.26  Aligned_cols=112  Identities=16%  Similarity=0.395  Sum_probs=96.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE  374 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~  374 (680)
                      +|+|+|++|++|++.+..+.                      +||||.+.++++..+|++ +++.||.|||+|.|.+.+.
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~----------------------~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~   58 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGL----------------------SDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD   58 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCC----------------------CCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC
Confidence            58999999999999886554                      399999999999999998 7999999999999999876


Q ss_pred             -CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEEEEE
Q 005736          375 -TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVL  453 (680)
Q Consensus       375 -~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~l~l  453 (680)
                       .+.|.++|||++.. ++|++||++.++|+++..+                      +..+.|++|++. .|++++.+.+
T Consensus        59 ~~~~l~v~v~d~~~~-~~~~~iG~~~~~l~~l~~~----------------------~~~~~w~~L~~~-~G~~~~~~~~  114 (116)
T cd08376          59 QSQILEIEVWDKDTG-KKDEFIGRCEIDLSALPRE----------------------QTHSLELELEDG-EGSLLLLLTL  114 (116)
T ss_pred             CCCEEEEEEEECCCC-CCCCeEEEEEEeHHHCCCC----------------------CceEEEEEccCC-CcEEEEEEEe
Confidence             67899999999986 5899999999999998643                      356789999865 5999877654

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.70  E-value=3.2e-16  Score=142.28  Aligned_cols=111  Identities=25%  Similarity=0.464  Sum_probs=95.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeeccCCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCceeE
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      .|+|+|++|+||+..   +.+||||++.+++ +..+|++.++.||.|||+|.|.+..+ ...+.|.|||++.. +|++||
T Consensus         5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG   81 (126)
T cd08400           5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIA   81 (126)
T ss_pred             EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEE
Confidence            699999999999874   4689999999976 45688866779999999999987654 36799999999888 899999


Q ss_pred             EEEEEcccccCCCeeeEEEeCCCCC------CeEEEEEEEEEE
Q 005736          566 SARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATR  602 (680)
Q Consensus       566 ~~~i~L~~l~~~~~~~~w~~L~~~~------~G~i~l~l~~~~  602 (680)
                      .+.++|+++..+...+.||+|.+..      .|+|+++++|.+
T Consensus        82 ~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          82 EVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             EEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            9999999998888889999997642      499999999973

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.70  E-value=2.8e-16  Score=141.79  Aligned_cols=113  Identities=15%  Similarity=0.333  Sum_probs=94.8

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeecc-CCCCCCccceeEEEEEecC
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDA-RPGSDPRWDSMFNMVLHEE  374 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v-~~t~nP~Wne~f~~~v~~~  374 (680)
                      |+|+|++|++|++.|..|.                      +||||++.+++ ...+|++ +++.||+|||+|.|.+.+.
T Consensus         2 L~v~v~~a~~L~~~d~~g~----------------------~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~   59 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGT----------------------SDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV   59 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCC----------------------CCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC
Confidence            7899999999999887664                      39999999986 6778888 7999999999999999877


Q ss_pred             CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc----eeeEEEE
Q 005736          375 TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN----SGELTVR  450 (680)
Q Consensus       375 ~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~----~G~l~~~  450 (680)
                      .+.|.|+|||+|.. .+|++||++.++++++..+                      ...+.|++|.+.+    .|+|++.
T Consensus        60 ~~~l~~~v~D~d~~-~~~~~iG~~~~~l~~l~~~----------------------~~~~~~~~L~~~~~~~~~G~l~l~  116 (121)
T cd04042          60 TQPLYIKVFDYDRG-LTDDFMGSAFVDLSTLELN----------------------KPTEVKLKLEDPNSDEDLGYISLV  116 (121)
T ss_pred             CCeEEEEEEeCCCC-CCCcceEEEEEEHHHcCCC----------------------CCeEEEEECCCCCCccCceEEEEE
Confidence            78899999999986 5999999999999998643                      2456677876433    5889888


Q ss_pred             EEEe
Q 005736          451 LVLK  454 (680)
Q Consensus       451 l~l~  454 (680)
                      +.+.
T Consensus       117 ~~~~  120 (121)
T cd04042         117 VTLT  120 (121)
T ss_pred             EEEC
Confidence            7653

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.70  E-value=2.7e-16  Score=142.59  Aligned_cols=100  Identities=23%  Similarity=0.444  Sum_probs=90.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--C-CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC-
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G-KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~-~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~-  559 (680)
                      +.|.|+|++|+||+..+..+.+||||++++  + ...++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.. 
T Consensus        16 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~   95 (124)
T cd08387          16 GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFS   95 (124)
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCC
Confidence            489999999999999998899999999999  3 467899999 999999999999998753   56899999999988 


Q ss_pred             CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          560 GDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      ++++||++.++|+++..+...+.||+|+
T Consensus        96 ~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          96 RDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCceeEEEEEecccccCCCCcceEEECc
Confidence            8999999999999998777889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.69  E-value=2.1e-16  Score=138.68  Aligned_cols=98  Identities=22%  Similarity=0.376  Sum_probs=89.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCCCCceeEEE
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSA  567 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~d~~iG~~  567 (680)
                      |.|+|++|++|+..+..+.+||||+++++++.++|+++ ++.||.|||.|.|.+.++ .+.|.|+|||++.  +++||++
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~   79 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL   79 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence            88999999999998888999999999999999999999 999999999999999874 6789999999886  8899999


Q ss_pred             EEEcccccCCC--eeeEEEeCCCC
Q 005736          568 RVNLEGLVEGS--VRDIWVPLEKV  589 (680)
Q Consensus       568 ~i~L~~l~~~~--~~~~w~~L~~~  589 (680)
                      .++|.++...+  ..+.||+|++.
T Consensus        80 ~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          80 TLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             EEEHHHhhccccceeeeeEecCCC
Confidence            99999988643  67899999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.69  E-value=3.2e-16  Score=140.92  Aligned_cols=111  Identities=20%  Similarity=0.366  Sum_probs=94.7

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccceeEEEEEe
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWDSMFNMVLH  372 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wne~f~~~v~  372 (680)
                      |.|+|++|++|++.+..+.                      +||||++.++   ...++|++ +++.||+|||+|.|.+.
T Consensus         2 L~V~vi~a~~L~~~~~~~~----------------------~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~   59 (119)
T cd04036           2 LTVRVLRATNITKGDLLST----------------------PDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQ   59 (119)
T ss_pred             eEEEEEEeeCCCccCCCCC----------------------CCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeC
Confidence            7899999999999886554                      3999999986   35778988 78999999999999987


Q ss_pred             cC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEEE
Q 005736          373 EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRL  451 (680)
Q Consensus       373 ~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~l  451 (680)
                      .. .+.|.|+|||+|..  +|++||++.+++.++..                      |...+.|+++.....|++++++
T Consensus        60 ~~~~~~l~v~v~d~d~~--~~~~iG~~~~~l~~l~~----------------------g~~~~~~~~L~~~~~g~l~~~~  115 (119)
T cd04036          60 SQVKNVLELTVMDEDYV--MDDHLGTVLFDVSKLKL----------------------GEKVRVTFSLNPQGKEELEVEF  115 (119)
T ss_pred             cccCCEEEEEEEECCCC--CCcccEEEEEEHHHCCC----------------------CCcEEEEEECCCCCCceEEEEE
Confidence            65 45799999999874  89999999999999853                      3467889999988889999888


Q ss_pred             EE
Q 005736          452 VL  453 (680)
Q Consensus       452 ~l  453 (680)
                      .+
T Consensus       116 ~~  117 (119)
T cd04036         116 LL  117 (119)
T ss_pred             Ee
Confidence            65

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.69  E-value=5e-16  Score=140.96  Aligned_cols=100  Identities=22%  Similarity=0.339  Sum_probs=87.3

Q ss_pred             cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~-~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~  557 (680)
                      +.|.|+|++|+||++++.. +.+||||++++.     ..+.||+++ ++.||+|||+|.|.+...   ...|.+.|||.+
T Consensus        15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~   94 (128)
T cd08392          15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSR   94 (128)
T ss_pred             CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCC
Confidence            4899999999999988864 899999999992     247799999 999999999999998652   579999999999


Q ss_pred             CC-CCceeEEEEEEcccccC---CCeeeEEEeCC
Q 005736          558 IF-GDENMGSARVNLEGLVE---GSVRDIWVPLE  587 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~---~~~~~~w~~L~  587 (680)
                      .. ++++||++.|+|.++..   ......||+|.
T Consensus        95 ~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          95 TLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             CCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            87 88999999999999864   34678999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.69  E-value=3.4e-16  Score=139.66  Aligned_cols=99  Identities=19%  Similarity=0.301  Sum_probs=87.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEE-C----C--EEEeeecc-CCCCCeeeeEEEEEeeCC----ceEEEEEEEEec
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQY-G----K--IVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEE  557 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l-~----~--~~~~T~~~-~t~nP~wne~f~f~v~~~----~~~L~i~V~d~~  557 (680)
                      |+|+|++|++|+..+ .|.+||||+|++ |    .  ++++|+++ ++.||+|||+|.|.+...    ...|.|.|||++
T Consensus         2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            899999999998877 489999999998 3    2  46789999 999999999999999742    457999999998


Q ss_pred             CC-CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736          558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  589 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  589 (680)
                      .. ++++||++.++|+++..++....|++|+..
T Consensus        81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          81 FARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            76 789999999999999988888999999763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.68  E-value=7.3e-16  Score=138.61  Aligned_cols=111  Identities=24%  Similarity=0.404  Sum_probs=99.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      |.|.|+|++|+||+..+..+.+||||++++++..++|+++ ++.||.|||+|.|.+.+....+.|+|||++.. ++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            5799999999999998888899999999999888999999 99999999999999877678899999999986 899999


Q ss_pred             EEEEEcccccCCCeeeEEEeCCCC-----CCeEEEEEEEE
Q 005736          566 SARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA  600 (680)
Q Consensus       566 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~~  600 (680)
                      ++.+++.++..+.  ..|++|.+.     .+|+|.+++++
T Consensus        81 ~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          81 KVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             EEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence            9999999986543  589999753     37999998865

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.68  E-value=3.5e-16  Score=140.53  Aligned_cols=112  Identities=18%  Similarity=0.319  Sum_probs=91.7

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-C-CCCCCccceeEEEEEe
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-R-PGSDPRWDSMFNMVLH  372 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~-~t~nP~Wne~f~~~v~  372 (680)
                      |.|+|+|++|++|++.+..+.+                      ||||++.+++...+|++ . ++.||+|||+|.|.+.
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~----------------------dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~   58 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQ----------------------DPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEIT   58 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCC----------------------CceEEEEECCCccccccccCCCCCCccCceEEEEec
Confidence            7899999999999998866543                      99999999998888886 4 5799999999999998


Q ss_pred             cC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC--ceeeEEE
Q 005736          373 EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV--NSGELTV  449 (680)
Q Consensus       373 ~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~--~~G~l~~  449 (680)
                      .. .+.|.|+|||++..  .|++||++.+++.++....                      ..+.|+++...  ..|+|++
T Consensus        59 ~~~~~~l~i~v~d~~~~--~~~~iG~~~~~l~~~~~~~----------------------~~~~w~~L~~~~~~~G~i~l  114 (118)
T cd08681          59 EDKKPILKVAVFDDDKR--KPDLIGDTEVDLSPALKEG----------------------EFDDWYELTLKGRYAGEVYL  114 (118)
T ss_pred             CCCCCEEEEEEEeCCCC--CCcceEEEEEecHHHhhcC----------------------CCCCcEEeccCCcEeeEEEE
Confidence            75 57899999998874  4999999999999985321                      23457777543  4689888


Q ss_pred             EEE
Q 005736          450 RLV  452 (680)
Q Consensus       450 ~l~  452 (680)
                      +++
T Consensus       115 ~l~  117 (118)
T cd08681         115 ELT  117 (118)
T ss_pred             EEE
Confidence            774

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.68  E-value=3.6e-16  Score=143.56  Aligned_cols=112  Identities=28%  Similarity=0.364  Sum_probs=97.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-------EEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-  559 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~-------~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-  559 (680)
                      .|+|+|++|++|+..+..+.+||||++++++.       .++|+++ ++.||.|||+|.|.+......|.|+|||++.. 
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            38999999999999988889999999999543       5799999 99999999999999887677899999999988 


Q ss_pred             CCceeEEEEEEcccccCCC------eeeEEEeCCCC-----CCeEEEEEEEE
Q 005736          560 GDENMGSARVNLEGLVEGS------VRDIWVPLEKV-----NTGELRLQIEA  600 (680)
Q Consensus       560 ~d~~iG~~~i~L~~l~~~~------~~~~w~~L~~~-----~~G~i~l~l~~  600 (680)
                      ++++||++.+++.++....      ....||+|++.     ..|+|++++.|
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence            8999999999999988543      35699999853     36999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.68  E-value=4.7e-16  Score=145.04  Aligned_cols=118  Identities=19%  Similarity=0.253  Sum_probs=95.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CC-CCCCccceeEEEEEec
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RP-GSDPRWDSMFNMVLHE  373 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~-t~nP~Wne~f~~~v~~  373 (680)
                      .|+|+|++|++|++.|..|.+                      ||||++.++++..+|++ .+ ++||+|||+|.|.+.+
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~s----------------------DPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~   58 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVP----------------------EVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAE   58 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCC----------------------CeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecC
Confidence            489999999999999877653                      99999999999999997 45 6999999999999987


Q ss_pred             C-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc---------
Q 005736          374 E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN---------  443 (680)
Q Consensus       374 ~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~---------  443 (680)
                      . .+.|.|+|+|++.. .+|++||++.++|.++.....                  .+...+.|++|.+..         
T Consensus        59 ~~~~~l~v~V~d~~~~-~~dd~lG~v~i~L~~l~~~~~------------------~~~~~~~W~~L~~~~~~~~~~k~~  119 (150)
T cd04019          59 PFEDHLILSVEDRVGP-NKDEPLGRAVIPLNDIERRVD------------------DRPVPSRWFSLERPGGAMEQKKKR  119 (150)
T ss_pred             ccCCeEEEEEEEecCC-CCCCeEEEEEEEHHHCcccCC------------------CCccCCceEECcCCCCcccccccC
Confidence            5 56899999999875 589999999999999863210                  022345677776532         


Q ss_pred             --eeeEEEEEEEe
Q 005736          444 --SGELTVRLVLK  454 (680)
Q Consensus       444 --~G~l~~~l~l~  454 (680)
                        .|+|++.+.+.
T Consensus       120 k~~g~l~l~i~~~  132 (150)
T cd04019         120 KFASRIHLRLCLD  132 (150)
T ss_pred             cccccEEEEEEec
Confidence              48899888764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.68  E-value=5.3e-16  Score=139.83  Aligned_cols=110  Identities=25%  Similarity=0.478  Sum_probs=96.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeEE
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMGS  566 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG~  566 (680)
                      |.|+|++|++|+..+..+.+||||++.+++. ..+|+++ ++.||.|||.|.|.+......|.|+|||++.. +|++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            7899999999999998899999999999764 5799999 99999999999999887678999999999988 8999999


Q ss_pred             EEEEcccccCC-CeeeEEEeCCCCC-----CeEEEEEEE
Q 005736          567 ARVNLEGLVEG-SVRDIWVPLEKVN-----TGELRLQIE  599 (680)
Q Consensus       567 ~~i~L~~l~~~-~~~~~w~~L~~~~-----~G~i~l~l~  599 (680)
                      +.++++++... ...+.|++|++..     .|+|++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            99999888753 3467999997633     699988764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.68  E-value=1.3e-16  Score=145.56  Aligned_cols=91  Identities=32%  Similarity=0.526  Sum_probs=86.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      |.|+|+|.+|.||..+|..+++||||.+.+++++.+|+++ +++||+|||.|.|.+.++...|.++|||+|.+ .|++||
T Consensus         6 GLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG   85 (168)
T KOG1030|consen    6 GLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMG   85 (168)
T ss_pred             eEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccc
Confidence            5899999999999999987999999999999999999999 99999999999999999999999999999999 999999


Q ss_pred             EEEEEcccccCCC
Q 005736          566 SARVNLEGLVEGS  578 (680)
Q Consensus       566 ~~~i~L~~l~~~~  578 (680)
                      .+.|+|..+....
T Consensus        86 ~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   86 EATIPLKPLLEAQ   98 (168)
T ss_pred             eeeeccHHHHHHh
Confidence            9999999887644

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.68  E-value=8.7e-16  Score=140.77  Aligned_cols=111  Identities=27%  Similarity=0.552  Sum_probs=98.3

Q ss_pred             cEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCE-EEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEE
Q 005736          488 RKINVTVVEGKDLMPKDKS----------GKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYN  555 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~----------~~~dpyv~v~l~~~-~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d  555 (680)
                      |.|+|+|++|++|...+..          +.+||||++.++++ ..+|+++ ++.||.|||+|.|.+. ....|.|.|||
T Consensus         4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d   82 (132)
T cd04014           4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFH   82 (132)
T ss_pred             eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEe
Confidence            5899999999999887752          57999999999774 4699999 9999999999999997 55789999999


Q ss_pred             ecCC-CCceeEEEEEEcccccC--CCeeeEEEeCCCCCCeEEEEEEEEE
Q 005736          556 EEIF-GDENMGSARVNLEGLVE--GSVRDIWVPLEKVNTGELRLQIEAT  601 (680)
Q Consensus       556 ~~~~-~d~~iG~~~i~L~~l~~--~~~~~~w~~L~~~~~G~i~l~l~~~  601 (680)
                      ++.. ++++||.+.++|+++..  +...+.|++|+.  +|+|+++++|.
T Consensus        83 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~l~l~~~~~  129 (132)
T cd04014          83 DAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP--QGKLHVKIELK  129 (132)
T ss_pred             CCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC--CcEEEEEEEEe
Confidence            9877 78999999999999886  567799999984  79999999887

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.68  E-value=9e-16  Score=139.13  Aligned_cols=100  Identities=29%  Similarity=0.463  Sum_probs=90.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~-  559 (680)
                      +.|.|+|++|+||+..+..+.+||||++++.   +..++|+++ ++.||.|||+|.|.+..   ....|.|+|||++.. 
T Consensus        16 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~   95 (124)
T cd08385          16 NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFS   95 (124)
T ss_pred             CEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCC
Confidence            4899999999999998888899999999983   367899999 99999999999999875   256899999999988 


Q ss_pred             CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          560 GDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      ++++||++.++|+++..+...+.|++|+
T Consensus        96 ~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          96 KHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCceeEEEEEecCcccCCCCcceEEEcc
Confidence            8899999999999998888889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.68  E-value=6e-16  Score=139.58  Aligned_cols=115  Identities=21%  Similarity=0.407  Sum_probs=95.7

Q ss_pred             eEEEEEEEecCCCCCCCCCC--CCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736          295 GIVYVRVISASKLSRSSLRG--SPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g--~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      |+|+|+|++|++|++.|...  ...                  ..+||||++.++++.++|++ +++.||.|||+|+|.+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~------------------g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v   62 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVK------------------GKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV   62 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCC------------------CCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEe
Confidence            78999999999999887421  000                  12499999999999999998 7999999999999999


Q ss_pred             ecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEE
Q 005736          372 HEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVR  450 (680)
Q Consensus       372 ~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~  450 (680)
                      .+. .+.|.|+|||++..  +|++||++.+++.++...                      ...+.|++|.+..+|+++++
T Consensus        63 ~~~~~~~l~i~v~d~~~~--~~~~iG~~~i~l~~l~~~----------------------~~~~~w~~L~~~~~G~~~~~  118 (121)
T cd08391          63 DEVPGQELEIELFDEDPD--KDDFLGRLSIDLGSVEKK----------------------GFIDEWLPLEDVKSGRLHLK  118 (121)
T ss_pred             CCCCCCEEEEEEEecCCC--CCCcEEEEEEEHHHhccc----------------------CccceEEECcCCCCceEEEE
Confidence            864 67899999999874  899999999999998642                      23568999988778999877


Q ss_pred             E
Q 005736          451 L  451 (680)
Q Consensus       451 l  451 (680)
                      +
T Consensus       119 ~  119 (121)
T cd08391         119 L  119 (121)
T ss_pred             E
Confidence            5

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.68  E-value=4.3e-16  Score=141.83  Aligned_cols=114  Identities=17%  Similarity=0.322  Sum_probs=93.1

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC-
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE-  374 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~-  374 (680)
                      |+|+|++|++|++.+..|.                      +||||++.++++.++|++ +++.||+|||+|.|.+.+. 
T Consensus         2 L~V~vi~A~~L~~~d~~g~----------------------~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~   59 (127)
T cd04022           2 LVVEVVDAQDLMPKDGQGS----------------------SSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPS   59 (127)
T ss_pred             eEEEEEEeeCCCCCCCCCC----------------------cCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHH
Confidence            8999999999999886554                      399999999999999998 7999999999999998753 


Q ss_pred             ---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC-----ceee
Q 005736          375 ---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV-----NSGE  446 (680)
Q Consensus       375 ---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~-----~~G~  446 (680)
                         ...|.|+|||.+..+.+|++||++.++++++...                     |.....|++|+..     .+|+
T Consensus        60 ~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~---------------------~~~~~~w~~L~~~~~~~~~~G~  118 (127)
T cd04022          60 RLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPP---------------------SEAVVQRYPLEKRGLFSRVRGE  118 (127)
T ss_pred             HccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCC---------------------CCccceEeEeeeCCCCCCccEE
Confidence               2579999999887522799999999999998632                     2234567777643     3799


Q ss_pred             EEEEEEE
Q 005736          447 LTVRLVL  453 (680)
Q Consensus       447 l~~~l~l  453 (680)
                      +++++.+
T Consensus       119 l~l~~~~  125 (127)
T cd04022         119 IGLKVYI  125 (127)
T ss_pred             EEEEEEE
Confidence            9888765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.68  E-value=5.9e-16  Score=140.10  Aligned_cols=100  Identities=25%  Similarity=0.518  Sum_probs=91.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCceeE
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      .|+|+|++|++|...+..+.+||||++++++..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. ++++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            389999999999988888899999999999999999999 999999999999998864 57899999999987 789999


Q ss_pred             EEEEEcccccCCCeeeEEEeCCC
Q 005736          566 SARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       566 ~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                      .+.++|+++........||.|.+
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~  103 (123)
T cd04025          81 KVVFSIQTLQQAKQEEGWFRLLP  103 (123)
T ss_pred             EEEEEHHHcccCCCCCCEEECCC
Confidence            99999999887666789999975

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.67  E-value=5.8e-16  Score=138.80  Aligned_cols=98  Identities=27%  Similarity=0.461  Sum_probs=86.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC--ceEEEEEEEEecCC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~~  559 (680)
                      +.|.|+|++|+||+..+ .+.+||||++++.     ....+|+++ ++.||.|||+|.|.+...  ...|.|+|||++..
T Consensus        12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~   90 (119)
T cd08685          12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK   90 (119)
T ss_pred             CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence            48999999999999888 7899999999993     247799999 999999999999998753  45789999999876


Q ss_pred             --CCceeEEEEEEcccccCCCeeeEEEeC
Q 005736          560 --GDENMGSARVNLEGLVEGSVRDIWVPL  586 (680)
Q Consensus       560 --~d~~iG~~~i~L~~l~~~~~~~~w~~L  586 (680)
                        ++++||.+.++|.++..+.....||.|
T Consensus        91 ~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          91 SRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             cCCCEEEEEEEecHHHhccCccccceEeC
Confidence              478999999999999877778999986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.67  E-value=7.6e-16  Score=140.41  Aligned_cols=115  Identities=16%  Similarity=0.327  Sum_probs=94.1

Q ss_pred             eEEEEEEEecCCCCCCCC--CCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736          295 GIVYVRVISASKLSRSSL--RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~--~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      |+|+|+|++|++|++.+.  .+.                      +||||.+.++.+..+|++ +++.||.|||+|.|.+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~----------------------~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~   58 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGK----------------------SDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPI   58 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCC----------------------cCCeEEEEECCEEEecceecCCcCCccCCcEEEEe
Confidence            799999999999998886  443                      499999999999999998 8999999999999999


Q ss_pred             ecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC-------c
Q 005736          372 HEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV-------N  443 (680)
Q Consensus       372 ~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~-------~  443 (680)
                      .+. .+.|.|+|||++.. .+|++||++.+++.++..+..                   +...+.|++|.+.       .
T Consensus        59 ~~~~~~~l~i~v~d~~~~-~~~~~lG~~~i~l~~~~~~~~-------------------~~~~~~w~~L~~~~~~~~~~~  118 (128)
T cd04024          59 FSAQNQLLKLILWDKDRF-AGKDYLGEFDIALEEVFADGK-------------------TGQSDKWITLKSTRPGKTSVV  118 (128)
T ss_pred             cCCCCCEEEEEEEECCCC-CCCCcceEEEEEHHHhhcccc-------------------cCccceeEEccCcccCccccc
Confidence            874 67899999999876 589999999999999863210                   1123567777654       3


Q ss_pred             eeeEEEEE
Q 005736          444 SGELTVRL  451 (680)
Q Consensus       444 ~G~l~~~l  451 (680)
                      +|+|++++
T Consensus       119 ~G~i~l~~  126 (128)
T cd04024         119 SGEIHLQF  126 (128)
T ss_pred             cceEEEEE
Confidence            68888765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.67  E-value=1.2e-15  Score=140.30  Aligned_cols=116  Identities=24%  Similarity=0.431  Sum_probs=97.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC----------CceEEEEEEEEe
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG----------GGECLMVKCYNE  556 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~----------~~~~L~i~V~d~  556 (680)
                      +.|+|+|++|++|+.++..+.+||||++.++++.++|+++ ++.||.|||.|.|.+..          ....|.|+|||+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            3799999999999999989999999999999999999999 99999999999997532          125799999999


Q ss_pred             cCC-CCceeEEEEE-Eccccc---CCCeeeEEEeCCCC--CCeEEEEEEEEEEe
Q 005736          557 EIF-GDENMGSARV-NLEGLV---EGSVRDIWVPLEKV--NTGELRLQIEATRV  603 (680)
Q Consensus       557 ~~~-~d~~iG~~~i-~L~~l~---~~~~~~~w~~L~~~--~~G~i~l~l~~~~~  603 (680)
                      +.. +|++||++.+ ++..+.   ......+|++|...  ..|+|+++++++++
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~  134 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV  134 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence            987 8899999997 444443   24567899999753  46999999998753

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.67  E-value=1e-15  Score=139.00  Aligned_cols=99  Identities=27%  Similarity=0.471  Sum_probs=85.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d~~  557 (680)
                      +.|.|+|++|+||+..+..+.+||||++++..     ..++|+++ ++.||.|||+|.|.+..    ....|.|+|||++
T Consensus        16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~   95 (125)
T cd04031          16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYD   95 (125)
T ss_pred             CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCC
Confidence            48999999999999988888999999999943     67899999 99999999999998644    3568999999999


Q ss_pred             CC-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      .. ++++||++.++|.+.. ......||+|+
T Consensus        96 ~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~  125 (125)
T cd04031          96 RDGENDFLGEVVIDLADAL-LDDEPHWYPLQ  125 (125)
T ss_pred             CCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence            87 8899999999999833 33446899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.66  E-value=2.8e-15  Score=136.33  Aligned_cols=100  Identities=23%  Similarity=0.287  Sum_probs=85.9

Q ss_pred             cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CEEEeeecc-CCCCCeeeeEEEEE-eeC---CceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~-~~~dpyv~v~l~---~~~~~T~~~-~t~nP~wne~f~f~-v~~---~~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|+||+..+.. +.+||||++++.   +++.||+++ ++.||.|||+|.|. +..   ....|.++|||++.
T Consensus        16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~   95 (128)
T cd08388          16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR   95 (128)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC
Confidence            4899999999999988875 889999999983   467899999 99999999999994 432   24579999999988


Q ss_pred             C-CCceeEEEEEEcccccCC--CeeeEEEeCC
Q 005736          559 F-GDENMGSARVNLEGLVEG--SVRDIWVPLE  587 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~--~~~~~w~~L~  587 (680)
                      . ++++||++.++|+++...  .....|.+|+
T Consensus        96 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          96 YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            8 899999999999998643  5678898886

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.66  E-value=1.8e-15  Score=136.79  Aligned_cols=100  Identities=28%  Similarity=0.419  Sum_probs=88.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEE-eeC---CceEEEEEEEEecCC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~-v~~---~~~~L~i~V~d~~~~  559 (680)
                      +.|.|+|++|+||+..+..+.+||||++.+   .++..+|+++ + .||+|||+|.|. +..   ....|.++|||++..
T Consensus        16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~   94 (124)
T cd08389          16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM   94 (124)
T ss_pred             CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence            489999999999999988889999999887   3478899988 7 999999999998 553   367899999999988


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                       ++++||++.++|+++..+.....|++|++
T Consensus        95 ~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          95 RKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             ccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence             89999999999999988888899999973

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.65  E-value=1.3e-15  Score=138.09  Aligned_cols=115  Identities=23%  Similarity=0.325  Sum_probs=98.1

Q ss_pred             cEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCc
Q 005736          488 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYGK--IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDE  562 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~-~~~~~dpyv~v~l~~--~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~  562 (680)
                      |.|.|+|++|++|+..+ ..+.+||||++.+++  ..++|+++ ++.||.|||.|.|.+....+.|.|+|||++.. +|+
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~   81 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK   81 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence            58999999999998655 346799999999976  88999999 99999999999999886688999999999988 899


Q ss_pred             eeEEEEEEcccccCCCeee-EEEeCC--CCCCeEEEEEEEEEE
Q 005736          563 NMGSARVNLEGLVEGSVRD-IWVPLE--KVNTGELRLQIEATR  602 (680)
Q Consensus       563 ~iG~~~i~L~~l~~~~~~~-~w~~L~--~~~~G~i~l~l~~~~  602 (680)
                      +||++.++|.++....... .|+.+.  ++..|+|+++++|.|
T Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence            9999999999998766554 444443  345799999999973

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.65  E-value=8.6e-16  Score=135.12  Aligned_cols=95  Identities=16%  Similarity=0.226  Sum_probs=80.3

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE  373 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~  373 (680)
                      |+|.|+|++|++|++.+..+...                  ..+||||++.+++...+|++ +++.||+|||+|.|.+.+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~------------------~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~   62 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTG------------------FDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYP   62 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCC------------------CccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeC
Confidence            89999999999999987422110                  01499999999998999998 899999999999999876


Q ss_pred             C--CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          374 E--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       374 ~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      .  ...|.|+|||+|.. ++|++||++.++|++|..+
T Consensus        63 ~~~~~~L~~~V~D~d~~-~~dd~IG~~~l~L~~l~~~   98 (108)
T cd04039          63 HEKNFDIQFKVLDKDKF-SFNDYVATGSLSVQELLNA   98 (108)
T ss_pred             ccCCCEEEEEEEECCCC-CCCcceEEEEEEHHHHHhh
Confidence            4  34799999999986 6999999999999999754

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.65  E-value=1e-15  Score=142.03  Aligned_cols=98  Identities=28%  Similarity=0.434  Sum_probs=85.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEEee---------------C-Cce
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEI---------------G-GGE  547 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~v~---------------~-~~~  547 (680)
                      |.|+|++|+||..  ..|.+||||+|++..     +..+|+++ ++.||+|||+|.|.+.               + ...
T Consensus         2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            8999999999987  468999999999954     67899999 9999999999999984               1 235


Q ss_pred             EEEEEEEEecCC-CCceeEEEEEEcccccCC-CeeeEEEeCCCC
Q 005736          548 CLMVKCYNEEIF-GDENMGSARVNLEGLVEG-SVRDIWVPLEKV  589 (680)
Q Consensus       548 ~L~i~V~d~~~~-~d~~iG~~~i~L~~l~~~-~~~~~w~~L~~~  589 (680)
                      .|.|.|||++.. +|++||++.|+|.++..+ .....||+|++.
T Consensus        80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~  123 (148)
T cd04010          80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR  123 (148)
T ss_pred             EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence            799999999987 899999999999999876 567899999864

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.65  E-value=1.2e-15  Score=133.91  Aligned_cols=101  Identities=13%  Similarity=0.295  Sum_probs=85.6

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE  374 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~  374 (680)
                      +|.|+|++|++|+..+..+.                      +||||+++++++.++|++ +++.||+|||+|.|.+.+.
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~----------------------~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~   58 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKE----------------------PSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP   58 (105)
T ss_pred             CEEEEEeeecCCCCcccCCC----------------------CCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC
Confidence            48999999999999875554                      499999999999999998 7899999999999999985


Q ss_pred             -CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC
Q 005736          375 -TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV  442 (680)
Q Consensus       375 -~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~  442 (680)
                       .+.|.|+|+|++.    |++||++.++|.++..++                    +...+.|++|++.
T Consensus        59 ~~~~l~v~v~d~~~----~~~iG~~~i~l~~l~~~~--------------------~~~~~~w~~L~~~  103 (105)
T cd04050          59 ENQELEIEVKDDKT----GKSLGSLTLPLSELLKEP--------------------DLTLDQPFPLDNS  103 (105)
T ss_pred             CCCEEEEEEEECCC----CCccEEEEEEHHHhhccc--------------------cceeeeeEecCCC
Confidence             6789999999764    799999999999986432                    2356778888753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.64  E-value=1.9e-15  Score=134.32  Aligned_cols=97  Identities=20%  Similarity=0.299  Sum_probs=85.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeEE
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS  566 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~  566 (680)
                      +.|.|+|++|++|+..+   ..||||++.+++++.+|++. + .||.|||.|.|.+.+....|.|+|||++...|++||+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~   77 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGT   77 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEE
Confidence            47999999999997544   46999999999999999999 6 6999999999999877667999999998779999999


Q ss_pred             EEEEcccccCCCe--eeEEEeCCC
Q 005736          567 ARVNLEGLVEGSV--RDIWVPLEK  588 (680)
Q Consensus       567 ~~i~L~~l~~~~~--~~~w~~L~~  588 (680)
                      +.++|+++..+..  ..+||+|+.
T Consensus        78 v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          78 VWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             EEEEhHHcccCCCCCCCccEecCh
Confidence            9999999885443  489999985

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.64  E-value=2e-15  Score=134.68  Aligned_cols=88  Identities=18%  Similarity=0.324  Sum_probs=73.3

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE-c----c--eeeeecc-CCCCCCccceeEE
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-E----E--LTRRTDA-RPGSDPRWDSMFN  368 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~-~----~--~~~~T~v-~~t~nP~Wne~f~  368 (680)
                      |+|+|++|++|+..+. |.                      +||||+|.+ |    .  +.++|++ ++|+||+|||+|.
T Consensus         2 L~V~Vi~A~~L~~~d~-g~----------------------~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~   58 (120)
T cd08395           2 VTVKVVAANDLKWQTT-GM----------------------FRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQ   58 (120)
T ss_pred             EEEEEEECcCCCcccC-CC----------------------CCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEE
Confidence            8999999999998873 54                      399999997 3    2  3467888 7899999999999


Q ss_pred             EEEecC----CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          369 MVLHEE----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       369 ~~v~~~----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      |.+...    ...|.|.|||+|.. ++|++||++.+++.++..+
T Consensus        59 F~v~~~~~~~~~~L~~~V~D~d~~-~~dd~IG~~~l~l~~~~~~  101 (120)
T cd08395          59 FILGNEDDPESYELHICVKDYCFA-RDDRLVGVTVLQLRDIAQA  101 (120)
T ss_pred             EEeeCcCCCceeEEEEEEEEeccc-CCCCEEEEEEEEHHHCcCC
Confidence            999743    24699999999865 6899999999999999643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.64  E-value=3.9e-15  Score=135.12  Aligned_cols=100  Identities=21%  Similarity=0.415  Sum_probs=89.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEEecCC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d~~~~  559 (680)
                      +.|.|+|++|+||+..+..+.+||||++++   +++..+|+++ ++.||.|||+|.|.+..    ....|.++|||++..
T Consensus        16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~   95 (125)
T cd08386          16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF   95 (125)
T ss_pred             CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence            489999999999999888889999999999   3578899999 99999999999998533    246799999999988


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                       ++++||++.+++.++..+.....|++|.
T Consensus        96 ~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          96 SRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             cCCcEeeEEEEecccccCCCCcceEEecC
Confidence             8899999999999998888889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.64  E-value=2.4e-15  Score=142.30  Aligned_cols=103  Identities=24%  Similarity=0.390  Sum_probs=90.9

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEE
Q 005736          486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYN  555 (680)
Q Consensus       486 ~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d  555 (680)
                      ..+.|.|+|++|+||+..+..+.+||||++++     +...++|+++ ++.||.|||+|.|.+..    ....|.|+|||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            45699999999999999988899999999998     2468899999 99999999999998543    24589999999


Q ss_pred             ecCC-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          556 EEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       556 ~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                      ++.. ++++||++.+++.++......+.|+.+.+
T Consensus       105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020         105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             CCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            9988 79999999999999887777789998875

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.64  E-value=4.9e-15  Score=134.55  Aligned_cols=112  Identities=18%  Similarity=0.253  Sum_probs=96.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeEE
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS  566 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~  566 (680)
                      .+|+|+|++|++|...+..+.+||||++.++++.++|+++ ++.||.|||.|.|.+.+....|.|+|||++..+|++||.
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~   82 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQ   82 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEE
Confidence            4899999999999988888999999999999999999999 999999999999998877889999999998778899999


Q ss_pred             EEEEcccccCCCeeeEEEeCCC-------CCCeEEEEEEEEE
Q 005736          567 ARVNLEGLVEGSVRDIWVPLEK-------VNTGELRLQIEAT  601 (680)
Q Consensus       567 ~~i~L~~l~~~~~~~~w~~L~~-------~~~G~i~l~l~~~  601 (680)
                      +.+++.++.  ....+|++|..       ...|+|.+++...
T Consensus        83 ~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~  122 (126)
T cd04046          83 ATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS  122 (126)
T ss_pred             EEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence            999998754  33447778852       2357777777554

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.64  E-value=4.2e-15  Score=135.31  Aligned_cols=100  Identities=27%  Similarity=0.337  Sum_probs=89.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|+||+..+..+.+||||++++.     ...++|+++ ++.||.|||+|.|.+...   ...|.|.|||++.
T Consensus        16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~   95 (127)
T cd04030          16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS   95 (127)
T ss_pred             CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc
Confidence            4899999999999999988999999999993     468899999 999999999999998652   4689999999986


Q ss_pred             C---CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          559 F---GDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       559 ~---~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      .   ++++||++.++|.++..+.....||+|.
T Consensus        96 ~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          96 FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             ccCCCCceEEEEEEecccccccCCccceEECc
Confidence            3   7899999999999998777889999984

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.64  E-value=1.3e-15  Score=137.09  Aligned_cols=100  Identities=17%  Similarity=0.262  Sum_probs=87.9

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE--C----CEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEe
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNE  556 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~----~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~  556 (680)
                      .+.|.|+|++|+||...+..+.+||||++++  +    +..++|+++ ++.||+|||+|.|.+..   ....|.|+|||+
T Consensus        13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~   92 (124)
T cd08680          13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSV   92 (124)
T ss_pred             CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeC
Confidence            3489999999999999888889999999998  2    258899999 99999999999999875   367999999999


Q ss_pred             cCC-CCceeEEEEEEcccccCC-CeeeEEEeC
Q 005736          557 EIF-GDENMGSARVNLEGLVEG-SVRDIWVPL  586 (680)
Q Consensus       557 ~~~-~d~~iG~~~i~L~~l~~~-~~~~~w~~L  586 (680)
                      +.. ++++||.+.++|.++... .....||+|
T Consensus        93 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          93 GPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             CCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            987 899999999999999654 457789976

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.64  E-value=2.8e-15  Score=134.97  Aligned_cols=110  Identities=14%  Similarity=0.174  Sum_probs=90.2

Q ss_pred             EEEEEEecCCCCCCCC-CCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEEec
Q 005736          297 VYVRVISASKLSRSSL-RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVLHE  373 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~-~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v~~  373 (680)
                      |.|+|.+|++|++.+. .|.                      +||||.+.++++ ..+|++ ++|+||.|||+|+|.+.+
T Consensus         2 l~v~v~~a~~L~~~~~~~g~----------------------sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~   59 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKM----------------------RDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR   59 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCC----------------------cCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCC
Confidence            7899999999998752 232                      399999999865 578888 799999999999999987


Q ss_pred             CCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC-----ceeeEE
Q 005736          374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV-----NSGELT  448 (680)
Q Consensus       374 ~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~-----~~G~l~  448 (680)
                      ....|.|.|||+|.. .+|++||++.++++++...                      ...+.|++++..     .+|+++
T Consensus        60 ~~~~l~~~v~d~~~~-~~~~~iG~~~i~l~~l~~~----------------------~~~~~w~~L~~~~~~~~~~G~i~  116 (121)
T cd08401          60 TFRHLSFYIYDRDVL-RRDSVIGKVAIKKEDLHKY----------------------YGKDTWFPLQPVDADSEVQGKVH  116 (121)
T ss_pred             CCCEEEEEEEECCCC-CCCceEEEEEEEHHHccCC----------------------CCcEeeEEEEccCCCCcccEEEE
Confidence            667899999999986 6899999999999998632                      245678888643     268888


Q ss_pred             EEE
Q 005736          449 VRL  451 (680)
Q Consensus       449 ~~l  451 (680)
                      +++
T Consensus       117 l~~  119 (121)
T cd08401         117 LEL  119 (121)
T ss_pred             EEE
Confidence            775

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.64  E-value=3e-15  Score=136.16  Aligned_cols=108  Identities=37%  Similarity=0.649  Sum_probs=93.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC--------
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF--------  559 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~--------  559 (680)
                      .|+|+|++|++|+..+..+.+||||++++++..++|+++ ++.||.|||+|.|.+..+...|.|+|||++..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            689999999999999888899999999999899999999 99999999999999876667899999999841        


Q ss_pred             ----CCceeEEEEEEcccccCCCeeeEEEeCCCC-----CCeEEEEEE
Q 005736          560 ----GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQI  598 (680)
Q Consensus       560 ----~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~l  598 (680)
                          .+++||++.+++.++..  ....||+|++.     .+|+|++++
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             ccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence                58899999999998753  35699999863     258888763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.63  E-value=7.9e-15  Score=133.18  Aligned_cols=90  Identities=16%  Similarity=0.188  Sum_probs=80.5

Q ss_pred             cCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736          293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       293 ~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      ++++|+|+|++|++|++.|..|.+                      ||||++.++++..+|++ +++.||+|||.|.|.+
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~----------------------dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~   58 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGA----------------------DPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYR   58 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCc----------------------CccEEEEECCEEEEeCccCCCCCCcccceEEEEe
Confidence            358999999999999998866643                      99999999999999998 7999999999999998


Q ss_pred             ecCCCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          372 HEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       372 ~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      .+....|.|+|||++..  +|++||++.+++.++.
T Consensus        59 ~~~~~~l~i~V~d~~~~--~d~~lG~~~~~l~~~~   91 (126)
T cd04046          59 KKPRSPIKIQVWNSNLL--CDEFLGQATLSADPND   91 (126)
T ss_pred             cCCCCEEEEEEEECCCC--CCCceEEEEEecccCC
Confidence            88778899999998874  6999999999998764

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.63  E-value=2.8e-15  Score=134.89  Aligned_cols=113  Identities=23%  Similarity=0.347  Sum_probs=91.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE  374 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~  374 (680)
                      +|.|+|++|++|+..    .                      +||||++.+++...+|++ +++.||+|||+|.|.+.+.
T Consensus         1 ~L~V~Vi~a~~L~~~----~----------------------~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~   54 (121)
T cd08378           1 YLYVRVVKARGLPAN----S----------------------NDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL   54 (121)
T ss_pred             CEEEEEEEecCCCcc----c----------------------CCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC
Confidence            489999999999877    2                      299999999999999998 7899999999999998774


Q ss_pred             -CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc----eeeEEE
Q 005736          375 -TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN----SGELTV  449 (680)
Q Consensus       375 -~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~----~G~l~~  449 (680)
                       .+.|.++|||+|..  +|++||++.++++++.....      .           .+.....|++|.+..    +|+|++
T Consensus        55 ~~~~L~~~v~d~d~~--~~~~lG~~~i~l~~l~~~~~------~-----------~~~~~~~W~~L~~~~~~~~~G~i~l  115 (121)
T cd08378          55 QGSTLEVSVWDKDKA--KDDFLGGVCFDLSEVPTRVP------P-----------DSPLAPQWYRLEDKKGGRVGGELML  115 (121)
T ss_pred             cCCEEEEEEEeCCCC--cCceeeeEEEEhHhCcCCCC------C-----------CCCCCcceEEccCCCCCccceEEEE
Confidence             67899999999874  89999999999999864211      0           012345688886644    589998


Q ss_pred             EEEE
Q 005736          450 RLVL  453 (680)
Q Consensus       450 ~l~l  453 (680)
                      ++.+
T Consensus       116 ~~~~  119 (121)
T cd08378         116 AVWF  119 (121)
T ss_pred             EEEe
Confidence            8865

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.63  E-value=4.5e-15  Score=134.29  Aligned_cols=99  Identities=21%  Similarity=0.393  Sum_probs=87.7

Q ss_pred             cEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~-~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~  557 (680)
                      +.|.|+|++|+||+..+ ..+.+||||++++.     ....+|+++ ++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~   93 (123)
T cd08521          14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHD   93 (123)
T ss_pred             CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCC
Confidence            48999999999999888 67899999999982     156899999 999999999999998752   568999999999


Q ss_pred             CC-CCceeEEEEEEcccccCCCeeeEEEeC
Q 005736          558 IF-GDENMGSARVNLEGLVEGSVRDIWVPL  586 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L  586 (680)
                      .. ++++||++.++|+++..+...+.||+|
T Consensus        94 ~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          94 RFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             CCcCCceeeEEEEecccccccCCCccEEEC
Confidence            87 889999999999999877778899987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.63  E-value=5.4e-15  Score=132.97  Aligned_cols=90  Identities=20%  Similarity=0.410  Sum_probs=80.5

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE  373 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~  373 (680)
                      |.|+|+|++|++|+..+..+.                      +||||.+.++....+|++ +++.||.|||+|.|.+.+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~----------------------~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~   58 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGK----------------------SDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD   58 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCC----------------------CCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC
Confidence            789999999999999886554                      399999999988889998 789999999999999987


Q ss_pred             CCCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       374 ~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      ..+.+.|+|||++.. .++++||++.+++.++..
T Consensus        59 ~~~~l~~~v~d~~~~-~~~~~iG~~~~~l~~~~~   91 (119)
T cd08377          59 IHDVLEVTVYDEDKD-KKPEFLGKVAIPLLSIKN   91 (119)
T ss_pred             cCCEEEEEEEECCCC-CCCceeeEEEEEHHHCCC
Confidence            778899999999875 589999999999999853

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.63  E-value=6e-15  Score=133.88  Aligned_cols=112  Identities=20%  Similarity=0.296  Sum_probs=90.6

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeeccCCCCCCccceeEEEEEec
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDARPGSDPRWDSMFNMVLHE  373 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v~~t~nP~Wne~f~~~v~~  373 (680)
                      ..|+|+|++|++|++.+   .                      +||||.+.+++. ..+|+++++.||.|||+|.|.+..
T Consensus         4 ~~L~V~Vi~A~~L~~~~---~----------------------~DPYv~v~l~~~~~~kT~v~~~~nP~WnE~f~f~~~~   58 (126)
T cd08400           4 RSLQLNVLEAHKLPVKH---V----------------------PHPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLP   58 (126)
T ss_pred             eEEEEEEEEeeCCCCCC---C----------------------CCeeEEEEECCEeEEEeecCCCCCCccCCEEEEecCC
Confidence            57999999999998743   2                      399999999874 468888778999999999998665


Q ss_pred             CC-CeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC------ceee
Q 005736          374 ET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV------NSGE  446 (680)
Q Consensus       374 ~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~------~~G~  446 (680)
                      .. +.++|.|||.+.. ++|++||++.++|.++..+                      ...+.|+++++.      ..|+
T Consensus        59 ~~~~~l~v~v~d~~~~-~~d~~iG~v~i~l~~l~~~----------------------~~~~~W~~L~~~~~~~~~~~G~  115 (126)
T cd08400          59 PDVNSFTISLSNKAKR-SKDSEIAEVTVQLSKLQNG----------------------QETDEWYPLSSASPLKGGEWGS  115 (126)
T ss_pred             CCcCEEEEEEEECCCC-CCCCeEEEEEEEHhHccCC----------------------CcccEeEEcccCCCCCCCcCcE
Confidence            43 5799999999886 6999999999999998642                      345678888643      2499


Q ss_pred             EEEEEEEe
Q 005736          447 LTVRLVLK  454 (680)
Q Consensus       447 l~~~l~l~  454 (680)
                      |++.+.+.
T Consensus       116 i~l~l~~~  123 (126)
T cd08400         116 LRIRARYS  123 (126)
T ss_pred             EEEEEEEE
Confidence            99988764

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.63  E-value=4.9e-15  Score=134.20  Aligned_cols=93  Identities=18%  Similarity=0.344  Sum_probs=80.3

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc--eeeeecc-CCCCCCccceeEEEE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE--LTRRTDA-RPGSDPRWDSMFNMV  370 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~--~~~~T~v-~~t~nP~Wne~f~~~  370 (680)
                      .|+|+|+|.+|++|+..+..+.                     .+||||.+.++.  ...+|++ +++.||.|||.|.|.
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~---------------------~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~   59 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGG---------------------TVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYIL   59 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCC---------------------CCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEE
Confidence            4999999999999997653221                     139999999987  7889988 789999999999999


Q ss_pred             EecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          371 LHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       371 v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      +.+..+.|.|+|||++.. .+|++||++.++++++...
T Consensus        60 v~~~~~~l~~~v~d~~~~-~~d~~iG~~~~~l~~l~~~   96 (124)
T cd04044          60 VNSLTEPLNLTVYDFNDK-RKDKLIGTAEFDLSSLLQN   96 (124)
T ss_pred             eCCCCCEEEEEEEecCCC-CCCceeEEEEEEHHHhccC
Confidence            986678999999999886 5899999999999999754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.63  E-value=6.6e-15  Score=133.21  Aligned_cols=101  Identities=19%  Similarity=0.371  Sum_probs=89.9

Q ss_pred             cEEEEEEEEeecCCCCC-CCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC
Q 005736          488 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~-~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~  559 (680)
                      +.|.|+|++|+||+..+ ..+.+||||++++   +....+|+++ ++.||.|||+|.|.+...   ...|.|+|||++..
T Consensus        14 ~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~   93 (123)
T cd08390          14 EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRF   93 (123)
T ss_pred             CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcC
Confidence            48999999999999888 5788999999998   3467899999 999999999999998753   46899999999987


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                       ++++||++.++|+++........|++|+.
T Consensus        94 ~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          94 SRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             CCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence             78999999999999998888889999973

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.63  E-value=7e-15  Score=133.65  Aligned_cols=111  Identities=25%  Similarity=0.484  Sum_probs=97.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCc
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDE  562 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~  562 (680)
                      .|+|+|++|++|+..+..+.+||||++.+++   ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. +++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            6899999999999988889999999999853   57899999 999999999999999874 67899999999987 899


Q ss_pred             eeEEEEEEcccccC---CCeeeEEEeCCCCCCeEEEEEEEEE
Q 005736          563 NMGSARVNLEGLVE---GSVRDIWVPLEKVNTGELRLQIEAT  601 (680)
Q Consensus       563 ~iG~~~i~L~~l~~---~~~~~~w~~L~~~~~G~i~l~l~~~  601 (680)
                      +||++.++|.++..   +...+.|++|.+  +|++++.+.+.
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~  121 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSME  121 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEe
Confidence            99999999987543   346789999986  79999998775

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.62  E-value=3.3e-15  Score=135.06  Aligned_cols=108  Identities=17%  Similarity=0.330  Sum_probs=93.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-C--Ccee
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G--DENM  564 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~--d~~i  564 (680)
                      |+|+|++|++|+..+..+.+||||+++++ .+.++|+++ ++.||.|||+|.|.+.. ...|.|+|||++.. .  |++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            79999999999998888999999999995 788999999 99999999999999975 77899999999877 3  5799


Q ss_pred             EEEEEEcccccCCC-eeeEEEeCCCCC-------CeEEEEEE
Q 005736          565 GSARVNLEGLVEGS-VRDIWVPLEKVN-------TGELRLQI  598 (680)
Q Consensus       565 G~~~i~L~~l~~~~-~~~~w~~L~~~~-------~G~i~l~l  598 (680)
                      |++.+++.++.... ....|++|...+       .|+|.+++
T Consensus        81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence            99999999987543 347899996533       47777664

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.62  E-value=2.4e-15  Score=133.22  Aligned_cols=99  Identities=24%  Similarity=0.478  Sum_probs=88.6

Q ss_pred             EEEEEEEeecCCCCCC-CCCCCcEEEEEECCEEEeeecc-CCCCCee-eeEEEEEeeCC---ceEEEEEEEEecCC-CCc
Q 005736          490 INVTVVEGKDLMPKDK-SGKCDPYVKLQYGKIVQRTRTA-HSPNHVW-NQKFELDEIGG---GECLMVKCYNEEIF-GDE  562 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~T~~~-~t~nP~w-ne~f~f~v~~~---~~~L~i~V~d~~~~-~d~  562 (680)
                      |.|+|++|++|+..+. .+.+||||+++++++.++|+++ ++.||.| ||+|.|.+...   ...|.|+|||++.. +++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            5799999999998874 6889999999999999999999 9999999 99999998763   46899999999987 889


Q ss_pred             eeEEEEEEcccccC---CCeeeEEEeCCC
Q 005736          563 NMGSARVNLEGLVE---GSVRDIWVPLEK  588 (680)
Q Consensus       563 ~iG~~~i~L~~l~~---~~~~~~w~~L~~  588 (680)
                      +||++.+++.++..   +...+.||+|.+
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            99999999999886   446789999865

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.62  E-value=6.2e-15  Score=138.92  Aligned_cols=136  Identities=16%  Similarity=0.244  Sum_probs=93.8

Q ss_pred             CeEEEEEEEecCCCCCCCCCCC-Ccc---cccccCCC----CccccccCCCCCCeEEEEEEcce-eeeecc-CCCCCCcc
Q 005736          294 GGIVYVRVISASKLSRSSLRGS-PSR---RQQNYSAD----SSLEEHYEDKDLTTFVEIELEEL-TRRTDA-RPGSDPRW  363 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~-~~~---~~~~~~s~----~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v-~~t~nP~W  363 (680)
                      .|.|+|+|.+|++|+++|.... ..+   +-.....+    .......+...+||||++.+++. ..+|++ +++.||+|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            3999999999999999984211 000   00000000    00000011224599999999964 468998 78999999


Q ss_pred             ceeEEEEEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc
Q 005736          364 DSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN  443 (680)
Q Consensus       364 ne~f~~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~  443 (680)
                      ||+|.|.+.+..+.|.|.|+|.|..  .+++||++.++++++..+                      ...+.|+++.+.+
T Consensus        86 nE~F~~~~~~~~~~l~~~V~d~d~~--~~~~IG~~~i~l~~l~~g----------------------~~~~~w~~L~~~~  141 (158)
T cd04015          86 NESFHIYCAHYASHVEFTVKDNDVV--GAQLIGRAYIPVEDLLSG----------------------EPVEGWLPILDSN  141 (158)
T ss_pred             ceEEEEEccCCCCEEEEEEEeCCCc--CCcEEEEEEEEhHHccCC----------------------CCcceEEECcCCC
Confidence            9999999887777899999998874  578999999999998632                      3456788875431


Q ss_pred             ------eeeEEEEEEE
Q 005736          444 ------SGELTVRLVL  453 (680)
Q Consensus       444 ------~G~l~~~l~l  453 (680)
                            .|+|++++.+
T Consensus       142 ~~~~~~~~~l~v~~~f  157 (158)
T cd04015         142 GKPPKPGAKIRVSLQF  157 (158)
T ss_pred             CCCCCCCCEEEEEEEE
Confidence                  3678777643

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.62  E-value=5.3e-15  Score=134.41  Aligned_cols=111  Identities=23%  Similarity=0.395  Sum_probs=89.6

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc--eeeeecc-CCCCCCccceeEEEEEec
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE--LTRRTDA-RPGSDPRWDSMFNMVLHE  373 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~--~~~~T~v-~~t~nP~Wne~f~~~v~~  373 (680)
                      |.|+|++|++|+.  ..|.                      +||||.+.++.  +.++|++ +++.||+|||.|.|.+..
T Consensus         1 l~v~v~~A~~L~~--~~g~----------------------~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~   56 (126)
T cd08678           1 LLVKNIKANGLSE--AAGS----------------------SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP   56 (126)
T ss_pred             CEEEEEEecCCCC--CCCC----------------------cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC
Confidence            6799999999987  3343                      39999999973  5689998 789999999999999976


Q ss_pred             CCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC------ceeeE
Q 005736          374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV------NSGEL  447 (680)
Q Consensus       374 ~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~------~~G~l  447 (680)
                      ..+.|.|+|||+|.. ++|++||++.+++.++....                      ....|+++...      ..|+|
T Consensus        57 ~~~~l~~~v~d~~~~-~~~~~lG~~~i~l~~l~~~~----------------------~~~~~~~L~~~~~~~~~~~G~l  113 (126)
T cd08678          57 NSKELLFEVYDNGKK-SDSKFLGLAIVPFDELRKNP----------------------SGRQIFPLQGRPYEGDSVSGSI  113 (126)
T ss_pred             CCCEEEEEEEECCCC-CCCceEEEEEEeHHHhccCC----------------------ceeEEEEecCCCCCCCCcceEE
Confidence            677899999999986 58999999999999987543                      22346666533      36999


Q ss_pred             EEEEEEe
Q 005736          448 TVRLVLK  454 (680)
Q Consensus       448 ~~~l~l~  454 (680)
                      .+++.+.
T Consensus       114 ~l~~~~~  120 (126)
T cd08678         114 TVEFLFM  120 (126)
T ss_pred             EEEEEEe
Confidence            9888653

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.62  E-value=8.5e-15  Score=133.29  Aligned_cols=109  Identities=28%  Similarity=0.391  Sum_probs=97.2

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-CCceeEEEE
Q 005736          494 VVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-GDENMGSAR  568 (680)
Q Consensus       494 I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~-~d~~iG~~~  568 (680)
                      |++|++|+.  ..+.+||||++++++..++|+++ ++.||.|||+|.|.+..   ....|.|+|||++.. ++++||++.
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~   79 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT   79 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence            688999987  56889999999999999999999 99999999999999864   367899999999987 889999999


Q ss_pred             EEcccccCCCeeeEEEeCCCC----CCeEEEEEEEEEEec
Q 005736          569 VNLEGLVEGSVRDIWVPLEKV----NTGELRLQIEATRVD  604 (680)
Q Consensus       569 i~L~~l~~~~~~~~w~~L~~~----~~G~i~l~l~~~~~~  604 (680)
                      ++|+++..+.....|++|.+.    ..|+|+++++|.+..
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~  119 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPD  119 (127)
T ss_pred             EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCC
Confidence            999999988888999999743    258999999999654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.62  E-value=3.3e-15  Score=134.66  Aligned_cols=91  Identities=16%  Similarity=0.254  Sum_probs=77.8

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCccceeE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPRWDSMF  367 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wne~f  367 (680)
                      .|.|.|+|++|++|+..+ .+.                      +||||++.+.     ..+++|++ +++.||+|||+|
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~----------------------~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F   68 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSD----------------------PDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEML   68 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCC----------------------CCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEE
Confidence            489999999999999998 554                      3999999996     34678998 799999999999


Q ss_pred             EEEE-e--cC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          368 NMVL-H--EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       368 ~~~v-~--~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      .|.+ .  +. ...|.|+|||+|.. +++++||++.++|+++..+
T Consensus        69 ~f~~~~~~~l~~~~L~~~V~d~d~~-~~~~~lG~~~i~l~~l~~~  112 (122)
T cd08381          69 VYDGLPVEDLQQRVLQVSVWSHDSL-VENEFLGGVCIPLKKLDLS  112 (122)
T ss_pred             EEecCChHHhCCCEEEEEEEeCCCC-cCCcEEEEEEEeccccccC
Confidence            9987 2  22 45799999999986 6899999999999998643

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.61  E-value=6.1e-15  Score=132.94  Aligned_cols=111  Identities=16%  Similarity=0.334  Sum_probs=90.7

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEEecC
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVLHEE  374 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v~~~  374 (680)
                      |.|+|++|++|++.|..|.+                      ||||.+.+++. ..+|++ ++++||.|||.|.|.+.+.
T Consensus         2 l~v~vi~a~~L~~~d~~g~~----------------------DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~   59 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSS----------------------DPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG   59 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCC----------------------CceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC
Confidence            78999999999999876643                      99999999865 468988 7899999999999998776


Q ss_pred             CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc-----eeeEEE
Q 005736          375 TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN-----SGELTV  449 (680)
Q Consensus       375 ~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~-----~G~l~~  449 (680)
                      ...|.|+|||++.. ++|++||++.+++..+...+                     ...+.|++|.+..     .|++++
T Consensus        60 ~~~l~v~v~d~~~~-~~d~~iG~~~~~~~~~~~~~---------------------~~~~~W~~L~~~~~~~~~~G~i~l  117 (121)
T cd04054          60 FHTVSFYVLDEDTL-SRDDVIGKVSLTREVISAHP---------------------RGIDGWMNLTEVDPDEEVQGEIHL  117 (121)
T ss_pred             CCEEEEEEEECCCC-CCCCEEEEEEEcHHHhccCC---------------------CCCCcEEECeeeCCCCccccEEEE
Confidence            67899999999986 68999999999988875221                     1245688886532     688876


Q ss_pred             EE
Q 005736          450 RL  451 (680)
Q Consensus       450 ~l  451 (680)
                      ++
T Consensus       118 ~~  119 (121)
T cd04054         118 EL  119 (121)
T ss_pred             EE
Confidence            65

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.61  E-value=4e-15  Score=130.97  Aligned_cols=92  Identities=16%  Similarity=0.214  Sum_probs=77.0

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc----eeeeecc-CCCCCCcc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE----LTRRTDA-RPGSDPRW  363 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~----~~~~T~v-~~t~nP~W  363 (680)
                      .+.+..|.|.|+|++|++|+ .+  |.                      +||||++.+..    .+++|++ ++|+||+|
T Consensus         8 ~Y~~~~~~L~V~vikA~~L~-~~--g~----------------------sDPYVKv~L~~~~k~~k~kT~v~rktlnPvf   62 (118)
T cd08677           8 SYDKQKAELHVNILEAENIS-VD--AG----------------------CECYISGCVSVSEGQKEAQTALKKLALHTQW   62 (118)
T ss_pred             EEcCcCCEEEEEEEEecCCC-CC--CC----------------------CCeEEEEEEcCCcCccEEEcceecCCCCCcc
Confidence            33345599999999999998 22  32                      39999999963    5778998 79999999


Q ss_pred             ceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          364 DSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       364 ne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      ||+|.|.|...   ...|.|.|||+|+. +++++||++.+++.++.
T Consensus        63 nE~f~F~v~~~~l~~~tL~~~V~d~Drf-s~~d~IG~v~l~l~~~~  107 (118)
T cd08677          63 EEELVFPLPEEESLDGTLTLTLRCCDRF-SRHSTLGELRLKLADVS  107 (118)
T ss_pred             ccEEEEeCCHHHhCCcEEEEEEEeCCCC-CCCceEEEEEEcccccc
Confidence            99999998763   45799999999997 69999999999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.60  E-value=6.7e-15  Score=130.60  Aligned_cols=98  Identities=19%  Similarity=0.376  Sum_probs=86.7

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC-----ceEEEEEEEEecCC-
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF-  559 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~-----~~~L~i~V~d~~~~-  559 (680)
                      .+.|+|+|++|++|.    .+.+||||+++++++.++|+++ ++.||.|||+|.|.+..+     ...|.|+|||++.. 
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~   78 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR   78 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence            458999999999998    4789999999999999999999 999999999999997643     46899999999987 


Q ss_pred             CCceeEEEEEEcccccCC---CeeeEEEeCCC
Q 005736          560 GDENMGSARVNLEGLVEG---SVRDIWVPLEK  588 (680)
Q Consensus       560 ~d~~iG~~~i~L~~l~~~---~~~~~w~~L~~  588 (680)
                      ++++||++.++|+++..+   .....|++|.+
T Consensus        79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            799999999999998755   34688999975

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.60  E-value=3e-15  Score=132.75  Aligned_cols=98  Identities=27%  Similarity=0.491  Sum_probs=85.7

Q ss_pred             cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CEEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~-~~~dpyv~v~l~---~~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d~~~  558 (680)
                      |+|+|+|++|++|+..+.. +.+||||++++.   +..++|+++ ++.||.|||+|.|.+..    ....|.|+|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            5899999999999998887 899999999983   467899999 99999999999998764    25689999999998


Q ss_pred             C-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                      . +|++||++.+++.++..   ...|+++..
T Consensus        81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~~  108 (111)
T cd04041          81 FTADDRLGRVEIDLKELIE---DRNWMGRRE  108 (111)
T ss_pred             CCCCCcceEEEEEHHHHhc---CCCCCcccc
Confidence            8 89999999999999873   347887764

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.60  E-value=5.4e-15  Score=130.04  Aligned_cols=91  Identities=19%  Similarity=0.327  Sum_probs=80.3

Q ss_pred             cEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC--ceEEEEEEEEecCC-
Q 005736          488 RKINVTVVEGKDLMPKDKS----GKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF-  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~----~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~~-  559 (680)
                      |+|.|+|++|++|+..+..    +.+||||+++++++.++|+++ ++.||+|||.|.|.+.+.  ...|.|+|||++.. 
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            5899999999999886532    358999999999999999999 999999999999998753  45899999999988 


Q ss_pred             CCceeEEEEEEcccccCCC
Q 005736          560 GDENMGSARVNLEGLVEGS  578 (680)
Q Consensus       560 ~d~~iG~~~i~L~~l~~~~  578 (680)
                      +|++||++.++|+++..+.
T Consensus        81 ~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          81 FNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCcceEEEEEEHHHHHhhC
Confidence            8999999999999987543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.60  E-value=1.5e-14  Score=132.63  Aligned_cols=124  Identities=16%  Similarity=0.378  Sum_probs=95.0

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCC-cccccccCCCCccccccCCCCCCeEEEEEEccee-eeecc-CCCCCCccceeEEEE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSP-SRRQQNYSADSSLEEHYEDKDLTTFVEIELEELT-RRTDA-RPGSDPRWDSMFNMV  370 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~-~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~-~~T~v-~~t~nP~Wne~f~~~  370 (680)
                      .|.|+|+|++|++|++.|..+.. .|+..             +..+||||++.++++. .+|++ +++.||.|||+|.|.
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~-------------~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~   69 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKG-------------SQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTE   69 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccC-------------ccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEE
Confidence            39999999999999988753210 00000             1235999999999754 68887 789999999999999


Q ss_pred             EecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEE
Q 005736          371 LHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVR  450 (680)
Q Consensus       371 v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~  450 (680)
                      +. ....|.|.|||.+.. .+|++||++.++|.++..+.                    +...+.|++|+  +.|+++++
T Consensus        70 v~-~~~~l~~~v~d~~~~-~~~~~iG~~~i~l~~l~~~~--------------------~~~~~~w~~L~--~~G~l~l~  125 (132)
T cd04014          70 VH-NGRNLELTVFHDAAI-GPDDFVANCTISFEDLIQRG--------------------SGSFDLWVDLE--PQGKLHVK  125 (132)
T ss_pred             cC-CCCEEEEEEEeCCCC-CCCceEEEEEEEhHHhcccC--------------------CCcccEEEEcc--CCcEEEEE
Confidence            97 346799999998875 58999999999999986521                    22457899997  45999988


Q ss_pred             EEEe
Q 005736          451 LVLK  454 (680)
Q Consensus       451 l~l~  454 (680)
                      +.++
T Consensus       126 ~~~~  129 (132)
T cd04014         126 IELK  129 (132)
T ss_pred             EEEe
Confidence            8664

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.60  E-value=4.3e-15  Score=131.77  Aligned_cols=91  Identities=19%  Similarity=0.358  Sum_probs=78.4

Q ss_pred             eEEEEEEEecCCCCCCCCC-CCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccceeEEE
Q 005736          295 GIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWDSMFNM  369 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~-g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wne~f~~  369 (680)
                      |+|+|+|++|++|++.|.. +.                      +||||++.+.   ....+|++ ++++||+|||+|.|
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~----------------------~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f   58 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGS----------------------SDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFV   58 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCC----------------------CCccEEEEEccCCCccEeeeeECCCCCCccceeEEE
Confidence            7999999999999998865 54                      3999999985   34678998 89999999999999


Q ss_pred             EEecC----CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          370 VLHEE----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       370 ~v~~~----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      .+...    ...|.|+|||+|.. ++|++||++.+++.++.+.
T Consensus        59 ~~~~~~~~~~~~l~~~V~d~d~~-~~dd~lG~~~i~l~~l~~~  100 (111)
T cd04041          59 LVTPDEVKAGERLSCRLWDSDRF-TADDRLGRVEIDLKELIED  100 (111)
T ss_pred             EeCchhccCCCEEEEEEEeCCCC-CCCCcceEEEEEHHHHhcC
Confidence            87653    45799999999986 5899999999999999743

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.60  E-value=1.1e-14  Score=131.67  Aligned_cols=90  Identities=19%  Similarity=0.333  Sum_probs=79.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE  374 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~  374 (680)
                      .|+|+|++|++|++.+..+.                      +||||++.+++...+|++ +++.||.|||+|.|.+.+.
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~----------------------~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~   58 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGT----------------------SDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG   58 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCC----------------------cCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC
Confidence            38999999999999886554                      399999999998899998 7899999999999999876


Q ss_pred             -CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          375 -TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       375 -~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                       ...|.|+|||++.. +++++||++.+++.++...
T Consensus        59 ~~~~l~~~v~d~~~~-~~~~~iG~~~~~l~~l~~~   92 (123)
T cd04025          59 ADSPLSVEVWDWDLV-SKNDFLGKVVFSIQTLQQA   92 (123)
T ss_pred             CCCEEEEEEEECCCC-CCCcEeEEEEEEHHHcccC
Confidence             56899999999876 5899999999999998643

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.60  E-value=9.8e-15  Score=131.20  Aligned_cols=107  Identities=21%  Similarity=0.314  Sum_probs=94.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCcee
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM  564 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~i  564 (680)
                      |.|+|+|++|++|+..+..+.+||||++.+++ ..++|+++ ++.||.|||+|.|.+....+.|.|+|||++.. +|++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            57999999999999988889999999999966 67899999 99999999999999887778999999999988 88999


Q ss_pred             EEEEEEcccccCCCeeeEEEeCCCCCCeEEE
Q 005736          565 GSARVNLEGLVEGSVRDIWVPLEKVNTGELR  595 (680)
Q Consensus       565 G~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~  595 (680)
                      |++.+++.++... ..+.||.|-+.+.+.+.
T Consensus        81 G~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~  110 (120)
T cd04045          81 GSVEINVSDLIKK-NEDGKYVEYDDEEERLK  110 (120)
T ss_pred             eEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence            9999999999876 45778888776666553

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.59  E-value=6.6e-15  Score=136.78  Aligned_cols=104  Identities=18%  Similarity=0.254  Sum_probs=89.5

Q ss_pred             EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC--CceEEEEE
Q 005736          490 INVTVVEGKDLMPKDKS--------------GKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVK  552 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~--------------~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~--~~~~L~i~  552 (680)
                      |.|+|++|++|+.++..              +.+||||+|.++++..+|+++ ++.||+|||+|.|.+..  ..+.|.|+
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~   81 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ   81 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence            78999999999988744              368999999999999999999 99999999999999754  36789999


