Citrus Sinensis ID: 005761

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68

MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHQLLPENEPGGSSQTRPFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI

cEEEEEEcccccccccEEEEEEccEEEEEEccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcHHHHHHHHccccccccccccccHHHHHHHHHccEEEccccEEEEcccEEEEEEccccccccEEEEEEccccEEEEcccccccccccccccccccccccEEEEcccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccHHHHHcccccEEEEcccccccccHHHHHHHHHHcccccEEEEEccccHHcccccccEEEEEEEEEccccccccccHHHHHHcccccEEEccccccccccccccccccccccccccEEEEcccccEEEEEEEHHHHHHHHHHHHHcccccEEEEEEEEEEEccEEEEccccccccccccccEEEEccccHHHHHHHHHHccccccEEEccccccccccEEEEEccccccEEEEEccEEEEEcccHHHHHHHHHHHHHHHccc

cEEEEEEcccccccccEEEEEEcccEEEEcccccHHHHHHccccccccccccccccccHHHHHHHHccccccEEEEcccccccccccccccHHHEcEEEEEccHHHcccHHHHHccccccEEEEccHHHHHHHHHHHHHHHHHccEEEccccccccccHcccHHHHHHccccHHHHcccccccccccccccHHHHHHHHccEEEEEccEEEEEccEEEEEEEEcccEHcHHEEEEEEcccEEEEEccccccccccccHHHcccccccEEEEEcccccccccccccccccccccEccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccccccccccEEEEEccccccccHHHHHHHHHccccccEEEEcccHHHHHHccccccEEEEEEEEEccccccHHHHHHHHHHHccccEEEEccccccHHHHHHcHHHHHccccccEEEccccccEEEEEEcHHHHHHHcHHHHccccccccEEEEEEEEEcccEEEEccccccccccccEEEcccccccHHHHHHHHHHcccccHHHHHHHHHHccccEEEEEccccEEEEEEccccEEEEccHHHHHHHHHHHHHHHccc

mkftclcqgggfnfppchilnvsgfhvlfdcpldlsaltvfsplpndFYKAICKensdsqnrqkvekpldandlifaepwyktvnnlhlWNVSFIDVVLisspmgmlglpfltrmegfsAKIYITEAAARIGQLMMEELICMNMEYrqfygaeessgpqwmkwEELELLPSALRKIalgedgselgggcpciaHVKDCISKVqtlrfgeeacYNGILIIKAFSsgldigacnwiisgakgniayisgsnfasghamdfdyraiqgsdlilysdlssldstedidqssfsddnnNWEELMNSLSNYDESVEEMEKLAFICSCAIdsvkaggsvlipiNRVGVFLQLLEQIAIFMEcsslkipiYIISSVAEELLAYTNTIPEWLCKQRqeklfsgdplFAHVKLIKekkihvfpavhspkllmnwqepcivfsphwslrlgptihllrrwsgdhnsllVLENEvdaelavlpfkpisMKVLQCsflsgkklqkVQPLLkilqpklvlfpeewrthvsfsdvtsfsvshysenetihipslkesAELEIAADIASKFQWRMLKQKKLNITrlkgrlfvnhgkhqllpenepggssqtrpflhwgspdpENLLAELSKMGingsvercmtdaesedgftvkvqdpeksMIEVRAAVTVISAADKNLASRIVKAMENILEGI

MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKEnsdsqnrqkvekPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDidqssfsddnnnWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHqllpenepggsSQTRPFLHWGSPDPENLLAELSKMGINGSVERCMTdaesedgftvkvqdpeksMIEVRAAVTVISAADKNLASRIVKAMENILEGI

MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGsdlilysdlssldstedidQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRthvsfsdvtsfsvshYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHQLLPENEPGGSSQTRPFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI

**FTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICK***************DANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDL*************************************MEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGK*****************************************************************MIEVRAAVTVISAADKNLASRIVK*********

MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDF**AI****SDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYR*****************************ALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWE****************EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPK***NWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRT********SFSVSHYSENETIHIPSLKESAELEIAADIA*******************GRLFVNHGKHQ******************WGSPDPENLLAELSKMGING****************VKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI

MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHQLLPE********TRPFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		678	2.2.26 [Sep-21-2011]
A7SBF0		660	Integrator complex subuni	N/A	no	0.911	0.936	0.262	5e-59
Q4R5Z4		637	Integrator complex subuni	N/A	no	0.853	0.908	0.263	3e-55
Q9NV88		658	Integrator complex subuni	yes	no	0.874	0.901	0.259	2e-54
Q5ZKK2		658	Integrator complex subuni	yes	no	0.786	0.810	0.260	3e-54
Q6DFF4		658	Integrator complex subuni	N/A	no	0.898	0.925	0.258	4e-54
Q2KJA6		658	Integrator complex subuni	yes	no	0.787	0.811	0.260	6e-53
Q8K114		658	Integrator complex subuni	yes	no	0.874	0.901	0.258	3e-51
Q54SH0		712	Integrator complex subuni	yes	no	0.688	0.655	0.254	2e-39
Q3MHC2		600	Integrator complex subuni	no	no	0.426	0.481	0.209	2e-08
Q9CWS4		600	Integrator complex subuni	no	no	0.426	0.481	0.209	2e-08

>sp\|A7SBF0\|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis GN=ints9 PE=3 SV=1	Back alignment and function desciption

 Score =  229 bits (584), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 185/706 (26%), Positives = 330/706 (46%), Gaps = 88/706 (12%)

Query: 1   MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLP---NDFYKAICKENS 57
           MK  C+   G     PC +L     +++ DC LD+S +  F+PL    N+ +  +  ++ 
Sbjct: 1   MKLYCV---GHSVSSPCLVLQFKQTNIMLDCGLDMSTVNQFTPLSLVNNEKFSQL--KSW 55

Query: 58  DSQNRQKVEKPLDANDL--------IFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGL 109
            S+  Q++E     N+L        I AEP         L + S +DV+LIS+   ML L
Sbjct: 56  SSRELQEIEGFTAQNNLKEAGGRLFIDAEPEVCPPET-GLIDFSMVDVILISNYHHMLAL 114

Query: 110 PFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169
           PF+T   GF+ KIY TE   +IG+ +M EL+            +  +G  W     +  L
Sbjct: 115 PFITEYSGFNGKIYATEPTIQIGRDLMLELVTFAERV-----PKRRNGNMWKNDNVIRCL 169

Query: 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIG 229
           P+ L ++A  +    L         VK CISK+Q + + E+    GIL + A SSG  +G
Sbjct: 170 PAPLNELANVKSWRVLYSK----HDVKACISKIQAVSYSEKLDLCGILQLSAHSSGFCLG 225

Query: 230 ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFS 289
           + NW++      I+Y+S S+  + H +  +   ++ SD+++ + ++              
Sbjct: 226 SSNWMLESEYEKISYLSPSSSFTTHPLPLNQTVLKNSDVLIITGVTEA------------ 273

Query: 290 DDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQI 349
                       + N D  + E       C+    +++AGG+VL+P    GV   L E +
Sbjct: 274 -----------PIDNPDAMLGEF------CTHLASTLRAGGNVLVPCYPSGVLYDLFECL 316

Query: 350 AIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKK 408
             +++ + L  +PIY IS VA+  LAY+N   EWLC+ +Q K++  +P F H +L+KE +
Sbjct: 317 YTYLDNAKLGMVPIYFISPVADSSLAYSNIYGEWLCQSKQTKVYLPEPPFPHAELLKEAR 376

Query: 409 IHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWS-GDHNSLLVLENEVDAEL 467
           + VF  +H+     +++ PC+VF+ H SLR G  +H +  W    +N+++  E +     
Sbjct: 377 LKVFSNLHN-GFSSSFKTPCVVFTGHPSLRYGDAVHFMEIWGKSGNNTVIFTEPDFPYLE 435

Query: 468 AVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEW---------RTHVSFS 518
           A+ P++P++MK   C         +   LLK LQP+ ++ PE +         RT ++  
Sbjct: 436 ALAPYQPLAMKTCYCPIDPRLNFAQANKLLKELQPRHLVMPESYSRPPVIHPHRTDLTIE 495

Query: 519 DVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNH 578
           D    S++ ++  +   +P  +   ++ IA +++S    + ++   + +  L G L    
Sbjct: 496 D-PGCSLTTFNHLDVAALPISRSFEKVVIANELSSCLHPQHVR-PGVAVATLTGTLVTKD 553

Query: 579 GKHQLLP---------ENEPGGSSQTRPFLH---WGSPDPENLLAELSKMGINGSVERCM 626
            K+ L P          +E G SS  +  L    WG+   ++ +  L K GI        
Sbjct: 554 NKYTLQPLEFLVEPKAGSEGGDSSTNKGQLSRHLWGTVQLDDFVRSLKKRGITD------ 607

Query: 627 TDAESEDG-FTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAM 671
            + ES  G  T+ + + +  ++  R +  +I+  ++ L  RI  A+
Sbjct: 608 VNVESSGGEHTIHLPNDDAMILLDRGSTHIITHGNEELRIRIRDAL 653

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.
Nematostella vectensis (taxid: 45351)

>sp\|Q4R5Z4\|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2 SV=1	Back alignment and function description

>sp\|Q9NV88\|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2	Back alignment and function description

>sp\|Q5ZKK2\|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1	Back alignment and function description

>sp\|Q6DFF4\|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1	Back alignment and function description

