Citrus Sinensis ID: 005758

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68

MDRSRSKRNYYYDHQDYDGDTMGRTKPRYNHYYQPNNNYRHRGNNNNNTNNIMNNNTSINNSNNRANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGSLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSSTGPTGSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIPATSQPSKEAAGSVSETVKQNESERREDVPTVINRVPLPLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILSTQDAD

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccEEEEEcccccHHHHHHHHHHccEEEEcccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccHHHHHHHHHccccEEEEEcccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEccccHHHHHHHHHcccEEcccccccccccEEEEEccccccccccHHHHHHHHHHHHHccccccccccEEEEEEEccccccccccccccHHHHHHHHccEEEEEcccccccccccccEEEEEEccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEcccccHHHHHHHHHccEEEEEccccccccEEEEEEccHHHHHHHHHHHHHHHHcccccc

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccEEEEEccccHHHHHHHHHcccEEEEcccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEEcccEEEEEcccccEHHHHHHHcccEEEEEcccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccHcccEEEcccccHHHHHHHHcccEEEEcccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccEEEEEcccccHHHHHHHcccEEEEEcccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccHHccHEEcccccHHHHHHHHcccEEEEcccccccccEEEEEEccHHHHHHHHHHHHHHHHHccccc

mdrsrskrnyyydhqdydgdtmgrtkprynhyyqpnnnyrhrgnnnnntnnimnnntsinnsnnransnpkdpslmvTTTYRILCHdmkaggvigksGSIIKSIRQHTGawinvhelipgdeeriieisdtrrrdpegrmpsfspaQEALFLIHDRilesdggggfygeeeeeygggggvggggfrgggnrVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTqirilprdhslprcvsMSEEIVQVVGDINNVKNAVAIISSRLResqhrdrshfhgrlhspdrffpdddyvphmnntarrpsmdgarfsgsnyrsnnygprpsgysieagaapmsdsvqpfygedlVFRMLcpidkvgrvigESEGIVELLQNEIgvdlkvadpvdgsdeqiitisseegpddelfpAQEALLHIQTRIVDlgadkdniittrllvpsseigclegrdgslsemrrstganiqilsreevpacvsgTDELVQIVGEIQAARDALVEVTTRLRSYLYRdffqketppsstgptgsalvveaaspiditparevqtvtdppaathqsvqipatsqpskeaagsvsetvkqneserredvptvinrvplplvtrstlevvlpdyavpklitKSKTLLTRFsemsgasvslvegqpegtqKIIQISGTPEQVERAQSVLQGFILSTQDAD

mdrsrskrnyyydhqdydgdtmgrtKPRYNHYYQPNNNYRHRGNNNNNTNNIMNNNTSINNSnnransnpkdpSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAwinvhelipgdeeriieisdtrrrdpegrmpsFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLlgkggkiieQMRMETKtqirilprdhslprCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQHrdrshfhgrlhspdrffpddDYVPHMNntarrpsmdgarfSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIsseegpddELFPAQEALLHIQTRIVDLGADKDNIITtrllvpsseigclegrdgslsemRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFfqketppsstgptgsALVVEAASPIDITPAREVQTVTDPPAATHqsvqipatsqpskeaagsvsetvkqneserredvptvinrvplplvtrstlevvlpdyavpkliTKSKTLLTRFSEMSGAsvslvegqpegTQKIIQISGTPEQVERAQSVLQGFILSTQDAD

MDRSRSKRNYYYDHQDYDGDTMGRTKPRYNHYYQPnnnyrhrgnnnnntnnimnnntsinnsnnransnPKDPSLMVTTTYRILCHDMkaggvigksgsiiksiRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILESDggggfygeeeeeygggggvggggfrgggNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGSLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSSTGPTGSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIPATSQPSKEAAGSVSETVKQNESERREDVPTVINRVPLPLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILSTQDAD

**************************************************************************LMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERII**********************ALFLIHDRILE********************************VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIIS*****************************************************************************VQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVD*****II***********LFPAQEALLHIQTRIVDLGADKDNIITTRLLVPSSEIGCLE***************NIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQ*****************************************************************************TVINRVPLPLVTRSTLEVVLPDYAVPKLITKSKTLLTRF*************************************************

*******************************************************************************TYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRI*********************************RVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQH***************FFPDDDYVPHMNNTARRPSMDGARFSGSN************YSIEAGAAPMSDSV*PFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDL*V***************SEEGPDDELFPAQEALLHI***************TTRLLVPSSEIGCLEGRDGSLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYR*************************************VTDPPAATHQSVQIPATSQPSKEAAGSVSETVKQNESERREDVPTVINRVPLPLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSL******GTQKIIQISGTPEQVERAQSVLQG**LS*****

********NYYYDHQDYDGDTMGRTKPRYNHYYQPNNNYRHRGNNNNNTNNIMNNNTSINNSNNRANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSR***********FHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGSLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQK***********SALVVEAASPIDITPAREVQTVT***************************************DVPTVINRVPLPLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILSTQDAD

***************DYDGDTMGRTKPRYN*******************************************SLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILESDGGG*************************NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQHRD*SH******SPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSN**************************GEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGSLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDF*******SSTGPTGSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIPATSQPSK*****************************LPLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILST****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		678	2.2.26 [Sep-21-2011]
P58223		606	KH domain-containing prot	no	no	0.815	0.912	0.265	1e-39
O42254		576	Insulin-like growth facto	yes	no	0.523	0.616	0.241	2e-09
P57722		371	Poly(rC)-binding protein	yes	no	0.455	0.832	0.223	4e-09
P57721		371	Poly(rC)-binding protein	yes	no	0.455	0.832	0.223	5e-09
Q15366		365	Poly(rC)-binding protein	no	no	0.421	0.783	0.231	2e-07
O19048		356	Poly(rC)-binding protein	no	no	0.423	0.806	0.237	1e-06
P60335		356	Poly(rC)-binding protein	no	no	0.423	0.806	0.237	1e-06
Q15365		356	Poly(rC)-binding protein	no	no	0.423	0.806	0.237	1e-06
Q5E9A3		356	Poly(rC)-binding protein	no	no	0.423	0.806	0.237	1e-06
Q61990		362	Poly(rC)-binding protein	no	no	0.426	0.798	0.227	2e-06

>sp\|P58223\|Y4837_ARATH KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1	Back alignment and function desciption

 Score =  165 bits (418), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 176/662 (26%), Positives = 298/662 (45%), Gaps = 109/662 (16%)

Query: 54  NNNTSINNSNNRANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWIN 113
           NN+ S  N   R + +  +   +V   YRILC     GGVIGKSG +I +IR +T A I 
Sbjct: 13  NNSESNRNQKRRISHDKINRDELVV--YRILCPIDVVGGVIGKSGKVINAIRHNTKAKIK 70

Query: 114 VHELIPGDEERIIEI--SDTRRRDPEGRMPS----FSPAQEALFLIHDRILESDGGGGFY 167
           V + + G  +R+I I  S   +++  G   S       AQ+AL  ++D I+ SD      
Sbjct: 71  VFDQLHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASD------ 124

Query: 168 GEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI 227
               EE      V     +        R++V       L+GK G+ I+++R  T+  +++
Sbjct: 125 ----EENNTKTNVDRDDNK------ECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKV 174

Query: 228 LPRDHSLPR--CVSMSEEIVQVVGDINNVKNAVAIISSRLRESQHRDR------------ 273
           + +D S P   C    + +V + G+  +VK A+  +S+ + +   R+             
Sbjct: 175 VSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKINPRENIPLDSTSQDVPA 234

Query: 274 ------SHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGAR----FSGSNYRSNNYGPR 323
                 S     ++    F+ + D++  +   A  PS   A     F G  Y      P 
Sbjct: 235 ASVIVPSDLSNSVYPQTGFYSNQDHI--LQQGAGVPSYFNALSVSDFQG--YAETAANPV 290

Query: 324 PSGYSIEAGAAPMSDSVQPFYG----EDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGV 379
           P    + A + P++     F G    E+LVF++LCP+  + RVIG+    ++ ++   G 
Sbjct: 291 P----VFASSLPVT---HGFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGS 343

Query: 380 DLKVADPVD--GSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLL 437
            ++V D     G DE +I +++ E PDD    A EA+L +Q  I D  A+    +  +LL
Sbjct: 344 CIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQEYINDEDAEN---VKMQLL 400

Query: 438 VPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSG--TDELVQIVGEIQAARD 494
           V S  IGC+ G+ GS ++E+R+ T ANI          C+S    D+LV++ GE+ + RD
Sbjct: 401 VSSKVIGCVIGKSGSVINEIRKRTNANI----------CISKGKKDDLVEVSGEVSSVRD 450

Query: 495 ALVEVTTRLRSYLY--RDFFQKETPPSSTGPTGSALVVEAASPIDITPAREVQTVTDPPA 552
           AL+++  RLR  +   +D      PP+    T +   +  +S    T    + ++    +
Sbjct: 451 ALIQIVLRLREDVLGDKDSVATRKPPAR---TDNCSFLSGSSNAGYTLPSFMSSMAS-TS 506

Query: 553 ATHQSVQIPATSQPSKEAAGSVSETVKQNESERREDVPTVINRVPLPLVTRSTLEVVLPD 612
             H     PA         GS                P    R+P    + S LE+++P 
Sbjct: 507 GFHGYGSFPA----GDNVLGSTG--------------PYSYGRLP----SSSALEILIPA 544

Query: 613 YAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFIL 672
           +A+ K++ K    L     +SGA + +   +      I  +SGT EQ+  A++++Q F++
Sbjct: 545 HAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMRCAENLVQAFVM 604

Query: 673 ST 674
           ST
Sbjct: 605 ST 606

Arabidopsis thaliana (taxid: 3702)

>sp\|O42254\|IF2B1_CHICK Insulin-like growth factor 2 mRNA-binding protein 1 OS=Gallus gallus GN=IGF2BP1 PE=1 SV=1	Back alignment and function description

>sp\|P57722\|PCBP3_MOUSE Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=2 SV=3	Back alignment and function description

>sp\|P57721\|PCBP3_HUMAN Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=2 SV=2	Back alignment and function description

>sp\|Q15366\|PCBP2_HUMAN Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1	Back alignment and function description