Q ss_pred             EEEecCC-CCceeEEEEEEcccccCCCe-------eeEEEeCCCCCCeE
Q 005736          553 CYNEEIF-GDENMGSARVNLEGLVEGSV-------RDIWVPLEKVNTGE  593 (680)
Q Consensus       553 V~d~~~~-~d~~iG~~~i~L~~l~~~~~-------~~~w~~L~~~~~G~  593 (680)
                      |||++.. +|++||.+.++|.++.....       ...|+.|.+..++.
T Consensus        82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~  130 (151)
T cd04018          82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY  130 (151)
T ss_pred             EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence            9999988 99999999999999875442       36888887765554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.59  E-value=8.5e-15  Score=132.61  Aligned_cols=97  Identities=14%  Similarity=0.181  Sum_probs=80.2

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCC-CCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCC
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDP  361 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~-g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP  361 (680)
                      .+.+..|.|.|+|++|+||++.+.. |.                      +||||++.+.     ...++|++ +++.||
T Consensus         9 ~y~~~~~~L~V~Vi~a~~L~~~~~~~~~----------------------~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP   66 (125)
T cd04029           9 SYDYKTQSLNVHVKECRNLAYGDEAKKR----------------------SNPYVKTYLLPDKSRQSKRKTSIKRNTTNP   66 (125)
T ss_pred             EEECCCCeEEEEEEEecCCCccCCCCCC----------------------CCcEEEEEEEcCCccccceEeeeeeCCCCC
Confidence            3445569999999999999988743 32                      4999999985     23578988 789999


Q ss_pred             ccceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          362 RWDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       362 ~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      +|||+|.|.+...   ...|.|+|||+|.. +++++||++.++|.++..+
T Consensus        67 ~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~-~~~~~lG~~~i~l~~~~~~  115 (125)
T cd04029          67 VYNETLKYSISHSQLETRTLQLSVWHYDRF-GRNTFLGEVEIPLDSWNFD  115 (125)
T ss_pred             cccceEEEECCHHHhCCCEEEEEEEECCCC-CCCcEEEEEEEeCCccccc
Confidence            9999999998752   45799999999986 6999999999999998644

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.59  E-value=2.8e-14  Score=132.02  Aligned_cols=90  Identities=16%  Similarity=0.358  Sum_probs=82.2

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE  373 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~  373 (680)
                      |.|+|+|++|++|+..+. +.                      +||||+++++++..+|++ +++.||+|||+|.|.+.+
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~----------------------sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~   58 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TS----------------------SDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPN   58 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CC----------------------cCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecC
Confidence            899999999999998886 43                      399999999999999998 899999999999999998


Q ss_pred             CCCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       374 ~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      ....+.|+|||+|.. ++|++||++.++++++...
T Consensus        59 ~~~~l~~~V~D~d~~-~~dd~iG~a~i~l~~l~~~   92 (145)
T cd04038          59 PMAPLKLEVFDKDTF-SKDDSMGEAEIDLEPLVEA   92 (145)
T ss_pred             CCCEEEEEEEECCCC-CCCCEEEEEEEEHHHhhhh
Confidence            888999999999986 5899999999999998654

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.59  E-value=1.4e-14  Score=133.07  Aligned_cols=118  Identities=16%  Similarity=0.323  Sum_probs=91.8

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-------eeeecc-CCCCCCccceeE
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-------TRRTDA-RPGSDPRWDSMF  367 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-------~~~T~v-~~t~nP~Wne~f  367 (680)
                      .|+|+|++|++|++.|..|.                      +||||++.+++.       ..+|++ +++.||.|||+|
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~----------------------~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f   58 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGA----------------------SDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEF   58 (133)
T ss_pred             CEEEEEEEeECCCcccCCCC----------------------cCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEE
Confidence            38999999999999886654                      399999999754       468887 899999999999


Q ss_pred             EEEEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC-----
Q 005736          368 NMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV-----  442 (680)
Q Consensus       368 ~~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~-----  442 (680)
                      .|.+......|.|+|||+|.. ++|++||++.+++.++......      +.          +.....|++|++.     
T Consensus        59 ~f~~~~~~~~l~~~v~d~~~~-~~~~~iG~~~i~l~~l~~~~~~------~~----------~~~~~~~~~l~~~~~~~~  121 (133)
T cd04033          59 FFRVNPREHRLLFEVFDENRL-TRDDFLGQVEVPLNNLPTETPG------NE----------RRYTFKDYLLRPRSSKSR  121 (133)
T ss_pred             EEEEcCCCCEEEEEEEECCCC-CCCCeeEEEEEEHHHCCCcCcc------cc----------ccccchheeeeecCCCCc
Confidence            999987677899999999986 5899999999999998754210      00          0123456666632     


Q ss_pred             ceeeEEEEEE
Q 005736          443 NSGELTVRLV  452 (680)
Q Consensus       443 ~~G~l~~~l~  452 (680)
                      ..|+|++++.
T Consensus       122 ~~G~l~~~~~  131 (133)
T cd04033         122 VKGHLRLYMA  131 (133)
T ss_pred             ceeEEEEEEe
Confidence            3688888774

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.59  E-value=1.2e-14  Score=129.26  Aligned_cols=87  Identities=15%  Similarity=0.223  Sum_probs=76.0

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeeccCCCCCCccceeEEEEEecC
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEE  374 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v~~t~nP~Wne~f~~~v~~~  374 (680)
                      |.|.|+|++|++|+..+  +                       .||||+|++++++.+|++.++.||.|||.|.|.+.+.
T Consensus         2 ~~L~V~Vv~Ar~L~~~~--~-----------------------~dPYV~Ik~g~~k~kT~v~~~~nP~WnE~F~F~~~~~   56 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD--K-----------------------FNTYVTLKVQNVKSTTIAVRGSQPCWEQDFMFEINRL   56 (127)
T ss_pred             ceEEEEEEEeeCCCCCC--C-----------------------CCCeEEEEECCEEeEeeECCCCCCceeeEEEEEEcCC
Confidence            78999999999997544  1                       3899999999999999985446999999999999887


Q ss_pred             CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          375 TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       375 ~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      .+.|.++|||+|.  ..||+||++.|+|.++...
T Consensus        57 ~~~L~v~V~dkd~--~~DD~lG~v~i~L~~v~~~   88 (127)
T cd08394          57 DLGLVIELWNKGL--IWDTLVGTVWIPLSTIRQS   88 (127)
T ss_pred             CCEEEEEEEeCCC--cCCCceEEEEEEhHHcccC
Confidence            7779999999885  4999999999999998643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.59  E-value=1.5e-14  Score=132.34  Aligned_cols=107  Identities=32%  Similarity=0.494  Sum_probs=94.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC--ceEEEEEEEEecCC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~~  559 (680)
                      +.|+|+|++|++|+..+..+.+||||++.+.     ...++|+++ ++.+|.|||+|.|.+...  ...|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            4899999999999988888899999999994     378999999 999999999999998753  56899999999877


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEE
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELR  595 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~  595 (680)
                       ++++||++.++|.++... ....||+|.+.+.|+..
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~~  128 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEYY  128 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECcCccccccc
Confidence             889999999999998754 67899999998888753

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.59  E-value=8.8e-15  Score=132.59  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=79.9

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCC-CCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCC
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDP  361 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~-g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP  361 (680)
                      .+.+..+.|.|+|++|+||++.|.. |.                      +||||++.+.     ...++|++ +++.||
T Consensus         9 ~y~~~~~~L~V~vi~a~~L~~~d~~~g~----------------------~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP   66 (125)
T cd08393           9 DYDPKLRELHVHVIQCQDLAAADPKKQR----------------------SDPYVKTYLLPDKSNRGKRKTSVKKKTLNP   66 (125)
T ss_pred             EEECCCCEEEEEEEEeCCCCCcCCCCCC----------------------CCcEEEEEEEcCCCccccccCccCcCCCCC
Confidence            3344458999999999999998864 43                      3999999995     23578998 799999


Q ss_pred             ccceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          362 RWDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       362 ~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      +|||+|.|.+...   ...|.|+|||+|.. +++++||++.++|+++..
T Consensus        67 ~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~-~~~~~iG~~~i~L~~~~~  114 (125)
T cd08393          67 VFNETLRYKVEREELPTRVLNLSVWHRDSL-GRNSFLGEVEVDLGSWDW  114 (125)
T ss_pred             ccCceEEEECCHHHhCCCEEEEEEEeCCCC-CCCcEeEEEEEecCcccc
Confidence            9999999998752   35799999999986 689999999999999853

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.58  E-value=1.5e-14  Score=131.22  Aligned_cols=96  Identities=8%  Similarity=0.153  Sum_probs=80.1

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCC-CCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCC
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDP  361 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~-g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP  361 (680)
                      .+....+.|.|+|++|+||++.+.. |.                      +||||++.+.     ..+++|++ +++.||
T Consensus         9 ~Y~~~~~~L~V~V~~a~nL~~~d~~~g~----------------------~dpYVkv~llp~~~~~~k~kT~v~~~t~nP   66 (128)
T cd08392           9 HYNFRTSCLEITIKACRNLAYGDEKKKK----------------------CHPYVKVCLLPDKSHNSKRKTAVKKGTVNP   66 (128)
T ss_pred             EEeCCCCEEEEEEEecCCCCccCCCCCC----------------------CCeEEEEEEEeCCcccceeecccccCCCCC
Confidence            3444559999999999999998854 43                      3999999986     23678888 799999


Q ss_pred             ccceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          362 RWDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       362 ~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      +|||+|.|.+...   ...|.+.|||.+.. .++++||++.|+|+++.-
T Consensus        67 vfNE~F~f~v~~~~l~~~~L~v~V~~~~~~-~~~~~lG~~~i~L~~~~~  114 (128)
T cd08392          67 VFNETLKYVVEADLLSSRQLQVSVWHSRTL-KRRVFLGEVLIPLADWDF  114 (128)
T ss_pred             ccceEEEEEcCHHHhCCcEEEEEEEeCCCC-cCcceEEEEEEEcCCccc
Confidence            9999999998753   34799999999986 689999999999999853

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.58  E-value=2.6e-14  Score=130.02  Aligned_cols=89  Identities=15%  Similarity=0.372  Sum_probs=77.3

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE  374 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~  374 (680)
                      .|+|+|++|++|+..|..|.                      +||||.+.+++...+|++ +++.||.|||+|.|.+...
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~----------------------~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~   59 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGT----------------------SDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS   59 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCC----------------------cCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC
Confidence            58999999999999886654                      399999999988889998 7899999999999998766


Q ss_pred             CCeEEEEEEEeCCC----------CCCCceeEEEEEeccccc
Q 005736          375 TGTVRFNLYECIPG----------HVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       375 ~~~l~l~v~d~d~~----------~~~d~~lG~~~i~l~~l~  406 (680)
                      ...|.|+|||+|..          ..++++||++.+++.++.
T Consensus        60 ~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~  101 (127)
T cd04027          60 SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS  101 (127)
T ss_pred             CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc
Confidence            67899999999852          137999999999998874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.58  E-value=2.6e-14  Score=129.56  Aligned_cols=102  Identities=27%  Similarity=0.430  Sum_probs=92.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-C-CCCCeeeeEEEEEeeCC----ceEEEEEEEEecCC-C
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG----GECLMVKCYNEEIF-G  560 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~-t~nP~wne~f~f~v~~~----~~~L~i~V~d~~~~-~  560 (680)
                      |.|.|+|++|++|+..+..+.+||||++.++++.++|++. + +.||.|||+|.|.+..+    ...|.|+|||++.. +
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            4799999999999988888899999999999999999988 5 89999999999999875    57899999999988 8


Q ss_pred             CceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736          561 DENMGSARVNLEGLVEGSVRDIWVPLEKV  589 (680)
Q Consensus       561 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  589 (680)
                      +++||++.++|.++..++..+.|+.|...
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            99999999999999887778899999874

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.58  E-value=1.4e-14  Score=128.46  Aligned_cols=98  Identities=26%  Similarity=0.397  Sum_probs=86.5

Q ss_pred             CCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCCCCceeEEEEEEcccccC-CCee
Q 005736          505 KSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEGLVE-GSVR  580 (680)
Q Consensus       505 ~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~-~~~~  580 (680)
                      .+|.+||||++++++ ...+|+++ ++.||.|||.|.|.+.+. ...|.|.|||++..++++||++.++|+++.. ....
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~   88 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVG   88 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcc
Confidence            357899999999977 46799999 999999999999999875 6789999999987788999999999999864 4456


Q ss_pred             eEEEeCCCCCCeEEEEEEEEEE
Q 005736          581 DIWVPLEKVNTGELRLQIEATR  602 (680)
Q Consensus       581 ~~w~~L~~~~~G~i~l~l~~~~  602 (680)
                      ..||+|++...|+|+++++|.|
T Consensus        89 ~~w~~L~~~~~G~i~~~~~~~p  110 (111)
T cd04052          89 QQWFPLSGNGQGRIRISALWKP  110 (111)
T ss_pred             ceeEECCCCCCCEEEEEEEEec
Confidence            8999999877899999999985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.57  E-value=1.6e-14  Score=130.83  Aligned_cols=96  Identities=18%  Similarity=0.279  Sum_probs=81.3

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWD  364 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wn  364 (680)
                      .+.+..|.|.|+|++|++|++.+..|.                      +||||++.+.   ...++|++ +++.||+||
T Consensus        10 ~y~~~~~~L~V~v~~a~~L~~~d~~g~----------------------~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wn   67 (124)
T cd08387          10 EYDKDMGILNVKLIQARNLQPRDFSGT----------------------ADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD   67 (124)
T ss_pred             EECCCCCEEEEEEEEeeCCCCCCCCCC----------------------CCCeEEEEEecCCCCcEeCceEcCCCCCCcc
Confidence            334456999999999999999887664                      3999999984   45688998 799999999


Q ss_pred             eeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          365 SMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       365 e~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      |+|.|.+...   ...|.|+|||+|.. .+|++||++.++++++..
T Consensus        68 e~f~f~v~~~~l~~~~l~i~V~d~~~~-~~~~~iG~~~i~l~~~~~  112 (124)
T cd08387          68 ESFVFEVPPQELPKRTLEVLLYDFDQF-SRDECIGVVELPLAEVDL  112 (124)
T ss_pred             cEEEEeCCHHHhCCCEEEEEEEECCCC-CCCceeEEEEEecccccC
Confidence            9999998753   45799999999876 589999999999999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.57  E-value=3.1e-14  Score=128.68  Aligned_cols=89  Identities=19%  Similarity=0.349  Sum_probs=77.0

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-ceeeeecc-CCCCCCccceeEEEEEecC
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDA-RPGSDPRWDSMFNMVLHEE  374 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-~~~~~T~v-~~t~nP~Wne~f~~~v~~~  374 (680)
                      |+|+|++|++|++.+..+.                      +||||++.++ .+.++|++ +++.||.|||+|+|.+.. 
T Consensus         2 l~v~v~~A~~L~~~~~~~~----------------------~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-   58 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRL----------------------PDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-   58 (123)
T ss_pred             eEEEEEEecCCCccCCCCC----------------------CCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-
Confidence            7899999999999886654                      3999999996 67889998 789999999999999976 


Q ss_pred             CCeEEEEEEEeCCCCCC-CceeEEEEEecccccCC
Q 005736          375 TGTVRFNLYECIPGHVK-YDYLTSCEVKMKYVADD  408 (680)
Q Consensus       375 ~~~l~l~v~d~d~~~~~-d~~lG~~~i~l~~l~~~  408 (680)
                      .+.|.++|||++..+.. |++||++.+++.++...
T Consensus        59 ~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~   93 (123)
T cd08382          59 SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPL   93 (123)
T ss_pred             CCEEEEEEEECCCCCCCCCceEeEEEEEHHHcccc
Confidence            67899999999876322 68999999999998643

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.57  E-value=2.3e-14  Score=132.09  Aligned_cols=90  Identities=17%  Similarity=0.209  Sum_probs=76.1

Q ss_pred             CeEEEEEEEecCCCCCCC-CCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCcccee
Q 005736          294 GGIVYVRVISASKLSRSS-LRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDSM  366 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d-~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne~  366 (680)
                      .|.|.|+|++|+||.+.+ ..|.                      +||||++.+..     .+++|++ ++++||+|||+
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~----------------------sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~   85 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVL----------------------PAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQ   85 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCC----------------------cCCeEEEEEECCCccccceeceecCCCCCCccCCe
Confidence            489999999999999865 3343                      39999999952     3678998 89999999999


Q ss_pred             EEEEEecCCCeEEEEEE-EeCCCCCCCceeEEEEEeccccc
Q 005736          367 FNMVLHEETGTVRFNLY-ECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       367 f~~~v~~~~~~l~l~v~-d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      |.|.+......|.|+|| |++.. .++++||++.|+|+++.
T Consensus        86 F~f~v~l~~~~L~v~V~~d~~~~-~~~~~iG~~~i~L~~l~  125 (146)
T cd04028          86 LVFDVSPTGKTLQVIVWGDYGRM-DKKVFMGVAQILLDDLD  125 (146)
T ss_pred             EEEEEcCCCCEEEEEEEeCCCCC-CCCceEEEEEEEccccc
Confidence            99999855668999999 56664 58999999999999985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.57  E-value=1.3e-14  Score=131.68  Aligned_cols=108  Identities=24%  Similarity=0.364  Sum_probs=93.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeecc--CCCCCeeeeEEEEEeeCC-----ceEEEEEEEEecCC-
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA--HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF-  559 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~--~t~nP~wne~f~f~v~~~-----~~~L~i~V~d~~~~-  559 (680)
                      .|+|+|++|++|+..+..+.+||||++++++ +.++|++.  ++.||.|||.|.|.+...     ...|.|+|||++.. 
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            3899999999999888889999999999977 88999987  589999999999998875     57999999999886 


Q ss_pred             CCceeEEEEEEcccccCCCe-----eeEEEeCCCC---CCeEEEE
Q 005736          560 GDENMGSARVNLEGLVEGSV-----RDIWVPLEKV---NTGELRL  596 (680)
Q Consensus       560 ~d~~iG~~~i~L~~l~~~~~-----~~~w~~L~~~---~~G~i~l  596 (680)
                      ++++||++.++|.++..+..     ...||+|.+.   ..|.|++
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            89999999999999885443     4789999863   3577653

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.56  E-value=5.7e-14  Score=129.09  Aligned_cols=111  Identities=18%  Similarity=0.387  Sum_probs=95.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEE-Eeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-----C
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV-QRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-----G  560 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-----~  560 (680)
                      ..|.|.|++|++|+.++     +|||++.+++.. .||+++ ++.||.|+|.|.|.+......+.|.||+.+..     +
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~   85 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDK   85 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccC
Confidence            47999999999998755     799999998866 699999 99999999999998776667899999865532     5


Q ss_pred             CceeEEEEEEcccccCCCeeeEEEeCCCCC-------------CeEEEEEEEEEEe
Q 005736          561 DENMGSARVNLEGLVEGSVRDIWVPLEKVN-------------TGELRLQIEATRV  603 (680)
Q Consensus       561 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-------------~G~i~l~l~~~~~  603 (680)
                      +.+||.+.|++.++..+...+.||+|.+..             .++|+++++|.+.
T Consensus        86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~  141 (146)
T cd04013          86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST  141 (146)
T ss_pred             CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence            789999999999999888899999997532             2689999999854

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.56  E-value=1.7e-14  Score=127.74  Aligned_cols=88  Identities=18%  Similarity=0.304  Sum_probs=77.6

Q ss_pred             EEEEEEecCCCCCCCC-CCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCcc-ceeEEEEEec
Q 005736          297 VYVRVISASKLSRSSL-RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRW-DSMFNMVLHE  373 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~-~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~W-ne~f~~~v~~  373 (680)
                      |.|+|++|++|++++. .|.                      +||||++.+++..++|++ ++++||.| ||+|.|.+..
T Consensus         1 l~V~v~~a~~L~~~d~~~~~----------------------~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~   58 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDL----------------------TDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDD   58 (110)
T ss_pred             CEEEEEEEECCCccccCCCC----------------------CCceEEEEECCeeEecceecCCCCCcccCcEEEEEcCh
Confidence            6899999999998874 343                      399999999999999998 79999999 9999999876


Q ss_pred             C---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          374 E---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       374 ~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      .   .+.|.|+|||+|.. ++|++||++.+++.++..
T Consensus        59 ~~l~~~~l~i~V~d~d~~-~~~~~iG~~~~~l~~l~~   94 (110)
T cd08688          59 EELQDEPLQIRVMDHDTY-SANDAIGKVYIDLNPLLL   94 (110)
T ss_pred             HHcCCCeEEEEEEeCCCC-CCCCceEEEEEeHHHhcc
Confidence            3   46899999999986 589999999999999975

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.56  E-value=3.3e-14  Score=129.32  Aligned_cols=96  Identities=16%  Similarity=0.207  Sum_probs=78.2

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCC-CCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCcc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRW  363 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~-g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~W  363 (680)
                      .+.+..+.|+|+|++|++|+..+.. |.                      +||||++.+.   .+.++|++ +++.||+|
T Consensus        10 ~y~~~~~~L~V~Vi~a~~L~~~~~~~~~----------------------~DpyV~v~l~~~~~~~~kT~v~~~t~nP~w   67 (128)
T cd08388          10 RYNSEKKALLVNIIECRDLPAMDEQSGT----------------------SDPYVKLQLLPEKEHKVKTRVLRKTRNPVY   67 (128)
T ss_pred             EEECCCCEEEEEEEEeECCCCCCCCCCC----------------------cCCEEEEEEeCCcCceeeccEEcCCCCCce
Confidence            3344458999999999999998764 43                      4999999985   44678998 79999999


Q ss_pred             ceeEEEE-Eec--C-CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          364 DSMFNMV-LHE--E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       364 ne~f~~~-v~~--~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      ||+|.|. +..  . ...|.++|||+|.. ++|++||++.++|+++..
T Consensus        68 nE~F~f~~~~~~~~~~~~L~~~V~d~d~~-~~d~~lG~~~i~L~~l~~  114 (128)
T cd08388          68 DETFTFYGIPYNQLQDLSLHFAVLSFDRY-SRDDVIGEVVCPLAGADL  114 (128)
T ss_pred             eeEEEEcccCHHHhCCCEEEEEEEEcCCC-CCCceeEEEEEeccccCC
Confidence            9999993 442  2 34699999999986 689999999999999853

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.55  E-value=8.7e-14  Score=127.44  Aligned_cols=98  Identities=18%  Similarity=0.299  Sum_probs=81.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CC--EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GK--IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~--~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~  558 (680)
                      ..|.|+|++|+||+..+..+.+||||++++   ++  .+.+|+++ ++.||+|||+|.|.+..   .+..|.|+|||++.
T Consensus        15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~   94 (136)
T cd08406          15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE   94 (136)
T ss_pred             CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC
Confidence            379999999999999988899999999999   22  36689999 99999999999999875   36789999999998


Q ss_pred             C-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          559 F-GDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      . ++++||++.+....  .+...++|..+.
T Consensus        95 ~~~~~~iG~v~lg~~~--~g~~~~hW~~ml  122 (136)
T cd08406          95 DGKTPNVGHVIIGPAA--SGMGLSHWNQML  122 (136)
T ss_pred             CCCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence            7 89999999998764  233344555443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.55  E-value=6.5e-14  Score=128.79  Aligned_cols=117  Identities=15%  Similarity=0.147  Sum_probs=89.6

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE  374 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~  374 (680)
                      .|+|+|++|++|+..|..|.+                      ||||++.++++..+|++ +++.||.|||+|.|.+...
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~----------------------dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~   59 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLS----------------------DPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVEL   59 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCC----------------------CCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeec
Confidence            589999999999998876653                      99999999999999998 7999999999999975321


Q ss_pred             ----------CCeEEEEEEEeCCCCCCCceeEEEEE-ecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC-
Q 005736          375 ----------TGTVRFNLYECIPGHVKYDYLTSCEV-KMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV-  442 (680)
Q Consensus       375 ----------~~~l~l~v~d~d~~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~-  442 (680)
                                ...|.|+|||+|.. ++|++||++.+ ++..+....                   .+.....|++|... 
T Consensus        60 ~~~~~~~~~~~~~l~v~V~d~d~~-~~d~~iG~~~i~~~~~~~~~~-------------------~~~~~~~W~~L~~~~  119 (135)
T cd04017          60 YGSPEEIAQNPPLVVVELFDQDSV-GKDEFLGRSVAKPLVKLDLEE-------------------DFPPKLQWFPIYKGG  119 (135)
T ss_pred             cCChHHhhcCCCEEEEEEEeCcCC-CCCccceEEEeeeeeecccCC-------------------CCCCCceEEEeecCC
Confidence                      24699999999986 68999999987 443332110                   02244568887533 


Q ss_pred             -ceeeEEEEEEEe
Q 005736          443 -NSGELTVRLVLK  454 (680)
Q Consensus       443 -~~G~l~~~l~l~  454 (680)
                       ..|+|.+++.+.
T Consensus       120 ~~~Geil~~~~~~  132 (135)
T cd04017         120 QSAGELLAAFELI  132 (135)
T ss_pred             CchhheeEEeEEE
Confidence             369999887654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.55  E-value=3.4e-14  Score=128.93  Aligned_cols=94  Identities=17%  Similarity=0.267  Sum_probs=78.5

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~  362 (680)
                      .+.+..|.|.|+|++|++|++.+..+.                      +||||++.+..     ..++|++ +++.||+
T Consensus        10 ~~~~~~~~L~V~vi~a~~L~~~~~~~~----------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~   67 (125)
T cd04031          10 WYDKVTSQLIVTVLQARDLPPRDDGSL----------------------RNPYVKVYLLPDRSEKSKRRTKTVKKTLNPE   67 (125)
T ss_pred             EEeCCCCEEEEEEEEecCCCCcCCCCC----------------------CCCEEEEEEccCCCccccccccccCCCCCCc
Confidence            334445999999999999999886554                      39999999864     5678888 7999999


Q ss_pred             cceeEEEEEec----CCCeEEEEEEEeCCCCCCCceeEEEEEecccc
Q 005736          363 WDSMFNMVLHE----ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYV  405 (680)
Q Consensus       363 Wne~f~~~v~~----~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l  405 (680)
                      |||+|.|.+..    ....|.|+|||++.. .++++||++.++|++.
T Consensus        68 wne~f~f~~~~~~~l~~~~l~~~V~d~~~~-~~~~~iG~~~i~l~~~  113 (125)
T cd04031          68 WNQTFEYSNVRRETLKERTLEVTVWDYDRD-GENDFLGEVVIDLADA  113 (125)
T ss_pred             cccEEEEcccCHHHhCCCEEEEEEEeCCCC-CCCcEeeEEEEecccc
Confidence            99999998644    246799999999986 5899999999999984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.55  E-value=4.3e-14  Score=127.43  Aligned_cols=90  Identities=23%  Similarity=0.357  Sum_probs=77.3

Q ss_pred             cCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736          293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       293 ~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      ..|.|+|+|++|++|+. +..+.                      +||||+|.++++.++|++ +++.||+|||+|.|..
T Consensus        26 ~~~~L~V~V~~A~~L~~-d~~g~----------------------~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~   82 (127)
T cd04032          26 GLATLTVTVLRATGLWG-DYFTS----------------------TDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGS   82 (127)
T ss_pred             CcEEEEEEEEECCCCCc-CcCCC----------------------CCeEEEEEECCccccCceecCCCCCcCCCEEEEec
Confidence            35999999999999974 44343                      399999999999999998 8999999999999975


Q ss_pred             ec--CCCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          372 HE--ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       372 ~~--~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      ..  ..+.|.|+|||+|.. ++|++||++.++|....
T Consensus        83 ~~~~~~~~L~v~V~D~d~~-s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          83 VELSPGGKLRFEVWDRDNG-WDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             ccCCCCCEEEEEEEeCCCC-CCCCeeEEEEEEecCCc
Confidence            44  357899999999986 69999999999999764

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.55  E-value=2.6e-14  Score=130.84  Aligned_cols=86  Identities=20%  Similarity=0.285  Sum_probs=75.1

Q ss_pred             cEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEe
Q 005736          488 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNE  556 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~--~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~  556 (680)
                      +.|.|.|++|+||...+.  .+.+||||+|++..     .+.+|+++ ++.||+|||+|.|.+..   .+..|.|+|||+
T Consensus        15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~   94 (138)
T cd08407          15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQ   94 (138)
T ss_pred             CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeC
Confidence            489999999999998873  35589999999922     36789999 99999999999999886   367899999999


Q ss_pred             cCC-CCceeEEEEEEccc
Q 005736          557 EIF-GDENMGSARVNLEG  573 (680)
Q Consensus       557 ~~~-~d~~iG~~~i~L~~  573 (680)
                      +.. ++++||++.+++..
T Consensus        95 d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          95 DSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             CCCcCcceeceEEecCcC
Confidence            988 89999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.55  E-value=4e-14  Score=131.36  Aligned_cols=86  Identities=21%  Similarity=0.342  Sum_probs=72.5

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccceeEEEE
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDSMFNMV  370 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne~f~~~  370 (680)
                      |.|+|++|++|..  ..|.                      +||||++.+..     +.++|++ +++.||+|||+|.|.
T Consensus         2 L~V~Vi~ArnL~~--~~g~----------------------sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~   57 (148)
T cd04010           2 LSVRVIECSDLAL--KNGT----------------------CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFD   57 (148)
T ss_pred             EEEEEEeCcCCCC--CCCC----------------------CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEE
Confidence            7899999999998  3343                      39999999975     6778998 789999999999999


Q ss_pred             Ee---------------cC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          371 LH---------------EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       371 v~---------------~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      +.               +. ...|.+.|||++.. .+|++||++.|++.++..
T Consensus        58 v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~-~~ddfLG~v~i~l~~l~~  109 (148)
T cd04010          58 VTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMG-GGDVFLGEVRIPLRGLDL  109 (148)
T ss_pred             EecccccccccccCCcccccEEEEEEEEEcCCCC-CCCceeEEEEEecccccc
Confidence            85               11 23689999999875 689999999999999864

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.54  E-value=4.8e-14  Score=127.79  Aligned_cols=94  Identities=19%  Similarity=0.255  Sum_probs=79.4

Q ss_pred             ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccce
Q 005736          290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWDS  365 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wne  365 (680)
                      +....|.|.|+|++|++|++.+..|.                      +||||++.+.   ...++|++ +++.||+|||
T Consensus        11 y~~~~~~L~V~v~~a~~L~~~d~~~~----------------------~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne   68 (124)
T cd08385          11 YDFQSNQLTVGIIQAADLPAMDMGGT----------------------SDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE   68 (124)
T ss_pred             EeCCCCEEEEEEEEeeCCCCccCCCC----------------------CCCEEEEEEEcCCCCceecccCcCCCCCceee
Confidence            33445999999999999999886654                      3999999985   24678888 7899999999


Q ss_pred             eEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          366 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       366 ~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      +|.|.+...   ...|.|+|||+|.. .+|++||++.+++.++.
T Consensus        69 ~f~f~i~~~~l~~~~l~~~V~d~d~~-~~~~~lG~~~i~l~~~~  111 (124)
T cd08385          69 TFTFKVPYSELGNKTLVFSVYDFDRF-SKHDLIGEVRVPLLTVD  111 (124)
T ss_pred             eEEEeCCHHHhCCCEEEEEEEeCCCC-CCCceeEEEEEecCccc
Confidence            999998752   45799999999986 68999999999999885

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.54  E-value=1e-13  Score=125.95  Aligned_cols=115  Identities=17%  Similarity=0.243  Sum_probs=92.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc---eeeeecc-CCCCCCccceeEEEEE
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE---LTRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~---~~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      .|.|+|++|++|+..+..+.                      +||||++.++.   ..++|++ +++.||.|||+|.|.+
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~----------------------~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i   59 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGL----------------------SDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEV   59 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCC----------------------CCceEEEEECCCCeeeecccEecCCCCCcccceEEEEc
Confidence            58899999999999886554                      39999998763   3678888 7899999999999999


Q ss_pred             ecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEE
Q 005736          372 HEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVR  450 (680)
Q Consensus       372 ~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~  450 (680)
                      ... .+.|.|+|||+|.. .++++||++.++|..+....                   .|...+.|+++.+  .|++++.
T Consensus        60 ~~~~~~~L~i~v~d~d~~-~~~~~iG~~~i~l~~~~~~~-------------------~~~~~~~w~~l~~--~g~i~l~  117 (126)
T cd04043          60 PAGEPLWISATVWDRSFV-GKHDLCGRASLKLDPKRFGD-------------------DGLPREIWLDLDT--QGRLLLR  117 (126)
T ss_pred             CCCCCCEEEEEEEECCCC-CCCceEEEEEEecCHHHcCC-------------------CCCCceEEEEcCC--CCeEEEE
Confidence            875 56899999999986 58999999999998763211                   0234578999865  5888888


Q ss_pred             EEEe
Q 005736          451 LVLK  454 (680)
Q Consensus       451 l~l~  454 (680)
                      +.+.
T Consensus       118 ~~~~  121 (126)
T cd04043         118 VSME  121 (126)
T ss_pred             EEEe
Confidence            7664

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.54  E-value=1.2e-13  Score=128.36  Aligned_cols=113  Identities=24%  Similarity=0.317  Sum_probs=93.7

Q ss_pred             EEEEEEEeec--CCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEEeeCC---------ceEEEEE
Q 005736          490 INVTVVEGKD--LMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG---------GECLMVK  552 (680)
Q Consensus       490 L~V~I~~a~~--L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~v~~~---------~~~L~i~  552 (680)
                      ..++|..|++  |+..+..+.+||||++++     +.++.+|+++ +|+||+|||+|.|.+...         ...|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            4566666666  667777788999999997     3479999999 999999999999998643         3579999


Q ss_pred             EEEecCC--CCceeEEEEEEcccccCCCeeeEEEeCCC---CCCeEEEEEEEEEE
Q 005736          553 CYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEK---VNTGELRLQIEATR  602 (680)
Q Consensus       553 V~d~~~~--~d~~iG~~~i~L~~l~~~~~~~~w~~L~~---~~~G~i~l~l~~~~  602 (680)
                      |||++.+  +|++||++.++|+.+..+.....|++|..   ..+|+|++++....
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~  138 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE  138 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence            9999986  69999999999999987766778999864   23699999998763

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.54  E-value=4.2e-14  Score=125.47  Aligned_cols=87  Identities=22%  Similarity=0.320  Sum_probs=75.1

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE  373 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~  373 (680)
                      -.|+|+|++|++|+    .|.                      +||||+++++++.++|++ +++.||.|||+|.|.+..
T Consensus         4 ~~l~V~v~~a~~L~----~~~----------------------~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~   57 (111)
T cd04011           4 FQVRVRVIEARQLV----GGN----------------------IDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHE   57 (111)
T ss_pred             EEEEEEEEEcccCC----CCC----------------------CCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCC
Confidence            36899999999998    233                      399999999999999998 789999999999999764


Q ss_pred             C-----CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          374 E-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       374 ~-----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      .     ...|.|+|||++.. ++|++||++.++|+++...
T Consensus        58 ~~~~l~~~~l~i~V~d~~~~-~~~~~iG~~~i~l~~v~~~   96 (111)
T cd04011          58 SPDELFDKIIKISVYDSRSL-RSDTLIGSFKLDVGTVYDQ   96 (111)
T ss_pred             CHHHHhcCeEEEEEEcCccc-ccCCccEEEEECCccccCC
Confidence            3     35799999999876 5899999999999998643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.54  E-value=3.2e-14  Score=127.55  Aligned_cols=90  Identities=14%  Similarity=0.307  Sum_probs=76.0

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccceeE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDSMF  367 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne~f  367 (680)
                      .|.|.|+|++|+||++.+ .|.                      +||||++.+..     ..++|++ +++.||+|||+|
T Consensus        11 ~~~L~V~Vi~ar~L~~~~-~g~----------------------~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F   67 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTN-SGT----------------------CNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETF   67 (119)
T ss_pred             CCEEEEEEEEEECCCCCC-CCC----------------------CCeeEEEEEEeCCCCcceEeCccccCCCCCccccEE
Confidence            489999999999999887 554                      39999999973     3568888 799999999999


Q ss_pred             EEEEecC--CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          368 NMVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       368 ~~~v~~~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      .|.+...  ...|.|.|||++.....+++||++.|++.++.
T Consensus        68 ~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~  108 (119)
T cd08685          68 SFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIV  108 (119)
T ss_pred             EEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhc
Confidence            9998653  35689999999875335799999999999986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.54  E-value=5.2e-14  Score=127.54  Aligned_cols=91  Identities=18%  Similarity=0.382  Sum_probs=79.6

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-C-CCCCCccceeEEEEEe
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-R-PGSDPRWDSMFNMVLH  372 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~-~t~nP~Wne~f~~~v~  372 (680)
                      |.|.|+|.+|++|++.+..+.                      +||||++.++++..+|++ + ++.||.|||+|.|.+.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~----------------------~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~   58 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGK----------------------IDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVE   58 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCC----------------------cCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEec
Confidence            789999999999998876553                      399999999988888887 5 4899999999999998


Q ss_pred             cC----CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          373 EE----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       373 ~~----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      ..    .+.|.|+|||.+.. .+|++||++.++++++..+
T Consensus        59 ~~~~~~~~~l~v~V~d~~~~-~~d~~iG~~~i~l~~l~~~   97 (124)
T cd04049          59 YPGWGGDTKLILRIMDKDNF-SDDDFIGEATIHLKGLFEE   97 (124)
T ss_pred             CcccCCCCEEEEEEEECccC-CCCCeEEEEEEEhHHhhhC
Confidence            76    46799999999886 5899999999999998653

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.54  E-value=7.9e-14  Score=124.54  Aligned_cols=100  Identities=30%  Similarity=0.492  Sum_probs=90.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCC-CCceeE
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      |+|+|++|++|+..+..+.+||||++.+++ ..++|+++ ++.+|.|||+|.|.+.. ....+.|+|||++.. ++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            578999999999888888999999999954 66899999 99999999999999886 467899999999987 899999


Q ss_pred             EEEEEcccccCCCeeeEEEeCCCC
Q 005736          566 SARVNLEGLVEGSVRDIWVPLEKV  589 (680)
Q Consensus       566 ~~~i~L~~l~~~~~~~~w~~L~~~  589 (680)
                      ++.+++.++..+.....|++|.+.
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~  104 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDGQ  104 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcCC
Confidence            999999999888888999999864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.54  E-value=4.1e-14  Score=131.68  Aligned_cols=97  Identities=28%  Similarity=0.468  Sum_probs=85.5

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------EEEeeecc-CCCCCeee
Q 005736          486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----------------------------IVQRTRTA-HSPNHVWN  535 (680)
Q Consensus       486 ~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----------------------------~~~~T~~~-~t~nP~wn  535 (680)
                      ..+.|.|+|++|+||...+..|.+||||++.++.                             ..++|+++ ++.||.||
T Consensus        26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn  105 (153)
T cd08676          26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN  105 (153)
T ss_pred             CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence            3569999999999999999899999999999842                             24789999 99999999


Q ss_pred             eEEEEEeeCC-ceEEEEEEEEecCCCCceeEEEEEEcccccCCCeeeEEEeC
Q 005736          536 QKFELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPL  586 (680)
Q Consensus       536 e~f~f~v~~~-~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L  586 (680)
                      |+|.|.+... ...|.|+|||++   +++||++.++++++.. ...+.||+|
T Consensus       106 E~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         106 ETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             cEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            9999999763 678999999997   8899999999999883 456899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.53  E-value=5.8e-14  Score=129.87  Aligned_cols=90  Identities=33%  Similarity=0.557  Sum_probs=83.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      |.|+|+|++|+||+..+. +.+||||+++++++.++|+++ ++.||.|||+|.|.+.++...|.|+|||++.+ +|++||
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            589999999999998886 889999999999999999999 99999999999999998888999999999988 899999


Q ss_pred             EEEEEcccccCCC
Q 005736          566 SARVNLEGLVEGS  578 (680)
Q Consensus       566 ~~~i~L~~l~~~~  578 (680)
                      ++.+++.++....
T Consensus        81 ~a~i~l~~l~~~~   93 (145)
T cd04038          81 EAEIDLEPLVEAA   93 (145)
T ss_pred             EEEEEHHHhhhhh
Confidence            9999999987543

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.53  E-value=4.6e-14  Score=129.84  Aligned_cols=100  Identities=26%  Similarity=0.529  Sum_probs=89.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CEEEeeecc-CCCCCeeeeEEEEEeeCC----------------ceE
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG----KIVQRTRTA-HSPNHVWNQKFELDEIGG----------------GEC  548 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~----~~~~~T~~~-~t~nP~wne~f~f~v~~~----------------~~~  548 (680)
                      |+|+|++|++|..+ ..+.+||||+++++    +..++|+++ ++.||.|||+|.|.+...                ...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999887 67899999999997    788999999 999999999999997653                458


Q ss_pred             EEEEEEEecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736          549 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  590 (680)
Q Consensus       549 L~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  590 (680)
                      |.|+|||++.. ++++||++.++|.++........||+|.+.+
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            99999999988 8999999999999988777788999998753

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.52  E-value=7.6e-14  Score=125.41  Aligned_cols=91  Identities=15%  Similarity=0.280  Sum_probs=80.4

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeecc-CCCCCCccceeEEEEEe
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDA-RPGSDPRWDSMFNMVLH  372 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v-~~t~nP~Wne~f~~~v~  372 (680)
                      |+|+|+|++|++|++.+..+.                      +||||.+.+++ ...+|++ +++.||.|||+|.|.+.
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~----------------------~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~   58 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGK----------------------IDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT   58 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCC----------------------cCCEEEEEECCEEeeceeEECCCcCCccCceEEEEec
Confidence            789999999999999886554                      39999999976 4678887 78999999999999988


Q ss_pred             cCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          373 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       373 ~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      ...+.|.|+|||++.. .+|++||++.+++.++...
T Consensus        59 ~~~~~L~v~v~d~~~~-~~d~~IG~~~~~l~~l~~~   93 (120)
T cd04045          59 SPNQKITLEVMDYEKV-GKDRSLGSVEINVSDLIKK   93 (120)
T ss_pred             CCCCEEEEEEEECCCC-CCCCeeeEEEEeHHHhhCC
Confidence            8778999999999986 5899999999999999754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.52  E-value=1.5e-13  Score=123.03  Aligned_cols=105  Identities=29%  Similarity=0.474  Sum_probs=85.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-CCce
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-GDEN  563 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~-~d~~  563 (680)
                      |.|+|++|+||+..   +.+||||+++++++ .++|+++ + .||.|||+|.|.+..   ....|.+.+||.+.. .+..
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            78999999999875   78999999999874 5899999 9 999999999999886   346788889998765 5566


Q ss_pred             eEEEEEEcccccCCCeeeEEEeCCCCC-----CeEEEEEEEE
Q 005736          564 MGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA  600 (680)
Q Consensus       564 iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~  600 (680)
                      +|.+.  +..+..+...+.||+|.+..     .|+|++.+.|
T Consensus        78 ~g~v~--l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          78 IGKVA--LSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEE--ecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            66655  45555566778999998643     6999998865

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.52  E-value=8e-14  Score=125.45  Aligned_cols=96  Identities=16%  Similarity=0.243  Sum_probs=80.3

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc------ceeeeecc-CCCCCC
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDA-RPGSDP  361 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~------~~~~~T~v-~~t~nP  361 (680)
                      .+.+..|.|.|+|++|+||++.+..|.                      +||||++.+-      ...++|++ +++.||
T Consensus         8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~----------------------~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nP   65 (124)
T cd08680           8 RYDSGDSSLVISVEQLRNLSALSIPEN----------------------SKVYVRVALLPCSSSTSCLFRTKALEDQDKP   65 (124)
T ss_pred             EECCCCCEEEEEEeEecCCcccccCCC----------------------CCeEEEEEEccCCCCCCceEEcCccCCCCCC
Confidence            444556999999999999999875554                      3999999974      23678998 799999


Q ss_pred             ccceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          362 RWDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       362 ~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      +|||+|.|.+...   ...|.|.|||++.. +++++||++.|+|+++..
T Consensus        66 vfnE~F~f~v~~~~L~~~~L~~~V~~~~~~-~~~~~lG~~~i~L~~~~~  113 (124)
T cd08680          66 VFNEVFRVPISSTKLYQKTLQVDVCSVGPD-QQEECLGGAQISLADFES  113 (124)
T ss_pred             ccccEEEEECCHHHhhcCEEEEEEEeCCCC-CceeEEEEEEEEhhhccC
Confidence            9999999998753   45799999999876 689999999999999853

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.52  E-value=6.4e-14  Score=130.21  Aligned_cols=103  Identities=8%  Similarity=0.135  Sum_probs=79.5

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC-
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE-  374 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~-  374 (680)
                      |.|+|++|++|+++|..+....++ . .      ..-....+||||++.++++..+|++ +++.||+|||+|.|.+... 
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~-~-~------~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~   73 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKK-A-F------LGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPP   73 (151)
T ss_pred             eEEEEEEeCCCCccChhhhcccee-c-c------ccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCC
Confidence            789999999999998544100000 0 0      0000113599999999999999998 8999999999999997643 


Q ss_pred             -CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          375 -TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       375 -~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                       .+.|.|+|||+|.. ++|++||++.+++.++...
T Consensus        74 ~~~~l~~~v~D~d~~-~~dd~iG~~~l~l~~l~~~  107 (151)
T cd04018          74 LCERIKIQIRDWDRV-GNDDVIGTHFIDLSKISNS  107 (151)
T ss_pred             cCCEEEEEEEECCCC-CCCCEEEEEEEeHHHhccC
Confidence             56899999999986 5999999999999998643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.52  E-value=7.5e-14  Score=129.89  Aligned_cols=89  Identities=15%  Similarity=0.309  Sum_probs=77.0

Q ss_pred             cCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc----------------------
Q 005736          291 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE----------------------  348 (680)
Q Consensus       291 ~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~----------------------  348 (680)
                      .++.+.|.|+|++|++|.+.|..|.+                      ||||++.++.                      
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~g~~----------------------DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVNGFS----------------------DPYCMLGIVPASRERNSEKSKKRKSHRKKAVL   81 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCCCCC----------------------CceEEEEEcccccccccccccccccccccccc
Confidence            45679999999999999999876653                      9999999863                      


Q ss_pred             -------eeeeecc-CCCCCCccceeEEEEEecC-CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          349 -------LTRRTDA-RPGSDPRWDSMFNMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       349 -------~~~~T~v-~~t~nP~Wne~f~~~v~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                             ...+|.+ ++++||.|||+|.|.+.+. .+.|.|+|||++     |++||++.+++.++.
T Consensus        82 ~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~  143 (153)
T cd08676          82 KDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLP  143 (153)
T ss_pred             cccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhC
Confidence                   2367887 7899999999999999875 578999999976     799999999999986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.52  E-value=1.4e-13  Score=126.26  Aligned_cols=89  Identities=19%  Similarity=0.417  Sum_probs=79.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CEEEeeecc-CCCCCeeeeEEEEEeeC-----CceEEEEEEE
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-------KIVQRTRTA-HSPNHVWNQKFELDEIG-----GGECLMVKCY  554 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-------~~~~~T~~~-~t~nP~wne~f~f~v~~-----~~~~L~i~V~  554 (680)
                      +.|.|+|++|++|+..+..+.+||||+|++.       ...++|+++ ++.||.|||+|.|.+..     ....|.|+||
T Consensus        16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~   95 (133)
T cd04009          16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK   95 (133)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence            3799999999999998888999999999994       357899999 99999999999999875     2458999999


Q ss_pred             EecCC-CCceeEEEEEEcccccC
Q 005736          555 NEEIF-GDENMGSARVNLEGLVE  576 (680)
Q Consensus       555 d~~~~-~d~~iG~~~i~L~~l~~  576 (680)
                      |++.. ++++||++.++|+++..
T Consensus        96 d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          96 DYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             ecCCCCCCcEeEEEEEeHHHCCc
Confidence            99988 79999999999999873

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.52  E-value=3.8e-14  Score=129.76  Aligned_cols=73  Identities=23%  Similarity=0.171  Sum_probs=64.9

Q ss_pred             CeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccC--CCCCCCEEEEEECC-----eEEeeeeeecCCC
Q 005736          591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL--RGTSDPYVKVQYGD-----LKKRTKLTVACLS  663 (680)
Q Consensus       591 ~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~--~g~~DPyV~v~lg~-----~~~kT~~~k~tln  663 (680)
                      .|+|+++++|.              +..+.|.|.|++|+||+.++.  .+.+||||+|++..     .++||+++++++|
T Consensus         1 ~Gel~~sL~Y~--------------~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~n   66 (138)
T cd08407           1 TGEVLLSISYL--------------PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKIN   66 (138)
T ss_pred             CCEEEEEEEEe--------------CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCC
Confidence            49999999998              888999999999999999983  35599999999953     3779999999999


Q ss_pred             CcccceeEEEecCC
Q 005736          664 GHIQNSKSSMASNL  677 (680)
Q Consensus       664 P~wnE~f~f~V~n~  677 (680)
                      |+|||+|.|.|...
T Consensus        67 PvfNE~f~F~v~~~   80 (138)
T cd08407          67 PVWNEMIMFELPSE   80 (138)
T ss_pred             CccccEEEEECCHH
Confidence            99999999999763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.51  E-value=5.4e-14  Score=133.04  Aligned_cols=95  Identities=17%  Similarity=0.207  Sum_probs=79.3

Q ss_pred             cCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCccc
Q 005736          291 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPRWD  364 (680)
Q Consensus       291 ~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wn  364 (680)
                      ....|.|.|+|++|++|++.+..|.                      +||||++.+.     ...++|++ +++.||+||
T Consensus        23 ~~~~g~L~V~Vi~A~nL~~~d~~g~----------------------~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn   80 (162)
T cd04020          23 KPSTGELHVWVKEAKNLPALKSGGT----------------------SDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN   80 (162)
T ss_pred             CCCCceEEEEEEeeeCCCCCCCCCC----------------------CCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence            3457999999999999999886554                      3999999883     35789998 799999999


Q ss_pred             eeEEEEEec---C-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          365 SMFNMVLHE---E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       365 e~f~~~v~~---~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      |+|.|.+..   . ...|.|+|||+|.. ++|++||++.++++++...
T Consensus        81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~-~~d~~lG~v~i~l~~~~~~  127 (162)
T cd04020          81 HTFVYDGVSPEDLSQACLELTVWDHDKL-SSNDFLGGVRLGLGTGKSY  127 (162)
T ss_pred             CEEEEecCCHHHhCCCEEEEEEEeCCCC-CCCceEEEEEEeCCccccC
Confidence            999998532   2 34799999999986 5899999999999998643

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.51  E-value=5.7e-14  Score=129.42  Aligned_cols=99  Identities=23%  Similarity=0.348  Sum_probs=85.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|+||+..+..+.+||||++++.  +   ...+|+++ ++.||.|||+|.|.+..   ....|.|+|||++.
T Consensus        15 ~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~   94 (136)
T cd08404          15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR   94 (136)
T ss_pred             CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC
Confidence            3799999999999999888999999999982  2   36789999 99999999999999875   35679999999998


Q ss_pred             C-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                      . ++++||++.+++..  .+....+|++|..
T Consensus        95 ~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~  123 (136)
T cd08404          95 VTKNEVIGRLVLGPKA--SGSGGHHWKEVCN  123 (136)
T ss_pred             CCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence            8 89999999999998  3445678888754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.51  E-value=1.6e-13  Score=124.44  Aligned_cols=96  Identities=15%  Similarity=0.209  Sum_probs=79.5

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWD  364 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wn  364 (680)
                      .+....+.|.|+|++|++|+..+..+.                      +||||++.+.   ....+|++ +++.||.||
T Consensus        10 ~y~~~~~~L~v~v~~a~~L~~~d~~~~----------------------~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wn   67 (125)
T cd08386          10 SYDFQESTLTLKILKAVELPAKDFSGT----------------------SDPFVKIYLLPDKKHKLETKVKRKNLNPHWN   67 (125)
T ss_pred             EECCCCCEEEEEEEEecCCCCccCCCC----------------------CCceEEEEECCCCCcceeeeeecCCCCCccc
Confidence            334456899999999999999886654                      3999999983   46788998 799999999


Q ss_pred             eeEEEEEec---C-CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          365 SMFNMVLHE---E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       365 e~f~~~v~~---~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      |+|.|.+..   . ...|.++|||+|.. +++++||++.++++++..
T Consensus        68 e~f~f~~~~~~~l~~~~l~~~v~d~d~~-~~~~~iG~~~i~l~~l~~  113 (125)
T cd08386          68 ETFLFEGFPYEKLQQRVLYLQVLDYDRF-SRNDPIGEVSLPLNKVDL  113 (125)
T ss_pred             eeEEEcccCHHHhCCCEEEEEEEeCCCC-cCCcEeeEEEEecccccC
Confidence            999997533   2 35799999999986 689999999999999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.50  E-value=1.3e-13  Score=125.52  Aligned_cols=97  Identities=14%  Similarity=0.146  Sum_probs=80.4

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~  362 (680)
                      .+.+..+.|.|+|++|++|+..+..+.                      +||||++.+.     ...++|++ +++.||+
T Consensus        10 ~y~~~~~~L~V~vi~a~~L~~~~~~~~----------------------~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~   67 (127)
T cd04030          10 RYSSQRQKLIVTVHKCRNLPPCDSSDI----------------------PDPYVRLYLLPDKSKSTRRKTSVKKDNLNPV   67 (127)
T ss_pred             EEeCCCCEEEEEEEEEECCCCccCCCC----------------------CCceEEEEEEcCCCCCceEecccccCCCCCE
Confidence            344455999999999999999986554                      3999999985     35789998 7899999


Q ss_pred             cceeEEEEEecC---CCeEEEEEEEeCCCC-CCCceeEEEEEecccccC
Q 005736          363 WDSMFNMVLHEE---TGTVRFNLYECIPGH-VKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~-~~d~~lG~~~i~l~~l~~  407 (680)
                      |||+|.|.+...   ...|.+.|||.+... ++|++||++.++|.++..
T Consensus        68 wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~  116 (127)
T cd04030          68 FDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDL  116 (127)
T ss_pred             ECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccc
Confidence            999999998653   467999999988641 489999999999999853

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.50  E-value=1.6e-13  Score=123.82  Aligned_cols=88  Identities=26%  Similarity=0.381  Sum_probs=78.9

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC--CceEEEEEEEEecCC-CCc
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVKCYNEEIF-GDE  562 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~--~~~~L~i~V~d~~~~-~d~  562 (680)
                      .+.|+|+|++|++|+. +..+.+||||+|+++++.++|+++ ++.||+|||+|.|....  ....|.|+|||++.. +|+
T Consensus        27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd  105 (127)
T cd04032          27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDD  105 (127)
T ss_pred             cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCC
Confidence            4699999999999974 566889999999999899999999 99999999999997433  477999999999988 999


Q ss_pred             eeEEEEEEccccc
Q 005736          563 NMGSARVNLEGLV  575 (680)
Q Consensus       563 ~iG~~~i~L~~l~  575 (680)
                      +||++.++|....
T Consensus       106 ~IG~~~i~l~~~~  118 (127)
T cd04032         106 LLGTCSVVPEAGV  118 (127)
T ss_pred             eeEEEEEEecCCc
Confidence            9999999999765

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.50  E-value=3.9e-13  Score=122.35  Aligned_cols=108  Identities=15%  Similarity=0.304  Sum_probs=87.3

Q ss_pred             EEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEecC---CC
Q 005736          301 VISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHEE---TG  376 (680)
Q Consensus       301 v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~~---~~  376 (680)
                      |++|++|++  ..|.                      +||||++.+++..++|++ +++.||+|||+|.|.+...   .+
T Consensus         2 vi~a~~L~~--~~g~----------------------~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~   57 (127)
T cd08373           2 VVSLKNLPG--LKGK----------------------GDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDE   57 (127)
T ss_pred             eEEeeCCcc--cCCC----------------------CCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCC
Confidence            678999988  3443                      399999999999999998 7999999999999999753   57


Q ss_pred             eEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc----eeeEEEEEE
Q 005736          377 TVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN----SGELTVRLV  452 (680)
Q Consensus       377 ~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~----~G~l~~~l~  452 (680)
                      .|.|+|||++.. .+|++||++.++++++...                      .....|++|.+.+    .|++++++.
T Consensus        58 ~l~~~v~d~~~~-~~d~~iG~~~~~l~~l~~~----------------------~~~~~~~~L~~~~~~~~~~~l~l~~~  114 (127)
T cd08373          58 SLEIVVKDYEKV-GRNRLIGSATVSLQDLVSE----------------------GLLEVTEPLLDSNGRPTGATISLEVS  114 (127)
T ss_pred             EEEEEEEECCCC-CCCceEEEEEEEhhHcccC----------------------CceEEEEeCcCCCCCcccEEEEEEEE
Confidence            899999999986 5899999999999998643                      2345677775332    578888886


Q ss_pred             Eee
Q 005736          453 LKE  455 (680)
Q Consensus       453 l~~  455 (680)
                      +.+
T Consensus       115 ~~~  117 (127)
T cd08373         115 YQP  117 (127)
T ss_pred             EeC
Confidence            643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.50  E-value=1.5e-13  Score=124.38  Aligned_cols=96  Identities=19%  Similarity=0.235  Sum_probs=78.3

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeeccCCCCCCccce
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDARPGSDPRWDS  365 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v~~t~nP~Wne  365 (680)
                      .+.+..+.|.|+|++|+||++.+..|.                      .||||.+.+.   .+.++|+++++.||+|||
T Consensus        10 ~Y~~~~~~L~V~Vi~a~nL~~~~~~~~----------------------~d~yVk~~llp~~~~~~kTkv~~~~nP~fnE   67 (124)
T cd08389          10 EYDPSARKLTVTVIRAQDIPTKDRGGA----------------------SSWQVHLVLLPSKKQRAKTKVQRGPNPVFNE   67 (124)
T ss_pred             EECCCCCEEEEEEEEecCCCchhcCCC----------------------CCcEEEEEEccCCcceeecccccCCCCcccC
Confidence            444556899999999999999986554                      3999998763   457788884449999999


Q ss_pred             eEEEE-EecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          366 MFNMV-LHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       366 ~f~~~-v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      +|.|. +...   ...|.|.|||++.. +++++||++.++|+++..
T Consensus        68 ~F~f~~i~~~~l~~~~L~~~V~~~~~~-~~~~~lG~~~i~L~~l~~  112 (124)
T cd08389          68 TFTFSRVEPEELNNMALRFRLYGVERM-RKERLIGEKVVPLSQLNL  112 (124)
T ss_pred             EEEECCCCHHHhccCEEEEEEEECCCc-ccCceEEEEEEeccccCC
Confidence            99998 6542   45799999999986 689999999999999954

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.50  E-value=1.8e-13  Score=123.83  Aligned_cols=95  Identities=13%  Similarity=0.219  Sum_probs=78.7

Q ss_pred             cccCcCeEEEEEEEecCCCCCCC-CCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCC
Q 005736          289 RKKAVGGIVYVRVISASKLSRSS-LRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDP  361 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d-~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP  361 (680)
                      .+....|.|.|+|++|++|+..+ ..+.                      +||||++.+..     ..++|++ +++.||
T Consensus         8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~----------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P   65 (123)
T cd08521           8 SYNYKTGSLEVHIKECRNLAYADEKKKR----------------------SNPYVKVYLLPDKSKQSKRKTSVKKNTTNP   65 (123)
T ss_pred             EEeCCCCEEEEEEEEecCCCCcCCCCCC----------------------CCcEEEEEEecCCCcCceeeccccCCCCCC
Confidence            33345599999999999999987 4443                      39999998841     4578888 789999


Q ss_pred             ccceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          362 RWDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       362 ~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      +|||+|.|.+...   ...|.|+|||++.. +++++||++.++|+++.
T Consensus        66 ~wne~f~f~i~~~~l~~~~l~i~v~d~~~~-~~~~~iG~~~i~l~~l~  112 (123)
T cd08521          66 VFNETLKYHISKSQLETRTLQLSVWHHDRF-GRNTFLGEVEIPLDSWD  112 (123)
T ss_pred             cccceEEEeCCHHHhCCCEEEEEEEeCCCC-cCCceeeEEEEeccccc
Confidence            9999999998763   45799999999876 58999999999999985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.50  E-value=4.2e-13  Score=123.68  Aligned_cols=99  Identities=21%  Similarity=0.348  Sum_probs=82.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|++|+..+..+.+||||++++.  +   ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~   94 (136)
T cd08402          15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR   94 (136)
T ss_pred             CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC
Confidence            4899999999999998888999999999993  2   46789999 999999999999998743   3489999999998


Q ss_pred             C-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                      . ++++||++.+++...  +.....|+++-.
T Consensus        95 ~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~  123 (136)
T cd08402          95 IGKNDPIGKVVLGCNAT--GAELRHWSDMLA  123 (136)
T ss_pred             CCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence            8 889999999999763  333455655543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.50  E-value=2.2e-13  Score=123.26  Aligned_cols=96  Identities=16%  Similarity=0.174  Sum_probs=79.5

Q ss_pred             cccCcCeEEEEEEEecCCCCCCC-CCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCcc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSS-LRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRW  363 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d-~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~W  363 (680)
                      ++....+.|.|+|++|++|+..+ ..+.                      +||||++.+.   ...++|++ +++.||+|
T Consensus         8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~----------------------~dpyV~v~l~~~~~~~~~T~v~~~~~~P~w   65 (123)
T cd08390           8 QYDLEEEQLTVSLIKARNLPPRTKDVAH----------------------CDPFVKVCLLPDERRSLQSKVKRKTQNPNF   65 (123)
T ss_pred             EECCCCCEEEEEEEEecCCCCccCCCCC----------------------CCcEEEEEEeeCCCCceEeeeEcCCCCCcc
Confidence            44445689999999999999987 3443                      4999999984   34678887 79999999


Q ss_pred             ceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          364 DSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       364 ne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      ||+|.|.+...   ...|.|.|||++.. +++++||++.++|+++..
T Consensus        66 ne~f~f~i~~~~l~~~~l~i~v~d~~~~-~~~~~iG~~~i~L~~l~~  111 (123)
T cd08390          66 DETFVFQVSFKELQRRTLRLSVYDVDRF-SRHCIIGHVLFPLKDLDL  111 (123)
T ss_pred             ceEEEEEcCHHHhcccEEEEEEEECCcC-CCCcEEEEEEEeccceec
Confidence            99999998763   34799999999885 589999999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.50  E-value=1.5e-13  Score=125.82  Aligned_cols=93  Identities=14%  Similarity=0.141  Sum_probs=76.3

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~  362 (680)
                      .+.+..+.|.|+|++|+||+..|..|.                      +||||++.+..     .+++|++ ++++||+
T Consensus         9 ~Y~~~~~~L~V~Vi~A~nL~~~~~~g~----------------------~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~   66 (136)
T cd08406           9 SYLPTAERLTVVVVKARNLVWDNGKTT----------------------ADPFVKVYLLQDGRKISKKKTSVKRDDTNPI   66 (136)
T ss_pred             EEcCCCCEEEEEEEEeeCCCCccCCCC----------------------CCeEEEEEEEeCCccccccCCccccCCCCCe
Confidence            344445899999999999999886554                      39999999842     2567887 7999999


Q ss_pred             cceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736          363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY  404 (680)
Q Consensus       363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~  404 (680)
                      |||+|.|.+...   ...|.|+|||+|.. +++++||++.+....
T Consensus        67 ~nE~f~F~v~~~~l~~~~l~~~V~~~d~~-~~~~~iG~v~lg~~~  110 (136)
T cd08406          67 FNEAMIFSVPAIVLQDLSLRVTVAESTED-GKTPNVGHVIIGPAA  110 (136)
T ss_pred             eceeEEEECCHHHhCCcEEEEEEEeCCCC-CCCCeeEEEEECCCC
Confidence            999999998753   45799999999986 699999999997654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.50  E-value=4.4e-13  Score=121.23  Aligned_cols=99  Identities=26%  Similarity=0.425  Sum_probs=84.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d~~  557 (680)
                      +.|.|+|++|++|+..+..+.+||||++++.     ....+|+++ ++.||.|||+|.|....    ....+.|+|||++
T Consensus        15 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~   94 (123)
T cd04035          15 SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDED   94 (123)
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcC
Confidence            4899999999999988888899999999982     257899999 99999999999996432    2468999999998


Q ss_pred             CCCCceeEEEEEEcccccCCCeeeEEEeC
Q 005736          558 IFGDENMGSARVNLEGLVEGSVRDIWVPL  586 (680)
Q Consensus       558 ~~~d~~iG~~~i~L~~l~~~~~~~~w~~L  586 (680)
                      ..++++||++.++|+++..++....|+.|
T Consensus        95 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~  123 (123)
T cd04035          95 RFGNDFLGETRIPLKKLKPNQTKQFNICL  123 (123)
T ss_pred             CcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence            76788999999999999887776666543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.49  E-value=1.7e-13  Score=124.29  Aligned_cols=90  Identities=20%  Similarity=0.391  Sum_probs=78.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeecc-C-CCCCCccceeEEEEEe
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDA-R-PGSDPRWDSMFNMVLH  372 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v-~-~t~nP~Wne~f~~~v~  372 (680)
                      .|+|+|++|++|+..+..+.                      +||||++.++. +..+|++ + ++.||.|||+|.|.+.
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~----------------------~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~   58 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGK----------------------MKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLD   58 (125)
T ss_pred             CEEEEEEEcccCCCCCcccC----------------------CceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcC
Confidence            38999999999998875553                      39999999987 8889987 4 5899999999999998


Q ss_pred             cC-----CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          373 EE-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       373 ~~-----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      +.     ...|.|+|||++.. .+|++||++.+++.++...
T Consensus        59 ~~~~~~~~~~l~~~v~d~~~~-~~~~~lG~~~i~l~~l~~~   98 (125)
T cd04051          59 ERLLQQGRLALTIEVYCERPS-LGDKLIGEVRVPLKDLLDG   98 (125)
T ss_pred             hHhcccCccEEEEEEEECCCC-CCCCcEEEEEEEHHHhhcc
Confidence            76     56899999999875 5899999999999999754

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.49  E-value=4.8e-13  Score=122.42  Aligned_cols=108  Identities=19%  Similarity=0.316  Sum_probs=89.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------------CEEEeeecc-CCCCCee-eeEEEEEeeCCceEEEEEE
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-------------KIVQRTRTA-HSPNHVW-NQKFELDEIGGGECLMVKC  553 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-------------~~~~~T~~~-~t~nP~w-ne~f~f~v~~~~~~L~i~V  553 (680)
                      ...|++++|+||+ ++..|.+||||++++.             ++.++|+++ ++.||.| ||+|.|.+. ..+.|.|+|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence            4689999999998 6778999999999993             247899999 9999999 999999986 456899999


Q ss_pred             EEecCC-C---CceeEEEEEEcccccCC---CeeeEEEeCCCCC-----CeEEEEEE
Q 005736          554 YNEEIF-G---DENMGSARVNLEGLVEG---SVRDIWVPLEKVN-----TGELRLQI  598 (680)
Q Consensus       554 ~d~~~~-~---d~~iG~~~i~L~~l~~~---~~~~~w~~L~~~~-----~G~i~l~l  598 (680)
                      ||++.. +   +++||++.+++.++...   .....||+|+...     +|+|.+.+
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            998653 2   79999999999998754   3467899998643     47777764

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>PLN03008 Phospholipase D delta

Probab=99.49  E-value=3.7e-13  Score=151.25  Aligned_cols=101  Identities=21%  Similarity=0.427  Sum_probs=90.3

Q ss_pred             CCCCcEEEEEECCE-EEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeEEEEEEcccccCCCeeeEEE
Q 005736          507 GKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWV  584 (680)
Q Consensus       507 ~~~dpyv~v~l~~~-~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~  584 (680)
                      +.+||||+|.++++ ..||+++ ++.||+|||+|.|.+.++...|.|+|||++.+++++||++.|||+++..+...+.|+
T Consensus        75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl  154 (868)
T PLN03008         75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWF  154 (868)
T ss_pred             CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEE
Confidence            46799999999764 6799999 999999999999999988889999999999987899999999999999998899999


Q ss_pred             eCCCC------CCeEEEEEEEEEEecCCC
Q 005736          585 PLEKV------NTGELRLQIEATRVDDNE  607 (680)
Q Consensus       585 ~L~~~------~~G~i~l~l~~~~~~~~~  607 (680)
                      +|.+.      ..|+|+++++|.++....
T Consensus       155 ~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~  183 (868)
T PLN03008        155 PVLGASGKPPKAETAIFIDMKFTPFDQIH  183 (868)
T ss_pred             EccccCCCCCCCCcEEEEEEEEEEccccc
Confidence            99763      358999999999887543

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.49  E-value=8.4e-14  Score=128.21  Aligned_cols=99  Identities=14%  Similarity=0.231  Sum_probs=81.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|+||+..+ .+.+||||++++.  .   ..++|+++ ++.||.|||+|.|.+..   ....|.|+|||++.
T Consensus        15 ~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~   93 (137)
T cd08409          15 NRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG   93 (137)
T ss_pred             CeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC
Confidence            48999999999999888 7889999999983  2   46789999 99999999999999874   25689999999998


Q ss_pred             C-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          559 F-GDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      . ++++||++.++......+...++|..+-
T Consensus        94 ~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~  123 (137)
T cd08409          94 VRKSKLLGRVVLGPFMYARGKELEHWNDML  123 (137)
T ss_pred             CCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence            7 8999999999976544444445565544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.49  E-value=8.6e-14  Score=127.87  Aligned_cols=101  Identities=22%  Similarity=0.407  Sum_probs=88.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|+||+..+..+.+||||++++..     ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||.+.
T Consensus        14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~   93 (134)
T cd00276          14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS   93 (134)
T ss_pred             CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC
Confidence            48999999999999888888999999999943     36799999 999999999999998764   5789999999998


Q ss_pred             C-CCceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736          559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  590 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  590 (680)
                      . ++++||.+.+++++  .+...++|++|....
T Consensus        94 ~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~  124 (134)
T cd00276          94 VGRNEVIGQVVLGPDS--GGEELEHWNEMLASP  124 (134)
T ss_pred             CCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence            6 88999999999999  555668899887654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.49  E-value=3.9e-13  Score=123.85  Aligned_cols=98  Identities=19%  Similarity=0.355  Sum_probs=81.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~---~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|+||+..+..+.+||||++++  ++   ...+|+++ ++.||.|||+|.|.+..   ....|.|+|||++.
T Consensus        15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~   94 (136)
T cd08405          15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR   94 (136)
T ss_pred             CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC
Confidence            489999999999998888899999999998  22   46789999 99999999999999764   24689999999998


Q ss_pred             C-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          559 F-GDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      . ++++||++.+++.+.  +...+.|+++-
T Consensus        95 ~~~~~~lG~~~i~~~~~--~~~~~~w~~~~  122 (136)
T cd08405          95 LSRNDLIGKIYLGWKSG--GLELKHWKDML  122 (136)
T ss_pred             CCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence            8 889999999999875  33344555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.49  E-value=4e-13  Score=121.75  Aligned_cols=108  Identities=25%  Similarity=0.405  Sum_probs=88.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      .|.|+|.+|+ |...+..+.+||||+++++++ ..+|+++ ++.||.|||.|.|.+. ..+.|.|+|||++.. .+++||
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG   80 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG   80 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence            6999999998 544555788999999999876 8999999 9999999999999986 457899999999988 899999


Q ss_pred             EEEEEcccccCCCe-----eeEEEeCCCCC------CeEEEEEE
Q 005736          566 SARVNLEGLVEGSV-----RDIWVPLEKVN------TGELRLQI  598 (680)
Q Consensus       566 ~~~i~L~~l~~~~~-----~~~w~~L~~~~------~G~i~l~l  598 (680)
                      ++.++|.++.....     ...|++|....      .|+|.+.+
T Consensus        81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          81 EASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            99999999874322     23588886433      57776654