>sp\|Q2KJA6\|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1	Back alignment and function description

>sp\|Q8K114\|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1	Back alignment and function description

>sp\|Q54SH0\|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum GN=ints9 PE=3 SV=1	Back alignment and function description

>sp\|Q3MHC2\|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2 SV=1	Back alignment and function description

>sp\|Q9CWS4\|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		678
359495046		774	PREDICTED: integrator complex subunit 9	1.0	0.875	0.626	0.0
255558732		705	conserved hypothetical protein [Ricinus	0.998	0.960	0.587	0.0
449457454		693	PREDICTED: integrator complex subunit 9	0.995	0.974	0.567	0.0
356541557		794	PREDICTED: LOW QUALITY PROTEIN: integrat	0.998	0.852	0.552	0.0
297829304		699	hypothetical protein ARALYDRAFT_896920 [	1.0	0.969	0.515	0.0
449520481		680	PREDICTED: integrator complex subunit 9	0.902	0.9	0.576	0.0
30680341		699	integrator complex subunit 9 [Arabidopsi	1.0	0.969	0.509	0.0
147863921		665	hypothetical protein VITISV_004722 [Viti	0.812	0.828	0.535	1e-175
357456769		536	Integrator complex subunit [Medicago tru	0.716	0.906	0.506	1e-146
357126424		707	PREDICTED: LOW QUALITY PROTEIN: integrat	0.954	0.915	0.395	1e-145

>gi\|359495046\|ref\|XP_002265081.2\| PREDICTED: integrator complex subunit 9 homolog [Vitis vinifera] gi\|296081277\|emb\|CBI17721.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  846 bits (2185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/693 (62%), Positives = 527/693 (76%), Gaps = 15/693 (2%)

Query: 1   MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYK--AICKENSD 58
           MKFTCL +GG F FPPCHI+ VSGF +L DCPLDLS+L +FSP+P   +    +   +S 
Sbjct: 82  MKFTCLSKGGNFYFPPCHIITVSGFRILLDCPLDLSSLMIFSPIPTHAFSNPELPSPDSV 141

Query: 59  SQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGF 118
            Q RQK E+P+D+++LI A+PW+KTV +LHLWNV FIDVVLISSPMGMLGLPFL+R+ GF
Sbjct: 142 DQKRQKHERPIDSSELIRAQPWFKTVTSLHLWNVPFIDVVLISSPMGMLGLPFLSRVNGF 201

Query: 119 SAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIAL 178
            AKIY+TE  ARIGQL+ME+L+ MN E+RQFYG EES  PQWM WE+LE LPS  R+I L
Sbjct: 202 RAKIYVTEVTARIGQLLMEDLVLMNKEFRQFYGCEESGLPQWMNWEKLESLPSLFREIVL 261

Query: 179 GEDGSELGGGCPCIA--HVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIIS 236
           GEDG ELGG  P  +   VK C+ KV TL++ +E CYNG LIIKA SSGL+IG CNW I+
Sbjct: 262 GEDGVELGGWMPLYSADDVKGCMQKVHTLKYAQEVCYNGTLIIKAVSSGLEIGTCNWTIN 321

Query: 237 GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSS--LDSTED--------IDQS 286
           G K NIA +S S F S HAM+FDY A++G+DLI+YSDLSS  L+  +D          +S
Sbjct: 322 GPKRNIACLSSSIFNSSHAMNFDYHALRGNDLIIYSDLSSPVLEDVKDNSCYSAPTSQKS 381

Query: 287 SFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLL 346
           S    +N+ E     L +  ES+EEMEKL FICSC IDSVKAGGSVLIPI R+G+ LQLL
Sbjct: 382 STLSADNDQEASAELLLSTSESLEEMEKLNFICSCIIDSVKAGGSVLIPIGRLGIILQLL 441

Query: 347 EQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKE 406
           E I++ +E SSLK+PI+IISSVAEELLA+TN IPEWLCKQRQEKLFSG+P FAH +LIKE
Sbjct: 442 ELISLSLEASSLKVPIFIISSVAEELLAFTNIIPEWLCKQRQEKLFSGEPFFAHTQLIKE 501

Query: 407 KKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAE 466
           KK+HVFPAVHSP LL  WQEPCI FSPHWSLRLGP +HLLRRWSGD NSLL++E  VDA+
Sbjct: 502 KKLHVFPAVHSPNLLKIWQEPCIAFSPHWSLRLGPVVHLLRRWSGDENSLLIMEEGVDAD 561

Query: 467 LAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTSFSVS 526
           LA+LPFKP++MKVLQCSFLSG KLQKVQPLLKILQPK VLFPE+ R  VS+SD  S +  
Sbjct: 562 LALLPFKPMAMKVLQCSFLSGIKLQKVQPLLKILQPKFVLFPEDLRQLVSYSDTNSHAFF 621

Query: 527 HYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHQLLPE 586
           +Y ENET+ +PSLK S+ELEIAAD+ S    R L  + + I RLKG   V HGKHQL   
Sbjct: 622 YYCENETLPVPSLKNSSELEIAADLVSLIHCRRLTAESIGIGRLKGDFSVTHGKHQLHSG 681

Query: 587 NEPGGSSQTR-PFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKS 645
           +E   SSQ+R P LHWGS D E LLA L KMGI GSVE+  +D +SE+   V V +P K+
Sbjct: 682 SEQADSSQSRPPLLHWGSLDLERLLAVLEKMGIRGSVEQGNSDTDSENARVVHVYEPNKA 741

Query: 646 MIEVRAAVTVISAADKNLASRIVKAMENILEGI 678
           +IEVR   T+ISA++++L+S I +A++ IL G+
Sbjct: 742 LIEVRENSTIISASNESLSSLIFEAVDGILSGL 774

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255558732\|ref\|XP_002520390.1\| conserved hypothetical protein [Ricinus communis] gi\|223540437\|gb\|EEF42006.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|449457454\|ref\|XP_004146463.1\| PREDICTED: integrator complex subunit 9 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356541557\|ref\|XP_003539241.1\| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 9-like [Glycine max]	Back alignment and taxonomy information

>gi\|297829304\|ref\|XP_002882534.1\| hypothetical protein ARALYDRAFT_896920 [Arabidopsis lyrata subsp. lyrata] gi\|297328374\|gb\|EFH58793.1\| hypothetical protein ARALYDRAFT_896920 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449520481\|ref\|XP_004167262.1\| PREDICTED: integrator complex subunit 9 homolog, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|30680341\|ref\|NP_187409.2\| integrator complex subunit 9 [Arabidopsis thaliana] gi\|332641036\|gb\|AEE74557.1\| integrator complex subunit 9 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|147863921\|emb\|CAN78953.1\| hypothetical protein VITISV_004722 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357456769\|ref\|XP_003598665.1\| Integrator complex subunit [Medicago truncatula] gi\|355487713\|gb\|AES68916.1\| Integrator complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357126424\|ref\|XP_003564887.1\| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 9 homolog [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		678
TAIR\|locus:2079696		699	AT3G07530 "AT3G07530" [Arabido	1.0	0.969	0.493	2e-184
ZFIN\|ZDB-GENE-061013-129		658	ints9 "integrator complex subu	0.289	0.297	0.336	4.5e-49
UNIPROTKB\|Q9NV88		658	INTS9 "Integrator complex subu	0.489	0.504	0.262	8.6e-49
UNIPROTKB\|Q2KJA6		658	INTS9 "Integrator complex subu	0.482	0.496	0.272	1.9e-48
UNIPROTKB\|F6XI08		658	INTS9 "Uncharacterized protein	0.482	0.496	0.275	2.5e-48
UNIPROTKB\|F1MMA6		658	INTS9 "Integrator complex subu	0.482	0.496	0.272	3.3e-48
MGI\|MGI:1098533		658	Ints9 "integrator complex subu	0.486	0.501	0.269	5.5e-48
UNIPROTKB\|Q5ZKK2		658	INTS9 "Integrator complex subu	0.489	0.504	0.270	6.2e-48
RGD\|1311539		659	Ints9 "integrator complex subu	0.489	0.503	0.273	2e-47
UNIPROTKB\|G3XAN1		525	INTS9 "Integrator complex subu	0.283	0.365	0.323	1.4e-46

TAIR\|locus:2079696 AT3G07530 "AT3G07530" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1789 (634.8 bits), Expect = 2.0e-184, P = 2.0e-184
 Identities = 345/699 (49%), Positives = 472/699 (67%)

Query:     1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPN----DFYKAICKEN 56
             M+ TCL +G GF++PPCH+LN+ GF +L DCPLDLSA+ +FSP+P+    +  + +  E+
Sbjct:     1 MELTCLSKGDGFHYPPCHMLNLCGFRILIDCPLDLSAIKIFSPVPSGVGSEASEYLSDES 60

Query:    57 SDSQN----RQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFL 112
              D+QN    +QK+E+ L   DL+  EPWYKTV  LHLW  SFID+VLIS+PMG+LGLPFL
Sbjct:    61 LDAQNPIQKKQKLERQLTCADLVCEEPWYKTVKALHLWEASFIDIVLISNPMGLLGLPFL 120

Query:   113 TRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSA 172
             T+  GF AKIY+TE  A+IGQLMME+++ M+ E+R F+G + SS P W+K  + E +P+ 
Sbjct:   121 TQNPGFFAKIYMTEVTAKIGQLMMEDIVSMHKEFRCFHGPDNSSFPGWIKNLDSEQVPAL 180