>sp\|O19048\|PCBP1_RABIT Poly(rC)-binding protein 1 OS=Oryctolagus cuniculus GN=PCBP1 PE=2 SV=1	Back alignment and function description

>sp\|P60335\|PCBP1_MOUSE Poly(rC)-binding protein 1 OS=Mus musculus GN=Pcbp1 PE=1 SV=1	Back alignment and function description

>sp\|Q15365\|PCBP1_HUMAN Poly(rC)-binding protein 1 OS=Homo sapiens GN=PCBP1 PE=1 SV=2	Back alignment and function description

>sp\|Q5E9A3\|PCBP1_BOVIN Poly(rC)-binding protein 1 OS=Bos taurus GN=PCBP1 PE=2 SV=1	Back alignment and function description

>sp\|Q61990\|PCBP2_MOUSE Poly(rC)-binding protein 2 OS=Mus musculus GN=Pcbp2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		678
224135123		685	predicted protein [Populus trichocarpa]	0.967	0.957	0.719	0.0
356516077		647	PREDICTED: KH domain-containing protein	0.941	0.986	0.683	0.0
356509231		644	PREDICTED: KH domain-containing protein	0.936	0.986	0.675	0.0
224118310		655	predicted protein [Populus trichocarpa]	0.936	0.969	0.701	0.0
449456987		666	PREDICTED: KH domain-containing protein	0.963	0.980	0.686	0.0
225455340		661	PREDICTED: KH domain-containing protein	0.960	0.984	0.679	0.0
255561850		704	nucleic acid binding protein, putative [	0.923	0.889	0.664	0.0
302143921		575	unnamed protein product [Vitis vinifera]	0.833	0.982	0.699	0.0
30696273		652	RNA-binding KH domain-containing protein	0.942	0.980	0.612	0.0
8809595		660	RNA-binding protein-like [Arabidopsis th	0.941	0.966	0.611	0.0

>gi\|224135123\|ref\|XP_002321989.1\| predicted protein [Populus trichocarpa] gi\|222868985\|gb\|EEF06116.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/702 (71%), Positives = 566/702 (80%), Gaps = 46/702 (6%)

Query: 1   MDRSRSKRNYYYDHQDYDGDT--------MGRTKPRYNHYYQPNNNYRHRGNNNNNTNNI 52
           M+RSRSKRNYYYDHQDYD D         M RTKPRYN+    NN YR RG   NN  N 
Sbjct: 1   MERSRSKRNYYYDHQDYDNDNLNNNNNNNMVRTKPRYNNN---NNYYRQRGQGGNNMFNN 57

Query: 53  MNNNTSINNSNNRANSNPKDPS--LMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGA 110
            NN  S      +     +DPS  LMVTT+YRILCHDMKAGGVIGKSGSIIKSIRQHTGA
Sbjct: 58  NNNRFSRTQQQQQPPQQQQDPSSTLMVTTSYRILCHDMKAGGVIGKSGSIIKSIRQHTGA 117

Query: 111 WINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILESD--------G 162
           WINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILE+D        G
Sbjct: 118 WINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILENDLQYGVVSSG 177

Query: 163 GGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETK 222
            GGF   EE+EY G GG          NRVATR+VVSRMHVGCLLGKGGKIIEQMRMETK
Sbjct: 178 AGGF---EEDEYVGRGG----------NRVATRLVVSRMHVGCLLGKGGKIIEQMRMETK 224

Query: 223 TQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQHRDRSHFHGRLHS 282
           TQIRILPRDH+LPRCVS+SEEIVQV+GD+N VKNAVAIISSRLRESQHRDRSHFHGR+ S
Sbjct: 225 TQIRILPRDHTLPRCVSVSEEIVQVIGDVNAVKNAVAIISSRLRESQHRDRSHFHGRVQS 284

Query: 283 PDRFFPDDDYVPHMNNTARRPSMDG-----ARFSGSNYRSNNYGPRPSGYSIEAGAAPMS 337
           P+RF  DDDYVPHMN   RR SMDG     +R SG NYR+NNY  R  G+ ++AGA P +
Sbjct: 285 PERFL-DDDYVPHMNT--RRSSMDGPPSFGSRLSGPNYRNNNYSSRAPGFPVDAGADPNA 341

Query: 338 DSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITI 397
           DS QPFY EDLVFR+LCPIDKV RV+GES+G+V+LLQNEIGVD+KVADPV GSDEQIITI
Sbjct: 342 DSAQPFYVEDLVFRILCPIDKVNRVVGESDGLVDLLQNEIGVDVKVADPVSGSDEQIITI 401

Query: 398 SSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGSLSEMR 457
            SEEGPDDELFPAQEALLHIQTRIVDL ADKDNIITTRLLVPSSEIGCLEGRDGSLSEM 
Sbjct: 402 CSEEGPDDELFPAQEALLHIQTRIVDLVADKDNIITTRLLVPSSEIGCLEGRDGSLSEME 461

Query: 458 RSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETP 517
             TGA I+IL +E +P  +SGTDELVQI GE++AARDALVEVT+RLRSYLY+D FQK+ P
Sbjct: 462 SLTGATIEILPKEMLPTYLSGTDELVQIQGEVKAARDALVEVTSRLRSYLYKDVFQKDLP 521

Query: 518 P--SSTGPTGSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIPATSQPSKEAAGSVS 575
           P  S+ GP G+A  ++AAS  + TPARE  +  DPP AT+Q+VQ  +T QPSK+A GS +
Sbjct: 522 PTVSAPGPAGTAGGLQAASSNNPTPAREGHSGGDPP-ATYQNVQSASTPQPSKDARGSSA 580

Query: 576 ETVKQNESERREDV-PTVINRVPLPLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSG 634
           ETVKQNESE RED+ P  +NR+P+ LVTRS LEVV+P+ AVPKLITKSK  L + SE+SG
Sbjct: 581 ETVKQNESEHREDLPPPTMNRIPVTLVTRSILEVVIPEPAVPKLITKSKNKLAQISELSG 640

Query: 635 ASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILSTQD 676
           A+V+LVE +P+ T+KIIQISGTPEQ ERAQS+LQGFILS Q+
Sbjct: 641 ANVTLVEDRPDVTEKIIQISGTPEQAERAQSLLQGFILSIQE 682

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356516077\|ref\|XP_003526723.1\| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max]	Back alignment and taxonomy information

>gi\|356509231\|ref\|XP_003523354.1\| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max]	Back alignment and taxonomy information

>gi\|224118310\|ref\|XP_002317787.1\| predicted protein [Populus trichocarpa] gi\|222858460\|gb\|EEE96007.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449456987\|ref\|XP_004146230.1\| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis sativus] gi\|449517605\|ref\|XP_004165836.1\| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225455340\|ref\|XP_002272224.1\| PREDICTED: KH domain-containing protein At4g18375-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255561850\|ref\|XP_002521934.1\| nucleic acid binding protein, putative [Ricinus communis] gi\|223538859\|gb\|EEF40458.1\| nucleic acid binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|302143921\|emb\|CBI23026.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|30696273\|ref\|NP_200118.3\| RNA-binding KH domain-containing protein [Arabidopsis thaliana] gi\|17065220\|gb\|AAL32764.1\| RNA-binding protein-like [Arabidopsis thaliana] gi\|30725478\|gb\|AAP37761.1\| At5g53060 [Arabidopsis thaliana] gi\|332008915\|gb\|AED96298.1\| RNA-binding KH domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|8809595\|dbj\|BAA97146.1\| RNA-binding protein-like [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		678
TAIR\|locus:2168367		652	RCF3 "AT5G53060" [Arabidopsis	0.862	0.897	0.591	1.2e-190
TAIR\|locus:2150956		548	AT5G15270 "AT5G15270" [Arabido	0.439	0.543	0.335	6.8e-51
TAIR\|locus:2161413		644	AT5G46190 "AT5G46190" [Arabido	0.834	0.878	0.277	9.6e-40
TAIR\|locus:2017612		621	AT1G51580 "AT1G51580" [Arabido	0.278	0.304	0.398	4.5e-37
TAIR\|locus:2035807		479	AT1G14170 "AT1G14170" [Arabido	0.224	0.317	0.423	5.4e-37
TAIR\|locus:2831364		606	AT4G18375 "AT4G18375" [Arabido	0.603	0.674	0.265	2.9e-30
TAIR\|locus:2066020		632	AT2G22600 "AT2G22600" [Arabido	0.233	0.25	0.303	9.7e-27
TAIR\|locus:2084908		577	FLK "AT3G04610" [Arabidopsis t	0.467	0.549	0.282	2.6e-21
TAIR\|locus:2120755		495	PEP "AT4G26000" [Arabidopsis t	0.488	0.668	0.252	4.8e-18
ZFIN\|ZDB-GENE-050522-157		350	pcbp3 "poly(rC) binding protei	0.445	0.862	0.258	2.2e-13

TAIR\|locus:2168367 RCF3 "AT5G53060" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1734 (615.5 bits), Expect = 1.2e-190, Sum P(2) = 1.2e-190
 Identities = 359/607 (59%), Positives = 443/607 (72%)

Query:    73 PSLMVTTTYRILCHDMXXXXXXXXXXXXXXXXRQHTGAWINVHELIPGDEERIIEISDTR 132
             P  M TTTYRILCHD                 RQHTGAWINVHEL+PGD ERIIEISD R
Sbjct:    62 PETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNR 121

Query:   133 RRDPEGRMPSFSPAQEALFLIHDRILESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRV 192
             RRDP+GRMPSFSPAQEALF +HDRILES+                             RV
Sbjct:   122 RRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGG-----GRV 176

Query:   193 ATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDIN 252
              TR+VVSRMHVGCLLGKGGKIIEQMR+ETKT IRILPR+ +LPRCVS+SEEIVQ+VG++N
Sbjct:   177 VTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELN 236

Query:   253 NVKNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFP--DDDYVPHMNNTARRPSMDGARF 310
              VKNA+AI+SSRLRESQHRDRS+F GR HSP+R F    DDY+P +    RR S D  RF
Sbjct:   237 AVKNALAIVSSRLRESQHRDRSNFQGRSHSPERSFAAAGDDYMPQL----RRQSSD--RF 290