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.48  E-value=7e-13  Score=122.02  Aligned_cols=100  Identities=20%  Similarity=0.303  Sum_probs=82.6

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C---EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEe
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---K---IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNE  556 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~---~---~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~  556 (680)
                      .+.|.|+|++|+||+..+..+.+||||++++.   +   .+.+|+++ ++.||+|||+|.|.+..   ....|.|+|||+
T Consensus        14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~   93 (138)
T cd08408          14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK   93 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence            34899999999999999888999999999992   2   35799999 99999999999999875   356999999999


Q ss_pred             cCC-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          557 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       557 ~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      +.. ++++||++.+++...-. ...++|+.+.
T Consensus        94 ~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l  124 (138)
T cd08408          94 RKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMK  124 (138)
T ss_pred             CCCCCCcEEEEEEECCcCCCc-hHHHHHHHHH
Confidence            987 89999999999875321 2234566553

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.1e-14  Score=144.86  Aligned_cols=175  Identities=24%  Similarity=0.322  Sum_probs=141.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEE--eeCC--ceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELD--EIGG--GECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~--v~~~--~~~L~i~V~d~~  557 (680)
                      ..+..+|..|++|.+++..+..|||++..+..     .+.+|++. ++.||.|+|+-...  ..+.  ...+++.|+|.+
T Consensus        93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~  172 (362)
T KOG1013|consen   93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND  172 (362)
T ss_pred             hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence            37899999999999999999999999999832     45888999 99999999875554  3332  557889999999


Q ss_pred             CC-CCceeEEEEEEcccccCCCee--eEEEeCC----C------CCCeEEEEEEEEEEecCCCCCCCccCCCCCceEEEE
Q 005736          558 IF-GDENMGSARVNLEGLVEGSVR--DIWVPLE----K------VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELV  624 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~~~~~--~~w~~L~----~------~~~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~  624 (680)
                      .+ .++++|+..+++..+...+..  ..|+.-+    .      ...|++.+++.|-              ....-+.|.
T Consensus       173 ~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--------------s~~~~l~vt  238 (362)
T KOG1013|consen  173 KKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS--------------STTPGLIVT  238 (362)
T ss_pred             ccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC--------------cCCCceEEE
Confidence            88 889999999888877643321  2232211    0      2368898988775              455679999


Q ss_pred             EEEeecCccccCCCCCCCEEEEEECC-----eEEeeeeeecCCCCcccceeEEEecC
Q 005736          625 IVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKLTVACLSGHIQNSKSSMASN  676 (680)
Q Consensus       625 I~~a~~L~~~d~~g~~DPyV~v~lg~-----~~~kT~~~k~tlnP~wnE~f~f~V~n  676 (680)
                      +.+|.+|..+|.+|.+||||+..+..     .++||.++|+|+||+|||.|.|.+.+
T Consensus       239 ~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~p  295 (362)
T KOG1013|consen  239 IIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGP  295 (362)
T ss_pred             EEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCc
Confidence            99999999999999999999999942     48899999999999999999997754

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.48  E-value=2.7e-14  Score=145.97  Aligned_cols=105  Identities=30%  Similarity=0.496  Sum_probs=94.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEEeeC--CceEEEEEEEEecCC-
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVKCYNEEIF-  559 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~v~~--~~~~L~i~V~d~~~~-  559 (680)
                      .|.|+|.+|+||.++|.+|.+||||++.+     +..+++|+++ .++||+|||+|.|.+..  ....|.|+|||+|.. 
T Consensus       181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs  260 (683)
T KOG0696|consen  181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS  260 (683)
T ss_pred             eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence            79999999999999999999999999999     3478899999 99999999999999875  377999999999998 


Q ss_pred             CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEE
Q 005736          560 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGEL  594 (680)
Q Consensus       560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i  594 (680)
                      +++|||+.++.++++...+ .+.||.|-....|+-
T Consensus       261 RNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGEy  294 (683)
T KOG0696|consen  261 RNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGEY  294 (683)
T ss_pred             cccccceecccHHHHhhcc-hhhHHHHhhhhcCce
Confidence            9999999999999987554 568999987777764

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.48  E-value=2.3e-13  Score=124.87  Aligned_cols=93  Identities=15%  Similarity=0.251  Sum_probs=78.1

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~  362 (680)
                      .+.+..|.|.|+|++|++|++.|..|.                      +||||++.+..     ..++|++ +++.||+
T Consensus         7 ~y~~~~~~L~V~Vi~a~~L~~~d~~~~----------------------~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~   64 (133)
T cd08384           7 MYNTQRRGLIVGIIRCVNLAAMDANGY----------------------SDPFVKLYLKPDAGKKSKHKTQVKKKTLNPE   64 (133)
T ss_pred             EEcCCCCEEEEEEEEEcCCCCcCCCCC----------------------CCcEEEEEEEcCCCccCCceeeeEeccCCCC
Confidence            344455999999999999999887654                      39999999852     3578888 7999999


Q ss_pred             cceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736          363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY  404 (680)
Q Consensus       363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~  404 (680)
                      |||+|.|.+...   ...|.|+|||+|.. .+|++||++.+++..
T Consensus        65 wne~f~f~~~~~~l~~~~l~~~V~d~d~~-~~~~~lG~~~i~l~~  108 (133)
T cd08384          65 FNEEFFYDIKHSDLAKKTLEITVWDKDIG-KSNDYIGGLQLGINA  108 (133)
T ss_pred             cccEEEEECCHHHhCCCEEEEEEEeCCCC-CCccEEEEEEEecCC
Confidence            999999998753   35799999999986 589999999999975

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.47  E-value=7.4e-13  Score=121.71  Aligned_cols=100  Identities=20%  Similarity=0.364  Sum_probs=80.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~---~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|++|+..+..+.+||||++++  +.   ...+|+++ ++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~   93 (135)
T cd08410          14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV   93 (135)
T ss_pred             CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence            489999999999999988899999999998  22   46789999 999999999999998642   4479999999998


Q ss_pred             C-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                      . ++++||++.+...... ....++|+.|..
T Consensus        94 ~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~  123 (135)
T cd08410          94 KSSNDFIGRIVIGQYSSG-PSETNHWRRMLN  123 (135)
T ss_pred             CCCCcEEEEEEEcCccCC-chHHHHHHHHHh
Confidence            7 8999999987654332 222356666544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.47  E-value=9.1e-14  Score=127.58  Aligned_cols=100  Identities=22%  Similarity=0.390  Sum_probs=85.4

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEec
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  557 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~  557 (680)
                      .+.|.|+|++|+||+..+..+.+||||++++.     ....+|+++ ++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d   91 (133)
T cd08384          12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD   91 (133)
T ss_pred             CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence            35899999999999999888899999999993     257899999 999999999999998753   568999999998


Q ss_pred             CC-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                      .. ++++||++.+++..  .++...+|+++..
T Consensus        92 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~  121 (133)
T cd08384          92 IGKSNDYIGGLQLGINA--KGERLRHWLDCLK  121 (133)
T ss_pred             CCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence            87 88999999999986  3445567887644

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.47  E-value=3e-13  Score=124.05  Aligned_cols=92  Identities=20%  Similarity=0.208  Sum_probs=78.6

Q ss_pred             CcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-------ceeeeecc-CCCCCCcc
Q 005736          292 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-------ELTRRTDA-RPGSDPRW  363 (680)
Q Consensus       292 ~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-------~~~~~T~v-~~t~nP~W  363 (680)
                      ...+.|+|+|++|++|++.+..|.                      +||||++.+.       ...++|++ +++.||+|
T Consensus        13 ~~~~~L~V~Vi~A~~L~~~~~~g~----------------------~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~w   70 (133)
T cd04009          13 ASEQSLRVEILNARNLLPLDSNGS----------------------SDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLF   70 (133)
T ss_pred             CCCCEEEEEEEEeeCCCCcCCCCC----------------------CCCEEEEEEECCCcCccccccccccCcCCCCCcc
Confidence            345899999999999999876554                      3999999986       34678888 79999999


Q ss_pred             ceeEEEEEecC-----CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          364 DSMFNMVLHEE-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       364 ne~f~~~v~~~-----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      ||+|.|.+...     ...|.|+|||+|.. ++|++||++.++|+++.
T Consensus        71 nE~f~f~i~~~~~~~~~~~l~~~V~d~d~~-~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          71 DESFEFNVPPEQCSVEGALLLFTVKDYDLL-GSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             CCEEEEEechhhcccCCCEEEEEEEecCCC-CCCcEeEEEEEeHHHCC
Confidence            99999998752     34799999999986 58999999999999986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.47  E-value=6.4e-13  Score=119.93  Aligned_cols=88  Identities=16%  Similarity=0.306  Sum_probs=75.1

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CC--EEEeeecc-CCC-CCeeeeEEEEEeeCC--ceEEEEEEEEe
Q 005736          486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GK--IVQRTRTA-HSP-NHVWNQKFELDEIGG--GECLMVKCYNE  556 (680)
Q Consensus       486 ~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~--~~~~T~~~-~t~-nP~wne~f~f~v~~~--~~~L~i~V~d~  556 (680)
                      +.+.|.|.|++|+||++.+..+.+||||+|++   ++  .+.+|+++ +|. ||.|||+|.|.+..+  +..|.|+|||+
T Consensus        12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~   91 (135)
T cd08692          12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR   91 (135)
T ss_pred             cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence            44689999999999998765677899999998   22  57889999 885 699999999999863  45788999999


Q ss_pred             cCC-CCceeEEEEEEccc
Q 005736          557 EIF-GDENMGSARVNLEG  573 (680)
Q Consensus       557 ~~~-~d~~iG~~~i~L~~  573 (680)
                      +.. ++++||++.++.+.
T Consensus        92 ~~~~~n~~IG~v~lG~~~  109 (135)
T cd08692          92 SSVRRKHFLGQVWISSDS  109 (135)
T ss_pred             CCCcCCceEEEEEECCcc
Confidence            887 89999999999976

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.46  E-value=2.1e-13  Score=125.35  Aligned_cols=99  Identities=21%  Similarity=0.396  Sum_probs=81.8

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEec
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  557 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~  557 (680)
                      .+.|+|+|++|++|+..+..+.+||||++++.  +   ...+|+++ ++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~   92 (134)
T cd08403          13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD   92 (134)
T ss_pred             CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence            35899999999999999988999999999983  2   46789999 999999999999998642   347999999999


Q ss_pred             CC-CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      .. ++++||++.+++..  .+.....|+.+-
T Consensus        93 ~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~  121 (134)
T cd08403          93 RVGHNELIGVCRVGPNA--DGQGREHWNEML  121 (134)
T ss_pred             CCCCCceeEEEEECCCC--CCchHHHHHHHH
Confidence            88 79999999999873  233345666553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.46  E-value=2.4e-13  Score=124.98  Aligned_cols=93  Identities=20%  Similarity=0.315  Sum_probs=75.4

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~  362 (680)
                      .+.+..|.|.|+|++|++|+..|..|.                      +||||++.+..     ..++|++ +++.||+
T Consensus         8 ~y~~~~~~L~V~vi~a~~L~~~d~~g~----------------------~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~   65 (135)
T cd08410           8 NYLPSAGRLNVDIIRAKQLLQTDMSQG----------------------SDPFVKIQLVHGLKLIKTKKTSCMRGTIDPF   65 (135)
T ss_pred             EECCCCCeEEEEEEEecCCCcccCCCC----------------------CCeEEEEEEEcCCcccceEcCccccCCCCCc
Confidence            344456999999999999999987664                      39999999732     3568888 7999999


Q ss_pred             cceeEEEEEecC--C-CeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736          363 WDSMFNMVLHEE--T-GTVRFNLYECIPGHVKYDYLTSCEVKMKY  404 (680)
Q Consensus       363 Wne~f~~~v~~~--~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~  404 (680)
                      |||+|.|.+...  . ..|.|+|||+|.. .+|++||++.+....
T Consensus        66 wnE~F~f~i~~~~l~~~~l~~~V~d~d~~-~~~~~iG~~~l~~~~  109 (135)
T cd08410          66 YNESFSFKVPQEELENVSLVFTVYGHNVK-SSNDFIGRIVIGQYS  109 (135)
T ss_pred             cceeEEEeCCHHHhCCCEEEEEEEeCCCC-CCCcEEEEEEEcCcc
Confidence            999999998642  2 3699999999986 699999999876543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.46  E-value=4.6e-13  Score=123.40  Aligned_cols=94  Identities=16%  Similarity=0.209  Sum_probs=77.8

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~  362 (680)
                      .+.+..|.|+|+|++|++|+..+..|.                      +||||++.++.     ..++|++ +++.||.
T Consensus         9 ~y~~~~~~l~V~Vi~a~~L~~~d~~g~----------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~   66 (136)
T cd08402           9 RYVPTAGKLTVVILEAKNLKKMDVGGL----------------------SDPYVKIHLMQNGKRLKKKKTTIKKRTLNPY   66 (136)
T ss_pred             EEcCCCCeEEEEEEEeeCCCcccCCCC----------------------CCCeEEEEEEECCcccceeeccceeCCCCCc
Confidence            445566999999999999999886654                      39999999852     3567887 7999999


Q ss_pred             cceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccc
Q 005736          363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV  405 (680)
Q Consensus       363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l  405 (680)
                      |||+|.|.+...   ...|.|+|||+|.. ++|++||++.+++...
T Consensus        67 wne~f~f~i~~~~l~~~~l~~~v~d~~~~-~~~~~iG~~~i~~~~~  111 (136)
T cd08402          67 YNESFSFEVPFEQIQKVHLIVTVLDYDRI-GKNDPIGKVVLGCNAT  111 (136)
T ss_pred             ccceEEEECCHHHhCCCEEEEEEEeCCCC-CCCceeEEEEECCccC
Confidence            999999998643   23799999999986 6899999999999764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.46  E-value=1.4e-12  Score=121.10  Aligned_cols=95  Identities=20%  Similarity=0.379  Sum_probs=73.8

Q ss_pred             CCeEEEEEE-----cceeeeecc-CCCCCCccceeEEEEEecC---------CCeEEEEEEEeCCCCCCCceeEEEEEec
Q 005736          338 LTTFVEIEL-----EELTRRTDA-RPGSDPRWDSMFNMVLHEE---------TGTVRFNLYECIPGHVKYDYLTSCEVKM  402 (680)
Q Consensus       338 ~dpyv~v~~-----~~~~~~T~v-~~t~nP~Wne~f~~~v~~~---------~~~l~l~v~d~d~~~~~d~~lG~~~i~l  402 (680)
                      +||||++.+     +.+..+|++ ++|+||+|||+|.|.+...         ...|.|+|||++....+|++||++.++|
T Consensus        25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L  104 (155)
T cd08690          25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL  104 (155)
T ss_pred             CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence            499999987     246889998 8999999999999999754         3469999999987545899999999999


Q ss_pred             ccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC---ceeeEEEEEEEe
Q 005736          403 KYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV---NSGELTVRLVLK  454 (680)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~---~~G~l~~~l~l~  454 (680)
                      +.+....                      ....|++|...   -.|.+++++.++
T Consensus       105 ~~l~~~~----------------------~~~~~~~L~~~~k~~Gg~l~v~ir~r  137 (155)
T cd08690         105 EPLETKC----------------------EIHESVDLMDGRKATGGKLEVKVRLR  137 (155)
T ss_pred             ccccccC----------------------cceEEEEhhhCCCCcCCEEEEEEEec
Confidence            9986432                      23346666422   147888887664

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.46  E-value=4.7e-13  Score=121.10  Aligned_cols=88  Identities=15%  Similarity=0.212  Sum_probs=75.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEccee--eeecc-CCCCCCccceeEEEEEe
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELT--RRTDA-RPGSDPRWDSMFNMVLH  372 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~--~~T~v-~~t~nP~Wne~f~~~v~  372 (680)
                      +|+|+|++|++|++.|..|.                      +||||++.++++.  .+|.+ +++.||+|||+|.|.+.
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~----------------------~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~   58 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGK----------------------SDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEAT   58 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCC----------------------CCcEEEEEECCeeccceeeEEECCCCCccceEEEEEec
Confidence            58999999999999887654                      3999999998764  45555 78999999999999987


Q ss_pred             cC-CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          373 EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       373 ~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      .. .+.|.|+|||+|.. ++|++||++.+++++..
T Consensus        59 ~~~~~~L~~~V~d~d~~-~~dd~iG~~~i~l~~~~   92 (124)
T cd04037          59 LPGNSILKISVMDYDLL-GSDDLIGETVIDLEDRF   92 (124)
T ss_pred             CCCCCEEEEEEEECCCC-CCCceeEEEEEeecccc
Confidence            55 56899999999986 59999999999998775

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.45  E-value=2.1e-13  Score=123.07  Aligned_cols=71  Identities=25%  Similarity=0.193  Sum_probs=63.2

Q ss_pred             eEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccCCCCCCCEEEEEEC--C---eEEeeeeeecCC-CCc
Q 005736          592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D---LKKRTKLTVACL-SGH  665 (680)
Q Consensus       592 G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~~g~~DPyV~v~lg--~---~~~kT~~~k~tl-nP~  665 (680)
                      .+|+++++|.              |..++|+|.|++|+||++++..+.+||||||++-  +   .++||+++++|+ ||+
T Consensus         1 ~el~~sL~Y~--------------p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~   66 (135)
T cd08692           1 AELQLGTCFQ--------------AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVK   66 (135)
T ss_pred             CeEEEEeeec--------------CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCce
Confidence            3789999998              8899999999999999998777788999999983  2   589999999996 699


Q ss_pred             ccceeEEEecC
Q 005736          666 IQNSKSSMASN  676 (680)
Q Consensus       666 wnE~f~f~V~n  676 (680)
                      |||+|.|.|..
T Consensus        67 fNEsF~Fdv~~   77 (135)
T cd08692          67 WGETMIFPVTQ   77 (135)
T ss_pred             ecceEEEeCCc
Confidence            99999999974

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.44  E-value=1.9e-12  Score=118.49  Aligned_cols=89  Identities=13%  Similarity=0.202  Sum_probs=72.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-------------eeeeecc-CCCCCC
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-------------LTRRTDA-RPGSDP  361 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-------------~~~~T~v-~~t~nP  361 (680)
                      +..|++.+|++|+ .+..|.                      +||||++.+..             +.++|++ ++++||
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~----------------------~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP   58 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFN----------------------PDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINP   58 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCC----------------------CCceEEEEEECCCcccccccccccceeeeeeEcCCCCC
Confidence            4678999999998 666564                      39999999952             3678888 799999


Q ss_pred             cc-ceeEEEEEecCCCeEEEEEEEeCCCCC--CCceeEEEEEecccccCC
Q 005736          362 RW-DSMFNMVLHEETGTVRFNLYECIPGHV--KYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       362 ~W-ne~f~~~v~~~~~~l~l~v~d~d~~~~--~d~~lG~~~i~l~~l~~~  408 (680)
                      +| ||+|.|.+. ..+.|.++|||++..+.  .|++||++.+++.++...
T Consensus        59 ~W~nE~f~f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~  107 (137)
T cd08691          59 VWHREQFVFVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLER  107 (137)
T ss_pred             ceEceEEEEEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhccc
Confidence            99 999999985 45789999999765321  279999999999999654

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.44  E-value=5.7e-13  Score=121.94  Aligned_cols=107  Identities=16%  Similarity=0.257  Sum_probs=88.9

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccceeEE
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDSMFN  368 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne~f~  368 (680)
                      |.|+|+|++|++|+..+..+.                      +||||.+.+..     ..++|++ +++.||.|||+|.
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~----------------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~   70 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGL----------------------SDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFT   70 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCC----------------------CCCcEEEEEEcCCCCCceecceeecCCCCCCccceEE
Confidence            899999999999998876553                      49999999963     5788888 7899999999999


Q ss_pred             EEEecC--CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceee
Q 005736          369 MVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGE  446 (680)
Q Consensus       369 ~~v~~~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~  446 (680)
                      |.+...  .+.|.|+|||++.. .++++||++.++++++...                       ..+.|++|.+...|+
T Consensus        71 ~~~~~~~~~~~l~v~v~d~~~~-~~~~~iG~~~~~l~~l~~~-----------------------~~~~w~~L~~~~~~~  126 (131)
T cd04026          71 FDLKPADKDRRLSIEVWDWDRT-TRNDFMGSLSFGVSELIKM-----------------------PVDGWYKLLNQEEGE  126 (131)
T ss_pred             EeCCchhcCCEEEEEEEECCCC-CCcceeEEEEEeHHHhCcC-----------------------ccCceEECcCccccc
Confidence            998764  46799999999875 5899999999999998521                       235688888877775


Q ss_pred             E
Q 005736          447 L  447 (680)
Q Consensus       447 l  447 (680)
                      .
T Consensus       127 ~  127 (131)
T cd04026         127 Y  127 (131)
T ss_pred             c
Confidence            4

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.44  E-value=7.8e-13  Score=119.06  Aligned_cols=96  Identities=21%  Similarity=0.310  Sum_probs=83.7

Q ss_pred             EEEEeecCCCCCCCCCCCcEEEEEECCE-------EEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecC----C
Q 005736          493 TVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEI----F  559 (680)
Q Consensus       493 ~I~~a~~L~~~~~~~~~dpyv~v~l~~~-------~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~----~  559 (680)
                      -.++|++|+..+..+.+||||++++.+.       .++|+++ ++.||.|||+|.|.+.. ..+.|.|+|||++.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            3488999999998899999999999543       5899999 99999999999998653 46789999999996    5


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                       ++++||++.+++.++..+.....|++|..
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence             89999999999999998777888999943

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.44  E-value=3.5e-13  Score=123.98  Aligned_cols=94  Identities=18%  Similarity=0.250  Sum_probs=78.5

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc------eeeeecc-CCCCCC
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE------LTRRTDA-RPGSDP  361 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~------~~~~T~v-~~t~nP  361 (680)
                      .+.+..|.|.|+|++|+||+..+..|.                      +||||++.+..      .+++|++ +++.||
T Consensus         9 ~Y~~~~~~L~V~VikarnL~~~~~~~~----------------------~dpyVkv~llp~~~~~~~~~kT~v~~~t~nP   66 (138)
T cd08408           9 EYNALTGRLSVEVIKGSNFKNLAMNKA----------------------PDTYVKLTLLNSDGQEISKSKTSIRRGQPDP   66 (138)
T ss_pred             EEcCCCCeEEEEEEEecCCCccccCCC----------------------CCeeEEEEEEeCCCcceeeccceeecCCCCC
Confidence            445566999999999999999887664                      39999999852      2468888 789999


Q ss_pred             ccceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccc
Q 005736          362 RWDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV  405 (680)
Q Consensus       362 ~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l  405 (680)
                      +|||+|.|.+...   +..|.|.|||+|.. +++++||++.+++...
T Consensus        67 vfnEtF~f~i~~~~l~~~~L~~~V~~~~~~-~~~~~iG~v~l~~~~~  112 (138)
T cd08408          67 EFKETFVFQVALFQLSEVTLMFSVYNKRKM-KRKEMIGWFSLGLNSS  112 (138)
T ss_pred             cEeeeEEEECCHHHhCccEEEEEEEECCCC-CCCcEEEEEEECCcCC
Confidence            9999999998753   34799999999985 6999999999988754

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.43  E-value=7.6e-13  Score=121.91  Aligned_cols=94  Identities=14%  Similarity=0.154  Sum_probs=77.7

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc--c---eeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--E---LTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~--~---~~~~T~v-~~t~nP~  362 (680)
                      .+.+..|.|.|+|++|++|++.+..|.                      +||||++.+.  +   ...+|++ +++.||.
T Consensus         9 ~y~~~~~~L~v~vi~a~~L~~~~~~g~----------------------~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~   66 (136)
T cd08405           9 CYNPTANRITVNIIKARNLKAMDINGT----------------------SDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV   66 (136)
T ss_pred             EEcCCCCeEEEEEEEeeCCCccccCCC----------------------CCceEEEEEEeCCCccccccCcceeCCCCCc
Confidence            344456999999999999999886664                      3999999983  2   3567888 7999999


Q ss_pred             cceeEEEEEec--C-CCeEEEEEEEeCCCCCCCceeEEEEEecccc
Q 005736          363 WDSMFNMVLHE--E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV  405 (680)
Q Consensus       363 Wne~f~~~v~~--~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l  405 (680)
                      |||+|.|.+..  . ...|.|+|||+|.. ++|++||++.+++.+.
T Consensus        67 wne~F~f~i~~~~~~~~~l~~~v~d~~~~-~~~~~lG~~~i~~~~~  111 (136)
T cd08405          67 FNESFIFNIPLERLRETTLIITVMDKDRL-SRNDLIGKIYLGWKSG  111 (136)
T ss_pred             ccceEEEeCCHHHhCCCEEEEEEEECCCC-CCCcEeEEEEECCccC
Confidence            99999999764  2 35799999999986 5899999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.43  E-value=5.9e-13  Score=122.64  Aligned_cols=92  Identities=16%  Similarity=0.213  Sum_probs=76.9

Q ss_pred             ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCcc
Q 005736          290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRW  363 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~W  363 (680)
                      +.+..+.|.|+|++|++|+..|..|.+                      ||||++.+..     ...+|++ +++.||.|
T Consensus        10 y~~~~~~L~V~vi~a~~L~~~d~~g~~----------------------Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w   67 (136)
T cd08404          10 YQPTTNRLTVVVLKARHLPKMDVSGLA----------------------DPYVKVNLYYGKKRISKKKTHVKKCTLNPVF   67 (136)
T ss_pred             EeCCCCeEEEEEEEeeCCCccccCCCC----------------------CeEEEEEEEcCCceeeeEcCccccCCCCCcc
Confidence            334468999999999999998876643                      9999999842     2567887 78999999


Q ss_pred             ceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736          364 DSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY  404 (680)
Q Consensus       364 ne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~  404 (680)
                      ||+|.|.+...   ...|.|+|||+|.. +++++||++.+++..
T Consensus        68 ~e~F~f~v~~~~~~~~~l~~~v~d~d~~-~~~~~iG~~~~~~~~  110 (136)
T cd08404          68 NESFVFDIPSEELEDISVEFLVLDSDRV-TKNEVIGRLVLGPKA  110 (136)
T ss_pred             CceEEEECCHHHhCCCEEEEEEEECCCC-CCCccEEEEEECCcC
Confidence            99999998752   34689999999986 689999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.43  E-value=1.5e-13  Score=153.30  Aligned_cols=331  Identities=13%  Similarity=0.087  Sum_probs=200.1

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEE---
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMV---  370 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~---  370 (680)
                      --+++.|.+|+.|...|..+.                      +|||+.+.+.++.+.|-+ .+|+||.||.+..|.   
T Consensus       206 ~~lR~yiyQar~L~a~dk~~~----------------------sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~e  263 (1105)
T KOG1326|consen  206 SPLRSYIYQARALGAPDKDDE----------------------SDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVE  263 (1105)
T ss_pred             hhhHHHHHHHHhhcCCCcccC----------------------CCchhhhhcccccceeEeecCcCCCCccceeecccee
Confidence            457788889999998886554                      399999999999999998 899999999998775   


Q ss_pred             Eec------CC-CeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc
Q 005736          371 LHE------ET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN  443 (680)
Q Consensus       371 v~~------~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~  443 (680)
                      +..      .+ ..+.|++||.|+. ++++++|++.....-..+.+..                       .|+|+-...
T Consensus       264 i~ge~~~~~~~ppi~v~e~yd~dr~-g~~ef~gr~~~~p~V~~~~p~l-----------------------kw~p~~rg~  319 (1105)
T KOG1326|consen  264 IYGEAHLVLKNPPIRVFEVYDLDRS-GINEFKGRKKQRPYVMVQCPAL-----------------------KWVPTMRGA  319 (1105)
T ss_pred             ecCccchhhcCCCeEEEEeehhhhh-chHHhhcccccceEEEecCCcc-----------------------ceEEeeccc
Confidence            222      12 3578999999997 6999999986654433221111                       233332211


Q ss_pred             --eeeEEEEEEEeeeecCCCCCCCCCCcCCCCCcccccccccCC--CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC
Q 005736          444 --SGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISR--TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK  519 (680)
Q Consensus       444 --~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~  519 (680)
                        .|++.+...+-.-..+-+..+.     .........+.-..+  ..+.+.|-...-+|...........|-+.+.+|+
T Consensus       320 ~l~gd~l~a~eliq~~~~i~~p~~-----~~~~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~  394 (1105)
T KOG1326|consen  320 FLDGDVLIAAELIQIGKPIPQPPP-----QREIIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGG  394 (1105)
T ss_pred             ccccchhHHHHHHhhcCCCCCCCc-----ccccceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCC
Confidence              2332211100000000000000     000001111111111  1123333334446665555556778889999999


Q ss_pred             EEEeeecc--CCCCCeeeeEEEEEee-CC-----ceEEEEEEEEecCC-CCceeEEEEEEc-ccccCCC-----------
Q 005736          520 IVQRTRTA--HSPNHVWNQKFELDEI-GG-----GECLMVKCYNEEIF-GDENMGSARVNL-EGLVEGS-----------  578 (680)
Q Consensus       520 ~~~~T~~~--~t~nP~wne~f~f~v~-~~-----~~~L~i~V~d~~~~-~d~~iG~~~i~L-~~l~~~~-----------  578 (680)
                      +..++..+  .-.||.++..|.+... .+     -..+.+.|.|.+.+ +-...|.|.++- ..+...+           
T Consensus       395 e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~  474 (1105)
T KOG1326|consen  395 ERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFA  474 (1105)
T ss_pred             ceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCC
Confidence            88888777  7789999877765532 12     34788999999888 778889988761 1111000           


Q ss_pred             -----------------eeeEEEeCCC-----------------C-----------CCeEEEEEEEEEEecC--------
Q 005736          579 -----------------VRDIWVPLEK-----------------V-----------NTGELRLQIEATRVDD--------  605 (680)
Q Consensus       579 -----------------~~~~w~~L~~-----------------~-----------~~G~i~l~l~~~~~~~--------  605 (680)
                                       ....|++...                 .           .++...+.++...++.        
T Consensus       475 ~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~  554 (1105)
T KOG1326|consen  475 SDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQ  554 (1105)
T ss_pred             CCchhhhcCCchhhhhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhh
Confidence                             0011111110                 0           0122334443322110        


Q ss_pred             ------------C--C--CC------C--------C---------------ccCCCCCceEEEEEEEeecCccccCCCCC
Q 005736          606 ------------N--E--GS------R--------G---------------QNIGSGNGWIELVIVEARDLVAADLRGTS  640 (680)
Q Consensus       606 ------------~--~--~~------~--------~---------------~~~~~~~~~L~V~I~~a~~L~~~d~~g~~  640 (680)
                                  .  +  +.      .        +               +...|....++|+|.+|.+|.+.|.+|++
T Consensus       555 D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~a  634 (1105)
T KOG1326|consen  555 DWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDA  634 (1105)
T ss_pred             hccceeEeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCc
Confidence                        0  0  00      0        0               11235557899999999999999999999


Q ss_pred             CCEEEEEECCeE--EeeeeeecCCCCcccceeEEEecC
Q 005736          641 DPYVKVQYGDLK--KRTKLTVACLSGHIQNSKSSMASN  676 (680)
Q Consensus       641 DPyV~v~lg~~~--~kT~~~k~tlnP~wnE~f~f~V~n  676 (680)
                      ||||++.+|++.  -++..+.+|+||+|++.|++..+-
T Consensus       635 dpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~l  672 (1105)
T KOG1326|consen  635 DPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLL  672 (1105)
T ss_pred             CceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhccc
Confidence            999999999875  577788899999999999876543

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.43  E-value=9.6e-13  Score=119.07  Aligned_cols=88  Identities=30%  Similarity=0.515  Sum_probs=78.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEE--Eeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCce
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV--QRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN  563 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~  563 (680)
                      .|+|.|++|++|+..+..+.+||||+++++++.  .+|+++ ++.||.|||+|.|.+..+ ...|.|+|||++.. +|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            379999999999999988999999999997754  578888 999999999999998654 67899999999988 8999


Q ss_pred             eEEEEEEcccccC
Q 005736          564 MGSARVNLEGLVE  576 (680)
Q Consensus       564 iG~~~i~L~~l~~  576 (680)
                      ||++.++|.+...
T Consensus        81 iG~~~i~l~~~~~   93 (124)
T cd04037          81 IGETVIDLEDRFF   93 (124)
T ss_pred             eEEEEEeeccccc
Confidence            9999999998653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.42  E-value=1.7e-12  Score=115.92  Aligned_cols=88  Identities=23%  Similarity=0.376  Sum_probs=75.9

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeecc-CCCCCCccceeEEEEEecC
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDA-RPGSDPRWDSMFNMVLHEE  374 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v-~~t~nP~Wne~f~~~v~~~  374 (680)
                      |+|+|++|++|++.+..+.                      +||||++.+++ ..++|++ .++.||.|||+|.|.+.+.
T Consensus         1 l~v~vi~a~~L~~~~~~~~----------------------~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~   58 (115)
T cd04040           1 LTVDVISAENLPSADRNGK----------------------SDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR   58 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCC----------------------CCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC
Confidence            5799999999998875443                      39999999975 4578888 7899999999999999875


Q ss_pred             -CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          375 -TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       375 -~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                       .+.+.|+|||++.. .++++||++.+++.++..
T Consensus        59 ~~~~l~~~v~d~~~~-~~~~~iG~~~~~l~~l~~   91 (115)
T cd04040          59 VRAVLKVEVYDWDRG-GKDDLLGSAYIDLSDLEP   91 (115)
T ss_pred             CCCEEEEEEEeCCCC-CCCCceEEEEEEHHHcCC
Confidence             57899999999976 589999999999999864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.42  E-value=9e-13  Score=121.27  Aligned_cols=87  Identities=22%  Similarity=0.385  Sum_probs=75.1

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc----ceeeeecc-CCCCCCccceeEEEEE
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~----~~~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      |+|+|++|++|+.+ ..|.                      +||||++.++    ...++|++ +++.||.|||+|.|.+
T Consensus         1 L~V~Vi~A~~L~~~-~~g~----------------------~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~   57 (137)
T cd08675           1 LSVRVLECRDLALK-SNGT----------------------CDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFEL   57 (137)
T ss_pred             CEEEEEEccCCCcc-cCCC----------------------CCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEc
Confidence            67999999999887 4454                      3999999998    67889998 7899999999999998


Q ss_pred             ecC----------------CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          372 HEE----------------TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       372 ~~~----------------~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      ...                ...|.|+|||++.. .++++||++.+++.++..
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~-~~~~~IG~~~i~l~~l~~  108 (137)
T cd08675          58 TIGFSYEKKSFKVEEEDLEKSELRVELWHASMV-SGDDFLGEVRIPLQGLQQ  108 (137)
T ss_pred             cccccccccccccccccccccEEEEEEEcCCcC-cCCcEEEEEEEehhhccC
Confidence            764                35799999999986 589999999999999863

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.42  E-value=1.3e-12  Score=115.85  Aligned_cols=94  Identities=15%  Similarity=0.295  Sum_probs=78.6

Q ss_pred             CCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEEecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeee
Q 005736          338 LTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWA  414 (680)
Q Consensus       338 ~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~  414 (680)
                      +||||.+.++++ .++|++ +++.||.|||+|.|.+.+. .+.|.|.|+|.+..  +|++||++.++|.++....     
T Consensus        13 ~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~--~d~~iG~~~v~L~~l~~~~-----   85 (111)
T cd04052          13 LSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR--HDPVLGSVSISLNDLIDAT-----   85 (111)
T ss_pred             CCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC--CCCeEEEEEecHHHHHhhh-----
Confidence            499999999874 578888 7899999999999999876 56799999998874  8999999999999985321     


Q ss_pred             eCCCcchhhhhhhccCceeeeeeccCCCceeeEEEEEEEe
Q 005736          415 IGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLK  454 (680)
Q Consensus       415 ~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~l~l~  454 (680)
                                      ...+.|++|.+...|+|++++.+.
T Consensus        86 ----------------~~~~~w~~L~~~~~G~i~~~~~~~  109 (111)
T cd04052          86 ----------------SVGQQWFPLSGNGQGRIRISALWK  109 (111)
T ss_pred             ----------------hccceeEECCCCCCCEEEEEEEEe
Confidence                            134679999877789999888664

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.42  E-value=2.8e-12  Score=112.54  Aligned_cols=101  Identities=22%  Similarity=0.388  Sum_probs=78.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEec------
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEE------  557 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~------  557 (680)
                      |.|+|++|+||+     +.+||||+++++     ....+|+++ +|+||.|||+|+|.+. ....|.+.|||++      
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~~~~   74 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE-GSQTLRILCYEKCYSKVKL   74 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC-CCCEEEEEEEEcccccccc
Confidence            579999999995     458999999984     257999999 9999999999999987 4779999999983      


Q ss_pred             -CC-CCceeEEEEEEccc--ccCCCeeeEEEeCCCCCCeEEEEEEE
Q 005736          558 -IF-GDENMGSARVNLEG--LVEGSVRDIWVPLEKVNTGELRLQIE  599 (680)
Q Consensus       558 -~~-~d~~iG~~~i~L~~--l~~~~~~~~w~~L~~~~~G~i~l~l~  599 (680)
                       .. .|+++|.+.+.|+-  +.....+..-+.|.+   =+|.+++.
T Consensus        75 d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~  117 (118)
T cd08686          75 DGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIK  117 (118)
T ss_pred             cccCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEe
Confidence             33 78999888887754  444555556566653   24444443

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.42  E-value=1.9e-12  Score=117.33  Aligned_cols=88  Identities=17%  Similarity=0.338  Sum_probs=74.1

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEEec
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVLHE  373 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v~~  373 (680)
                      .|+|+|.+|+ |...+..+.                      +||||.+.++++ ..+|++ +++.||.|||+|.|.+.+
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~----------------------~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~   59 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFK----------------------PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP   59 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCC----------------------CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC
Confidence            5899999998 554443343                      399999999977 789998 789999999999999864


Q ss_pred             CCCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       374 ~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                       .+.|.|+|||++.. ++|++||++.++|+++...
T Consensus        60 -~~~l~~~V~d~~~~-~~~~~iG~~~i~l~~l~~~   92 (125)
T cd04021          60 -QSTLEFKVWSHHTL-KADVLLGEASLDLSDILKN   92 (125)
T ss_pred             -CCEEEEEEEeCCCC-CCCcEEEEEEEEHHHhHhh
Confidence             57899999999986 5899999999999998643

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.42  E-value=1.4e-12  Score=119.76  Aligned_cols=92  Identities=13%  Similarity=0.220  Sum_probs=76.0

Q ss_pred             ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCcc
Q 005736          290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRW  363 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~W  363 (680)
                      +.+..|.|+|+|++|++|++.+..|.+                      ||||++.+..     ..++|++ +++.||.|
T Consensus         9 y~~~~~~L~V~v~~A~~L~~~d~~g~~----------------------dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~w   66 (134)
T cd08403           9 YLPTAGRLTLTIIKARNLKAMDITGFS----------------------DPYVKVSLMCEGRRLKKKKTSVKKNTLNPTY   66 (134)
T ss_pred             EcCCCCEEEEEEEEeeCCCccccCCCC----------------------CceEEEEEEeCCcccceecCCcccCCCCCcc
Confidence            344569999999999999999876643                      9999999842     2567887 78999999


Q ss_pred             ceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736          364 DSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY  404 (680)
Q Consensus       364 ne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~  404 (680)
                      ||+|.|.+...   ...|.|+|||+|.. ++|++||++.+++..
T Consensus        67 ne~f~f~i~~~~~~~~~l~~~v~d~~~~-~~~~~IG~~~l~~~~  109 (134)
T cd08403          67 NEALVFDVPPENVDNVSLIIAVVDYDRV-GHNELIGVCRVGPNA  109 (134)
T ss_pred             cceEEEECCHHHhCCCEEEEEEEECCCC-CCCceeEEEEECCCC
Confidence            99999998653   23699999999986 589999999998763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.41  E-value=3e-12  Score=117.78  Aligned_cols=87  Identities=16%  Similarity=0.235  Sum_probs=72.4

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEccee-eeecc-CCCCCCccceeEEEEE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELT-RRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~-~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      ...|.|.|++|++|++++                           +|||+|.+++.. .||++ .++.||.|+|.|+|..
T Consensus        10 ~~sL~v~V~EAk~Lp~~~---------------------------~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~   62 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK---------------------------RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSN   62 (146)
T ss_pred             EEEEEEEEEEccCCCCcC---------------------------CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecC
Confidence            378999999999998765                           799999999876 59998 7899999999999975


Q ss_pred             ecCCCeEEEEEEEeCCCCC---CCceeEEEEEecccccC
Q 005736          372 HEETGTVRFNLYECIPGHV---KYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       372 ~~~~~~l~l~v~d~d~~~~---~d~~lG~~~i~l~~l~~  407 (680)
                      -.....+.|.||+.+....   ++++||++.|++.++..
T Consensus        63 ~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~  101 (146)
T cd04013          63 LPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSS  101 (146)
T ss_pred             CCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcC
Confidence            5455679999986554321   68999999999999863

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.41  E-value=1.4e-12  Score=114.47  Aligned_cols=78  Identities=21%  Similarity=0.359  Sum_probs=65.0

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccceeEEEE
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDSMFNMV  370 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne~f~~~  370 (680)
                      |.|+|++|++|+.     .                      +||||++.++.     ...+|++ ++|+||+|||+|+|.
T Consensus         1 L~V~V~~A~~L~~-----~----------------------sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~   53 (118)
T cd08686           1 LNVIVHSAQGFKQ-----S----------------------ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE   53 (118)
T ss_pred             CEEEEEeCCCCCC-----C----------------------CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE
Confidence            6899999999962     2                      29999999863     4589998 899999999999999


Q ss_pred             EecCCCeEEEEEEEeC-------CCCCCCceeEEEEEecc
Q 005736          371 LHEETGTVRFNLYECI-------PGHVKYDYLTSCEVKMK  403 (680)
Q Consensus       371 v~~~~~~l~l~v~d~d-------~~~~~d~~lG~~~i~l~  403 (680)
                      +.+ .+.|++.|||++       .. .+|+++|++.+.|.
T Consensus        54 l~~-s~~L~~~v~d~~~~~~~~d~~-~~d~~~G~g~i~Ld   91 (118)
T cd08686          54 LEG-SQTLRILCYEKCYSKVKLDGE-GTDAIMGKGQIQLD   91 (118)
T ss_pred             eCC-CCEEEEEEEEccccccccccc-CcccEEEEEEEEEC
Confidence            974 779999999983       33 58999988877764

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.39  E-value=2.9e-12  Score=117.97  Aligned_cols=93  Identities=13%  Similarity=0.166  Sum_probs=75.7

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~  362 (680)
                      .+.+..+.|.|+|++|+||+..+ .+.                      +||||++.+..     ..++|++ +++.||+
T Consensus         9 ~y~~~~~~L~V~V~~a~nL~~~~-~~~----------------------~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~   65 (137)
T cd08409           9 TYNPTLNRLTVVVLRARGLRQLD-HAH----------------------TSVYVKVSLMIHNKVVKTKKTEVVDGAASPS   65 (137)
T ss_pred             EECCCCCeEEEEEEEecCCCccc-CCC----------------------CCeEEEEEEEECCEEeeeeecccEeCCCCCc
Confidence            33344589999999999999888 443                      39999999863     3568888 7999999


Q ss_pred             cceeEEEEEecC--C-CeEEEEEEEeCCCCCCCceeEEEEEecccc
Q 005736          363 WDSMFNMVLHEE--T-GTVRFNLYECIPGHVKYDYLTSCEVKMKYV  405 (680)
Q Consensus       363 Wne~f~~~v~~~--~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l  405 (680)
                      |||+|.|.+...  . ..|.|+|+|.+.. .++++||++.+.....
T Consensus        66 fnE~F~f~i~~~~l~~~~L~~~V~~~~~~-~~~~~lG~v~ig~~~~  110 (137)
T cd08409          66 FNESFSFKVTSRQLDTASLSLSVMQSGGV-RKSKLLGRVVLGPFMY  110 (137)
T ss_pred             ccceEEEECCHHHhCccEEEEEEEeCCCC-CCcceEEEEEECCccc
Confidence            999999998642  3 5799999999985 6999999999986544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.38  E-value=8.7e-12  Score=113.52  Aligned_cols=109  Identities=27%  Similarity=0.442  Sum_probs=89.8

Q ss_pred             EEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCEEEeeecc-CCC-CCeeeeEEEEEeeCC-ceEEEEEEEEec
Q 005736          489 KINVTVVEGKDLMPKD--KSGKCDPYVKLQY------GKIVQRTRTA-HSP-NHVWNQKFELDEIGG-GECLMVKCYNEE  557 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~--~~~~~dpyv~v~l------~~~~~~T~~~-~t~-nP~wne~f~f~v~~~-~~~L~i~V~d~~  557 (680)
                      .|+|+|++|+||+..+  ..+.+||||++++      +...++|+++ ++. ||.|||+|.|.+..+ ...|.|+|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6999999999998877  4688999999999      3467899998 665 999999999998865 467999999998


Q ss_pred             CCCCceeEEEEEEcccccCCCeeeEEEeCCCC-----CCeEEEEEEEE
Q 005736          558 IFGDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA  600 (680)
Q Consensus       558 ~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~~  600 (680)
                      ..++++||++.++|.++..+   ..|++|.+.     ..|.|.+.++.
T Consensus        83 ~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          83 SGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence            76889999999999998544   367888652     24777777643

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.37  E-value=5e-12  Score=113.22  Aligned_cols=105  Identities=16%  Similarity=0.254  Sum_probs=75.9

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEEecC
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVLHEE  374 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v~~~  374 (680)
                      |+|+|++|++|+..   |.                      +||||.+.++++ .++|++ ++ .||.|||+|.|.+...
T Consensus         2 L~v~vi~a~~l~~~---~~----------------------~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~   55 (117)
T cd08383           2 LRLRILEAKNLPSK---GT----------------------RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPP   55 (117)
T ss_pred             eEEEEEEecCCCcC---CC----------------------CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCc
Confidence            78999999999876   43                      399999999975 478888 57 9999999999998774


Q ss_pred             ---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc-----eee
Q 005736          375 ---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN-----SGE  446 (680)
Q Consensus       375 ---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~-----~G~  446 (680)
                         ...|.+.+||.+.. .++..+|++.+  ..+..                      |...+.|++|.+..     .|+
T Consensus        56 ~~~~~~l~i~v~d~~~~-~~~~~~g~v~l--~~~~~----------------------~~~~~~w~~L~~~~~~~~~~G~  110 (117)
T cd08383          56 DVTFFTLSFYNKDKRSK-DRDIVIGKVAL--SKLDL----------------------GQGKDEWFPLTPVDPDSEVQGS  110 (117)
T ss_pred             cccEEEEEEEEEecccC-CCeeEEEEEEe--cCcCC----------------------CCcceeEEECccCCCCCCcCce
Confidence               23577777776643 35666666554  44432                      12346788886533     688


Q ss_pred             EEEEEE
Q 005736          447 LTVRLV  452 (680)
Q Consensus       447 l~~~l~  452 (680)
                      |++++.
T Consensus       111 l~l~~~  116 (117)
T cd08383         111 VRLRAR  116 (117)
T ss_pred             EEEEEE
Confidence            887764

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.37  E-value=1.5e-12  Score=159.31  Aligned_cols=113  Identities=20%  Similarity=0.408  Sum_probs=101.7

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEeeecc-CCCCCeeeeEEEEEeeCC--ceEEEEEEEEecCCCCc
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIFGDE  562 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~T~~~-~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~~~d~  562 (680)
                      .|.|+|+|++|+||.  +..+.+||||++.+|++ +.||+++ ++.||.|||.|.|.+.++  ++.|.|+|||+|.++++
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd 2056 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKS 2056 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCC
Confidence            579999999999998  44689999999999865 8899999 999999999999888875  47899999999988677


Q ss_pred             eeEEEEEEcccccCCCeeeEEEeCCC--CCCeE---EEEEEEEE
Q 005736          563 NMGSARVNLEGLVEGSVRDIWVPLEK--VNTGE---LRLQIEAT  601 (680)
Q Consensus       563 ~iG~~~i~L~~l~~~~~~~~w~~L~~--~~~G~---i~l~l~~~  601 (680)
                      .||.+.|+|.++..+.....||+|.+  .+.|+   |++.++|.
T Consensus      2057 ~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2057 SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred             CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence            99999999999999999999999997  46798   99999886

>PLN03008 Phospholipase D delta

Probab=99.37  E-value=3.9e-12  Score=143.09  Aligned_cols=96  Identities=14%  Similarity=0.317  Sum_probs=79.8

Q ss_pred             CCCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeee
Q 005736          337 DLTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWA  414 (680)
Q Consensus       337 ~~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~  414 (680)
                      .+||||+|.++++ ..+|++ +++.||+|||+|.|.+.+....|.|+|+|+|..  .+++||++.||++++..       
T Consensus        76 tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~--gaD~IG~a~IPL~~L~~-------  146 (868)
T PLN03008         76 TSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVF--GAQIIGTAKIPVRDIAS-------  146 (868)
T ss_pred             CCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCcc--CCceeEEEEEEHHHcCC-------
Confidence            4699999999875 458998 799999999999999998777999999999986  46999999999999864       


Q ss_pred             eCCCcchhhhhhhccCceeeeeeccCCCc------eeeEEEEEEEeee
Q 005736          415 IGPDSGIIAKHAEFCGDEVEMTVPFEGVN------SGELTVRLVLKEW  456 (680)
Q Consensus       415 ~~~~~~~~~~~~~~~g~~~~~~~~l~~~~------~G~l~~~l~l~~~  456 (680)
                                     |...+.|+++.+..      .|+|++++.+.+.
T Consensus       147 ---------------Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv  179 (868)
T PLN03008        147 ---------------GERISGWFPVLGASGKPPKAETAIFIDMKFTPF  179 (868)
T ss_pred             ---------------CCceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence                           34566777775432      4789999988764

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.37  E-value=3.7e-13  Score=137.70  Aligned_cols=94  Identities=15%  Similarity=0.323  Sum_probs=82.1

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCccceeE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPRWDSMF  367 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wne~f  367 (680)
                      ...|.|+|.+|+||-++|..|.+                      ||||.+.+-     ..+++|++ +.++||+|||+|
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlS----------------------DPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtf  236 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLS----------------------DPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETF  236 (683)
T ss_pred             CceEEEEehhhccccccCCCCCC----------------------CcceeEEeccCCcchhhhhhhhhhhhcCcccccee
Confidence            46899999999999999988875                      999999984     34678887 899999999999


Q ss_pred             EEEEecC--CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCc
Q 005736          368 NMVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDST  410 (680)
Q Consensus       368 ~~~v~~~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~  410 (680)
                      .|.+...  +..|.++|||+|+. +++|++|...+.+++|...+.
T Consensus       237 tf~Lkp~DkdrRlsiEvWDWDrT-sRNDFMGslSFgisEl~K~p~  280 (683)
T KOG0696|consen  237 TFKLKPSDKDRRLSIEVWDWDRT-SRNDFMGSLSFGISELQKAPV  280 (683)
T ss_pred             EEecccccccceeEEEEeccccc-ccccccceecccHHHHhhcch
Confidence            9998764  45799999999997 699999999999999976543

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.36  E-value=2.1e-12  Score=118.62  Aligned_cols=92  Identities=13%  Similarity=0.165  Sum_probs=77.4

Q ss_pred             ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCcc
Q 005736          290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRW  363 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~W  363 (680)
                      +.+..|.|.|+|++|++|+..+..+.                      +||||++.+..     ...+|++ +++.||.|
T Consensus         9 y~~~~~~L~V~v~~a~~L~~~~~~~~----------------------~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~w   66 (134)
T cd00276           9 YLPTAERLTVVVLKARNLPPSDGKGL----------------------SDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVF   66 (134)
T ss_pred             eeCCCCEEEEEEEEeeCCCCccCCCC----------------------CCcEEEEEEEcCCeEeeeecCcceecCCCCee
Confidence            33445899999999999998875543                      39999999864     2568887 78999999


Q ss_pred             ceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736          364 DSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY  404 (680)
Q Consensus       364 ne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~  404 (680)
                      ||+|.|.+...   ...|.|+|||.+.. .++++||++.+++.+
T Consensus        67 ne~f~f~i~~~~l~~~~l~~~v~d~~~~-~~~~~lG~~~i~l~~  109 (134)
T cd00276          67 NEAFSFDVPAEQLEEVSLVITVVDKDSV-GRNEVIGQVVLGPDS  109 (134)
T ss_pred             eeeEEEECCHHHhCCcEEEEEEEecCCC-CCCceeEEEEECCCC
Confidence            99999998764   46799999999986 589999999999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.32  E-value=6.7e-12  Score=112.98  Aligned_cols=86  Identities=19%  Similarity=0.299  Sum_probs=71.8

Q ss_pred             EEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-------eeeecc-CCCCCCccceeEEEEEe
Q 005736          301 VISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-------TRRTDA-RPGSDPRWDSMFNMVLH  372 (680)
Q Consensus       301 v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-------~~~T~v-~~t~nP~Wne~f~~~v~  372 (680)
                      .++|++|++.+..|.+                      ||||++.+...       .++|++ +++.||+|||+|.|.+.
T Consensus         6 ~i~a~~L~~~d~~g~~----------------------DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~   63 (120)
T cd04048           6 SISCRNLLDKDVLSKS----------------------DPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYY   63 (120)
T ss_pred             EEEccCCCCCCCCCCC----------------------CcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEE
Confidence            4789999998866643                      99999999764       378888 89999999999999865


Q ss_pred             c-CCCeEEEEEEEeCCC---CCCCceeEEEEEecccccCC
Q 005736          373 E-ETGTVRFNLYECIPG---HVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       373 ~-~~~~l~l~v~d~d~~---~~~d~~lG~~~i~l~~l~~~  408 (680)
                      . ..+.|.|+|||+|..   .++|++||++.+++++|...
T Consensus        64 ~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~  103 (120)
T cd04048          64 FEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSS  103 (120)
T ss_pred             eEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcC
Confidence            4 456899999999961   26999999999999999643

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.32  E-value=1.3e-11  Score=111.62  Aligned_cols=96  Identities=16%  Similarity=0.227  Sum_probs=77.9

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~  362 (680)
                      .+.+..+.|+|+|++|++|++.+..+.                      +||||++.+.     ....+|++ +++.||.
T Consensus         9 ~y~~~~~~L~V~v~~a~~L~~~~~~~~----------------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~   66 (123)
T cd04035           9 LYDPANSALHCTIIRAKGLKAMDANGL----------------------SDPYVKLNLLPGASKATKLRTKTVHKTRNPE   66 (123)
T ss_pred             EEeCCCCEEEEEEEEeeCCCCCCCCCC----------------------CCceEEEEEecCCCCCCceeeeeecCCCCCC
Confidence            333445899999999999998876554                      3999999983     24678888 7899999


Q ss_pred             cceeEEEE-Eec--C-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          363 WDSMFNMV-LHE--E-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       363 Wne~f~~~-v~~--~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      |||+|.|. +..  . ...+.|+|||++..  .+++||++.+++++|..+
T Consensus        67 Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~--~~~~iG~~~i~l~~l~~~  114 (123)
T cd04035          67 FNETLTYYGITEEDIQRKTLRLLVLDEDRF--GNDFLGETRIPLKKLKPN  114 (123)
T ss_pred             ccceEEEcCCCHHHhCCCEEEEEEEEcCCc--CCeeEEEEEEEcccCCCC
Confidence            99999996 332  1 46899999999874  789999999999999754

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=1.3e-12  Score=130.18  Aligned_cols=208  Identities=19%  Similarity=0.284  Sum_probs=151.4

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccceeE-
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDSMF-  367 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne~f-  367 (680)
                      -.+..++..|++|++++..+..                      |||+.+.+..     ...+|++ .+++||.|+|+- 
T Consensus        93 ~~~~~tl~~a~~lk~~~~~~~~----------------------d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev  150 (362)
T KOG1013|consen   93 RMLDTTLDRAKGLKPMDINGLA----------------------DPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEV  150 (362)
T ss_pred             hhcceeechhcccchhhhhhhc----------------------chHHhhhcccchhhhhhhhHHhhccCcCcceeccce
Confidence            6889999999999999988764                      9999998863     3467777 799999999864 


Q ss_pred             -EEEEecCC--CeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccC----
Q 005736          368 -NMVLHEET--GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFE----  440 (680)
Q Consensus       368 -~~~v~~~~--~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~----  440 (680)
                       .+...+..  ..+++.|.|.+.. ...+++|+..+++..|.....             +.++.|=   ...+|.+    
T Consensus       151 ~~~i~~~~~~~K~~Rk~vcdn~~~-~~~~sqGq~r~~lkKl~p~q~-------------k~f~~cl---~~~lp~~rad~  213 (362)
T KOG1013|consen  151 YEGITDDDTHLKVLRKVVCDNDKK-THNESQGQSRVSLKKLKPLQR-------------KSFNICL---EKSLPSERADR  213 (362)
T ss_pred             ecccccchhhhhhhheeeccCccc-ccccCcccchhhhhccChhhc-------------chhhhhh---hccCCcccccc
Confidence             45555543  3588889998875 578999999999888864311             1111000   0001111    


Q ss_pred             --CCceeeEEEEEEEeeeecCCCCCCCCCCcCCCCCcccccccccCCCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC
Q 005736          441 --GVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG  518 (680)
Q Consensus       441 --~~~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~  518 (680)
                        ..++|++.+++.+                             .+ +..-+.|+++.|..|...|.++.+||||..++.
T Consensus       214 ~~~E~rg~i~isl~~-----------------------------~s-~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~  263 (362)
T KOG1013|consen  214 DEDEERGAILISLAY-----------------------------SS-TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLS  263 (362)
T ss_pred             cchhhccceeeeecc-----------------------------Cc-CCCceEEEEEEeeeeeccccCCCCCccceeecC
Confidence              1123444433311                             11 123699999999999999999999999999982


Q ss_pred             -----CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC-CCceeEEEEEEc
Q 005736          519 -----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVNL  571 (680)
Q Consensus       519 -----~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~-~d~~iG~~~i~L  571 (680)
                           .-+.+|.+. +|.+|.||+.|.|.+...   ...+.|.|||++.. ..+++|-+...+
T Consensus       264 pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~  326 (362)
T KOG1013|consen  264 PDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG  326 (362)
T ss_pred             CCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc
Confidence                 257789999 999999999999998763   67899999999987 778888766543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.28  E-value=1.2e-11  Score=151.73  Aligned_cols=111  Identities=15%  Similarity=0.236  Sum_probs=91.9

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeecc-CCCCCCccceeEEEEE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      .|.|.|+|++|+||. .+ .|.                      .||||++.+|++ +++|++ +++.||+|||.|+|.+
T Consensus      1979 ~G~L~V~V~~a~nl~-~~-~~~----------------------sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~ 2034 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK-QS-MGN----------------------TNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAF 2034 (2102)
T ss_pred             CcceEEEEeeccccc-cc-cCC----------------------CCCeEEEEECCCCcccccccCCCCCCCcccceeeee
Confidence            399999999999998 33 343                      399999999966 788998 8999999999999999


Q ss_pred             ecCC--CeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCC--Cceee-
Q 005736          372 HEET--GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEG--VNSGE-  446 (680)
Q Consensus       372 ~~~~--~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~--~~~G~-  446 (680)
                      .++.  ++|+++|||+|.+  .++.||+++|++.++..+                      +....||++.+  .+.|. 
T Consensus      2035 ~~p~~~~~l~iev~d~d~f--~kd~~G~~~i~l~~vv~~----------------------~~~~~~~~L~~~~~k~G~~ 2090 (2102)
T PLN03200       2035 DSPPKGQKLHISCKSKNTF--GKSSLGKVTIQIDRVVME----------------------GTYSGEYSLNPESNKDGSS 2090 (2102)
T ss_pred             cCCCCCCceEEEEEecCcc--CCCCCceEEEEHHHHhcC----------------------ceeeeeeecCcccccCCCc
Confidence            9864  7899999999986  455999999999998643                      35567888876  45788 


Q ss_pred             --EEEEEE
Q 005736          447 --LTVRLV  452 (680)
Q Consensus       447 --l~~~l~  452 (680)
                        +.+++.
T Consensus      2091 ~~~~~e~~ 2098 (2102)
T PLN03200       2091 RTLEIEFQ 2098 (2102)
T ss_pred             ceEEEEEE
Confidence              777763

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.25  E-value=8.8e-11  Score=106.86  Aligned_cols=87  Identities=18%  Similarity=0.415  Sum_probs=72.0

Q ss_pred             EEEEEEEecCCCCCCC--CCCCCcccccccCCCCccccccCCCCCCeEEEEEEc------ceeeeecc-CCC-CCCccce
Q 005736          296 IVYVRVISASKLSRSS--LRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDA-RPG-SDPRWDS  365 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d--~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~------~~~~~T~v-~~t-~nP~Wne  365 (680)
                      .|+|+|++|++|+..+  ..+.                      .||||++++.      ....+|++ .++ .||.|||
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~----------------------~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e   60 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSI----------------------VDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNE   60 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCc----------------------cCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCC
Confidence            5899999999999876  2332                      4999999994      45578887 555 5999999


Q ss_pred             eEEEEEecCC-CeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          366 MFNMVLHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       366 ~f~~~v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      +|.|.+.... ..|.|+|||.+..  +|++||++.+++.++.
T Consensus        61 ~f~f~~~~~~~~~l~~~V~d~~~~--~~~~iG~~~~~l~~l~  100 (128)
T cd00275          61 TFEFDVTVPELAFLRFVVYDEDSG--DDDFLGQACLPLDSLR  100 (128)
T ss_pred             cEEEEEeCCCeEEEEEEEEeCCCC--CCcEeEEEEEEhHHhc
Confidence            9999988654 5699999998874  8999999999999985

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.24  E-value=3.5e-11  Score=106.46  Aligned_cols=83  Identities=20%  Similarity=0.387  Sum_probs=68.9

Q ss_pred             EEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce------eeeecc-CCCCCCccceeEEEEEec
Q 005736          301 VISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL------TRRTDA-RPGSDPRWDSMFNMVLHE  373 (680)
Q Consensus       301 v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~------~~~T~v-~~t~nP~Wne~f~~~v~~  373 (680)
                      .++|++|++.|..|.+                      ||||++.+...      .++|++ ++++||+|| +|.|.+.+
T Consensus         6 ~i~a~~L~~~d~~~~~----------------------DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~   62 (110)
T cd04047           6 QFSGKKLDKKDFFGKS----------------------DPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQK   62 (110)
T ss_pred             EEEeCCCCCCCCCCCC----------------------CeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHH
Confidence            4589999999876653                      99999988542      578888 899999999 68887543


Q ss_pred             C-----CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          374 E-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       374 ~-----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      .     ...|.|+|||+|.. ++|++||++.++++++..
T Consensus        63 l~~~~~~~~l~~~V~d~d~~-~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          63 LCNGDYDRPIKIEVYDYDSS-GKHDLIGEFETTLDELLK  100 (110)
T ss_pred             hcCCCcCCEEEEEEEEeCCC-CCCcEEEEEEEEHHHHhc
Confidence            2     56899999999986 699999999999999964

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.24  E-value=3.8e-11  Score=100.36  Aligned_cols=79  Identities=29%  Similarity=0.562  Sum_probs=70.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCC-CCce
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDEN  563 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~-~d~~  563 (680)
                      |+|+|++|+||+..+..+.+||||++.+++   ..++|+++ ++.+|.|+|+|.|.+.. ..+.|.|+|||++.. +|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            789999999999888888999999999965   77999999 99999999999999765 455699999999988 6999


Q ss_pred             eEEEE
Q 005736          564 MGSAR  568 (680)
Q Consensus       564 iG~~~  568 (680)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=1.3e-11  Score=131.40  Aligned_cols=111  Identities=37%  Similarity=0.629  Sum_probs=97.6

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC------
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF------  559 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~------  559 (680)
                      ...+.++|++|.+|..+|..|++||||.+.+++.+.||+++ +.+||+|||.|.|.+.+..+.|.+.|||.|..      
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr  373 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR  373 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence            44799999999999999999999999999999999999999 99999999999999999999999999998752      


Q ss_pred             ------CCceeEEEEEEcccccCCCeeeEEEeCCCC-----CCeEEEEEEE
Q 005736          560 ------GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIE  599 (680)
Q Consensus       560 ------~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~  599 (680)
                            .|+|+|+..|.+..+.  ...+.||+|+..     .+|.|++.+.
T Consensus       374 qkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhis  422 (1283)
T KOG1011|consen  374 QKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHIS  422 (1283)
T ss_pred             HHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEE
Confidence                  5899999999988763  456799999864     2577766553

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.23  E-value=5.1e-11  Score=105.43  Aligned_cols=85  Identities=24%  Similarity=0.389  Sum_probs=72.5

Q ss_pred             EEEEEeecCCCCCCCCCCCcEEEEEECC------EEEeeecc-CCCCCeeeeEEEEEeeC-----CceEEEEEEEEecCC
Q 005736          492 VTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-HSPNHVWNQKFELDEIG-----GGECLMVKCYNEEIF  559 (680)
Q Consensus       492 V~I~~a~~L~~~~~~~~~dpyv~v~l~~------~~~~T~~~-~t~nP~wne~f~f~v~~-----~~~~L~i~V~d~~~~  559 (680)
                      +-.++|++|+..+..+.+||||++++.+      ..++|+++ ++.||.|| +|.|.+..     ....|.|+|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            4456999999999889999999999843      36899999 99999999 68877532     267999999999988


Q ss_pred             -CCceeEEEEEEcccccCC
Q 005736          560 -GDENMGSARVNLEGLVEG  577 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~  577 (680)
                       +|++||++.++++++..+
T Consensus        83 ~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          83 GKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             CCCcEEEEEEEEHHHHhcC
Confidence             899999999999998743

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.22  E-value=5e-11  Score=99.63  Aligned_cols=80  Identities=18%  Similarity=0.348  Sum_probs=68.5

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc---eeeeecc-CCCCCCccceeEEEEEe
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE---LTRRTDA-RPGSDPRWDSMFNMVLH  372 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~---~~~~T~v-~~t~nP~Wne~f~~~v~  372 (680)
                      |+|+|++|++|+..+..+.                      .||||++.++.   ...+|++ +++.+|.|||+|.|.+.
T Consensus         1 L~v~I~~a~~L~~~~~~~~----------------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~   58 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGK----------------------PDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLD   58 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSS----------------------BEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEES
T ss_pred             CEEEEEEEECCCCcccCCc----------------------ccccceeecceeeeeeeeeeeeeccccceeeeeeeeeee
Confidence            7899999999998774443                      39999999986   5689998 78999999999999977


Q ss_pred             cC-CCeEEEEEEEeCCCCCCCceeEEEE
Q 005736          373 EE-TGTVRFNLYECIPGHVKYDYLTSCE  399 (680)
Q Consensus       373 ~~-~~~l~l~v~d~d~~~~~d~~lG~~~  399 (680)
                      .. .+.|.|+|||++.. .+|++||++.
T Consensus        59 ~~~~~~l~~~V~~~~~~-~~~~~iG~~~   85 (85)
T PF00168_consen   59 DPDLDSLSFEVWDKDSF-GKDELIGEVK   85 (85)
T ss_dssp             HGCGTEEEEEEEEETSS-SSEEEEEEEE
T ss_pred             cccccceEEEEEECCCC-CCCCEEEEEC
Confidence            65 45699999999986 5799999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=5.2e-11  Score=126.85  Aligned_cols=111  Identities=17%  Similarity=0.360  Sum_probs=94.4

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE  373 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~  373 (680)
                      ..+.++|+.|.+|.++|..|++                      ||||...+|..+++|++ ...+||+|||.|.|..++
T Consensus       295 akitltvlcaqgl~akdktg~s----------------------dpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn  352 (1283)
T KOG1011|consen  295 AKITLTVLCAQGLIAKDKTGKS----------------------DPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN  352 (1283)
T ss_pred             eeeEEeeeecccceecccCCCC----------------------CCcEEEeecccchhhHhhhhccchhhhhheeeeecC
Confidence            5788999999999999998875                      99999999999999998 899999999999999999


Q ss_pred             CCCeEEEEEEEeCCCC----------CCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc
Q 005736          374 ETGTVRFNLYECIPGH----------VKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN  443 (680)
Q Consensus       374 ~~~~l~l~v~d~d~~~----------~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~  443 (680)
                      .++.+.+.|||.|.+.          -+|||+|+..|.+..|.                        ++.+.||.|+...
T Consensus       353 stdrikvrvwded~dlksklrqkl~resddflgqtvievrtls------------------------gemdvwynlekrt  408 (1283)
T KOG1011|consen  353 STDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS------------------------GEMDVWYNLEKRT  408 (1283)
T ss_pred             CCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc------------------------cchhhhcchhhcc
Confidence            9999999999988652          26999999999988874                        2567788886543


Q ss_pred             -----eeeEEEEE
Q 005736          444 -----SGELTVRL  451 (680)
Q Consensus       444 -----~G~l~~~l  451 (680)
                           +|.|.+.+
T Consensus       409 dksavsgairlhi  421 (1283)
T KOG1011|consen  409 DKSAVSGAIRLHI  421 (1283)
T ss_pred             chhhccceEEEEE
Confidence                 46655443

>cd00030 C2 C2 domain

Probab=99.15  E-value=2.7e-10  Score=97.61  Aligned_cols=97  Identities=34%  Similarity=0.703  Sum_probs=86.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCC-CCceeE
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      |.|.|++|++|........++|||.+.+.. ..++|++. ++.||.||+.|.|.+.. ....+.|+||+.+.. .+.+||
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            478999999998766677899999999987 89999999 99999999999999987 678899999999887 689999


Q ss_pred             EEEEEccccc-CCCeeeEEEeC
Q 005736          566 SARVNLEGLV-EGSVRDIWVPL  586 (680)
Q Consensus       566 ~~~i~L~~l~-~~~~~~~w~~L  586 (680)
                      .+.+++.++. .......|++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEeHHHhhhcCCcCcceecC
Confidence            9999999988 66677788875

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.09  E-value=6.8e-10  Score=95.44  Aligned_cols=91  Identities=30%  Similarity=0.559  Sum_probs=79.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCce
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN  563 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~~  563 (680)
                      +.++|+++++|......+..+|||++.+..   ...+|+.+ ++.||.|||+|.|.+... ...|.|+|||.+.. .+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            789999999998777657899999999965   48999999 888999999999999876 88999999999877 6899


Q ss_pred             eEEEEEEcccccCCCee
Q 005736          564 MGSARVNLEGLVEGSVR  580 (680)
Q Consensus       564 iG~~~i~L~~l~~~~~~  580 (680)
                      +|.+.+++.++..+...
T Consensus        82 ~G~~~~~l~~~~~~~~~   98 (101)
T smart00239       82 IGQVTIPLSDLLLGGRH   98 (101)
T ss_pred             eEEEEEEHHHcccCccc
Confidence            99999999988765443

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1

Probab=99.05  E-value=1.1e-09  Score=92.82  Aligned_cols=87  Identities=17%  Similarity=0.296  Sum_probs=73.4

Q ss_pred             HHHHHhhcc-cCchHHHHHHHHHHHHHHHhh-cCCCccceEEEeEEeeCCCCCeeeeEEEEECCCCCeEEEEEEEEEecC
Q 005736          106 NKLLMEVWP-GYINPKLSIRFSQIVEKRLKH-RKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDAN  183 (680)
Q Consensus       106 N~~l~~~W~-~~~~~~~~~~i~~~v~~~l~~-~~P~~i~~i~~~~~~lG~~pp~i~~v~~~~~~~~~~~~ld~~~~~~~~  183 (680)
                      |.++++++- .+-++.+.+.+++.++..|+. .+|+|+++|.+++++||+.||.|+++++.....++++.+|+++.|.| 
T Consensus         1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G-   79 (91)
T PF10296_consen    1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG-   79 (91)
T ss_pred             ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC-
Confidence            677777543 344678899999999999998 68999999999999999999999999997656777899999999999 