Query:   173 LRKIALGEDGSELGGGCPCIA--HVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGA 230
             L+K+  GE G +LG      +   ++ C+ KVQ ++F EE CYNG LIIKA SSGLDIGA
Sbjct:   181 LKKVVFGESGDDLGSWMRLYSLDDIESCMKKVQGVKFAEEVCYNGTLIIKALSSGLDIGA 240

Query:   231 CNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGXXXXXXXXXXXXXXXXXXXQSSFS- 289
             CNW+I+G  G+++Y+S S F S HA  FD+  ++                        S 
Sbjct:   241 CNWLINGPNGSLSYVSDSIFVSHHARSFDFHGLKETDVLIYSDFSSLQSAEVTEDGCISP 300

Query:   290 DDNNNW----EELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQL 345
             D +NN+     +  +SL N ++S+EEMEKLAF+CSCA +S  AGGS LI I R+G+ LQL
Sbjct:   301 DSDNNYISTISDNKDSLLNTEDSLEEMEKLAFVCSCAAESADAGGSTLITITRIGIVLQL 360

Query:   346 LEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIK 405
             LE ++  +E SSLK+PI++ISSVAEELLAYTNTIPEWLC+QRQEKL SG+P F H+K IK
Sbjct:   361 LELLSNSLESSSLKVPIFVISSVAEELLAYTNTIPEWLCEQRQEKLISGEPSFGHLKFIK 420

Query:   406 EKKIHVFPAVHSPKLLM----NWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLEN 461
              KKIH+FPA+HSP L+     +WQEPCIVF+ HWSLRLGP++ LL+RW GD  SLLVLE+
Sbjct:   421 NKKIHLFPAIHSPNLIYANRTSWQEPCIVFASHWSLRLGPSVQLLQRWRGDPKSLLVLED 480

Query:   462 EVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRXXXXXXXXX 521
              + + L +LPF+PI+MK+LQCSFLSG +LQK+  L+ +LQPK+ L P+            
Sbjct:   481 GISSGLGLLPFRPIAMKILQCSFLSGIRLQKLPTLVSVLQPKIFLVPDAVNQRISLAAIK 540

Query:   522 XXXXXXYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKK-LNITRLKGRLFVNHGK 580
                   Y EN+T+H+P + ++  +EI  D+ASK  WR L+Q++   I RLKG L +  GK
Sbjct:   541 TISILNYFENKTLHVPRIVDNPSVEITTDLASKLSWRKLRQRESFGIARLKGGLLMEDGK 600

Query:   581 HQLLPENEPGGSS-QTRPFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKV 639
             H+L+   E   SS + RP  HWGS  PE LL  L KMGI GS+E+   D  SED   + +
Sbjct:   601 HRLVSGLEQEESSGKARPLRHWGSVAPELLLDALLKMGIKGSIEQSTGDNGSEDKSIIHI 660

Query:   640 QDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI 678
             ++P   +IE     T I   D+N+ S++ +A++ +L+GI
Sbjct:   661 ENPNSGLIEFSEMGTAIITGDENVVSQVFQAIDGVLDGI 699

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN\|ZDB-GENE-061013-129 ints9 "integrator complex subunit 9" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NV88 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2KJA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F6XI08 INTS9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MMA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1098533 Ints9 "integrator complex subunit 9" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZKK2 INTS9 "Integrator complex subunit 9" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1311539 Ints9 "integrator complex subunit 9" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|G3XAN1 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		678
smart01027		126	smart01027, Beta-Casp, Beta-Casp domain	1e-15
pfam10996		124	pfam10996, Beta-Casp, Beta-Casp domain	2e-13
COG1236		427	COG1236, YSH1, Predicted exonuclease of the beta-l	6e-07
COG1782		637	COG1782, COG1782, Predicted metal-dependent RNase,	1e-05
TIGR03675		630	TIGR03675, arCOG00543, arCOG00543 universal archae	0.001

>gnl\|CDD\|214983 smart01027, Beta-Casp, Beta-Casp domain	Back alignment and domain information

 Score = 73.3 bits (181), Expect = 1e-15
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 342 FLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD--PLF 398
             +LL  +        L  +PIY+ S +A        + PEW+  + +++   G     F
Sbjct: 1   TQELLLILEELWREGELPNVPIYLDSPMAARATEIYKSYPEWMSDEIRKRFEQGRNPFDF 60

Query: 399 AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLV 458
            ++K +K  +          K L +++ P ++ +    L  G + H L+R + D  + ++
Sbjct: 61  KNLKFVKSLEES--------KRLNDYKGPKVIIASSGMLTGGRSRHYLKRLAPDPRNTVI 112

Query: 459 L 459
           L
Sbjct: 113 L 113

The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains. Length = 126

>gnl\|CDD\|220932 pfam10996, Beta-Casp, Beta-Casp domain	Back alignment and domain information

>gnl\|CDD\|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		678
KOG1138		653	consensus Predicted cleavage and polyadenylation s	100.0
KOG1136		501	consensus Predicted cleavage and polyadenylation s	100.0
KOG1137		668	consensus mRNA cleavage and polyadenylation factor	100.0
KOG1135		764	consensus mRNA cleavage and polyadenylation factor	100.0
COG1782		637	Predicted metal-dependent RNase, consists of a met	100.0
TIGR03675		630	arCOG00543 arCOG00543 universal archaeal KH-domain	100.0
COG1236		427	YSH1 Predicted exonuclease of the beta-lactamase f	100.0
TIGR00649		422	MG423 conserved hypothetical protein. Contains an	100.0
COG0595		555	mRNA degradation ribonucleases J1/J2 (metallo-beta	99.91
PF10996		126	Beta-Casp: Beta-Casp domain; InterPro: IPR022712 T	99.89
PRK11244		250	phnP carbon-phosphorus lyase complex accessory pro	99.56
TIGR02651		299	RNase_Z ribonuclease Z. Processing of the 3-prime	99.46
PRK05184		302	pyrroloquinoline quinone biosynthesis protein PqqB	99.45
PRK02113		252	putative hydrolase; Provisional	99.4
TIGR02649		303	true_RNase_BN ribonuclease BN. Members of this pro	99.4
TIGR03307		238	PhnP phosphonate metabolism protein PhnP. This fam	99.37
PF13299		161	CPSF100_C: Cleavage and polyadenylation factor 2 C	99.35
TIGR02108		302	PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B.	99.27
PRK00685		228	metal-dependent hydrolase; Provisional	99.26
PRK00055		270	ribonuclease Z; Reviewed	99.26
smart00849		183	Lactamase_B Metallo-beta-lactamase superfamily. Ap	99.14
PF12706		194	Lactamase_B_2: Beta-lactamase superfamily domain;	99.11
PRK04286		298	hypothetical protein; Provisional	99.06
COG1234		292	ElaC Metal-dependent hydrolases of the beta-lactam	99.03
KOG1361		481	consensus Predicted hydrolase involved in interstr	98.97
PF07521		43	RMMBL: RNA-metabolising metallo-beta-lactamase; In	98.91
PRK02126		334	ribonuclease Z; Provisional	98.81
PRK11921		394	metallo-beta-lactamase/flavodoxin domain-containin	98.72
PRK05452		479	anaerobic nitric oxide reductase flavorubredoxin;	98.6
PRK11709		355	putative L-ascorbate 6-phosphate lactonase; Provis	98.56
PF00753		194	Lactamase_B: Metallo-beta-lactamase superfamily; I	98.53
TIGR02650		277	RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me	98.33
PF13483		163	Lactamase_B_3: Beta-lactamase superfamily domain;	98.26
COG1237		259	Metal-dependent hydrolases of the beta-lactamase s	98.19
TIGR03413		248	GSH_gloB hydroxyacylglutathione hydrolase. Members	98.17
COG0426		388	FpaA Uncharacterized flavoproteins [Energy product	98.0
COG0491		252	GloB Zn-dependent hydrolases, including glyoxylase	97.97
PLN02469		258	hydroxyacylglutathione hydrolase	97.88
KOG2121		746	consensus Predicted metal-dependent hydrolase (bet	97.86
TIGR00361		662	ComEC_Rec2 DNA internalization-related competence	97.83
PLN02398		329	hydroxyacylglutathione hydrolase	97.65
PRK10241		251	hydroxyacylglutathione hydrolase; Provisional	97.63
PRK11539		755	ComEC family competence protein; Provisional	97.61
COG2220		258	Predicted Zn-dependent hydrolases of the beta-lact	97.47
COG2248		304	Predicted hydrolase (metallo-beta-lactamase superf	97.43
PLN02962		251	hydroxyacylglutathione hydrolase	97.27
COG1235		269	PhnP Metal-dependent hydrolases of the beta-lactam	97.23
COG2333		293	ComEC Predicted hydrolase (metallo-beta-lactamase	97.03
PF07522		110	DRMBL: DNA repair metallo-beta-lactamase; InterPro	96.28
KOG0813		265	consensus Glyoxylase [General function prediction	96.03
PF02112		335	PDEase_II: cAMP phosphodiesterases class-II; Inter	96.01
PF13691		63	Lactamase_B_4: tRNase Z endonuclease	89.72
PF14597		199	Lactamase_B_5: Metallo-beta-lactamase superfamily;	88.17
KOG3592		934	consensus Microtubule-associated proteins [Cytoske	82.28
KOG1137		668	consensus mRNA cleavage and polyadenylation factor	81.03