Query:   311 SGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIV 370
                N+R+NN+  R S Y+ EA A P+ ++V   Y E+LVF++LCP DK+ RV+GES+GI+
Sbjct:   291 PRGNFRNNNFSSRQSNYAEEAPAVPVGENV---YSEELVFQILCPADKIVRVVGESQGII 347

Query:   371 ELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDN 430
             +LLQNEIGVD++V+DPV GSDEQIITISSEE PDD  FPAQEALLHIQT+I+DL  DKDN
Sbjct:   348 DLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDPFFPAQEALLHIQTQIIDLIPDKDN 407

Query:   431 IITTRLLVPSSEIGCLEGRDGSLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQ 490
             +ITTRLLVPS +  CLEG+ GS+SE+ R TG ++QIL+REE+P C S  D ++QI GEI+
Sbjct:   408 LITTRLLVPSRDSICLEGKAGSVSEISRLTGTSVQILAREEIPRCASINDVVIQITGEIR 467

Query:   491 AARDALVEVTTRLRSYLYRDFFQKETPPSSTGPTGSALVVEAASPIDITPAREVQTVTDP 550
             AAR+ALVE+T  LRS+++++  QKETPP+ST  TG    V  A  +++  +       + 
Sbjct:   468 AAREALVELTLLLRSHMFKELSQKETPPASTSTTGPLEGV--AGVMEVASSNNTIQSREG 525

Query:   551 PAATHQSVQIPATSQPS-KEAAGSVSETVKQNESERREDVPTVINRVPLPLVTRSTLEVV 609
             P +++ ++Q  +T  P  KE  GSV+   K  ESE RE+VP   +R+ +PLVTRSTLEVV
Sbjct:   526 PTSSNLNLQQVSTILPQFKEGFGSVA---KAGESEHREEVPVTTSRMAVPLVTRSTLEVV 582

Query:   610 LPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQG 669
             LP+  VPKL+TKS+  L + SE SGASV++VE +PE TQ II+ISGTPEQ ERAQS+LQG
Sbjct:   583 LPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLLQG 642

Query:   670 FILSTQD 676
             FILS Q+
Sbjct:   643 FILSIQE 649

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2150956 AT5G15270 "AT5G15270" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2161413 AT5G46190 "AT5G46190" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2017612 AT1G51580 "AT1G51580" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2035807 AT1G14170 "AT1G14170" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2831364 AT4G18375 "AT4G18375" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066020 AT2G22600 "AT2G22600" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2084908 FLK "AT3G04610" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2120755 PEP "AT4G26000" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050522-157 pcbp3 "poly(rC) binding protein 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		678
cd02396		65	cd02396, PCBP_like_KH, K homology RNA-binding doma	2e-17
cd02396		65	cd02396, PCBP_like_KH, K homology RNA-binding doma	4e-14
cd02396		65	cd02396, PCBP_like_KH, K homology RNA-binding doma	5e-12
cd00105		64	cd00105, KH-I, K homology RNA-binding domain, type	4e-09
cd00105		64	cd00105, KH-I, K homology RNA-binding domain, type	1e-08
pfam00013		59	pfam00013, KH_1, KH domain	1e-08
pfam13014		42	pfam13014, KH_3, KH domain	3e-08
pfam00013		59	pfam00013, KH_1, KH domain	7e-08
cd02396		65	cd02396, PCBP_like_KH, K homology RNA-binding doma	1e-06
smart00322		68	smart00322, KH, K homology RNA-binding domain	6e-06
cd00105		64	cd00105, KH-I, K homology RNA-binding domain, type	2e-05
pfam00013		59	pfam00013, KH_1, KH domain	2e-05
pfam13014		42	pfam13014, KH_3, KH domain	1e-04
smart00322		68	smart00322, KH, K homology RNA-binding domain	1e-04
cd00105		64	cd00105, KH-I, K homology RNA-binding domain, type	2e-04
cd00105		64	cd00105, KH-I, K homology RNA-binding domain, type	2e-04
pfam00013		59	pfam00013, KH_1, KH domain	2e-04
cd02394		62	cd02394, vigilin_like_KH, K homology RNA-binding d	0.002

>gnl\|CDD\|239089 cd02396, PCBP_like_KH, K homology RNA-binding domain, PCBP_like	Back alignment and domain information

 Score = 76.4 bits (189), Expect = 2e-17
 Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 12/76 (15%)

Query: 80  TYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELI-PGDEERIIEISDTRRRDPEG 138
           T R+L    +AG +IGK GS IK IR+ TGA I V + + PG  ER++ IS         
Sbjct: 1   TLRLLVPSSQAGSIIGKGGSTIKEIREETGAKIRVSKSVLPGSTERVVTISGK------- 53

Query: 139 RMPSFSPAQEALFLIH 154
                S  Q+AL LI 
Sbjct: 54  ----PSAVQKALLLIL 65

Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. Length = 65

>gnl\|CDD\|239089 cd02396, PCBP_like_KH, K homology RNA-binding domain, PCBP_like	Back alignment and domain information

>gnl\|CDD\|239089 cd02396, PCBP_like_KH, K homology RNA-binding domain, PCBP_like	Back alignment and domain information

>gnl\|CDD\|238053 cd00105, KH-I, K homology RNA-binding domain, type I	Back alignment and domain information

>gnl\|CDD\|238053 cd00105, KH-I, K homology RNA-binding domain, type I	Back alignment and domain information

>gnl\|CDD\|215657 pfam00013, KH_1, KH domain	Back alignment and domain information

>gnl\|CDD\|221895 pfam13014, KH_3, KH domain	Back alignment and domain information

>gnl\|CDD\|215657 pfam00013, KH_1, KH domain	Back alignment and domain information

>gnl\|CDD\|239089 cd02396, PCBP_like_KH, K homology RNA-binding domain, PCBP_like	Back alignment and domain information

>gnl\|CDD\|197652 smart00322, KH, K homology RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|238053 cd00105, KH-I, K homology RNA-binding domain, type I	Back alignment and domain information

>gnl\|CDD\|215657 pfam00013, KH_1, KH domain	Back alignment and domain information

>gnl\|CDD\|221895 pfam13014, KH_3, KH domain	Back alignment and domain information

>gnl\|CDD\|197652 smart00322, KH, K homology RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|238053 cd00105, KH-I, K homology RNA-binding domain, type I	Back alignment and domain information

>gnl\|CDD\|238053 cd00105, KH-I, K homology RNA-binding domain, type I	Back alignment and domain information

>gnl\|CDD\|215657 pfam00013, KH_1, KH domain	Back alignment and domain information