Q ss_pred             CeEEEEEEEe
Q 005736          184 DISILLLAKL  193 (680)
Q Consensus       184 ~~~i~l~~~~  193 (680)
                      ++++.++.++
T Consensus        80 ~~~l~l~t~l   89 (91)
T PF10296_consen   80 GFSLTLETKL   89 (91)
T ss_pred             CeEEEEEEEE
Confidence            5666666553

These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=98.99  E-value=2.8e-09  Score=96.30  Aligned_cols=89  Identities=24%  Similarity=0.272  Sum_probs=74.7

Q ss_pred             EEEEEEEeecCCCCC--CCC--CCCcEEEEEEC---CEEEeeecc-CCCC--CeeeeEEEEEeeC---------------
Q 005736          490 INVTVVEGKDLMPKD--KSG--KCDPYVKLQYG---KIVQRTRTA-HSPN--HVWNQKFELDEIG---------------  544 (680)
Q Consensus       490 L~V~I~~a~~L~~~~--~~~--~~dpyv~v~l~---~~~~~T~~~-~t~n--P~wne~f~f~v~~---------------  544 (680)
                      |+|.|.+|+|++..+  ..|  .+||||++.+.   ...++|.+. +++|  |.||+.|.|.+.-               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            899999999965433  245  59999999994   478999999 9999  9999999988653               


Q ss_pred             ---------CceEEEEEEEEecCC-CCceeEEEEEEcccccCCC
Q 005736          545 ---------GGECLMVKCYNEEIF-GDENMGSARVNLEGLVEGS  578 (680)
Q Consensus       545 ---------~~~~L~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~  578 (680)
                               ....|.++|||+|.+ +|++||++.++|+.+..+.
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                     135899999999998 8999999999999887544

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02270 phospholipase D alpha

Probab=98.98  E-value=7.4e-09  Score=117.10  Aligned_cols=119  Identities=18%  Similarity=0.357  Sum_probs=102.0

Q ss_pred             cEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECC-EEEeeecc-C-CCCCeeeeEEEEEeeCCc
Q 005736          488 RKINVTVVEGKDLMPKD------------------KSGKCDPYVKLQYGK-IVQRTRTA-H-SPNHVWNQKFELDEIGGG  546 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~------------------~~~~~dpyv~v~l~~-~~~~T~~~-~-t~nP~wne~f~f~v~~~~  546 (680)
                      |.|.++|.+|++|+..+                  ..+.+||||.|.+++ ...||+++ + ..||.|+|.|.+.+....
T Consensus         8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~   87 (808)
T PLN02270          8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA   87 (808)
T ss_pred             cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence            58999999999997531                  125679999999965 78899999 6 469999999999999888


Q ss_pred             eEEEEEEEEecCCCCceeEEEEEEcccccCCCeeeEEEeCCCCC------CeEEEEEEEEEEecCC
Q 005736          547 ECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATRVDDN  606 (680)
Q Consensus       547 ~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~------~G~i~l~l~~~~~~~~  606 (680)
                      ..+.|.|.|.+.+...+||.+.+|..++..+...+.|+++.+..      ..+|+++++|.++...
T Consensus        88 ~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~  153 (808)
T PLN02270         88 SNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKD  153 (808)
T ss_pred             ceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccC
Confidence            89999999999887889999999999999988899999997642      2489999999986543

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=98.96  E-value=4.5e-09  Score=90.26  Aligned_cols=90  Identities=16%  Similarity=0.350  Sum_probs=75.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce---eeeecc-CCCCCCccceeEEEEE
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL---TRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~---~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      .|.|+|.+|++|......+.                      .+|||.+++...   ..+|++ .++.||.|||+|.|.+
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~----------------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~   58 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGK----------------------SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEV   58 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCC----------------------CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEe
Confidence            37899999999987653222                      499999999864   788887 6778999999999999


Q ss_pred             ecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          372 HEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       372 ~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      ... .+.|.|+|||.+.. ..+.++|.+.+++.++...
T Consensus        59 ~~~~~~~l~i~v~~~~~~-~~~~~~G~~~~~l~~~~~~   95 (101)
T smart00239       59 PPPELAELEIEVYDKDRF-GRDDFIGQVTIPLSDLLLG   95 (101)
T ss_pred             cCcccCEEEEEEEecCCc-cCCceeEEEEEEHHHcccC
Confidence            887 78899999998875 4799999999999988643

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=98.89  E-value=1.1e-08  Score=87.60  Aligned_cols=87  Identities=22%  Similarity=0.391  Sum_probs=74.2

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeecc-CCCCCCccceeEEEEEec-
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDA-RPGSDPRWDSMFNMVLHE-  373 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v-~~t~nP~Wne~f~~~v~~-  373 (680)
                      |.|+|++|++|........                      .||||.+.+.. ...+|.+ .++.||.|||.|.|.+.. 
T Consensus         1 l~v~i~~~~~l~~~~~~~~----------------------~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~   58 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGK----------------------SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP   58 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCC----------------------CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC
Confidence            5789999999987543222                      49999999997 8888988 688999999999999998 


Q ss_pred             CCCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       374 ~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      ....+.|+|||.+.. .+++++|++.+++.++.
T Consensus        59 ~~~~l~i~v~~~~~~-~~~~~ig~~~~~l~~l~   90 (102)
T cd00030          59 ESDTLTVEVWDKDRF-SKDDFLGEVEIPLSELL   90 (102)
T ss_pred             CCCEEEEEEEecCCC-CCCceeEEEEEeHHHhh
Confidence            567899999998875 46899999999999986

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=98.87  E-value=1.4e-08  Score=91.76  Aligned_cols=91  Identities=16%  Similarity=0.195  Sum_probs=72.8

Q ss_pred             EEEEEEecCCCCCCC--CCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc---eeeeecc-CCCCC--CccceeEE
Q 005736          297 VYVRVISASKLSRSS--LRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE---LTRRTDA-RPGSD--PRWDSMFN  368 (680)
Q Consensus       297 L~V~v~~a~~L~~~d--~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~---~~~~T~v-~~t~n--P~Wne~f~  368 (680)
                      |||.|.+|++++..+  ..|.                    ...||||++.+..   ..++|.+ ++++|  |.||+.|.
T Consensus         2 LRViIw~~~~v~~~~~~~~g~--------------------~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfv   61 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGE--------------------KMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFV   61 (133)
T ss_pred             EEEEEEECcCCcccccccCCc--------------------cccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEE
Confidence            899999999966543  3332                    1249999999874   5688888 68999  99999999


Q ss_pred             EEEec---------------------C---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          369 MVLHE---------------------E---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       369 ~~v~~---------------------~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      |.+.-                     .   ...|.++|||.|.. ++|++||++.++|..+.+.
T Consensus        62 F~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~-s~dd~iG~~~l~l~~l~~~  124 (133)
T cd08374          62 FPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKF-SPDDFLGSLELDLSILPRP  124 (133)
T ss_pred             EeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECccc-CCCCcceEEEEEhhhcccc
Confidence            88654                     1   34699999999997 6999999999999998643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02223 phosphoinositide phospholipase C

Probab=98.86  E-value=3e-08  Score=108.00  Aligned_cols=99  Identities=19%  Similarity=0.309  Sum_probs=80.6

Q ss_pred             cEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEE
Q 005736          488 RKINVTVVEGKDLMPK-----DKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYN  555 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~-----~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d  555 (680)
                      ..|.|+|+.+.+++..     +....+||||+|.+.     ...++|.+. ++.||.|||+|.|.+..+ -..|+|+|+|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D  488 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD  488 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence            4799999999987411     223568999999993     346678777 999999999999999876 5689999999


Q ss_pred             ecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736          556 EEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  589 (680)
Q Consensus       556 ~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  589 (680)
                      +|.. +++++|+..+|+..+..+-   ++++|.+.
T Consensus       489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~  520 (537)
T PLN02223        489 YEVSTADAFCGQTCLPVSELIEGI---RAVPLYDE  520 (537)
T ss_pred             cCCCCCCcEEEEEecchHHhcCCc---eeEeccCC
Confidence            9987 8999999999999998765   55677653

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.77  E-value=3.1e-08  Score=84.06  Aligned_cols=84  Identities=21%  Similarity=0.301  Sum_probs=71.9

Q ss_pred             EEEEEEEeecCCCCC---CCCCCCcEEEEEECC-EEEeeeccCCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeE
Q 005736          490 INVTVVEGKDLMPKD---KSGKCDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMG  565 (680)
Q Consensus       490 L~V~I~~a~~L~~~~---~~~~~dpyv~v~l~~-~~~~T~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG  565 (680)
                      |.|+|..++|+...+   ..+.++|||.+.+++ ++.||++  +.||.|||+|.|.+ +....+.+.|||......-.||
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~--srnd~WnE~F~i~V-dk~nEiel~VyDk~~~~~~Pi~   77 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP--SRNDRWNEDFEIPV-EKNNEEEVIVYDKGGDQPVPVG   77 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC--CCCCcccceEEEEe-cCCcEEEEEEEeCCCCeeccee
Confidence            579999999998777   578899999999976 4888887  58999999999999 4688899999999765566899


Q ss_pred             EEEEEcccccC
Q 005736          566 SARVNLEGLVE  576 (680)
Q Consensus       566 ~~~i~L~~l~~  576 (680)
                      ..-+.++++.+
T Consensus        78 llW~~~sdi~E   88 (109)
T cd08689          78 LLWLRLSDIAE   88 (109)
T ss_pred             eehhhHHHHHH
Confidence            99999998763

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.72  E-value=4.8e-08  Score=82.87  Aligned_cols=87  Identities=16%  Similarity=0.259  Sum_probs=68.6

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeeccCCCCCCccceeEEEEEecCC
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDARPGSDPRWDSMFNMVLHEET  375 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v~~t~nP~Wne~f~~~v~~~~  375 (680)
                      |.|+|..|+++...+....+                   +.+||||.+++++. +.+|+.  +.||.|||+|.|.|+ ..
T Consensus         1 L~I~V~~~RdvdH~~~~~~~-------------------~~~etyV~IKved~~kaRTr~--srnd~WnE~F~i~Vd-k~   58 (109)
T cd08689           1 LTITITSARDVDHIASPRFS-------------------KRPETYVSIKVEDVERARTKP--SRNDRWNEDFEIPVE-KN   58 (109)
T ss_pred             CEEEEEEEecCccccchhhc-------------------cCCCcEEEEEECCEEEEeccC--CCCCcccceEEEEec-CC
Confidence            67999999999887632111                   12499999999976 667766  589999999999994 56


Q ss_pred             CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          376 GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       376 ~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      ..+.+.|||+..  ...-.+|...+.++++..
T Consensus        59 nEiel~VyDk~~--~~~~Pi~llW~~~sdi~E   88 (109)
T cd08689          59 NEEEVIVYDKGG--DQPVPVGLLWLRLSDIAE   88 (109)
T ss_pred             cEEEEEEEeCCC--CeecceeeehhhHHHHHH
Confidence            789999999765  366788999999998853

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02223 phosphoinositide phospholipase C

Probab=98.70  E-value=7.6e-08  Score=104.90  Aligned_cols=94  Identities=13%  Similarity=0.182  Sum_probs=73.5

Q ss_pred             CeEEEEEEEecCCCCCC--CCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccce
Q 005736          294 GGIVYVRVISASKLSRS--SLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDS  365 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~--d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne  365 (680)
                      ...|.|+|+.|+++...  ...+..                   ..+||||+|.+.+     ..++|.+ .|+.||+|||
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~-------------------s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne  468 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRL-------------------SKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGE  468 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCC-------------------CCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecc
Confidence            36799999999988521  111110                   1259999999863     3556777 6899999999


Q ss_pred             eEEEEEecCCC-eEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          366 MFNMVLHEETG-TVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       366 ~f~~~v~~~~~-~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      +|.|.+..++- .|+|+|+|+|.. .+|+++|++.+|+..|..
T Consensus       469 ~F~F~i~~PELAlLrf~V~D~D~~-~~ddfiGQ~~LPv~~Lr~  510 (537)
T PLN02223        469 EFTFPLTYPDLALISFEVYDYEVS-TADAFCGQTCLPVSELIE  510 (537)
T ss_pred             eeEEEEEccCceEEEEEEEecCCC-CCCcEEEEEecchHHhcC
Confidence            99999988764 599999999975 589999999999999964

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.70  E-value=5.9e-08  Score=109.46  Aligned_cols=86  Identities=16%  Similarity=0.213  Sum_probs=74.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc---CCCCCCccceeEEEEEe
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA---RPGSDPRWDSMFNMVLH  372 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v---~~t~nP~Wne~f~~~v~  372 (680)
                      .++|.|++|-+|.+.|..|.+                      |||+.+.+|+.....+.   .+|+||++.+.|++...
T Consensus       614 LvrVyvv~A~~L~p~D~ng~a----------------------dpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~  671 (1105)
T KOG1326|consen  614 LVRVYVVEAFSLQPSDGNGDA----------------------DPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECL  671 (1105)
T ss_pred             eEEEEEEEeeeccccCCCCCc----------------------CceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcc
Confidence            667999999999999987764                      99999999987644442   68999999999999988


Q ss_pred             cCC-CeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736          373 EET-GTVRFNLYECIPGHVKYDYLTSCEVKMKY  404 (680)
Q Consensus       373 ~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~  404 (680)
                      -.. ..+.+.|||+|.. ..|+.+|+..++|..
T Consensus       672 lp~ek~l~v~vyd~D~~-~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  672 LPFEKDLIVEVYDHDLE-AQDEKIGETTIDLEN  703 (1105)
T ss_pred             cchhhcceeEEEEeecc-cccchhhceehhhhh
Confidence            774 4599999999997 689999999999875

>PLN02952 phosphoinositide phospholipase C

Probab=98.67  E-value=2.8e-07  Score=102.71  Aligned_cols=100  Identities=20%  Similarity=0.243  Sum_probs=81.8

Q ss_pred             CcEEEEEEEEeecCCCC------CCCCCCCcEEEEEE-C----CEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEE
Q 005736          487 GRKINVTVVEGKDLMPK------DKSGKCDPYVKLQY-G----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKC  553 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~------~~~~~~dpyv~v~l-~----~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V  553 (680)
                      ...|.|+|+.|.+++..      +....+||||+|.+ |    ....+|+++ ++.||.|||+|.|.+..+ -..++|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            35899999999987421      11234699999999 2    467799999 889999999999998875 46799999


Q ss_pred             EEecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736          554 YNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  589 (680)
Q Consensus       554 ~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  589 (680)
                      ||+|.. .++++|+..+|+..+..+.   +|++|.+.
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~  582 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDK  582 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCC
Confidence            999887 8999999999999998765   58898753

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.63  E-value=3.1e-07  Score=102.12  Aligned_cols=99  Identities=20%  Similarity=0.310  Sum_probs=80.2

Q ss_pred             cEEEEEEEEeecCCCC------CCCCCCCcEEEEEE-C----CEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEE
Q 005736          488 RKINVTVVEGKDLMPK------DKSGKCDPYVKLQY-G----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCY  554 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~------~~~~~~dpyv~v~l-~----~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~  554 (680)
                      ..|.|+|+.+.+++..      +....+||||+|.+ |    ....+|++. ++.||.|||+|.|.+..+ -..|+|+|+
T Consensus       469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~  548 (598)
T PLN02230        469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH  548 (598)
T ss_pred             cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence            4799999999987421      22245799999999 2    356789988 999999999999998876 578999999


Q ss_pred             EecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736          555 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  589 (680)
Q Consensus       555 d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  589 (680)
                      |+|.. +|+++|+..+|+..|..+-.   .++|.+.
T Consensus       549 d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~  581 (598)
T PLN02230        549 EHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNR  581 (598)
T ss_pred             ECCCCCCCCEEEEEEcchHHhhCccc---eEeccCC
Confidence            99987 89999999999999987653   4567553

>PLN02270 phospholipase D alpha

Probab=98.61  E-value=3.4e-07  Score=103.85  Aligned_cols=133  Identities=17%  Similarity=0.238  Sum_probs=92.7

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCcc-ccccCCCCCCeEEEEEEcc-eeeeecc-CC-CCCCccceeEEE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSL-EEHYEDKDLTTFVEIELEE-LTRRTDA-RP-GSDPRWDSMFNM  369 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~-~~~~~d~~~dpyv~v~~~~-~~~~T~v-~~-t~nP~Wne~f~~  369 (680)
                      -|.|.|+|.+|++|++.+..+.. +|-.    .... ....+..++|||++|.+++ ...||++ .+ ..||.|||+|.+
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i   81 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFL-GKLV----ANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHI   81 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHH-HHHH----hccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEE
Confidence            39999999999999874321100 0000    0000 0011223459999999985 5679998 55 469999999999


Q ss_pred             EEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc----e-
Q 005736          370 VLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN----S-  444 (680)
Q Consensus       370 ~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~----~-  444 (680)
                      .+......+.|.|.|.|..  ...+||++.+|..++..                      |+..+.|+++.+.+    + 
T Consensus        82 ~~ah~~~~v~f~vkd~~~~--g~~~ig~~~~p~~~~~~----------------------g~~i~~~~~~~~~~~~p~~~  137 (808)
T PLN02270         82 YCAHMASNIIFTVKDDNPI--GATLIGRAYIPVEEILD----------------------GEEVDRWVEILDNDKNPIHG  137 (808)
T ss_pred             eeccCcceEEEEEecCCcc--CceEEEEEEEEHHHhcC----------------------CCccccEEeccCCCCCcCCC
Confidence            9999889999999998775  66799999999999864                      34566777775433    2 


Q ss_pred             -eeEEEEEEEee
Q 005736          445 -GELTVRLVLKE  455 (680)
Q Consensus       445 -G~l~~~l~l~~  455 (680)
                       ..|++++.+.+
T Consensus       138 ~~~~~~~~~f~~  149 (808)
T PLN02270        138 GSKIHVKLQYFE  149 (808)
T ss_pred             CCEEEEEEEEEE
Confidence             25777776654

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.59  E-value=7e-07  Score=99.23  Aligned_cols=100  Identities=18%  Similarity=0.211  Sum_probs=80.0

Q ss_pred             CcEEEEEEEEeecCC--C----CCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEE
Q 005736          487 GRKINVTVVEGKDLM--P----KDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKC  553 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~--~----~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V  553 (680)
                      ...|+|+|+.+.++.  .    .+....+||||+|.+-     ....+|+++ ++.||.|||+|+|.+..+ -..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            347999999998752  1    1123467999999992     357799999 889999999999998865 57899999


Q ss_pred             EEecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736          554 YNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  589 (680)
Q Consensus       554 ~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  589 (680)
                      +|+|.. .++++|+..+|+..|..+-   +.++|.+.
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~  564 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSR  564 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCC
Confidence            999876 8999999999999998765   34567553

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.57  E-value=2e-07  Score=98.92  Aligned_cols=123  Identities=19%  Similarity=0.293  Sum_probs=96.4

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccc-eeEEEEEe
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWD-SMFNMVLH  372 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wn-e~f~~~v~  372 (680)
                      |.|.|+|..||+|+-+|....                     .-|.||++++++..++|.+ .+++||.|| +.|.|.|.
T Consensus         3 gkl~vki~a~r~lpvmdkasd---------------------~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevd   61 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASD---------------------LTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVD   61 (1169)
T ss_pred             CcceeEEEeccCCcccccccc---------------------cchheeEEEecccceehhhhhhhcCCcccccceEEecC
Confidence            889999999999999986432                     2489999999999999999 799999999 67999999


Q ss_pred             cC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc---eee
Q 005736          373 EE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN---SGE  446 (680)
Q Consensus       373 ~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~---~G~  446 (680)
                      +.   ++.|.+.+.|+|.. +.+|-||.+.|++.-|.....          ..+-|-+  |.....|+|+-+.-   +|+
T Consensus        62 dadlqdeplqi~lld~dty-sandaigkv~i~idpl~~e~a----------aqavhgk--gtvisgw~pifdtihgirge  128 (1169)
T KOG1031|consen   62 DADLQDEPLQIRLLDHDTY-SANDAIGKVNIDIDPLCLEEA----------AQAVHGK--GTVISGWFPIFDTIHGIRGE  128 (1169)
T ss_pred             hhhhccCCeeEEEeccccc-ccccccceeeeccChHHHHhH----------HhhhcCC--ceEEeeeeecceecccccce
Confidence            85   45799999999997 699999999999988753221          0011111  55677899876543   578


Q ss_pred             EEEEE
Q 005736          447 LTVRL  451 (680)
Q Consensus       447 l~~~l  451 (680)
                      +.+-+
T Consensus       129 inviv  133 (1169)
T KOG1031|consen  129 INVIV  133 (1169)
T ss_pred             eEEEE
Confidence            77544

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.54  E-value=3.7e-07  Score=101.42  Aligned_cols=97  Identities=19%  Similarity=0.348  Sum_probs=80.5

Q ss_pred             EEEEEEEEeecCCCCCC----CCCCCcEEEEEEC-----CEEEeeecc--CCCCCeeeeEEEEEeeCC-ceEEEEEEEEe
Q 005736          489 KINVTVVEGKDLMPKDK----SGKCDPYVKLQYG-----KIVQRTRTA--HSPNHVWNQKFELDEIGG-GECLMVKCYNE  556 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~----~~~~dpyv~v~l~-----~~~~~T~~~--~t~nP~wne~f~f~v~~~-~~~L~i~V~d~  556 (680)
                      +|.|.|+.+.++.+...    ....||||.|.+-     ....+|+++  ++-||.|+|+|+|.+..+ -+-|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            79999999997754322    2468999999993     357899955  999999999999999986 57899999999


Q ss_pred             cCC-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          557 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       557 ~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                      |.. +|+|+|+.++|+..|..+-.+   ++|.+
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~  726 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLS  726 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceee---eeecC
Confidence            988 899999999999999876544   56655

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.51  E-value=3.6e-07  Score=96.99  Aligned_cols=112  Identities=21%  Similarity=0.453  Sum_probs=94.5

Q ss_pred             cEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCEEEeeecc-CCCCCeee-eEEEEEeeC---CceEEEEEEEEecCC-C
Q 005736          488 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWN-QKFELDEIG---GGECLMVKCYNEEIF-G  560 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wn-e~f~f~v~~---~~~~L~i~V~d~~~~-~  560 (680)
                      |.|.|.|..+|+|+.+|. +...|.||++.+++..++|.+. +++||.|| +.|.|.+.+   ..+.|.|.+.|+|.. .
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa   82 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA   82 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence            479999999999998885 4568999999999999999999 99999999 579999987   367899999999998 8


Q ss_pred             CceeEEEEEEcccccC----------CCeeeEEEeCCCC---CCeEEEEEEE
Q 005736          561 DENMGSARVNLEGLVE----------GSVRDIWVPLEKV---NTGELRLQIE  599 (680)
Q Consensus       561 d~~iG~~~i~L~~l~~----------~~~~~~w~~L~~~---~~G~i~l~l~  599 (680)
                      ++.||.+.|+++.+..          +.....|+++-+.   -+|+|.+-+.
T Consensus        83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk  134 (1169)
T KOG1031|consen   83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK  134 (1169)
T ss_pred             ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence            9999999999987652          2345789998764   2578776654

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.49  E-value=3.8e-07  Score=101.40  Aligned_cols=94  Identities=16%  Similarity=0.199  Sum_probs=74.6

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeec-c-CCCCCCccceeEE
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTD-A-RPGSDPRWDSMFN  368 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~-v-~~t~nP~Wne~f~  368 (680)
                      .|.|+|..+.++...-..+.                  .+...||||.|++-+     ...+|+ + .|+-||.|+|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~------------------~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~  678 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTK------------------FGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFE  678 (746)
T ss_pred             eeEEEEEecCcccCCCCCCc------------------ccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEE
Confidence            79999999997665421111                  023459999998753     467888 4 5899999999999


Q ss_pred             EEEecCCC-eEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          369 MVLHEETG-TVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       369 ~~v~~~~~-~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      |.+..+.- .|+|.|+|+|.. .+|||+|+..+|+..|.++
T Consensus       679 F~l~vPELAliRF~V~d~d~~-~~ddF~GQ~tlP~~~L~~G  718 (746)
T KOG0169|consen  679 FQLSVPELALIRFEVHDYDYI-GKDDFIGQTTLPVSELRQG  718 (746)
T ss_pred             EEEeccceeEEEEEEEecCCC-CcccccceeeccHHHhhCc
Confidence            99999865 589999999986 6899999999999999643

>PLN02228 Phosphoinositide phospholipase C

Probab=98.48  E-value=2e-06  Score=95.42  Aligned_cols=112  Identities=19%  Similarity=0.167  Sum_probs=85.8

Q ss_pred             CcEEEEEEEEeecCCC---CC---CCCCCCcEEEEEE-----CCEEEeeecc-CCCCCee-eeEEEEEeeCC-ceEEEEE
Q 005736          487 GRKINVTVVEGKDLMP---KD---KSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVW-NQKFELDEIGG-GECLMVK  552 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~---~~---~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~w-ne~f~f~v~~~-~~~L~i~  552 (680)
                      ...|.|+|+.|.+|+.   .+   ....+||||+|.+     +...++|+++ ++.||.| ||+|.|.+..+ -..|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            3479999999998731   11   2245899999999     2356799999 8899999 99999998875 5789999


Q ss_pred             EEEecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCCC-----CeEEEEEEEEE
Q 005736          553 CYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEAT  601 (680)
Q Consensus       553 V~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~~  601 (680)
                      |+|+|.. .++++|+..+|+..|..+-   +.++|.+..     ...|.+++.+.
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~  561 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALD  561 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEc
Confidence            9999876 8999999999999997665   345675532     24566665544

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.48  E-value=6.4e-07  Score=99.66  Aligned_cols=94  Identities=15%  Similarity=0.120  Sum_probs=72.9

Q ss_pred             eEEEEEEEecCCCCCCCC--CCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCcccee
Q 005736          295 GIVYVRVISASKLSRSSL--RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPRWDSM  366 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~--~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wne~  366 (680)
                      ..|.|+|+.+.++.....  ....                  -..+||||+|.+-     ...++|++ .++.||.|||+
T Consensus       469 ~~L~V~VisGq~~~l~~~k~~~~~------------------~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wnee  530 (598)
T PLN02230        469 KTLKVKVCMGDGWLLDFKKTHFDS------------------YSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKE  530 (598)
T ss_pred             cEEEEEEEEccCccCCCccccCCC------------------CCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCe
Confidence            579999999998753211  0000                  0125999999984     24568888 68999999999


Q ss_pred             EEEEEecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          367 FNMVLHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       367 f~~~v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      |.|.+.-+. ..|+|+|+|+|.. .+|+++|++.+|+..|..
T Consensus       531 f~F~l~vPELAllRf~V~d~d~~-~~ddfiGQ~~lPv~~Lr~  571 (598)
T PLN02230        531 FIFPLAVPELALLRVEVHEHDIN-EKDDFGGQTCLPVSEIRQ  571 (598)
T ss_pred             eEEEEEcCceeEEEEEEEECCCC-CCCCEEEEEEcchHHhhC
Confidence            999988765 4699999999875 589999999999999964

>PLN02952 phosphoinositide phospholipase C

Probab=98.45  E-value=9.6e-07  Score=98.48  Aligned_cols=97  Identities=13%  Similarity=0.121  Sum_probs=73.4

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCccceeE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPRWDSMF  367 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wne~f  367 (680)
                      ...|.|+|+.|.+++........         +.       -..+||||+|.+-     ..+++|++ .++.||+|||+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~---------~~-------~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F  532 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHF---------DS-------YSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEF  532 (599)
T ss_pred             cceEEEEEEECcccCCCCccccC---------Cc-------cCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCee
Confidence            36899999999988532100000         00       0125999999884     35678887 777999999999


Q ss_pred             EEEEecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          368 NMVLHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       368 ~~~v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      .|.+..+. ..|+|+|+|+|.. ..|+++|++.+|+..|..
T Consensus       533 ~F~i~~PELAllrf~V~D~D~~-~~ddfiGq~~lPv~~Lr~  572 (599)
T PLN02952        533 SFPLTVPELALLRIEVREYDMS-EKDDFGGQTCLPVSELRP  572 (599)
T ss_pred             EEEEEcCCccEEEEEEEecCCC-CCCCeEEEEEcchhHhcC
Confidence            99988764 4699999999886 589999999999999964

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.45  E-value=1.1e-06  Score=96.79  Aligned_cols=117  Identities=21%  Similarity=0.311  Sum_probs=90.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc--CCCCCeee-eEEEEEeeCC-ceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA--HSPNHVWN-QKFELDEIGG-GECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~--~t~nP~wn-e~f~f~v~~~-~~~L~i~V~d~~~  558 (680)
                      -.|.|.|+.||.|+... .+...|||+|.+     +..+++|.++  +++||+|| |.|+|.+.++ -..|+|.|+|.|.
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            47899999999998433 466789999999     2345555554  99999999 9999999987 6789999999999


Q ss_pred             C-CCceeEEEEEEcccccCCCeeeEEEeCCCCC-----CeEEEEEEEEEEecCCCC
Q 005736          559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEATRVDDNEG  608 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~~~~~~~~~  608 (680)
                      + ...|||++..|+..+..+-   +-.+|.+.-     -..+.+.++..++..+++
T Consensus      1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~~~~~~~ 1196 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEMRPVLESEE 1196 (1267)
T ss_pred             cCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEeccccCccc
Confidence            9 5679999999999887553   345676642     255677777776655544

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.44  E-value=1.2e-07  Score=103.25  Aligned_cols=73  Identities=18%  Similarity=0.235  Sum_probs=65.1

Q ss_pred             CeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccCCCCCCCEEEEEECC-------eEEeeeeeecCCC
Q 005736          591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-------LKKRTKLTVACLS  663 (680)
Q Consensus       591 ~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~~g~~DPyV~v~lg~-------~~~kT~~~k~tln  663 (680)
                      .|.+.+++.|.              -....|.|.|+.|+|+.+.|.+|.+||||.|.++.       ...||+++++|+|
T Consensus       933 fg~lsvr~~y~--------------~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLn  998 (1103)
T KOG1328|consen  933 FGVLSVRAYYN--------------GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLN  998 (1103)
T ss_pred             CCceEEEEEee--------------ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhcccc
Confidence            58888888887              55578999999999999999999999999999975       3689999999999


Q ss_pred             CcccceeEEEecCC
Q 005736          664 GHIQNSKSSMASNL  677 (680)
Q Consensus       664 P~wnE~f~f~V~n~  677 (680)
                      |+|+|+|+|.|.-.
T Consensus       999 PVfDE~FeFsVp~e 1012 (1103)
T KOG1328|consen  999 PVFDETFEFSVPPE 1012 (1103)
T ss_pred             chhhhheeeecCcc
Confidence            99999999998643

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.40  E-value=1.7e-06  Score=96.26  Aligned_cols=94  Identities=12%  Similarity=0.144  Sum_probs=71.7

Q ss_pred             eEEEEEEEecCCCCC--CCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCcccee
Q 005736          295 GIVYVRVISASKLSR--SSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPRWDSM  366 (680)
Q Consensus       295 G~L~V~v~~a~~L~~--~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wne~  366 (680)
                      ..|+|+|+.|.++.-  ......                  +...+||||+|.+-     ..+++|++ .++.||.|||+
T Consensus       452 ~~L~V~Visgq~~~l~~~~~~~~------------------~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~  513 (581)
T PLN02222        452 TTLRVTIYMGEGWYFDFRHTHFD------------------QYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEV  513 (581)
T ss_pred             ceEEEEEEEcccccCCCCccccC------------------CCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCe
Confidence            579999999987531  111110                  01136999999985     34678887 77789999999


Q ss_pred             EEEEEecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          367 FNMVLHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       367 f~~~v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      |.|.+.-+. ..|+|.|+|+|.. ..|+++|++.+|+..|..
T Consensus       514 f~F~i~~PeLAllRf~V~d~D~~-~~ddfigq~~lPv~~Lr~  554 (581)
T PLN02222        514 FEFPLTVPELALLRLEVHEYDMS-EKDDFGGQTCLPVWELSQ  554 (581)
T ss_pred             eEEEEEcCceeEEEEEEEECCCC-CCCcEEEEEEcchhhhhC
Confidence            999988765 4699999999875 589999999999999964

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.31  E-value=1.8e-07  Score=101.84  Aligned_cols=87  Identities=24%  Similarity=0.421  Sum_probs=78.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------EEEeeecc-CCCCCeeeeEEEEEeeCC-----ceEEEEEEEE
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-------IVQRTRTA-HSPNHVWNQKFELDEIGG-----GECLMVKCYN  555 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-------~~~~T~~~-~t~nP~wne~f~f~v~~~-----~~~L~i~V~d  555 (680)
                      .|.|.|+.|+++.+.|.+|.+||||.|.++.       ..++|+++ +|+||+|+|.|+|.|+..     ...|.|+|+|
T Consensus       948 ~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMD 1027 (1103)
T KOG1328|consen  948 TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMD 1027 (1103)
T ss_pred             chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeec
Confidence            6889999999999999999999999999953       47899999 999999999999998852     4589999999


Q ss_pred             ecCC-CCceeEEEEEEccccc
Q 005736          556 EEIF-GDENMGSARVNLEGLV  575 (680)
Q Consensus       556 ~~~~-~d~~iG~~~i~L~~l~  575 (680)
                      +|-. .++|-|++.+.|.++.
T Consensus      1028 HD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1028 HDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             cceecccccchHHHHhhCCCC
Confidence            9988 8999999999999876

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.30  E-value=7.9e-07  Score=101.61  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=88.6

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEEe
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNE  556 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d~  556 (680)
                      .+.|.|-|.-+++|+-...+..+||||+.++-     ..+.||+++ +|.||.|||...+.-..    .+..|.++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            45899999999999776667889999999992     367899999 99999999999887332    367899999999


Q ss_pred             cCC-CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736          557 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  589 (680)
Q Consensus       557 ~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  589 (680)
                      +.. .+.++|.+.|+|.++........||+|...
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence            988 889999999999998877777799999764

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.28  E-value=2.9e-06  Score=93.75  Aligned_cols=89  Identities=21%  Similarity=0.307  Sum_probs=71.3

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc------eeeeecc-CCCCCCccc-ee
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE------LTRRTDA-RPGSDPRWD-SM  366 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~------~~~~T~v-~~t~nP~Wn-e~  366 (680)
                      =.|.|+|+.||+|+....+-                       +-|+|+|.+-+      ..++|.+ .|++||+|| |+
T Consensus      1065 ~~lsv~vigaRHL~k~gr~i-----------------------~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ 1121 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSI-----------------------ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEK 1121 (1267)
T ss_pred             eEEEEEEeeccccccCCCCc-----------------------cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcc
Confidence            47889999999999543211                       35999998742      2344445 799999999 99


Q ss_pred             EEEEEecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          367 FNMVLHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       367 f~~~v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      |+|.+.++. ..|+|.|+|.|-. +...|||++.+|++.+..
T Consensus      1122 ftFeI~nPe~A~lRF~V~eeDmf-s~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1122 FTFEIYNPEFAFLRFVVYEEDMF-SDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred             eEEEeeCCceEEEEEEEeccccc-CCcceeeeeecchhhhhc
Confidence            999999985 5799999999986 567899999999998853

>PLN02228 Phosphoinositide phospholipase C

Probab=98.25  E-value=4.8e-06  Score=92.39  Aligned_cols=96  Identities=14%  Similarity=0.167  Sum_probs=71.5

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCcc-ceeE
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRW-DSMF  367 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~W-ne~f  367 (680)
                      ..|+|+|++|++|+..-.....         +       .....||||+|.+-+     ..++|++ .++.||.| ||+|
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~---------~-------~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f  494 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHF---------D-------QYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEF  494 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCC---------C-------CCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeE
Confidence            4699999999987421000000         0       001259999998852     3568887 67899999 9999


Q ss_pred             EEEEecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          368 NMVLHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       368 ~~~v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      .|.+..+. ..|+|.|+|+|.. ..|+++|++.+|+..|..
T Consensus       495 ~F~~~~pELA~lRf~V~D~d~~-~~d~figq~~lPv~~Lr~  534 (567)
T PLN02228        495 LFQLRVPELALLWFKVQDYDND-TQNDFAGQTCLPLPELKS  534 (567)
T ss_pred             EEEEEcCceeEEEEEEEeCCCC-CCCCEEEEEEcchhHhhC
Confidence            99988765 4699999999865 589999999999999964

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.24  E-value=9.8e-06  Score=87.86  Aligned_cols=176  Identities=21%  Similarity=0.340  Sum_probs=119.9

Q ss_pred             eecc-CCCCCCccceeEEEEEec-CCCeEEEEEEEeCCCC---CCCceeEEEEEecccccCCCceeeeeCCCcchhhhhh
Q 005736          352 RTDA-RPGSDPRWDSMFNMVLHE-ETGTVRFNLYECIPGH---VKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHA  426 (680)
Q Consensus       352 ~T~v-~~t~nP~Wne~f~~~v~~-~~~~l~l~v~d~d~~~---~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~  426 (680)
                      +|.+ .+.+||.|.+.|.+...- ..|.+++.++|.+...   ...+++|+++..+..+......           ....
T Consensus        44 rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~-----------~~~l  112 (529)
T KOG1327|consen   44 RTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL-----------TGPL  112 (529)
T ss_pred             ceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh-----------hhhh
Confidence            5554 899999999999887654 4789999999977641   3679999999999988643210           0000


Q ss_pred             hccCceeeeeeccCCCceeeEEEEEEEeeeecCCCCCCCCCCcCCCCCcccccccccCCCCcEEEEEEEEeecCCCCCCC
Q 005736          427 EFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKS  506 (680)
Q Consensus       427 ~~~g~~~~~~~~l~~~~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~~~~  506 (680)
                              +-.+-.....|.+.+...       +..                       .......-..+|++|..++..
T Consensus       113 --------~~~~~~~~~~g~iti~ae-------e~~-----------------------~~~~~~~~~~~~~~ld~kd~f  154 (529)
T KOG1327|consen  113 --------LLKPGKNAGSGTITISAE-------EDE-----------------------SDNDVVQFSFRAKNLDPKDFF  154 (529)
T ss_pred             --------hcccCccCCcccEEEEee-------ccc-----------------------ccCceeeeeeeeeecCccccc
Confidence                    000001222455554431       000                       000233334568999999999


Q ss_pred             CCCCcEEEEEEC------CEEEeeecc-CCCCCeeeeEEE----EEeeCCceEEEEEEEEecCC-CCceeEEEEEEcccc
Q 005736          507 GKCDPYVKLQYG------KIVQRTRTA-HSPNHVWNQKFE----LDEIGGGECLMVKCYNEEIF-GDENMGSARVNLEGL  574 (680)
Q Consensus       507 ~~~dpyv~v~l~------~~~~~T~~~-~t~nP~wne~f~----f~v~~~~~~L~i~V~d~~~~-~d~~iG~~~i~L~~l  574 (680)
                      +++|||..++--      ...++|.++ ++++|.|.+...    +...++...+.+.+||++.. ++++||.+..++.++
T Consensus       155 ~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~  234 (529)
T KOG1327|consen  155 SKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSEL  234 (529)
T ss_pred             ccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHh
Confidence            999999998861      257899999 999999975322    11223467899999999988 779999999999887


Q ss_pred             cC
Q 005736          575 VE  576 (680)
Q Consensus       575 ~~  576 (680)
                      ..
T Consensus       235 ~~  236 (529)
T KOG1327|consen  235 QE  236 (529)
T ss_pred             cc
Confidence            53

>PLN02352 phospholipase D epsilon

Probab=98.17  E-value=2.5e-05  Score=88.82  Aligned_cols=113  Identities=18%  Similarity=0.248  Sum_probs=88.2

Q ss_pred             cEEEEEEEEeecCCCC----C-CCCCCCcEEEEEECC-EEEeeeccCCCCCeeeeEEEEEeeCCc-eEEEEEEEEecCCC
Q 005736          488 RKINVTVVEGKDLMPK----D-KSGKCDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGGG-ECLMVKCYNEEIFG  560 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~----~-~~~~~dpyv~v~l~~-~~~~T~~~~t~nP~wne~f~f~v~~~~-~~L~i~V~d~~~~~  560 (680)
                      |.|.++|.+|+-+...    . .....+|||.|.+++ .+.||  .+..||.|+|.|.+.+.... ..+.|.|.|.    
T Consensus        10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt--~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~----   83 (758)
T PLN02352         10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT--SHEYDRVWNQTFQILCAHPLDSTITITLKTK----   83 (758)
T ss_pred             cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC--CCCCCCccccceeEEeeeecCCcEEEEEecC----
Confidence            5899999999843221    0 012239999999965 67788  52349999999999998765 6899999883    


Q ss_pred             CceeEEEEEEcccccCCCe-eeEEEeCCCCC----C-eEEEEEEEEEEecCC
Q 005736          561 DENMGSARVNLEGLVEGSV-RDIWVPLEKVN----T-GELRLQIEATRVDDN  606 (680)
Q Consensus       561 d~~iG~~~i~L~~l~~~~~-~~~w~~L~~~~----~-G~i~l~l~~~~~~~~  606 (680)
                      ..+||.+.+|..++..+.. .+.|+++.+..    . .+|+++++|.++...
T Consensus        84 ~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  135 (758)
T PLN02352         84 CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE  135 (758)
T ss_pred             CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence            6799999999999988755 89999997642    3 499999999987654

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.09  E-value=1.8e-05  Score=85.80  Aligned_cols=135  Identities=21%  Similarity=0.235  Sum_probs=100.8

Q ss_pred             EEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCC-----CCceeEEEEEEcccccCCCeeeEEEeCC---CC
Q 005736          520 IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-----GDENMGSARVNLEGLVEGSVRDIWVPLE---KV  589 (680)
Q Consensus       520 ~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~-----~d~~iG~~~i~L~~l~~~~~~~~w~~L~---~~  589 (680)
                      +..+|.++ +.+||.|.+.|.....- ..+.+++.++|-+..     ..+|+|++...+..+........-+.++   ..
T Consensus        41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~  120 (529)
T KOG1327|consen   41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNA  120 (529)
T ss_pred             cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccC
Confidence            45588899 99999999998877553 478899999997653     5789999999999887544332223333   23


Q ss_pred             CCeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccCCCCCCCEEEEEEC--C----eEEeeeeeecCCC
Q 005736          590 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D----LKKRTKLTVACLS  663 (680)
Q Consensus       590 ~~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~~g~~DPyV~v~lg--~----~~~kT~~~k~tln  663 (680)
                      .+|.|.++++-.              ...........+|++|.+.|..+++|||..++--  .    ..++|.++++|+|
T Consensus       121 ~~g~iti~aee~--------------~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~  186 (529)
T KOG1327|consen  121 GSGTITISAEED--------------ESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLN  186 (529)
T ss_pred             CcccEEEEeecc--------------cccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCC
Confidence            568888877433              1122344445579999999999999999999873  2    4789999999999


Q ss_pred             Ccccc
Q 005736          664 GHIQN  668 (680)
Q Consensus       664 P~wnE  668 (680)
                      |.|-+
T Consensus       187 p~w~~  191 (529)
T KOG1327|consen  187 PQWAP  191 (529)
T ss_pred             Ccccc
Confidence            99954

>PLN02352 phospholipase D epsilon

Probab=97.95  E-value=6.3e-05  Score=85.63  Aligned_cols=116  Identities=15%  Similarity=0.237  Sum_probs=80.0

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-eeeeeccCCCCCCccceeEEEEEe
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDARPGSDPRWDSMFNMVLH  372 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-~~~~T~v~~t~nP~Wne~f~~~v~  372 (680)
                      -|.|.++|.+|+-+... .....               ..+ ...|||++|.+++ ...+|  .+..||+|+|+|.+.+.
T Consensus         9 hg~l~~~i~~~~~~~~~-~~~~~---------------~~~-~~~~~y~tv~~~~~~v~rt--~~~~~p~w~e~f~i~~a   69 (758)
T PLN02352          9 HGTLEATIFDATPYTPP-FPFNC---------------IFL-NGKATYVTIKIGNKKVAKT--SHEYDRVWNQTFQILCA   69 (758)
T ss_pred             ccceEEEEEEeeehhhc-ccccc---------------ccc-CCCCceEEEEeCCcEEecC--CCCCCCccccceeEEee
Confidence            49999999999832221 00000               000 0129999999985 45677  55669999999999998


Q ss_pred             cCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCc----ee-e
Q 005736          373 EET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN----SG-E  446 (680)
Q Consensus       373 ~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~----~G-~  446 (680)
                      ... ..+.|.|.|      ...+||++.+|..++..+.                     ...+.|+++.+.+    .| .
T Consensus        70 h~~~~~~~f~vk~------~~~~ig~~~~p~~~~~~g~---------------------~~~~~~~~~~~~~~~p~~~~~  122 (758)
T PLN02352         70 HPLDSTITITLKT------KCSILGRFHIQAHQIVTEA---------------------SFINGFFPLIMENGKPNPELK  122 (758)
T ss_pred             eecCCcEEEEEec------CCeEEEEEEEEHHHhhCCC---------------------cccceEEEcccCCCCCCCCCE
Confidence            876 689999976      3689999999999986431                     1256677775433    34 6


Q ss_pred             EEEEEEEee
Q 005736          447 LTVRLVLKE  455 (680)
Q Consensus       447 l~~~l~l~~  455 (680)
                      +++++.+.+
T Consensus       123 ~~~~~~~~~  131 (758)
T PLN02352        123 LRFMLWFRP  131 (758)
T ss_pred             EEEEEEEEE
Confidence            777776654

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.82  E-value=3.7e-05  Score=67.47  Aligned_cols=97  Identities=21%  Similarity=0.324  Sum_probs=73.7

Q ss_pred             EEEEEEEeecCCCCC-------C------CCCCCcEEEEEE----CCEEEeeecc-CCCCCeeeeEEEEEeeC-------
Q 005736          490 INVTVVEGKDLMPKD-------K------SGKCDPYVKLQY----GKIVQRTRTA-HSPNHVWNQKFELDEIG-------  544 (680)
Q Consensus       490 L~V~I~~a~~L~~~~-------~------~~~~dpyv~v~l----~~~~~~T~~~-~t~nP~wne~f~f~v~~-------  544 (680)
                      |.|.|++|.+|+..-       .      .-..|+||++.+    +++..+|+++ ++-.|.|+..++|.+.-       
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            356777777775211       0      123689999997    5688999999 99999999999999761       


Q ss_pred             ---------CceEEEEEEEEecCC-----------CCceeEEEEEEcccccC-CCeeeEEEeC
Q 005736          545 ---------GGECLMVKCYNEEIF-----------GDENMGSARVNLEGLVE-GSVRDIWVPL  586 (680)
Q Consensus       545 ---------~~~~L~i~V~d~~~~-----------~d~~iG~~~i~L~~l~~-~~~~~~w~~L  586 (680)
                               ....+.++||+....           +|-.||.+.||+.+|.. ......||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence                     134799999997642           45689999999999884 5566789875

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=97.71  E-value=3e-05  Score=89.16  Aligned_cols=67  Identities=22%  Similarity=0.304  Sum_probs=60.1

Q ss_pred             CeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCccccCCCCCCCEEEEEECC-----eEEeeeeeecCCCCc
Q 005736          591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKLTVACLSGH  665 (680)
Q Consensus       591 ~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~d~~g~~DPyV~v~lg~-----~~~kT~~~k~tlnP~  665 (680)
                      +|+|+++++|.                .|.|.|.|..|++|+-...+..+||||+.++-.     .|+||+++++|+||.
T Consensus      1512 ggqV~LsIsY~----------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PT 1575 (1639)
T KOG0905|consen 1512 GGQVKLSISYN----------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPT 1575 (1639)
T ss_pred             CceEEEEEEEc----------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCc
Confidence            57999999996                489999999999998877778899999999943     489999999999999


Q ss_pred             ccceeEEE
Q 005736          666 IQNSKSSM  673 (680)
Q Consensus       666 wnE~f~f~  673 (680)
                      |||.+.|.
T Consensus      1576 fnE~LvY~ 1583 (1639)
T KOG0905|consen 1576 FNEMLVYD 1583 (1639)
T ss_pred             hhhheeec
Confidence            99999875

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.65  E-value=3.9e-05  Score=62.44  Aligned_cols=93  Identities=17%  Similarity=0.158  Sum_probs=68.3

Q ss_pred             EEEEEEeecCCCCC-CCCCCCcEEEEEE--C-CEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCCCCc
Q 005736          491 NVTVVEGKDLMPKD-KSGKCDPYVKLQY--G-KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIFGDE  562 (680)
Q Consensus       491 ~V~I~~a~~L~~~~-~~~~~dpyv~v~l--~-~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~~d~  562 (680)
                      -+++++|+||.-.. ....+.-|++-.+  . ....+|.+. +..||.|.|+|.|.+..   +.-.|.|.|+.. ..+.+
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~-~~RKe   80 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ-TPRKR   80 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc-CCccc
Confidence            47899999995333 2344555666444  3 467899999 99999999999999764   366899999882 22789


Q ss_pred             eeEEEEEEcccccCCCeeeEEEe
Q 005736          563 NMGSARVNLEGLVEGSVRDIWVP  585 (680)
Q Consensus       563 ~iG~~~i~L~~l~~~~~~~~w~~  585 (680)
                      .||.|.+.|+++-. +...+|..
T Consensus        81 ~iG~~sL~l~s~ge-eE~~HW~e  102 (103)
T cd08684          81 TIGECSLSLRTLST-QETDHWLE  102 (103)
T ss_pred             eeeEEEeecccCCH-HHhhhhhc
Confidence            99999999998643 23445643

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PLN02964 phosphatidylserine decarboxylase

Probab=97.56  E-value=0.00012  Score=82.88  Aligned_cols=85  Identities=19%  Similarity=0.348  Sum_probs=71.0

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEE-EEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFV-EIELEELTRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv-~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      .|++.+++++|+    ++.                         .|||. .+++|.+.++|.+ ++|.||+|||...|+|
T Consensus        53 ~~~~~~~~~~~~----~~~-------------------------~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~  103 (644)
T PLN02964         53 SGIALLTLVGAE----MKF-------------------------KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLL  103 (644)
T ss_pred             cCeEEEEeehhh----hcc-------------------------CCcEEEEEEecceeeeeccccccCCcccchhhceEe
Confidence            499999999997    332                         16755 5678999999999 7999999999999999


Q ss_pred             ecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          372 HEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       372 ~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      .... ...++.|||.++. .+++.+|.|+++|.++...
T Consensus       104 ~~~~~~~~~~~~~~~~~~-s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        104 EKNGPHLARISVFETNRL-SKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             ccCCcceEEEEEEecCCC-CHHHhhhheeecHhhccHH
Confidence            8763 4579999999987 6999999999998777544

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.27  E-value=0.00039  Score=61.20  Aligned_cols=103  Identities=17%  Similarity=0.247  Sum_probs=70.0

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc----ceeeeecc-CCCCCCccceeEEEEE
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~----~~~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      |.|.|++|.+|+.....-..        .|+..+.. .+--+++||++.+.    +..++|++ -++--|.|+.+++|..
T Consensus         1 lsv~I~RA~GLqaAA~~la~--------~~~~l~y~-a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc   71 (143)
T cd08683           1 LSVQIHRASGLQAAARALAE--------QDPSLQYS-ATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPC   71 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhh--------hCcccccc-eecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEec
Confidence            46889999999764321100        11111111 12236899999964    56788887 7999999999999985


Q ss_pred             e--------c--------CCCeEEEEEEEeCCCC---------CCCceeEEEEEecccccCC
Q 005736          372 H--------E--------ETGTVRFNLYECIPGH---------VKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       372 ~--------~--------~~~~l~l~v~d~d~~~---------~~d~~lG~~~i~l~~l~~~  408 (680)
                      .        +        ....+.|+||+.+..+         .+|-.||.+.||+.+|...
T Consensus        72 ~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~  133 (143)
T cd08683          72 NLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK  133 (143)
T ss_pred             ccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence            5        1        1346899999977542         2567899999999999643

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02964 phosphatidylserine decarboxylase

Probab=97.05  E-value=0.00075  Score=76.52  Aligned_cols=86  Identities=16%  Similarity=0.229  Sum_probs=71.1

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEE-EEECCEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CC
Q 005736          486 TGRKINVTVVEGKDLMPKDKSGKCDPYVK-LQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GD  561 (680)
Q Consensus       486 ~~~~L~V~I~~a~~L~~~~~~~~~dpyv~-v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d  561 (680)
                      -.|++.+++++|+    ++   ..|+|.. +.+|.++++|.+. +|.||+||+...|.+... ....+|.|||.+.+ ++
T Consensus        52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n  124 (644)
T PLN02964         52 FSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKN  124 (644)
T ss_pred             ccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHH
Confidence            3569999999987    22   2478765 5569999999999 999999999999998763 45579999999998 89


Q ss_pred             ceeEEEEEEcccccCCC
Q 005736          562 ENMGSARVNLEGLVEGS  578 (680)
Q Consensus       562 ~~iG~~~i~L~~l~~~~  578 (680)
                      +++|.|.++|.++...+
T Consensus       125 ~lv~~~e~~~t~f~~kq  141 (644)
T PLN02964        125 TLVGYCELDLFDFVTQE  141 (644)
T ss_pred             HhhhheeecHhhccHHH
Confidence            99999999988776443

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.03  E-value=0.025  Score=59.51  Aligned_cols=175  Identities=15%  Similarity=0.162  Sum_probs=123.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC--------CceEEEEEEEEecCC-
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--------GGECLMVKCYNEEIF-  559 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~--------~~~~L~i~V~d~~~~-  559 (680)
                      +.+.|++|++.+...   ...-.+...++++...|..+ ++..|.||....+.+..        ....|++++|..+.. 
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            578999999998652   34567888899999999999 99999999999998763        356899999998833 


Q ss_pred             -CCceeEEEEEEcccc---cCC--CeeeEEEeCCCC------CCeEEEEEEEEEEecCC-------------CCCCC---
Q 005736          560 -GDENMGSARVNLEGL---VEG--SVRDIWVPLEKV------NTGELRLQIEATRVDDN-------------EGSRG---  611 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l---~~~--~~~~~w~~L~~~------~~G~i~l~l~~~~~~~~-------------~~~~~---  611 (680)
                       ..+.+|++.++|...   ..+  .....||+|-+.      .+-+|.+.+....-...             ++...   
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~  158 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP  158 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence             788999999999998   443  467899999765      24677777765432211             00000   


Q ss_pred             ---------------------ccCC-----CCCceEEEEEEEeecCcccc----C--CCCCCCEEEEEECCeEEeeeeee
Q 005736          612 ---------------------QNIG-----SGNGWIELVIVEARDLVAAD----L--RGTSDPYVKVQYGDLKKRTKLTV  659 (680)
Q Consensus       612 ---------------------~~~~-----~~~~~L~V~I~~a~~L~~~d----~--~g~~DPyV~v~lg~~~~kT~~~k  659 (680)
                                           -..+     .....|.|+|..|+||..+-    .  .+...-|...++-+....|..-+
T Consensus       159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~  238 (340)
T PF12416_consen  159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK  238 (340)
T ss_pred             ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc
Confidence                                 0011     12357888999999987651    1  12345566666656566677777


Q ss_pred             cCCCCccc
Q 005736          660 ACLSGHIQ  667 (680)
Q Consensus       660 ~tlnP~wn  667 (680)
                      +..+|.|-
T Consensus       239 ~l~~~~f~  246 (340)
T PF12416_consen  239 SLSSPSFP  246 (340)
T ss_pred             ccCCCCcC
Confidence            77788553

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.02  E-value=0.0004  Score=71.53  Aligned_cols=104  Identities=20%  Similarity=0.303  Sum_probs=85.8

Q ss_pred             CCcEEEEEEEEeecCCCCCC-CCCCCcEEEEEE--CC---EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEec-
Q 005736          486 TGRKINVTVVEGKDLMPKDK-SGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEE-  557 (680)
Q Consensus       486 ~~~~L~V~I~~a~~L~~~~~-~~~~dpyv~v~l--~~---~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~-  557 (680)
                      ..|.+.|.|++|++|..+.. ...++|||+|++  ++   .+.+|+.. +|.+|.|.+...|.-..+...|.+.||-.- 
T Consensus       267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg  346 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG  346 (405)
T ss_pred             ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence            45689999999999965543 237999999999  22   46788888 999999988888888888999999999654 


Q ss_pred             CC-CCceeEEEEEEcccccCCC-eeeEEEeCCCC
Q 005736          558 IF-GDENMGSARVNLEGLVEGS-VRDIWVPLEKV  589 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~~~-~~~~w~~L~~~  589 (680)
                      .. ++.|+|.+.+-+.++..+. ....||+|-+.
T Consensus       347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS  380 (405)
T ss_pred             ccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence            34 7889999999999988655 77899999763

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=96.64  E-value=0.0014  Score=68.08  Aligned_cols=113  Identities=18%  Similarity=0.309  Sum_probs=90.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE---C--CEEEeeecc-CCCCCeeeeEEEEEeeCC------------ceEEE
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---G--KIVQRTRTA-HSPNHVWNQKFELDEIGG------------GECLM  550 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~--~~~~~T~~~-~t~nP~wne~f~f~v~~~------------~~~L~  550 (680)
                      .|.+.|.++.+++........|.|+++.+   +  .+..+|.++ .|.+|.|+|.|.+.+...            ...+.
T Consensus       368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k  447 (523)
T KOG3837|consen  368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK  447 (523)
T ss_pred             HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence            67888888888865544445678888887   2  367788888 999999999999998751            23689


Q ss_pred             EEEEEecCC--CCceeEEEEEEcccccCCCeeeEEEeCCCC---CCeEEEEEEEEE
Q 005736          551 VKCYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEKV---NTGELRLQIEAT  601 (680)
Q Consensus       551 i~V~d~~~~--~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~---~~G~i~l~l~~~  601 (680)
                      |++|+...+  .|.++|.+++.|.-|...-.....++|.+.   ..|.|.+.+...
T Consensus       448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             EEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence            999999988  899999999999998877667778888763   358888888766

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=96.39  E-value=0.59  Score=49.37  Aligned_cols=231  Identities=10%  Similarity=0.091  Sum_probs=137.5

Q ss_pred             EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEec--
Q 005736          297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLHE--  373 (680)
Q Consensus       297 L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~~--  373 (680)
                      +.|+|++|++.+....                         -.-.+..++++....|.. ..+..|.||....-.++.  
T Consensus         2 ivl~i~egr~F~~~~~-------------------------~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~   56 (340)
T PF12416_consen    2 IVLSILEGRNFPQRPR-------------------------HPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKA   56 (340)
T ss_pred             EEEEEecccCCCCCCC-------------------------ccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHH
Confidence            5789999999987631                         145788889988888886 678899999988777653  


Q ss_pred             ----C--CCeEEEEEEEeCCCCCCCceeEEEEEecccc---cCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC--
Q 005736          374 ----E--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV---ADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV--  442 (680)
Q Consensus       374 ----~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~--  442 (680)
                          .  ...+.+++|..|....+-+.+|.+.+||...   .....                    .....|++|-+.  
T Consensus        57 l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~--------------------~~~~~W~~LL~~~~  116 (340)
T PF12416_consen   57 LKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQ--------------------KQKPKWYKLLSSSS  116 (340)
T ss_pred             HHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccccccccc--------------------ccCCCeeEcccccc
Confidence                1  3469999999984446889999999999987   22100                    122346665443  


Q ss_pred             ----ceeeEEEEEEEeeeecC-CCCCC----CCCCc-CC---------CCCccc------------ccccccCCCCcEEE
Q 005736          443 ----NSGELTVRLVLKEWQFS-DGSHS----LNNFH-SG---------SQQSLS------------GSSNFISRTGRKIN  491 (680)
Q Consensus       443 ----~~G~l~~~l~l~~~~~~-~~~~~----~~~~~-~~---------~~~~~~------------~~~~~~~~~~~~L~  491 (680)
                          .+-++.+.+.+...... .....    ..... .+         ....+.            +.++. ......|.
T Consensus       117 ~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~-~~d~FvLs  195 (340)
T PF12416_consen  117 KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDL-CCDLFVLS  195 (340)
T ss_pred             ccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCcccccccCccceeEEEccCCceEeeCCchh-cCceEEEE
Confidence                13567777665432211 00000    00000 00         000000            00011 12346788


Q ss_pred             EEEEEeecCCCCC----CC--CCCCcEEEEEECCEEEeeecc-CCCCCeee--eEEEEEeeC----------CceEEEEE
Q 005736          492 VTVVEGKDLMPKD----KS--GKCDPYVKLQYGKIVQRTRTA-HSPNHVWN--QKFELDEIG----------GGECLMVK  552 (680)
Q Consensus       492 V~I~~a~~L~~~~----~~--~~~dpyv~v~l~~~~~~T~~~-~t~nP~wn--e~f~f~v~~----------~~~~L~i~  552 (680)
                      |++..|+||...-    ..  +...-|....+-+....|... ...+|.|.  +.--+.+..          ....|.|.
T Consensus       196 vti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~  275 (340)
T PF12416_consen  196 VTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIH  275 (340)
T ss_pred             EehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEE
Confidence            9999999986441    11  223445555554445555555 66677653  333244442          13467777


Q ss_pred             EEEecCCCCceeEEEEEEcccccCC
Q 005736          553 CYNEEIFGDENMGSARVNLEGLVEG  577 (680)
Q Consensus       553 V~d~~~~~d~~iG~~~i~L~~l~~~  577 (680)
                      ++..    +..||.+.+++..+...
T Consensus       276 Lc~g----~~~Lg~~~v~l~~Ll~~  296 (340)
T PF12416_consen  276 LCCG----NQSLGSTSVPLQPLLPK  296 (340)
T ss_pred             EeeC----CcEEEEEEEEhhhccCC
Confidence            7764    67899999999998643

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=96.26  E-value=0.005  Score=50.44  Aligned_cols=86  Identities=15%  Similarity=0.276  Sum_probs=60.3

Q ss_pred             EEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEE--EEc-ceeeeecc-CCCCCCccceeEEEEEec
Q 005736          298 YVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEI--ELE-ELTRRTDA-RPGSDPRWDSMFNMVLHE  373 (680)
Q Consensus       298 ~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v--~~~-~~~~~T~v-~~t~nP~Wne~f~~~v~~  373 (680)
                      -|+|+.+++|.-....|..                     +.-|++-  .+. ....+|++ +...||+++|+|.|.+.-
T Consensus         2 witv~~c~d~s~~~~~~e~---------------------~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l   60 (103)
T cd08684           2 WITVLKCKDLSWPSSCGEN---------------------PTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKL   60 (103)
T ss_pred             EEEEEEecccccccccCcC---------------------CeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHH
Confidence            4788899988654332321                     1235533  333 45788888 688999999999998764


Q ss_pred             C---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          374 E---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       374 ~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      .   +-.|.|.|+..-   .+.+.||.|.+.+.++-.
T Consensus        61 ~qL~~V~L~fsv~~~~---~RKe~iG~~sL~l~s~ge   94 (103)
T cd08684          61 QNLQTVRLVFKIQTQT---PRKRTIGECSLSLRTLST   94 (103)
T ss_pred             hhccceEEEEEeeccC---CccceeeEEEeecccCCH
Confidence            3   336888888732   478999999999998743

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.31  E-value=0.025  Score=64.29  Aligned_cols=92  Identities=26%  Similarity=0.368  Sum_probs=71.9

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CEEEeeecc--CCCCCeeee-EEEEE--eeCCceEEEEEEE
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-------KIVQRTRTA--HSPNHVWNQ-KFELD--EIGGGECLMVKCY  554 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-------~~~~~T~~~--~t~nP~wne-~f~f~--v~~~~~~L~i~V~  554 (680)
                      .+.+.|+|+++.-|..++    ...||+|.+-       ...++|++.  ++.||+|+| .|.|.  +.+.-..|+|.||
T Consensus       702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy  777 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY  777 (1189)
T ss_pred             EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence            468999999999997655    4589999992       257889988  999999996 47787  3334678999999


Q ss_pred             EecCCCCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          555 NEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       555 d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                      +..   ..+||+-.+|+..+..+..+   +.|..
T Consensus       778 eEg---gK~ig~RIlpvd~l~~GYrh---v~LRs  805 (1189)
T KOG1265|consen  778 EEG---GKFIGQRILPVDGLNAGYRH---VCLRS  805 (1189)
T ss_pred             ccC---CceeeeeccchhcccCccee---EEecC
Confidence            985   68999999999988765432   44544

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.29  E-value=0.73  Score=42.34  Aligned_cols=115  Identities=17%  Similarity=0.255  Sum_probs=80.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE---EEeeecc--CCCCCeeeeEEEEEeeC---------CceEEEEEE
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI---VQRTRTA--HSPNHVWNQKFELDEIG---------GGECLMVKC  553 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~T~~~--~t~nP~wne~f~f~v~~---------~~~~L~i~V  553 (680)
                      ..+.++|++..+++.    ....-||+...++.   ..+|...  ..-.-.|||.|.+.+.-         ....+.|.|
T Consensus         7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v   82 (143)
T PF10358_consen    7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV   82 (143)
T ss_pred             EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence            468899999999875    22334555555544   3566655  66678899999998642         134788999


Q ss_pred             EEecCC-CCceeEEEEEEcccccCC--CeeeEEEeCCCC--CCeEEEEEEEEEEecCC
Q 005736          554 YNEEIF-GDENMGSARVNLEGLVEG--SVRDIWVPLEKV--NTGELRLQIEATRVDDN  606 (680)
Q Consensus       554 ~d~~~~-~d~~iG~~~i~L~~l~~~--~~~~~w~~L~~~--~~G~i~l~l~~~~~~~~  606 (680)
                      +..... +...+|.+.++|+++...  .....-++|...  ....+.+++.+..+...
T Consensus        83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~  140 (143)
T PF10358_consen   83 FEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRED  140 (143)
T ss_pred             EEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccC
Confidence            887533 336999999999998863  456677888765  34678888887765543

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=95.28  E-value=0.19  Score=46.55  Aligned_cols=93  Identities=12%  Similarity=0.166  Sum_probs=65.3

Q ss_pred             CCcEEEEEEEEeecCCCC-C-CCCCCCcEEEEEE--CCEEEeeecc-CCCCCeeeeEEEEEeeCC--------------c
Q 005736          486 TGRKINVTVVEGKDLMPK-D-KSGKCDPYVKLQY--GKIVQRTRTA-HSPNHVWNQKFELDEIGG--------------G  546 (680)
Q Consensus       486 ~~~~L~V~I~~a~~L~~~-~-~~~~~dpyv~v~l--~~~~~~T~~~-~t~nP~wne~f~f~v~~~--------------~  546 (680)
                      ....|.++|..++-.... + ..+..+.-..+++  ++|.++|+.+ .+.+|.|+|.|.|.+...              .
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~   86 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS   86 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence            345799999998765321 1 1134455555544  8999999999 999999999999997642              2


Q ss_pred             eEEEEEEEEecCC-CCceeEEEEEEcccccCCC
Q 005736          547 ECLMVKCYNEEIF-GDENMGSARVNLEGLVEGS  578 (680)
Q Consensus       547 ~~L~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~  578 (680)
                      +.+.+.|...+.. ...++|+..++...+....
T Consensus        87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~  119 (156)
T PF15627_consen   87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSG  119 (156)
T ss_pred             CceEEEEEEecCCCceEeeeeceehHHHHhccC
Confidence            3677777777655 4478888777777665443

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.12  E-value=0.14  Score=48.88  Aligned_cols=97  Identities=19%  Similarity=0.196  Sum_probs=68.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCE----EEeeecc-CCCCCeeeeEEEEEee--C--CceEEEEEEEEec
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEI--G--GGECLMVKCYNEE  557 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~----~~~T~~~-~t~nP~wne~f~f~v~--~--~~~~L~i~V~d~~  557 (680)
                      .++|+|+.+.++...  ....+-||++.+  |++    ...|+.+ ....+.|||.+.|++.  +  ....|.|.||+..
T Consensus         9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            699999999999762  244666777655  654    3466666 5678999999999865  2  3789999999975


Q ss_pred             CC-----------------CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEE
Q 005736          558 IF-----------------GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQI  598 (680)
Q Consensus       558 ~~-----------------~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l  598 (680)
                      ..                 .+..||.+.++|-+...        .|.   +|...+.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~--------~Lr---~G~~~L~l  133 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG--------QLK---TGDHTLYM  133 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEcccc--------hhh---cCCeEEEe
Confidence            32                 13588999888876321        122   57777766

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.02  E-value=0.17  Score=47.40  Aligned_cols=97  Identities=15%  Similarity=0.194  Sum_probs=68.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEE----EeeeccCCCCCeeeeEEEEEee--C--CceEEEEEEEEecC
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIV----QRTRTAHSPNHVWNQKFELDEI--G--GGECLMVKCYNEEI  558 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~~----~~T~~~~t~nP~wne~f~f~v~--~--~~~~L~i~V~d~~~  558 (680)
                      .++|+|+++.++...+   ..+-||++.+  |++.    ..|+.+...++.|||...|++.  +  ....|.|+||+...
T Consensus         9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~   85 (158)
T cd08398           9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKG   85 (158)
T ss_pred             CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCCCCCccceeEEcccchhcCChhheEEEEEEEEec
Confidence            5899999999987543   4578888866  5543    3455553368999999999865  2  37899999999764


Q ss_pred             C-----CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEEE
Q 005736          559 F-----GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE  599 (680)
Q Consensus       559 ~-----~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l~  599 (680)
                      .     ....+|.++++|-+...        .|.   +|...+.+.
T Consensus        86 ~~~~k~~~~~iG~~ni~LFd~~~--------~Lr---~G~~~L~lW  120 (158)
T cd08398          86 RKGAKEEHCPLAWGNINLFDYTD--------TLV---SGKMALNLW  120 (158)
T ss_pred             ccCCCCceEEEEEEEEEEECCCC--------hhh---CCCEEEEEE
Confidence            2     12469999999887321        122   577777774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=94.01  E-value=0.053  Score=56.82  Aligned_cols=70  Identities=16%  Similarity=0.271  Sum_probs=56.6

Q ss_pred             CCCeEEEEEEc-----ceeeeecc-CCCCCCccceeEEEEEec---C---------CCeEEEEEEEeCCCCCCCceeEEE
Q 005736          337 DLTTFVEIELE-----ELTRRTDA-RPGSDPRWDSMFNMVLHE---E---------TGTVRFNLYECIPGHVKYDYLTSC  398 (680)
Q Consensus       337 ~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wne~f~~~v~~---~---------~~~l~l~v~d~d~~~~~d~~lG~~  398 (680)
                      ..|-|+.+++-     .+..+|.+ ++|..|.|+|.|.+.+..   .         ...+.|++|+...+..+|.++|.|
T Consensus       387 hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~  466 (523)
T KOG3837|consen  387 HLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTG  466 (523)
T ss_pred             hHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceecee
Confidence            46888888764     34556666 799999999999998875   1         235899999988777799999999


Q ss_pred             EEeccccc
Q 005736          399 EVKMKYVA  406 (680)
Q Consensus       399 ~i~l~~l~  406 (680)
                      .+.|.-|.
T Consensus       467 nikle~Le  474 (523)
T KOG3837|consen  467 NIKLEILE  474 (523)
T ss_pred             eeeehhhh
Confidence            99998885

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=93.92  E-value=0.14  Score=56.79  Aligned_cols=195  Identities=14%  Similarity=0.200  Sum_probs=118.3