>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=2.5e-110  Score=870.78  Aligned_cols=624  Identities=31%  Similarity=0.518  Sum_probs=559.5

Q ss_pred             CEEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccc---cccC-cccccccccCCCCccc--cc
Q 005761            1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAI---CKEN-SDSQNRQKVEKPLDAN--DL   74 (678)
Q Consensus         1 mkl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~--~~   74 (678)
                      |++|++...   .+-+|.++++...|||+|||++++++++|+|.|...++++   |++. .++.+...+.++++|+  .+
T Consensus         1 M~~t~~sv~---~t~pc~llk~~~~rIllDcpld~t~~~nFlPlp~~qSpr~~n~p~~~~~~d~~kfq~~elke~~~rvf   77 (653)
T KOG1138|consen    1 MEGTIGSVS---STYPCKLLKLQRRRILLDCPLDLTAILNFLPLPGVQSPRYSNLPSLDAQNDIQKFQDLELKECCGRVF   77 (653)
T ss_pred             CceEEEeec---cCCCchheeccceeEEecCCcchhhhhccccCccccCcccccCccccccCccchhhhHHHHHhCCceE
Confidence            888888754   3789999999999999999999999999999997777754   4443 3344444455555544  57


Q ss_pred             cccCCcccccccccCCCCCCccEEEecCCCCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCC
Q 005761           75 IFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEE  154 (678)
Q Consensus        75 ~~~~p~~~~~~~~~~~d~~~ID~IlISH~dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~  154 (678)
                      .++.|++..|. .+.+|+++||+|||||+.++.||||+|+++||.|+|||||||+|+||+||||++.+.++     .|+.
T Consensus        78 vesppe~~l~~-t~lld~stiDvILISNy~~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier-----~p~~  151 (653)
T KOG1138|consen   78 VESPPEFTLPA-THLLDASTIDVILISNYMGMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIER-----FPKA  151 (653)
T ss_pred             EcCCchhccch-hhhhcccceeEEEEcchhhhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHh-----cccc
Confidence            78888887775 58899999999999999999999999999999999999999999999999999999875     4899


Q ss_pred             CCCcccchhhhhhhchhhhhhhcccCCCCCCCCCCchH--HHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcccEE
Q 005761          155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACN  232 (678)
Q Consensus       155 ~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lGs~~  232 (678)
                      ++++.|++..+.+.+|+++++.      ....+|+++|  +||+.|++|++.++|+|++++.|.+.+||.+|||.+|||+
T Consensus       152 ~S~~~Wk~k~~~~~lpsplk~~------~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsn  225 (653)
T KOG1138|consen  152 SSAPLWKKKLDSELLPSPLKKA------VFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSN  225 (653)
T ss_pred             ccchhhhhhhhhhhcCCCchhh------ccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccc
Confidence            9999999998888899988764      2367899999  9999999999999999999999999999999999999999


Q ss_pred             EEEeeCCeeEEEecCCCCCcCCCCcccccccCCCCeEeecCCCCCCCCCCcccCcccCCCcchhhhhccCCCCcccHHHH
Q 005761          233 WIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEM  312 (678)
Q Consensus       233 ~~I~~~~~~I~Y~sgD~~~~~h~~~~d~~~l~~~d~li~~~~~~~p~~~Dv~EsTyg~~~~~~~~~~~~~h~~~~~~~e~  312 (678)
                      |.|+.+++++.|+||+++.++|+++||++.|+.+|+||.++|+++|           +.+++                  
T Consensus       226 W~I~t~nek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~lsql~-----------tanpd------------------  276 (653)
T KOG1138|consen  226 WLINTPNEKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTGLSQLP-----------TANPD------------------  276 (653)
T ss_pred             eEEecCCcceEEEecCcccccCCccccccccccccEEEEecccccc-----------cCCcc------------------
Confidence            9999999999999999999999999999999999999999998887           12222                  


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEChhHHHHHHHHHhcHHHHhHHHHHHH
Q 005761          313 EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL  391 (678)
Q Consensus       313 e~l~~~~~~I~~tl~~GG~VLIP~~a~Gr~qELl~~L~~~~~~~~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~  391 (678)
                      ++..+||..|..|+++||+||+||+++|.++||+++|.+..++.++ ++|||++||+|+.++++.++++|||+.++|+++
T Consensus       277 ~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~~P~yfISpvadSsla~s~ilaEwls~akqnkv  356 (653)
T KOG1138|consen  277 EMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSDTPIYFISPVADSSLATSDILAEWLSLAKQNKV  356 (653)
T ss_pred             chhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcCCcceEecccchhhhhHHHHHHHHHHhhhccce
Confidence            2567899999999999999999999999999999999999999998 899999999999999999999999999999999


Q ss_pred             hCCCCCCCceEEeeccccccccccCChhhhccCCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcEEEc-cCcchhcccC
Q 005761          392 FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLE-NEVDAELAVL  470 (678)
Q Consensus       392 ~~~~~pF~~~~~~~~~~l~~~~~i~~~~~~~~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~Iilt-~gy~~~~tl~  470 (678)
                      |.|+.||+|..+++++|+++|.++.+. +.+.++.|||||++|++|++|+++|+++-|+.+|+|++|+| +++.+...++
T Consensus       357 ylpe~p~~hs~lI~~~rlkiy~sl~g~-fSndfrqpcvvf~~H~SlRfgdv~h~~e~~g~sp~NsvI~tdpD~~~~~vl~  435 (653)
T KOG1138|consen  357 YLPEAPFPHSTLITINRLKIYLSLLGL-FSNDFRQPCVVFMGHPSLRFGDVVHFLECWGLSPKNSVIFTDPDFSYLLVLA  435 (653)
T ss_pred             eccCCCCCCceEEeecceeehHHHHHH-HhhhcccceeEecCCcchhhhHHHHHHHHhcCCCCCceEEeCCCCchhhhhc
Confidence            999999999999999999999999985 88999999999999999999999999999999999999985 5699999999


Q ss_pred             CCCceeeEEEEeecccCCCHhhHHHHHHhhCCCEEEEecCCccccccccc------CCceEeecCCCcEEEeCCCCceee
Q 005761          471 PFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDV------TSFSVSHYSENETIHIPSLKESAE  544 (678)
Q Consensus       471 ~~~~v~~~v~~~~fs~had~~~l~~li~~~~P~~vilvHg~~~~~~~l~~------~~~~v~~p~~ge~v~i~~~~~~~~  544 (678)
                      ||+|+.||+.+|||+.+.|++++.++++.+||+.|+++..+.+++.....      .-+++.+...+|.+++|.+++.++
T Consensus       436 PfrpLamK~i~cpidtrlnfqql~kLlkelqPk~vlcpeaytqp~~~ap~~~i~~~d~~pi~t~~c~ei~~lp~Krkl~~  515 (653)
T KOG1138|consen  436 PFRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVLCPEAYTQPIPLAPIKTISILDYFPIKTLHCPEIVDLPNKRKLVS  515 (653)
T ss_pred             CCccccceeEeccccccccHHHHHHHHHHhCCCEEEChhhhcCCCCccchheehhccccccceeehhHHhcCccccceeE
Confidence            99999999999999999999999999999999999999999988766642      235677888999999999999999


Q ss_pred             EEecHHHHhhhhhhhhhcCC-cceeEEEEEEEEeCCeeeeecCCCCCC----CCCCC------CceEecCCChHHHHHHH
Q 005761          545 LEIAADIASKFQWRMLKQKK-LNITRLKGRLFVNHGKHQLLPENEPGG----SSQTR------PFLHWGSPDPENLLAEL  613 (678)
Q Consensus       545 v~l~~~l~~~l~~~~~~~~~-~~~a~v~g~l~~~d~~~~l~~~~~~~~----~~~~~------~~~~~g~~~~~~~~~~L  613 (678)
                      |.+++|+|++|.|++++ ++ +.+|+++|+|.++|++|.|+|......    ++...      .++..|++.++++++.|
T Consensus       516 veItpela~kLs~ke~~-~~~~~iAtl~~~L~~~d~kh~Lvp~~~~~k~ek~s~~~~p~lk~lk~~~a~ei~vda~~k~~  594 (653)
T KOG1138|consen  516 VEITPELASKLSPKELR-QGEFGIATLKGVLLMKDGKHRLVPAKVSLKQEKSSSKARPVLKVLKNSVAGEILVDALLKML  594 (653)
T ss_pred             EEEcHHHHhhCChhhcc-CceeEEEEEEEEEEEecCceeeeecccchhhhhcccccchHHhhhhhccCcccchHHHHHHH
Confidence            99999999999999997 55 999999999999999999999655422    11111      24788999999999999


Q ss_pred             HHCCCceeEeeccccCcCCCceEEEEeCCCCcEEEEecceeEEEcC-CHHHHHHHHHHHHHhhc
Q 005761          614 SKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAA-DKNLASRIVKAMENILE  676 (678)
Q Consensus       614 ~~~g~~~~~~~~~~~~~~~~~~~i~i~~~~~~~I~~~~~~t~I~~~-~~~~r~~l~d~~~~~l~  676 (678)
                      .|.||.......     +..+.+|...+ ++++|+++++.|||+|+ +..+|..++|+...+++
T Consensus       595 ik~~~s~itvdn-----~g~g~~i~~~e-~enlikf~Em~t~Ii~~dd~~v~~~~~di~~~llq  652 (653)
T KOG1138|consen  595 IKGGFSQITVDN-----TGEGKSIILIE-NENLIKFEEMGTHIICGDDNVVRQVLRDIDGKLLQ  652 (653)
T ss_pred             hhcchhheeeec-----CCCceEEEecc-CchhhhhhhccceEEECCCchhhhhhHhhhhhhcc
Confidence            999999887642     34567777766 67799999999999999 99999999999998875