>gnl\|CDD\|239087 cd02394, vigilin_like_KH, K homology RNA-binding domain_vigilin_like	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		678
KOG2193		584	consensus IGF-II mRNA-binding protein IMP, contain	100.0
KOG2190		485	consensus PolyC-binding proteins alphaCP-1 and rel	100.0
KOG1676		600	consensus K-homology type RNA binding proteins [RN	100.0
KOG1676		600	consensus K-homology type RNA binding proteins [RN	100.0
KOG2192		390	consensus PolyC-binding hnRNP-K protein HRB57A/hnR	100.0
KOG2193		584	consensus IGF-II mRNA-binding protein IMP, contain	100.0
KOG2190		485	consensus PolyC-binding proteins alphaCP-1 and rel	99.97
KOG2192		390	consensus PolyC-binding hnRNP-K protein HRB57A/hnR	99.97
KOG2191		402	consensus RNA-binding protein NOVA1/PASILLA and re	99.94
KOG2191		402	consensus RNA-binding protein NOVA1/PASILLA and re	99.89
KOG2208		753	consensus Vigilin [Lipid transport and metabolism]	99.52
TIGR03665		172	arCOG04150 arCOG04150 universal archaeal KH domain	99.51
TIGR03665		172	arCOG04150 arCOG04150 universal archaeal KH domain	99.48
PRK13763		180	putative RNA-processing protein; Provisional	99.48
PRK13763		180	putative RNA-processing protein; Provisional	99.47
KOG2208		753	consensus Vigilin [Lipid transport and metabolism]	99.46
cd02396		65	PCBP_like_KH K homology RNA-binding domain, PCBP_l	99.38
cd02394		62	vigilin_like_KH K homology RNA-binding domain_vigi	99.31
PF00013		60	KH_1: KH domain syndrome, contains KH motifs.; Int	99.27
cd02393		61	PNPase_KH Polynucleotide phosphorylase (PNPase) K	99.24
cd00105		64	KH-I K homology RNA-binding domain, type I. KH bin	99.24
cd02396		65	PCBP_like_KH K homology RNA-binding domain, PCBP_l	99.18
KOG2279		608	consensus Kinase anchor protein AKAP149, contains	99.16
KOG2279		608	consensus Kinase anchor protein AKAP149, contains	99.02
cd02394		62	vigilin_like_KH K homology RNA-binding domain_vigi	99.01
cd02393		61	PNPase_KH Polynucleotide phosphorylase (PNPase) K	99.01
PF00013		60	KH_1: KH domain syndrome, contains KH motifs.; Int	98.98
cd00105		64	KH-I K homology RNA-binding domain, type I. KH bin	98.89
smart00322		69	KH K homology RNA-binding domain.	98.88
PF13014		43	KH_3: KH domain	98.86
PF13014		43	KH_3: KH domain	98.77
COG1094		194	Predicted RNA-binding protein (contains KH domains	98.61
smart00322		69	KH K homology RNA-binding domain.	98.55
COG1094		194	Predicted RNA-binding protein (contains KH domains	98.46
cd02395		120	SF1_like-KH Splicing factor 1 (SF1) K homology RNA	98.19
KOG2113		394	consensus Predicted RNA binding protein, contains	98.16
cd02395		120	SF1_like-KH Splicing factor 1 (SF1) K homology RNA	97.92
KOG2113		394	consensus Predicted RNA binding protein, contains	97.8
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	97.56
PRK08406		140	transcription elongation factor NusA-like protein;	97.49
KOG0119		554	consensus Splicing factor 1/branch point binding p	97.49
PRK08406		140	transcription elongation factor NusA-like protein;	97.45
TIGR02696		719	pppGpp_PNP guanosine pentaphosphate synthetase I/p	97.43
TIGR02696		719	pppGpp_PNP guanosine pentaphosphate synthetase I/p	97.38
TIGR03591		684	polynuc_phos polyribonucleotide nucleotidyltransfe	97.09
TIGR01952		141	nusA_arch NusA family KH domain protein, archaeal.	96.99
TIGR03591		684	polynuc_phos polyribonucleotide nucleotidyltransfe	96.87
TIGR01952		141	nusA_arch NusA family KH domain protein, archaeal.	96.71
KOG1588		259	consensus RNA-binding protein Sam68 and related KH	96.64
PLN00207		891	polyribonucleotide nucleotidyltransferase; Provisi	96.58
COG1185		692	Pnp Polyribonucleotide nucleotidyltransferase (pol	96.49
KOG0119		554	consensus Splicing factor 1/branch point binding p	96.36
KOG1588		259	consensus RNA-binding protein Sam68 and related KH	96.34
KOG2814		345	consensus Transcription coactivator complex, P50 c	96.31
PF14611		210	SLS: Mitochondrial inner-membrane-bound regulator	96.29
cd02134		61	NusA_KH NusA_K homology RNA-binding domain (KH). N	96.18
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	96.15
PRK00106		535	hypothetical protein; Provisional	96.15
PLN00207		891	polyribonucleotide nucleotidyltransferase; Provisi	96.11
COG0195		190	NusA Transcription elongation factor [Transcriptio	95.95
COG0195		190	NusA Transcription elongation factor [Transcriptio	95.92
PRK12704		520	phosphodiesterase; Provisional	95.92
KOG2814		345	consensus Transcription coactivator complex, P50 c	95.86
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	95.79
COG1185		692	Pnp Polyribonucleotide nucleotidyltransferase (pol	95.78
cd02134		61	NusA_KH NusA_K homology RNA-binding domain (KH). N	95.55
PRK04163		235	exosome complex RNA-binding protein Rrp4; Provisio	95.29
PRK11824		693	polynucleotide phosphorylase/polyadenylase; Provis	95.11
PRK04163		235	exosome complex RNA-binding protein Rrp4; Provisio	95.02
TIGR01953		341	NusA transcription termination factor NusA. This m	94.96
PRK12328		374	nusA transcription elongation factor NusA; Provisi	94.85
COG5176		269	MSL5 Splicing factor (branch point binding protein	94.65
PRK12328		374	nusA transcription elongation factor NusA; Provisi	94.56
PRK12327		362	nusA transcription elongation factor NusA; Provisi	94.54
PRK11824		693	polynucleotide phosphorylase/polyadenylase; Provis	94.53
KOG4369		2131	consensus RTK signaling protein MASK/UNC-44 [Signa	94.51
TIGR01953		341	NusA transcription termination factor NusA. This m	94.49
PRK00468		75	hypothetical protein; Provisional	94.49
COG5176		269	MSL5 Splicing factor (branch point binding protein	94.39
PF14611		210	SLS: Mitochondrial inner-membrane-bound regulator	94.31
PRK12329		449	nusA transcription elongation factor NusA; Provisi	94.28
COG1837		76	Predicted RNA-binding protein (contains KH domain)	94.07
PRK00468		75	hypothetical protein; Provisional	93.77
PRK02821		77	hypothetical protein; Provisional	93.69
PRK00106		535	hypothetical protein; Provisional	93.57
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	93.55
KOG1067		760	consensus Predicted RNA-binding polyribonucleotide	93.41
PRK12327		362	nusA transcription elongation factor NusA; Provisi	93.4
PRK12704		520	phosphodiesterase; Provisional	93.35
PRK09202		470	nusA transcription elongation factor NusA; Validat	93.32
PRK02821		77	hypothetical protein; Provisional	93.31
PRK01064		78	hypothetical protein; Provisional	92.74
COG1837		76	Predicted RNA-binding protein (contains KH domain)	92.63
PRK09202		470	nusA transcription elongation factor NusA; Validat	92.62
PRK01064		78	hypothetical protein; Provisional	92.47
PRK12329		449	nusA transcription elongation factor NusA; Provisi	92.39
PRK12705		508	hypothetical protein; Provisional	91.36
PF13083		73	KH_4: KH domain; PDB: 3GKU_B.	88.45
KOG1067		760	consensus Predicted RNA-binding polyribonucleotide	88.32
KOG2874		356	consensus rRNA processing protein [Translation, ri	88.13
KOG3273		252	consensus Predicted RNA-binding protein Pno1p inte	86.75
PRK12705		508	hypothetical protein; Provisional	85.67
cd02409		68	KH-II KH-II (K homology RNA-binding domain, type I	84.58
COG5166		657	Uncharacterized conserved protein [Function unknow	84.33
PF13083		73	KH_4: KH domain; PDB: 3GKU_B.	84.32
cd02409		68	KH-II KH-II (K homology RNA-binding domain, type I	83.62
COG1097		239	RRP4 RNA-binding protein Rrp4 and related proteins	82.8
KOG3273		252	consensus Predicted RNA-binding protein Pno1p inte	82.7
PF13184		69	KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW	82.33
COG1097		239	RRP4 RNA-binding protein Rrp4 and related proteins	82.3
COG1855		604	ATPase (PilT family) [General function prediction	80.86
KOG4369		2131	consensus RTK signaling protein MASK/UNC-44 [Signa	80.58

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=3.6e-40  Score=332.93  Aligned_cols=357  Identities=25%  Similarity=0.394  Sum_probs=270.1

Q ss_pred             CccEEEEEEeeCceeceecccCchhHHhHHhHhCCEEEEcc-CCCCCCccEEEEecCCCCCCCCCCCCCchHHHHHHHHH
Q 005758           76 MVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHE-LIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIH  154 (678)
Q Consensus        76 ~~~~~~~ilip~~~~g~IIGk~G~~Ik~i~~~tga~I~v~~-~~~~~~ervv~i~G~~~~~~~~~~~~~~~~~~a~~~i~  154 (678)
                      ....++|+|+|..++|.||||.|+|||.|...|.|+|+|.. .+.|..|++|+|.++.    ||       +.+|+.+|+
T Consensus       196 ~~D~PlR~lVptqyvgaIIGkeG~TIknItkqTqsriD~hrken~Gaaek~itvh~tp----Eg-------~s~Ac~~IL  264 (584)
T KOG2193|consen  196 LKDWPLRLLVPTQYVGAIIGKEGATIKNITKQTQSRIDVHRKENAGAAEKIITVHSTP----EG-------TSKACKMIL  264 (584)
T ss_pred             ccCcceeeeeccceeEEEecCCCccccCcchhhhheeeeeecccCCcccCceEEecCc----cc-------hHHHHHHHH
Confidence            34689999999999999999999999999999999999964 5668899999999974    33       457888888


Q ss_pred             HHhhccCCCCCCCCCcccccCCCCCCCCCCcCCCCCceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCC
Q 005758          155 DRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSL  234 (678)
Q Consensus       155 ~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~  234 (678)
                      +.+..+.....+                      ...+.++++..+.++|+||||.|.+||+|+++||++|.|.+..+ +
T Consensus       265 eimqkEA~~~k~----------------------~~e~pLk~lAHN~lvGRLIGKeGrnlKkIeq~TgTkITis~lqe-l  321 (584)
T KOG2193|consen  265 EIMQKEAVDDKV----------------------AEEIPLKILAHNNLVGRLIGKEGRNLKKIEQDTGTKITISKLQE-L  321 (584)
T ss_pred             HHHHHhhhccch----------------------hhhcchhhhhhcchhhhhhhhccccHHHHHhhcCCceeeeehhh-h
Confidence            887665443321                      34678999999999999999999999999999999999987533 3


Q ss_pred             CCccCCCCceeeccCCHHHHHHHHHHHHHHHhcccccCCCC------CCCCCCCCCC--cCCCCCCCCCCCCCCCCCCCC
Q 005758          235 PRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQHRDRSH------FHGRLHSPDR--FFPDDDYVPHMNNTARRPSMD  306 (678)
Q Consensus       235 p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~~~~~~~~------~~~~~~~p~~--~~~~~~~~p~~~~~~~~~~~~  306 (678)
                      ..  ...||+|++.|+.++|..|..+|..+|+++...|...      +.+-++.|.-  |.+...+.|.           
T Consensus       322 s~--ynpERTItVkGsiEac~~AE~eImkKlre~yEnDl~a~s~q~~l~P~l~~~~l~~f~ssS~~~~P-----------  388 (584)
T KOG2193|consen  322 SL--YNPERTITVKGSIEACVQAEAEIMKKLRECYENDLAAMSLQCHLPPGLNLPALGLFPSSSAVSPP-----------  388 (584)
T ss_pred             cc--cCccceEEecccHHHHHHHHHHHHHHHHHHHhhhHHHhhccCCCCcccCccccCCCCcccccCCC-----------
Confidence            32  2569999999999999999999999999987665321      1111111110  1111111000           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCceEEEEEeeccccceEEeCCchHHHHHHHHhCCeEEEeCC
Q 005758          307 GARFSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADP  386 (678)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~vg~IIG~~G~~I~~I~~~tg~~I~i~~~  386 (678)
                        .|   .+....            .+++..  ...-+++...+++.||...+|.|||++|.+|++|...+|+.|+|..+
T Consensus       389 --h~---~Ps~v~------------~a~p~~--~~hq~pe~e~V~~fiP~~~vGAiIGkkG~hIKql~RfagASiKIapp  449 (584)
T KOG2193|consen  389 --HF---PPSPVT------------FASPYP--LFHQNPEQEQVRMFIPAQAVGAIIGKKGQHIKQLSRFAGASIKIAPP  449 (584)
T ss_pred             --CC---CCCccc------------cCCCch--hhhcCcchhheeeeccHHHHHHHHhhcchhHHHHHHhccceeeecCC
Confidence              00   000000            000000  00012245678999999999999999999999999999999999776