Q ss_pred             hhhHHHHHHhhcccCc-----hHHHHHHHHHHHHHHHhhc-CCCccceEEEeEEeeCCCCCeeeeEEEEECC--------
Q 005736          102 CEWLNKLLMEVWPGYI-----NPKLSIRFSQIVEKRLKHR-KPRLIEKIELQEFSLGSTSPCLGLHGTRWSS--------  167 (680)
Q Consensus       102 ~eWlN~~l~~~W~~~~-----~~~~~~~i~~~v~~~l~~~-~P~~i~~i~~~~~~lG~~pp~i~~v~~~~~~--------  167 (680)
                      +-.+|.++.......-     ..++-+......+.++... .-..++.+.+.++.||.+-|.+++.+++.-.        
T Consensus       101 c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l~~  180 (1051)
T KOG3532|consen  101 CNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKFMTINSLRVHSVENLSEFLKY  180 (1051)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhccccccccceEEeecccHHHHHHh
Confidence            3345666666665311     1122222223333333332 2357999999999999999999999988510        


Q ss_pred             -----------C-----CCeEEEEEEEEEecCCeEEEEEEEecCCcce-eeEEEEEeEEEEEEEEE----eeeeCCcEEE
Q 005736          168 -----------S-----GDQRVMQLGFDWDANDISILLLAKLAKPLLG-TAKIVINSLHIKGDLLV----MPILEGKAVL  226 (680)
Q Consensus       168 -----------~-----~~~~~ld~~~~~~~~~~~i~l~~~~~~~~~g-~~~v~v~~~~~~g~~Rv----~P~~~~~~v~  226 (680)
                                 +     -..+.+=.++.|.|++ .-++.+..-   .+ ...++|+-.+++|.+|+    .|+-++   +
T Consensus       181 ~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~f-Ttsid~~s~---~~kk~S~~iKl~~l~Gm~r~~~~r~py~hw---~  253 (1051)
T KOG3532|consen  181 AQTSKHRFILSPVNVYCIQKIVFILDIDYSGGF-TTSIDVSTI---IAKKASLSVKITKLTGMVRVILSRQPYHHW---T  253 (1051)
T ss_pred             hhhhhhhcccCCcceecccccccccccccCCCc-ceecCCccc---cccCCceeEEEEEeccceeEEEEeccceee---e
Confidence                       0     1234555677888864 222222211   22 34677888899999999    566532   5


Q ss_pred             EEecCCCeEEEEEE--EcCCCCCccCcccCccHHHHHHHHHHHHHhhccccCcceEEecccc-------c------cccc
Q 005736          227 YSFVSIPDVRIGVA--FGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAV-------D------LRKK  291 (680)
Q Consensus       227 ~sf~~~P~id~~~~--~~~~~~~~~~i~~iP~l~~~i~~~i~~~~~~~~v~P~~~~~~l~~~-------~------~~~~  291 (680)
                      ++|++.|.+..+.+  +-+.      -| --.|.+.|...|+.++.....|||+. +.+-+.       .      +..-
T Consensus       254 ~sf~G~P~~e~di~s~~qg~------qL-Q~~I~q~i~~~ir~~~~rKhT~pnyK-~ry~pff~~~~~~a~~~~~s~~~i  325 (1051)
T KOG3532|consen  254 FSFVGQPIFETDINSQIQGH------QL-QRLIPQIIKEAIRRSLQRKHTWPNYK-IRYRPFFPNPIFQASPPINSFTHI  325 (1051)
T ss_pred             eeeccCchhhhhhHHHHHHH------HH-HHHhHHHHHHHHHHHHHhhccCcchh-hhccccccCcccccCcchhhhhhe
Confidence            88999999876554  2111      00 12366778888888889999999975 222110       0      0111


Q ss_pred             CcCeEEEEEEEecCCCCCCC
Q 005736          292 AVGGIVYVRVISASKLSRSS  311 (680)
Q Consensus       292 ~~~G~L~V~v~~a~~L~~~d  311 (680)
                      -+.|.+.|++.++..|....
T Consensus       326 ~~~G~~~V~~lE~srL~~~~  345 (1051)
T KOG3532|consen  326 KMEGGIEVTVLECSRLKDKN  345 (1051)
T ss_pred             eccCceeEeehhhhhhhccC
Confidence            23599999999998887543

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.61  E-value=0.5  Score=44.37  Aligned_cols=85  Identities=11%  Similarity=0.196  Sum_probs=57.6

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE--cce----eeeeccCCCCCCccceeEE
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL----TRRTDARPGSDPRWDSMFN  368 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~--~~~----~~~T~v~~t~nP~Wne~f~  368 (680)
                      .-++|+|++|.++.-.+.                         .|-||.+.+  |+.    ...|+.....++.|||...
T Consensus         8 ~~~~v~i~~~~~~~~~~~-------------------------~~l~V~v~l~~g~~~L~~pv~T~~v~~~~~~WnEwL~   62 (158)
T cd08398           8 SNLRIKILCATYVNVNDI-------------------------DKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLD   62 (158)
T ss_pred             CCeEEEEEeeccCCCCCc-------------------------CeEEEEEEEEECCEEccCeeEecccCCCCCccceeEE
Confidence            568999999998875431                         267887755  433    2344433347899999998


Q ss_pred             EEEe--cC--CCeEEEEEEEeCCCCC---CCceeEEEEEeccc
Q 005736          369 MVLH--EE--TGTVRFNLYECIPGHV---KYDYLTSCEVKMKY  404 (680)
Q Consensus       369 ~~v~--~~--~~~l~l~v~d~d~~~~---~d~~lG~~~i~l~~  404 (680)
                      |.+.  +.  +..|.|.+|+......   ....+|.+.++|=+
T Consensus        63 fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          63 YDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             cccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence            8765  43  5579999999764211   22569999888755

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.55  E-value=0.071  Score=55.47  Aligned_cols=110  Identities=15%  Similarity=0.139  Sum_probs=74.6

Q ss_pred             hccccCcceEEecccccccccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc--
Q 005736          271 KTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE--  348 (680)
Q Consensus       271 ~~~v~P~~~~~~l~~~~~~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~--  348 (680)
                      ..+..|+.-.+.+..     -...|.|.|.|++|++|..+.-.+.                     .++|||+|.+-+  
T Consensus       250 q~la~P~mg~iq~~~-----~d~~g~l~vEii~ar~l~~k~~~k~---------------------~~apyVkVYlL~~g  303 (405)
T KOG2060|consen  250 QTLAAPNMGDIQIAL-----MDSKGDLEVEIIRARGLVVKPGSKS---------------------LPAPYVKVYLLENG  303 (405)
T ss_pred             hhhcCcccccchhhh-----hcccCceeEEEEecccccccCCccc---------------------ccCceeEEEEcCCC
Confidence            345567654333311     2345999999999999987653332                     259999998742  


Q ss_pred             ---eeeeecc-CCCCCCccceeEEEEEecCCCeEEEEEEE-eCCCCCCCceeEEEEEecccccC
Q 005736          349 ---LTRRTDA-RPGSDPRWDSMFNMVLHEETGTVRFNLYE-CIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       349 ---~~~~T~v-~~t~nP~Wne~f~~~v~~~~~~l~l~v~d-~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                         .+.+|+. ++|.+|-+.....|.-......|.+.||. +.+. -.+.|+|.+.+-+.+|..
T Consensus       304 ~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRm-d~k~fmg~aqi~l~eL~l  366 (405)
T KOG2060|consen  304 FCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRM-DHKSFMGVAQIMLDELNL  366 (405)
T ss_pred             ceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccccc-chHHHhhHHHHHhhhhcc
Confidence               2557776 78888888776555433445568888875 3332 377999999999988853

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.05  E-value=0.61  Score=43.73  Aligned_cols=85  Identities=20%  Similarity=0.258  Sum_probs=60.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCE----EEeeecc-CCCCCeeeeEEEEEee--C--CceEEEEEEEEec
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEI--G--GGECLMVKCYNEE  557 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~----~~~T~~~-~t~nP~wne~f~f~v~--~--~~~~L~i~V~d~~  557 (680)
                      .++|+++...+....+ ....+-||++.+  |++    ...|... ...++.|||...|.+.  +  .+..|.|+||+.+
T Consensus         9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            5788888888876511 234566777766  553    2344444 4478999999999854  2  3789999999987


Q ss_pred             CC---CCceeEEEEEEcccc
Q 005736          558 IF---GDENMGSARVNLEGL  574 (680)
Q Consensus       558 ~~---~d~~iG~~~i~L~~l  574 (680)
                      ..   .+..||.++++|-+.
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcc
Confidence            54   257999999998874

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.95  E-value=0.4  Score=45.09  Aligned_cols=82  Identities=17%  Similarity=0.192  Sum_probs=58.8

Q ss_pred             CCCCcEEEEEE--CCE----EEeeecc-CCCCCeeeeEEEEEee--C--CceEEEEEEEEecCC-CCceeEEEEEEcccc
Q 005736          507 GKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEI--G--GGECLMVKCYNEEIF-GDENMGSARVNLEGL  574 (680)
Q Consensus       507 ~~~dpyv~v~l--~~~----~~~T~~~-~t~nP~wne~f~f~v~--~--~~~~L~i~V~d~~~~-~d~~iG~~~i~L~~l  574 (680)
                      ..++-||++.+  +++    ..+|+.+ -+..+.|||...|++.  +  ....|.|+||+.+.. +...+|.++++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            44677887766  543    3366666 6677899999999865  2  378999999998765 567999999998874


Q ss_pred             cCCCeeeEEEeCCCCCCeEEEEEEE
Q 005736          575 VEGSVRDIWVPLEKVNTGELRLQIE  599 (680)
Q Consensus       575 ~~~~~~~~w~~L~~~~~G~i~l~l~  599 (680)
                      . +       .|   .+|...+.+.
T Consensus       108 ~-g-------~L---r~G~~~l~lw  121 (159)
T cd08397         108 D-G-------TL---RRGRQKLRVW  121 (159)
T ss_pred             C-C-------cE---ecCCEEEEEE
Confidence            2 1       12   2577777773

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.24  E-value=0.87  Score=43.54  Aligned_cols=98  Identities=20%  Similarity=0.234  Sum_probs=62.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEE---Eeeecc-CCCCCeeeeEEEEEee--C--CceEEEEEEEEecC
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIV---QRTRTA-HSPNHVWNQKFELDEI--G--GGECLMVKCYNEEI  558 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~~---~~T~~~-~t~nP~wne~f~f~v~--~--~~~~L~i~V~d~~~  558 (680)
                      .++|+|+.+.++.. +......-||++.+  |++.   .+|... -+.++.|||...|.+.  +  ....|.|.||+...
T Consensus        11 ~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          11 KFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            58888888874432 22233345666654  5543   266666 6678999999999865  2  37799999999632


Q ss_pred             C-----------------CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEE
Q 005736          559 F-----------------GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQI  598 (680)
Q Consensus       559 ~-----------------~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l  598 (680)
                      .                 .+..||.+.+.|-+...        .|   .+|+..+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~--------~L---r~G~~~L~~  135 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF--------LL---RTGEYVLHM  135 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEcCCC--------ce---ecCCEEEEE
Confidence            1                 14567777777765321        12   257777776

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.36  E-value=1.3  Score=42.31  Aligned_cols=86  Identities=14%  Similarity=0.175  Sum_probs=56.2

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE--cce----eeeeccC-CCCCCccceeE
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL----TRRTDAR-PGSDPRWDSMF  367 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~--~~~----~~~T~v~-~t~nP~Wne~f  367 (680)
                      .-++|+|+.+.++.-.+.                        ..+-||++.+  |+.    ...|+.. -..++.|||.+
T Consensus         8 ~~f~i~i~~~~~~~~~~~------------------------~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl   63 (173)
T cd08693           8 EKFSITLHKISNLNAAER------------------------TMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETL   63 (173)
T ss_pred             CCEEEEEEEeccCccCCC------------------------CceEEEEEEEEECCEEccCceEccccCCCCccccceeE
Confidence            568999999999986221                        1256777644  433    3355543 35679999999


Q ss_pred             EEEEe--cC--CCeEEEEEEEeCCCC---------------CCCceeEEEEEeccc
Q 005736          368 NMVLH--EE--TGTVRFNLYECIPGH---------------VKYDYLTSCEVKMKY  404 (680)
Q Consensus       368 ~~~v~--~~--~~~l~l~v~d~d~~~---------------~~d~~lG~~~i~l~~  404 (680)
                      .|.+.  +.  ...|.|.||+.....               .++..||.+.++|=+
T Consensus        64 ~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          64 EFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             EcccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence            88754  43  457999999975421               124678887777654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=90.90  E-value=2.8  Score=35.05  Aligned_cols=83  Identities=17%  Similarity=0.215  Sum_probs=59.1

Q ss_pred             CCcEEEEEECC-EEEeeeccCCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          509 CDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       509 ~dpyv~v~l~~-~~~~T~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      .+..+.+.+++ .+.+|.-....+..|++.|.+.+. .+..|.|.||=+|.  ..+-|...+.|.+...    ..-.+|+
T Consensus         9 ~eV~avLklDn~~VgqT~Wk~~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~--RslCav~~lrLEd~~~----~~~~~le   81 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWKPKSNQAWDQSFTLELE-RSRELEIAVYWRDW--RSLCAVKFLKLEDERH----EVQLDME   81 (98)
T ss_pred             cceEEEEEEcCeEEeeccccccccccccceeEEEee-cccEEEEEEEEecc--hhhhhheeeEhhhhcc----cceeccc
Confidence            56778888865 777887774467889999999887 56678888887663  3466777777887322    3334555


Q ss_pred             CCCCeEEEEEEEE
Q 005736          588 KVNTGELRLQIEA  600 (680)
Q Consensus       588 ~~~~G~i~l~l~~  600 (680)
                      +  +|.+...++|
T Consensus        82 p--qg~l~~ev~f   92 (98)
T cd08687          82 P--QLCLVAELTF   92 (98)
T ss_pred             c--ccEEEEEEEe
Confidence            4  6877777765

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=90.57  E-value=0.54  Score=47.73  Aligned_cols=111  Identities=19%  Similarity=0.205  Sum_probs=71.6

Q ss_pred             CCcEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-C
Q 005736          486 TGRKINVTVVEGKDLMPKD--KSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G  560 (680)
Q Consensus       486 ~~~~L~V~I~~a~~L~~~~--~~~~~dpyv~v~l~~-~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~  560 (680)
                      ..|+|.++++.+++|....  .+-..+-||.+..+. ...||.+. ....-.|.|+|+..+.+ ...+.+-||.++.. +
T Consensus        49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~R  127 (442)
T KOG1452|consen   49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRR  127 (442)
T ss_pred             ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhh
Confidence            3469999999999995433  244568899998865 45677777 77777899999998763 44577778887765 3


Q ss_pred             Cce--eEEEEEEcccccC-CCeeeEEEeCCCCCCeEEEEEEEEE
Q 005736          561 DEN--MGSARVNLEGLVE-GSVRDIWVPLEKVNTGELRLQIEAT  601 (680)
Q Consensus       561 d~~--iG~~~i~L~~l~~-~~~~~~w~~L~~~~~G~i~l~l~~~  601 (680)
                      +++  .|  -+.+..+.. ++.+..-..|+.  +|++.+++.+.
T Consensus       128 HKLC~~g--~l~~~~v~rqspd~~~Al~leP--rgq~~~r~~~~  167 (442)
T KOG1452|consen  128 HKLCHLG--LLEAFVVDRQSPDRVVALYLEP--RGQPPLRLPLA  167 (442)
T ss_pred             ccccccc--hhhhhhhhhcCCcceeeeeccc--CCCCceecccC
Confidence            333  44  233333322 223333344444  67777777554

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.96  E-value=1.5  Score=41.90  Aligned_cols=99  Identities=22%  Similarity=0.268  Sum_probs=69.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----eeecc-----CCCCCeeeeEEEEEee--C--CceEEEEEE
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIVQ----RTRTA-----HSPNHVWNQKFELDEI--G--GGECLMVKC  553 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----~T~~~-----~t~nP~wne~f~f~v~--~--~~~~L~i~V  553 (680)
                      .+.|+|..+.+++........+-|+.+.+  |++..    .|+..     -...+.|||...|.+.  +  .+..|.|++
T Consensus         9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl   88 (171)
T cd04012           9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL   88 (171)
T ss_pred             cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence            68999999999987664456778888866  55432    44422     1235679999999865  2  378999999


Q ss_pred             EEecCC----------CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEE
Q 005736          554 YNEEIF----------GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQI  598 (680)
Q Consensus       554 ~d~~~~----------~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l  598 (680)
                      |+....          .+..||.++++|-+...        .|   .+|...+.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~--------~L---~~G~~~L~l  132 (171)
T cd04012          89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG--------VL---RQGSLLLGL  132 (171)
T ss_pred             EEEecCCccccccccccceEEEEEeEeeEcchh--------hh---ccCCEEEEe
Confidence            997643          24689999999876321        12   257777777

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=89.84  E-value=4.2  Score=37.37  Aligned_cols=68  Identities=18%  Similarity=0.205  Sum_probs=47.5

Q ss_pred             Eeeecc-CC-CCCeeeeEEEEEee--C--CceEEEEEEEEecCC-CC----ceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736          522 QRTRTA-HS-PNHVWNQKFELDEI--G--GGECLMVKCYNEEIF-GD----ENMGSARVNLEGLVEGSVRDIWVPLEKVN  590 (680)
Q Consensus       522 ~~T~~~-~t-~nP~wne~f~f~v~--~--~~~~L~i~V~d~~~~-~d----~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  590 (680)
                      ..|+.. .+ .++.|||...|.+.  +  .+..|.|+||+.+.. ..    ..||.+.++|-+.. +.       |.   
T Consensus        22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~-~~-------L~---   90 (142)
T PF00792_consen   22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR-GQ-------LR---   90 (142)
T ss_dssp             EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT-SB-------BE---
T ss_pred             eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC-Cc-------cc---
Confidence            366666 54 79999999999965  2  488999999998876 33    69999999988752 11       11   


Q ss_pred             CeEEEEEEEEE
Q 005736          591 TGELRLQIEAT  601 (680)
Q Consensus       591 ~G~i~l~l~~~  601 (680)
                      +|...+.+ |.
T Consensus        91 ~G~~~L~l-W~  100 (142)
T PF00792_consen   91 QGPQKLSL-WP  100 (142)
T ss_dssp             EEEEEEE--EE
T ss_pred             CCCEEEEE-Ec
Confidence            47777777 54

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=89.51  E-value=3.8  Score=38.88  Aligned_cols=68  Identities=22%  Similarity=0.291  Sum_probs=52.7

Q ss_pred             CCCcEEEEEECC-EEEeeecc-C--CCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeEEEEEEccccc
Q 005736          508 KCDPYVKLQYGK-IVQRTRTA-H--SPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLV  575 (680)
Q Consensus       508 ~~dpyv~v~l~~-~~~~T~~~-~--t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~~~i~L~~l~  575 (680)
                      ...-|+++.+++ ++.+|+.. -  ...-.|||.|.+.+...-..|.++||......+..|+.+.+|+-...
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST  107 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence            456788999955 66677766 3  22345789999999877788999999988778899999999987643

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=89.42  E-value=0.74  Score=52.99  Aligned_cols=82  Identities=21%  Similarity=0.287  Sum_probs=59.6

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-------ceeeeecc--CCCCCCccce
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-------ELTRRTDA--RPGSDPRWDS  365 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-------~~~~~T~v--~~t~nP~Wne  365 (680)
                      +.+.|+|+++.-|..++.                          ..||+|.+-       +..++|++  .|+.||+|+|
T Consensus       703 ~t~sV~VISgqFLSdrkv--------------------------gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~e  756 (1189)
T KOG1265|consen  703 ATLSVTVISGQFLSDRKV--------------------------GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEE  756 (1189)
T ss_pred             eeEEEEEEeeeecccccc--------------------------CceEEEEecCCCchhhhhhhhhccccCCCCCccccc
Confidence            577899999888876553                          359999874       23567776  4899999997


Q ss_pred             e-EEEE--EecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          366 M-FNMV--LHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       366 ~-f~~~--v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      . |.|.  |-..-..|+|.||+.     ...++|+-.+|+..|..
T Consensus       757 epfvF~KVvLpeLA~lRiavyeE-----ggK~ig~RIlpvd~l~~  796 (1189)
T KOG1265|consen  757 EPFVFRKVVLPELASLRIAVYEE-----GGKFIGQRILPVDGLNA  796 (1189)
T ss_pred             CCcccceecccchhheeeeeecc-----CCceeeeeccchhcccC
Confidence            4 5554  222235699999884     34799999999988853

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.34  E-value=1.5  Score=41.19  Aligned_cols=66  Identities=8%  Similarity=0.139  Sum_probs=47.2

Q ss_pred             CCeEEEEEE--cce----eeeecc-CCCCCCccceeEEEEEe--cC--CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736          338 LTTFVEIEL--EEL----TRRTDA-RPGSDPRWDSMFNMVLH--EE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKY  404 (680)
Q Consensus       338 ~dpyv~v~~--~~~----~~~T~v-~~t~nP~Wne~f~~~v~--~~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~  404 (680)
                      .|-||++.+  ++.    ..+|+. .-+..+.|||...|.+.  +.  +..|.|.|||.+.. .+...+|.+.++|=+
T Consensus        30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~-~~~~~vg~~~~~lFd  106 (159)
T cd08397          30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT-GKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC-CCceEEEEEEEeeEC
Confidence            377888866  333    234444 23566889999998865  43  55799999998764 367899999988755

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.06  E-value=2.4  Score=39.70  Aligned_cols=88  Identities=13%  Similarity=0.183  Sum_probs=56.2

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE--cce----eeeeccCC-CCCCccceeE
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL----TRRTDARP-GSDPRWDSMF  367 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~--~~~----~~~T~v~~-t~nP~Wne~f  367 (680)
                      .-++|++....++...+.                       ...+-|+++.+  |+.    ...|.... ..++.|||..
T Consensus         8 ~~~~i~i~~~~~~~~~~~-----------------------~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l   64 (156)
T cd08380           8 FNLRIKIHGITNINLLDS-----------------------EDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWL   64 (156)
T ss_pred             CCeEEEEEeeccccccCC-----------------------CceeEEEEEEEEECCEEccCceeccCCcCCCCCccccee
Confidence            457788888777665110                       01255666654  333    22333322 3789999999


Q ss_pred             EEEEe--cC--CCeEEEEEEEeCCCC-CCCceeEEEEEecccc
Q 005736          368 NMVLH--EE--TGTVRFNLYECIPGH-VKYDYLTSCEVKMKYV  405 (680)
Q Consensus       368 ~~~v~--~~--~~~l~l~v~d~d~~~-~~d~~lG~~~i~l~~l  405 (680)
                      .|.+.  +.  +..|.|.+|+.+... .++..||.+.++|=+-
T Consensus        65 ~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          65 TFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             EccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence            88754  43  457999999987642 1568999999987653

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=87.34  E-value=1.3  Score=41.08  Aligned_cols=62  Identities=8%  Similarity=0.072  Sum_probs=45.8

Q ss_pred             CCCceEEEEEEEeecCccccC--CCCCCCEEEEEE--CCeEEeeeeeecCCCCcccceeEEEecCC
Q 005736          616 SGNGWIELVIVEARDLVAADL--RGTSDPYVKVQY--GDLKKRTKLTVACLSGHIQNSKSSMASNL  677 (680)
Q Consensus       616 ~~~~~L~V~I~~a~~L~~~d~--~g~~DPyV~v~l--g~~~~kT~~~k~tlnP~wnE~f~f~V~n~  677 (680)
                      +....|.+.|..++-.-..-.  .|..+.-+.+++  ++++++|+.+.-+.+|.|+|.|-|.+...
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~   71 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRD   71 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEeccc
Confidence            555678888888765532211  155555555544  89999999999999999999999998764

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=86.73  E-value=6.9  Score=37.88  Aligned_cols=53  Identities=11%  Similarity=0.034  Sum_probs=42.4

Q ss_pred             EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC--CC---ceeEEEEEEcc
Q 005736          520 IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF--GD---ENMGSARVNLE  572 (680)
Q Consensus       520 ~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~--~d---~~iG~~~i~L~  572 (680)
                      ..++|.+. ...+|.|+|++.+.++.   .+..|.|++++....  +|   ..+|.+.+||-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            57788888 99999999999999875   377899999886543  33   57888888875

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=86.71  E-value=7  Score=37.72  Aligned_cols=54  Identities=20%  Similarity=0.174  Sum_probs=42.0

Q ss_pred             EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC--C-CceeEEEEEEccc
Q 005736          520 IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF--G-DENMGSARVNLEG  573 (680)
Q Consensus       520 ~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~--~-d~~iG~~~i~L~~  573 (680)
                      ..++|.+. ++.+|.|+|++.+.++.   ....|.|++++....  + ...+|.+.+||-+
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            46788888 99999999999999885   367899988886543  2 2578888888743

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=85.42  E-value=2.2  Score=43.45  Aligned_cols=75  Identities=19%  Similarity=0.359  Sum_probs=54.6

Q ss_pred             CcCeEEEEEEEecCCCCCCCC-CCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeeccC-CCCCCccceeEE
Q 005736          292 AVGGIVYVRVISASKLSRSSL-RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDAR-PGSDPRWDSMFN  368 (680)
Q Consensus       292 ~~~G~L~V~v~~a~~L~~~d~-~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v~-~t~nP~Wne~f~  368 (680)
                      ...|+|.+++.++++|+-... .|.                     +.+-||++.++.+ ..+|.++ .+..=.|.|+|.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kgl---------------------t~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~  106 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGL---------------------TVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFK  106 (442)
T ss_pred             cccceEEEEEecccccccChhccCc---------------------eeeeeeeeeecccCccccccccCCCCccchhhce
Confidence            345999999999999986542 122                     2488999999976 4566663 455567999998


Q ss_pred             EEEecCCCeEEEEEEEeCCC
Q 005736          369 MVLHEETGTVRFNLYECIPG  388 (680)
Q Consensus       369 ~~v~~~~~~l~l~v~d~d~~  388 (680)
                      ..+... ..+.+-||.|+..
T Consensus       107 ~Dvv~~-~vl~~lvySW~pq  125 (442)
T KOG1452|consen  107 HDVVNI-EVLHYLVYSWPPQ  125 (442)
T ss_pred             eecccc-eeeeEEEeecCch
Confidence            876653 3567778888765

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=84.61  E-value=5.2  Score=34.33  Aligned_cols=69  Identities=17%  Similarity=0.185  Sum_probs=46.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCE----EEeeecc-CCCCCeeeeEEEEEee--C--CceEEEEEEEEecC
Q 005736          490 INVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEI--G--GGECLMVKCYNEEI  558 (680)
Q Consensus       490 L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~----~~~T~~~-~t~nP~wne~f~f~v~--~--~~~~L~i~V~d~~~  558 (680)
                      +.+.+....+..........+-||++.+  |++    ...|+.+ -...+.|||...|++.  +  ....|.|.+|+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            5566777766654432223477888876  554    3356666 5667999999999865  2  37899999999653

Outlier of C2 family.

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=83.16  E-value=4.7  Score=38.39  Aligned_cols=89  Identities=11%  Similarity=0.098  Sum_probs=58.0

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE--cce----eeeecc---CC--CCCCc
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL----TRRTDA---RP--GSDPR  362 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~--~~~----~~~T~v---~~--t~nP~  362 (680)
                      ...+.|+|..+.+++......                      ..|-|+.+.+  |++    ...|+.   .+  ...+.
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~----------------------~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~   64 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQS----------------------FEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVV   64 (171)
T ss_pred             cccEEEEEEEeecCChHHhhc----------------------cccEEEEEEEEECCEECcCceeccccccccCcccccc
Confidence            367889999999888764211                      1267777755  433    234442   11  23577


Q ss_pred             cceeEEEEEe--cC--CCeEEEEEEEeCCCCC--------CCceeEEEEEeccc
Q 005736          363 WDSMFNMVLH--EE--TGTVRFNLYECIPGHV--------KYDYLTSCEVKMKY  404 (680)
Q Consensus       363 Wne~f~~~v~--~~--~~~l~l~v~d~d~~~~--------~d~~lG~~~i~l~~  404 (680)
                      |||...|.+.  +.  +..|.|.+|+......        ++..||.+.++|=+
T Consensus        65 Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          65 WDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             ccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence            9999988864  33  4579999999765311        45788998888755

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=83.00  E-value=9.5  Score=36.81  Aligned_cols=54  Identities=15%  Similarity=0.303  Sum_probs=38.6

Q ss_pred             eeeecc-CCCCCCccceeEEEEEecC---CCeEEEEEEEeCCCCCC-CceeEEEEEecc
Q 005736          350 TRRTDA-RPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVK-YDYLTSCEVKMK  403 (680)
Q Consensus       350 ~~~T~v-~~t~nP~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~-d~~lG~~~i~l~  403 (680)
                      .++|.+ ..+.+|.|+|++.+.+...   ..+|.|+.++.-....+ ...+|-+.+||-
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            356777 7889999999999887753   45799988874432112 267888888874

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=81.80  E-value=3.6  Score=39.71  Aligned_cols=55  Identities=9%  Similarity=0.144  Sum_probs=33.6

Q ss_pred             eeeecc-CCCCCCccceeEEEEEecC---CCeEEEEEEEeCCCCCCC--ceeEEEEEeccc
Q 005736          350 TRRTDA-RPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY--DYLTSCEVKMKY  404 (680)
Q Consensus       350 ~~~T~v-~~t~nP~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d--~~lG~~~i~l~~  404 (680)
                      ...|.+ ..+.+|.|+|+|.+.+...   ...|.|++++......++  ..+|.+.+||-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            345666 6789999999999988753   457999999966542222  799999999877

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=80.94  E-value=39  Score=30.72  Aligned_cols=85  Identities=15%  Similarity=0.253  Sum_probs=55.6

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEccee---eeecc--CCCCCCccceeEEEE
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELT---RRTDA--RPGSDPRWDSMFNMV  370 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~---~~T~v--~~t~nP~Wne~f~~~  370 (680)
                      .+.|+|++..+++..+  +                        .-|+...-++..   .+|..  -.+-.-.|||.|.+.
T Consensus         8 ~~~l~i~~l~~~p~~~--~------------------------~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~   61 (143)
T PF10358_consen    8 QFDLTIHELENLPSSN--G------------------------KVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFP   61 (143)
T ss_pred             EEEEEEEEeECcCCCC--C------------------------EEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEE
Confidence            5678888888887621  1                        235555555442   44443  245557899999887


Q ss_pred             Eec----C----CC-eEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          371 LHE----E----TG-TVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       371 v~~----~----~~-~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      +.-    .    .. .+.|.|+..... ++...+|.+.++|++...
T Consensus        62 ~tl~~~~k~~~~~~K~~~~~v~~~~~~-~~k~~lG~~~inLaey~~  106 (143)
T PF10358_consen   62 CTLYRDKKSKEFQPKELKFSVFEVDGS-GKKKVLGKVSINLAEYAN  106 (143)
T ss_pred             EEEEEcCCCCcEeeEEEEEEEEEecCC-CccceEEEEEEEHHHhhC
Confidence            541    1    12 488999887533 233799999999999865

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=80.87  E-value=7.7  Score=37.38  Aligned_cols=54  Identities=15%  Similarity=0.148  Sum_probs=34.1

Q ss_pred             EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC--C--CceeEEEEEEccc
Q 005736          520 IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF--G--DENMGSARVNLEG  573 (680)
Q Consensus       520 ~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~--~--d~~iG~~~i~L~~  573 (680)
                      ..+.|.+. ++.+|.|+|+|.+.++.   +...|.|++++....  +  +..+|.+.+||-+
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            35677777 89999999999999885   367899999997654  2  2689999999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	680
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		3e-06
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		4e-04

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFELDEIGGGE 547
           KI++TVV  + L  KDK+G  DPYV +Q GK  +RT+T + + N VW + F  +     +
Sbjct: 18  KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSD 77
Query: 548 CLMVKCYNEE 557
            + V+  +E+
Sbjct: 78  RIKVRVLDED 87

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQKF 538
           T  +I+VTV E ++L+P D +G  DPYVKL+          Q+TRT  +  N VWN+ F
Sbjct: 18  TADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETF 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	680
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	5e-27
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	7e-12
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-25
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-05
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-25
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-24
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	5e-10
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	7e-24
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	1e-09
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-22
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	3e-09
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	9e-22
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	1e-07
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-21
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-20
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	6e-05
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-19
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-04
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-18
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	4e-08
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	2e-18
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	9e-08
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-17
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	1e-07
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	5e-16
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	3e-05
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	1e-13
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	3e-06
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-13
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	3e-05
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-12
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-05
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	1e-12
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	5e-05
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	2e-12
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	2e-06
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	4e-12
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	4e-05
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-11
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	3e-05
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-11
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	6e-04
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	6e-11
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	4e-05
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	2e-10
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	4e-10
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	4e-09
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	5e-09
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-08
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	1e-08
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	3e-08
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	4e-08
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	3e-04
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	4e-08
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	8e-05
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	8e-08
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	8e-08
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-07
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-04
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-07
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-07
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	8e-07
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-04
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	8e-07
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	9e-07
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  105 bits (264), Expect = 5e-27
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 477 SGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWN 535
           SGSS  +   G  + V V++  DL+  D SGK DP+  L+ G    +T T + + N  WN
Sbjct: 3   SGSSGDVKDVGI-LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWN 61

Query: 536 QKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW---VPLEKVNT 591
           + F        + L V  ++E+     + +G   + L  + +G           LE+   
Sbjct: 62  KVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFK 121

Query: 592 GELRLQIE 599
           G + L+++
Sbjct: 122 GVIYLEMD 129

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 62.3 bits (152), Expect = 7e-12
 Identities = 13/38 (34%), Positives = 26/38 (68%)

Query: 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
           G +++ +++A DL+AAD  G SDP+  ++ G+ + +T 
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTH 50

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  101 bits (254), Expect = 1e-25
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 486 TGRKINVTVVEGKDLM---PKDKSGKCDPYVKLQYG---KIVQRTRTAH-SPNHVWNQKF 538
           +  K  V V+    +      D     DPYV+L         +RTR  +   N VWN+ F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 539 ELD-EIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQ 597
           E   +      L +   +     DE +G+A   +  +  G  +++     +V    L + 
Sbjct: 61  EFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 120

Query: 598 IE 599
           +E
Sbjct: 121 LE 122

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 625 IVEARDLV---AADLRGTSDPYVKVQYGDLKKRTKLT 658
           ++ A  +      D+  T DPYV++         K T
Sbjct: 9   VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRT 45

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  105 bits (264), Expect = 2e-25
 Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 16/181 (8%)

Query: 484 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTAH-SPNHVWNQKFE 539
                ++ V +++  +L   D  G  DPYVK   L   K    T+    + N V+N++F 
Sbjct: 15  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 74

Query: 540 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELR 595
                    G+ L++  Y+ + F   + +G  +V +  +  G V + W  L+     E  
Sbjct: 75  FKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134

Query: 596 LQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRT 655
              +         + G+        + +VI+EA++L   D+ G SDPYVK+      KR 
Sbjct: 135 KLGDICFSLRYVPTAGK--------LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRL 186

Query: 656 K 656
           K
Sbjct: 187 K 187

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 99.1 bits (247), Expect = 2e-24
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 24/146 (16%)

Query: 472 SQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SP 530
            Q  L G+S + +    KI++TVV  + L  KDK+G  DPYV +Q GK  +RT+T + + 
Sbjct: 5   KQSVLDGTSKWSA----KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNL 60

Query: 531 NHVWNQKFELDEIGGGECLMVKCYNEEIFG------------DENMGSARVNLEGLVEGS 578
           N VW + F  +     + + V+  +E+               D+ +G   + +  L    
Sbjct: 61  NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM 120

Query: 579 VRDIWVPLEKVN-----TGELRLQIE 599
             D+W  L+K       +G +RL I 
Sbjct: 121 --DVWYNLDKRTDKSAVSGAIRLHIS 144

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 57.5 bits (139), Expect = 5e-10
 Identities = 20/38 (52%), Positives = 24/38 (63%)

Query: 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
             I + +V A+ L A D  G+SDPYV VQ G  KKRTK
Sbjct: 17  AKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTK 54

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 96.7 bits (241), Expect = 7e-24
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 478 GSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP--NHVWN 535
           GSS      G  + V +V  K L   D     DPYV+L      Q++  A        WN
Sbjct: 1   GSSGSSGPHG-TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWN 59

Query: 536 QKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLV-EGSVRDIWVPL--EKVNT 591
           + F      G   L  K +++++   D+ +G A + LE +  EGS+      +  ++   
Sbjct: 60  ETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYK 119

Query: 592 GELRLQIE 599
           GE+ + + 
Sbjct: 120 GEIWVALS 127

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
           G +E+V+V A+ L  AD     DPYV++      +++ 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSN 47

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 93.2 bits (232), Expect = 1e-22
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 14/129 (10%)

Query: 484 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFELD- 541
           S +   + V V    ++ PK K GK DP V + +    ++T+      N VWN+  E D 
Sbjct: 3   SGSSGMLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDL 61

Query: 542 ---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNT------ 591
               +     L +   + E  G ++ +G+A V L+ L     R +   L  +        
Sbjct: 62  RGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDT 121

Query: 592 -GELRLQIE 599
              + L I 
Sbjct: 122 GATIDLVIG 130

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
           G + +++  A ++      G  DP V V + D KK+TK
Sbjct: 7   GMLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTK 43

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 91.9 bits (228), Expect = 9e-22
 Identities = 27/155 (17%), Positives = 63/155 (40%), Gaps = 17/155 (10%)

Query: 470 SGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHS 529
           SGSQ    GS    S    ++ +TV+  K    K       PYV++      ++T   ++
Sbjct: 22  SGSQLGSMGSLTMKS----QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN 77

Query: 530 PNH-VWNQKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVE---GSVRDIWV 584
            N   W Q   +  +     L  + ++ +    D  +G+A +++   ++     + ++ V
Sbjct: 78  TNSPKWKQPLTVI-VTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVV 136

Query: 585 PLEK-------VNTGELRLQIEATRVDDNEGSRGQ 612
            L+           G+L + ++  +++    + G+
Sbjct: 137 TLQLGGDKEPTETIGDLSICLDGLQLESEVVTNGE 171

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 608 GSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
           GS G         +++ ++ A+            PYV+V      K+T+
Sbjct: 27  GSMGSLTMKSQ--LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTE 73

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 94.9 bits (236), Expect = 1e-21
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 29/188 (15%)

Query: 484 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ---YGKIVQRTRTAH-SPNHVWNQKFE 539
                ++ V +++  DL  KD +G  DPYVK+      K   +T+    + N ++N+ F+
Sbjct: 16  LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 75

Query: 540 LD---EIGGGECLMVKCYNEEIFG-DENMGSARV--NLEGLVEGSVRDIWVPL-----EK 588
                       L    Y+ + F   + +G   +   LE   +   R +W  +     EK
Sbjct: 76  FSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK 135

Query: 589 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY 648
            + GEL   +                    G + + I++A +L A DL G SDPYVK   
Sbjct: 136 ADLGELNFSLCYL--------------PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASL 181

Query: 649 GDLKKRTK 656
               +R K
Sbjct: 182 ISEGRRLK 189

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 87.6 bits (217), Expect = 1e-20
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 19/127 (14%)

Query: 489 KINVTVVEGKDLMPKDKSGK-----------CDPYVKLQYGKI-VQRTRTAHSPNH-VWN 535
            + + + E   L P   S +            DPY+ L      + +T T    N   W+
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 536 QKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVR--DIWVPLEKVNTG 592
            +F  D +  G  + +  +++   G D+ + +  +  E L++   R  + W+ LE    G
Sbjct: 67  DEFVTD-VCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EG 123

Query: 593 ELRLQIE 599
           ++ + I+
Sbjct: 124 KVYVIID 130

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 11/53 (20%)

Query: 618 NGWIELVIVEARDLVAADLR-----------GTSDPYVKVQYGDLKKRTKLTV 659
           NG +++ I EA  L                    DPY+ +   D +     T 
Sbjct: 5   NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATK 57

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 85.0 bits (210), Expect = 2e-19
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 21/156 (13%)

Query: 461 GSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGK----------CD 510
            SH  ++  SG     S SS  +   G  + V + E   L P   S +           D
Sbjct: 3   SSHHHHHHSSGLVPRGSMSSGTMKFNG-YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLD 61

Query: 511 PYVKLQYG-KIVQRTRT-AHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFG-DENMGSA 567
           PY+ +      V +T T   +    +N++F  + +  G  L +  ++E   G D  + + 
Sbjct: 62  PYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCAN-VTDGGHLELAVFHETPLGYDHFVANC 120

Query: 568 RVNLEGLVEGS----VRDIWVPLEKVNTGELRLQIE 599
            +  + L+  +      + WV LE    G++ + I 
Sbjct: 121 TLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVIT 154

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 11/50 (22%)

Query: 618 NGWIELVIVEARDLVAADLRG----------TSDPYVKVQYGDLKK-RTK 656
           NG++ + I EA  L                   DPY+ V    ++  +T 
Sbjct: 28  NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTS 77

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 82.5 bits (204), Expect = 1e-18
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 19/131 (14%)

Query: 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG------KIVQRTRTAH-SPNHVWNQKFE 539
            R + V V+ G  L  KD  G  DPYV++             +T+T   S N  WN++  
Sbjct: 19  SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78

Query: 540 LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEK---------- 588
                    L+ + ++E     D+ +G   V L  L   + R       K          
Sbjct: 79  FRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHK 138

Query: 589 -VNTGELRLQI 598
               G LRL++
Sbjct: 139 SRVKGYLRLKM 149

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 618 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL------KKRTK 656
           +  + + ++    L   D+ G SDPYV+V   D         +TK
Sbjct: 19  SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTK 63

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 82.6 bits (204), Expect = 2e-18
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 19/130 (14%)

Query: 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG------KIVQRTRTAH-SPNHVWNQKFEL 540
           R + V V+ G  L  KD  G  DPYV++             +T+T   S N  WN++   
Sbjct: 8   RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67

Query: 541 DEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEK----------- 588
             +     ++ + ++E     D+ +G   V L  L   + R       K           
Sbjct: 68  RVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS 127

Query: 589 VNTGELRLQI 598
              G LRL++
Sbjct: 128 RVKGYLRLKM 137

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 51.4 bits (123), Expect = 9e-08
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 618 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL------KKRTK 656
              + + ++    L   D+ G SDPYV+V   D         +TK
Sbjct: 7   TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTK 51

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 19/133 (14%)

Query: 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP---NHVWNQKFELDEI 543
             KI +TV+  K+L  KD     DP+ K+      Q   T       +  WNQ ++L  +
Sbjct: 4   FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDL-YV 62

Query: 544 GGGECLMVKCYNEEIFGDEN----MGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 599
           G  + + +  +N +    +     +G  R+    +               +TG  RL + 
Sbjct: 63  GKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLK-----------DTGYQRLDLC 111

Query: 600 ATRVDDNEGSRGQ 612
                D +  RGQ
Sbjct: 112 KLNPSDTDAVRGQ 124

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 615 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLKKRTK 656
           GS    I L ++ A++L   D     DP+ K+          T 
Sbjct: 1   GSEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTD 44

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 74.3 bits (183), Expect = 5e-16
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 11/117 (9%)

Query: 484 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ-----YGKIVQRTRTAH-SPNHVWNQK 537
            +    +  T++  K L P D +G  DPYVKL            RT+T   + N VWN+ 
Sbjct: 25  DQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNET 84

Query: 538 FELDEIGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKV 589
            +   I   +     L +   +E+ FG +E +G  R +L+ L     ++  + LE+V
Sbjct: 85  LQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 141

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 5/37 (13%)

Query: 625 IVEARDLVAADLRGTSDPYVKVQ-----YGDLKKRTK 656
           I+ A+ L   D  G +DPYVK+          K RTK
Sbjct: 35  IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTK 71

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTAH-SPNHVWNQKFELD 541
               + V +++ ++L  KD SG  DP+VK+      K    T+    + N  WN+ F  +
Sbjct: 24  QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 83

Query: 542 EIGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEK 588
                +     L ++  + + F  ++ +G   + L  +    ++  W  L+ 
Sbjct: 84  GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 625 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLT 658
           I++A++L A D  GTSDP+VK+     KK    T
Sbjct: 32  IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLET 65

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 20/120 (16%)

Query: 488 RKINVTVVEGKDLMPKDKSGKCDPYVKL--------------QYGKIVQRTRTAH-SPNH 532
             + + +++ ++L+P+D +G  DP+VK+                 +  +RT+    S N 
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 533 VWNQKFELDEIGGGEC----LMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 587
            WNQ      I   +     L V  ++ + F  ++ +G   ++L           W PL+
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 624 VIVEARDLVAADLRGTSDPYVKV 646
            I++AR+LV  D  G SDP+VKV
Sbjct: 23  HILQARNLVPRDNNGYSDPFVKV 45

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 484 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ---YGKIVQRTRTAH-SPNHVWNQKFE 539
                ++ V +++  +L   D  G  DPYVK+      K    T+    + N V+N++F 
Sbjct: 30  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 89

Query: 540 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 587
                   GG+ L++  Y+ + F   + +G  +V +  +  G V + W  L+
Sbjct: 90  FKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 625 IVEARDLVAADLRGTSDPYVKVQ---YGDLKKRTK 656
           I++A +L A D+ GTSDPYVKV        K  TK
Sbjct: 40  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETK 74

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 10/116 (8%)

Query: 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKL-----QYGKIVQRTRTA-HSPNHVWNQ--KF 538
              + V V + K+L+P D +G  DPYVKL        +  Q+T+T   S N  WN+  +F
Sbjct: 30  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89

Query: 539 ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 593
           +L E      L V+ ++ ++   ++ MGS    +  L + +  D W  L     GE
Sbjct: 90  QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL-QKAGVDGWFKLLSQEEGE 144

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 605 DNEGSRGQ---NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQ-YGDLKKRTK 656
           D+   RG+           + +V+ +A++LV  D  G SDPYVK++   D K  +K
Sbjct: 14  DSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESK 69

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 63.6 bits (155), Expect = 4e-12
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 484 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ---YGKIVQRTRTAH-SPNHVWNQKFE 539
                ++ V +++  +L   D  G  DPYVK+      K    T+    + N V+N++F 
Sbjct: 38  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 97

Query: 540 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 587
                   GG+ L++  Y+ + F   + +G  +V +  +  G V + W  L+
Sbjct: 98  FKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 585 PLEKVNTGELRLQIEATRVDDNEGSRGQ-----NIGSGNGWIELVIVEARDLVAADLRGT 639
           P      G +   +        E   G+     +    N  + + I++A +L A D+ GT
Sbjct: 3   PGISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGT 62

Query: 640 SDPYVKVQ---YGDLKKRTK 656
           SDPYVKV        K  TK
Sbjct: 63  SDPYVKVFLLPDKKKKFETK 82

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 14/117 (11%)

Query: 484 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKL-----QYGKIVQRTRTAH-SPNHVWNQK 537
            + G ++ VT++  KDL  ++     +PYVK+     +  K  +RT+T   +    WNQ 
Sbjct: 14  DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 73

Query: 538 FELDEIGGGE----CLMVKCYNEEIFG-DEN--MGSARVNLEGLVEGSVRDIWVPLE 587
           F    +   E     L +  +++     +E+  +G   + LE          W  L+
Sbjct: 74  FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQ 129

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 5/38 (13%)

Query: 624 VIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTK 656
            I+ A+DL + +     +PYVK+     +    K+RTK
Sbjct: 23  TILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 60

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 66.1 bits (160), Expect = 2e-11
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 492 VTVVEGKDLM---PKDKSGKCDPYVKLQYGKIV-QRTRTAHSPNH---VWNQKFELD-EI 543
           V V+    +      D     DPYV+L        R RT H  N    VWN+ FE   + 
Sbjct: 22  VVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 81

Query: 544 GGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVP 585
                L +   +     DE +G+A   +  +  G  +++   
Sbjct: 82  NQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFI 123

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 41.9 bits (97), Expect = 6e-04
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 6/38 (15%)

Query: 625 IVEARDL---VAADLRGTSDPYVKVQYGDL---KKRTK 656
           ++ A  +      D+  T DPYV++        +KRT+
Sbjct: 24  VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTR 61

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 14/115 (12%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKL-----QYGKIVQRTRTAH-SPNHVWNQKFE 539
            G ++ VT++  KDL  ++     +PYVK+     +  K  +RT+T   +    WNQ F 
Sbjct: 19  VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFI 78

Query: 540 LDEIGGGE----CLMVKCYNEEIFG-DEN--MGSARVNLEGLVEGSVRDIWVPLE 587
              +   E     L +  +++     +E+  +G   + LE          W  L+
Sbjct: 79  YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQ 132

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 5/38 (13%)

Query: 624 VIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTK 656
            I+ A+DL + +     +PYVK+     +    K+RTK
Sbjct: 26  TILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 63

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 491 NVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLM 550
            V V + K    ++K    + YV L+   +   T         W Q F  +       L 
Sbjct: 8   CVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLT 64

Query: 551 VKCYNEEIFGDENMGSARVNLEGLVEGSVR--DIWVPLEK 588
           V+ +N+ +  D  +G+  + L  + + +      W+ L+ 
Sbjct: 65  VEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 104

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 15/143 (10%)

Query: 465 LNNFHSGSQQSLSGSSNF---ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKL-----Q 516
           + + H      + G+      I    R + + ++EGK L+ K   G CDPYVK+      
Sbjct: 1   MGHHHHHHSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPED 59

Query: 517 YGKIVQRTRTA-HSPNHVWNQ--KFELDEIGGGECLMVKCYNEEIFGDEN--MGSARVNL 571
                Q+T+T     +  +++   F + E    + L+V  +N      ++  +G     +
Sbjct: 60  SRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGV 119

Query: 572 EGLVEGS-VRDIWVPLEKVNTGE 593
           + L+        W  L   + G 
Sbjct: 120 KSLLTPDKEISGWYYLLGEHLGR 142

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 483 ISRTGRKINVTVVEGKDLMPKDKS-GKCDPYVKL-----QYGKIVQRTRTA-HSPNHVWN 535
           +     ++ V V+  + L  K  S     PYVK+           ++TR A  + + ++ 
Sbjct: 25  MEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQ 84

Query: 536 QKFELDEIGGGECLMVKCYNEEIFGDEN--MGSARVNLEGLVEGSVRDIWVPL 586
           Q    DE   G+ L V  + +    D    MG A++ LE L   S+   W  L
Sbjct: 85  QSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 16/113 (14%)

Query: 488 RKINVTVVEGKDLMPKDKSGKCDPYVKL-------QYGKIVQRTRTA-HSPNHVWNQKFE 539
             + + V+  KDL+ +D     +PYVK        +  K  ++T+ +  + N  +N+   
Sbjct: 20  GTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSK--RKTKISRKTRNPTFNEMLV 76

Query: 540 LDEIGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 587
                        L +   + E    +  +G   + L+          W  L 
Sbjct: 77  YSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGK-CDPYVKLQ---YGKIVQRTRTAH-SPNHVWNQKFEL 540
             +   V + E + L   D+     DPY+K+      K   +TR    + +  +++ F  
Sbjct: 20  ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79

Query: 541 DEIGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGL 574
             I   +     L     + + F  D+ +G   + L G+
Sbjct: 80  YGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 547
             + V V + K    ++K    + YV L+   +   T         W Q F  +      
Sbjct: 14  SLLCVGVKKAKFDGAQEKF---NTYVTLKVQNVESTTIAVRGSQPSWEQDFMFEINRLDL 70

Query: 548 CLMVKCYNEEIFGDENMGSARVNLEGLV--EGSVRDIWVPLEK 588
            L V+ +N+ +  D  +G+  + L  +          W+ L+ 
Sbjct: 71  GLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 113

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 14/115 (12%)

Query: 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQ----YGKIVQRTRTAH-SPNHVWNQKFE--- 539
            ++ VT +E       +  G CD YV+       G +  +T       +  W +      
Sbjct: 26  AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 540 -LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTG 592
             +E+     L +     + F      G  R+ L+G         W  L+     
Sbjct: 83  AEEEL-PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPS 136

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 18/100 (18%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF- 538
           T  K+ V ++E K+L   D  G  DPYVK   +Q GK +++ +T    ++ N  +N+ F 
Sbjct: 23  TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 82

Query: 539 ------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNL 571
                 ++ ++     ++V   + +  G ++ +G   V  
Sbjct: 83  FEVPFEQIQKV----QVVVTVLDYDKIGKNDAIGKVFVGY 118

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 624 VIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
           VI+EA++L   D+ G SDPYVK+      KR K
Sbjct: 30  VILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK 62

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 18/100 (18%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF- 538
           +   I V +++ ++L   D  G  DPYVK   +   K V++ +T     + N ++N+ F 
Sbjct: 14  SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFA 73

Query: 539 ------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNL 571
                 +L E      +++   +++    ++ +G   ++ 
Sbjct: 74  FDIPTEKLRET----TIIITVMDKDKLSRNDVIGKIYLSW 109

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 624 VIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
            I++AR+L A D+ GTSDPYVKV      KR +
Sbjct: 21  NIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVE 53

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 17/124 (13%)

Query: 484 SRTGRKINVTVVEGKDLMPKD-KSGKCDPYVKLQ-------YGKIVQRTRTAH-SPNHVW 534
            +  + + V V E   L   D    + +PYVK          GK  ++T     + N ++
Sbjct: 19  EQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGK--RKTSIKRDTVNPLY 76

Query: 535 NQKFE----LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKV 589
           ++          +     L    ++   FG +  +G A + ++        D  +PL   
Sbjct: 77  DETLRYEIPESLL-AQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135

Query: 590 NTGE 593
            + E
Sbjct: 136 ISAE 139

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 17/120 (14%)

Query: 484 SRTGRKINVTVVEGKDLMP-------KDKSGKCDPYVKLQY---GKIVQRTRTAH-SPNH 532
                 + V V+E +DL P       +      +PYVK+      K  ++T     +   
Sbjct: 22  DLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKP 81

Query: 533 VWNQKFE----LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 587
           V+ +++       E      L++   + + F     +G   V L  +        W  L 
Sbjct: 82  VFEERYTFEIPFLEA-QRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 20/112 (17%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF- 538
           T   + V V++ + L   D SG  DPYVK       K + + +T     +PN V+N+ F 
Sbjct: 28  TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV 87

Query: 539 ------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW 583
                  L+EI     +     + E    +E +G  R+ L    EGS    W
Sbjct: 88  FDIPCESLEEI----SVEFLVLDSERGSRNEVIG--RLVLGATAEGSGGGHW 133

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 624 VIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
           V+++AR L  +D+ G SDPYVKV     KKR  
Sbjct: 35  VVLKARHLPKSDVSGLSDPYVKVNLYHAKKRIS 67

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 53.8 bits (128), Expect = 1e-07
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 12/119 (10%)

Query: 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH-VWNQKFELD--EI 543
              + V+    + L     +   D Y+K+ +G    RT    + N+  W  K + +   +
Sbjct: 393 LAHLVVSNFRAEHLWGDY-TTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLL 451

Query: 544 GGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT 601
             G  L V+ ++ +    D+ +GS   +      G   ++   L   N G ++    A 
Sbjct: 452 STGGPLRVQVWDADYGWDDDLLGSCDRSPH---SGFH-EVTCEL---NHGRVKFSYHAK 503

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ----YGKIVQRTRTA---HSPNHVWNQKF 538
             ++  + +++  +L    +       +++             RT     S   V+N+ F
Sbjct: 41  KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVF 100

Query: 539 E----LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGL-VEGSVRDIWVPL 586
                   +     L V     +    +E +G A+++L  +   G     W  L
Sbjct: 101 WVSMSYPALHQKT-LRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 20/115 (17%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF- 538
               + V ++    L   D +G  DP+VK           + +T     + N  +N++F 
Sbjct: 35  QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFF 94

Query: 539 ------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPL 586
                 +L +      L +  ++ +I   ++ +G  ++ +    E      W   
Sbjct: 95  YDIKHSDLAKK----SLDISVWDYDIGKSNDYIGGCQLGISAKGER--LKHWYEC 143

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 624 VIVEARDLVAADLRGTSDPYVKVQ-YGDLKKRTK 656
            I+    L A D  G SDP+VK+    D+ K+ K
Sbjct: 42  GIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAK 75

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 51.1 bits (121), Expect = 8e-07
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 15/145 (10%)

Query: 485 RTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ-----YGKIVQRTRTAHSPNHVWNQKFE 539
           R    + + ++E ++L PK        Y +L      Y +   + R+A      W + FE
Sbjct: 8   RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFE 62

Query: 540 LDEIGGGECLMVKCYNEEIFG-----DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGEL 594
            + +     L +  Y +            +G   V +  L      + W P+        
Sbjct: 63  FNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGG 122

Query: 595 RLQIEATRVDDNEGSRGQNIGSGNG 619
              + +     + G  G     G  
Sbjct: 123 SGGMGSGGGGGSGGGSGGKGKGGCP 147

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKL-------QYGKIVQRTRTA-HSPNHVWNQK 537
              K+ V V   ++L+   + G  DPYV++       + G+  ++T  +  + N V++Q 
Sbjct: 22  QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGR--RKTHVSKKTLNPVFDQS 78

Query: 538 FE----LDEIGGGECLMVKCYNEEIFG-DEN--MGSARVNLEGLVEGSVRDIWVPLEK 588
           F+    L E+     L V   N   F   +   +G   V L           W  L +
Sbjct: 79  FDFSVSLPEV-QRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE 135

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 19/120 (15%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRT-AHSPNHV-WNQKFELD-- 541
           +   + V +    +L      G+ D   K+ +      +R   +  +   +++ F     
Sbjct: 19  SHMALIVHLKTVSEL-----RGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVA 73

Query: 542 -EIGGGECLMVKCYNEE-IFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 599
             I   E L ++ +N   +F ++ +G+ R+ L+ +VE +  ++   L   N   ++  + 
Sbjct: 74  SSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLS 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 60/392 (15%), Positives = 117/392 (29%), Gaps = 113/392 (28%)

Query: 15  LNVEQVVEFWKNLL---EEKPLL---PFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATV 68
            + + V +  K++L   E   ++     V   + L W                       
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL-------------------- 72

Query: 69  QYGQYQHRIHVEEL---NKKWNQIILKTSPITPLEHCEWLNKLLMEVWPGYINPKLSIRF 125
              +   +  VEE+   N K+    +KT    P         ++  ++    +     R 
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP--------SMMTRMYIEQRD-----RL 119

Query: 126 SQIVEKRLKHRKPRLIEKIELQEFSLGSTSPC--LGLHGTRWSSSG----------DQRV 173
               +   K+   RL   ++L++ +L    P   + + G     SG            +V
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGV--LGSGKTWVALDVCLSYKV 176

Query: 174 MQLGFD----WDANDISI-------LLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEG 222
            Q   D    W    +++        +L  L K LL        S       + + I   
Sbjct: 177 -QCKMDFKIFW----LNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 223 KAVLYSFVSIP----------DV---RIGVAFGSGGSQSLPATELPGVSNWLA-----RL 264
           +A L   +             +V   +   AF     + L  T    V+++L+      +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 265 INETLVKTLVEPR-----RRCYSLPAVDLRKKAVGGI-VYVRVISASKLSRSSLRGSPSR 318
             +    TL          +       DL ++ +      + +I+ S      +R   + 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES------IRDGLAT 343

Query: 319 RQQNYSADSSLEEHYEDKDLTTFVEIELEELT 350
              N+       +H     LTT +E  L  L 
Sbjct: 344 WD-NW-------KHVNCDKLTTIIESSLNVLE 367

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	680
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.97
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.96
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.96
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.95
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.78
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.77
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.76
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.76
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.76
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.75
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.75
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.75
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.73
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.73
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.72
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.72
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.72
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.71
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.7
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.7
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.7
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.7
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.69
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.69
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.69
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.69
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.69
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.68
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.68
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.68
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.68
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.67
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.67
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.66
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.66
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.66
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.66
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.65
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.64
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.64
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.63
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.63
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.63
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.63
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.62
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.61
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.61
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.61
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.61
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.61
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.6
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.59
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.59
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.59
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.59
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.58
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.58
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.58
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.57
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.57
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.56
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.56
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.56
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.56
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.55
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.54
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.54
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.53
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.52
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.52
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.52
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.51
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.49
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.47
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.47
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.45
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.45
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.44
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.38
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.34
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.32
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.3
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.25
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.25
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.2
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.12
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.04
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.94
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.93
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.8
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.8
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.79
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.79
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.75
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.73
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.71
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.49
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.38
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	85.1
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	83.16
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	82.41

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.97  E-value=2e-29  Score=261.29  Aligned_cols=225  Identities=19%  Similarity=0.248  Sum_probs=183.7

Q ss_pred             ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc---eeeeecc-CCCCCCccce
Q 005736          290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE---LTRRTDA-RPGSDPRWDS  365 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~---~~~~T~v-~~t~nP~Wne  365 (680)
                      +....|.|.|+|++|++|++.|..|.+                      ||||++.++.   ..++|++ ++++||+|||
T Consensus        14 y~~~~~~L~v~v~~a~~L~~~d~~~~~----------------------dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne   71 (284)
T 2r83_A           14 YDFQNNQLLVGIIQAAELPALDMGGTS----------------------DPYVKVFLLPDKKKKFETKVHRKTLNPVFNE   71 (284)
T ss_dssp             EETTTTEEEEEEEEEECCCCCSSSSSC----------------------CEEEEEEEETCTTSCEECCCCCSCSSCEEEE
T ss_pred             EECCCCEEEEEEEEeeCCCCCCCCCCC----------------------CeEEEEEEEcCCCceEeCCcccCCCCCeeCc
Confidence            334459999999999999999876643                      9999999963   4778988 7899999999


Q ss_pred             eEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC
Q 005736          366 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV  442 (680)
Q Consensus       366 ~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~  442 (680)
                      +|.|.+...   ...|.|+|||+|.. ++|++||++.++|.++..+                      ...+.|++|...
T Consensus        72 ~f~f~v~~~~~~~~~l~~~V~d~d~~-~~~~~lG~~~i~l~~l~~~----------------------~~~~~w~~L~~~  128 (284)
T 2r83_A           72 QFTFKVPYSELAGKTLVMAVYDFDRF-SKHDIIGEFKVPMNTVDFG----------------------HVTEEWRDLQSA  128 (284)
T ss_dssp             EEEECCCGGGCTTCEEEEEEEECCSS-SCCCEEEEEEEEGGGCCCS----------------------SCEEEEEECBCC
T ss_pred             eEEEEechHHhCcCEEEEEEEECCCC-CCCceeEEEEEcchhcccC----------------------CcceeEEEeecc
Confidence            999998753   46899999999986 5899999999999998643                      234567777543


Q ss_pred             ------ceeeEEEEEEEeeeecCCCCCCCCCCcCCCCCcccccccccCCCCcEEEEEEEEeecCCCCCCCCCCCcEEEEE
Q 005736          443 ------NSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ  516 (680)
Q Consensus       443 ------~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~  516 (680)
                            ..|++.+.+.+.                              +..+.|.|+|++|++|+..+..+.+||||+++
T Consensus       129 ~~~~~~~~G~i~l~l~~~------------------------------p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~  178 (284)
T 2r83_A          129 EKEEQEKLGDICFSLRYV------------------------------PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIH  178 (284)
T ss_dssp             SSCCCCCCCEEEEEEEEE------------------------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEE
T ss_pred             ccccccccccEEEEEEec------------------------------CcCCceEEEEEEeECCCCcCCCCCcCeEEEEE
Confidence                  257877766432                              12348999999999999999889999999999


Q ss_pred             EC--C---EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC-CCceeEEEEEEccccc-----------
Q 005736          517 YG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVNLEGLV-----------  575 (680)
Q Consensus       517 l~--~---~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~-~d~~iG~~~i~L~~l~-----------  575 (680)
                      +.  +   .+++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.. ++++||++.+++..+.           
T Consensus       179 ~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~  258 (284)
T 2r83_A          179 LMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLA  258 (284)
T ss_dssp             EEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred             EEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHH
Confidence            83  2   57899999 999999999999998754   46899999999988 8999999999997631           


Q ss_pred             -CCCeeeEEEeCCCC
Q 005736          576 -EGSVRDIWVPLEKV  589 (680)
Q Consensus       576 -~~~~~~~w~~L~~~  589 (680)
                       .+....+|++|.+.
T Consensus       259 ~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          259 NPRRPIAQWHTLQVE  273 (284)
T ss_dssp             STTSCEEEEEECBCH
T ss_pred             CCCCchheeeecCCc
Confidence             23466799999864

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.96  E-value=1.1e-28  Score=255.53  Aligned_cols=176  Identities=26%  Similarity=0.405  Sum_probs=159.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~-  559 (680)
                      +.|.|+|++|++|+.++..+.+||||+++++   ++.++|+++ ++.||.|||+|.|.+..   ....|.|+|||++.. 
T Consensus        19 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~   98 (284)
T 2r83_A           19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS   98 (284)
T ss_dssp             TEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSS
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCC
Confidence            5899999999999999988999999999994   468899999 99999999999999874   257999999999988 


Q ss_pred             CCceeEEEEEEcccccCCCeeeEEEeCCCC------CCeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCcc
Q 005736          560 GDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVA  633 (680)
Q Consensus       560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~  633 (680)
                      +|++||++.++|.++..+.....|++|...      ..|+|++++.|.              +..+.|+|.|++|+||+.
T Consensus        99 ~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~--------------p~~~~l~v~v~~a~~L~~  164 (284)
T 2r83_A           99 KHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYV--------------PTAGKLTVVILEAKNLKK  164 (284)
T ss_dssp             CCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCC
T ss_pred             CCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEec--------------CcCCceEEEEEEeECCCC
Confidence            899999999999999888888999999753      359999999998              677899999999999999


Q ss_pred             ccCCCCCCCEEEEEEC--C---eEEeeeeeecCCCCcccceeEEEecCC
Q 005736          634 ADLRGTSDPYVKVQYG--D---LKKRTKLTVACLSGHIQNSKSSMASNL  677 (680)
Q Consensus       634 ~d~~g~~DPyV~v~lg--~---~~~kT~~~k~tlnP~wnE~f~f~V~n~  677 (680)
                      +|..|.+||||+|++.  +   .++||+++++|+||+|||.|.|.+...
T Consensus       165 ~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~  213 (284)
T 2r83_A          165 MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE  213 (284)
T ss_dssp             CSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTT
T ss_pred             cCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHH
Confidence            9999999999999994  2   478999999999999999999998654

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.96  E-value=5.7e-29  Score=259.25  Aligned_cols=226  Identities=19%  Similarity=0.257  Sum_probs=178.7

Q ss_pred             ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE---cceeeeecc-CCCCCCccce
Q 005736          290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL---EELTRRTDA-RPGSDPRWDS  365 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~---~~~~~~T~v-~~t~nP~Wne  365 (680)
                      +....|.|+|+|++|++|+++|..|.+                      ||||++.+   +.+.++|++ ++++||+|||
T Consensus        15 y~~~~~~L~v~v~~a~~L~~~d~~g~~----------------------dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne   72 (296)
T 1dqv_A           15 YLYGSDQLVVRILQALDLPAKDSNGFS----------------------DPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE   72 (296)
T ss_dssp             CCSSSCEEEEEEEEEECCCCCSTTSCC----------------------CEEEEEECTTSTTSCEECCCCCSCSSCEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCcCCCCCc----------------------CeEEEEEEEcCCCeeEeCCccCCCCCCcEee
Confidence            334569999999999999999876653                      99999999   567889998 7899999999


Q ss_pred             eEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEe-cccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCC
Q 005736          366 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVK-MKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEG  441 (680)
Q Consensus       366 ~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~  441 (680)
                      +|.|.+...   ...|.|+|||+|.. .+|++||++.++ +.++....                     .....|+++..
T Consensus        73 ~f~f~v~~~~l~~~~L~~~V~d~d~~-~~~~~iG~~~i~~l~~~~~~~---------------------~~~~~w~~L~~  130 (296)
T 1dqv_A           73 TFQFSVPLAELAQRKLHFSVYDFDRF-SRHDLIGQVVLDNLLELAEQP---------------------PDRPLWRDILE  130 (296)
T ss_dssp             EEEEECCGGGGSSCCCEEEEEECCSS-SCCCEEEEEECCCTTGGGSSC---------------------SSCCCCEECBC
T ss_pred             EEEEEecHHHhcCCEEEEEEEEcCCC-CCCceEEEEEeccccccccCC---------------------ccceeeecccc
Confidence            999998643   34799999999986 689999999996 44443211                     11234555533


Q ss_pred             -----CceeeEEEEEEEeeeecCCCCCCCCCCcCCCCCcccccccccCCCCcEEEEEEEEeecCCCCCCCCCCCcEEEEE
Q 005736          442 -----VNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ  516 (680)
Q Consensus       442 -----~~~G~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~  516 (680)
                           ...|++.+.+.+.                              +..+.|.|+|++|++|+.++..+.+||||+++
T Consensus       131 ~~~~~~~~G~i~vsl~y~------------------------------~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~  180 (296)
T 1dqv_A          131 GGSEKADLGELNFSLCYL------------------------------PTAGLLTVTIIKASNLKAMDLTGFSDPYVKAS  180 (296)
T ss_dssp             CSSCCSCCCEEEEEEEEE------------------------------TTTTEEEEEEEEEESCCCCSSSSCCCEEEEEC
T ss_pred             ccccccccceEEEEEEec------------------------------cccceeEEEEEEeecCCccCCCCCCCcEEEEE
Confidence                 2358888776432                              12358999999999999999889999999999


Q ss_pred             EC--C---EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC-CCceeEEEEEEcccccC----------
Q 005736          517 YG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVNLEGLVE----------  576 (680)
Q Consensus       517 l~--~---~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~-~d~~iG~~~i~L~~l~~----------  576 (680)
                      +.  +   .+++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.. ++++||.+.+++.++..          
T Consensus       181 l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~  260 (296)
T 1dqv_A          181 LISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEML  260 (296)
T ss_dssp             CCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSS
T ss_pred             EEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHH
Confidence            94  2   67899999 999999999999998764   45799999999988 89999999999987532          


Q ss_pred             ---CCeeeEEEeCCCC
Q 005736          577 ---GSVRDIWVPLEKV  589 (680)
Q Consensus       577 ---~~~~~~w~~L~~~  589 (680)
                         +....+|++|...
T Consensus       261 ~~~~~~~~~w~~L~~~  276 (296)
T 1dqv_A          261 ANPRKPVEHWHQLVEE  276 (296)
T ss_dssp             SSSSSCSCSCCCCBBC
T ss_pred             hCCCCceeEeeeccCc
Confidence               3345677777653

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.95  E-value=6.9e-28  Score=251.09  Aligned_cols=176  Identities=26%  Similarity=0.381  Sum_probs=154.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC-
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~-  559 (680)
                      +.|.|+|++|++|+.++..+.+||||++++   +++.++|+++ +++||.|||+|.|.+...   ...|.|+|||++.+ 
T Consensus        20 ~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~   99 (296)
T 1dqv_A           20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS   99 (296)
T ss_dssp             CEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSS
T ss_pred             CEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCC
Confidence            489999999999999998899999999999   5688999999 999999999999998643   45899999999988 


Q ss_pred             CCceeEEEEEE-cccccC-CCeeeEEEeCCCC-----CCeEEEEEEEEEEecCCCCCCCccCCCCCceEEEEEEEeecCc
Q 005736          560 GDENMGSARVN-LEGLVE-GSVRDIWVPLEKV-----NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLV  632 (680)
Q Consensus       560 ~d~~iG~~~i~-L~~l~~-~~~~~~w~~L~~~-----~~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~L~V~I~~a~~L~  632 (680)
                      +|++||++.++ +.++.. ......|++|...     ..|+|.+++.|.              +..+.|+|.|++|+||+
T Consensus       100 ~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~--------------~~~~~l~v~v~~a~~L~  165 (296)
T 1dqv_A          100 RHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYL--------------PTAGLLTVTIIKASNLK  165 (296)
T ss_dssp             CCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEE--------------TTTTEEEEEEEEEESCC
T ss_pred             CCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEec--------------cccceeEEEEEEeecCC
Confidence            89999999996 555443 3455689999653     359999999998              67799999999999999


Q ss_pred             cccCCCCCCCEEEEEEC--C---eEEeeeeeecCCCCcccceeEEEecCC
Q 005736          633 AADLRGTSDPYVKVQYG--D---LKKRTKLTVACLSGHIQNSKSSMASNL  677 (680)
Q Consensus       633 ~~d~~g~~DPyV~v~lg--~---~~~kT~~~k~tlnP~wnE~f~f~V~n~  677 (680)
                      ++|..|.+||||+|++.  +   .++||+++++|+||+|||.|.|.|...
T Consensus       166 ~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~  215 (296)
T 1dqv_A          166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE  215 (296)
T ss_dssp             CCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG
T ss_pred             ccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHH
Confidence            99999999999999995  2   588999999999999999999998753

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.78  E-value=1.9e-18  Score=160.97  Aligned_cols=112  Identities=21%  Similarity=0.337  Sum_probs=98.9

Q ss_pred             CcEEEEEEEEeecCCCCCC----------CCCCCcEEEEEECCEE-Eeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEE
Q 005736          487 GRKINVTVVEGKDLMPKDK----------SGKCDPYVKLQYGKIV-QRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY  554 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~----------~~~~dpyv~v~l~~~~-~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~  554 (680)
                      .|.|+|+|++|++|+++|.          .+.+||||++.++++. .+|+++ +|+||.|||+|.|.+.+ ...|.|+||
T Consensus        28 ~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~V~  106 (157)
T 2fk9_A           28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELAVF  106 (157)
T ss_dssp             EEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEE
T ss_pred             ccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEEEE
Confidence            4699999999999998772          3679999999998754 799999 99999999999999874 468999999


Q ss_pred             EecCC-CCceeEEEEEEcccccCC----CeeeEEEeCCCCCCeEEEEEEEEE
Q 005736          555 NEEIF-GDENMGSARVNLEGLVEG----SVRDIWVPLEKVNTGELRLQIEAT  601 (680)
Q Consensus       555 d~~~~-~d~~iG~~~i~L~~l~~~----~~~~~w~~L~~~~~G~i~l~l~~~  601 (680)
                      |++.. +|++||.+.|+|.++..+    ...+.||+|++  +|+|+++++|.
T Consensus       107 D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~~  156 (157)
T 2fk9_A          107 HETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITLT  156 (157)
T ss_dssp             ECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred             ECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEEE
Confidence            99988 799999999999998854    67899999986  89999999873

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=6.6e-18  Score=155.19  Aligned_cols=116  Identities=22%  Similarity=0.285  Sum_probs=104.1

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEEecCC-C
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF-G  560 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d~~~~-~  560 (680)
                      .+.|.|+|++|++|+..+. +.+||||+++++++.++|+++ ++.||.|||+|.|.+..    ....|.|+|||++.. +
T Consensus         6 ~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~   84 (140)
T 2dmh_A            6 SGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ   84 (140)
T ss_dssp             CCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSS
T ss_pred             CcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCC
Confidence            4699999999999999888 999999999999999999999 99999999999999874    367999999999988 8


Q ss_pred             CceeEEEEEEcccccCCCeeeEEEe---CCCCC----CeEEEEEEEEEEe
Q 005736          561 DENMGSARVNLEGLVEGSVRDIWVP---LEKVN----TGELRLQIEATRV  603 (680)
Q Consensus       561 d~~iG~~~i~L~~l~~~~~~~~w~~---L~~~~----~G~i~l~l~~~~~  603 (680)
                      |++||++.++|.++..+...+.|++   |.+..    .|+|+++++|.+.
T Consensus        85 ~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           85 NKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             CCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred             CceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence            9999999999999988888889988   65432    4999999999853

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.76  E-value=1.7e-17  Score=154.03  Aligned_cols=113  Identities=33%  Similarity=0.580  Sum_probs=102.5

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC------
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF------  559 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~------  559 (680)
                      .+.|.|+|++|++|+..+..+.+||||+++++++.++|+++ ++.||.|||+|.|.+..+.+.|.|+|||++..      
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~   95 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVK   95 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHH
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCcccccc
Confidence            46999999999999999988999999999999999999999 99999999999999988778999999999973      


Q ss_pred             ------CCceeEEEEEEcccccCCCeeeEEEeCCCC-----CCeEEEEEEEEE
Q 005736          560 ------GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEAT  601 (680)
Q Consensus       560 ------~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~~~  601 (680)
                            +|++||++.++|.++  ......|++|...     ..|+|+++++|.
T Consensus        96 ~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           96 QRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             TTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             ccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                  799999999999998  4456899999853     469999999874

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.76  E-value=4.7e-18  Score=154.77  Aligned_cols=114  Identities=24%  Similarity=0.345  Sum_probs=103.5

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCce
Q 005736          486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDEN  563 (680)
Q Consensus       486 ~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~  563 (680)
                      ..+.|.|+|++|++|+..+..+.+||||+++++++.++|+++ ++.||.|||+|.|.+.+....|.|+|||++.. +|++
T Consensus        11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~   90 (133)
T 2ep6_A           11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDF   90 (133)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEE
T ss_pred             CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCe
Confidence            346999999999999999988999999999999999999999 99999999999999988788999999999988 8999


Q ss_pred             eEEEEEEcccccCCCeeeEEEeCCCC-----CCeEEEEEEEEE
Q 005736          564 MGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEAT  601 (680)
Q Consensus       564 iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~~~  601 (680)
                      ||++.++|.++..+.  ..|++|...     ..|+|+++++|.
T Consensus        91 lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           91 LGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             CCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             eEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEEE
Confidence            999999999987644  589999753     469999999886

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.76  E-value=3.9e-18  Score=153.72  Aligned_cols=113  Identities=24%  Similarity=0.356  Sum_probs=100.9

Q ss_pred             cEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---EEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecCC
Q 005736          488 RKINVTVVEGKDLMPK---DKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~---~~~~~~dpyv~v~l~~---~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~~  559 (680)
                      +.|.|+|++|++|+.+   +..+.+||||++++++   +.++|+++ ++.||.|||+|.|.+.. ....|.|+|||++..
T Consensus         3 ~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~   82 (126)
T 1rlw_A            3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV   82 (126)
T ss_dssp             EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred             cEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCC
Confidence            5899999999999874   5568899999999964   89999999 99999999999999964 477899999999987


Q ss_pred             CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEEEE
Q 005736          560 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA  600 (680)
Q Consensus       560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l~~  600 (680)
                      +|++||++.++|.++..+.....|++|.+..+|+|+++++.
T Consensus        83 ~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~  123 (126)
T 1rlw_A           83 MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV  123 (126)
T ss_dssp             CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEEC
T ss_pred             CCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEe
Confidence            88999999999999998888999999998777888887754

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.75  E-value=6.1e-18  Score=154.61  Aligned_cols=118  Identities=25%  Similarity=0.363  Sum_probs=105.4

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc--CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCce
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDEN  563 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~--~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~  563 (680)
                      .+.|.|+|++|++|+..+..+.+||||+++++++.++|+++  ++.||.|||+|.|.+.+....|.|+|||++.. +|++
T Consensus         9 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~   88 (136)
T 1wfj_A            9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDA   88 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCC
T ss_pred             cEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCce
Confidence            46999999999999999988999999999998888999988  69999999999999998788999999999988 8999


Q ss_pred             eEEEEEEccccc-CCCeeeEEEeCCC--CCCeEEEEEEEEEEec
Q 005736          564 MGSARVNLEGLV-EGSVRDIWVPLEK--VNTGELRLQIEATRVD  604 (680)
Q Consensus       564 iG~~~i~L~~l~-~~~~~~~w~~L~~--~~~G~i~l~l~~~~~~  604 (680)
                      ||++.++|.++. .+.....||+|..  ...|+|+++++|.+.+
T Consensus        89 lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           89 VGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             SEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             EEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeCC
Confidence            999999999984 4556789999963  2369999999999654

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.75  E-value=1.1e-17  Score=156.34  Aligned_cols=117  Identities=26%  Similarity=0.328  Sum_probs=96.8

Q ss_pred             CCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEec
Q 005736          485 RTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEE  557 (680)
Q Consensus       485 ~~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~------~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~  557 (680)
                      ...+.|+|+|++|++|+..+..+.+||||+++++.      ..++|+++ ++.||.|||+|.|.+......|.|+|||++
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d   96 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDEN   96 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECC
Confidence            34569999999999999998889999999999952      68899999 999999999999999887889999999999


Q ss_pred             CC-CCceeEEEEEEcccccCCCe------eeEEEeCCCC-----CCeEEEEEEEEE
Q 005736          558 IF-GDENMGSARVNLEGLVEGSV------RDIWVPLEKV-----NTGELRLQIEAT  601 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~~~~------~~~w~~L~~~-----~~G~i~l~l~~~  601 (680)
                      .. +|++||++.++|.++..+..      ...||+|...     ..|+|+++++|.
T Consensus        97 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~  152 (153)
T 3b7y_A           97 RLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL  152 (153)
T ss_dssp             SSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred             CCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence            88 89999999999999876443      2599999753     369999999986

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.75  E-value=1.2e-17  Score=152.62  Aligned_cols=113  Identities=19%  Similarity=0.392  Sum_probs=98.4

Q ss_pred             CcEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEECCEE-Eeeecc-CCCCCeeeeEEEEEeeCCceEEEEEE
Q 005736          487 GRKINVTVVEGKDLMPKDKSGK-----------CDPYVKLQYGKIV-QRTRTA-HSPNHVWNQKFELDEIGGGECLMVKC  553 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~-----------~dpyv~v~l~~~~-~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V  553 (680)
                      .+.|+|+|++|++|++.+..+.           +||||++.+++.. .+|+++ +|+||.|||+|.|.+.+. ..|.|+|
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V   83 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEE
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEEE
Confidence            3689999999999998774333           9999999997654 699999 999999999999998765 8899999


Q ss_pred             EEecCC-CCceeEEEEEEcccccCC--CeeeEEEeCCCCCCeEEEEEEEEEE
Q 005736          554 YNEEIF-GDENMGSARVNLEGLVEG--SVRDIWVPLEKVNTGELRLQIEATR  602 (680)
Q Consensus       554 ~d~~~~-~d~~iG~~~i~L~~l~~~--~~~~~w~~L~~~~~G~i~l~l~~~~  602 (680)
                      ||++.. +|++||++.++|.++..+  ...+.|++|++  +|+|+++++|.+
T Consensus        84 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~i~l~l~~~~  133 (136)
T 1gmi_A           84 FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSG  133 (136)
T ss_dssp             EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEE
T ss_pred             EeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--CeEEEEEEEEEe
Confidence            999987 899999999999998864  34589999986  799999999974

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.73  E-value=9.3e-18  Score=156.24  Aligned_cols=125  Identities=15%  Similarity=0.282  Sum_probs=96.3

Q ss_pred             cCeEEEEEEEecCCCCCCCCCCC--CcccccccCCCCccccccCCCCCCeEEEEEEccee-eeecc-CCCCCCccceeEE
Q 005736          293 VGGIVYVRVISASKLSRSSLRGS--PSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELT-RRTDA-RPGSDPRWDSMFN  368 (680)
Q Consensus       293 ~~G~L~V~v~~a~~L~~~d~~g~--~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~-~~T~v-~~t~nP~Wne~f~  368 (680)
                      ..|.|+|+|++|++|+++|..+.  .-+ |..+             .+||||++.++++. .+|++ ++|+||+|||+|.
T Consensus        27 ~~g~L~V~VieA~~L~~~D~~~~~~~f~-~~~g-------------~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~   92 (157)
T 2fk9_A           27 FNGYLRVRIGEAVGLQPTRWSLRHSLFK-KGHQ-------------LLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFC   92 (157)
T ss_dssp             EEEEEEEEEEEEECCCCCHHHHHTTTSS-SSCC-------------CCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEE
T ss_pred             CccEEEEEEEEEECCCCccccccccccc-cCCC-------------CCCeEEEEEECCEeeEEeeecCCCCCCccCcEEE
Confidence            35999999999999999884210  000 0011             24999999999765 68988 7899999999999


Q ss_pred             EEEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEE
Q 005736          369 MVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELT  448 (680)
Q Consensus       369 ~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~  448 (680)
                      |.+.+ .+.|.|+|||+|.. ++|++||++.|+|.++..+.                  ..+...+.|++|+.  .|+|+
T Consensus        93 f~v~~-~~~L~~~V~D~d~~-~~dd~iG~~~i~l~~l~~~~------------------~~~~~~~~W~~L~~--~G~i~  150 (157)
T 2fk9_A           93 ANVTD-GGHLELAVFHETPL-GYDHFVANCTLQFQELLRTT------------------GASDTFEGWVDLEP--EGKVF  150 (157)
T ss_dssp             EEEEE-ECEEEEEEEECCSS-SSCEEEEEEEEEHHHHHHHH------------------TTCSEEEEEEECBS--SCEEE
T ss_pred             EEcCC-CCEEEEEEEECCCC-CCCCEEEEEEEEHHHhhccc------------------CCCCcccEEEECCC--CcEEE
Confidence            99976 36899999999986 58999999999999985320                  01246788999975  69999


Q ss_pred             EEEEE
Q 005736          449 VRLVL  453 (680)
Q Consensus       449 ~~l~l  453 (680)
                      +++.+
T Consensus       151 l~l~~  155 (157)
T 2fk9_A          151 VVITL  155 (157)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88765

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.73  E-value=5e-17  Score=155.46  Aligned_cols=119  Identities=25%  Similarity=0.361  Sum_probs=97.2

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecC
Q 005736          486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEI  558 (680)
Q Consensus       486 ~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~------~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~  558 (680)
                      ..+.|+|+|++|++|+.++..+.+||||++++++      ..++|+++ ++.||.|||+|.|.+......|.|+|||++.
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~   85 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENR   85 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC-
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCC
Confidence            3569999999999999999889999999999954      68899999 9999999999999998777899999999998


Q ss_pred             C-CCceeEEEEEEcccccCCCee-e-----EEEeCCCC-----CCeEEEEEEEEEEec
Q 005736          559 F-GDENMGSARVNLEGLVEGSVR-D-----IWVPLEKV-----NTGELRLQIEATRVD  604 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~~~~-~-----~w~~L~~~-----~~G~i~l~l~~~~~~  604 (680)
                      . +|++||++.++|.++...... +     .||+|...     ..|+|++++.|.+..
T Consensus        86 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~~  143 (176)
T 3m7f_B           86 LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPKN  143 (176)
T ss_dssp             ---CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC--
T ss_pred             CCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeCC
Confidence            8 899999999999998865433 2     89999853     369999999999763

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.72  E-value=4.5e-17  Score=148.23  Aligned_cols=116  Identities=16%  Similarity=0.304  Sum_probs=98.0

Q ss_pred             cCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEE
Q 005736          291 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNM  369 (680)
Q Consensus       291 ~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~  369 (680)
                      ....|.|+|+|++|++|++.|..|.+                      ||||++.++++..+|++ ++++||+|||+|.|
T Consensus         9 ~~~~~~L~v~v~~a~~L~~~d~~g~~----------------------dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f   66 (133)
T 2ep6_A            9 VKDVGILQVKVLKAADLLAADFSGKS----------------------DPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF   66 (133)
T ss_dssp             CCCSEEEEEEEEEEESCCCSSSSSCC----------------------CEEEEEEETTEEEECCCCSSCSSCCCCEEEEE
T ss_pred             cCCceEEEEEEEeeECCCCCCCCCCc----------------------CeEEEEEECCEEEEeeeecCCCCCccccEEEE
Confidence            34569999999999999999876653                      99999999999999998 78999999999999


Q ss_pred             EEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCC-----Cce
Q 005736          370 VLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEG-----VNS  444 (680)
Q Consensus       370 ~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~-----~~~  444 (680)
                      .+.+..+.|.|+|||+|.. ++|++||++.++|.++....                        ..|++|..     ...
T Consensus        67 ~~~~~~~~l~i~V~d~d~~-~~~~~lG~~~i~l~~l~~~~------------------------~~w~~L~~~~~~~~~~  121 (133)
T 2ep6_A           67 PIKDIHDVLEVTVFDEDGD-KPPDFLGKVAIPLLSIRDGQ------------------------PNCYVLKNKDLEQAFK  121 (133)
T ss_dssp             EESCTTCEEEEEEEEEETT-EEEEECCBCEEEGGGCCSSC------------------------CEECCCBCSCTTSCCS
T ss_pred             EecCCCCEEEEEEEECCCC-CCCCeeEEEEEEHHHccCCC------------------------ceEEEeecCCCCCccc
Confidence            9998778899999999986 58999999999999985321                        24666643     246


Q ss_pred             eeEEEEEEE
Q 005736          445 GELTVRLVL  453 (680)
Q Consensus       445 G~l~~~l~l  453 (680)
                      |+|++++.+
T Consensus       122 G~i~l~i~~  130 (133)
T 2ep6_A          122 GVIYLEMDL  130 (133)
T ss_dssp             SEEEEEEEE
T ss_pred             eEEEEEEEE
Confidence            999988754

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.72  E-value=2.8e-17  Score=150.19  Aligned_cols=119  Identities=18%  Similarity=0.305  Sum_probs=100.2

Q ss_pred             cCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-C-CCCCCccceeEEEE
Q 005736          293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-R-PGSDPRWDSMFNMV  370 (680)
Q Consensus       293 ~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~-~t~nP~Wne~f~~~  370 (680)
                      +.|.|+|+|++|++|++.|..|.+                      ||||++.++.+.++|++ + ++.||+|||+|.|.
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~----------------------dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~   65 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNM----------------------DPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT   65 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSS----------------------CCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEE
T ss_pred             CcEEEEEEEEeccCCCCcccCCCc----------------------CceEEEEECCccceeEeccCCCCCCccCcEEEEE
Confidence            459999999999999999876643                      99999999998889998 6 79999999999999


Q ss_pred             EecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccC--CCceeeEE
Q 005736          371 LHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFE--GVNSGELT  448 (680)
Q Consensus       371 v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~--~~~~G~l~  448 (680)
                      +.+....|.|+|||+|.. .+|++||++.++|.++...                     |.....|++|.  +...|+|+
T Consensus        66 v~~~~~~l~~~V~d~~~~-~~d~~lG~~~i~l~~l~~~---------------------~~~~~~w~~L~~~~~~~G~i~  123 (136)
T 1wfj_A           66 VSEGTTELKAKIFDKDVG-TEDDAVGEATIPLEPVFVE---------------------GSIPPTAYNVVKDEEYKGEIW  123 (136)
T ss_dssp             EESSCCEEEEEECCSSSC-TTTCCSEEEEEESHHHHHH---------------------SEEEEEEEEEEETTEEEEEEE
T ss_pred             ECCCCCEEEEEEEECCCC-CCCceEEEEEEEHHHhccC---------------------CCCCcEEEEeecCCccCEEEE
Confidence            998778899999999986 5899999999999998421                     22446688774  33479999


Q ss_pred             EEEEEee
Q 005736          449 VRLVLKE  455 (680)
Q Consensus       449 ~~l~l~~  455 (680)
                      +++.+.+
T Consensus       124 l~l~~~p  130 (136)
T 1wfj_A          124 VALSFKP  130 (136)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9887765

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.72  E-value=3.9e-17  Score=149.32  Aligned_cols=126  Identities=13%  Similarity=0.287  Sum_probs=97.7

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCC-cccccccCCCCccccccCCCCCCeEEEEEEccee-eeecc-CCCCCCccceeEEEE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSP-SRRQQNYSADSSLEEHYEDKDLTTFVEIELEELT-RRTDA-RPGSDPRWDSMFNMV  370 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~-~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~-~~T~v-~~t~nP~Wne~f~~~  370 (680)
                      .|.|+|+|++|++|++.|..+.. .|+++.+            ..+||||++.++++. .+|++ ++|+||+|||+|.|.
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~------------~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~   72 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQT------------FLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTD   72 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCC------------CCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEE
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCC------------cCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEE
Confidence            49999999999999998754320 1111100            124999999998764 58887 789999999999999


Q ss_pred             EecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEE
Q 005736          371 LHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVR  450 (680)
Q Consensus       371 v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~  450 (680)
                      +.+. +.|.|+|||+|.. .+|++||++.+++.++..+.                    +...+.|++++.  .|+++++
T Consensus        73 v~~~-~~L~~~V~d~d~~-~~dd~iG~~~i~l~~l~~~~--------------------~~~~~~w~~L~~--~G~i~l~  128 (136)
T 1gmi_A           73 VCNG-RKIELAVFHDAPI-GYDDFVANCTIQFEELLQNG--------------------SRHFEDWIDLEP--EGKVYVI  128 (136)
T ss_dssp             EEEE-CEEEEEEEECCSS-SSCEEEEEEEEEHHHHTSTT--------------------CSEEEEEEECBS--SCEEEEE
T ss_pred             ecCC-CEEEEEEEeCCCC-CCCCEEEEEEEEHHHhcccC--------------------CCCccEEEEcCC--CeEEEEE
Confidence            9876 7899999999986 58999999999999986432                    124578998864  6999998


Q ss_pred             EEEee
Q 005736          451 LVLKE  455 (680)
Q Consensus       451 l~l~~  455 (680)
                      +.+..
T Consensus       129 l~~~~  133 (136)
T 1gmi_A          129 IDLSG  133 (136)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            87653

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.71  E-value=1.6e-16  Score=147.34  Aligned_cols=115  Identities=15%  Similarity=0.351  Sum_probs=97.8

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEe
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLH  372 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~  372 (680)
                      .|.|+|+|++|++|++.|..|.+                      ||||++.++++.++|++ ++++||.|||+|.|.+.
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~----------------------dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~   73 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSS----------------------DPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECH   73 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCC----------------------CEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEEC
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCc----------------------CeEEEEEECCEEEECCccCCCCCCCcccEEEEEec
Confidence            49999999999999999876653                      99999999999999998 78999999999999998


Q ss_pred             cCCCeEEEEEEEeCCC----------CCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC
Q 005736          373 EETGTVRFNLYECIPG----------HVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV  442 (680)
Q Consensus       373 ~~~~~l~l~v~d~d~~----------~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~  442 (680)
                      ...+.|.|+|||+|..          ..+|++||++.++|.++..                        ..+.|++|...
T Consensus        74 ~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~------------------------~~~~w~~L~~~  129 (148)
T 3kwu_A           74 NSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSG------------------------EMDVWYNLDKR  129 (148)
T ss_dssp             STTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCCS------------------------EEEEEEECBCS
T ss_pred             CCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCcC------------------------CCCEEEEcccC
Confidence            8888999999999873          1489999999999999831                        34568887632


Q ss_pred             -----ceeeEEEEEEEe
Q 005736          443 -----NSGELTVRLVLK  454 (680)
Q Consensus       443 -----~~G~l~~~l~l~  454 (680)
                           ..|+|++++.+.
T Consensus       130 ~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A          130 TDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             STTCCCCCEEEEEEEEE
T ss_pred             CCCCCCceEEEEEEEEE
Confidence                 359999888653

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.70  E-value=1.3e-16  Score=145.31  Aligned_cols=104  Identities=16%  Similarity=0.213  Sum_probs=90.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEE-eeC---CceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~-v~~---~~~~L~i~V~d~~  557 (680)
                      +.|.|+|++|+||+. +..+.+||||++++     +...++|+++ +++||.|||+|.|. +..   ....|.|+|||++
T Consensus        20 ~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d   98 (134)
T 2b3r_A           20 GTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE   98 (134)
T ss_dssp             TEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECC
T ss_pred             CEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECC
Confidence            589999999999987 66789999999999     3578999999 99999999999999 763   3579999999999


Q ss_pred             CC-CCceeEEEEEEcccccCCCeeeEEEeCCCCCCe
Q 005736          558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTG  592 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G  592 (680)
                      .. ++++||++.++|.++..+.....||+|.+...|
T Consensus        99 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~g  134 (134)
T 2b3r_A           99 SLRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL  134 (134)
T ss_dssp             SSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC----
T ss_pred             CCCCCcEEEEEEEEhhhccCCCCcceeEECCCccCC
Confidence            88 889999999999999887788999999876543

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.70  E-value=2e-16  Score=143.70  Aligned_cols=112  Identities=21%  Similarity=0.282  Sum_probs=96.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--CEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-C---
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G---  560 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~--~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~---  560 (680)
                      ..|+|+|++|++|+..+..+.+||||+++++  ++.++|+++ +++||.|||+|.|.+.+.. .|.|+|||++.. +   
T Consensus         5 ~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~~   83 (132)
T 3pyc_A            5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQG   83 (132)
T ss_dssp             EEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSSTT
T ss_pred             EEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCCC
Confidence            3799999999999999989999999999995  489999999 9999999999999998654 499999999987 4   


Q ss_pred             CceeEEEEEEccccc-CCCeeeEEEeCCCC-------CCeEEEEEEEE
Q 005736          561 DENMGSARVNLEGLV-EGSVRDIWVPLEKV-------NTGELRLQIEA  600 (680)
Q Consensus       561 d~~iG~~~i~L~~l~-~~~~~~~w~~L~~~-------~~G~i~l~l~~  600 (680)
                      |++||++.+++.++. ......+|++|...       ..|+|++++++
T Consensus        84 d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           84 AGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             TTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence            799999999999884 34445688999764       26999998865

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=2.5e-16  Score=144.83  Aligned_cols=103  Identities=21%  Similarity=0.419  Sum_probs=92.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEEecCC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d~~~~  559 (680)
                      +.|.|+|++|++|+..+..+.+||||++++   +.+.++|+++ ++.||.|||+|.|.+..    ....|.|+|||++..
T Consensus        26 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~  105 (141)
T 2d8k_A           26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRF  105 (141)
T ss_dssp             CCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSS
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCC
Confidence            489999999999999998899999999999   3478999999 99999999999998533    357899999999988


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  590 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  590 (680)
                       ++++||++.++|.++..+.....|++|.+..
T Consensus       106 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  137 (141)
T 2d8k_A          106 SRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG  137 (141)
T ss_dssp             SSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred             CCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence             8999999999999998888889999998754

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.70  E-value=2.2e-16  Score=147.13  Aligned_cols=102  Identities=25%  Similarity=0.455  Sum_probs=92.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~-  559 (680)
                      +.|.|+|++|+||+..+..+.+||||++++   +++.++|+++ ++.||.|||+|.|.+..   ....|.|+|||++.. 
T Consensus        42 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~  121 (152)
T 1rsy_A           42 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS  121 (152)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS
T ss_pred             CEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCC
Confidence            489999999999999998899999999999   4578899999 99999999999998864   357899999999988 


Q ss_pred             CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736          560 GDENMGSARVNLEGLVEGSVRDIWVPLEKV  589 (680)
Q Consensus       560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  589 (680)
                      ++++||++.++|.++..+...+.||+|.+.
T Consensus       122 ~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          122 KHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             CCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            899999999999999887788999999863

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.69  E-value=1.9e-16  Score=147.81  Aligned_cols=105  Identities=24%  Similarity=0.411  Sum_probs=91.3

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEEee--CCceEEEEEEEEecC
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEI--GGGECLMVKCYNEEI  558 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~v~--~~~~~L~i~V~d~~~  558 (680)
                      .+.|.|+|++|++|+..+ .+.+||||++++     ....++|+++ ++.||.|||+|.|.+.  +....|.|+|||++.
T Consensus        26 ~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  104 (153)
T 3fbk_A           26 DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRAS  104 (153)
T ss_dssp             SSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCC
Confidence            358999999999999988 689999999999     3467999999 9999999999999984  344569999999998


Q ss_pred             C-C-CceeEEEEEEcccccC-CCeeeEEEeCCCCCCe
Q 005736          559 F-G-DENMGSARVNLEGLVE-GSVRDIWVPLEKVNTG  592 (680)
Q Consensus       559 ~-~-d~~iG~~~i~L~~l~~-~~~~~~w~~L~~~~~G  592 (680)
                      . + |++||++.++|.++.. +.....||+|.+...|
T Consensus       105 ~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g  141 (153)
T 3fbk_A          105 QSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG  141 (153)
T ss_dssp             SGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred             CCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence            7 5 8999999999999985 6778899999986654

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.69  E-value=1.3e-16  Score=143.59  Aligned_cols=112  Identities=18%  Similarity=0.310  Sum_probs=94.1

Q ss_pred             CeEEEEEEEecCCCCCC---CCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc---eeeeecc-CCCCCCcccee
Q 005736          294 GGIVYVRVISASKLSRS---SLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE---LTRRTDA-RPGSDPRWDSM  366 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~---d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~---~~~~T~v-~~t~nP~Wne~  366 (680)
                      .|.|+|+|++|++|+++   |..|.                      +||||++.++.   ..++|++ ++++||+|||+
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~----------------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~   59 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDT----------------------PDPYVELFISTTPDSRKRTRHFNNDINPVWNET   59 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCC----------------------CCEEEEEECTTSTTCCEECCCCTTCSSCEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCC----------------------CCCEEEEEEccCCCceEEccccCCCCCCcccce
Confidence            38999999999999984   44443                      39999999984   7889998 78999999999


Q ss_pred             EEEEEecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCcee
Q 005736          367 FNMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSG  445 (680)
Q Consensus       367 f~~~v~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G  445 (680)
                      |.|.+... ...|.|+|||+|..  +|++||++.++|.++..                      |...+.|++|.+...|
T Consensus        60 f~f~v~~~~~~~l~i~V~d~d~~--~~~~iG~~~i~l~~l~~----------------------~~~~~~~~~L~~~~~g  115 (126)
T 1rlw_A           60 FEFILDPNQENVLEITLMDANYV--MDETLGTATFTVSSMKV----------------------GEKKEVPFIFNQVTEM  115 (126)
T ss_dssp             EEEEECTTSCCEEEEEEEECCSS--CCEEEEEEEEEGGGSCT----------------------TCEEEEEEEETTTEEE
T ss_pred             EEEEecCCCCCEEEEEEEECCCC--CCceeEEEEEEHHHccC----------------------CCcEEEEEEcCCCceE
Confidence            99999654 67899999999975  69999999999999853                      3466789999887777


Q ss_pred             eEEEEE
Q 005736          446 ELTVRL  451 (680)
Q Consensus       446 ~l~~~l  451 (680)
                      ++++++
T Consensus       116 ~i~~~l  121 (126)
T 1rlw_A          116 VLEMSL  121 (126)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777665

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=2.2e-16  Score=144.90  Aligned_cols=117  Identities=14%  Similarity=0.274  Sum_probs=95.8

Q ss_pred             cCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736          293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       293 ~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      ..|.|.|+|++|++|+..|. |.+                      ||||++.++++.++|++ ++++||+|||+|.|.+
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~----------------------dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v   61 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKP----------------------DPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDL   61 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCC----------------------CEEEEEECSSCEEECCCCCSCSSCEEEEEEEEEC
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCC----------------------CeEEEEEECCEeEEeeeecCCCCCccCcEEEEEe
Confidence            45999999999999999987 543                      99999999999999998 7899999999999998


Q ss_pred             ecC----CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeec---cCCC--
Q 005736          372 HEE----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVP---FEGV--  442 (680)
Q Consensus       372 ~~~----~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---l~~~--  442 (680)
                      ...    ...|.|+|||+|.. .+|++||++.++|.++..+.                      ..+.|++   +.+.  
T Consensus        62 ~~~~~~~~~~l~i~V~d~d~~-~~~~~lG~~~i~l~~l~~~~----------------------~~~~w~~l~~l~~~~~  118 (140)
T 2dmh_A           62 RGIPLDFSSSLGIIVKDFETI-GQNKLIGTATVALKDLTGDQ----------------------SRSLPYKLISLLNEKG  118 (140)
T ss_dssp             SSCCCCTTCEEEEEEEETTCS-SSCCCCEEEEEEGGGTCSSS----------------------CEEEEEEEEEEECTTC
T ss_pred             cccccCCCCEEEEEEEECCCC-CCCceEEEEEEEHHHhccCC----------------------CceeEEeeeeccCCCC
Confidence            752    46899999999986 58999999999999986442                      2344554   4332  


Q ss_pred             --ceeeEEEEEEEee
Q 005736          443 --NSGELTVRLVLKE  455 (680)
Q Consensus       443 --~~G~l~~~l~l~~  455 (680)
                        ..|+|++++.+.+
T Consensus       119 ~~~~G~l~l~~~~~p  133 (140)
T 2dmh_A          119 QDTGATIDLVIGYDP  133 (140)
T ss_dssp             CEEEEEEEEEEEECC
T ss_pred             CCCCCEEEEEEEEEC
Confidence              3589998887643

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.69  E-value=2e-16  Score=145.86  Aligned_cols=102  Identities=25%  Similarity=0.435  Sum_probs=92.9

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF  559 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~  559 (680)
                      .+.|.|+|++|++|+..+..+.+||||++++   +.+.++|+++ ++.||.|||+|.|.+...   ...|.|+|||++..
T Consensus        33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~  112 (143)
T 3f04_A           33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  112 (143)
T ss_dssp             TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCC
Confidence            3589999999999999888889999999999   5578999999 999999999999998642   47999999999988


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                       +|++||++.++|.++..+.....|++|+.
T Consensus       113 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          113 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence             89999999999999988888899999975

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.69  E-value=3e-16  Score=141.91  Aligned_cols=99  Identities=24%  Similarity=0.443  Sum_probs=85.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEEeeC----CceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~L~i~V~d~~  557 (680)
                      +.|.|+|++|+||+..+..+.+||||++++     +...++|+++ ++.||.|||+|.|.+..    ....|.|+|||++
T Consensus        18 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d   97 (129)
T 2bwq_A           18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA   97 (129)
T ss_dssp             TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECC
Confidence            589999999999999998899999999999     4589999999 99999999999999532    3579999999999


Q ss_pred             CC-C--CceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          558 IF-G--DENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       558 ~~-~--d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      .. +  +++||++.++|.++.... .+.||+|+
T Consensus        98 ~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           98 RVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             ------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             cCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            88 5  899999999999987654 78999985

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.68  E-value=2e-16  Score=145.29  Aligned_cols=104  Identities=24%  Similarity=0.433  Sum_probs=91.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEEe-eC---CceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDE-IG---GGECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~v-~~---~~~~L~i~V~d~~  557 (680)
                      +.|.|+|++|++|+.++..+.+||||++++     +.+.++|+++ ++.||.|||+|.|.+ ..   ....|.|+|||++
T Consensus        21 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  100 (141)
T 1v27_A           21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA  100 (141)
T ss_dssp             TEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBC
T ss_pred             CEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECC
Confidence            489999999999999998899999999999     4578999999 999999999999995 32   2579999999999


Q ss_pred             CC-C--CceeEEEEEEcccccCCCeeeEEEeCCCCCCe
Q 005736          558 IF-G--DENMGSARVNLEGLVEGSVRDIWVPLEKVNTG  592 (680)
Q Consensus       558 ~~-~--d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G  592 (680)
                      .. +  +++||++.++|.++.... ...||+|.+...|
T Consensus       101 ~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g  137 (141)
T 1v27_A          101 RVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSG  137 (141)
T ss_dssp             SSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSC
T ss_pred             CCcCCCCceEEEEEEEccccCCCC-CCceEECcccccC
Confidence            88 5  899999999999987654 7899999986655

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.68  E-value=1.8e-16  Score=150.75  Aligned_cols=117  Identities=15%  Similarity=0.245  Sum_probs=98.9

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCcee
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM  564 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~i  564 (680)
                      .+.|.|+|++|++|+..+..+.+||||+++++++.++|+++ +++||.|||+|.|.+. +...|.|+|||++.. +|++|
T Consensus        35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~l  113 (173)
T 2nq3_A           35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLL  113 (173)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEE
T ss_pred             ceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCceE
Confidence            45899999999999844434559999999998899999999 9999999999999985 588999999999988 89999


Q ss_pred             EEEEEEcccccCCC-----eeeEEEeCCCC-----CCeEEEEEEEEEEec
Q 005736          565 GSARVNLEGLVEGS-----VRDIWVPLEKV-----NTGELRLQIEATRVD  604 (680)
Q Consensus       565 G~~~i~L~~l~~~~-----~~~~w~~L~~~-----~~G~i~l~l~~~~~~  604 (680)
                      |++.++|.++....     ....|++|...     ..|+|.+++.|.+++
T Consensus       114 G~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~~  163 (173)
T 2nq3_A          114 GTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLE  163 (173)
T ss_dssp             EEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEECC
T ss_pred             EEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeecc
Confidence            99999999986421     23679999764     369999999998663

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.68  E-value=2e-16  Score=146.82  Aligned_cols=104  Identities=17%  Similarity=0.249  Sum_probs=91.6

Q ss_pred             CcEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEe
Q 005736          487 GRKINVTVVEGKDLMPKD-KSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNE  556 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~-~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~  556 (680)
                      .+.|.|+|++|+||+..+ ..+.+||||++++.     ...++|+++ ++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~  101 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH  101 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence            358999999999999887 57899999999994     358999999 999999999999998763   55899999999


Q ss_pred             cCC-CCceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736          557 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  590 (680)
Q Consensus       557 ~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  590 (680)
                      +.. ++++||++.++|.++..+.....||+|.++.
T Consensus       102 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A          102 GRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             CGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             CCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            988 8999999999999998776778999998753

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.67  E-value=2.2e-16  Score=147.34  Aligned_cols=100  Identities=17%  Similarity=0.213  Sum_probs=89.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~------~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~  557 (680)
                      +.|.|+|++|+||++++..+.+||||++++..      .+++|+++ +|+||+|||+|.|.+...   ...|.|+|||++
T Consensus        43 ~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d  122 (155)
T 2z0u_A           43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTD  122 (155)
T ss_dssp             TEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEEC
T ss_pred             CEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECC
Confidence            48999999999999999899999999999943      37999999 999999999999998752   568999999999


Q ss_pred             CC-CCceeEEEEEEcccccC-CCeeeEEEeCC
Q 005736          558 IF-GDENMGSARVNLEGLVE-GSVRDIWVPLE  587 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~-~~~~~~w~~L~  587 (680)
                      .. ++++||++.++|+++.. +.....||+|.
T Consensus       123 ~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          123 RSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             TTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             CCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            88 89999999999999963 66778999985

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.67  E-value=6.1e-16  Score=144.30  Aligned_cols=123  Identities=16%  Similarity=0.298  Sum_probs=92.4

Q ss_pred             CcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc------eeeeecc-CCCCCCccc
Q 005736          292 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE------LTRRTDA-RPGSDPRWD  364 (680)
Q Consensus       292 ~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~------~~~~T~v-~~t~nP~Wn  364 (680)
                      ...|.|+|+|++|++|++.|..|.+                      ||||++.++.      ..++|++ ++++||+||
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~----------------------dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wn   74 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGAS----------------------DPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWN   74 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------C----------------------CEEEEEEEEETTTEEEEEEECCCCSSCSSCCCC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCC----------------------CcEEEEEEECCCCccceeeeCccccCCCCCCCC
Confidence            3459999999999999998866643                      9999999973      5778998 789999999


Q ss_pred             eeEEEEEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC--
Q 005736          365 SMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV--  442 (680)
Q Consensus       365 e~f~~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~--  442 (680)
                      |+|.|.+......|.|+|||+|.. ++|++||++.++|.++......              .  .......|++|...  
T Consensus        75 e~f~f~v~~~~~~l~~~V~d~d~~-~~d~~iG~~~i~l~~l~~~~~~--------------~--~~~~~~~w~~L~~~~~  137 (153)
T 3b7y_A           75 EEILFRVHPQQHRLLFEVFDENRL-TRDDFLGQVDVPLYPLPTENPR--------------L--ERPYTFKDFVLHPRSH  137 (153)
T ss_dssp             EEEEEEECTTTCEEEEEEEECCSS-SCCEEEEEEEEECCSCCBCCTT--------------S--CCCCCCEEEECBCSST
T ss_pred             CEEEEEecCCCCEEEEEEEECCCC-cCCCeeEEEEEEHHHcccCCCc--------------c--cccccccccccccccC
Confidence            999999988778899999999986 5899999999999998644210              0  00112467777542  


Q ss_pred             ---ceeeEEEEEEE
Q 005736          443 ---NSGELTVRLVL  453 (680)
Q Consensus       443 ---~~G~l~~~l~l  453 (680)
                         ..|+|++++.+
T Consensus       138 ~~~~~G~i~l~l~~  151 (153)
T 3b7y_A          138 KSRVKGYLRLKMTY  151 (153)
T ss_dssp             TCCCCSEEEEEEEE
T ss_pred             CCCcceEEEEEEEE
Confidence               36999988865

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.66  E-value=2.1e-16  Score=145.44  Aligned_cols=103  Identities=22%  Similarity=0.411  Sum_probs=91.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------EEEeeecc-CCCCCeeeeEEEEE-eeC---CceE
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK--------------IVQRTRTA-HSPNHVWNQKFELD-EIG---GGEC  548 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~--------------~~~~T~~~-~t~nP~wne~f~f~-v~~---~~~~  548 (680)
                      +.|.|+|++|+||+.++..+.+||||+++++.              ..++|+++ ++.||.|||+|.|. +..   ....
T Consensus        18 ~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~   97 (142)
T 1rh8_A           18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT   97 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCE
T ss_pred             CEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCE
Confidence            48999999999999999889999999999954              25789999 99999999999997 542   3678


Q ss_pred             EEEEEEEecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736          549 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  590 (680)
Q Consensus       549 L~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  590 (680)
                      |.|+|||++.. ++++||++.++|.++........||+|.+..
T Consensus        98 l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           98 LEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            99999999988 8999999999999988766778999998754

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.66  E-value=1.5e-16  Score=147.74  Aligned_cols=106  Identities=30%  Similarity=0.454  Sum_probs=93.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeCC--ceEEEEEEEEecCC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~~  559 (680)
                      +.|.|+|++|++|+..+..+.+||||++++.     ...++|+++ ++.||.|||+|.|.+...  ...|.|+|||++..
T Consensus        31 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~  110 (149)
T 1a25_A           31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT  110 (149)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred             CEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCC
Confidence            4899999999999999988999999999994     478999999 999999999999998763  56899999999988


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEE
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGEL  594 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i  594 (680)
                       ++++||++.++|.++..+ ..+.||+|.+...|++
T Consensus       111 ~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g~~  145 (149)
T 1a25_A          111 SRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGEY  145 (149)
T ss_dssp             SCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHTT
T ss_pred             CCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCCcc
Confidence             899999999999998765 4779999987655543

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.66  E-value=1.1e-15  Score=140.68  Aligned_cols=102  Identities=29%  Similarity=0.496  Sum_probs=91.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEE-eeCC---ceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELD-EIGG---GECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~-v~~~---~~~L~i~V~d~~  557 (680)
                      +.|.|+|++|++|+..+..+.+||||++++..     ..++|+++ ++.||.|||+|.|. +...   ...|.|+|||++
T Consensus        29 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  108 (142)
T 2chd_A           29 SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDED  108 (142)
T ss_dssp             TEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEEC
T ss_pred             CEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECC
Confidence            48999999999999999889999999999953     78999999 99999999999998 5432   478999999999


Q ss_pred             CC-CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736          558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  589 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  589 (680)
                      .. ++++||++.++|.++..+.....|++|+..
T Consensus       109 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~p  141 (142)
T 2chd_A          109 KFGHNEFIGETRFSLKKLKANQRKNFNICLERV  141 (142)
T ss_dssp             TTSCEEEEEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred             CCCCCcEEEEEEEEHHHcCCCCccEEEEecccC
Confidence            88 789999999999999988888999999863

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.66  E-value=9.3e-16  Score=146.61  Aligned_cols=124  Identities=15%  Similarity=0.276  Sum_probs=92.3

Q ss_pred             cCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc------eeeeecc-CCCCCCccce
Q 005736          293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE------LTRRTDA-RPGSDPRWDS  365 (680)
Q Consensus       293 ~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~------~~~~T~v-~~t~nP~Wne  365 (680)
                      ..|.|+|+|++|++|++.|..|.+                      ||||++.++.      ..++|++ ++++||+|||
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~----------------------DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne   63 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGAS----------------------DPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNE   63 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCC----------------------CEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEE
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCc----------------------CcEEEEEEECCCCCcccceeCceECCCCCCcccc
Confidence            459999999999999999876653                      9999999985      5789998 7999999999


Q ss_pred             eEEEEEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC---
Q 005736          366 MFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV---  442 (680)
Q Consensus       366 ~f~~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~---  442 (680)
                      +|.|.+......|.|+|||+|.. .+|++||++.++|.++......              .+  ......|++|...   
T Consensus        64 ~f~f~v~~~~~~L~~~V~d~d~~-~~d~~lG~~~i~l~~l~~~~~~--------------~~--~~~~~~w~~L~~~~~~  126 (176)
T 3m7f_B           64 EILFRVLPQRHRILFEVFDENRL-TRDDFLGQVDVPLYPLPTENPR--------------ME--RPYTFKDFVLHPRSHK  126 (176)
T ss_dssp             EEEEEECTTTCEEEEEEEECC-----CEEEEEEEEESCSCCBC----------------------CCCCEEEECBCSSTT
T ss_pred             eEEEEEcCCCCEEEEEEEECCCC-CCCcEEEEEEEEHHHccccCCc--------------cc--ccccccEEEccccCCC
Confidence            99999987778899999999986 5899999999999998643210              00  0001157777542   


Q ss_pred             --ceeeEEEEEEEee
Q 005736          443 --NSGELTVRLVLKE  455 (680)
Q Consensus       443 --~~G~l~~~l~l~~  455 (680)
                        ..|+|++++.+.+
T Consensus       127 ~~~~G~l~l~l~~~p  141 (176)
T 3m7f_B          127 SRVKGYLRLKMTYLP  141 (176)
T ss_dssp             CCCCSEEEEEEEECC
T ss_pred             CccCEEEEEEEEEEe
Confidence              2699999987654

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.65  E-value=1.1e-15  Score=139.90  Aligned_cols=101  Identities=19%  Similarity=0.273  Sum_probs=88.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C-EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---K-IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~---~-~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~  559 (680)
                      +.|.|+|++|++   ++..+.+||||++++.   + ..++|+++ +++||.|||+|.|.+...   ...|.|+|||++..
T Consensus        26 ~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~  102 (138)
T 1wfm_A           26 AELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF  102 (138)
T ss_dssp             TEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSS
T ss_pred             CEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCC
Confidence            489999999994   5677899999999992   2 46899999 999999999999998753   56899999999988


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCCCCC
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNT  591 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~  591 (680)
                       +|++||++.++|.++..+.....|++|.+..+
T Consensus       103 ~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  135 (138)
T 1wfm_A          103 SRHSVAGELRLGLDGTSVPLGAAQWGELKTSGP  135 (138)
T ss_dssp             CTTSCSEEEEEESSSSSSCTTCCEEEECCCCSC
T ss_pred             CCCcEEEEEEEEcccccCcccccceeeCcCCCc
Confidence             89999999999999976667789999987543

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=9.4e-16  Score=142.00  Aligned_cols=104  Identities=19%  Similarity=0.272  Sum_probs=89.6

Q ss_pred             CcEEEEEEEEeecCCCC-CC------CCCCCcEEEEEEC---CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEE
Q 005736          487 GRKINVTVVEGKDLMPK-DK------SGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVK  552 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~-~~------~~~~dpyv~v~l~---~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~  552 (680)
                      .+.|.|+|++|+||+.. +.      .+.+||||++++.   ++.++|+++ ++.||.|||+|.|.+...   ...|.|+
T Consensus        25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~  104 (147)
T 2enp_A           25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLT  104 (147)
T ss_dssp             TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEE
T ss_pred             CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEE
Confidence            35899999999999874 33      3589999999994   468899999 999999999999998642   4689999


Q ss_pred             EEEecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736          553 CYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  590 (680)
Q Consensus       553 V~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  590 (680)
                      |||++.. ++++||++.++|.++........|++|++..
T Consensus       105 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  143 (147)
T 2enp_A          105 VVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSG  143 (147)
T ss_dssp             EECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCC
T ss_pred             EEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecCC
Confidence            9999988 8899999999999998777778999998753

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.64  E-value=3.3e-15  Score=136.57  Aligned_cols=101  Identities=19%  Similarity=0.338  Sum_probs=86.3

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEec
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  557 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~  557 (680)
                      .+.|.|+|++|++|+..+..+.+||||++++..     ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~   94 (138)
T 3n5a_A           15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD   94 (138)
T ss_dssp             TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECC
T ss_pred             CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECC
Confidence            358999999999999999889999999999942     58899999 999999999999998754   378999999999


Q ss_pred             CC-CCceeEEEEEEccccc------------CCCeeeEEEeCC
Q 005736          558 IF-GDENMGSARVNLEGLV------------EGSVRDIWVPLE  587 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~------------~~~~~~~w~~L~  587 (680)
                      .. +|++||++.++|.++.            .+....+|++|.
T Consensus        95 ~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~  137 (138)
T 3n5a_A           95 KLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLK  137 (138)
T ss_dssp             SSSCCEEEEEEEESSSSCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             CCCCCcEEEEEEEccccCChHHHHHHHHHhCCCCeEEEEeecC
Confidence            88 8999999999998643            233556777765

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.63  E-value=5.1e-15  Score=135.47  Aligned_cols=102  Identities=18%  Similarity=0.208  Sum_probs=88.9

Q ss_pred             cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CEEEeeecc-CCCCCeeeeEEEEE-eeC---CceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~-~~~dpyv~v~l~---~~~~~T~~~-~t~nP~wne~f~f~-v~~---~~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|+||+.++.. +.+||||++++.   .+.++|+++ ++.||.|||+|.|. +..   ....|.|+|||++.
T Consensus        22 ~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~  101 (138)
T 1ugk_A           22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR  101 (138)
T ss_dssp             TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCC
Confidence            4899999999999999874 889999999994   489999999 99999999999996 654   24689999999998


Q ss_pred             C-CCceeEEEEEEcccccCCC-eeeEEEeCCCC
Q 005736          559 F-GDENMGSARVNLEGLVEGS-VRDIWVPLEKV  589 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~~-~~~~w~~L~~~  589 (680)
                      . +|++||++.++|.++..+. ....|++|...
T Consensus       102 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A          102 FSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             CCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            8 8999999999999998644 44678999864

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=139.71  Aligned_cols=102  Identities=23%  Similarity=0.284  Sum_probs=89.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|+||+.++..+ +||||++++.     ...++|+++ ++.||.|||+|.|.+..   ....|.|+|||++.
T Consensus        24 ~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  102 (142)
T 2dmg_A           24 NKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG  102 (142)
T ss_dssp             TEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC
T ss_pred             CEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC
Confidence            48999999999999999888 9999999992     268899999 99999999999999864   24589999999997


Q ss_pred             C-C--CceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736          559 F-G--DENMGSARVNLEGLVEGSVRDIWVPLEKVN  590 (680)
Q Consensus       559 ~-~--d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  590 (680)
                      . .  +++||++.++|.++..+.....||+|.+..
T Consensus       103 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~  137 (142)
T 2dmg_A          103 FLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS  137 (142)
T ss_dssp             SSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred             ccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence            6 3  469999999999988766788999998753

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.63  E-value=1e-15  Score=145.56  Aligned_cols=103  Identities=25%  Similarity=0.308  Sum_probs=91.6

Q ss_pred             cEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC--C---EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEE-EecCC
Q 005736          488 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY-NEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~-~~~~dpyv~v~l~--~---~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~-d~~~~  559 (680)
                      +.|.|+|++|+||+.++. .+.+||||++++.  +   ..++|+++ ++.||.|||+|.|.+......|.|+|| |++..
T Consensus        30 ~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~  109 (171)
T 2q3x_A           30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRM  109 (171)
T ss_dssp             TEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTT
T ss_pred             CEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCC
Confidence            489999999999999885 6899999999993  2   48899999 999999999999998777889999999 99888


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  590 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  590 (680)
                       +|++||++.++|.++..+.....||+|.+..
T Consensus       110 ~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  141 (171)
T 2q3x_A          110 DHKCFMGVAQILLEELDLSSMVIGWYKLFPPS  141 (171)
T ss_dssp             CSSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred             CCCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence             8899999999999998777889999998753

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.63  E-value=2.1e-15  Score=137.33  Aligned_cols=105  Identities=12%  Similarity=0.187  Sum_probs=85.6

Q ss_pred             cCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE-----cceeeeecc-CCCCCCcccee
Q 005736          293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-----EELTRRTDA-RPGSDPRWDSM  366 (680)
Q Consensus       293 ~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~-----~~~~~~T~v-~~t~nP~Wne~  366 (680)
                      ..|.|.|+|++|++|+. +..|.                      +||||++.+     +...++|++ ++++||+|||+
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~----------------------~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~   74 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGAD----------------------PNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEM   74 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCC----------------------CCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCC----------------------CCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccE
Confidence            45999999999999997 54444                      399999999     356789998 79999999999


Q ss_pred             EEEE-Eec---CCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC
Q 005736          367 FNMV-LHE---ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV  442 (680)
Q Consensus       367 f~~~-v~~---~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~  442 (680)
                      |.|. +..   ....|.|+|||+|.. ++|++||++.++|.++..+                      ...+.|++|.+.
T Consensus        75 f~f~~v~~~~l~~~~L~~~V~d~d~~-~~~~~lG~~~i~l~~l~~~----------------------~~~~~W~~L~~~  131 (134)
T 2b3r_A           75 LVYSGYSKETLRQRELQLSVLSAESL-RENFFLGGITLPLKDFNLS----------------------KETVKWYQLTAA  131 (134)
T ss_dssp             EEEESCCHHHHTTCEEEEEEEECCSS-SCCEEEEEEEEEGGGSCTT----------------------SCEEEEEECBC-
T ss_pred             EEECCcCHHHhCcCEEEEEEEECCCC-CCCcEEEEEEEEhhhccCC----------------------CCcceeEECCCc
Confidence            9999 764   246899999999986 5899999999999998642                      245678888765


Q ss_pred             c
Q 005736          443 N  443 (680)
Q Consensus       443 ~  443 (680)
                      .
T Consensus       132 ~  132 (134)
T 2b3r_A          132 T  132 (134)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.62  E-value=7.1e-15  Score=138.01  Aligned_cols=104  Identities=20%  Similarity=0.317  Sum_probs=89.3

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEec
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  557 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~  557 (680)
                      .+.|.|+|++|+||+..+..+.+||||++++.  +   ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d  103 (159)
T 1tjx_A           24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  103 (159)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECC
Confidence            35899999999999999988999999999994  2   57899999 999999999999998753   468999999999


Q ss_pred             CC-CCceeEEEEEEcccc----------c--CCCeeeEEEeCCCCC
Q 005736          558 IF-GDENMGSARVNLEGL----------V--EGSVRDIWVPLEKVN  590 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l----------~--~~~~~~~w~~L~~~~  590 (680)
                      .. ++++||++.+++..+          .  .+....+|++|....
T Consensus       104 ~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~  149 (159)
T 1tjx_A          104 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE  149 (159)
T ss_dssp             SSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred             CCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcc
Confidence            88 899999999999853          2  244668999998643

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.61  E-value=2.9e-15  Score=136.05  Aligned_cols=88  Identities=15%  Similarity=0.344  Sum_probs=77.3

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc--eeeeecc-CCCCCCccceeEEEEE
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE--LTRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~--~~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      ..|+|+|++|++|++.|..|.+                      ||||++.++.  +.++|++ ++++||+|||+|.|.+
T Consensus         5 ~~L~V~v~~a~~L~~~d~~g~s----------------------Dpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v   62 (132)
T 3pyc_A            5 IKIRLTVLCAKNLAKKDFFRLP----------------------DPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV   62 (132)
T ss_dssp             EEEEEEEEEEESCCCCSTTCCC----------------------CEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEE
T ss_pred             EEEEEEEEEeECCCCCCCCCCc----------------------CeEEEEEECCCCceEECCccCCCCCCCccCEEEEEe
Confidence            6899999999999999877654                      9999999974  7889998 7999999999999999


Q ss_pred             ecCCCeEEEEEEEeCCCCCC---CceeEEEEEeccccc
Q 005736          372 HEETGTVRFNLYECIPGHVK---YDYLTSCEVKMKYVA  406 (680)
Q Consensus       372 ~~~~~~l~l~v~d~d~~~~~---d~~lG~~~i~l~~l~  406 (680)
                      .+.. .|.|+|||+|.. ++   |++||++.+++.++.
T Consensus        63 ~~~~-~l~~~v~d~d~~-~~~~~d~~lG~~~i~l~~l~   98 (132)
T 3pyc_A           63 GKTD-SITISVWNHKKI-HKKQGAGFLGCVRLLSNAIS   98 (132)
T ss_dssp             ETTC-CEEEEEEEGGGT-TSSTTTTEEEEEEECHHHHH
T ss_pred             CCCC-EEEEEEEECCCC-CCCCCCCceEEEEEeHHHhh
Confidence            8753 599999999986 34   899999999998873

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.61  E-value=2.1e-15  Score=143.34  Aligned_cols=119  Identities=15%  Similarity=0.248  Sum_probs=91.8

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEe
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLH  372 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~  372 (680)
                      .+.|+|+|++|++|++.+..+.                      +||||++.++++.++|++ ++++||+|||+|.|.+.
T Consensus        35 ~~~L~V~V~~A~~L~~~~~~~~----------------------sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~   92 (173)
T 2nq3_A           35 KSQLQITVISAKLKENKKNWFG----------------------PSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT   92 (173)
T ss_dssp             CEEEEEEEEEEEECCCC--CCC----------------------CCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC
T ss_pred             ceEEEEEEEEeECCCCcccCCC----------------------CCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC
Confidence            4899999999999994432232                      299999999999999998 79999999999999985


Q ss_pred             cCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCC-----ceeeE
Q 005736          373 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV-----NSGEL  447 (680)
Q Consensus       373 ~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~-----~~G~l  447 (680)
                      . .+.|.|+|||+|.. ++|++||++.++|.++......                 .......|++|...     ..|+|
T Consensus        93 ~-~~~L~~~V~D~d~~-~~dd~lG~~~i~l~~l~~~~~~-----------------~~~~~~~~~~L~~~~~~~~~~G~L  153 (173)
T 2nq3_A           93 P-VSKLHFRVWSHQTL-KSDVLLGTAALDIYETLKSNNM-----------------KLEEVVVTLQLGGDKEPTETIGDL  153 (173)
T ss_dssp             T-TCEEEEEEEECCSS-SCCEEEEEEEEEHHHHHHHTTT-----------------EESSEEEEEEEEESSCTTSEEEEE
T ss_pred             C-CCEEEEEEEECCCC-CCCceEEEEEEEHHHhcccCCC-----------------CcceeEEEEECccCCCCCcccEEE
Confidence            4 77899999999986 5899999999999998532110                 00123557776543     36888


Q ss_pred             EEEEEE
Q 005736          448 TVRLVL  453 (680)
Q Consensus       448 ~~~l~l  453 (680)
                      .+.+.+
T Consensus       154 ~v~l~~  159 (173)
T 2nq3_A          154 SICLDG  159 (173)
T ss_dssp             EEEEES
T ss_pred             EEEEee
Confidence            877743

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.61  E-value=1.2e-14  Score=137.45  Aligned_cols=88  Identities=19%  Similarity=0.319  Sum_probs=80.0

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEec
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  557 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~  557 (680)
                      .+.|.|+|++|++|+..+..+.+||||+++++.     ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  115 (166)
T 2cm5_A           36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD  115 (166)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECC
Confidence            348999999999999999889999999999953     78999999 999999999999998752   569999999999


Q ss_pred             CC-CCceeEEEEEEcccc
Q 005736          558 IF-GDENMGSARVNLEGL  574 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l  574 (680)
                      .. ++++||++.++|.++
T Consensus       116 ~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A          116 IGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             SSSCCEEEEEEEEETTCC
T ss_pred             CCCCCcEEEeEEEecccC
Confidence            88 899999999999975

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.61  E-value=2.1e-15  Score=140.44  Aligned_cols=95  Identities=19%  Similarity=0.230  Sum_probs=81.3

Q ss_pred             ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccce
Q 005736          290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWDS  365 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wne  365 (680)
                      +.+..|.|.|+|++|++|++.|..|.+                      ||||++.+.   ...++|++ ++++||+|||
T Consensus        37 y~~~~~~L~V~v~~a~~L~~~d~~g~~----------------------dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne   94 (152)
T 1rsy_A           37 YDFQNNQLLVGIIQAAELPALDMGGTS----------------------DPYVKVFLLPDKKKKFETKVHRKTLNPVFNE   94 (152)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCC----------------------CEEEEEEEETTCCSCEECCCCTTCSSCEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCccCCCCc----------------------CeEEEEEEEcCCCceEeccccCCCCCCcCcc
Confidence            334569999999999999999876643                      999999994   56788998 7899999999


Q ss_pred             eEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          366 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       366 ~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      +|.|.+...   ...|.|+|||+|.. .+|++||++.++|.++..
T Consensus        95 ~f~f~v~~~~l~~~~L~i~V~d~d~~-~~~~~iG~~~i~l~~l~~  138 (152)
T 1rsy_A           95 QFTFKVPYSELGGKTLVMAVYDFDRF-SKHDIIGEFKVPMNTVDF  138 (152)
T ss_dssp             EEEECCCHHHHTTCEEEEEEEECCSS-SCCEEEEEEEEEGGGCCC
T ss_pred             cEEEeecHHHcCCCEEEEEEEECCCC-CCCcEEEEEEEEchhccC
Confidence            999988642   57899999999986 589999999999999853

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.61  E-value=1.1e-15  Score=142.01  Aligned_cols=108  Identities=18%  Similarity=0.312  Sum_probs=90.6

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCccceeE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPRWDSMF  367 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~Wne~f  367 (680)
                      .|.|.|+|++|++|++.|..|.+                      ||||++.+.     ...++|++ ++++||+|||+|
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~----------------------dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f   87 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLS----------------------DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF   87 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCC----------------------CEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCc----------------------CeEEEEEEECCCCCcceEecceeCCCCCCcCCcEE
Confidence            48999999999999999876643                      999999997     46788998 789999999999


Q ss_pred             EEEEecC--CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCcee
Q 005736          368 NMVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSG  445 (680)
Q Consensus       368 ~~~v~~~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G  445 (680)
                      .|.+...  ...|.|+|||+|.. .+|++||++.++|.++...                       ..+.|++|...+.|
T Consensus        88 ~f~v~~~~~~~~L~i~V~d~d~~-~~~~~iG~~~i~l~~l~~~-----------------------~~~~W~~L~~~~~g  143 (149)
T 1a25_A           88 RFQLKESDKDRRLSVEIWDWDLT-SRNDFMGSLSFGISELQKA-----------------------GVDGWFKLLSQEEG  143 (149)
T ss_dssp             EEECCSGGGGCEEEEEEEECCSS-SCCEEEEEEEEEHHHHTTC-----------------------CEEEEEECBCHHHH
T ss_pred             EEEeccccCCCEEEEEEEECCCC-CCCCEEEEEEEEHHHhCcC-----------------------ccCCeEEccCCCCC
Confidence            9998764  45799999999986 5899999999999998632                       24678888776656


Q ss_pred             eE
Q 005736          446 EL  447 (680)
Q Consensus       446 ~l  447 (680)
                      ++
T Consensus       144 ~~  145 (149)
T 1a25_A          144 EY  145 (149)
T ss_dssp             TT
T ss_pred             cc
Confidence            53

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=5.3e-15  Score=135.88  Aligned_cols=95  Identities=16%  Similarity=0.236  Sum_probs=80.5

Q ss_pred             ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccce
Q 005736          290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWDS  365 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wne  365 (680)
                      +....+.|+|+|++|++|++.|..|.+                      ||||++.+.   .+.++|++ ++++||+|||
T Consensus        21 y~~~~~~L~v~v~~a~~L~~~d~~g~~----------------------dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne   78 (141)
T 2d8k_A           21 YNFQESTLTVKIMKAQELPAKDFSGTS----------------------DPFVKIYLLPDKKHKLETKVKRKNLNPHWNE   78 (141)
T ss_dssp             ECSSSCCEEEEEEEEESCCCCSSSSCC----------------------CEEEEEEEESCCSSEEECCCCTTCSSCCCCE
T ss_pred             EeCCCCEEEEEEEEeECCCCCCCCCCC----------------------CcEEEEEEECCCCccEeCceEcCCCCCcccc
Confidence            334569999999999999999876653                      999999994   46788998 7999999999


Q ss_pred             eEEEEEec----CCCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          366 MFNMVLHE----ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       366 ~f~~~v~~----~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      +|.|.+..    ....|.|+|||+|.. .+|++||++.++|.++..
T Consensus        79 ~f~f~~~~~~~~~~~~l~i~V~d~d~~-~~~~~iG~~~i~l~~l~~  123 (141)
T 2d8k_A           79 TFLFEGFPYEKVVQRILYLQVLDYDRF-SRNDPIGEVSIPLNKVDL  123 (141)
T ss_dssp             EEEECSCCHHHHTTSEEEEEEEECCSS-SSCEEEEEEEEETTTSCT
T ss_pred             EEEECccCHHHcccCEEEEEEEECCCC-CCCcEEEEEEEEhhhhcC
Confidence            99998532    256899999999986 589999999999999864

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.59  E-value=3e-15  Score=137.92  Aligned_cols=94  Identities=19%  Similarity=0.254  Sum_probs=81.0

Q ss_pred             cCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE---cceeeeecc-CCCCCCcccee
Q 005736          291 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL---EELTRRTDA-RPGSDPRWDSM  366 (680)
Q Consensus       291 ~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~---~~~~~~T~v-~~t~nP~Wne~  366 (680)
                      ....|.|.|+|++|++|+..|..+.+                      ||||++.+   +...++|++ +++.||+|||+
T Consensus        30 ~~~~~~L~v~v~~a~~L~~~d~~g~~----------------------dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~   87 (143)
T 3f04_A           30 DFQNNQLLVGIIQAAELPALDMGGTS----------------------DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQ   87 (143)
T ss_dssp             ETTTTEEEEEEEEEECCCCBGGGBCC----------------------CEEEEEEEESCCSCCEECCCCCSCSSCEEEEE
T ss_pred             eCCCCEEEEEEEEecCCCCCCCCCCc----------------------CcEEEEEEECCCCccEECccCcCCCCCcCcCe
Confidence            34569999999999999998866543                      99999999   456889998 78999999999


Q ss_pred             EEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          367 FNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       367 f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      |.|.+...   ...|.|+|||+|.. .+|++||++.++|.++..
T Consensus        88 f~f~v~~~~l~~~~L~i~V~d~d~~-~~~~~iG~~~i~l~~l~~  130 (143)
T 3f04_A           88 FTFKVPYSELGGKTLVMAVYDFDRF-SKHDIIGEFKVPMNTVDF  130 (143)
T ss_dssp             EEECCCHHHHTTCEEEEEEEECCSS-SCCEEEEEEEEEGGGCCT
T ss_pred             EEEeecHhhcCCCEEEEEEEeCCCC-CCCceEEEEEEEHHHccC
Confidence            99998743   46899999999986 589999999999999864

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.59  E-value=4.1e-15  Score=138.72  Aligned_cols=113  Identities=13%  Similarity=0.208  Sum_probs=89.2

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~  362 (680)
                      .+....|.|.|+|++|++|++.| .|.                      +||||++.+.     ...++|++ ++++||+
T Consensus        21 ~y~~~~~~L~V~v~~a~~L~~~d-~g~----------------------~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~   77 (153)
T 3fbk_A           21 SIDAQDRVLLLHIIEGKGLISKQ-PGT----------------------CDPYVKISLIPEDSRLRHQKTQTVPDCRDPA   77 (153)
T ss_dssp             EEEESSSEEEEEEEEEESCCCCS-SSC----------------------CCEEEEEEEESCSCCTTCEECCCCTTCSSCE
T ss_pred             EEECCCCEEEEEEEEeeCCCCCC-CCC----------------------CCEEEEEEEEcCCCCccEEeccccCCCCCCc
Confidence            34455699999999999999988 454                      3999999993     35688988 7999999


Q ss_pred             cceeEEEEEe--cCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccC
Q 005736          363 WDSMFNMVLH--EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFE  440 (680)
Q Consensus       363 Wne~f~~~v~--~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~  440 (680)
                      |||+|.|.+.  +....|.|+|||+|..+.+|++||++.++|.++...                     +.....|++|.
T Consensus        78 wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~---------------------~~~~~~W~~L~  136 (153)
T 3fbk_A           78 FHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTP---------------------DKEISGWYYLL  136 (153)
T ss_dssp             EEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC-----------------------CCEEEEEECB
T ss_pred             cccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCC---------------------CCccccEEECC
Confidence            9999999984  445679999999998632399999999999998631                     12456788887


Q ss_pred             CCcee
Q 005736          441 GVNSG  445 (680)
Q Consensus       441 ~~~~G  445 (680)
                      +...|
T Consensus       137 ~~~~g  141 (153)
T 3fbk_A          137 GEHLG  141 (153)
T ss_dssp             CTTGG
T ss_pred             Chhhc
Confidence            65544

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.59  E-value=2.5e-15  Score=140.21  Aligned_cols=94  Identities=12%  Similarity=0.101  Sum_probs=81.4

Q ss_pred             ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc------eeeeecc-CCCCCCc
Q 005736          290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE------LTRRTDA-RPGSDPR  362 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~------~~~~T~v-~~t~nP~  362 (680)
                      +....|.|+|+|++|++|+++|..|.+                      ||||++.+..      ..++|++ ++|+||+
T Consensus        38 y~~~~~~L~V~Vi~a~~L~~~d~~g~s----------------------DPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~   95 (155)
T 2z0u_A           38 YDEKNKQFAILIIQLSNLSALLQQQDQ----------------------KVNIRVAVLPCSESTTCLFRTRPLDASDTLV   95 (155)
T ss_dssp             EETTTTEEEEEEEEEECGGGTCCSCCS----------------------EEEEEEEEESCSCHHHHEEECCCEECCSSEE
T ss_pred             EcCCCCEEEEEEEEccCcCCcccCCCC----------------------CEEEEEEEecCCCCCccceeCCcCCCCCCCc
Confidence            334569999999999999999976654                      9999999964      2689998 7999999


Q ss_pred             cceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      |||+|.|.+...   ...|.|+|||+|.. ++|++||++.++|.++.
T Consensus        96 wnE~F~f~v~~~~l~~~~L~~~V~d~d~~-~~~d~iG~~~i~l~~l~  141 (155)
T 2z0u_A           96 FNEVFWVSMSYPALHQKTLRVDVCTTDRS-HLEECLGGAQISLAEVC  141 (155)
T ss_dssp             EEEEEEEECCHHHHHHCEEEEEEEEECTT-SCEEEEEEEEEECTTSC
T ss_pred             cccEEEEEcCHHHhCcCEEEEEEEECCCC-CCCcEEEEEEEEHHHcc
Confidence            999999998753   46799999999987 69999999999999985

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.58  E-value=2.4e-14  Score=133.48  Aligned_cols=86  Identities=26%  Similarity=0.356  Sum_probs=72.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCE---EEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI---VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~---~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|+||+..+..+.+||||++++  ++.   .++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        30 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~  109 (153)
T 1w15_A           30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER  109 (153)
T ss_dssp             TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCC
Confidence            589999999999999988899999999999  443   7799999 999999999999998764   4789999999998


Q ss_pred             C-CCceeEEEEEEccc
Q 005736          559 F-GDENMGSARVNLEG  573 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~  573 (680)
                      . ++++||++.++|.+
T Consensus       110 ~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          110 GSRNEVIGRLVLGATA  125 (153)
T ss_dssp             TSCCEEEEEEEESTTC
T ss_pred             CCCCcEEEEEEECCCC
Confidence            8 89999999999988

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.58  E-value=4.6e-15  Score=136.21  Aligned_cols=93  Identities=17%  Similarity=0.346  Sum_probs=79.0

Q ss_pred             cCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE-----cceeeeecc-CCCCCCccc
Q 005736          291 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-----EELTRRTDA-RPGSDPRWD  364 (680)
Q Consensus       291 ~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~-----~~~~~~T~v-~~t~nP~Wn  364 (680)
                      ....|.|.|+|++|++|++.|..|.+                      ||||++.+     +...++|++ ++++||+||
T Consensus        17 ~~~~~~L~v~v~~a~~L~~~d~~g~~----------------------dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wn   74 (141)
T 1v27_A           17 DKVGHQLIVTILGAKDLPSREDGRPR----------------------NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWN   74 (141)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSSSCCC----------------------CEEEECCCSSCCSSSSCCBCCCCSSCSSCCCC
T ss_pred             eCCCCEEEEEEEEccCCCCcCCCCCC----------------------CCEEEEEEecCCCCCcceeCccccCCCCCccc
Confidence            34459999999999999999876653                      99999998     356789998 789999999


Q ss_pred             eeEEEEE-ec---CCCeEEEEEEEeCCCCCC--CceeEEEEEeccccc
Q 005736          365 SMFNMVL-HE---ETGTVRFNLYECIPGHVK--YDYLTSCEVKMKYVA  406 (680)
Q Consensus       365 e~f~~~v-~~---~~~~l~l~v~d~d~~~~~--d~~lG~~~i~l~~l~  406 (680)
                      |+|.|.+ ..   ....|.|+|||+|.. .+  |++||++.++|.++.
T Consensus        75 e~f~f~~~~~~~~~~~~l~i~V~d~d~~-~~~~~~~lG~~~i~l~~l~  121 (141)
T 1v27_A           75 QTFIYSPVHRREFRERMLEITLWDQARV-REEESEFLGEILIELETAL  121 (141)
T ss_dssp             CCCEECSCCTTGGGTCEEEEEEEEBCSS-SSCCBCCCEEEEEEGGGCC
T ss_pred             cEEEEccCCHHHhcCCEEEEEEEECCCC-cCCCCceEEEEEEEccccC
Confidence            9999984 32   246899999999986 45  999999999999985

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.58  E-value=6e-15  Score=133.25  Aligned_cols=94  Identities=16%  Similarity=0.300  Sum_probs=76.2

Q ss_pred             cCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE-----cceeeeecc-CCCCCCccc
Q 005736          291 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-----EELTRRTDA-RPGSDPRWD  364 (680)
Q Consensus       291 ~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~-----~~~~~~T~v-~~t~nP~Wn  364 (680)
                      .+..|.|.|+|++|++|++.|..|.+                      ||||++.+     +...++|++ ++++||+||
T Consensus        14 ~~~~~~L~v~v~~a~~L~~~d~~~~~----------------------dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wn   71 (129)
T 2bwq_A           14 DKVGHQLIVTILGAKDLPSREDGRPR----------------------NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWN   71 (129)
T ss_dssp             ETTTTEEEEEEEEEESCCCCTTSCCB----------------------CEEEEEEEESSCSGGGEEECCCCSSBSSCEEE
T ss_pred             ccCCCEEEEEEEEeeCCCCCCCCCCC----------------------CCEEEEEEecCCCCCcceecccccCCCCCccc
Confidence            34459999999999999999876653                      99999999     467889998 799999999


Q ss_pred             eeEEEEEec----CCCeEEEEEEEeCCCCCC--CceeEEEEEecccccC
Q 005736          365 SMFNMVLHE----ETGTVRFNLYECIPGHVK--YDYLTSCEVKMKYVAD  407 (680)
Q Consensus       365 e~f~~~v~~----~~~~l~l~v~d~d~~~~~--d~~lG~~~i~l~~l~~  407 (680)
                      |+|.|.+..    ....|.|+|||+|.. ++  |++||++.++|.++..
T Consensus        72 e~f~f~~~~~~~~~~~~l~~~V~d~d~~-~~~~~~~lG~~~i~l~~l~~  119 (129)
T 2bwq_A           72 QTFIYSPVHRREFRERMLEITLWDQARV-REEESEFLGEILIELETALL  119 (129)
T ss_dssp             EEEEECSCCGGGGGGCEEEEEEEEC--------CEEEEEEEEEGGGCCC
T ss_pred             cEEEEccCCHHHhcCCeEEEEEEECCcC-cCcCCceeEEEEEEccccCC
Confidence            999999532    246899999999986 45  9999999999999863

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.57  E-value=8.3e-15  Score=134.74  Aligned_cols=94  Identities=17%  Similarity=0.270  Sum_probs=80.5

Q ss_pred             CcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccce
Q 005736          292 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDS  365 (680)
Q Consensus       292 ~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne  365 (680)
                      ...|.|.|+|++|++|++.+..|.+                      ||||++.++.     ..++|++ ++++||+|||
T Consensus        26 ~~~~~L~V~v~~a~~L~~~d~~g~~----------------------dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne   83 (142)
T 2chd_A           26 QDNSNLQCTIIRAKGLKPMDSNGLA----------------------DPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNE   83 (142)
T ss_dssp             GGGTEEEEEEEEEESCCCCCTTSCC----------------------CEEEEEEEESCCSGGGEEECCCCCSCSSCEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCC----------------------CCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcC
Confidence            4459999999999999999876643                      9999999974     6889998 7899999999


Q ss_pred             eEEEE-EecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          366 MFNMV-LHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       366 ~f~~~-v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      +|.|. +...   ...|.|+|||+|.. ++|++||++.++|.++..+
T Consensus        84 ~f~f~~~~~~~~~~~~l~i~V~d~d~~-~~d~~iG~~~i~l~~l~~~  129 (142)
T 2chd_A           84 TLQYHGITEEDMQRKTLRISVCDEDKF-GHNEFIGETRFSLKKLKAN  129 (142)
T ss_dssp             EEEEESCCHHHHHHCEEEEEEEEECTT-SCEEEEEEEEEEGGGCCTT
T ss_pred             EEEEcccCHHHccCCEEEEEEEECCCC-CCCcEEEEEEEEHHHcCCC
Confidence            99998 5532   36899999999986 5899999999999998643

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.57  E-value=7e-15  Score=134.41  Aligned_cols=113  Identities=13%  Similarity=0.177  Sum_probs=89.4

Q ss_pred             CcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccce
Q 005736          292 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDS  365 (680)
Q Consensus       292 ~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne  365 (680)
                      +..|.|.|+|++|++|+..|..|.+                      ||||++.++.     ..++|++ +++.||+|||
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~g~~----------------------dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne   70 (138)
T 3n5a_A           13 PSANSIIVNIIKARNLKAMDIGGTS----------------------DPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNE   70 (138)
T ss_dssp             TTTTEEEEEEEEEESCCCCBTTTBC----------------------CEEEEEEEEETTEEEEEEECCCCSSCSSCEEEE
T ss_pred             CCCCeEEEEEEEeeCCCCcCCCCCc----------------------CeEEEEEEEeCCCccceEeCccccCCCCCcCcc
Confidence            4459999999999999999876543                      9999999973     4778888 7899999999


Q ss_pred             eEEEEEecCC---CeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhh---ccCceeeeeecc
Q 005736          366 MFNMVLHEET---GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAE---FCGDEVEMTVPF  439 (680)
Q Consensus       366 ~f~~~v~~~~---~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~l  439 (680)
                      +|.|.+....   ..|.|+|||+|.. .+|++||++.+++.++...             ...|++   ..++...+|++|
T Consensus        71 ~f~f~v~~~~l~~~~l~~~V~d~~~~-~~~~~lG~~~i~l~~~~~~-------------~~~W~~l~~~~~~~~~~Wh~L  136 (138)
T 3n5a_A           71 SFAFDIPTEKLRETTIIITVMDKDKL-SRNDVIGKIYLSWKSGPGE-------------VKHWKDMIARPRQPVAQWHQL  136 (138)
T ss_dssp             EEEEECCGGGGGGEEEEEEEEECCSS-SCCEEEEEEEESSSSCHHH-------------HHHHHHHHHSTTCCEEEEEEC
T ss_pred             eEEEECChhhcCceEEEEEEEECCCC-CCCcEEEEEEEccccCChH-------------HHHHHHHHhCCCCeEEEEeec
Confidence            9999987643   5799999999986 5899999999999875321             222332   235567788876


Q ss_pred             C
Q 005736          440 E  440 (680)
Q Consensus       440 ~  440 (680)
                      .
T Consensus       137 ~  137 (138)
T 3n5a_A          137 K  137 (138)
T ss_dssp             B
T ss_pred             C
Confidence            4

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.56  E-value=1.4e-14  Score=132.49  Aligned_cols=94  Identities=12%  Similarity=0.138  Sum_probs=79.8

Q ss_pred             CcCeEEEEEEEecCCCCCCCCC-CCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCcccee
Q 005736          292 AVGGIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWDSM  366 (680)
Q Consensus       292 ~~~G~L~V~v~~a~~L~~~d~~-g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wne~  366 (680)
                      ...|.|.|+|++|++|++.|.. |.                      +||||++.+.   .+.++|++ ++++||+|||+
T Consensus        19 ~~~~~L~v~v~~a~~L~~~d~~~~~----------------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~   76 (138)
T 1ugk_A           19 FERKAFVVNIKEARGLPAMDEQSMT----------------------SDPYIKMTILPEKKHKVKTRVLRKTLDPAFDET   76 (138)
T ss_dssp             GGGTEEEEEEEEEESCCCCBTTTTB----------------------CEEEEEEEEETTTCSEEECCCCSSCSSCEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCC----------------------CCCEEEEEEecCCCceEecCcCcCCCCCcEeeE
Confidence            4459999999999999999864 43                      3999999996   36889998 79999999999


Q ss_pred             EEEE-EecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          367 FNMV-LHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       367 f~~~-v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      |.|. +...   ...|.|+|||+|.. .+|++||++.++|.++...
T Consensus        77 f~f~~v~~~~~~~~~l~i~V~d~d~~-~~~~~lG~~~i~l~~l~~~  121 (138)
T 1ugk_A           77 FTFYGIPYTQIQELALHFTILSFDRF-SRDDIIGEVLIPLSGIELS  121 (138)
T ss_dssp             EEEECCCSTTGGGCEEEEEEEEECSS-CCCCCCEEEEEECTTCCCT
T ss_pred             EEEcCcCHHHhccCEEEEEEEECCCC-CCCcEEEEEEEehhHccCC
Confidence            9995 6542   35899999999986 5899999999999999643

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.56  E-value=4.8e-15  Score=137.41  Aligned_cols=94  Identities=17%  Similarity=0.233  Sum_probs=79.5

Q ss_pred             ccCcCeEEEEEEEecCCCCCCC-CCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCc
Q 005736          290 KKAVGGIVYVRVISASKLSRSS-LRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPR  362 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~d-~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~  362 (680)
                      +....|.|.|+|++|++|++.| ..|.                      +||||++.+.     ...++|++ ++++||+
T Consensus        18 y~~~~~~L~V~v~~a~~L~~~d~~~~~----------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~   75 (148)
T 3fdw_A           18 YEQQTQSLVVHVKECHQLAYADEAKKR----------------------SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPL   75 (148)
T ss_dssp             EETTTTEEEEEEEEEESCCCSBTTTTB----------------------CCEEEEEEEETCCSGGGEEECCCCSSCSSCE
T ss_pred             EeCCCCEEEEEEEEecCCCCcccCCCC----------------------CCeEEEEEEEcCCcccCccccccCCCCCCCc
Confidence            3345699999999999999887 3443                      3999999997     34778988 7899999


Q ss_pred             cceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      |||+|.|.+...   ...|.|+|||+|.. ++|++||++.++|.++.
T Consensus        76 wne~f~f~v~~~~~~~~~L~~~V~d~d~~-~~~~~iG~~~i~l~~l~  121 (148)
T 3fdw_A           76 YDETLRYEIPESLLAQRTLQFSVWHHGRF-GRNTFLGEAEIQMDSWK  121 (148)
T ss_dssp             EEEEEEEECCSTTGGGCEEEEEEEEECGG-GCEEEEEEEEEEHHHHH
T ss_pred             EeeEEEEEeChhHhCceEEEEEEEECCCC-cCCcEEEEEEEEccccc
Confidence            999999998764   34699999999986 58999999999999985

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.56  E-value=1.2e-14  Score=137.43  Aligned_cols=118  Identities=14%  Similarity=0.264  Sum_probs=92.1

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~  362 (680)
                      .+.+..|.|.|+|++|++|++.|..|.+                      ||||++.++.     ..++|++ ++++||+
T Consensus        31 ~y~~~~~~L~V~v~~a~~L~~~d~~g~~----------------------DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~   88 (166)
T 2cm5_A           31 MYSTQQGGLIVGIIRCVHLAAMDANGYS----------------------DPFVKLWLKPDMGKKAKHKTQIKKKTLNPE   88 (166)
T ss_dssp             EEETTTTEEEEEEEEEESCCCCSTTSCC----------------------CEEEEEEEETC---CCEEECCCCCSCSSCE
T ss_pred             EEECCCCEEEEEEEEeECCCCccCCCCC----------------------CcEEEEEEECCCCccceEeCCcccCCCCCc
Confidence            3334569999999999999999876653                      9999999975     6789998 7999999


Q ss_pred             cceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhh---ccCceeeee
Q 005736          363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAE---FCGDEVEMT  436 (680)
Q Consensus       363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~  436 (680)
                      |||+|.|.+...   ...|.|+|||+|.. ++|++||++.+++.++...             ...|+.   ..++....|
T Consensus        89 wne~f~f~v~~~~l~~~~L~i~V~d~d~~-~~~~~iG~~~i~l~~~~~~-------------~~~W~~l~~~~~~~~~~W  154 (166)
T 2cm5_A           89 FNEEFFYDIKHSDLAKKSLDISVWDYDIG-KSNDYIGGCQLGISAKGER-------------LKHWYECLKNKDKKIERW  154 (166)
T ss_dssp             EEEEEEEECCGGGGGGCEEEEEEEECCSS-SCCEEEEEEEEETTCCHHH-------------HHHHHHHHHCTTCCEEEE
T ss_pred             ccceEEEEcchHhcCCCEEEEEEEECCCC-CCCcEEEeEEEecccCCch-------------hHHHHHHHhCCCCcceEe
Confidence            999999998753   45899999999986 5899999999999876321             222332   235567778


Q ss_pred             eccCCC
Q 005736          437 VPFEGV  442 (680)
Q Consensus       437 ~~l~~~  442 (680)
                      ++|...
T Consensus       155 h~L~~~  160 (166)
T 2cm5_A          155 HQLQNE  160 (166)
T ss_dssp             EECBC-
T ss_pred             eECCCc
Confidence            877654

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.56  E-value=8.9e-15  Score=139.05  Aligned_cols=91  Identities=14%  Similarity=0.192  Sum_probs=78.4

Q ss_pred             CeEEEEEEEecCCCCCCCC-CCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCcccee
Q 005736          294 GGIVYVRVISASKLSRSSL-RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWDSM  366 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~-~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wne~  366 (680)
                      .|.|.|+|++|++|+++|. .|.                      +||||++.+..     ..++|++ ++++||+|||+
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~----------------------~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~   86 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKST----------------------PAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQS   86 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CC----------------------CEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCC----------------------CCceEEEEEECCCccccceeCccCCCCCCCCCCcE
Confidence            5999999999999999885 454                      39999999863     3778998 78999999999


Q ss_pred             EEEEEecCCCeEEEEEE-EeCCCCCCCceeEEEEEecccccC
Q 005736          367 FNMVLHEETGTVRFNLY-ECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       367 f~~~v~~~~~~l~l~v~-d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      |.|.+......|.|+|| |+|.. .+|++||++.++|.++..
T Consensus        87 f~f~v~~~~~~L~~~V~~d~d~~-~~d~~iG~~~i~l~~l~~  127 (171)
T 2q3x_A           87 LVFDESPQGKVLQVIVWGDYGRM-DHKCFMGVAQILLEELDL  127 (171)
T ss_dssp             EECSSCCTTEEEEEEEEEECSTT-CSSEEEEEEEECGGGSCT
T ss_pred             EEEEecCCCCEEEEEEEEcCCCC-CCCCEEEEEEEEHHHccc
Confidence            99998766678999999 99986 589999999999999863

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.55  E-value=3.7e-15  Score=137.06  Aligned_cols=90  Identities=17%  Similarity=0.269  Sum_probs=77.4

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce--------------eeeecc-CCC
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL--------------TRRTDA-RPG  358 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~--------------~~~T~v-~~t  358 (680)
                      .|.|.|+|++|++|+++|..|.+                      ||||++.++..              .++|++ +++
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~----------------------Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t   74 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYS----------------------DPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS   74 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCS----------------------CCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHH
T ss_pred             CCEEEEEEEEecCCCCCCCCCCC----------------------CceEEEEEecCCCcccccccccccceeeccccCCC
Confidence            48999999999999999876653                      99999999853              478887 689


Q ss_pred             CCCccceeEEEE-Eec---CCCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          359 SDPRWDSMFNMV-LHE---ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       359 ~nP~Wne~f~~~-v~~---~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      +||+|||+|.|. +..   ....|.|+|||+|.. ++|++||++.++|.++.
T Consensus        75 ~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~-~~~~~lG~~~i~l~~l~  125 (142)
T 1rh8_A           75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRF-SSNDFLGEVLIDLSSTS  125 (142)
T ss_dssp             HSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSS-SCEEEEEEEEEETTSCG
T ss_pred             CCCCCCCEEEECCcCHHHccCCEEEEEEEECCCC-CCCceEEEEEEeccccc
Confidence            999999999996 543   356899999999986 58999999999999885

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.54  E-value=1.5e-14  Score=135.72  Aligned_cols=119  Identities=13%  Similarity=0.163  Sum_probs=92.1

Q ss_pred             ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCcc
Q 005736          290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRW  363 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~W  363 (680)
                      +.+..|.|.|+|++|++|++.|..|.+                      ||||++.++.     ..++|++ ++++||+|
T Consensus        20 y~~~~~~L~V~v~~a~~L~~~d~~g~~----------------------dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~w   77 (159)
T 1tjx_A           20 YVPTAGKLTVVILEAKNLKKMDVGGLS----------------------DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY   77 (159)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCC----------------------CEEEEEEEEETTEEEEEEECCCCCSCSSCEE
T ss_pred             EcCCCCEEEEEEEEeeCCCCccCCCCC----------------------CeEEEEEEEeCCceeceeeCceecCCCCCcc
Confidence            334569999999999999999876653                      9999999962     4678888 78999999


Q ss_pred             ceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhh---ccCceeeeee
Q 005736          364 DSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAE---FCGDEVEMTV  437 (680)
Q Consensus       364 ne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~  437 (680)
                      ||+|.|.+...   ...|.|+|||+|.. ++|++||++.+++..+...             ...|.+   ..+.....|+
T Consensus        78 ne~f~f~v~~~~l~~~~l~i~V~d~d~~-~~~~~iG~~~i~l~~~~~~-------------~~~w~~l~~~~~~~~~~W~  143 (159)
T 1tjx_A           78 NESFSFEVPFEQIQKVQVVVTVLDYDKI-GKNDAIGKVFVGYNSTGAE-------------LRHWSDMLANPRRPIAQWH  143 (159)
T ss_dssp             EEEEEEECCGGGGGGCEEEEEEEECCSS-SCCEEEEEEEEETTCCHHH-------------HHHHHHHHHSTTCCEEEEE
T ss_pred             cceEEEEcCHHHhCCcEEEEEEEECCCC-CCCceEEEEEECCCCCCcH-------------HHHHHHHHHCCCCeeeeEE
Confidence            99999998753   35799999999986 5899999999999875211             112221   2345678899


Q ss_pred             ccCCCce
Q 005736          438 PFEGVNS  444 (680)
Q Consensus       438 ~l~~~~~  444 (680)
                      +|.....
T Consensus       144 ~L~~~~~  150 (159)
T 1tjx_A          144 TLQVEEE  150 (159)
T ss_dssp             ECBCHHH
T ss_pred             ECcCccc
Confidence            9876543

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.54  E-value=3e-14  Score=130.38  Aligned_cols=91  Identities=15%  Similarity=0.214  Sum_probs=75.3

Q ss_pred             ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc----ceeeeecc-CCCCCCccc
Q 005736          290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDA-RPGSDPRWD  364 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~----~~~~~T~v-~~t~nP~Wn  364 (680)
                      +....|.|.|+|++|++   +|..|.                      +||||++.+.    ...++|++ ++++||+||
T Consensus        21 y~~~~~~L~V~v~~a~~---~d~~g~----------------------sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wn   75 (138)
T 1wfm_A           21 YDCQKAELFVTRLEAVT---SNHDGG----------------------CDCYVQGSVANRTGSVEAQTALKKRQLHTTWE   75 (138)
T ss_dssp             EETTTTEEEEEEEEEEC---CCCSSC----------------------CCEEEEEEEEETTEEEEEECCCCCCCSSEECS
T ss_pred             EeCCCCEEEEEEEEEEc---CCCCCC----------------------cceEEEEEEEcCCCcccEecccCcCCCCCcCC
Confidence            33446999999999993   555554                      3999999994    23678998 799999999


Q ss_pred             eeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          365 SMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       365 e~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      |+|.|.+...   ...|.|+|||+|.. .+|++||++.++|.++.
T Consensus        76 E~f~f~v~~~~l~~~~L~~~V~d~d~~-~~dd~lG~~~i~l~~l~  119 (138)
T 1wfm_A           76 EGLVLPLAEEELPTATLTLTLRTCDRF-SRHSVAGELRLGLDGTS  119 (138)
T ss_dssp             SCEEEECCTTSSTTCEEEEEEEECCSS-CTTSCSEEEEEESSSSS
T ss_pred             ceEEEEecHHHcCCCEEEEEEEECCCC-CCCcEEEEEEEEccccc
Confidence            9999998753   35799999999986 68999999999999985

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.53  E-value=2.6e-14  Score=133.25  Aligned_cols=93  Identities=15%  Similarity=0.255  Sum_probs=73.8

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc--ce---eeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--EL---TRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~--~~---~~~T~v-~~t~nP~  362 (680)
                      .+....|.|.|+|++|++|++.|..|.+                      ||||++.+.  +.   .++|++ ++++||+
T Consensus        24 ~y~~~~~~L~v~v~~a~~L~~~d~~g~~----------------------dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~   81 (153)
T 1w15_A           24 CYQSTTNTLTVVVLKARHLPKSDVSGLS----------------------DPYVKVNLYHAKKRISKKKTHVKKCTPNAV   81 (153)
T ss_dssp             EEETTTTEEEEEEEEEESCC------CC----------------------CEEEEEEEEETTEEEEEEECCCCCSCSSEE
T ss_pred             EEcCCCCEEEEEEEEeECCCCcCCCCCC----------------------CeEEEEEEEeCCeEeceEecCcccCCCCCe
Confidence            3334559999999999999999876653                      999999994  32   678888 7899999


Q ss_pred             cceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736          363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY  404 (680)
Q Consensus       363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~  404 (680)
                      |||+|.|.+...   ...|.|+|||+|.. .+|++||++.+++.+
T Consensus        82 wne~f~f~v~~~~l~~~~l~v~V~d~d~~-~~~~~lG~~~i~l~~  125 (153)
T 1w15_A           82 FNELFVFDIPCESLEEISVEFLVLDSERG-SRNEVIGRLVLGATA  125 (153)
T ss_dssp             EEEEEEEECCSSSSTTEEEEEEEEECCTT-SCCEEEEEEEESTTC
T ss_pred             ecceEEEECCHHHhCceEEEEEEEeCCCC-CCCcEEEEEEECCCC
Confidence            999999998764   25799999999986 589999999999987

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.7e-14  Score=131.33  Aligned_cols=94  Identities=16%  Similarity=0.110  Sum_probs=78.5

Q ss_pred             cCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCccc
Q 005736          291 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPRWD  364 (680)
Q Consensus       291 ~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~Wn  364 (680)
                      ....|.|.|+|++|++|+++|..| +                      ||||++.+..     ..++|++ ++++||+||
T Consensus        20 ~~~~~~L~v~v~~a~~L~~~d~~g-~----------------------dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wn   76 (142)
T 2dmg_A           20 SSQRNKLIVVVHACRNLIAFSEDG-S----------------------DPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFD   76 (142)
T ss_dssp             ETTTTEEEEEEEEEECCCCSSTTC-C----------------------CEEEEEEEESCCCSSSCEECCCCCSCSSCEEE
T ss_pred             eCCCCEEEEEEEEeECCCCCCCCC-C----------------------CeeEEEEEEcCCCCCCcccCCccCCCCCCCcC
Confidence            344599999999999999998766 4                      9999999942     5778998 799999999


Q ss_pred             eeEEEEEecC---CCeEEEEEEEeCCCCC-CCceeEEEEEecccccC
Q 005736          365 SMFNMVLHEE---TGTVRFNLYECIPGHV-KYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       365 e~f~~~v~~~---~~~l~l~v~d~d~~~~-~d~~lG~~~i~l~~l~~  407 (680)
                      |+|.|.+...   ...|.|+|||+|..+. .|++||++.++|.++..
T Consensus        77 e~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~  123 (142)
T 2dmg_A           77 QSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEEL  123 (142)
T ss_dssp             EEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTT
T ss_pred             ceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccc
Confidence            9999998642   3589999999997533 35799999999998853

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.4e-14  Score=132.50  Aligned_cols=101  Identities=18%  Similarity=0.161  Sum_probs=79.9

Q ss_pred             ccCcCeEEEEEEEecCCCCCC-CCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccc
Q 005736          290 KKAVGGIVYVRVISASKLSRS-SLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWD  364 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~-d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wn  364 (680)
                      +.+..|.|.|+|++|++|++. |..|...   .             ...+||||++.+.   ...++|++ ++++||+||
T Consensus        21 y~~~~~~L~V~v~~a~~L~~~~d~~g~~~---~-------------~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wn   84 (147)
T 2enp_A           21 YDLLHNHLTVRVIEARDLPPPISHDGSRQ---D-------------MAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFE   84 (147)
T ss_dssp             EETTTTEEEEEEEEEECCCCSCSSCCSSC---T-------------TCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCC
T ss_pred             EcCCCCEEEEEEEEEeCCCCccccccccc---c-------------CCCCCcEEEEEEEeCCCcceEeecccCCCCCeEe
Confidence            334569999999999999984 5433100   0             0024999999997   45788998 799999999


Q ss_pred             eeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          365 SMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       365 e~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      |+|.|.+...   ...|.|+|||+|.. .+|++||++.++|.++..
T Consensus        85 e~f~f~v~~~~l~~~~L~~~V~d~d~~-~~~~~iG~~~i~l~~l~~  129 (147)
T 2enp_A           85 ERYTFEIPFLEAQRRTLLLTVVDFDKF-SRHCVIGKVSVPLCEVDL  129 (147)
T ss_dssp             BCCEECCCHHHHHHSEEEEEEECCSTT-CCSCCCEEEEEETTTSCT
T ss_pred             eeEEEEeChHHhccCEEEEEEEECCCC-cCCcEEEEEEEechhcCC
Confidence            9999998752   35899999999986 589999999999999854

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.52  E-value=5.4e-14  Score=157.39  Aligned_cols=116  Identities=21%  Similarity=0.340  Sum_probs=104.4

Q ss_pred             CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecCC-CCc
Q 005736          486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDE  562 (680)
Q Consensus       486 ~~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~-~d~  562 (680)
                      ..+.|.|+|++|++|+.++..|.+||||+++++++.++|+++ +|+||.|||+|.|.+... ...|.|+|||++.. +|+
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d  464 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD  464 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence            356999999999999999989999999999999999999999 999999999999999764 57899999999988 899


Q ss_pred             eeEEEEEEcccccCCCe----eeEEEeCCCCCCeEEEEEEEEE
Q 005736          563 NMGSARVNLEGLVEGSV----RDIWVPLEKVNTGELRLQIEAT  601 (680)
Q Consensus       563 ~iG~~~i~L~~l~~~~~----~~~w~~L~~~~~G~i~l~l~~~  601 (680)
                      +||++.++|.++..+..    ...|++|.+..+|+|.++++..
T Consensus       465 ~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          465 FLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             EEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             ceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            99999999999875433    6799999998899999988654

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.51  E-value=1.5e-13  Score=124.32  Aligned_cols=94  Identities=20%  Similarity=0.272  Sum_probs=75.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc--CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCcee
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM  564 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~--~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~i  564 (680)
                      +.|.|+|++|+++..   .+.+||||++. + +..+|+++  ++.||.|||+|.|.+.+....|.|+|||++ . +|++|
T Consensus         5 ~~L~V~V~~A~~l~~---~g~~DPYv~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~i   78 (131)
T 2cjt_A            5 SLLCVGVKKAKFDGA---QEKFNTYVTLK-V-QNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMV   78 (131)
T ss_dssp             EEEEEEEEEEECSSC---GGGCEEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEE
T ss_pred             eEEEEEEEEeECCCC---CCCcCeEEEEE-e-cCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeE
Confidence            589999999998852   57899999999 3 33445544  799999999999999877778999999999 6 89999


Q ss_pred             EEEEEEcccccCCC--eeeEEEeCC
Q 005736          565 GSARVNLEGLVEGS--VRDIWVPLE  587 (680)
Q Consensus       565 G~~~i~L~~l~~~~--~~~~w~~L~  587 (680)
                      |++.++|.++....  ....|.++.
T Consensus        79 G~~~i~l~~l~~~~~~~~~~~~~~~  103 (131)
T 2cjt_A           79 GTVWIPLRTIRQSNEEGPGEWLTLD  103 (131)
T ss_dssp             EEEEEEGGGSCBCSSCCCCEEEECB
T ss_pred             EEEEEEHHHhhhcCCCCccccEEcc
Confidence            99999999986432  122565554

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.49  E-value=2.7e-13  Score=121.12  Aligned_cols=111  Identities=16%  Similarity=0.224  Sum_probs=98.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-C-CCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-CC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-GD  561 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~-t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~-~d  561 (680)
                      ..|+|.|.+|.+|+     +.+|||+++.+.+.+++|+++ + +.||+|||.|+|++..   .+..|.|.|+|++.. ++
T Consensus        21 msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~n   95 (144)
T 3l9b_A           21 MALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSN   95 (144)
T ss_dssp             EEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCC
T ss_pred             EEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCC
Confidence            37999999999998     578999999999999999999 4 9999999999999874   478999999999998 99


Q ss_pred             ceeEEEEEEcccccCCCeeeEEEeCCCCC----CeEEEEEEEEEEe
Q 005736          562 ENMGSARVNLEGLVEGSVRDIWVPLEKVN----TGELRLQIEATRV  603 (680)
Q Consensus       562 ~~iG~~~i~L~~l~~~~~~~~w~~L~~~~----~G~i~l~l~~~~~  603 (680)
                      ++||++.++|+++........+-+|.+.+    .+.|.+.++|.++
T Consensus        96 rlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           96 KLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             EEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred             CEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCC
Confidence            99999999999998777666677776643    4899999999964

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.47  E-value=3.3e-13  Score=149.56  Aligned_cols=107  Identities=20%  Similarity=0.347  Sum_probs=95.2

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeC--CceEEEEEEEEecCC-CCc
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVKCYNEEIF-GDE  562 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~--~~~~L~i~V~d~~~~-~d~  562 (680)
                      .+.|+|+|++|++|+. |..+.+||||+|+++++.++|+++ +++||.|||+|.|.+..  ..+.|.|+|||+|.. +|+
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD  471 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDD  471 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCE
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            4699999999999988 888999999999999999999999 99999999999998643  578899999999988 889


Q ss_pred             eeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEEEEE
Q 005736          563 NMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT  601 (680)
Q Consensus       563 ~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l~~~  601 (680)
                      +||++.++|..    ..+..|++|.   .|.|+++++..
T Consensus       472 ~LG~~~~~L~~----g~~~~~~~l~---~G~l~~~~~~~  503 (540)
T 3nsj_A          472 LLGSCDRSPHS----GFHEVTCELN---HGRVKFSYHAK  503 (540)
T ss_dssp             EEEEEEECCCS----EEEEEEEECS---SSEEEEEEEEE
T ss_pred             EEEEEEEEeeC----CcEEEEEEcC---CeEEEEEEEEE
Confidence            99999999883    3467899986   59999988755

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.47  E-value=1.2e-13  Score=124.96  Aligned_cols=86  Identities=13%  Similarity=0.203  Sum_probs=70.7

Q ss_pred             cCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeec-cC-CCCCCccceeEEEE
Q 005736          293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTD-AR-PGSDPRWDSMFNMV  370 (680)
Q Consensus       293 ~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~-v~-~t~nP~Wne~f~~~  370 (680)
                      +.|.|.|+|++|+++..   .|.                      +||||+++ + +..+|+ ++ ++.||+|||+|.|.
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~----------------------~DPYv~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~   55 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEK----------------------FNTYVTLK-V-QNVKSTTIAVRGSQPSWEQDFMFE   55 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGG----------------------CEEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEE
T ss_pred             cceEEEEEEEEeECCCC---CCC----------------------cCeEEEEE-e-cCEEEeEecCCCCCceECCEEEEE
Confidence            45999999999998852   232                      39999999 3 333444 44 79999999999999


Q ss_pred             EecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          371 LHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       371 v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      +.+....|.|+|||+| . .+|++||++.++|.++..
T Consensus        56 v~~~~~~L~~~V~D~d-~-~~dd~iG~~~i~l~~l~~   90 (131)
T 2cjt_A           56 INRLDLGLTVEVWNKG-L-IWDTMVGTVWIPLRTIRQ   90 (131)
T ss_dssp             ECCCSSEEEEEEEECC-S-SCEEEEEEEEEEGGGSCB
T ss_pred             EeCCCCeEEEEEEECC-C-CCCCeEEEEEEEHHHhhh
Confidence            9887778999999999 5 689999999999999864

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.45  E-value=5.2e-13  Score=148.00  Aligned_cols=165  Identities=15%  Similarity=0.155  Sum_probs=121.6

Q ss_pred             ecCCCe-EEEEEEEcCCCCCccCcc-cCccHHHHHHHHHHHHHhhcccc-------CcceEEeccc---------cc---
Q 005736          229 FVSIPD-VRIGVAFGSGGSQSLPAT-ELPGVSNWLARLINETLVKTLVE-------PRRRCYSLPA---------VD---  287 (680)
Q Consensus       229 f~~~P~-id~~~~~~~~~~~~~~i~-~iP~l~~~i~~~i~~~~~~~~v~-------P~~~~~~l~~---------~~---  287 (680)
                      +-..|. |+|.+.++..      +. .-+--..-++.+|.+.+...-..       ||-.. ++..         ..   
T Consensus       311 v~~~P~~I~~~l~PI~~------Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~~-~l~g~~C~C~C~~~~~t~  383 (540)
T 3nsj_A          311 LPSNPGLVDYSLEPLHT------LLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQH-KSSHDSCQCECQDSKVTN  383 (540)
T ss_dssp             TTTSCEEEEEEEEEGGG------GSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTEE-ECSSCTTCEEESCTTTBC
T ss_pred             HhhCCceEEEEEEEHHH------hcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCCc-cCCCCceEeeCCCCCCcc
Confidence            344666 5899986653      22 23567788888888888776555       23321 1311         00   


Q ss_pred             ---ccccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCcc
Q 005736          288 ---LRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRW  363 (680)
Q Consensus       288 ---~~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~W  363 (680)
                         -......|.|+|+|++|++|++ |..|.+                      ||||+|.++++..+|++ ++++||+|
T Consensus       384 ~~~C~~~~~~~~L~V~V~~A~~L~~-D~~g~s----------------------DPYV~v~l~~~~~kTkvik~tlNP~W  440 (540)
T 3nsj_A          384 QDCCPRQRGLAHLVVSNFRAEHLWG-DYTTAT----------------------DAYLKVFFGGQEFRTGVVWNNNNPRW  440 (540)
T ss_dssp             GGGCBSSTTEEEEEEEEEEEESCCC-SSCSCC----------------------CEEEEEEETTEEEECCCBCSCSSCBC
T ss_pred             cccccccCcccEEEEEEEEccCCCc-ccCCCc----------------------CeEEEEEECCEeeeeeeecCCCCCCC
Confidence               0111224899999999999998 876654                      99999999999999998 89999999


Q ss_pred             ceeEEEEEec--CCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCC
Q 005736          364 DSMFNMVLHE--ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEG  441 (680)
Q Consensus       364 ne~f~~~v~~--~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~  441 (680)
                      ||+|.|.+.+  ..+.|.|+|||+|.. .+||+||++.++|..                         | .++.|++++ 
T Consensus       441 ne~f~f~~~~~~~~~~L~~~V~D~D~~-~~dD~LG~~~~~L~~-------------------------g-~~~~~~~l~-  492 (540)
T 3nsj_A          441 TDKMDFENVLLSTGGPLRVQVWDADYG-WDDDLLGSCDRSPHS-------------------------G-FHEVTCELN-  492 (540)
T ss_dssp             CCCEEEEEEETTTCCCEEEEEEECCSS-SCCEEEEEEEECCCS-------------------------E-EEEEEEECS-
T ss_pred             CeEEEEEEecCCCCCEEEEEEEECCCC-CCCCEEEEEEEEeeC-------------------------C-cEEEEEEcC-
Confidence            9999998654  467899999999986 589999999999872                         1 356788765 


Q ss_pred             CceeeEEEEEEE
Q 005736          442 VNSGELTVRLVL  453 (680)
Q Consensus       442 ~~~G~l~~~l~l  453 (680)
                        +|.|++.+.+
T Consensus       493 --~G~l~~~~~~  502 (540)
T 3nsj_A          493 --HGRVKFSYHA  502 (540)
T ss_dssp             --SSEEEEEEEE
T ss_pred             --CeEEEEEEEE
Confidence              5888877654

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.45  E-value=3.4e-13  Score=150.90  Aligned_cols=121  Identities=18%  Similarity=0.309  Sum_probs=101.0

Q ss_pred             cCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736          293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       293 ~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      ..|.|+|+|++|++|++.|..|.+                      ||||++.+++..++|++ ++|+||+|||+|.|.+
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~s----------------------dpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~  442 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKS----------------------NPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFI  442 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCC----------------------CEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEE
T ss_pred             CCceEEEEeceeecCCCCCCCCCC----------------------CeEEEEEECCeeccCCccCCCCCCccCceEEEEe
Confidence            358999999999999999876654                      99999999999999998 7999999999999999


Q ss_pred             ecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEE
Q 005736          372 HEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVR  450 (680)
Q Consensus       372 ~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~  450 (680)
                      ... .+.|.|+|||+|.. ++|++||++.+++.++..+..                  .......|+++.+...|++.+.
T Consensus       443 ~~~~~~~l~~~v~d~d~~-~~~d~lG~~~~~l~~l~~~~~------------------~~~~~~~~~~l~~~~~G~i~l~  503 (510)
T 3jzy_A          443 KDLYQDVLCLTLFDRDQF-SPDDFLGRTEIPVAKIRTEQE------------------SKGPMTRRLLLHEVPTGEVWVR  503 (510)
T ss_dssp             SCTTTCEEEEEEEECCSS-SSCCEEEEEEEEHHHHHHHHH------------------HHCSCCEEEECBSSSSCEEEEE
T ss_pred             cCCCCCEEEEEEEeCCCC-CCCCceEEEEEEHHHhccccC------------------CCCceeeeecCCCCCCceEEEE
Confidence            876 46799999999986 589999999999999853210                  0013567889988888999988


Q ss_pred             EEEe
Q 005736          451 LVLK  454 (680)
Q Consensus       451 l~l~  454 (680)
                      +.+.
T Consensus       504 ~~l~  507 (510)
T 3jzy_A          504 FDLQ  507 (510)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.44  E-value=4.9e-13  Score=126.04  Aligned_cols=84  Identities=20%  Similarity=0.213  Sum_probs=72.2

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc--CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCce
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDEN  563 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~--~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~  563 (680)
                      .+.|.|+|++|+++.   ..+.+||||++.  .+..+|+++  ++.||.|||+|.|.+.+....|.|+|||++ . +|++
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   86 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   86 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEE
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCce
Confidence            358999999999884   257899999999  334566655  799999999999999877778999999999 6 8999


Q ss_pred             eEEEEEEcccccC
Q 005736          564 MGSARVNLEGLVE  576 (680)
Q Consensus       564 iG~~~i~L~~l~~  576 (680)
                      ||++.++|.++..
T Consensus        87 iG~~~i~L~~l~~   99 (167)
T 2cjs_A           87 VGTVWIPLRTIRQ   99 (167)
T ss_dssp             EEEEEEEGGGSCB
T ss_pred             EEEEEEEHHHhcc
Confidence            9999999999864

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.38  E-value=8.4e-13  Score=124.43  Aligned_cols=85  Identities=12%  Similarity=0.185  Sum_probs=70.5

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-C-CCCCCccceeEEEEE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-R-PGSDPRWDSMFNMVL  371 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~-~t~nP~Wne~f~~~v  371 (680)
                      .|+|+|+|++|+++..   .|.                      +||||+++  .+..+|++ + ++.||+|||+|.|.+
T Consensus        13 ~~~L~V~V~~A~~l~~---~g~----------------------~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v   65 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDGA---QEK----------------------FNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEI   65 (167)
T ss_dssp             CCEEEEEEEEEECSSC---GGG----------------------CEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEC
T ss_pred             eEEEEEEEEEEECCCC---CCC----------------------CCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEe
Confidence            4899999999998742   232                      39999999  33445554 4 699999999999999


Q ss_pred             ecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          372 HEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       372 ~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      .+....|.|+|||+| . .+|++||++.|+|.++..
T Consensus        66 ~~~~~~L~~~V~D~d-~-~~dd~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           66 NRLDLGLTVEVWNKG-L-IWDTMVGTVWIPLRTIRQ   99 (167)
T ss_dssp             CCTTSEEEEEEEECC-S-SCCEEEEEEEEEGGGSCB
T ss_pred             eCCCCEEEEEEEECC-C-CCCceEEEEEEEHHHhcc
Confidence            987778999999999 5 589999999999999864

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.34  E-value=5.6e-12  Score=112.62  Aligned_cols=85  Identities=7%  Similarity=0.161  Sum_probs=76.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-C-CCCCCccceeEEEEEec
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-R-PGSDPRWDSMFNMVLHE  373 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~-~t~nP~Wne~f~~~v~~  373 (680)
                      .|+|+|.+|++|+.     .                      .|||+++.+.+.+++|++ + ++.||+|||+|.+.+..
T Consensus        22 sL~V~l~~a~~Lpg-----~----------------------~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~   74 (144)
T 3l9b_A           22 ALIVHLKTVSELRG-----R----------------------ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVAS   74 (144)
T ss_dssp             EEEEEEEEEESCCS-----C----------------------EEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESS
T ss_pred             EEEEEEEEecCCCC-----C----------------------CCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCC
Confidence            79999999999994     2                      299999999999999998 6 69999999999999886


Q ss_pred             C---CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          374 E---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       374 ~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      .   ++.|.+.|+|+++. .++++||++.++|+++...
T Consensus        75 ~ld~~e~L~v~V~d~~~v-~~nrlIG~~~i~Lq~lv~~  111 (144)
T 3l9b_A           75 SIDRNEVLEIQIFNYSKV-FSNKLIGTFRMVLQKVVEE  111 (144)
T ss_dssp             CCCTTCEEEEEEEEECTT-SCCEEEEEEEEESHHHHHH
T ss_pred             CCCCCCEEEEEEEECccc-cCCCEEEEEEEEhHHhccC
Confidence            3   56899999999998 5999999999999999643

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.32  E-value=2.6e-12  Score=146.61  Aligned_cols=108  Identities=25%  Similarity=0.370  Sum_probs=96.0

Q ss_pred             CcEEEEEEEEeecCCC---CCCCCCCCcEEEEEEC---CEEEeeecc-CCCCCeeeeEEEEEeeC-CceEEEEEEEEecC
Q 005736          487 GRKINVTVVEGKDLMP---KDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEI  558 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~---~~~~~~~dpyv~v~l~---~~~~~T~~~-~t~nP~wne~f~f~v~~-~~~~L~i~V~d~~~  558 (680)
                      .+.|.|+|++|++|+.   ++..+.+||||+++++   ..+++|+++ +++||+|||+|.|.+.. ....|.|+|||++.
T Consensus        17 ~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~   96 (749)
T 1cjy_A           17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   96 (749)
T ss_dssp             CEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCS
T ss_pred             ccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCC
Confidence            4699999999999988   7777899999999996   478999999 99999999999999987 46789999999997


Q ss_pred             CCCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEE
Q 005736          559 FGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRL  596 (680)
Q Consensus       559 ~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l  596 (680)
                      ..|++||++.++|.++..+.....|++|.+.  +++.+
T Consensus        97 ~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~--~e~~l  132 (749)
T 1cjy_A           97 VMDETLGTATFTVSSMKVGEKKEVPFIFNQV--TEMVL  132 (749)
T ss_dssp             SSCEEEEEECCBSTTSCTTCCCCEEEEETTT--EEEEE
T ss_pred             CCCceeEEEEEEHHHcCCCCceEEEEecCCC--ceEee
Confidence            7789999999999999888888999999874  55444

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.30  E-value=2.1e-11  Score=138.18  Aligned_cols=112  Identities=19%  Similarity=0.273  Sum_probs=93.4

Q ss_pred             CCcEEEEEEEEeecCCCCCC--CCCCCcEEEEEE-C----CEEEeeecc-CC-CCCeeeeEEEEEeeCC-ceEEEEEEEE
Q 005736          486 TGRKINVTVVEGKDLMPKDK--SGKCDPYVKLQY-G----KIVQRTRTA-HS-PNHVWNQKFELDEIGG-GECLMVKCYN  555 (680)
Q Consensus       486 ~~~~L~V~I~~a~~L~~~~~--~~~~dpyv~v~l-~----~~~~~T~~~-~t-~nP~wne~f~f~v~~~-~~~L~i~V~d  555 (680)
                      ..+.|+|+|++|++|+..+.  .+.+||||+|.+ +    ..+++|+++ ++ .||.|||+|.|.+..+ ...|+|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            34689999999999998873  688999999999 3    278999999 76 9999999999998865 4789999999


Q ss_pred             ecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCCC-----CeEEEEEEEE
Q 005736          556 EEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA  600 (680)
Q Consensus       556 ~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~  600 (680)
                      ++.. ++++||++.++|.++..+   .+|++|.+..     .|.|.+.+++
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~~~~~~~L~v~i~~  622 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISI  622 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcCCCCceEEEEEEEE
Confidence            9988 899999999999998754   3689997643     2556666655

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.25  E-value=9.8e-12  Score=141.91  Aligned_cols=92  Identities=16%  Similarity=0.335  Sum_probs=80.5

Q ss_pred             cCeEEEEEEEecCCCCC---CCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccce
Q 005736          293 VGGIVYVRVISASKLSR---SSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWDS  365 (680)
Q Consensus       293 ~~G~L~V~v~~a~~L~~---~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wne  365 (680)
                      +.|.|+|+|++|++|++   +|..|.+                      ||||++.++   ...++|++ ++++||+|||
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~s----------------------DPYV~V~l~~~~~~k~kTkvik~tlNPvWNE   73 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTP----------------------DPYVELFISTTPDSRKRTRHFNNDINPVWNE   73 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCC----------------------CEEEEEECTTSTTCCEECCCCTTCSSCEEEE
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCc----------------------CeEEEEEEecCCCCeEecceEcCCCCCeeee
Confidence            45999999999999998   7765543                      999999998   46789998 7999999999


Q ss_pred             eEEEEEecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          366 MFNMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       366 ~f~~~v~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      +|.|.+... .+.|.|+|||+|.. + |++||++.++|.++..+
T Consensus        74 tF~F~v~~~~~~~L~~~V~D~D~~-~-ddfIG~v~I~L~~L~~g  115 (749)
T 1cjy_A           74 TFEFILDPNQENVLEITLMDANYV-M-DETLGTATFTVSSMKVG  115 (749)
T ss_dssp             EEEEEECTTSCCBCEEEEEECCSS-S-CEEEEEECCBSTTSCTT
T ss_pred             EEEEEecCCCCCEEEEEEEECCCC-C-CceeEEEEEEHHHcCCC
Confidence            999999874 57899999999986 5 99999999999998643

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.25  E-value=5.2e-13  Score=147.48  Aligned_cols=97  Identities=20%  Similarity=0.410  Sum_probs=14.1

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEeeecc-CC---CCCeeeeEEEEEeeCCceEEEEEEEEe-cC--
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HS---PNHVWNQKFELDEIGGGECLMVKCYNE-EI--  558 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~T~~~-~t---~nP~wne~f~f~v~~~~~~L~i~V~d~-~~--  558 (680)
                      .+.|+|+|++|++|++++     ||||+++++++ ..||+++ +|   .||.|||+|.|.+.+....|.|+|||+ +.  
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~   84 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKR   84 (483)
T ss_dssp             EECC--------------------------------------------------CCEECC--------------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccc
Confidence            457999999999998776     99999999764 6799999 99   999999999999765568899999995 42  


Q ss_pred             -C-CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          559 -F-GDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       559 -~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                       . +|++||.+.|++.++..+...+.||+|.+
T Consensus        85 ~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~  116 (483)
T 3bxj_A           85 KKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL  116 (483)
T ss_dssp             ----------------------CCEECC----
T ss_pred             cCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence             3 89999999999999988777889999953

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.20  E-value=1.1e-10  Score=132.33  Aligned_cols=92  Identities=21%  Similarity=0.325  Sum_probs=77.9

Q ss_pred             cCeEEEEEEEecCCCCCCCC--CCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCC-CCCcc
Q 005736          293 VGGIVYVRVISASKLSRSSL--RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPG-SDPRW  363 (680)
Q Consensus       293 ~~G~L~V~v~~a~~L~~~d~--~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t-~nP~W  363 (680)
                      ..+.|+|+|++|++|+..+.  .|.                      +||||+|.+.+     ..++|++ +++ .||+|
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~----------------------~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~W  552 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSI----------------------VDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRW  552 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSC----------------------CCEEEEEEEESSGGGCEEEECCCCTTCSSSCEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCC----------------------CCcEEEEEEecCCCCcceeecccccCCCCCCcc
Confidence            35899999999999998873  232                      49999999943     6789997 665 99999


Q ss_pred             ceeEEEEEecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          364 DSMFNMVLHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       364 ne~f~~~v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      ||+|.|.+.... ..|+|+|||+|.. ++|++||++.++|..|..
T Consensus       553 nE~f~F~v~~~el~~L~~~V~D~D~~-~~dd~iG~~~ipl~~L~~  596 (624)
T 1djx_A          553 DMEFEFEVTVPDLALVRFMVEDYDSS-SKNDFIGQSTIPWNSLKQ  596 (624)
T ss_dssp             EEEEEEEESCGGGCEEEEEEEECCSS-SCCEEEEEEEEEGGGBCC
T ss_pred             CceEEEEEecCCCCEEEEEEEEcCCC-CCCceeEEEEEEHHHcCC
Confidence            999999998753 6799999999986 589999999999999853

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.12  E-value=6.5e-12  Score=138.71  Aligned_cols=88  Identities=18%  Similarity=0.288  Sum_probs=9.0

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcce-eeeecc-CCC---CCCccceeEE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDA-RPG---SDPRWDSMFN  368 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~-~~~T~v-~~t---~nP~Wne~f~  368 (680)
                      .|.|+|+|++|++|+++|                           ||||++.+++. ..+|++ ++|   +||+|||+|.
T Consensus        10 ~~~L~V~VieAk~L~~~d---------------------------dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~   62 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK---------------------------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFE   62 (483)
T ss_dssp             EECC------------------------------------------------------------------------CCEE
T ss_pred             ccEEEEEEEEcCCcCCCC---------------------------CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEE
Confidence            489999999999998865                           89999999865 568888 677   9999999999


Q ss_pred             EEEecCCCeEEEEEEEe-CC--CCCCCceeEEEEEecccccCC
Q 005736          369 MVLHEETGTVRFNLYEC-IP--GHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       369 ~~v~~~~~~l~l~v~d~-d~--~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      |.+....+.|.++|||. |.  ...+|++||++.|++.++..+
T Consensus        63 f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~  105 (483)
T 3bxj_A           63 FNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGR  105 (483)
T ss_dssp             CC-----------------------------------------
T ss_pred             EecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCC
Confidence            98655567899999994 42  125899999999999998643

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.04  E-value=3.6e-10  Score=130.37  Aligned_cols=104  Identities=30%  Similarity=0.477  Sum_probs=91.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEEeeC--CceEEEEEEEEecCC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVKCYNEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~v~~--~~~~L~i~V~d~~~~  559 (680)
                      +.|.|++.+|++|.+++..+.+||||++++     ...+++|+++ +++||.|||+|.|.+..  ....|.|+|||++..
T Consensus       172 ~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~  251 (674)
T 3pfq_A          172 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT  251 (674)
T ss_dssp             SEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSS
T ss_pred             ceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecccc
Confidence            489999999999999999999999999999     3468899999 99999999999999875  356799999999988


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCCCCCe
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTG  592 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G  592 (680)
                       +|++||++.+++.++.... ...|+.|.....|
T Consensus       252 ~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~~g  284 (674)
T 3pfq_A          252 SRNDFMGSLSFGISELQKAG-VDGWFKLLSQEEG  284 (674)
T ss_dssp             SCCEECCBCCCBTTHHHHCC-EEEEEECBCTTGG
T ss_pred             cccccccccccchhhhccCC-cccceeecccccc
Confidence             8999999999999987654 4799999765444

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.94  E-value=9.1e-10  Score=127.02  Aligned_cols=94  Identities=17%  Similarity=0.356  Sum_probs=81.1

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE-----cceeeeecc-CCCCCCccceeE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-----EELTRRTDA-RPGSDPRWDSMF  367 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~-----~~~~~~T~v-~~t~nP~Wne~f  367 (680)
                      .+.|.|+|.+|++|.++|..|.+                      ||||++.+     .....+|++ ++++||.|||+|
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~s----------------------DPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f  228 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLS----------------------DPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETF  228 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSC----------------------CEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEE
T ss_pred             cceeeeeeecccccCCCCccccc----------------------CcccccccccCccccccccccccccccCCCcccee
Confidence            48999999999999999977654                      99999998     345788998 799999999999


Q ss_pred             EEEEecC--CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCc
Q 005736          368 NMVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDST  410 (680)
Q Consensus       368 ~~~v~~~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~  410 (680)
                      .|.+...  ...|.++|||+|.. .+|++||++.+++.++.....
T Consensus       229 ~f~~~~~~~~~~L~v~v~d~d~~-~~dd~iG~~~i~l~~l~~~~~  272 (674)
T 3pfq_A          229 RFQLKESDKDRRLSVEIWDWDLT-SRNDFMGSLSFGISELQKAGV  272 (674)
T ss_dssp             EEECCSTTTTCEEEEEEEECCSS-SCCEECCBCCCBTTHHHHCCE
T ss_pred             eeecccCCccceeeeEEeecccc-cccccccccccchhhhccCCc
Confidence            9998754  45699999999987 699999999999999865433

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.93  E-value=2.6e-08  Score=86.23  Aligned_cols=108  Identities=9%  Similarity=0.217  Sum_probs=85.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEE----Eee-ecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV----QRT-RTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGD  561 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~T-~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d  561 (680)
                      ..|+|.+.+..--+........||||.|.++...    .+| ..+ +|..|.||+.|.-.+. ....|.|.|++..   .
T Consensus         6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a---~   81 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY-EGRVIQIVLMRAA---E   81 (126)
T ss_dssp             CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC-TTCEEEEEEEEET---T
T ss_pred             ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee-CCEEEEEEEEcCC---C
Confidence            3789998777643322233568999999996532    255 666 9999999999999987 4667999999765   3


Q ss_pred             ceeEEEEEEccccc-----CCCeeeEEEeCCCCCCeEEEEEEEEE
Q 005736          562 ENMGSARVNLEGLV-----EGSVRDIWVPLEKVNTGELRLQIEAT  601 (680)
Q Consensus       562 ~~iG~~~i~L~~l~-----~~~~~~~w~~L~~~~~G~i~l~l~~~  601 (680)
                      ++++.|+|++.+|.     .+...+.|+.|++  +|+|++.++|.
T Consensus        82 ~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMSVQYF  124 (126)
T ss_dssp             EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--SCEEEEEEEEE
T ss_pred             CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEe
Confidence            89999999999988     3457789999997  89999999886

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.80  E-value=1.9e-08  Score=116.65  Aligned_cols=94  Identities=22%  Similarity=0.347  Sum_probs=77.4

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE-C---C--EEEeee-cc--CCCCCeeee-EEEE-EeeCC-ceEEEEEEE
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-G---K--IVQRTR-TA--HSPNHVWNQ-KFEL-DEIGG-GECLMVKCY  554 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-~---~--~~~~T~-~~--~t~nP~wne-~f~f-~v~~~-~~~L~i~V~  554 (680)
                      .+.|.|+|++|++|+.    +.+||||+|.+ |   .  ++++|+ ++  ++.||+||| +|.| .+..+ -..|+|+||
T Consensus       677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~  752 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM  752 (799)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred             eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence            4689999999999974    46899999999 3   1  368999 77  569999999 6999 77654 458999999


Q ss_pred             EecCCCCceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736          555 NEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN  590 (680)
Q Consensus       555 d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  590 (680)
                      |++   +++||++.+||..+..+   .+|++|.+..
T Consensus       753 D~d---~d~iG~~~ipl~~L~~G---~r~v~L~~~~  782 (799)
T 2zkm_X          753 EEG---NKFLGHRIIPINALNSG---YHHLCLHSES  782 (799)
T ss_dssp             ETT---TEEEEEEEEEGGGBCCE---EEEEEEECTT
T ss_pred             EeC---CCccceEeeehhhcCCC---cEEEeccCCC
Confidence            996   79999999999998654   4678887643

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.80  E-value=1.6e-08  Score=117.37  Aligned_cols=105  Identities=24%  Similarity=0.314  Sum_probs=83.7

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------EEEeeecc-C-CCCCeeee-EEEEE-eeCC-ceEEEEEEEE
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-H-SPNHVWNQ-KFELD-EIGG-GECLMVKCYN  555 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~------~~~~T~~~-~-t~nP~wne-~f~f~-v~~~-~~~L~i~V~d  555 (680)
                      ...|.|+|++|++|+.    ..+||||+|.+.+      .+++|+++ + +.||+||| +|.|. +..+ ...|+|+|||
T Consensus       724 ~~~L~V~Visaq~L~~----~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSD----RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCcc----cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            3489999999999975    3589999999943      35799998 5 69999999 69998 6544 5689999999


Q ss_pred             ecCCCCceeEEEEEEcccccCCCeeeEEEeCCCCC-----CeEEEEEEEEE
Q 005736          556 EEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEAT  601 (680)
Q Consensus       556 ~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~~  601 (680)
                      ++   +++||++.+||..|..+.   ++++|.+..     .|.|.+.+.+.
T Consensus       800 ~d---ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l~~atLfv~i~~~  844 (885)
T 3ohm_B          800 EG---GKFVGHRILPVSAIRSGY---HYVCLRNEANQPLCLPALLIYTEAS  844 (885)
T ss_dssp             TT---TEEEEEEEEETTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CC---ccEEeeEEEEHHHcCCCc---eEEEecCCCCCccCceEEEEEEEEE
Confidence            86   799999999999987653   457776643     36677777666

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.79  E-value=5e-08  Score=85.57  Aligned_cols=108  Identities=11%  Similarity=0.204  Sum_probs=85.9

Q ss_pred             cEEEEEEEEeecCCCCC-CCCCCCcEEEEEECCE-E---Eee-ecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCCC
Q 005736          488 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYGKI-V---QRT-RTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFG  560 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~-~~~~~dpyv~v~l~~~-~---~~T-~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~  560 (680)
                      ..|+|.+.+..-.+... .....||||.|.++.. .   .+| ..+ +|..|.||+.|.-.+. ....|.|.|++..   
T Consensus        10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a---   85 (138)
T 2enj_A           10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN-KGRVMQIIVKGKN---   85 (138)
T ss_dssp             CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC-SSCEEEEEEECSS---
T ss_pred             cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE-CCeEEEEEEEcCC---
Confidence            36899998877543322 2346899999999643 3   677 666 8999999999998887 4667999999654   


Q ss_pred             CceeEEEEEEccccc-----CCCeeeEEEeCCCCCCeEEEEEEEEE
Q 005736          561 DENMGSARVNLEGLV-----EGSVRDIWVPLEKVNTGELRLQIEAT  601 (680)
Q Consensus       561 d~~iG~~~i~L~~l~-----~~~~~~~w~~L~~~~~G~i~l~l~~~  601 (680)
                      .+++..|+|++.+|.     .+...+.|+.|++  +|+|++.++|.
T Consensus        86 ~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--~Gkl~v~i~~~  129 (138)
T 2enj_A           86 VDLISETTVELYSLAERCRKNNGKTEIWLELKP--QGRMLMNARYF  129 (138)
T ss_dssp             CSCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--SCEEEEEEEEC
T ss_pred             CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEE
Confidence            389999999999998     3456789999997  89999999986

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.79  E-value=3e-08  Score=114.44  Aligned_cols=105  Identities=17%  Similarity=0.263  Sum_probs=83.3

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------EEEeeecc-C-CCCCeeeeE-EEEE-eeCC-ceEEEEEEE
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-------IVQRTRTA-H-SPNHVWNQK-FELD-EIGG-GECLMVKCY  554 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-------~~~~T~~~-~-t~nP~wne~-f~f~-v~~~-~~~L~i~V~  554 (680)
                      .+.|.|+|++|++|+..    .+||||+|.+.+       .+++|+++ + +.||+|||+ |.|. +..+ -..|+|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            35899999999999753    589999999943       67899998 4 699999998 9998 7654 468999999


Q ss_pred             EecCCCCceeEEEEEEcccccCCCeeeEEEeCCCCCC-----eEEEEEEEEE
Q 005736          555 NEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNT-----GELRLQIEAT  601 (680)
Q Consensus       555 d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~-----G~i~l~l~~~  601 (680)
                      |++   +++||++.++|+.+..+.   ++++|.+...     +.|.+.+...
T Consensus       725 D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~~~atLfv~i~~~  770 (816)
T 3qr0_A          725 EEN---GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPLGLASVFAHIVAK  770 (816)
T ss_dssp             ETT---SCEEEEEEEESTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             ecC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCCCceEEEEEEEEE
Confidence            985   799999999999987653   5677876432     4555555544

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.75  E-value=5.5e-08  Score=112.27  Aligned_cols=82  Identities=22%  Similarity=0.323  Sum_probs=67.9

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-------eeeeecc-C-CCCCCccce
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-------LTRRTDA-R-PGSDPRWDS  365 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-------~~~~T~v-~-~t~nP~Wne  365 (680)
                      +.|.|+|++|++|+...                          .||||+|.+.+       .+++|++ + ++.||+|||
T Consensus       650 ~~L~V~Visaq~L~~~~--------------------------~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE  703 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDKQ--------------------------ISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDE  703 (816)
T ss_dssp             EEEEEEEEEEECCCSSC--------------------------CCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCC
T ss_pred             eEEEEEEEEcccCCCCC--------------------------CCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcC
Confidence            78999999999997531                          39999999863       5678987 5 579999999


Q ss_pred             e-EEEE-EecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          366 M-FNMV-LHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       366 ~-f~~~-v~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      + |.|. +..+ ...|+|+|||+|     |++||++.++|..|..
T Consensus       704 ~~F~F~~v~~pela~Lrf~V~D~d-----ddfiG~~~ipL~~L~~  743 (816)
T 3qr0_A          704 KVFVFKKVVLPDLAVVRIIVSEEN-----GKFIGHRVMPLDGIKP  743 (816)
T ss_dssp             CCEEEEEESCGGGCEEEEEEEETT-----SCEEEEEEEESTTCCC
T ss_pred             ceeEEccccCCCccEEEEEEEecC-----CCeeeEEEEEHHHcCC
Confidence            8 9998 7554 357999999963     7999999999999863

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.73  E-value=4.8e-08  Score=113.40  Aligned_cols=82  Identities=20%  Similarity=0.307  Sum_probs=67.0

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc------eeeeecc-C-CCCCCccce-
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE------LTRRTDA-R-PGSDPRWDS-  365 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~------~~~~T~v-~-~t~nP~Wne-  365 (680)
                      ..|.|+|++|++|+..    .                      .||||+|.+.+      .+++|++ + ++.||+||| 
T Consensus       725 ~~L~V~Visaq~L~~~----~----------------------~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe  778 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----K----------------------VGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEE  778 (885)
T ss_dssp             EEEEEEEEEEESCCSS----C----------------------CCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCC
T ss_pred             eEEEEEEEEeccCccc----C----------------------CCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccc
Confidence            4799999999999753    1                      39999999864      2468887 4 579999999 


Q ss_pred             eEEEE-EecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          366 MFNMV-LHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       366 ~f~~~-v~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      +|.|. |... ...|+|+|||+|     |++||++.+||..|..
T Consensus       779 ~F~F~~V~~pela~Lrf~V~D~d-----ddfiG~~~lpL~~L~~  817 (885)
T 3ohm_B          779 PFDFPKVVLPTLASLRIAAFEEG-----GKFVGHRILPVSAIRS  817 (885)
T ss_dssp             CEEEEEESCGGGCEEEEEEEETT-----TEEEEEEEEETTTCCC
T ss_pred             eeEEeeEEcCCcCEEEEEEEcCC-----ccEEeeEEEEHHHcCC
Confidence            79998 6544 357999999975     7999999999999853

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.71  E-value=7.9e-08  Score=111.56  Aligned_cols=83  Identities=23%  Similarity=0.311  Sum_probs=67.9

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc------eeeeec-c-C-CCCCCccc
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE------LTRRTD-A-R-PGSDPRWD  364 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~------~~~~T~-v-~-~t~nP~Wn  364 (680)
                      .|.|.|+|++|++|+..    .                      .||||+|.+.+      .+++|+ + + ++.||+||
T Consensus       677 ~~~L~V~Visa~~L~~~----~----------------------~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWn  730 (799)
T 2zkm_X          677 ATTLSITVISGQFLSER----S----------------------VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWK  730 (799)
T ss_dssp             CEEEEEEEEEEESCCSS----C----------------------CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCC
T ss_pred             eeeEEEEEEeccccCcc----C----------------------CCcEEEEEEEecCCCcccceeecccccCCCCCCeee
Confidence            47999999999999852    1                      39999999842      357898 6 4 67999999


Q ss_pred             e-eEEE-EEecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          365 S-MFNM-VLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       365 e-~f~~-~v~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      | +|.| .|... ...|+|.|||+|     |++||++.++|..|..
T Consensus       731 Ee~f~F~~v~~~el~~Lr~~V~D~d-----~d~iG~~~ipl~~L~~  771 (799)
T 2zkm_X          731 EEPFVFEKILMPELASLRVAVMEEG-----NKFLGHRIIPINALNS  771 (799)
T ss_dssp             CCCEEEEEESSGGGCEEEEEEEETT-----TEEEEEEEEEGGGBCC
T ss_pred             cceEEEEEEccCCccEEEEEEEEeC-----CCccceEeeehhhcCC
Confidence            9 7999 77654 357999999975     7999999999999953

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.49  E-value=2.9e-06  Score=73.49  Aligned_cols=90  Identities=14%  Similarity=0.288  Sum_probs=67.6

Q ss_pred             CCeEEEEEEccee----eee-cc-CCCCCCccceeEEEEEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCce
Q 005736          338 LTTFVEIELEELT----RRT-DA-RPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTT  411 (680)
Q Consensus       338 ~dpyv~v~~~~~~----~~T-~v-~~t~nP~Wne~f~~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~  411 (680)
                      .||||.+.+....    .+| .. ++|..|+|||+|.-.|++. ..|.|.|++..     .+++..|.+++.+|..+   
T Consensus        27 lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a-----~~fvAn~tV~~edL~~~---   97 (126)
T 1yrk_A           27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAA-----EEPVSEVTVGVSVLAER---   97 (126)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT-CEEEEEEEEET-----TEEEEEEEEEHHHHHHH---
T ss_pred             CCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC-EEEEEEEEcCC-----CCeeeEEEEEHHHHHhh---
Confidence            4999999998543    244 44 5899999999998887764 57888998743     29999999999999632   


Q ss_pred             eeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEEEE
Q 005736          412 FWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLV  452 (680)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~l~  452 (680)
                                    .+..+...+.|+.|+.  .|.+++.+.
T Consensus        98 --------------c~~~~g~~e~WvdLeP--~Gkl~~~i~  122 (126)
T 1yrk_A           98 --------------CKKNNGKAEFWLDLQP--QAKVLMSVQ  122 (126)
T ss_dssp             --------------HHTTTTEEEEEEECBS--SCEEEEEEE
T ss_pred             --------------hccCCCceEEEEeccc--CcEEEEEEE
Confidence                          0112347799998876  688887664

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.38  E-value=1.5e-06  Score=76.22  Aligned_cols=91  Identities=13%  Similarity=0.289  Sum_probs=68.2

Q ss_pred             CCeEEEEEEcce-e---eee-cc-CCCCCCccceeEEEEEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCce
Q 005736          338 LTTFVEIELEEL-T---RRT-DA-RPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTT  411 (680)
Q Consensus       338 ~dpyv~v~~~~~-~---~~T-~v-~~t~nP~Wne~f~~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~  411 (680)
                      .||||.|.+... .   .+| .. ++|..|+|||+|.-.|++. ..|.|.|++.     ..+++..|.+.+.+|..+   
T Consensus        32 lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~-----a~~fVAn~tV~~edL~~~---  102 (138)
T 2enj_A           32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG-RVMQIIVKGK-----NVDLISETTVELYSLAER---  102 (138)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS-CEEEEEEECS-----SCSCCEEEEEESHHHHHH---
T ss_pred             CCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC-eEEEEEEEcC-----CCCeeeEEEEEHHHHHhh---
Confidence            499999999854 2   566 44 5799999999998877664 5688899863     239999999999999632   


Q ss_pred             eeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEEEEE
Q 005736          412 FWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVL  453 (680)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~l~l  453 (680)
                                    .+..+...+.|+.|+.  .|.+++.+.+
T Consensus       103 --------------ck~~~g~~e~WvdLeP--~Gkl~v~i~~  128 (138)
T 2enj_A          103 --------------CRKNNGKTEIWLELKP--QGRMLMNARY  128 (138)
T ss_dssp             --------------HHHTTTCEEEEEECBS--SCEEEEEEEE
T ss_pred             --------------hccCCCceEEEEeccc--CcEEEEEEEE
Confidence                          0111346789998876  6899977755

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=85.10  E-value=10  Score=36.17  Aligned_cols=54  Identities=9%  Similarity=-0.006  Sum_probs=40.7

Q ss_pred             EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-----CCceeEEEEEEccc
Q 005736          520 IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-----GDENMGSARVNLEG  573 (680)
Q Consensus       520 ~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~-----~d~~iG~~~i~L~~  573 (680)
                      ..++|.+. .+.+|.|+|++.+.++.   ....|.|++++....     .+..+|.+.+||-+
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            46788888 99999999999999885   367899999876542     12466777666653

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=83.16  E-value=5.5  Score=46.69  Aligned_cols=96  Identities=20%  Similarity=0.254  Sum_probs=66.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCE----EEeeecc-CCCCCeeeeEEEEEee--C--CceEEEEEEEEec
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEI--G--GGECLMVKCYNEE  557 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~~----~~~T~~~-~t~nP~wne~f~f~v~--~--~~~~L~i~V~d~~  557 (680)
                      .++|+|.++.++...   ...+-||++.+  |++    ...|+.+ ...+|.|||.+.|.+.  +  ....|.|+||+..
T Consensus       218 ~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~  294 (940)
T 2wxf_A          218 PFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVV  294 (940)
T ss_dssp             EEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC
T ss_pred             ceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEec
Confidence            799999999998653   34577887776  543    4456666 6788999999999875  2  3789999999963


Q ss_pred             CC-------------CCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEE
Q 005736          558 IF-------------GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQI  598 (680)
Q Consensus       558 ~~-------------~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l  598 (680)
                      ..             .+..+|.++++|-+...        .|   .+|...+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~--------~l---~~G~~~l~l  337 (940)
T 2wxf_A          295 EKAKKARSTKKKSKKADCPIAWANLMLFDYKD--------QL---KTGERCLYM  337 (940)
T ss_dssp             ----------------CEEEEEEEEESBCTTS--------BB---CCEEEEEEC
T ss_pred             CCccCccccccccccccceEEEEeeeEECCcC--------cc---ccCCEEEEE
Confidence            21             23488988888876432        11   257777766

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=82.41  E-value=15  Score=34.94  Aligned_cols=54  Identities=15%  Similarity=0.204  Sum_probs=39.6

Q ss_pred             eeeecc-CCCCCCccceeEEEEEecC---CCeEEEEEEEeCCCCC---CCceeEEEEEecc
Q 005736          350 TRRTDA-RPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHV---KYDYLTSCEVKMK  403 (680)
Q Consensus       350 ~~~T~v-~~t~nP~Wne~f~~~v~~~---~~~l~l~v~d~d~~~~---~d~~lG~~~i~l~  403 (680)
                      ..+|.+ ..+.+|.|+|++.+.+...   ...|.|++++......   .+..+|.+.+||-
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            456677 7899999999999988753   3479999987543211   2357898888874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	680
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	1e-20
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	1e-04
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-17
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-04
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	9e-16
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	0.002
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	3e-15
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	9e-06
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	4e-15
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	6e-04
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	9e-15
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	0.002
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-13
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-04
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-13
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	4e-13
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	2e-04
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	5e-11
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-10
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	8e-09
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-08
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	3e-08
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	5e-08
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	6e-08
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	5e-07
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	5e-07
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-07

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.9 bits (212), Expect = 1e-20
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 486 TGRKINVTVVEGKDLMP---KDKSGKCDPYVKLQYGKIVQRTRTAH----SPNHVWNQKF 538
           +  K  V V+    +      D     DPYV+L         +         N VWN+ F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 539 ELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQ 597
           E          L +   +     DE +G+A   +  +  G  +++     +V    L + 
Sbjct: 61  EFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 120

Query: 598 IE 599
           +E
Sbjct: 121 LE 122

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 621 IELVIVEARDL---VAADLRGTSDPYVKVQYGDLKKRTK 656
             +V++ A  +      D+  T DPYV++         K
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRK 43

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 77.5 bits (190), Expect = 1e-17
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 478 GSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH--VWN 535
           GSS      G  + V +V  K L   D     DPYV+L      Q++  A        WN
Sbjct: 1   GSSGSSGPHG-TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWN 59

Query: 536 QKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLV-EGSVRDIWVPLEK--VNT 591
           + F      G   L  K +++++   D+ +G A + LE +  EGS+      + K     
Sbjct: 60  ETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYK 119

Query: 592 GELRLQIE 599
           GE+ + + 
Sbjct: 120 GEIWVALS 127

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 608 GSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
           GS G +    +G +E+V+V A+ L  AD     DPYV++      +++ 
Sbjct: 1   GSSGSS--GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSN 47

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 9e-16
 Identities = 18/128 (14%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGE 547
           ++ +TV+  K    K       PYV++      ++T    ++ +  W Q   +  +    
Sbjct: 7   QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVI-VTPVS 65

Query: 548 CLMVKCYNEEIFG-DENMGSARVNLEGLVE---GSVRDIWVPLE-------KVNTGELRL 596
            L  + ++ +    D  +G+A +++   ++     + ++ V L+           G+L +
Sbjct: 66  KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSI 125

Query: 597 QIEATRVD 604
            ++  +++
Sbjct: 126 CLDGLQLE 133

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 8/54 (14%), Positives = 19/54 (35%)

Query: 616 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLSGHIQNS 669
           +    +++ ++ A+            PYV+V      K+T+      S   +  
Sbjct: 3   TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQP 56

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 3e-15
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPN-HVWNQKFELDEIGGGE 547
            + V V++  DL+  D SGK DP+  L+ G    +T T +      WN+ F        +
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 66

Query: 548 CLMVKCYNEE-IFGDENMGSARVNLEGLVEGSVRDI---WVPLEKVNTGELRLQIE 599
            L V  ++E+     + +G   + L  + +G           LE+   G + L+++
Sbjct: 67  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 122

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 9e-06
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKLTVACLSGHIQ 667
           G +++ +++A DL+AAD  G SDP+  ++ G+ + +T      L+    
Sbjct: 6   GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWN 54

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.1 bits (171), Expect = 4e-15
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 483 ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAH-SPNHVWNQ 536
                  + V V + K+L+P D +G  DPYVKL+       +  Q+T+T   S N  WN+
Sbjct: 10  AHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNE 69

Query: 537 KFELD--EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 593
            F     E      L V+ ++ ++   ++ MGS    +  L +  V D W  L     GE
Sbjct: 70  TFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEGE 128

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 621 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
           + +V+ +A++LV  D  G SDPYVK++     K   
Sbjct: 17  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSES 52

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.4 bits (169), Expect = 9e-15
 Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 21/140 (15%)

Query: 492 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMV 551
           V V + K    ++K    + YV L+   +   T         W Q F  +       L V
Sbjct: 6   VGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTV 62

Query: 552 KCYNEEIFGDENMGSARVNLEGLV--EGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGS 609
           + +N+ +  D  +G+  + L  +          W+ L+                     +
Sbjct: 63  EVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS----------------QAIMA 106

Query: 610 RGQNIGSGNGWIELVIVEAR 629
             +  G+ +     ++++A 
Sbjct: 107 DSEICGTKDPTFHRILLDAH 126

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 3/32 (9%)

Query: 625 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTK 656
           + +A+   A   +   + YV ++  ++K  T 
Sbjct: 8   VKKAKFDGA---QEKFNTYVTLKVQNVKSTTI 36

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.7 bits (162), Expect = 1e-13
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 488 RKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTAH---SPNHVWNQKFELD 541
            ++ V +++  +L   D  G  DPYVK   L   K    T+      +P       F++ 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 542 EIG-GGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 587
               GG+ L++  Y+ + F   + +G  +V +  +  G V + W  L+
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 14/74 (18%)

Query: 585 PLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYV 644
           P E+   G+L+  ++                  N  + + I++A +L A D+ GTSDPYV
Sbjct: 14  PKEEEKLGKLQYSLDYD--------------FQNNQLLVGIIQAAELPALDMGGTSDPYV 59

Query: 645 KVQYGDLKKRTKLT 658
           KV     KK+   T
Sbjct: 60  KVFLLPDKKKKFET 73

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (159), Expect = 2e-13
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 14/117 (11%)

Query: 484 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKL-----QYGKIVQRTRTA-HSPNHVWNQK 537
            + G ++ VT++  KDL  ++     +PYVK+     +  K  +RT+T   +    WNQ 
Sbjct: 10  DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 69

Query: 538 FELDEIGGGE----CLMVKCYNEEIFG---DENMGSARVNLEGLVEGSVRDIWVPLE 587
           F    +   E     L +  +++        E +G   + LE  +       W  L+
Sbjct: 70  FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQ 125

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.9 bits (157), Expect = 4e-13
 Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 21/138 (15%)

Query: 472 SQQSLSGSSNF-ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ-------------- 516
           +   ++G     I+     + + +++ ++L+P+D +G  DP+VK+               
Sbjct: 1   ASHPITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNA 60

Query: 517 YGKIVQRTRTAH-SPNHVWNQKFELDEIGGGEC----LMVKCYNEEIFG-DENMGSARVN 570
             +  +RT+    S N  WNQ      I   +     L V  ++ + F  ++ +G   ++
Sbjct: 61  SAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLID 120

Query: 571 LEGLVEGSVRDIWVPLEK 588
           L           W PL++
Sbjct: 121 LSSTSHLDNTPRWYPLKE 138

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 16/80 (20%)

Query: 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD 650
           TGE++LQI                    G + + I++AR+LV  D  G SDP+VKV    
Sbjct: 6   TGEIQLQINYDL----------------GNLIIHILQARNLVPRDNNGYSDPFVKVYLLP 49

Query: 651 LKKRTKLTVACLSGHIQNSK 670
            + +  +     + + + +K
Sbjct: 50  GRGQVMVVQNASAEYKRRTK 69

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 58.7 bits (141), Expect = 5e-11
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 489 KINVTVVEGKDLMPKD-----------KSGKCDPYVKLQYGKI-VQRTRTAH-SPNHVWN 535
            + + + E   L P             ++   DPY+ L      + +T T   + +  W+
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 536 QKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGS--VRDIWVPLEKVNTGE 593
            +F  D   G +  +   ++  I  D+ + +  +  E L++      + W+ LE    G+
Sbjct: 67  DEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGK 124

Query: 594 LRLQIEAT 601
           + + I+ +
Sbjct: 125 VYVIIDLS 132

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.3 bits (135), Expect = 3e-10
 Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 14/120 (11%)

Query: 488 RKINVTVVEGKDL--MPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP--NHVWNQKF 538
            ++ V ++ G+ L  + K+K+   DP V ++          ++T    +   N  W+ +F
Sbjct: 4   ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63

Query: 539 ELD-EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRL 596
           E +  +     +     + +    ++ +G + +    L +G      V L   N  +   
Sbjct: 64  EFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPS 120

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.1 bits (124), Expect = 8e-09
 Identities = 11/118 (9%), Positives = 37/118 (31%), Gaps = 11/118 (9%)

Query: 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSPNHV-WNQKFELD- 541
           +I+    E   L  + +     P+  ++          +         +  W   F+   
Sbjct: 6   RISFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI 63

Query: 542 EIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 599
             G    +++    E+   +  +G + +           + W+ L+     ++ + ++
Sbjct: 64  YEGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMCVQ 119

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.3 bits (122), Expect = 2e-08
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA---HSPNHVWNQKFE 539
           T   + V V++ + L   D SG  DPYVK+      K + + +T     +PN V+N+ F 
Sbjct: 13  TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV 72

Query: 540 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEG 577
            D   E      +     + E    +E +G   +       G
Sbjct: 73  FDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSG 114

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 488 RKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTAH-SPNHVWNQKFELD-- 541
            ++ V +++  DL  KD +G  DPYVK   L   K   +T+    + N ++N+ F+    
Sbjct: 18  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77

Query: 542 -EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLV--EGSVRDIWVPLEK 588
                   L    Y+ + F   + +G   ++    +  +   R +W  + +
Sbjct: 78  LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.2 bits (119), Expect = 5e-08
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH------SPNHVWNQKFE 539
           T   + VT+++  +L   D +G  DPYVK       +R +         + N  +N+   
Sbjct: 18  TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77

Query: 540 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPL 586
            D   E      L +   + +  G +E +G  RV  E   +   R+ W  +
Sbjct: 78  FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPE-AADPHGREHWAEM 127

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 6e-08
 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 17/133 (12%)

Query: 470 SGSQQSLSGS-----SNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY----GKI 520
           SGS  S + +              ++ VT +E       +  G CD YV+       G +
Sbjct: 3   SGSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSV 59

Query: 521 VQRTRTAHSPNH-VWNQKFELD---EIGGGECLMVKCYNEEIFGDEN-MGSARVNLEGLV 575
             +T       H  W +   L    E      L +     + F   +  G  R+ L+G  
Sbjct: 60  EAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS 119

Query: 576 EGSVRDIWVPLEK 588
                  W  L+ 
Sbjct: 120 VPLGAAQWGELKT 132

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.5 bits (112), Expect = 5e-07
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 12/113 (10%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ-----YGKIVQRTRTA-HSPNHVWNQKFE 539
               + V ++    L   D +G  DP+VKL        K   +T+    + N  +N++F 
Sbjct: 13  QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFF 72

Query: 540 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEK 588
            D        + L +  ++ +I   ++ +G  ++ +     G     W    K
Sbjct: 73  YDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLK 123

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 5e-07
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 488 RKINVTVVEGKDLMPKDKSGK-CDPYVKLQY---GKIVQRTRTAHSP-NHVWNQKFELDE 542
           +   V + E + L   D+     DPY+K+      K   +TR      +  +++ F    
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 543 IGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGL 574
           I   +     L     + + F  D+ +G   + L G+
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.5 bits (112), Expect = 5e-07
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 10/102 (9%)

Query: 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRT---AHSPNHVWNQKFE 539
           T  K+ V ++E K+L   D  G  DPYVK+     GK +++ +T    ++ N  +N+ F 
Sbjct: 23  TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 82

Query: 540 L---DEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEG 577
                E      ++V   + +  G ++ +G   V        
Sbjct: 83  FEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	680
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.8
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.78
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.78
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.77
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.76
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.74
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.73
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.72
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.7
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.7
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.68
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.68
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.67
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.67
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.67
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.65
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.63
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.62
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.61
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.61
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.6
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.58
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.58
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.58
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.58
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.57
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.54
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.54
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.5
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.5
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.5
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.49
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.48
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.47
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.44
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.44
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.39
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.36
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.18
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.09
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	92.03
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	81.22

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.5e-19  Score=160.85  Aligned_cols=113  Identities=24%  Similarity=0.353  Sum_probs=101.8

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCcee
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM  564 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~i  564 (680)
                      -|.|+|+|++|+||+.++..|.+||||+++++++.++|+++ ++.||.|||+|.|.+.+....|.|+|||++.. +|++|
T Consensus         5 ~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~~l   84 (126)
T d2ep6a1           5 VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFL   84 (126)
T ss_dssp             SEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEEC
T ss_pred             cEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcceE
Confidence            36999999999999999999999999999999999999999 99999999999999988788999999999988 78999


Q ss_pred             EEEEEEcccccCCCeeeEEEeCCC-----CCCeEEEEEEEEE
Q 005736          565 GSARVNLEGLVEGSVRDIWVPLEK-----VNTGELRLQIEAT  601 (680)
Q Consensus       565 G~~~i~L~~l~~~~~~~~w~~L~~-----~~~G~i~l~l~~~  601 (680)
                      |++.++|+++..+.  .+|+.|..     ..+|+|++++++.
T Consensus        85 G~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          85 GKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             CBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEE
Confidence            99999999987654  47888754     3469999999876

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.4e-19  Score=156.38  Aligned_cols=93  Identities=18%  Similarity=0.363  Sum_probs=84.6

Q ss_pred             cCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEE
Q 005736          293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVL  371 (680)
Q Consensus       293 ~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v  371 (680)
                      +.|+|+|+|++|++|++.|..|.+                      ||||++.++++.++|++ +++.||.|||+|.|.+
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~----------------------Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v   61 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKS----------------------DPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI   61 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCC----------------------CEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCc----------------------CeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEE
Confidence            359999999999999999877653                      99999999999999998 7899999999999999


Q ss_pred             ecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCC
Q 005736          372 HEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  408 (680)
Q Consensus       372 ~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~  408 (680)
                      .+..+.|.|+|||+|.. ++|++||++.++|+++..+
T Consensus        62 ~~~~~~L~i~V~d~~~~-~~d~~lG~~~i~l~~l~~~   97 (126)
T d2ep6a1          62 KDIHDVLEVTVFDEDGD-KPPDFLGKVAIPLLSIRDG   97 (126)
T ss_dssp             SCTTCEEEEEEEEEETT-EEEEECCBCEEEGGGCCSS
T ss_pred             eccCceeEEEEEEccCC-cCcceEEEEEEEHHHCCCC
Confidence            98888999999999986 5899999999999998643

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.1e-19  Score=157.47  Aligned_cols=115  Identities=23%  Similarity=0.342  Sum_probs=102.5

Q ss_pred             CcEEEEEEEEeecCCCCC---CCCCCCcEEEEEECC---EEEeeecc-CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecC
Q 005736          487 GRKINVTVVEGKDLMPKD---KSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEI  558 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~---~~~~~dpyv~v~l~~---~~~~T~~~-~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~  558 (680)
                      .+.|+|+|++|+||+...   ..+.+||||++.++.   +.++|+++ ++.||.|||+|.|.+.+. ...|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            358999999999998643   357899999999954   78899999 999999999999999875 5689999999987


Q ss_pred             CCCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEEEEE
Q 005736          559 FGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT  601 (680)
Q Consensus       559 ~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l~~~  601 (680)
                      .+|++||++.++|+++..+.....||+|.+.++|++++++++.
T Consensus        82 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~  124 (126)
T d1rlwa_          82 VMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA  124 (126)
T ss_dssp             SCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECC
T ss_pred             CCCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEE
Confidence            7899999999999999888889999999998889999999875

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.77  E-value=9.2e-19  Score=157.95  Aligned_cols=118  Identities=24%  Similarity=0.351  Sum_probs=104.1

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc--CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCce
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDEN  563 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~--~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~  563 (680)
                      .|.|+|+|++|++|+..+..+.+||||+++++.+.++|+++  ++.||.|||+|.|.+.+....|.|+|||++.. +|++
T Consensus         9 ~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~   88 (136)
T d1wfja_           9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDA   88 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCC
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCCCCCE
Confidence            36999999999999999988999999999999988889887  58999999999999998777899999999988 8899


Q ss_pred             eEEEEEEcccccC-CCeeeEEEeCCCCC--CeEEEEEEEEEEec
Q 005736          564 MGSARVNLEGLVE-GSVRDIWVPLEKVN--TGELRLQIEATRVD  604 (680)
Q Consensus       564 iG~~~i~L~~l~~-~~~~~~w~~L~~~~--~G~i~l~l~~~~~~  604 (680)
                      ||++.|+|.++.. +.....|++|...+  .|+|++++.|.|.+
T Consensus        89 iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~~  132 (136)
T d1wfja_          89 VGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             SEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             EEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeCC
Confidence            9999999999764 45567899986433  59999999998643

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=2.1e-18  Score=155.61  Aligned_cols=120  Identities=18%  Similarity=0.304  Sum_probs=98.6

Q ss_pred             CcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-C-CCCCCccceeEEE
Q 005736          292 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-R-PGSDPRWDSMFNM  369 (680)
Q Consensus       292 ~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~-~t~nP~Wne~f~~  369 (680)
                      .+.|+|+|+|++|++|+..|..|.+                      ||||+++++.+.++|++ + ++.||+|||+|.|
T Consensus         7 ~p~G~L~V~v~~a~~L~~~d~~g~~----------------------Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f   64 (136)
T d1wfja_           7 GPHGTLEVVLVSAKGLEDADFLNNM----------------------DPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIF   64 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSS----------------------CCCEEEESSSCEEECCCCTTCCSSCEEEEEEEE
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCC----------------------CccEEEEEeeeeEEEEEEecCCCcEEEeeEEEE
Confidence            3469999999999999999876653                      99999999998888887 5 5899999999999


Q ss_pred             EEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccC--CCceeeE
Q 005736          370 VLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFE--GVNSGEL  447 (680)
Q Consensus       370 ~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~--~~~~G~l  447 (680)
                      .+.+....|+|+|||+|.. .+|++||+++|+|.++...                     +.....|+++.  ....|+|
T Consensus        65 ~v~~~~~~L~v~V~d~d~~-~~d~~iG~~~i~L~~l~~~---------------------~~~~~~~~~l~~~~~~~G~i  122 (136)
T d1wfja_          65 TVSEGTTELKAKIFDKDVG-TEDDAVGEATIPLEPVFVE---------------------GSIPPTAYNVVKDEEYKGEI  122 (136)
T ss_dssp             EEESSCCEEEEEECCSSSC-TTTCCSEEEEEESHHHHHH---------------------SEEEEEEEEEEETTEEEEEE
T ss_pred             EEcCccceEEEEEEEecCC-CCCCEEEEEEEEhHHhccc---------------------CCcCcEEEEecCCCccCEEE
Confidence            9998877899999999986 5899999999999988532                     12334566553  3346999


Q ss_pred             EEEEEEee
Q 005736          448 TVRLVLKE  455 (680)
Q Consensus       448 ~~~l~l~~  455 (680)
                      ++++.+.+
T Consensus       123 ~l~l~~~p  130 (136)
T d1wfja_         123 WVALSFKP  130 (136)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            99998765

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=6.4e-18  Score=151.51  Aligned_cols=104  Identities=30%  Similarity=0.466  Sum_probs=91.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEEeeCC--ceEEEEEEEEecCC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~~  559 (680)
                      +.|.|+|++|+||+.++..+.+||||++++     +..+++|+++ +|.||.|||.|.|.+...  ...|.|+|||++..
T Consensus        15 ~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~   94 (132)
T d1a25a_          15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT   94 (132)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred             CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCCC
Confidence            489999999999999999999999999999     4568899999 999999999999998763  56899999999988


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCCCCCe
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTG  592 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G  592 (680)
                       +|++||++.|+|.++..+ ..+.||+|.+.+.|
T Consensus        95 ~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g  127 (132)
T d1a25a_          95 SRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG  127 (132)
T ss_dssp             SCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred             CCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCC
Confidence             889999999999998755 35789999875444

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.73  E-value=2.5e-17  Score=148.22  Aligned_cols=113  Identities=19%  Similarity=0.388  Sum_probs=97.5

Q ss_pred             CcEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEECCEE-Eeeecc-CCCCCeeeeEEEEEeeCCceEEEEEE
Q 005736          487 GRKINVTVVEGKDLMPKD-----------KSGKCDPYVKLQYGKIV-QRTRTA-HSPNHVWNQKFELDEIGGGECLMVKC  553 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~-----------~~~~~dpyv~v~l~~~~-~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V  553 (680)
                      .|.|+|+|++|++|++.+           ..+.+||||+++++++. .+|+++ ++.||.|||+|.|.+.+ ...|.|+|
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V   83 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEEE
Confidence            369999999999998753           35778999999998855 588898 99999999999999874 46799999


Q ss_pred             EEecCC-CCceeEEEEEEcccccCC--CeeeEEEeCCCCCCeEEEEEEEEEE
Q 005736          554 YNEEIF-GDENMGSARVNLEGLVEG--SVRDIWVPLEKVNTGELRLQIEATR  602 (680)
Q Consensus       554 ~d~~~~-~d~~iG~~~i~L~~l~~~--~~~~~w~~L~~~~~G~i~l~l~~~~  602 (680)
                      ||++.. +|++||.+.|+|+++..+  ...+.|++|++  +|++++++++.+
T Consensus        84 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p--~G~v~l~v~~~~  133 (136)
T d1gmia_          84 FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSG  133 (136)
T ss_dssp             EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEE
T ss_pred             EEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC--CcEEEEEEEEEe
Confidence            999988 899999999999998754  35679999986  799999998874

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=4.5e-17  Score=148.00  Aligned_cols=101  Identities=26%  Similarity=0.459  Sum_probs=91.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEecCC-
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~~-  559 (680)
                      +.|.|+|++|+||+.++..+.+||||++++   +++.++|+++ ++.||.|||+|.|.+..   ....|.|+|||++.. 
T Consensus        34 ~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~  113 (143)
T d1rsya_          34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS  113 (143)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS
T ss_pred             CEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCC
Confidence            489999999999999998899999999999   5577899999 99999999999998764   357899999999988 


Q ss_pred             CCceeEEEEEEcccccCCCeeeEEEeCCC
Q 005736          560 GDENMGSARVNLEGLVEGSVRDIWVPLEK  588 (680)
Q Consensus       560 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  588 (680)
                      ++++||++.|+|.++..+....+||+|+.
T Consensus       114 ~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         114 KHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            78899999999999988888889999975

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.2e-17  Score=144.84  Aligned_cols=114  Identities=18%  Similarity=0.326  Sum_probs=95.2

Q ss_pred             CeEEEEEEEecCCCCCCC---CCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc---eeeeecc-CCCCCCcccee
Q 005736          294 GGIVYVRVISASKLSRSS---LRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE---LTRRTDA-RPGSDPRWDSM  366 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d---~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~---~~~~T~v-~~t~nP~Wne~  366 (680)
                      .+.|+|+|++|+||+...   ..|.                      +||||++.++.   +.++|++ +++.||.|||+
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~----------------------~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~   59 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDT----------------------PDPYVELFISTTPDSRKRTRHFNNDINPVWNET   59 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCC----------------------CCEEEEEECTTSTTCCEECCCCTTCSSCEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCC----------------------CCcEEEEEECCcccceeEeeecCCCccceecee
Confidence            378999999999999753   2343                      49999999974   6778888 79999999999


Q ss_pred             EEEEEecC-CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCcee
Q 005736          367 FNMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSG  445 (680)
Q Consensus       367 f~~~v~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G  445 (680)
                      |.|.+.+. ...|.|+|||+|.  .+|++||++.++|+++..                      |+..+.|++|.+...|
T Consensus        60 f~f~i~~~~~~~L~v~V~d~d~--~~d~~lG~~~i~L~~l~~----------------------~~~~~~~~~L~~~~~g  115 (126)
T d1rlwa_          60 FEFILDPNQENVLEITLMDANY--VMDETLGTATFTVSSMKV----------------------GEKKEVPFIFNQVTEM  115 (126)
T ss_dssp             EEEEECTTSCCEEEEEEEECCS--SCCEEEEEEEEEGGGSCT----------------------TCEEEEEEEETTTEEE
T ss_pred             eeecccCcccCcEEEEEEECCC--CCCCeEEEEEEEHHHccC----------------------CCeEEEEEEccCCCeE
Confidence            99999876 4679999999986  479999999999999853                      3466789999988889


Q ss_pred             eEEEEEEE
Q 005736          446 ELTVRLVL  453 (680)
Q Consensus       446 ~l~~~l~l  453 (680)
                      ++++++.+
T Consensus       116 ~i~~~l~~  123 (126)
T d1rlwa_         116 VLEMSLEV  123 (126)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEE
Confidence            88887754

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.70  E-value=9.9e-17  Score=144.24  Aligned_cols=125  Identities=14%  Similarity=0.314  Sum_probs=96.4

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCC--cccccccCCCCccccccCCCCCCeEEEEEEccee-eeecc-CCCCCCccceeEEE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSP--SRRQQNYSADSSLEEHYEDKDLTTFVEIELEELT-RRTDA-RPGSDPRWDSMFNM  369 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~--~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~-~~T~v-~~t~nP~Wne~f~~  369 (680)
                      .|.|+|+|.+|++|++.+..+..  .++..             ...+||||++.++++. .+|++ +++.||.|||+|+|
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~-------------~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f   71 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQ-------------TFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVT   71 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCC-------------CCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCC-------------CCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEE
Confidence            39999999999999987532110  00000             1235999999999865 57887 78999999999999


Q ss_pred             EEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEE
Q 005736          370 VLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTV  449 (680)
Q Consensus       370 ~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~  449 (680)
                      .+.+ .+.|.|+|||++.. .+|++||++.|+|+++..+.                    +...+.|++|++  .|++++
T Consensus        72 ~v~~-~~~l~i~V~d~~~~-~~d~~iG~~~i~l~~l~~~~--------------------~~~~~~w~~L~p--~G~v~l  127 (136)
T d1gmia_          72 DVCN-GRKIELAVFHDAPI-GYDDFVANCTIQFEELLQNG--------------------SRHFEDWIDLEP--EGKVYV  127 (136)
T ss_dssp             EEEE-ECEEEEEEEECCSS-SSCEEEEEEEEEHHHHTSTT--------------------CSEEEEEEECBS--SCEEEE
T ss_pred             EEec-CCceEEEEEEecCC-CCceeEEEEEEEHHHhhhcC--------------------CcceeEEEeCCC--CcEEEE
Confidence            9975 36799999999886 68999999999999986542                    134578999974  699998


Q ss_pred             EEEEee
Q 005736          450 RLVLKE  455 (680)
Q Consensus       450 ~l~l~~  455 (680)
                      .+.+++
T Consensus       128 ~v~~~~  133 (136)
T d1gmia_         128 IIDLSG  133 (136)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            887754

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.6e-16  Score=142.15  Aligned_cols=114  Identities=15%  Similarity=0.228  Sum_probs=93.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCC-CCceeE
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  565 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~-~d~~iG  565 (680)
                      +.|.|+|++|++++..+..+.+||||++.++++.++|+++ ++.||.|||.|.|.+.+ .+.|.|+|||++.+ +|++||
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~iG   84 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLLG   84 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEEE
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceEE
Confidence            4899999999999988888899999999999999999999 99999999999999874 56899999999988 899999


Q ss_pred             EEEEEcccccC---CC--eeeEEEeCCCC-----CCeEEEEEEEEEE
Q 005736          566 SARVNLEGLVE---GS--VRDIWVPLEKV-----NTGELRLQIEATR  602 (680)
Q Consensus       566 ~~~i~L~~l~~---~~--~~~~w~~L~~~-----~~G~i~l~l~~~~  602 (680)
                      ++.++|.++..   +.  ....|+.|.+.     ..|+|.+.+.+..
T Consensus        85 ~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          85 TAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             EEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             EEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence            99999998753   22  23344544432     2489888886653

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=4.8e-17  Score=147.67  Aligned_cols=103  Identities=23%  Similarity=0.452  Sum_probs=89.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------EEEeeecc-CCCCCeeeeEEEEEeeC----CceE
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK--------------IVQRTRTA-HSPNHVWNQKFELDEIG----GGEC  548 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~--------------~~~~T~~~-~t~nP~wne~f~f~v~~----~~~~  548 (680)
                      +.|.|+|++|+||+.++..+.+||||++++..              ++++|+++ ++.||.|||.|.|.+..    ....
T Consensus        18 ~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~   97 (142)
T d1rh8a_          18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT   97 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCE
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCE
Confidence            48999999999999999999999999999821              23679999 99999999999998543    3668


Q ss_pred             EEEEEEEecCC-CCceeEEEEEEcccccCCCeeeEEEeCCCCC
Q 005736          549 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  590 (680)
Q Consensus       549 L~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  590 (680)
                      |.|+|||++.. +|++||++.|+|.++..+.....||+|++..
T Consensus        98 L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          98 LEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            99999999988 8899999999999998777788999998753

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.6e-16  Score=141.81  Aligned_cols=101  Identities=24%  Similarity=0.372  Sum_probs=86.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC-
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~-  559 (680)
                      +.|.|+|++|+||+.++..+.+||||++++   +.+.++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.. 
T Consensus        18 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~   97 (130)
T d1dqva1          18 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS   97 (130)
T ss_dssp             CEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSS
T ss_pred             CEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCCC
Confidence            489999999999999998899999999999   4577999999 999999999999998653   56799999999987 


Q ss_pred             CCceeEEEEEEccc-ccC-CCeeeEEEeCCC
Q 005736          560 GDENMGSARVNLEG-LVE-GSVRDIWVPLEK  588 (680)
Q Consensus       560 ~d~~iG~~~i~L~~-l~~-~~~~~~w~~L~~  588 (680)
                      +|++||++.|++.. +.. ......|++|.+
T Consensus        98 ~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          98 RHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             CCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             CCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            89999999998654 333 234557999986

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=3e-16  Score=138.80  Aligned_cols=98  Identities=19%  Similarity=0.291  Sum_probs=86.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEeeeccCCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCceeEEE
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSA  567 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~~iG~~  567 (680)
                      +.|.|+|.+|++|..++   ..||||++.+++++.+|.++++.||.|||.|.|.+.++...|.|+|||++..+|++||++
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~~d~~lG~~   78 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTV   78 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECCSSCEEEEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEecCCCCeEEEEEEEeeccccceEEEEEEeCCCcCCcceEEE
Confidence            47999999999998865   579999999999999998884459999999999999888889999999987789999999


Q ss_pred             EEEcccccC--CCeeeEEEeCCC
Q 005736          568 RVNLEGLVE--GSVRDIWVPLEK  588 (680)
Q Consensus       568 ~i~L~~l~~--~~~~~~w~~L~~  588 (680)
                      .|+|+++..  .....+||+|..
T Consensus        79 ~I~L~~l~~~~~~~~~~W~~L~~  101 (128)
T d2cjta1          79 WIPLRTIRQSNEEGPGEWLTLDS  101 (128)
T ss_dssp             EEEGGGSCBCSSCCCCEEEECBC
T ss_pred             EEEehhhccCCCCCCCeeEECCc
Confidence            999999874  334578999965

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=8.4e-17  Score=144.06  Aligned_cols=107  Identities=18%  Similarity=0.324  Sum_probs=89.1

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE-----cceeeeecc-CCCCCCccceeE
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-----EELTRRTDA-RPGSDPRWDSMF  367 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~-----~~~~~~T~v-~~t~nP~Wne~f  367 (680)
                      .|.|.|+|++|++|+++|..|.+                      ||||++.+     +...++|++ +++.||+|||+|
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~----------------------DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f   71 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLS----------------------DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF   71 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCC----------------------CEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEE
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCc----------------------CeEEEEEEccCCCCccccEEeeecCCCCCccceEE
Confidence            48999999999999999876653                      99999998     456788998 799999999999


Q ss_pred             EEEEecC--CCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhhccCceeeeeeccCCCcee
Q 005736          368 NMVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSG  445 (680)
Q Consensus       368 ~~~v~~~--~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G  445 (680)
                      .|.+.+.  ...|.|+|||+|.. .+|++||++.|+|+++...                       ..+.|++|.+.+.|
T Consensus        72 ~f~v~~~~~~~~L~i~V~d~d~~-~~d~~iG~~~i~l~~l~~~-----------------------~~~~W~~L~~~~~g  127 (132)
T d1a25a_          72 RFQLKESDKDRRLSVEIWDWDLT-SRNDFMGSLSFGISELQKA-----------------------GVDGWFKLLSQEEG  127 (132)
T ss_dssp             EEECCSGGGGCEEEEEEEECCSS-SCCEEEEEEEEEHHHHTTC-----------------------CEEEEEECBCHHHH
T ss_pred             EEEeEccccCCEEeEEEEecCCC-CCCcEeEEEEEeHHHcCCC-----------------------CCCeEEECCCCCCC
Confidence            9998764  45799999999986 6899999999999998532                       24568888765555


Q ss_pred             e
Q 005736          446 E  446 (680)
Q Consensus       446 ~  446 (680)
                      +
T Consensus       128 e  128 (132)
T d1a25a_         128 E  128 (132)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.6e-16  Score=136.74  Aligned_cols=99  Identities=24%  Similarity=0.415  Sum_probs=82.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEE-eeC---CceEEEEEEEEec
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEE  557 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~-v~~---~~~~L~i~V~d~~  557 (680)
                      +.|.|+|++|+||+..+..+.+||||++++     +...++|+++ ++.||.|||+|.|. +..   ....|.|+|||++
T Consensus        14 ~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~   93 (125)
T d2bwqa1          14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA   93 (125)
T ss_dssp             TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECC
Confidence            489999999999999988899999999999     2367899999 99999999999997 443   2568999999998


Q ss_pred             CC---CCceeEEEEEEcccccCCCeeeEEEeCC
Q 005736          558 IF---GDENMGSARVNLEGLVEGSVRDIWVPLE  587 (680)
Q Consensus       558 ~~---~d~~iG~~~i~L~~l~~~~~~~~w~~L~  587 (680)
                      ..   ++++||++.++|+++..+.. .+||+|+
T Consensus        94 ~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~  125 (125)
T d2bwqa1          94 RVREEESEFLGEILIELETALLDDE-PHWYKLQ  125 (125)
T ss_dssp             ------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred             CCCCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence            75   45699999999999875543 5799985

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=4.3e-16  Score=137.73  Aligned_cols=86  Identities=14%  Similarity=0.229  Sum_probs=77.4

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeeccCCCCCCccceeEEEEEecC
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEE  374 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v~~t~nP~Wne~f~~~v~~~  374 (680)
                      +.|.|+|.+|++|.+.|.                         .||||++++++++.+|.+.++.||+|||+|.|.+.+.
T Consensus         2 ~~L~V~v~~a~~l~~~~~-------------------------~dpYv~l~~~~~k~~T~~~k~~nP~Wne~f~f~v~~~   56 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQEK-------------------------FNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRL   56 (128)
T ss_dssp             EEEEEEEEEEECSSCGGG-------------------------CEEEEEEEETTEEEECCCEESSSCEEEEEEEEEECCC
T ss_pred             eEEEEEEEEEECCCCCCC-------------------------cCeEEEEEeCCEEEEEEEecCCCCeEEEEEEEeeccc
Confidence            789999999999998762                         3999999999999999985567999999999999998


Q ss_pred             CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          375 TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       375 ~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      .+.|.|+|||+|.  .+|++||++.|+|+++..
T Consensus        57 ~~~L~v~V~d~~~--~~d~~lG~~~I~L~~l~~   87 (128)
T d2cjta1          57 DLGLTVEVWNKGL--IWDTMVGTVWIPLRTIRQ   87 (128)
T ss_dssp             SSEEEEEEEECCS--SCEEEEEEEEEEGGGSCB
T ss_pred             cceEEEEEEeCCC--cCCcceEEEEEEehhhcc
Confidence            8899999999886  479999999999999864

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.9e-16  Score=138.03  Aligned_cols=89  Identities=12%  Similarity=0.240  Sum_probs=78.2

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcceeeeecc-CCCCCCccceeEEEEEe
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDA-RPGSDPRWDSMFNMVLH  372 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~~~~~T~v-~~t~nP~Wne~f~~~v~  372 (680)
                      .+.|.|+|++|++++..+..+.                      +||||++.++++.++|++ +++.||.|||.|+|.+.
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~----------------------~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~   62 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFG----------------------PSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT   62 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCC----------------------CCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC
T ss_pred             ceEEEEEEEEeECCCcCCCCCC----------------------cCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEE
Confidence            4889999999999998775554                      399999999999999999 78999999999999987


Q ss_pred             cCCCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          373 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       373 ~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      + .+.|.|+|||+|.. ++|++||++.++|.++.
T Consensus        63 ~-~~~l~~~V~d~d~~-~~d~~iG~~~i~L~~l~   94 (133)
T d2nq3a1          63 P-VSKLHFRVWSHQTL-KSDVLLGTAALDIYETL   94 (133)
T ss_dssp             T-TCEEEEEEEECCSS-SCCEEEEEEEEEHHHHH
T ss_pred             e-cceeEEEEEEccCC-CCCceEEEEEEEHHHhh
Confidence            5 46899999999986 69999999999999874

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=6.1e-15  Score=131.47  Aligned_cols=109  Identities=18%  Similarity=0.256  Sum_probs=85.6

Q ss_pred             EEEEEEEEeecCCCC--CCCCCCCcEEEEEE-----CCEEEeeecc--CCCCCeeeeEEEEEeeCC-ceEEEEEEEEecC
Q 005736          489 KINVTVVEGKDLMPK--DKSGKCDPYVKLQY-----GKIVQRTRTA--HSPNHVWNQKFELDEIGG-GECLMVKCYNEEI  558 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~--~~~~~~dpyv~v~l-----~~~~~~T~~~--~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~  558 (680)
                      .|+|+|++|++|+..  +.++.+||||++++     +.+.++|+++  ++.||.|||+|+|.+..+ ...|.|+|||++.
T Consensus         5 ~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d~   84 (131)
T d1qasa2           5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDS   84 (131)
T ss_dssp             EEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECCT
T ss_pred             EEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEecC
Confidence            799999999999753  45678999999999     3578899987  557999999999998764 5689999999998


Q ss_pred             C-CCceeEEEEEEcccccCCCeeeEEEeCCCCCC-----eEEEEEEEE
Q 005736          559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKVNT-----GELRLQIEA  600 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~-----G~i~l~l~~  600 (680)
                      . +|++||++.++|+++..+   .+|++|.+...     +.|.+.+++
T Consensus        85 ~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~  129 (131)
T d1qasa2          85 SSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISI  129 (131)
T ss_dssp             TTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEE
Confidence            8 789999999999998643   46889876432     344455544

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=4.8e-15  Score=133.44  Aligned_cols=101  Identities=24%  Similarity=0.295  Sum_probs=78.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~---~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|+||+.++..+.+||||++++  +.   ...+|+++ ++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        15 ~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~   94 (138)
T d1w15a_          15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER   94 (138)
T ss_dssp             TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT
T ss_pred             CEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCC
Confidence            489999999999999998899999999998  32   45689999 999999999999998642   5679999999998


Q ss_pred             C-CCceeEEEEEEccccc------------CCCeeeEEEeCCC
Q 005736          559 F-GDENMGSARVNLEGLV------------EGSVRDIWVPLEK  588 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~------------~~~~~~~w~~L~~  588 (680)
                      . ++++||++.+++....            .+....+|++|.+
T Consensus        95 ~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~~  137 (138)
T d1w15a_          95 GSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD  137 (138)
T ss_dssp             TSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEccc
Confidence            8 8999999999997632            1334567777754

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=8.3e-15  Score=131.71  Aligned_cols=87  Identities=21%  Similarity=0.341  Sum_probs=77.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-----~~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|+||+..+..+.+||||++++     ....++|+++ ++.||.|||+|.|.+...   ...|.|.|||++.
T Consensus        15 ~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~   94 (137)
T d2cm5a1          15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI   94 (137)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             CEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCC
Confidence            489999999999998888899999999998     2356899999 999999999999998753   5689999999988


Q ss_pred             C-CCceeEEEEEEcccc
Q 005736          559 F-GDENMGSARVNLEGL  574 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l  574 (680)
                      . ++++||++.+++.++
T Consensus        95 ~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          95 GKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             SSCCEEEEEEEEETTCC
T ss_pred             CCCCCEEEEEEeCcccc
Confidence            7 899999999999764

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2e-14  Score=129.32  Aligned_cols=99  Identities=18%  Similarity=0.261  Sum_probs=82.2

Q ss_pred             cEEEEEEEEeecCCCCCCCC-CCCcEEEEEE---CCEEEeeecc-CCCCCeeeeEEEEEe-eC---CceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSG-KCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDE-IG---GGECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~-~~dpyv~v~l---~~~~~~T~~~-~t~nP~wne~f~f~v-~~---~~~~L~i~V~d~~~  558 (680)
                      ..|.|+|++|+||+.++..+ .+||||++++   +.+.++|+++ ++.||.|||+|.|.. ..   ....|.|+|||++.
T Consensus        22 ~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~  101 (138)
T d1ugka_          22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR  101 (138)
T ss_dssp             TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS
T ss_pred             CEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCC
Confidence            38999999999999887655 4799999999   5578899999 999999999999974 32   25689999999998


Q ss_pred             C-CCceeEEEEEEcccccC-CCeeeEEEeC
Q 005736          559 F-GDENMGSARVNLEGLVE-GSVRDIWVPL  586 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l~~-~~~~~~w~~L  586 (680)
                      + ++++||++.++|+++.. ......|..+
T Consensus       102 ~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_         102 FSRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             SCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             CCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence            8 89999999999999864 3344455554

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=3.6e-15  Score=135.18  Aligned_cols=96  Identities=19%  Similarity=0.241  Sum_probs=81.0

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE---cceeeeecc-CCCCCCccc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL---EELTRRTDA-RPGSDPRWD  364 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~---~~~~~~T~v-~~t~nP~Wn  364 (680)
                      .+....+.|+|+|++|+||++.+..|.+                      ||||++.+   +....+|++ +++.||+||
T Consensus        28 ~y~~~~~~L~V~V~~a~~L~~~~~~g~~----------------------dpyV~v~l~~~~~~~~kT~~~~~t~~P~wn   85 (143)
T d1rsya_          28 DYDFQNNQLLVGIIQAAELPALDMGGTS----------------------DPYVKVFLLPDKKKKFETKVHRKTLNPVFN   85 (143)
T ss_dssp             EEETTTTEEEEEEEEEESCCCCSTTSCC----------------------CEEEEEEEETTCCSCEECCCCTTCSSCEEE
T ss_pred             EEeCCCCEEEEEEEEccCCCCCCCCCCC----------------------CeEEEEEEcCCCCeeEEEEEeccccCccee
Confidence            3334568999999999999998876653                      99999998   456788988 789999999


Q ss_pred             eeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          365 SMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       365 e~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      |+|.|.+...   ...|.|+|||+|.. .++++||++.|+|+++..
T Consensus        86 e~f~f~i~~~~l~~~~L~i~V~d~d~~-~~~~~iG~~~i~L~~~~~  130 (143)
T d1rsya_          86 EQFTFKVPYSELGGKTLVMAVYDFDRF-SKHDIIGEFKVPMNTVDF  130 (143)
T ss_dssp             EEEEECCCHHHHTTCEEEEEEEECCSS-SCCEEEEEEEEEGGGCCC
T ss_pred             eeeEEEEEeeccCCceEEEEEEEcCCC-CCCcEEEEEEEEchhccC
Confidence            9999988642   46799999999986 589999999999999853

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=2.6e-15  Score=133.80  Aligned_cols=93  Identities=17%  Similarity=0.224  Sum_probs=78.0

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc---ceeeeecc-CCCCCCccc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE---ELTRRTDA-RPGSDPRWD  364 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~---~~~~~T~v-~~t~nP~Wn  364 (680)
                      .+.+..|.|.|+|++|++|+.++..|.+                      ||||++.+.   .+.++|++ +++.||+||
T Consensus        12 ~y~~~~~~L~V~V~~a~~L~~~~~~g~~----------------------dpyv~v~l~~~~~~~~kT~v~~~t~~P~wn   69 (130)
T d1dqva1          12 RYLYGSDQLVVRILQALDLPAKDSNGFS----------------------DPYVKIYLLPDRKKKFQTKVHRKTLNPIFN   69 (130)
T ss_dssp             ECCSSSCEEEEEEEEEECCCCCSTTSCC----------------------CEEEEEECTTSTTSCEECCCCCSCSSCEEE
T ss_pred             EEECCCCEEEEEEEeeeCCccccCCCCc----------------------ceEEEEEEccCCCceEeceeEcCCCCeeee
Confidence            4444569999999999999998876653                      999999984   45788998 789999999


Q ss_pred             eeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccc
Q 005736          365 SMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY  404 (680)
Q Consensus       365 e~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~  404 (680)
                      |+|.|.+...   ...|.|+|||+|.. .+|++||++.|++..
T Consensus        70 e~f~f~v~~~~~~~~~L~v~V~d~~~~-~~d~~iG~~~i~~~~  111 (130)
T d1dqva1          70 ETFQFSVPLAELAQRKLHFSVYDFDRF-SRHDLIGQVVLDNLL  111 (130)
T ss_dssp             EEEEEECCGGGGSSCCCEEEEEECCSS-SCCCEEEEEECCCTT
T ss_pred             eEEEEEEchHHcCCCeEEEEEEEcCCC-CCCceEEEEEECchh
Confidence            9999998653   45799999999986 689999999998654

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-14  Score=131.17  Aligned_cols=99  Identities=19%  Similarity=0.253  Sum_probs=86.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC----CEEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecCC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF  559 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~----~~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~~  559 (680)
                      +.|.|+|++|++|+.   .+.+||||++++.    ...++|+++ ++.||.|||+|.|.+...   ...|.|+|||++..
T Consensus        26 ~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~  102 (138)
T d1wfma_          26 AELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF  102 (138)
T ss_dssp             TEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSS
T ss_pred             CEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeeccc
Confidence            489999999999953   4678999999992    256789999 999999999999998752   57899999999988


Q ss_pred             -CCceeEEEEEEcccccCCCeeeEEEeCCCC
Q 005736          560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKV  589 (680)
Q Consensus       560 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  589 (680)
                       ++++||++.|+|.++......+.|++|...
T Consensus       103 ~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_         103 SRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             CTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             ccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence             889999999999999877778899999874

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=2.2e-14  Score=132.01  Aligned_cols=102  Identities=21%  Similarity=0.331  Sum_probs=86.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---EEEeeecc-CCCCCeeeeEEEEEeeCC---ceEEEEEEEEecC
Q 005736          488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  558 (680)
Q Consensus       488 ~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l--~~---~~~~T~~~-~t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~  558 (680)
                      +.|.|+|++|+||+..+..+.+||||++++  ++   ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        25 ~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~  104 (157)
T d1uowa_          25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK  104 (157)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             CEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCC
Confidence            489999999999999888899999999998  22   35689999 999999999999998753   5689999999998


Q ss_pred             C-CCceeEEEEEEcccc----------c--CCCeeeEEEeCCCC
Q 005736          559 F-GDENMGSARVNLEGL----------V--EGSVRDIWVPLEKV  589 (680)
Q Consensus       559 ~-~d~~iG~~~i~L~~l----------~--~~~~~~~w~~L~~~  589 (680)
                      + ++++||++.|++...          .  ......+|++|+..
T Consensus       105 ~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_         105 IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             CCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            8 899999999999753          1  23456799999763

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1.8e-15  Score=137.06  Aligned_cols=91  Identities=18%  Similarity=0.281  Sum_probs=75.7

Q ss_pred             CeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc--------------ceeeeecc-CCC
Q 005736          294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--------------ELTRRTDA-RPG  358 (680)
Q Consensus       294 ~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~--------------~~~~~T~v-~~t  358 (680)
                      .|.|.|+|++|+||+++|..|.+                      ||||++.+.              .++++|++ +++
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~----------------------DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t   74 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYS----------------------DPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS   74 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCS----------------------CCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHH
T ss_pred             CCEEEEEEEEeECCCCcCCCCCC----------------------CcCEEEEEecCcccccccccCCCceeeeccCCcCC
Confidence            38999999999999999876653                      999999983              22457887 688


Q ss_pred             CCCccceeEEEEEec----CCCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          359 SDPRWDSMFNMVLHE----ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       359 ~nP~Wne~f~~~v~~----~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      .||.|||+|.|.+-.    ....|.|+|||+|.. .+|++||++.|+|.++..
T Consensus        75 ~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~-~~~~~lG~~~i~L~~l~~  126 (142)
T d1rh8a_          75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRF-SSNDFLGEVLIDLSSTSH  126 (142)
T ss_dssp             HSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSS-SCEEEEEEEEEETTSCGG
T ss_pred             CCceeEEEEEEeeecccccCCCEEEEEEEEecCC-CCCeeeEEEEEEhHHcCC
Confidence            999999999997432    245799999999986 589999999999999853

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=3.9e-14  Score=126.14  Aligned_cols=91  Identities=22%  Similarity=0.351  Sum_probs=73.0

Q ss_pred             eEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-C-CCCCCccceeE
Q 005736          295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-R-PGSDPRWDSMF  367 (680)
Q Consensus       295 G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~-~t~nP~Wne~f  367 (680)
                      ..|+|+|++|++|+..+....+                    .+||||++++.     .+.++|++ + ++.||.|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~--------------------~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f   63 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNS--------------------IVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF   63 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-------------------------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCC--------------------CcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEE
Confidence            5799999999999865432211                    14999999983     46778886 4 56899999999


Q ss_pred             EEEEecC-CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          368 NMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       368 ~~~v~~~-~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      .|.+... ...|.|+|||+|.. ++|++||++.++|..+.
T Consensus        64 ~f~~~~~~~~~L~~~V~D~d~~-~~d~~iG~~~i~l~~l~  102 (131)
T d1qasa2          64 EFEVTVPDLALVRFMVEDYDSS-SKNDFIGQSTIPWNSLK  102 (131)
T ss_dssp             EEEESCGGGCEEEEEEEECCTT-TCCEEEEEEEEEGGGBC
T ss_pred             EEEEEcchhceEEEEEEEecCC-CCCcEEEEEEEEEeccC
Confidence            9988765 46799999999986 58999999999999985

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.3e-14  Score=125.15  Aligned_cols=97  Identities=11%  Similarity=0.147  Sum_probs=79.3

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEE---cceeeeecc-CCCCCCccc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL---EELTRRTDA-RPGSDPRWD  364 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~---~~~~~~T~v-~~t~nP~Wn  364 (680)
                      .+.+..+.|.|+|++|+||+.++..+..                     +||||++.+   +.+.++|++ +++.||.||
T Consensus        16 ~Y~~~~~~L~V~V~~a~~L~~~d~~~~~---------------------~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wn   74 (138)
T d1ugka_          16 EYNFERKAFVVNIKEARGLPAMDEQSMT---------------------SDPYIKMTILPEKKHKVKTRVLRKTLDPAFD   74 (138)
T ss_dssp             EEEGGGTEEEEEEEEEESCCCCBTTTTB---------------------CEEEEEEEEETTTCSEEECCCCSSCSSCEEE
T ss_pred             EEeCCCCEEEEEEEEecCCCCCCCCCCc---------------------cceEEEEEEcCCCCEeEeCeeEeCCCCCcee
Confidence            3334458999999999999998765532                     399999999   456788998 799999999


Q ss_pred             eeEEEE-EecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          365 SMFNMV-LHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       365 e~f~~~-v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      |+|.|. +...   ...|+|+|||.|.. .+|++||++.|+|+++..
T Consensus        75 e~f~f~~~~~~~l~~~~L~~~V~d~d~~-~~~~~iG~~~i~L~~~~~  120 (138)
T d1ugka_          75 ETFTFYGIPYTQIQELALHFTILSFDRF-SRDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             EEEEEECCCSTTGGGCEEEEEEEEECSS-CCCCCCEEEEEECTTCCC
T ss_pred             eEEEEeeeCHHHcccceEEEEEEECCCC-CCCcEEEEEEEEcccccC
Confidence            999996 3322   34799999999986 589999999999999853

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=4.5e-14  Score=126.77  Aligned_cols=94  Identities=16%  Similarity=0.314  Sum_probs=78.0

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~  362 (680)
                      .+.+..|.|.|+|++|+||+..+..+.                      +||||++.+.     ...++|++ +++.||.
T Consensus         9 ~Y~~~~~~L~V~v~~a~nL~~~~~~~~----------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~   66 (137)
T d2cm5a1           9 MYSTQQGGLIVGIIRCVHLAAMDANGY----------------------SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE   66 (137)
T ss_dssp             EEETTTTEEEEEEEEEESCCCCSTTSC----------------------CCEEEEEEEETC---CCEEECCCCCSCSSCE
T ss_pred             EEECCCCEEEEEEEEEECCCCCCCCCC----------------------cCeEEEEEEEcCCccceeecCEeEcCCCCCc
Confidence            334456999999999999998876554                      3999999983     34578888 7899999


Q ss_pred             cceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccc
Q 005736          363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV  405 (680)
Q Consensus       363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l  405 (680)
                      |||+|.|.+...   ...|.+.|||+|.. .++++||++.+++..+
T Consensus        67 wne~f~f~v~~~~l~~~~l~v~v~~~~~~-~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          67 FNEEFFYDIKHSDLAKKSLDISVWDYDIG-KSNDYIGGCQLGISAK  111 (137)
T ss_dssp             EEEEEEEECCGGGGGGCEEEEEEEECCSS-SCCEEEEEEEEETTCC
T ss_pred             cceEEEEEeEHHHccccEEEEEeeeCCCC-CCCCEEEEEEeCcccc
Confidence            999999998753   34799999999876 6899999999999765

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=8.4e-14  Score=122.18  Aligned_cols=107  Identities=8%  Similarity=0.197  Sum_probs=85.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEEeeCCceEEEEEEEEecCCCCc
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDE  562 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~d~  562 (680)
                      .++|.+....--+.+..++.+||||+|++++     ...+|+++ +|+||.|||+|+|.+.+ ...|.|.|||++   ++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d---d~   79 (123)
T d1bdya_           4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA---ED   79 (123)
T ss_dssp             EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET---TE
T ss_pred             eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc---cc
Confidence            3555554442223345578999999999943     34678888 99999999999999975 467999999986   78


Q ss_pred             eeEEEEEEccccc-----CCCeeeEEEeCCCCCCeEEEEEEEEE
Q 005736          563 NMGSARVNLEGLV-----EGSVRDIWVPLEKVNTGELRLQIEAT  601 (680)
Q Consensus       563 ~iG~~~i~L~~l~-----~~~~~~~w~~L~~~~~G~i~l~l~~~  601 (680)
                      ++|.+.+++.++.     .+...+.|++|+.  +|+|+++++|.
T Consensus        80 ~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~--~Gkl~l~v~~f  121 (123)
T d1bdya_          80 PMSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMCVQYF  121 (123)
T ss_dssp             EEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--SCEEEEEEEEE
T ss_pred             ccCccEEehhheeeccccCCCcccEEEeCCC--CEEEEEEEEEe
Confidence            9999999999875     3567889999985  79999999987

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.8e-14  Score=124.49  Aligned_cols=97  Identities=16%  Similarity=0.294  Sum_probs=74.5

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~  362 (680)
                      .+.+..+.|.|+|++|+||++.+..+.                      +||||++.+.     ...++|++ +++.||.
T Consensus         8 ~y~~~~~~L~V~V~~a~~L~~~~~~~~----------------------~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~   65 (125)
T d2bwqa1           8 WFDKVGHQLIVTILGAKDLPSREDGRP----------------------RNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK   65 (125)
T ss_dssp             EEETTTTEEEEEEEEEESCCCCTTSCC----------------------BCEEEEEEEESSCSGGGEEECCCCSSBSSCE
T ss_pred             EEECCCCEEEEEEEEeECCCCcCCCCC----------------------CCEEEEEEEeCCCCCccccccCEEcCCCCCE
Confidence            444556999999999999998876554                      3999999982     45678888 7899999


Q ss_pred             cceeEEEE-EecC---CCeEEEEEEEeCCCC-CCCceeEEEEEecccccC
Q 005736          363 WDSMFNMV-LHEE---TGTVRFNLYECIPGH-VKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       363 Wne~f~~~-v~~~---~~~l~l~v~d~d~~~-~~d~~lG~~~i~l~~l~~  407 (680)
                      |||+|.|. +...   ...|.|.|||+|... .++++||++.++|+++..
T Consensus        66 wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~  115 (125)
T d2bwqa1          66 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL  115 (125)
T ss_dssp             EEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCC
T ss_pred             EccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCC
Confidence            99999996 4432   347999999998742 256799999999999864

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=5.9e-14  Score=126.16  Aligned_cols=117  Identities=14%  Similarity=0.172  Sum_probs=83.4

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc-----ceeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-----ELTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~-----~~~~~T~v-~~t~nP~  362 (680)
                      .+.+..|.|.|+|++|++|++++..+.                      +||||++.+.     ...++|++ +++.||.
T Consensus         9 ~Y~~~~~~L~V~v~~a~~L~~~~~~~~----------------------~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~   66 (138)
T d1w15a_           9 CYQSTTNTLTVVVLKARHLPKSDVSGL----------------------SDPYVKVNLYHAKKRISKKKTHVKKCTPNAV   66 (138)
T ss_dssp             EEETTTTEEEEEEEEEESCC------C----------------------CCEEEEEEEEETTEEEEEEECCCCCSCSSEE
T ss_pred             EEcCCCCEEEEEEEEeECCCCCCCCCC----------------------cCEEEEEEEeCCcccCccccceeECCCCCCe
Confidence            333445899999999999999886554                      3999999983     23567887 7899999


Q ss_pred             cceeEEEEEecC--C-CeEEEEEEEeCCCCCCCceeEEEEEecccccCCCceeeeeCCCcchhhhhhh---ccCceeeee
Q 005736          363 WDSMFNMVLHEE--T-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAE---FCGDEVEMT  436 (680)
Q Consensus       363 Wne~f~~~v~~~--~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~  436 (680)
                      |||+|.|.+...  . ..|.|.|||+|.. .++++||++.|++......             ...|++   ..++...+|
T Consensus        67 wne~f~F~v~~~~~~~~~l~i~v~d~~~~-~~~~~iG~~~i~l~~~~~~-------------~~hW~~ll~~~~k~i~~W  132 (138)
T d1w15a_          67 FNELFVFDIPCESLEEISVEFLVLDSERG-SRNEVIGRLVLGATAEGSG-------------GGHWKEICDFPRRQIAKW  132 (138)
T ss_dssp             EEEEEEEECCSSSSTTEEEEEEEEECCTT-SCCEEEEEEEESTTCCSHH-------------HHHHHHHHHSTTCCEEEE
T ss_pred             ECcEEEEEecHHHhCccEEEEEEEeCCCC-CCCCEEEEEEEcchhCCch-------------HHHHHHHHhCCCCeeeEC
Confidence            999999998653  2 3599999999986 5899999999998764211             122332   235667788


Q ss_pred             eccCC
Q 005736          437 VPFEG  441 (680)
Q Consensus       437 ~~l~~  441 (680)
                      ++|.+
T Consensus       133 h~L~~  137 (138)
T d1w15a_         133 HMLCD  137 (138)
T ss_dssp             EECBC
T ss_pred             eEccc
Confidence            88754

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.5e-14  Score=131.28  Aligned_cols=89  Identities=22%  Similarity=0.311  Sum_probs=77.6

Q ss_pred             CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEeeecc-CCCCCeeeeEEEEEeeC---CceEEEEEEEEec
Q 005736          487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEE  557 (680)
Q Consensus       487 ~~~L~V~I~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~-~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~  557 (680)
                      .+.|.|+|++|+||+..+..+.+||||++++..     ...+|+++ ++.||.|||+|.|.+..   ....|.|.|||++
T Consensus        19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~   98 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD   98 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred             CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecC
Confidence            358999999999999888889999999999932     35789999 99999999999998764   2567999999999


Q ss_pred             CC-CCceeEEEEEEccccc
Q 005736          558 IF-GDENMGSARVNLEGLV  575 (680)
Q Consensus       558 ~~-~d~~iG~~~i~L~~l~  575 (680)
                      .. ++++||++.|+|+.+.
T Consensus        99 ~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          99 CIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             SSSCCEEEEECCCSSCTTC
T ss_pred             CCCCCcEEEEEEECchHcC
Confidence            88 8899999999998753

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1.6e-13  Score=126.13  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=77.8

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~  362 (680)
                      .+.+..|.|.|+|++|+||+..+..+.                      +||||++.+..     ..++|++ +++.||+
T Consensus        19 ~Y~~~~~~L~V~V~~a~~L~~~~~~~~----------------------~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~   76 (157)
T d1uowa_          19 RYVPTAGKLTVVILEAKNLKKMDVGGL----------------------SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY   76 (157)
T ss_dssp             EEETTTTEEEEEEEEEESCCCCSTTSC----------------------CCEEEEEEEEETTEEEEEEECCCCCSCSSCE
T ss_pred             EEcCCCCEEEEEEEEEEEcccccCCCC----------------------CCeeEEEEEecCCccccceecccccCCCCcc
Confidence            344456999999999999998876554                      39999999852     3457888 7899999


Q ss_pred             cceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccc
Q 005736          363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV  405 (680)
Q Consensus       363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l  405 (680)
                      |||+|.|.+...   ...|.|.|||+|.. .++++||++.|++...
T Consensus        77 wne~f~F~v~~~~l~~~~l~i~v~d~~~~-~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_          77 YNESFSFEVPFEQIQKVQVVVTVLDYDKI-GKNDAIGKVFVGYNST  121 (157)
T ss_dssp             EEEEEEEECCGGGGGGCEEEEEEEECCSS-SCCCEEEEEEEETTCC
T ss_pred             cCCeEEEEecHHHcCccEEEEEEcccCCC-CCCceeEEEEEecccC
Confidence            999999998764   34799999999986 6899999999998764

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.4e-13  Score=122.07  Aligned_cols=92  Identities=14%  Similarity=0.195  Sum_probs=75.3

Q ss_pred             ccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc----ceeeeecc-CCCCCCccc
Q 005736          290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDA-RPGSDPRWD  364 (680)
Q Consensus       290 ~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~----~~~~~T~v-~~t~nP~Wn  364 (680)
                      +....+.|.|+|++|++|..   .|.                      +||||++.+.    ...++|++ +++.||+||
T Consensus        21 y~~~~~~L~V~v~~a~~L~~---~g~----------------------~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wn   75 (138)
T d1wfma_          21 YDCQKAELFVTRLEAVTSNH---DGG----------------------CDCYVQGSVANRTGSVEAQTALKKRQLHTTWE   75 (138)
T ss_dssp             EETTTTEEEEEEEEEECCCC---SSC----------------------CCEEEEEEEEETTEEEEEECCCCCCCSSEECS
T ss_pred             ECCCCCEEEEEEEEcCCCCC---CCC----------------------cCcEEEEEECCCCCccceeeeEECCCCCceEe
Confidence            33445899999999999953   232                      3999999994    34578888 789999999


Q ss_pred             eeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          365 SMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       365 e~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                      |+|.|.+...   ...|.|+|||+|.. .++++||++.|+|.++..
T Consensus        76 e~f~f~v~~~~l~~~~L~~~V~d~~~~-~~~~~iG~~~i~L~~l~~  120 (138)
T d1wfma_          76 EGLVLPLAEEELPTATLTLTLRTCDRF-SRHSVAGELRLGLDGTSV  120 (138)
T ss_dssp             SCEEEECCTTSSTTCEEEEEEEECCSS-CTTSCSEEEEEESSSSSS
T ss_pred             eeEEEEeeehhccceEEEEEEeeeccc-ccceeeeEEEEEhHHccC
Confidence            9999998653   45799999999986 589999999999999853

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=6.5e-13  Score=116.39  Aligned_cols=91  Identities=14%  Similarity=0.281  Sum_probs=71.9

Q ss_pred             CCeEEEEEEcce-----eeeecc-CCCCCCccceeEEEEEecCCCeEEEEEEEeCCCCCCCceeEEEEEecccccCCCce
Q 005736          338 LTTFVEIELEEL-----TRRTDA-RPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTT  411 (680)
Q Consensus       338 ~dpyv~v~~~~~-----~~~T~v-~~t~nP~Wne~f~~~v~~~~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~  411 (680)
                      +||||+|.+++.     .++|++ ++|+||+|||+|+|.+.+ .+.|.|.|||+|     |+++|.+.+++.++....  
T Consensus        24 ~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d-----d~~~g~~~i~l~~l~~~~--   95 (123)
T d1bdya_          24 SQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA-----EDPMSEVTVGVSVLAERC--   95 (123)
T ss_dssp             CCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET-----TEEEEEEEEEHHHHHHHH--
T ss_pred             CCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc-----ccccCccEEehhheeecc--
Confidence            499999999642     356776 799999999999999976 467999999965     689999999999885321  


Q ss_pred             eeeeCCCcchhhhhhhccCceeeeeeccCCCceeeEEEEEEE
Q 005736          412 FWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVL  453 (680)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~G~l~~~l~l  453 (680)
                                     ...+...+.|++++  +.|+|++++.+
T Consensus        96 ---------------~~~~~~~~~W~~L~--~~Gkl~l~v~~  120 (123)
T d1bdya_          96 ---------------KKNNGKAEFWLDLQ--PQAKVLMCVQY  120 (123)
T ss_dssp             ---------------HTTTTEEEEEEECB--SSCEEEEEEEE
T ss_pred             ---------------ccCCCcccEEEeCC--CCEEEEEEEEE
Confidence                           11245788999996  47999988754

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=5.2e-14  Score=127.69  Aligned_cols=95  Identities=17%  Similarity=0.225  Sum_probs=77.9

Q ss_pred             cccCcCeEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEcc-----eeeeecc-CCCCCCc
Q 005736          289 RKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-----LTRRTDA-RPGSDPR  362 (680)
Q Consensus       289 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~~-----~~~~T~v-~~t~nP~  362 (680)
                      .+.+..|.|.|+|++|+||+..+..+.+                      ||||++.+..     ..++|++ +++.||.
T Consensus        14 ~Y~~~~~~L~V~V~~a~nL~~~~~~~~~----------------------dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~   71 (145)
T d1dqva2          14 CYLPTAGLLTVTIIKASNLKAMDLTGFS----------------------DPYVKASLISEGRRLKKRKTSIKKNTLNPT   71 (145)
T ss_dssp             EEETTTTEEEEEEEEEESCCCCSSSSCC----------------------CEEEEECCCTTCCTTSCEECCCCCSCSSCE
T ss_pred             EEcCCCCEEEEEEEEEeCCCCcCCCCCc----------------------CceEEEEEccCCccceeecCEEEeCCCCce
Confidence            4445569999999999999988866543                      9999999863     2467887 7899999


Q ss_pred             cceeEEEEEecC---CCeEEEEEEEeCCCCCCCceeEEEEEeccccc
Q 005736          363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  406 (680)
Q Consensus       363 Wne~f~~~v~~~---~~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~  406 (680)
                      |||+|.|.+...   ...|.|.|||++.. .+|++||++.|++..+.
T Consensus        72 wne~f~F~v~~~~~~~~~l~v~v~d~~~~-~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          72 YNEALVFDVAPESVENVGLSIAVVDYDCI-GHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             EEECCCCCCCSGGGGSCCCCCEEEECCSS-SCCEEEEECCCSSCTTC
T ss_pred             ecceEEEEEehhhcCCCEEEEEEEecCCC-CCCcEEEEEEECchHcC
Confidence            999999987642   34699999999886 68999999999998764

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.4e-10  Score=101.06  Aligned_cols=100  Identities=23%  Similarity=0.361  Sum_probs=74.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE-C-----CEEEeeec--c-CCCCCeeeeE-EEEE-eeCC-ceEEEEEEEEe
Q 005736          489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-G-----KIVQRTRT--A-HSPNHVWNQK-FELD-EIGG-GECLMVKCYNE  556 (680)
Q Consensus       489 ~L~V~I~~a~~L~~~~~~~~~dpyv~v~l-~-----~~~~~T~~--~-~t~nP~wne~-f~f~-v~~~-~~~L~i~V~d~  556 (680)
                      .|.|+|++|++|+..    ..||||+|++ |     ....+|++  . ++.||.|||. |.|. +..+ ...|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999754    4899999999 2     23344443  4 7899999976 4443 3433 45899999998


Q ss_pred             cCCCCceeEEEEEEcccccCCCeeeEEEeCCCCCCeEEEEEE
Q 005736          557 EIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQI  598 (680)
Q Consensus       557 ~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~l  598 (680)
                      +   |++||++.+||+.+..+   -++++|.+.....+..+.
T Consensus        78 d---~~~lG~~~ipl~~l~~G---yR~vpL~~~~g~~l~~~~  113 (122)
T d2zkmx2          78 G---NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPA  113 (122)
T ss_dssp             T---TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEE
T ss_pred             C---CCEEEEEEEEcccCcCC---ceEEEccCCCcCCCCCce
Confidence            5   79999999999998654   477888876544455443

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=6e-10  Score=96.87  Aligned_cols=81  Identities=23%  Similarity=0.332  Sum_probs=60.6

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCCCeEEEEEEc------ceeeeec--c-CCCCCCcccee
Q 005736          296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTD--A-RPGSDPRWDSM  366 (680)
Q Consensus       296 ~L~V~v~~a~~L~~~d~~g~~~~~~~~~~s~~~~~~~~~d~~~dpyv~v~~~------~~~~~T~--v-~~t~nP~Wne~  366 (680)
                      .|.|+|++|++|++.+                          .||||++++-      ....+|+  + .++.||.|||.
T Consensus         2 tl~V~Visaq~L~~~~--------------------------~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~   55 (122)
T d2zkmx2           2 TLSITVISGQFLSERS--------------------------VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEE   55 (122)
T ss_dssp             EEEEEEEEEESCCSSC--------------------------CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCC
T ss_pred             EEEEEEEEeeCCCCCC--------------------------CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEccc
Confidence            5899999999997643                          3999999982      2233343  3 47899999976


Q ss_pred             -EEEE-EecCC-CeEEEEEEEeCCCCCCCceeEEEEEecccccC
Q 005736          367 -FNMV-LHEET-GTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  407 (680)
Q Consensus       367 -f~~~-v~~~~-~~l~l~v~d~d~~~~~d~~lG~~~i~l~~l~~  407 (680)
                       |.+. +...+ ..|+|.|||+|     |++||++.+||+.+..
T Consensus        56 ~~~~~~~~~~~l~~L~f~V~D~d-----~~~lG~~~ipl~~l~~   94 (122)
T d2zkmx2          56 PFVFEKILMPELASLRVAVMEEG-----NKFLGHRIIPINALNS   94 (122)
T ss_dssp             CEEEEEESSGGGCEEEEEEEETT-----TEEEEEEEEEGGGBCC
T ss_pred             EeEEEecCCCcccEEEEEEECCC-----CCEEEEEEEEcccCcC
Confidence             4443 34333 47999999954     7999999999999853