>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]	Back alignment and domain information

>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein	Back alignment and domain information

>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00649 MG423 conserved hypothetical protein	Back alignment and domain information

>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	Back alignment and domain information

>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease	Back alignment and domain information

>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional	Back alignment and domain information

>TIGR02651 RNase_Z ribonuclease Z	Back alignment and domain information

>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional	Back alignment and domain information

>PRK02113 putative hydrolase; Provisional	Back alignment and domain information

>TIGR02649 true_RNase_BN ribonuclease BN	Back alignment and domain information

>TIGR03307 PhnP phosphonate metabolism protein PhnP	Back alignment and domain information

>PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal	Back alignment and domain information

>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B	Back alignment and domain information

>PRK00685 metal-dependent hydrolase; Provisional	Back alignment and domain information

>PRK00055 ribonuclease Z; Reviewed	Back alignment and domain information

>smart00849 Lactamase_B Metallo-beta-lactamase superfamily	Back alignment and domain information

>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A	Back alignment and domain information

>PRK04286 hypothetical protein; Provisional	Back alignment and domain information

>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]	Back alignment and domain information

>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]	Back alignment and domain information

>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs	Back alignment and domain information

>PRK02126 ribonuclease Z; Provisional	Back alignment and domain information

>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional	Back alignment and domain information

>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional	Back alignment and domain information

>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional	Back alignment and domain information

>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []	Back alignment and domain information

>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type	Back alignment and domain information

>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A	Back alignment and domain information

>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	Back alignment and domain information

>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase	Back alignment and domain information

>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]	Back alignment and domain information

>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]	Back alignment and domain information

>PLN02469 hydroxyacylglutathione hydrolase	Back alignment and domain information

>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2	Back alignment and domain information

>PLN02398 hydroxyacylglutathione hydrolase	Back alignment and domain information

>PRK10241 hydroxyacylglutathione hydrolase; Provisional	Back alignment and domain information

>PRK11539 ComEC family competence protein; Provisional	Back alignment and domain information

>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	Back alignment and domain information

>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	Back alignment and domain information

>PLN02962 hydroxyacylglutathione hydrolase	Back alignment and domain information

>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]	Back alignment and domain information

>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	Back alignment and domain information

>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs	Back alignment and domain information

>KOG0813 consensus Glyoxylase [General function prediction only]	Back alignment and domain information

>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3	Back alignment and domain information

>PF13691 Lactamase_B_4: tRNase Z endonuclease	Back alignment and domain information

>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B	Back alignment and domain information

>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]	Back alignment and domain information

>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		678
3af5_A		651	The Crystal Structure Of An Archaeal Cpsf Subunit,		9e-05

>pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Length = 651

Back alignment and structure

Iteration: 1

Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 310 EEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVA 369 EE EK + +++K GG VLIP VG +++ + + +++PIY+ + Sbjct: 406 EEAEKR--LIEVIHNTIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLDGMIW 463 Query: 370 EELLAYTNTIPEWLCKQRQEKLFSG--DPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEP 427 E +T PE+L ++ +E++F +P + + H + +++ EP Sbjct: 464 EATAIHT-AYPEYLSRRLREQIFKEGYNPFLSEI-------FHPVANSRERQDIIDSNEP 515 Query: 428 CIVFSPHWSLRLGPTIHLLRRWSGD-HNSLLVLENEVDAELA 468 I+ + L GP++ ++ + D NS++ + + + L Sbjct: 516 AIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLG 557

PyMOL of 3af5

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		678
2i7x_A		717	Protein CFT2; polyadenylation, metallo-B-lactamase	2e-28
2i7t_A		459	Cleavage and polyadenylation specificity factor 73	4e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3af5_A		651	Putative uncharacterized protein PH1404; archaeal	9e-08
2xr1_A		640	Cleavage and polyadenylation specificity factor 1	3e-07
3iek_A		431	Ribonuclease TTHA0252; metallo beta lactamase fold	5e-07
2ycb_A		636	Beta-CAsp RNAse, cleavage and polyadenylation spec	1e-05

>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717	Back alignment and structure

 Score =  120 bits (302), Expect = 2e-28
 Identities = 58/477 (12%), Positives = 128/477 (26%), Gaps = 129/477 (27%)

Query: 1   MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQ 60
           M +   C   G       ++      +L D   + S ++    +                
Sbjct: 1   MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEK----------- 49

Query: 61  NRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP----MGMLGLPFLTRME 116
                                          +  IDV+++S P    +G   L +     
Sbjct: 50  ------------------------------VIPEIDVIILSQPTIECLGAHSLLYYNFTS 79

Query: 117 --GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALR 174
                 ++Y T     +G++   +                S+G                 
Sbjct: 80  HFISRIQVYATLPVINLGRVSTIDSY-------------ASAGVIGPYDTNKL------- 119

Query: 175 KIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI---LIIKAFSSGLDIGAC 231
                            +  ++     +  L++ +          L + A+++G+  G  
Sbjct: 120 ----------------DLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGS 163

Query: 232 NWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDD 291
            W IS     + Y    N             +  + ++        D+T     +     
Sbjct: 164 IWCISTYSEKLVYAKRWNHT-------RDNILNAASIL--------DATGKPLSTLMRPS 208

Query: 292 NNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351
                 ++ +L  +  S    ++           + + GSV+IP++  G FL L  Q+  
Sbjct: 209 A-----IITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHE 263

Query: 352 FMECSS-----LKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD----PLFAHVK 402
            +  S+      ++P+ I+S      L Y  ++ EWL     +   + +           
Sbjct: 264 LLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIGSRI 323

Query: 403 LIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL 459
            I            +P  L  +    I F             ++ +      + L+L
Sbjct: 324 KI-----------IAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTLIL 366

PyMOL of 2i7x

>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651	Back alignment and structure

>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640	Back alignment and structure

>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431	Back alignment and structure