Q ss_pred             -CCCCCCcEEEEecCCCCCCcchHHHHHHHHHHHHhhccC---CCCCCceEEEEeecCCcceeeecCCch-hHHHHhhcC
Q 005758          387 -VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLG---ADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG  461 (678)
Q Consensus       387 -~~~~~er~v~I~G~~g~~~~~~~a~~~i~~i~~~i~~~~---~~~~~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tg  461 (678)
                       .++..+|.|+|+|   ++++.++|+.-   ++.++.+..   +..+..+...+-||.+.+|+||||||. ++||+..|+
T Consensus       450 E~pdvseRMViItG---ppeaqfKAQgr---ifgKikEenf~~PkeevklethirVPs~~aGRvIGKGGktVnELQnlt~  523 (584)
T KOG2193|consen  450 EIPDVSERMVIITG---PPEAQFKAQGR---IFGKIKEENFFLPKEEVKLETHIRVPSSAAGRVIGKGGKTVNELQNLTS  523 (584)
T ss_pred             CCCCcceeEEEecC---ChHHHHhhhhh---hhhhhhhhccCCchhhheeeeeeeccchhhhhhhccccccHHHHhcccc
Confidence             4778899999994   56788888774   455555432   234556788899999999999999999 999999999


Q ss_pred             CeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhhh
Q 005758          462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYL  507 (678)
Q Consensus       462 a~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~~~~  507 (678)
                      |.|.| |+|+.|+-  ++..+|.|.|..-+.+.|...|.+++.++.
T Consensus       524 AeV~v-PrdqtpdE--nd~vivriiGhfyatq~aQrki~~iv~qvk  566 (584)
T KOG2193|consen  524 AEVVV-PRDQTPDE--NDQVIVRIIGHFYATQNAQRKIAHIVNQVK  566 (584)
T ss_pred             ceEEc-cccCCCCc--cceeeeeeechhhcchHHHHHHHHHHHHHH
Confidence            99998 56666653  456678999999999999999999998753

>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]	Back alignment and domain information

>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]	Back alignment and domain information

>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG2208 consensus Vigilin [Lipid transport and metabolism]	Back alignment and domain information

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>PRK13763 putative RNA-processing protein; Provisional	Back alignment and domain information

>PRK13763 putative RNA-processing protein; Provisional	Back alignment and domain information

>KOG2208 consensus Vigilin [Lipid transport and metabolism]	Back alignment and domain information

>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like	Back alignment and domain information

>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like	Back alignment and domain information

>PF00013 KH_1: KH domain syndrome, contains KH motifs	Back alignment and domain information

>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH)	Back alignment and domain information

>cd00105 KH-I K homology RNA-binding domain, type I	Back alignment and domain information

>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like	Back alignment and domain information

>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]	Back alignment and domain information

>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]	Back alignment and domain information

>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like	Back alignment and domain information

>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH)	Back alignment and domain information

>PF00013 KH_1: KH domain syndrome, contains KH motifs	Back alignment and domain information

>cd00105 KH-I K homology RNA-binding domain, type I	Back alignment and domain information

>smart00322 KH K homology RNA-binding domain	Back alignment and domain information

>PF13014 KH_3: KH domain	Back alignment and domain information

>PF13014 KH_3: KH domain	Back alignment and domain information

>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]	Back alignment and domain information

>smart00322 KH K homology RNA-binding domain	Back alignment and domain information

>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]	Back alignment and domain information

>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH)	Back alignment and domain information

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]	Back alignment and domain information

>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH)	Back alignment and domain information

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK08406 transcription elongation factor NusA-like protein; Validated	Back alignment and domain information

>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]	Back alignment and domain information

>PRK08406 transcription elongation factor NusA-like protein; Validated	Back alignment and domain information

>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	Back alignment and domain information

>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	Back alignment and domain information

>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase	Back alignment and domain information

>TIGR01952 nusA_arch NusA family KH domain protein, archaeal	Back alignment and domain information

>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase	Back alignment and domain information

>TIGR01952 nusA_arch NusA family KH domain protein, archaeal	Back alignment and domain information

>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification]	Back alignment and domain information

>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional	Back alignment and domain information

>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]	Back alignment and domain information

>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification]	Back alignment and domain information

>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription]	Back alignment and domain information

>PF14611 SLS: Mitochondrial inner-membrane-bound regulator	Back alignment and domain information

>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH)	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional	Back alignment and domain information

>COG0195 NusA Transcription elongation factor [Transcription]	Back alignment and domain information

>COG0195 NusA Transcription elongation factor [Transcription]	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription]	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH)	Back alignment and domain information

>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional	Back alignment and domain information

>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional	Back alignment and domain information

>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional	Back alignment and domain information

>TIGR01953 NusA transcription termination factor NusA	Back alignment and domain information

>PRK12328 nusA transcription elongation factor NusA; Provisional	Back alignment and domain information

>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]	Back alignment and domain information

>PRK12328 nusA transcription elongation factor NusA; Provisional	Back alignment and domain information

>PRK12327 nusA transcription elongation factor NusA; Provisional	Back alignment and domain information

>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional	Back alignment and domain information

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]	Back alignment and domain information

>TIGR01953 NusA transcription termination factor NusA	Back alignment and domain information

>PRK00468 hypothetical protein; Provisional	Back alignment and domain information

>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]	Back alignment and domain information

>PF14611 SLS: Mitochondrial inner-membrane-bound regulator	Back alignment and domain information

>PRK12329 nusA transcription elongation factor NusA; Provisional	Back alignment and domain information

>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only]	Back alignment and domain information

>PRK00468 hypothetical protein; Provisional	Back alignment and domain information

>PRK02821 hypothetical protein; Provisional	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]	Back alignment and domain information

>PRK12327 nusA transcription elongation factor NusA; Provisional	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>PRK09202 nusA transcription elongation factor NusA; Validated	Back alignment and domain information

>PRK02821 hypothetical protein; Provisional	Back alignment and domain information

>PRK01064 hypothetical protein; Provisional	Back alignment and domain information

>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only]	Back alignment and domain information

>PRK09202 nusA transcription elongation factor NusA; Validated	Back alignment and domain information

>PRK01064 hypothetical protein; Provisional	Back alignment and domain information

>PRK12329 nusA transcription elongation factor NusA; Provisional	Back alignment and domain information

>PRK12705 hypothetical protein; Provisional	Back alignment and domain information

>PF13083 KH_4: KH domain; PDB: 3GKU_B	Back alignment and domain information

>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]	Back alignment and domain information

>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG3273 consensus Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK12705 hypothetical protein; Provisional	Back alignment and domain information

>cd02409 KH-II KH-II (K homology RNA-binding domain, type II)	Back alignment and domain information

>COG5166 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13083 KH_4: KH domain; PDB: 3GKU_B	Back alignment and domain information

>cd02409 KH-II KH-II (K homology RNA-binding domain, type II)	Back alignment and domain information

>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG3273 consensus Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13184 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW_A 1K0R_B 2ASB_A	Back alignment and domain information

>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG1855 ATPase (PilT family) [General function prediction only]	Back alignment and domain information

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		678
2jzx_A		160	Pcbp2 Kh1-Kh2 Domains Length = 160		1e-05

>pdb|2JZX|A Chain A, Pcbp2 Kh1-Kh2 Domains Length = 160

Back alignment and structure

Iteration: 1

Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 11/125 (8%) Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407 L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + + Sbjct: 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 59 Query: 408 FPAQEALL-----HIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461 F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG Sbjct: 60 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 119 Query: 462 ANIQI 466 A +Q+ Sbjct: 120 AQVQV 124