>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		678
3iek_A		431	Ribonuclease TTHA0252; metallo beta lactamase fold	100.0
2i7t_A		459	Cleavage and polyadenylation specificity factor 73	100.0
3af5_A		651	Putative uncharacterized protein PH1404; archaeal	100.0
2xr1_A		640	Cleavage and polyadenylation specificity factor 1	100.0
2ycb_A		636	Beta-CAsp RNAse, cleavage and polyadenylation spec	100.0
2i7x_A		717	Protein CFT2; polyadenylation, metallo-B-lactamase	100.0
3zq4_A		555	Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat	100.0
3bk2_A		562	RNAse J, metal dependent hydrolase; endoribonuclea	100.0
2az4_A		429	Hypothetical protein EF2904; structural genomics,	100.0
4b87_A		367	DNA cross-LINK repair 1A protein; dclre1A, DCLRE,	99.93
3zdk_A		336	5' exonuclease apollo; hydrolase; HET: TLA; 2.16A	99.9
1y44_A		320	Ribonuclease Z; zinc-dependent metal hydrolase, hy	99.62
2cbn_A		306	Ribonuclease Z; phosphodiesterase beta lactamase t	99.6
1zkp_A		268	Hypothetical protein BA1088; zinc binding protein,	99.57
3g1p_A		258	Protein PHNP; C-P lyase, phosphodiesterase, phosph	99.56
3zwf_A		368	Zinc phosphodiesterase ELAC protein 1; beta-lactam	99.52
3md7_A		293	Beta-lactamase-like; ssgcid, hydrolase, structural	99.44
3jxp_A		321	Coenzyme PQQ synthesis protein B; alpha-beta prote	99.4
2e7y_A		280	TRNAse Z; tRNA maturation, metallo-beta-lactaMSe,	99.4
3kl7_A		235	Putative metal-dependent hydrolase; structural gen	99.37
2r2d_A		276	AGR_PTI_140P, Zn-dependent hydrolases; lactonase,	99.24
1ztc_A		221	Hypothetical protein TM0894; structural genomics,	99.17
3m8t_A		294	'BLR6230 protein; subclass B3 beta-lactamase, zinc	99.13
3dha_A		254	N-acyl homoserine lactone hydrolase; zinc bimetall	99.13
3rpc_A		264	Possible metal-dependent hydrolase; structural gen	99.1
2wyl_A		360	L-ascorbate-6-phosphate lactonase ULAG; hydrolase;	99.09
2xf4_A		210	Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A	99.07
3esh_A		280	Protein similar to metal-dependent hydrolase; stru	99.07
1k07_A		263	FEZ-1 beta-lactamase; monomer with alpha-beta/BETA	99.07
3bv6_A		379	Metal-dependent hydrolase; metallo protein, beta-l	99.04
3adr_A		261	Putative uncharacterized protein ST1585; quorum se	99.01
2zwr_A		207	Metallo-beta-lactamase superfamily protein; hydrol	99.01
3aj3_A		274	MLR6805 protein, 4-pyridoxolactonase; Zn-protein,	99.0
3l6n_A		219	Metallo-beta-lactamase; zinc, hydolase, antibiotic	98.99
1p9e_A		331	Methyl parathion hydrolase; Zn containing; 2.40A {	98.87
1sml_A		269	Protein (penicillinase); metallo-beta-lactamase, a	98.83
4efz_A		298	Metallo-beta-lactamase family protein; structural	98.82
4ax1_B		303	Metallo-beta-lactamase AIM-1; hydrolase, antibioti	98.82
2vw8_A		303	PA1000, PQSE; quinolone signal response protein, s	98.8
1e5d_A		402	Rubredoxin\:oxygen oxidoreductase; oxygenreductase	98.8
1m2x_A		223	Class B carbapenemase BLAB-1; alpha-beta/BETA-alph	98.8
2fhx_A		246	SPM-1; metallo-beta-lactamase, dinuclear zinc, ant	98.78
3iog_A		227	Beta-lactamase; hydrolase, antibiotic resistance,	98.76
2zo4_A		317	Metallo-beta-lactamase family protein; hydrolase;	98.75
1vjn_A		220	Zn-dependent hydrolase of metallo-beta-lactamase s	98.75
4hl2_A		243	Beta-lactamase NDM-1; structural genomics, PSI-bio	98.72
2gcu_A		245	Putative hydroxyacylglutathione hydrolase 3; ethyl	98.72
2p18_A		311	Glyoxalase II; metalloprotein, beta sandwich, alph	98.71
3q6v_A		233	Beta-lactamase; metalloenzyme, alpha-beta, hydrola	98.7
2bib_A		547	CBPE, teichoic acid phosphorylcholine esterase/ ch	98.68
1mqo_A		227	Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd	98.68
2ohh_A		404	Type A flavoprotein FPRA; beta-lactamase like doma	98.68
1a7t_A		232	Metallo-beta-lactamase; hydrolase (beta-lactamase)	98.67
3tp9_A		474	Beta-lactamase and rhodanese domain protein; struc	98.67
1ycg_A		398	Nitric oxide reductase; DIIRON site, oxidoreductas	98.66
2qed_A		258	Hydroxyacylglutathione hydrolase; metallo-B- super	98.64
3hnn_A		262	Putative diflavin flavoprotein A 5; PSI-2, protein	98.62
4dik_A		410	Flavoprotein; TM0755, electron transport, DI-iron	98.61
2q9u_A		414	A-type flavoprotein; flavodoxin like, beta lactama	98.55
2p97_A		201	Hypothetical protein; putative metal-dependent hyd	98.54
1qh5_A		260	Glyoxalase II, protein (hydroxyacylglutathione hyd	98.54
4ad9_A		289	Lactb2, beta-lactamase-like protein 2; hydrolase,	98.52
1xm8_A		254	Glyoxalase II; structural genomics, protein struct	98.5
3r2u_A		466	Metallo-beta-lactamase family protein; structural	98.46
2y8b_A		265	Metallo-B-lactamase; hydrolase, cephalosporins, an	98.39
1jjt_A		228	IMP-1 metallo beta-lactamase; metallo-beta-lactama	98.38
2p4z_A		284	Metal-dependent hydrolases of the beta-lactamase s	97.96
4eyb_A		270	Beta-lactamase NDM-1; metallo beta lactamase, anti	97.8
2cfu_A		658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	97.65
2yhe_A		668	SEC-alkyl sulfatase; hydrolase, inversion, metallo	96.21
3h3e_A		267	Uncharacterized protein TM1679; structural genomic	96.6

>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*	Back alignment and structure

Probab=100.00  E-value=5.1e-71  Score=610.95  Aligned_cols=405  Identities=19%  Similarity=0.228  Sum_probs=339.8

Q ss_pred             CEEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCc
Q 005761            1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW   80 (678)
Q Consensus         1 mkl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   80 (678)
                      |||++||++ +++|+|||+|+.++.+||+|||+....           .               ...         ..+ 
T Consensus         1 M~i~~LG~~-~~vg~s~~li~~~~~~iLID~G~~~~~-----------~---------------~~~---------~~~-   43 (431)
T 3iek_A            1 MRIVPFGAA-REVTGSAHLLLAGGRRVLLDCGMFQGK-----------E---------------EAR---------NHA-   43 (431)
T ss_dssp             CEEEECSCS-SSSSCCCEEEEETTEEEEECCCCCCGG-----------G---------------GGG---------GGS-
T ss_pred             CEEEEeCCC-CCCCCcEEEEEECCeEEEEeCCCCcch-----------h---------------hcc---------chh-
Confidence            999999998 899999999999999999999995221           0               000         001 


Q ss_pred             ccccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCc
Q 005761           81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP  158 (678)
Q Consensus        81 ~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~  158 (678)
                            ...+++.+||+|||||+  ||+|+||+|.+ .+|++|||||++|+++.+.++.|+.++++              
T Consensus        44 ------~~~~~~~~Id~VllTH~H~DH~gglp~l~~-~~~~~~Iy~t~~t~~l~~~~l~d~~~~~~--------------  102 (431)
T 3iek_A           44 ------PFGFDPKEVDAVLLTHAHLDHVGRLPKLFR-EGYRGPVYATRATVLLMEIVLEDALKVMD--------------  102 (431)
T ss_dssp             ------CCSSCGGGCCEEECSCCCHHHHTTHHHHHH-TTCCSCEEECHHHHHHHHHHHHHHHHHCS--------------
T ss_pred             ------hcCCCcccCCEEEECCCChHHhccHHHHHH-cCCCCeEEEcHHHHHHHHHHHHHHHhhcc--------------
Confidence                  12346789999999999  99999999998 68899999999999999999988764421              


Q ss_pred             ccchhhhhhhchhhhhhhcccCCCCCCCCCCchH--HHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcccEEEEEe
Q 005761          159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIIS  236 (678)
Q Consensus       159 ~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lGs~~~~I~  236 (678)
                                                    .++|  +|++.++.+++.++|++++++ |+++++++++||++||++|.|+
T Consensus       103 ------------------------------~~~y~~~~~~~~~~~~~~l~~~~~~~l-~g~~v~~~~agH~~Gs~~~~i~  151 (431)
T 3iek_A          103 ------------------------------EPFFGPEDVEEALGHLRPLEYGEWLRL-GALSLAFGQAGHLPGSAFVVAQ  151 (431)
T ss_dssp             ------------------------------SCSSCHHHHHHHHHTEEECCTTCCEEE-TTEEEEEEECCSSTTCEEEEEE
T ss_pred             ------------------------------cCCCCHHHHHHHHhccEEcCCCCeEEe-CCEEEEEEeCCCCcCceEEEEE
Confidence                                          1456  899999999999999999999 7899999999999999999999


Q ss_pred             eCCeeEEEecCCCCCcCCCCcccccccCCCCeEeecCCCCCCCCCCcccCcccCCCcchhhhhccCCCCcccHHHHHHHH
Q 005761          237 GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLA  316 (678)
Q Consensus       237 ~~~~~I~Y~sgD~~~~~h~~~~d~~~l~~~d~li~~~~~~~p~~~Dv~EsTyg~~~~~~~~~~~~~h~~~~~~~e~e~l~  316 (678)
                      .++++|+| |||+.....+.-.+.....++|+||             +||||++          +.|+++.     ++.+
T Consensus       152 ~~~~~ilf-sGD~~~~~~~~l~~~~~~~~~D~LI-------------~EsTy~~----------~~h~~~~-----~~~~  202 (431)
T 3iek_A          152 GEGRTLVY-SGDLGNREKDVLPDPSLPPLADLVL-------------AEGTYGD----------RPHRPYR-----ETVR  202 (431)
T ss_dssp             ETTEEEEE-CCCCCCTTSSSSCCCCBCCCCSEEE-------------EECTTTT----------CCCCCHH-----HHHH
T ss_pred             ECCEEEEE-eCCCCCCCCcccCCccccCCccEEE-------------EEcccCC----------cCCCChH-----HHHH
Confidence            99999999 9999432211100111233444443             7889988          3454432     2346


Q ss_pred             HHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEChhHHHHHHHHHhcHHHHhHHHHHHHhCCC
Q 005761          317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD  395 (678)
Q Consensus       317 ~~~~~I~~tl~~GG~VLIP~~a~Gr~qELl~~L~~~~~~~~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~  395 (678)
                      +|++.|.+++++||+||||+|++||+|||+.+|+++|++  + ++|||++||||.+++++|+.++|||++..++.+..++
T Consensus       203 ~l~~~i~~~~~~gg~vlIp~fa~gR~qell~~l~~~~~~--~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (431)
T 3iek_A          203 EFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHR--LPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGK  280 (431)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCTTTHHHHHHHHHHHHGGG--SCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCCeEEEEeccchHHHHHHHHHHHHHHh--ccCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence            688999999999999999999999999999999999988  6 7999999999999999999999999999999888888


Q ss_pred             CCC--CceEEeeccccccccccCChhhhccCCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcEEEccCcchhcccC---
Q 005761          396 PLF--AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVL---  470 (678)
Q Consensus       396 ~pF--~~~~~~~~~~l~~~~~i~~~~~~~~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~Iilt~gy~~~~tl~---  470 (678)
                      +||  ++++++++        .++++.++..++||||||++|||++|+++++|++|++||+|+||| +|||+++|++   
T Consensus       281 ~pf~~~~~~~~~~--------~~~~~~~~~~~~p~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~-~gyq~~gt~g~~l  351 (431)
T 3iek_A          281 NPFRPAGLEVVEH--------TEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVF-VGYQPQGGLGAEI  351 (431)
T ss_dssp             CTTCCTTEEECCS--------HHHHHHHHHSCSSEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEE-CSCCCTTSHHHHH
T ss_pred             CCCCCCCeEEeCC--------HHHHHHHhcCCCCeEEEecCCCCCCChHHHHHHHhcCCCCCeEEE-ECCCCCCChHHHh
Confidence            998  67777665        444445566799999999999999999999999999999999999 8999999973   


Q ss_pred             -----------CCCceeeEEEEe-ecccCCCHhhHHHHHHhhCCCEEEEecCCccccccccc----CCceEeecCCCcEE
Q 005761          471 -----------PFKPISMKVLQC-SFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDV----TSFSVSHYSENETI  534 (678)
Q Consensus       471 -----------~~~~v~~~v~~~-~fs~had~~~l~~li~~~~P~~vilvHg~~~~~~~l~~----~~~~v~~p~~ge~v  534 (678)
                                 ...+++|+|+++ +||||||+++|++|++.++  +|+|||||++.+..|++    .+.++++|.+||++
T Consensus       352 ~~~~~~v~~~g~~~~v~a~v~~~~~~saHad~~~l~~~~~~~~--~v~lvHge~~~~~~l~~~l~~~~~~~~~p~~~~~~  429 (431)
T 3iek_A          352 IARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEP--RVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGV  429 (431)
T ss_dssp             HTCCSEEEETTEEEECCSEEEECGGGCSSCCHHHHHHHHTTCS--EEEEESSCHHHHHHHHHHHHHTTCEEEECCTTCCE
T ss_pred             hcCCcEEEECCEEEEEEEEEEEECCccccCCHHHHHHHHHhCC--eEEEECCCHHHHHHHHHHHHHhCCcEEECCCCCEE
Confidence                       235799999999 6999999999999999775  99999999999999973    45699999999998


Q ss_pred             Ee
Q 005761          535 HI  536 (678)
Q Consensus       535 ~i  536 (678)
                      ++
T Consensus       430 ~~  431 (431)
T 3iek_A          430 PV  431 (431)
T ss_dssp             EC
T ss_pred             eC
Confidence            75

PyMOL of 3iek

>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A	Back alignment and structure

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*	Back alignment and structure

>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}	Back alignment and structure

>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}	Back alignment and structure

>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10	Back alignment and structure

>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}	Back alignment and structure

>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*	Back alignment and structure

>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10	Back alignment and structure

>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}	Back alignment and structure

>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}	Back alignment and structure

>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*	Back alignment and structure

>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7	Back alignment and structure

>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9	Back alignment and structure

>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A	Back alignment and structure

>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}	Back alignment and structure

>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*	Back alignment and structure

>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A	Back alignment and structure

>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A	Back alignment and structure

>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}	Back alignment and structure

>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}	Back alignment and structure

>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11	Back alignment and structure

>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A	Back alignment and structure

>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A	Back alignment and structure

>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}	Back alignment and structure

>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*	Back alignment and structure

>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}	Back alignment and structure

>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}	Back alignment and structure

>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A	Back alignment and structure

>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}	Back alignment and structure

>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}	Back alignment and structure

>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A	Back alignment and structure

>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A	Back alignment and structure

>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0	Back alignment and structure

>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5	Back alignment and structure

>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A	Back alignment and structure

>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}	Back alignment and structure

>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B	Back alignment and structure

>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*	Back alignment and structure

>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3	Back alignment and structure

>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1	Back alignment and structure

>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}	Back alignment and structure

>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A	Back alignment and structure

>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}	Back alignment and structure

>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4	Back alignment and structure

>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A	Back alignment and structure

>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}	Back alignment and structure

>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*	Back alignment and structure

>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A	Back alignment and structure

>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*	Back alignment and structure

>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...	Back alignment and structure

>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*	Back alignment and structure

>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*	Back alignment and structure

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*	Back alignment and structure

>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2	Back alignment and structure

>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*	Back alignment and structure

>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}	Back alignment and structure

>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12	Back alignment and structure

>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*	Back alignment and structure

>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}	Back alignment and structure

>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A	Back alignment and structure

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}	Back alignment and structure

>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A	Back alignment and structure

>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A	Back alignment and structure

>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}	Back alignment and structure

>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A	Back alignment and structure

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*	Back alignment and structure

>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}	Back alignment and structure

>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		678
d2i7xa1		514	d.157.1.10 (A:1-422,A:626-717) Cleavage factor two	1e-25
d2dkfa1		431	d.157.1.10 (A:1-431) Putative RNA-degradation prot	7e-08
d2i7ta1		451	d.157.1.10 (A:9-459) Cleavage and polyadenylation	4e-06

>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (271), Expect = 1e-25
 Identities = 53/475 (11%), Positives = 125/475 (26%), Gaps = 125/475 (26%)

Query: 1   MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQ 60
           M +   C   G       ++      +L D   + S ++    +                
Sbjct: 1   MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEK----------- 49

Query: 61  NRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP----MGMLGLPFLTRME 116
                                          +  IDV+++S P    +G      L    
Sbjct: 50  ------------------------------VIPEIDVIILSQPTIECLG--AHSLLYYNF 77

Query: 117 ----GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSA 172
                   ++Y T     +G++   +          +   +                   
Sbjct: 78  TSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLD----------------- 120

Query: 173 LRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI---LIIKAFSSGLDIG 229
                              +  ++     +  L++ +          L + A+++G+  G
Sbjct: 121 -------------------LEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPG 161

Query: 230 ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFS 289
              W IS     + Y       +          +  + ++  +                 
Sbjct: 162 GSIWCISTYSEKLVY-------AKRWNHTRDNILNAASILDATGKPLSTLMRPSA----- 209

Query: 290 DDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQI 349
                   ++ +L  +  S    ++           + + GSV+IP++  G FL L  Q+
Sbjct: 210 --------IITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQV 261

Query: 350 AIFMECSSL-----KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLI 404
              +  S+      ++P+ I+S      L Y  ++ EWL     +   + +         
Sbjct: 262 HELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPF---- 317

Query: 405 KEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL 459
              +I     + +P  L  +    I F             ++ +      + L+L
Sbjct: 318 ---EIGSRIKIIAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTLIL 366

PyMOL of d2i7xa1

>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431	Back information, alignment and structure

>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		678
d2i7xa1		514	Cleavage factor two protein 2, CFT2 {Baker's yeast	100.0
d2dkfa1		431	Putative RNA-degradation protein TTHA0252 {Thermus	100.0
d2i7ta1		451	Cleavage and polyadenylation specificity factor su	100.0
d1zkpa1		244	Hypothetical protein BA1088 (BAS1016) {Bacillus an	99.64
d2az4a1		183	Hypothetical protein EF2904 {Enterococcus faecalis	99.42
d2cbna1		305	Ribonuclease Z (RNase Z) {Escherichia coli [TaxId:	99.34
d1y44a1		307	Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId	99.3
d1p9ea_		294	Methyl parathion hydrolase {Pseudomonas sp. WBC-3	99.14
d1k07a_		262	Zn metallo-beta-lactamase {Fluoribacter gormanii,	98.93
d1xtoa_		304	Coenzyme PQQ synthesis protein B, PqqB {Pseudomona	98.92
d2aioa1		266	Zn metallo-beta-lactamase {Xanthomonas maltophilia	98.87
d1ztca1		207	Hypothetical protein TM0894 {Thermotoga maritima [	98.83
d2e7ya1		280	Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax	98.77
d2gmna1		264	Zn metallo-beta-lactamase {Bradyrhizobium japonicu	98.75
d2q0ia1		298	Quinolone signal response protein PqsE {Pseudomona	98.71
d1wraa1		305	Teichoic acid phosphorylcholine esterase Pce (LytD	98.56
d1x8ha_		228	Zn metallo-beta-lactamase {Aeromonas hydrophila, C	98.51
d1e5da2		249	Rubredoxin oxygen:oxidoreductase (ROO), N-terminal	98.27
d1ycga2		249	Nitric oxide reductase N-terminal domain {Moorella	98.26
d1vjna_		209	Hypothetical protein TM0207 {Thermotoga maritima [	98.19
d1ko3a_		230	Zn metallo-beta-lactamase {Pseudomonas aeruginosa,	98.07
d1vmea2		250	ROO-like flavoprotein TM0755, N-terminal domain {T	97.93
d1m2xa_		219	Zn metallo-beta-lactamase {Chryseobacterium mening	97.78
d1mqoa_		221	Zn metallo-beta-lactamase {Bacillus cereus [TaxId:	97.74
d1jjta_		220	Zn metallo-beta-lactamase {Pseudomonas aeruginosa,	97.53
d1znba_		230	Zn metallo-beta-lactamase {Bacteroides fragilis [T	97.4
d1qh5a_		260	Glyoxalase II (hydroxyacylglutathione hydrolase) {	97.35
d2p97a1		200	Hypothetical protein Ava3068 {Anabaena variabilis	97.19
d1xm8a_		254	Glyoxalase II (hydroxyacylglutathione hydrolase) {	97.01
d2qeda1		251	Glyoxalase II (hydroxyacylglutathione hydrolase) {	96.65
d2cfua2		505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	96.29

>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-68  Score=600.19  Aligned_cols=417  Identities=14%  Similarity=0.172  Sum_probs=330.1