PyMOL of 2jzx

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		678
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	1e-37
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	2e-23
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	4e-11
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	2e-09
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	3e-05
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	4e-35
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	2e-24
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	3e-11
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	9e-06
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	1e-05
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	2e-04
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	1e-34
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	8e-22
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	7e-15
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	4e-10
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	5e-07
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	3e-05
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	2e-31
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	1e-25
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	8e-10
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	2e-04
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	2e-04
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	9e-30
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	3e-19
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	5e-12
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	8e-08
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	5e-04
1zzk_A		82	Heterogeneous nuclear ribonucleoprotein K; KH domi	2e-15
1zzk_A		82	Heterogeneous nuclear ribonucleoprotein K; KH domi	1e-10
1zzk_A		82	Heterogeneous nuclear ribonucleoprotein K; KH domi	5e-09
1zzk_A		82	Heterogeneous nuclear ribonucleoprotein K; KH domi	1e-07
1zzk_A		82	Heterogeneous nuclear ribonucleoprotein K; KH domi	2e-06
1j5k_A		89	Heterogeneous nuclear ribonucleoprotein K; single-	5e-15
1j5k_A		89	Heterogeneous nuclear ribonucleoprotein K; single-	3e-10
1j5k_A		89	Heterogeneous nuclear ribonucleoprotein K; single-	2e-09
1j5k_A		89	Heterogeneous nuclear ribonucleoprotein K; single-	3e-07
1j5k_A		89	Heterogeneous nuclear ribonucleoprotein K; single-	4e-06
1wvn_A		82	Poly(RC)-binding protein 1; KH domain, RNA binding	6e-14
1wvn_A		82	Poly(RC)-binding protein 1; KH domain, RNA binding	6e-13
1wvn_A		82	Poly(RC)-binding protein 1; KH domain, RNA binding	5e-08
1wvn_A		82	Poly(RC)-binding protein 1; KH domain, RNA binding	4e-07
1wvn_A		82	Poly(RC)-binding protein 1; KH domain, RNA binding	1e-04
2axy_A		73	Poly(RC)-binding protein 2; protein-DNA complex, D	2e-13
2axy_A		73	Poly(RC)-binding protein 2; protein-DNA complex, D	4e-13
2axy_A		73	Poly(RC)-binding protein 2; protein-DNA complex, D	9e-11
2axy_A		73	Poly(RC)-binding protein 2; protein-DNA complex, D	6e-05
2p2r_A		76	Poly(RC)-binding protein 2; protein-DNA complex, R	3e-12
2p2r_A		76	Poly(RC)-binding protein 2; protein-DNA complex, R	4e-11
2p2r_A		76	Poly(RC)-binding protein 2; protein-DNA complex, R	1e-07
2p2r_A		76	Poly(RC)-binding protein 2; protein-DNA complex, R	3e-07
2p2r_A		76	Poly(RC)-binding protein 2; protein-DNA complex, R	2e-05
2hh3_A		106	KH-type splicing regulatory protein; KH-RNA bindin	3e-11
2hh3_A		106	KH-type splicing regulatory protein; KH-RNA bindin	2e-09
2hh3_A		106	KH-type splicing regulatory protein; KH-RNA bindin	1e-08
2hh3_A		106	KH-type splicing regulatory protein; KH-RNA bindin	2e-05
1x4m_A		94	FAR upstream element binding protein 1; KH domain,	4e-11
1x4m_A		94	FAR upstream element binding protein 1; KH domain,	3e-09
1x4m_A		94	FAR upstream element binding protein 1; KH domain,	6e-09
1x4m_A		94	FAR upstream element binding protein 1; KH domain,	1e-06
1x4n_A		92	FAR upstream element binding protein 1; KH domain,	4e-11
1x4n_A		92	FAR upstream element binding protein 1; KH domain,	2e-08
1x4n_A		92	FAR upstream element binding protein 1; KH domain,	5e-08
1x4n_A		92	FAR upstream element binding protein 1; KH domain,	1e-05
1dtj_A		76	RNA-binding neurooncological ventral antigen 2; KH	6e-11
1dtj_A		76	RNA-binding neurooncological ventral antigen 2; KH	9e-10
1dtj_A		76	RNA-binding neurooncological ventral antigen 2; KH	1e-07
1dtj_A		76	RNA-binding neurooncological ventral antigen 2; KH	1e-06
2opv_A		85	KHSRP protein; KH domain, RNA binding protein, KSR	1e-10
2opv_A		85	KHSRP protein; KH domain, RNA binding protein, KSR	2e-09
2opv_A		85	KHSRP protein; KH domain, RNA binding protein, KSR	2e-06
2opv_A		85	KHSRP protein; KH domain, RNA binding protein, KSR	4e-05
1ec6_A		87	RNA-binding protein NOVA-2; KH domain, alpha-beta	2e-10
1ec6_A		87	RNA-binding protein NOVA-2; KH domain, alpha-beta	7e-10
1ec6_A		87	RNA-binding protein NOVA-2; KH domain, alpha-beta	3e-07
1ec6_A		87	RNA-binding protein NOVA-2; KH domain, alpha-beta	2e-06
2hh2_A		107	KH-type splicing regulatory protein; KH-RNA bindin	9e-09
2hh2_A		107	KH-type splicing regulatory protein; KH-RNA bindin	1e-06
2hh2_A		107	KH-type splicing regulatory protein; KH-RNA bindin	1e-04
2hh2_A		107	KH-type splicing regulatory protein; KH-RNA bindin	3e-04
2e3u_A		219	PH-DIM2P, hypothetical protein PH1566; PRE-ribosom	9e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2cte_A		94	Vigilin; K homology type I domain, RNA-binding, ce	1e-07
2cte_A		94	Vigilin; K homology type I domain, RNA-binding, ce	2e-04
2cte_A		94	Vigilin; K homology type I domain, RNA-binding, ce	8e-04
1we8_A		104	Tudor and KH domain containing protein; structural	1e-06
1we8_A		104	Tudor and KH domain containing protein; structural	1e-06
1we8_A		104	Tudor and KH domain containing protein; structural	1e-04
1tua_A		191	Hypothetical protein APE0754; structural genomics,	2e-06
2ctl_A		97	Vigilin; K homology type I domain, RNA-binding, ce	5e-06
2ctm_A		95	Vigilin; K homology type I domain, RNA-binding, ce	8e-06
2qnd_A		144	FMR1 protein; KH domain, eukaryotic KH domains, ta	7e-05
2dgr_A		83	Ring finger and KH domain-containing protein 1; st	9e-05
2dgr_A		83	Ring finger and KH domain-containing protein 1; st	2e-04
2dgr_A		83	Ring finger and KH domain-containing protein 1; st	3e-04
2ctk_A		104	Vigilin; K homology type I domain, RNA-binding, ce	1e-04
1vig_A		71	Vigilin; RNA-binding protein, ribonucleoprotein; N	3e-04

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Length = 178	Back alignment and structure

 Score =  136 bits (345), Expect = 1e-37
 Identities = 35/196 (17%), Positives = 73/196 (37%), Gaps = 25/196 (12%)

Query: 78  TTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVH---ELIPGDEERIIEISDTRRR 134
               ++L     AG +IGK G  I  +++ TGA I +    +  PG  ER+  I  T   
Sbjct: 5   QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTI-- 62

Query: 135 DPEGRMPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVAT 194
                             I ++I E         +   +      +              
Sbjct: 63  ---------EALNAVHGFIAEKIREMP-------QNVAKTEPVSILQPQTTVNPDRANQV 106

Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
           +++V     G ++GKGG  ++ +  ++   +++  +    P  +++   +V V G+    
Sbjct: 107 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQNRVVTVSGEPEQN 162

Query: 255 KNAVAIISSRLRESQH 270
           + AV +I  +++E   
Sbjct: 163 RKAVELIIQKIQEDPQ 178

PyMOL of 2anr

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Length = 178	Back alignment and structure

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Length = 178	Back alignment and structure

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Length = 178	Back alignment and structure

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Length = 178	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Length = 160	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Length = 160	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Length = 160	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Length = 160	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Length = 160	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Length = 160	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Length = 174	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Length = 174	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Length = 174	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Length = 174	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Length = 174	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Length = 174	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Length = 163	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Length = 163	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Length = 163	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Length = 163	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Length = 163	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164	Back alignment and structure

>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Length = 82	Back alignment and structure

>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Length = 82	Back alignment and structure

>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Length = 82	Back alignment and structure

>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Length = 82	Back alignment and structure

>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Length = 82	Back alignment and structure

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Length = 89	Back alignment and structure

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Length = 89	Back alignment and structure

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Length = 89	Back alignment and structure

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Length = 89	Back alignment and structure

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Length = 89	Back alignment and structure

>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Length = 82	Back alignment and structure

>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Length = 82	Back alignment and structure

>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Length = 82	Back alignment and structure

>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Length = 82	Back alignment and structure

>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Length = 82	Back alignment and structure

>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Length = 73	Back alignment and structure

>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Length = 73	Back alignment and structure

>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Length = 73	Back alignment and structure

>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Length = 73	Back alignment and structure

>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Length = 76	Back alignment and structure

>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Length = 76	Back alignment and structure

>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Length = 76	Back alignment and structure

>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Length = 76	Back alignment and structure

>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Length = 76	Back alignment and structure

>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 106	Back alignment and structure

>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 106	Back alignment and structure

>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 106	Back alignment and structure

>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 106	Back alignment and structure

>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Length = 94	Back alignment and structure

>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Length = 94	Back alignment and structure

>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Length = 94	Back alignment and structure

>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Length = 94	Back alignment and structure

>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Length = 92	Back alignment and structure

>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Length = 92	Back alignment and structure

>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Length = 92	Back alignment and structure

>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Length = 92	Back alignment and structure

>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Length = 76	Back alignment and structure

>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Length = 76	Back alignment and structure

>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Length = 76	Back alignment and structure

>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Length = 76	Back alignment and structure

>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Length = 85	Back alignment and structure

>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Length = 85	Back alignment and structure

>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Length = 85	Back alignment and structure

>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Length = 85	Back alignment and structure

>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Length = 87	Back alignment and structure

>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Length = 87	Back alignment and structure

>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Length = 87	Back alignment and structure

>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Length = 87	Back alignment and structure

>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 107	Back alignment and structure

>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 107	Back alignment and structure

>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 107	Back alignment and structure

>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 107	Back alignment and structure

>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Length = 219	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 94	Back alignment and structure

>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 94	Back alignment and structure

>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 94	Back alignment and structure

>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Length = 104	Back alignment and structure

>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Length = 104	Back alignment and structure

>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Length = 104	Back alignment and structure

>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Length = 191	Back alignment and structure

>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 97	Back alignment and structure

>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 95	Back alignment and structure

>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Length = 144	Back alignment and structure

>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 83	Back alignment and structure

>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 83	Back alignment and structure

>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 83	Back alignment and structure

>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 104	Back alignment and structure

>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Length = 71	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		678
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	99.9
3n89_A		376	Defective in GERM LINE development protein 3, ISO;	99.9
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	99.89
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	99.89
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	99.89
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	99.88
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	99.88
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	99.87
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	99.87
3n89_A		376	Defective in GERM LINE development protein 3, ISO;	99.87
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	99.87
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	99.86
2qnd_A		144	FMR1 protein; KH domain, eukaryotic KH domains, ta	99.72
2qnd_A		144	FMR1 protein; KH domain, eukaryotic KH domains, ta	99.66
1wvn_A		82	Poly(RC)-binding protein 1; KH domain, RNA binding	99.57
1zzk_A		82	Heterogeneous nuclear ribonucleoprotein K; KH domi	99.56
2p2r_A		76	Poly(RC)-binding protein 2; protein-DNA complex, R	99.55
2e3u_A		219	PH-DIM2P, hypothetical protein PH1566; PRE-ribosom	99.55
2e3u_A		219	PH-DIM2P, hypothetical protein PH1566; PRE-ribosom	99.5
1dtj_A		76	RNA-binding neurooncological ventral antigen 2; KH	99.5
1x4n_A		92	FAR upstream element binding protein 1; KH domain,	99.5
1j5k_A		89	Heterogeneous nuclear ribonucleoprotein K; single-	99.48
2hh3_A		106	KH-type splicing regulatory protein; KH-RNA bindin	99.45
1ec6_A		87	RNA-binding protein NOVA-2; KH domain, alpha-beta	99.45
2axy_A		73	Poly(RC)-binding protein 2; protein-DNA complex, D	99.44
2hh2_A		107	KH-type splicing regulatory protein; KH-RNA bindin	99.43
2cte_A		94	Vigilin; K homology type I domain, RNA-binding, ce	99.41
2opv_A		85	KHSRP protein; KH domain, RNA binding protein, KSR	99.4
2dgr_A		83	Ring finger and KH domain-containing protein 1; st	99.4
1x4m_A		94	FAR upstream element binding protein 1; KH domain,	99.38
1we8_A		104	Tudor and KH domain containing protein; structural	99.37
2ctm_A		95	Vigilin; K homology type I domain, RNA-binding, ce	99.37
1tua_A		191	Hypothetical protein APE0754; structural genomics,	99.36
1vig_A		71	Vigilin; RNA-binding protein, ribonucleoprotein; N	99.36
2ctl_A		97	Vigilin; K homology type I domain, RNA-binding, ce	99.34
2axy_A		73	Poly(RC)-binding protein 2; protein-DNA complex, D	99.33
1dtj_A		76	RNA-binding neurooncological ventral antigen 2; KH	99.32
1zzk_A		82	Heterogeneous nuclear ribonucleoprotein K; KH domi	99.31
1tua_A		191	Hypothetical protein APE0754; structural genomics,	99.31
2p2r_A		76	Poly(RC)-binding protein 2; protein-DNA complex, R	99.3
2ctf_A		102	Vigilin; K homology type I domain, RNA-binding, ce	99.29
1wvn_A		82	Poly(RC)-binding protein 1; KH domain, RNA binding	99.28
1ec6_A		87	RNA-binding protein NOVA-2; KH domain, alpha-beta	99.27
2ctk_A		104	Vigilin; K homology type I domain, RNA-binding, ce	99.26
2ctj_A		95	Vigilin; K homology type I domain, RNA-binding, ce	99.26
1j5k_A		89	Heterogeneous nuclear ribonucleoprotein K; single-	99.26
2dgr_A		83	Ring finger and KH domain-containing protein 1; st	99.24
2opv_A		85	KHSRP protein; KH domain, RNA binding protein, KSR	99.24
1x4n_A		92	FAR upstream element binding protein 1; KH domain,	99.23
1x4m_A		94	FAR upstream element binding protein 1; KH domain,	99.2
2ctm_A		95	Vigilin; K homology type I domain, RNA-binding, ce	99.19
2hh2_A		107	KH-type splicing regulatory protein; KH-RNA bindin	99.18
2hh3_A		106	KH-type splicing regulatory protein; KH-RNA bindin	99.17
1we8_A		104	Tudor and KH domain containing protein; structural	99.17
2cte_A		94	Vigilin; K homology type I domain, RNA-binding, ce	99.15
1vig_A		71	Vigilin; RNA-binding protein, ribonucleoprotein; N	99.15
2ctl_A		97	Vigilin; K homology type I domain, RNA-binding, ce	99.14
2ctk_A		104	Vigilin; K homology type I domain, RNA-binding, ce	98.99
2ctj_A		95	Vigilin; K homology type I domain, RNA-binding, ce	98.98
2ctf_A		102	Vigilin; K homology type I domain, RNA-binding, ce	98.97
2cpq_A		91	FragIle X mental retardation syndrome related prot	98.87
2cpq_A		91	FragIle X mental retardation syndrome related prot	98.58
1k1g_A		131	SF1-BO isoform; splicing, branch point sequence, p	98.45
2yqr_A		119	KIAA0907 protein; structure genomics, KH domain, s	98.39
2yqr_A		119	KIAA0907 protein; structure genomics, KH domain, s	98.34
1k1g_A		131	SF1-BO isoform; splicing, branch point sequence, p	98.31
2bl5_A		140	MGC83862 protein, quaking protein; STAR proteins,	97.87
2bl5_A		140	MGC83862 protein, quaking protein; STAR proteins,	97.83
3v69_A		140	Protein filia; RNA-binding, embryogenesis, KH doma	97.77
3u1k_A		630	Polyribonucleotide nucleotidyltransferase 1, MITO;	97.67
3u1k_A		630	Polyribonucleotide nucleotidyltransferase 1, MITO;	97.43
3v69_A		140	Protein filia; RNA-binding, embryogenesis, KH doma	97.14
2cxc_A		144	NUSA; transcription termination, RNA binding prote	97.04
4aid_A		726	Polyribonucleotide nucleotidyltransferase; transfe	97.04
2cxc_A		144	NUSA; transcription termination, RNA binding prote	96.6
4aid_A		726	Polyribonucleotide nucleotidyltransferase; transfe	96.4
2asb_A		251	Transcription elongation protein NUSA; protein-RNA	94.43
1k0r_A		366	NUSA; two component arrangement, S1 domain, two K-	93.86
3cdi_A		723	Polynucleotide phosphorylase; mRNA turnover, RNAse	93.71
1e3p_A		757	Guanosine pentaphosphate synthetase; polyribonucle	93.33
3cdi_A		723	Polynucleotide phosphorylase; mRNA turnover, RNAse	92.28
2asb_A		251	Transcription elongation protein NUSA; protein-RNA	92.15
1k0r_A		366	NUSA; two component arrangement, S1 domain, two K-	92.12
1hh2_P		344	NUSA, N utilization substance protein A; transcrip	91.05
1e3p_A		757	Guanosine pentaphosphate synthetase; polyribonucle	90.61
1hh2_P		344	NUSA, N utilization substance protein A; transcrip	89.4

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}	Back alignment and structure

Probab=99.90  E-value=1.2e-23  Score=200.20  Aligned_cols=160  Identities=18%  Similarity=0.380  Sum_probs=127.5

Q ss_pred             eEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhhhhcc
Q 005758          432 ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRD  510 (678)
Q Consensus       432 ~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~~~~~~~  510 (678)
                      ++.+|+||.+++|.||||+|+ |++|+++|||+|++.++...+   ...++.|+|+|++++|.+|+.+|.+++.+...  
T Consensus         2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~--   76 (164)
T 2jvz_A            2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRERDQ--   76 (164)
T ss_dssp             EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSS---SSSCEEEEEEECHHHHHHHHHHHHHHTTCSSS--
T ss_pred             eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHHhccC--
Confidence            578999999999999999999 999999999999996533222   34789999999999999999999988754210  


Q ss_pred             cCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcccCCCCccccccCcccccCCCc
Q 005758          511 FFQKETPPSSTGPTGSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIPATSQPSKEAAGSVSETVKQNESERREDVP  590 (678)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~  590 (678)
                         .         +             . .++..|                         +.                  
T Consensus        77 ---~---------~-------------~-~~~~~~-------------------------~~------------------   87 (164)
T 2jvz_A           77 ---G---------G-------------F-GDRNEY-------------------------GS------------------   87 (164)
T ss_dssp             ---C---------C-------------C-SSCSSC-------------------------TT------------------
T ss_pred             ---C---------C-------------C-CCcccc-------------------------CC------------------
Confidence               0         0             0 000000                         00                  


Q ss_pred             ccccCCCCCcccccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHH
Q 005758          591 TVINRVPLPLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGF  670 (678)
Q Consensus       591 ~~~~~~~~~~~~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~  670 (678)
                          .      ...+.+|.||.+++|+||||+|++|++|++.|||+|.|++..+...++.|+|+|++++|++|+.+|+++
T Consensus        88 ----~------~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~  157 (164)
T 2jvz_A           88 ----R------IGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDL  157 (164)
T ss_dssp             ----S------CSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHH
T ss_pred             ----C------CCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHH
Confidence                0      013467889999999999999999999999999999998665555689999999999999999999999


Q ss_pred             Hhccc
Q 005758          671 ILSTQ  675 (678)
Q Consensus       671 i~~~~  675 (678)
                      |....
T Consensus       158 i~~~~  162 (164)
T 2jvz_A          158 LQSLR  162 (164)
T ss_dssp             HHHHH
T ss_pred             Hhhhh
Confidence            87643

PyMOL of 2jvz

>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}	Back alignment and structure

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}	Back alignment and structure

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*	Back alignment and structure

>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A	Back alignment and structure

>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A	Back alignment and structure

>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A	Back alignment and structure

>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}	Back alignment and structure

>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B	Back alignment and structure

>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B	Back alignment and structure

>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A	Back alignment and structure

>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A	Back alignment and structure

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A	Back alignment and structure

>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*	Back alignment and structure

>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}	Back alignment and structure

>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A	Back alignment and structure

>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*	Back alignment and structure

>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A	Back alignment and structure

>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A	Back alignment and structure

>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}	Back alignment and structure

>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A	Back alignment and structure

>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}	Back alignment and structure

>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A	Back alignment and structure

>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A	Back alignment and structure

>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1	Back alignment and structure

>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1	Back alignment and structure

>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}	Back alignment and structure

>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}	Back alignment and structure

>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}	Back alignment and structure

>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}	Back alignment and structure

>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A	Back alignment and structure

>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A	Back alignment and structure

>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A	Back alignment and structure

>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A	Back alignment and structure

>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A	Back alignment and structure

>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1	Back alignment and structure

>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A	Back alignment and structure

>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A	Back alignment and structure

>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A	Back alignment and structure

>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A	Back alignment and structure

>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1	Back alignment and structure

>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A	Back alignment and structure

>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A	Back alignment and structure

>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		678
d2axya1		71	d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Hum	8e-13
d2axya1		71	d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Hum	6e-12
d2axya1		71	d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Hum	2e-09
d2axya1		71	d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Hum	4e-05
d2axya1		71	d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Hum	2e-04
d1wvna1		70	d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Huma	6e-12
d1wvna1		70	d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Huma	1e-09
d1wvna1		70	d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Huma	5e-09
d1wvna1		70	d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Huma	3e-07
d1wvna1		70	d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Huma	3e-06
d1we8a_		104	d.51.1.1 (A:) Tudor and KH domain containing prote	2e-11
d1we8a_		104	d.51.1.1 (A:) Tudor and KH domain containing prote	2e-07
d1we8a_		104	d.51.1.1 (A:) Tudor and KH domain containing prote	7e-07
d1we8a_		104	d.51.1.1 (A:) Tudor and KH domain containing prote	2e-06
d1dtja_		74	d.51.1.1 (A:) Neuro-oncological ventral antigen 2,	5e-11
d1dtja_		74	d.51.1.1 (A:) Neuro-oncological ventral antigen 2,	3e-10
d1dtja_		74	d.51.1.1 (A:) Neuro-oncological ventral antigen 2,	2e-08
d1dtja_		74	d.51.1.1 (A:) Neuro-oncological ventral antigen 2,	1e-07
d1dtja_		74	d.51.1.1 (A:) Neuro-oncological ventral antigen 2,	2e-04
d1zzka1		75	d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapie	8e-11
d1zzka1		75	d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapie	7e-10
d1zzka1		75	d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapie	6e-08
d1zzka1		75	d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapie	1e-07
d1zzka1		75	d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapie	2e-04
d1x4ma1		81	d.51.1.1 (A:8-88) Far upstream binding element, FB	2e-10
d1x4ma1		81	d.51.1.1 (A:8-88) Far upstream binding element, FB	1e-07
d1x4ma1		81	d.51.1.1 (A:8-88) Far upstream binding element, FB	4e-07
d1x4ma1		81	d.51.1.1 (A:8-88) Far upstream binding element, FB	7e-06
d1x4ma1		81	d.51.1.1 (A:8-88) Far upstream binding element, FB	0.003
d1x4na1		79	d.51.1.1 (A:8-86) Far upstream binding element, FB	3e-10
d1x4na1		79	d.51.1.1 (A:8-86) Far upstream binding element, FB	8e-10
d1x4na1		79	d.51.1.1 (A:8-86) Far upstream binding element, FB	2e-08
d1x4na1		79	d.51.1.1 (A:8-86) Far upstream binding element, FB	1e-06
d1x4na1		79	d.51.1.1 (A:8-86) Far upstream binding element, FB	5e-05
d1j4wa2		71	d.51.1.1 (A:104-174) Far upstream binding element,	4e-10
d1j4wa2		71	d.51.1.1 (A:104-174) Far upstream binding element,	4e-09
d1j4wa2		71	d.51.1.1 (A:104-174) Far upstream binding element,	7e-06
d1j4wa2		71	d.51.1.1 (A:104-174) Far upstream binding element,	1e-05
d1j4wa2		71	d.51.1.1 (A:104-174) Far upstream binding element,	9e-05
d1j4wa1		74	d.51.1.1 (A:1-74) Far upstream binding element, FB	9e-10
d1j4wa1		74	d.51.1.1 (A:1-74) Far upstream binding element, FB	6e-09
d1j4wa1		74	d.51.1.1 (A:1-74) Far upstream binding element, FB	2e-08
d1j4wa1		74	d.51.1.1 (A:1-74) Far upstream binding element, FB	8e-05
d1j4wa1		74	d.51.1.1 (A:1-74) Far upstream binding element, FB	7e-04
d2ctea1		81	d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T	2e-08
d2ctea1		81	d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T	4e-06
d2ctea1		81	d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T	2e-05
d2ctea1		81	d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T	2e-04
d2ctma1		81	d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T	2e-08
d2ctka1		91	d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [T	7e-08
d2ctka1		91	d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [T	3e-05
d2ctka1		91	d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [T	0.001
d2ctka1		91	d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [T	0.003
d2ctla1		84	d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [T	2e-07
d2ctla1		84	d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [T	2e-04
d2ctla1		84	d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [T	5e-04
d2ctla1		84	d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [T	7e-04
d2ctja1		82	d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [T	9e-07
d1viga_		71	d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId	2e-06
d1viga_		71	d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId	8e-04
d1e3ha4		54	d.52.3.1 (A:579-632) Polynucleotide phosphorylase/	4e-04
d1e3ha4		54	d.52.3.1 (A:579-632) Polynucleotide phosphorylase/	0.001
d1tuaa1		84	d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Ae	0.002
d2ba0a3		84	d.51.1.1 (A:136-219) Exosome complex RNA-binding p	0.003

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Poly(RC)-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (150), Expect = 8e-13
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 13/83 (15%)

Query: 77  VTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDP 136
           VT T R+L H  + G +IGK G  +K +R+ +GA IN+ E      ERII ++       
Sbjct: 2   VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGP----T 55

Query: 137 EGRMPSFSPAQEALFLIHDRILE 159
                      +A  +I D++ E
Sbjct: 56  NA-------IFKAFAMIIDKLEE 71

PyMOL of d2axya1

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70	Back information, alignment and structure

>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70	Back information, alignment and structure

>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70	Back information, alignment and structure

>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70	Back information, alignment and structure

>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70	Back information, alignment and structure

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Length = 104	Back information, alignment and structure

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Length = 104	Back information, alignment and structure

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Length = 104	Back information, alignment and structure

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Length = 104	Back information, alignment and structure

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74	Back information, alignment and structure

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74	Back information, alignment and structure

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74	Back information, alignment and structure

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74	Back information, alignment and structure

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74	Back information, alignment and structure

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75	Back information, alignment and structure

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75	Back information, alignment and structure

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75	Back information, alignment and structure

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75	Back information, alignment and structure

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75	Back information, alignment and structure

>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81	Back information, alignment and structure

>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81	Back information, alignment and structure

>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81	Back information, alignment and structure

>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81	Back information, alignment and structure

>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81	Back information, alignment and structure

>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79	Back information, alignment and structure

>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79	Back information, alignment and structure

>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79	Back information, alignment and structure

>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79	Back information, alignment and structure

>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79	Back information, alignment and structure

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74	Back information, alignment and structure

>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81	Back information, alignment and structure

>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81	Back information, alignment and structure

>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81	Back information, alignment and structure

>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81	Back information, alignment and structure

>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81	Back information, alignment and structure

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91	Back information, alignment and structure

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91	Back information, alignment and structure

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91	Back information, alignment and structure

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91	Back information, alignment and structure

>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 84	Back information, alignment and structure

>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 84	Back information, alignment and structure

>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 84	Back information, alignment and structure

>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 84	Back information, alignment and structure

>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 82	Back information, alignment and structure

>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Length = 54	Back information, alignment and structure

>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Length = 54	Back information, alignment and structure

>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Length = 84	Back information, alignment and structure

>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 84	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		678
d1wvna1		70	Poly(RC)-binding protein 1 {Human (Homo sapiens) [	99.62
d1zzka1		75	HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1j4wa1		74	Far upstream binding element, FBP {Human (Homo sap	99.59
d1j4wa2		71	Far upstream binding element, FBP {Human (Homo sap	99.55
d1x4na1		79	Far upstream binding element, FBP {Mouse (Mus musc	99.54
d1dtja_		74	Neuro-oncological ventral antigen 2, nova-2, KH3 {	99.52
d2ctea1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.5
d2axya1		71	Poly(RC)-binding protein 2 {Human (Homo sapiens) [	99.49
d2ctma1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1x4ma1		81	Far upstream binding element, FBP {Mouse (Mus musc	99.48
d2ctja1		82	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.47
d2ctla1		84	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1viga_		71	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1we8a_		104	Tudor and KH domain containing protein, Tdrkh {Mou	99.42
d1zzka1		75	HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d2axya1		71	Poly(RC)-binding protein 2 {Human (Homo sapiens) [	99.4
d1x4ma1		81	Far upstream binding element, FBP {Mouse (Mus musc	99.38
d1j4wa2		71	Far upstream binding element, FBP {Human (Homo sap	99.37
d1wvna1		70	Poly(RC)-binding protein 1 {Human (Homo sapiens) [	99.37
d1dtja_		74	Neuro-oncological ventral antigen 2, nova-2, KH3 {	99.36
d2ctka1		91	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d2ctfa1		90	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1j4wa1		74	Far upstream binding element, FBP {Human (Homo sap	99.35
d2ctma1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1we8a_		104	Tudor and KH domain containing protein, Tdrkh {Mou	99.3
d1x4na1		79	Far upstream binding element, FBP {Mouse (Mus musc	99.29
d2ctea1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.28
d2cpqa1		78	Fragile X mental retardation syndrome related prot	99.27
d2ctla1		84	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.27
d2ctja1		82	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1viga_		71	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.2
d2ba0a3		84	Exosome complex RNA-binding protein 1, ECR1 {Archa	99.17
d2ctka1		91	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.16
d2ctfa1		90	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.12
d2ba0a3		84	Exosome complex RNA-binding protein 1, ECR1 {Archa	98.98
d2cpqa1		78	Fragile X mental retardation syndrome related prot	98.94
d1tuaa1		84	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	98.85
d2je6i3		69	Exosome complex RNA-binding protein 1, ECR1 {Sulfo	98.67
d2je6i3		69	Exosome complex RNA-binding protein 1, ECR1 {Sulfo	98.63
d2z0sa2		87	Exosome complex RNA-binding protein 1, ECR1 {Aerop	98.62
d2z0sa2		87	Exosome complex RNA-binding protein 1, ECR1 {Aerop	98.48
d1tuaa1		84	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	98.47
d1e3ha4		54	Polynucleotide phosphorylase/guanosine pentaphosph	98.37
d1e3ha4		54	Polynucleotide phosphorylase/guanosine pentaphosph	98.35
d1tuaa2		104	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	98.32
d1tuaa2		104	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	98.21
d1k1ga_		122	RNA splicing factor 1 {Human (Homo sapiens) [TaxId	97.88
d1k1ga_		122	RNA splicing factor 1 {Human (Homo sapiens) [TaxId	97.88
d2bl5a1		134	Quaking protein A (Xqua) {African clawed frog (Xen	97.47
d2bl5a1		134	Quaking protein A (Xqua) {African clawed frog (Xen	97.0
d1hh2p3		68	Transcription factor NusA, C-terminal domains {The	94.55
d2asba3		67	Transcription factor NusA, C-terminal domains {Myc	94.0
d1hh2p3		68	Transcription factor NusA, C-terminal domains {The	91.83
d2asba3		67	Transcription factor NusA, C-terminal domains {Myc	91.75
d2ja9a2		85	Ribosomal RNA-processing protein 40, RRP40 {Saccha	86.32
d2ja9a2		85	Ribosomal RNA-processing protein 40, RRP40 {Saccha	82.68

>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Poly(RC)-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-16  Score=126.25  Aligned_cols=69  Identities=17%  Similarity=0.351  Sum_probs=65.5

Q ss_pred             cEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHh
Q 005758          604 STLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFIL  672 (678)
Q Consensus       604 ~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~  672 (678)
                      .|.+|.||.+++|+|||++|++|++|+++|||+|.|+++.++..+|.|+|+|++++|++|+.||+++|.
T Consensus         2 ~T~~i~VP~~~vg~iIGk~G~~I~~I~~~tga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~is   70 (70)
T d1wvna1           2 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLS   70 (70)
T ss_dssp             EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC
T ss_pred             eEEEEEEChHhcceeECCCChHHHHHHHHcCcEEEEcCCCCCCCcEEEEEEeCHHHHHHHHHHHHHHcC
Confidence            689999999999999999999999999999999999988788889999999999999999999999873

PyMOL of d1wvna1

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}	Back information, alignment and structure

>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}	Back information, alignment and structure

>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

>d1hh2p3 d.52.3.1 (P:277-344) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1hh2p3 d.52.3.1 (P:277-344) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}	Back information, alignment and structure

>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}	Back information, alignment and structure