Q ss_pred             EEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCcc
Q 005761            2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY   81 (678)
Q Consensus         2 kl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   81 (678)
                      +++|+|.|  .-+.+|+||+++|.+||||||++...        .+..                           +.+.+
T Consensus         4 ~~~~~~~g--~g~~sc~ll~~~~~~iLlDcG~~~~~--------~~~~---------------------------~~~~~   46 (514)
T d2i7xa1           4 KYNCCDDG--SGTTVGSVVRFDNVTLLIDPGWNPSK--------VSYE---------------------------QCIKY   46 (514)
T ss_dssp             EEEECCSS--SSSCCCEEEEETTEEEEECCCCCTTT--------SCHH---------------------------HHHHH
T ss_pred             EEEEecCC--CceeeEEEEEECCeEEEEECCCCcCc--------cchh---------------------------hhhhh
Confidence            57788754  23789999999999999999998331        0000                           01111


Q ss_pred             cccccccCCCCCCccEEEecCC--CCCChhhhhccc----cCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCC
Q 005761           82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRM----EGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEES  155 (678)
Q Consensus        82 ~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~----~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~  155 (678)
                            ...++++||+|||||+  ||+||||||++.    .+|++|||||+||+++++++|.|+++.++..         
T Consensus        47 ------~~~~~~~IdaillTH~H~DHiGalP~L~~~~~~~~~~~~pIy~T~~T~~l~~~~l~d~~~~~~~~---------  111 (514)
T d2i7xa1          47 ------WEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVI---------  111 (514)
T ss_dssp             ------HHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHHHHHHHHHHHHHHHHHTTSS---------
T ss_pred             ------hhcCcccCCEEEECCCChHHHCchHHHHHhcccccCCCcCEEeCHHHHHHHHHHHHHHHHHhhhh---------
Confidence                  1235778999999999  999999999863    3679999999999999999999998764310         


Q ss_pred             CCcccchhhhhhhchhhhhhhcccCCCCCCCCCCchH--HHHHHHHhcceEecCCCeEEeCC---CeEEEEEecCCCccc
Q 005761          156 SGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNG---ILIIKAFSSGLDIGA  230 (678)
Q Consensus       156 ~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~y~e~v~i~g---~l~it~~~sGH~lGs  230 (678)
                                                .   ....++|  +||+.+++++++++|+|++++.+   ++++++++|||++||
T Consensus       112 --------------------------~---~~~~~~~~~~dv~~~~~~~~~~~y~e~~~i~~~~~~~~~~~~~aGHilGs  162 (514)
T d2i7xa1         112 --------------------------G---PYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGG  162 (514)
T ss_dssp             --------------------------S---SBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSSTTC
T ss_pred             --------------------------c---ccccCCCCHHHHHHHHHhcccCCCCCeEEecCCcccEEEEEccCCCCCCc
Confidence                                      0   0013667  99999999999999999999953   699999999999999


Q ss_pred             EEEEEeeCCeeEEEecCCCCC--cCCCCcccccccCCCCeEeecCC-CCCCCCCCc-ccCcccCCCcchhhhhccCCCCc
Q 005761          231 CNWIISGAKGNIAYISGSNFA--SGHAMDFDYRAIQGSDLILYSDL-SSLDSTEDI-DQSSFSDDNNNWEELMNSLSNYD  306 (678)
Q Consensus       231 ~~~~I~~~~~~I~Y~sgD~~~--~~h~~~~d~~~l~~~d~li~~~~-~~~p~~~Dv-~EsTyg~~~~~~~~~~~~~h~~~  306 (678)
                      |+|.|+.++.+|+| |||+..  ++|        +.+++..-.... .......++ +|+||+.          ..|.++
T Consensus       163 a~~~I~~~~~~Ivy-tGD~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~lli~~t~~~----------~~~~~~  223 (514)
T d2i7xa1         163 SIWCISTYSEKLVY-AKRWNHTRDNI--------LNAASILDATGKPLSTLMRPSAIITTLDRF----------GSSQPF  223 (514)
T ss_dssp             EEEEEECSSCEEEE-CSSCCSSCCSS--------CCCCTTBCTTSCBCSTTSSCSEEEECCSCC----------CCSSCH
T ss_pred             eEEEEEECCeEEEE-EeccCCCCCcc--------CCCccccccccccccccCCCEEEEEcCCCC----------CCCCCh
Confidence            99999999999999 999842  222        333321100000 001112233 8889877          333333


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCC----C-ceeEEEEChhHHHHHHHHHhcHH
Q 005761          307 ESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS----L-KIPIYIISSVAEELLAYTNTIPE  381 (678)
Q Consensus       307 ~~~~e~e~l~~~~~~I~~tl~~GG~VLIP~~a~Gr~qELl~~L~~~~~~~~----l-~~pIy~~s~~a~~~~~~~~~~~e  381 (678)
                      .     ++.+.|++.|.+++++||+||||+|++||+|||+.+|+++|++..    + ++|||++|++|.+++++|+++.|
T Consensus       224 ~-----~~~~~l~~~i~~~~~~gG~VlIP~fa~gR~QEil~~l~~~~~~~~~~~~~~~~pI~~~~~~~~~~~~~~~~~~e  298 (514)
T d2i7xa1         224 K-----KRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLE  298 (514)
T ss_dssp             H-----HHHHHHHHHHHHHTSTTCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGG
T ss_pred             H-----HHHHHHHHHHHHHHhCCCEEEEEEcCchHHHHHHHHHHHHHHHHHhhccCCCceEEEEChHHHHHHHHHHHhHh
Confidence            2     233668999999999999999999999999999999999998652    3 68999999999999999999999


Q ss_pred             HHhHHHHHHHhC--CCCCC--CceEEeeccccccccccCChhhhccCCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcE
Q 005761          382 WLCKQRQEKLFS--GDPLF--AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLL  457 (678)
Q Consensus       382 wl~~~~~~~~~~--~~~pF--~~~~~~~~~~l~~~~~i~~~~~~~~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~I  457 (678)
                      ||++..++.+..  +.+||  ++++.+++           .+.+...++|||||||++|   |+++++|++|++||+|+|
T Consensus       299 ~~~~~~~~~~~~~~~~~pf~~~~~~~i~~-----------~~~l~~~~~p~VIiat~~~---G~~~~~l~~~a~d~~n~V  364 (514)
T d2i7xa1         299 WLSPSLLKTWENRNNTSPFEIGSRIKIIA-----------PNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTL  364 (514)
T ss_dssp             GSCHHHHHHHHSSSSCCTTCCTTTEEECC-----------GGGGGGCCSCEEEEEESCH---HHHHHHHHHHSSCTTEEE
T ss_pred             hcCHHHHHHHhhhcCCCchhccCceeccC-----------HHHHHhccCCcEEEEcCCC---chHHHHHHHHhcCCCCEE
Confidence            999999887753  56777  66666654           2345677999999999987   999999999999999999


Q ss_pred             EEc-cCcchhcccCC-----------------------------------------------------------------
Q 005761          458 VLE-NEVDAELAVLP-----------------------------------------------------------------  471 (678)
Q Consensus       458 ilt-~gy~~~~tl~~-----------------------------------------------------------------  471 (678)
                      ||| +||+.++|++.                                                                 
T Consensus       365 i~t~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (514)
T d2i7xa1         365 ILTKPSFECASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETNFDNLDYLKIDKTLSKRTISTV  444 (514)
T ss_dssp             EECSSCCTTCHHHHHHHHHHHTCC--------CCCCEECCEEEEEEEEEEEESCSCCCCCSCCGGGSCSSCCEEEEEEEE
T ss_pred             EEecCCCcccccHHHHHhhhhhhccccccccccccccccCcceeecccccccccccccCcccccccccccccceeecccc
Confidence            995 69987755410                                                                 


Q ss_pred             CCceeeEEEEeecccCCCHhhHHHHHHhhCCCEEEEecCCcccccccc----cCCceEeecCCCcEEEeC
Q 005761          472 FKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD----VTSFSVSHYSENETIHIP  537 (678)
Q Consensus       472 ~~~v~~~v~~~~fs~had~~~l~~li~~~~P~~vilvHg~~~~~~~l~----~~~~~v~~p~~ge~v~i~  537 (678)
                      ..+++|+|..+.||+|+|.++|.++++.++|++||+|||+...+++++    +.|++|++|++||+|++.
T Consensus       445 ~~~v~~~v~~i~~SgHad~~el~~~~~~~~P~~vvlvHGe~~~~~~~a~~l~~~g~~v~~p~~g~~ie~~  514 (514)
T d2i7xa1         445 NVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMPLNKIVEFS  514 (514)
T ss_dssp             EEEECSEEEECCCCCSCCHHHHHHHGGGSCCSEEEECSCGGGSCHHHHHHHHHTTCEEEECCSSCCEEEC
T ss_pred             eEEEEEEEEEEEeeecCCHHHHHHHHHhhCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEecCCCCEEeeC
Confidence            125799999999999999999999999999999999999999998886    469999999999999874

PyMOL of d2i7xa1

>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]}	Back information, alignment and structure

>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}	Back information, alignment and structure

>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]}	Back information, alignment and structure

>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]}	Back information, alignment and structure

>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]}	Back information, alignment and structure

>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]}	Back information, alignment and structure

>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]}	Back information, alignment and structure

>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}	Back information, alignment and structure

>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]}	Back information, alignment and structure

>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]}	Back information, alignment and structure

>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}	Back information, alignment and structure

>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure