Citrus Sinensis ID: 005765

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68

MAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAGSLASPSPNIEETGVTNGGGHDQVTVGEDDLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCTTEKPPTWVEWRERPDSSNPSSADEPVSIPNGELQDQGGNGDVDVPEPSPSSSNTEDANITTTGELSKSIDENPSSKPSEPSESGSPSEPAESGTPSEPAESGTPSEPAESGTPSEPSESVDGNHPSSDPAATEVVKTVAKAEGTPEVTKDDKDVVNEAEN

ccHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHcHHccccccccHHHHHcccccHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccHHHHccccc

MAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDkfsssdspevhANAAETLCSItrsappalaakisspnFIGRLFRHalensrpksvLVNSLSICIslldpkrltlgTYYMFNrqlthgstvtvnpetveGMLGRLGDLLKLLDVSSEESSLLTtygklqpplgkhrLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFfeypynnflhhHVENIILSClecknaplIEHLLHECNLVGKILEAeknftlkdsnkptvpaegrlpprignighLTRISNKLIQLGNNNSEIHAYLQensewndwQINVLSKRNTLENIYQwacgrptalhdrgrdsddddyqnrdYDVAALANNLSQAfrygiysnddvdeaqgslerddedvyfddesAEVVISSLrlgddqesgslftnsnwfafeddrvsheraagslaspspnieetgvtnggghdqvtvgeddlddtatsaavpvsksedsdvgklpndsvetgscttekpptwvewrerpdssnpssadepvsipngelqdqggngdvdvpepspsssntedanitttgelsksidenpsskpsepsesgspsepaesgtpsepaesgtpsepaesgtpsepsesvdgnhpssdpaaTEVVKTVAkaegtpevtkddkDVVNEAEN

MAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRqlthgstvtvnPETVEGMLGRLGDLLKLLDVSSEESSLLTtygklqpplgkhrLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKnftlkdsnkptvpaegrlpprigNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSlerddedvyfdDESAEVVISSlrlgddqesgsLFTNSNWFAFEDDRVSHERaagslaspspnieetgvtngGGHDQVTVGEDDLDDTATSaavpvsksedsdvgklpndsvetgscttekpptwvewrerpDSSNPSSADEPVSIPNGELQDQGGNGDVDVPEPspsssntedanITTTgelsksidenpsskpsepsesgspsepaESGTPSEPAESGTPSEPAESGTPSEPSESVDGNHPSSDPAATEVVKTVakaegtpevtkddkdvvneaen

MAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMlgrlgdllklldvsseessllTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHdrgrdsddddyqnrdydVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAGSLASPSPNIEETGVTNGGGHDQVTVGEDDLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCTTEKPPTWVEWRERPDSSNPSSADEPVSIPNGELQDQGGNGDVDVpepspsssNTEDANITTTGELSKSIDenpsskpsepsesgspsepaesgtpsepaesGTPSEPAESGTPSEPSESVDGNHPSSDPaatevvktvakaeGTPEVTKDDKDVVNEAEN

*****IMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKF**************TLCSIT*****ALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTL****************RIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTAL**************RDYDVAALANNLSQAFRYGIYSN*****************YF*****EVVISSL**********LFTNSNWFAF*******************************************************************************************************************************************************************************************************************************************

***QEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRL*********************PETVEGMLGRLGDLLKLLDV***********GKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNF*******************IGNIGHLTRISNKLIQLGNNNSE**AYLQENSEWNDWQINVLSKRNTLENIYQWACG**************************LANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERA*********************************************************************************************************************************************************************************************************************************

MAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKF*********ANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAGSLASPSPNIEETGVTNGGGHDQVTVGEDDL***********************************KPPTWVE*****************SIPNGELQD*****************************************************************************************************TVAKAEGTPEVTKDDKDVVNEAEN

**HQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDV***QGSLERDDEDVYFDDESAEVVISSLRLGD*QESGSLFTNSNWF*********************************************************************************************************************************************************************************************************************************************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		678	2.2.26 [Sep-21-2011]
Q922D4		844	Serine/threonine-protein	yes	no	0.520	0.418	0.274	6e-34
Q5F471		873	Serine/threonine-protein	yes	no	0.523	0.406	0.279	2e-33
Q5H9R7		873	Serine/threonine-protein	yes	no	0.522	0.405	0.264	1e-32
Q9UPN7		881	Serine/threonine-protein	no	no	0.522	0.401	0.252	8e-30
O75170		966	Serine/threonine-protein	no	no	0.432	0.303	0.271	2e-29
Q6NRF1		850	Serine/threonine-protein	N/A	no	0.476	0.38	0.263	4e-28
Q8R3Q2		923	Serine/threonine-protein	no	no	0.433	0.318	0.263	6e-28
Q6NRI0		852	Serine/threonine-protein	N/A	no	0.476	0.379	0.263	8e-28
Q7TSI3		856	Serine/threonine-protein	no	no	0.523	0.414	0.253	1e-26
O74511		838	Extragenic suppressor of	yes	no	0.150	0.121	0.278	9e-05

>sp\|Q922D4\|PP6R3_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Mus musculus GN=Ppp6r3 PE=1 SV=1	Back alignment and function desciption

 Score =  146 bits (368), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 199/411 (48%), Gaps = 58/411 (14%)

Query: 10  LVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANA 69
           ++  IG ++IM++L+RL+   E       + + W+ +  +++ +V+    S   + H+NA
Sbjct: 153 IIKHIGTSAIMDLLLRLLTCIEPPQPR-QDVLNWLNEERIIQRLVEIVHPSQEEDRHSNA 211

Query: 70  AETLCSITR------------SAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSI 117
           +++LC I R            + P  L A +     I +L  +     + +S +V+++ I
Sbjct: 212 SQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQI 271

Query: 118 CISLLDPKRLTL-GTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLL 176
            ++LL+ +R T  G   +    ++H S  +VN   +E + GRLG   +LL    ++S + 
Sbjct: 272 LLTLLETRRPTFEGHIEICPPGMSH-SACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMK 330

Query: 177 TTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHH 236
           TT+G L PP+G  RL ++  IS LL   + +   +L+   ++  ILD+FF+Y +NNFLH 
Sbjct: 331 TTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHT 390

Query: 237 HVENIILSCLEC--KNAP--------------LIEHLLHECNLVGKILEAEKNFTLKDSN 280
            VE  I   L    +NA               L++HL  +C L+ +ILEA       D+N
Sbjct: 391 QVEICIALILASPFENAENGTITDQDSTGDNLLLKHLFQKCQLIERILEA------WDTN 444

Query: 281 KPTVPAEGRLPPRIGNIGHLTRISNKLIQ---LGNNNSEIHAYLQE-----NSEWNDWQI 332
           +      GR   R G +GHLTRI+N ++     G N++ +   +++        W  +  
Sbjct: 445 EKKQAEGGR---RHGYMGHLTRIANCIVHSTDKGPNSALVQQLIKDLPDEVRERWETFCT 501

Query: 333 NVL---SKRNTLE---NIYQWACGRPTALHDRG----RDSDDDDYQNRDYD 373
           N L   +KRNT++   + YQ        +   G    + +D DD  N  +D
Sbjct: 502 NSLGETNKRNTVDLAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFD 552

Regulatory subunit of protein phosphatase 6 (PP6). May function as a scaffolding PP6 subunit. May have an important role in maintaining immune self-tolerance.
Mus musculus (taxid: 10090)

>sp\|Q5F471\|PP6R3_CHICK Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Gallus gallus GN=PPP6R3 PE=2 SV=1	Back alignment and function description

>sp\|Q5H9R7\|PP6R3_HUMAN Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens GN=PPP6R3 PE=1 SV=2	Back alignment and function description

>sp\|Q9UPN7\|PP6R1_HUMAN Serine/threonine-protein phosphatase 6 regulatory subunit 1 OS=Homo sapiens GN=PPP6R1 PE=1 SV=5	Back alignment and function description

>sp\|O75170\|PP6R2_HUMAN Serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Homo sapiens GN=PPP6R2 PE=1 SV=2	Back alignment and function description

>sp\|Q6NRF1\|P6R3B_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-B OS=Xenopus laevis GN=ppp6r3-b PE=2 SV=1	Back alignment and function description

>sp\|Q8R3Q2\|PP6R2_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Mus musculus GN=Ppp6r2 PE=1 SV=1	Back alignment and function description

>sp\|Q6NRI0\|P6R3A_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-A OS=Xenopus laevis GN=ppp6r3-a PE=2 SV=1	Back alignment and function description

>sp\|Q7TSI3\|PP6R1_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 1 OS=Mus musculus GN=Ppp6r1 PE=1 SV=1	Back alignment and function description

>sp\|O74511\|EKC1_SCHPO Extragenic suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ekc1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		678
359483671		786	PREDICTED: serine/threonine-protein phos	0.883	0.762	0.756	0.0
297740815		785	unnamed protein product [Vitis vinifera]	0.882	0.761	0.756	0.0
255564407		783	conserved hypothetical protein [Ricinus	0.904	0.782	0.742	0.0
356532415		881	PREDICTED: serine/threonine-protein phos	0.786	0.604	0.721	0.0
449433551		769	PREDICTED: serine/threonine-protein phos	0.883	0.778	0.685	0.0
356558055		838	PREDICTED: serine/threonine-protein phos	0.883	0.714	0.658	0.0
357448461		794	Serine/threonine protein phosphatase 6 r	0.859	0.734	0.672	0.0
449490607		772	PREDICTED: LOW QUALITY PROTEIN: serine/t	0.883	0.775	0.677	0.0
334182957		805	SIT4 phosphatase-associated-like protein	0.908	0.765	0.642	0.0
334182955		764	SIT4 phosphatase-associated-like protein	0.908	0.806	0.640	0.0

>gi\|359483671\|ref\|XP_002281685.2\| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/604 (75%), Positives = 514/604 (85%), Gaps = 5/604 (0%)

Query: 2   AHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSD 61
            HQEI  ++VDLIGITSIMEVLIRLIGADEHM+TN  E+MQW++ T+VLEMIVDKFSSSD
Sbjct: 142 VHQEIFRQMVDLIGITSIMEVLIRLIGADEHMFTNNMEAMQWLDSTDVLEMIVDKFSSSD 201

Query: 62  SPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISL 121
            PEVHANAAETLCSITR APP LA+KISSP+FIGRLFRHALE+SRPKSVLVNSLS+CISL
Sbjct: 202 CPEVHANAAETLCSITRYAPPGLASKISSPSFIGRLFRHALEDSRPKSVLVNSLSVCISL 261

Query: 122 LDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGK 181
           LDPKRLTLGTY+M+NRQLTHGST+T NPETVEGML  LGDLLKLLDVSSEES LLTTYGK
Sbjct: 262 LDPKRLTLGTYHMYNRQLTHGSTITANPETVEGMLESLGDLLKLLDVSSEESLLLTTYGK 321

Query: 182 LQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENI 241
           LQPPLGKHRLKIVEFISVL T+GSEAAEKELIR GA+++ILDLFF+YPYNNF+HHHVENI
Sbjct: 322 LQPPLGKHRLKIVEFISVLPTIGSEAAEKELIRLGAIQQILDLFFKYPYNNFMHHHVENI 381

Query: 242 ILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDS-NKPTVPAEGRLPPRIGNIGHL 300
           I+SCLE KN PLIEHLL ECNLVGKILEAEKN+TL D  NKPTVPAEGR PPRIGNIGHL
Sbjct: 382 IVSCLESKNRPLIEHLLRECNLVGKILEAEKNYTLSDDLNKPTVPAEGRTPPRIGNIGHL 441

Query: 301 TRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGR 360
           TRISNKL+QLG++N+EI AYL+ENSEW D+   VL KRN +EN+YQWACGRPTAL DR R
Sbjct: 442 TRISNKLVQLGSSNTEIEAYLKENSEWVDFHGTVLLKRNAVENVYQWACGRPTALQDRTR 501

Query: 361 DSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVI 420
           DSDDDDYQ+RDYDVAALANNLSQAFRYGIYSNDD+DE  G LERDDEDVYFDDESAEVVI
Sbjct: 502 DSDDDDYQDRDYDVAALANNLSQAFRYGIYSNDDMDETHGQLERDDEDVYFDDESAEVVI 561

Query: 421 SSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAGSLASPSPNIEETGVTNGGGHDQVTV 480
           SSLRLGDDQES SLFTNSNWFAFEDDR+++ER+ GSLASPSPN  ETG+TN GG+D+V V
Sbjct: 562 SSLRLGDDQESSSLFTNSNWFAFEDDRIANERSTGSLASPSPNT-ETGLTNSGGNDEVIV 620

Query: 481 GEDD-LDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCTTEKPPTWVEWRERPDSSNPSS 539
           GEDD LDDTATS+ +P  K  +S      +D  E G   ++KPP WVEWRE  DSSNPS 
Sbjct: 621 GEDDELDDTATSSPLPEVKPHESTQNNPSDDLKEIGPDESDKPPEWVEWRETSDSSNPSD 680

Query: 540 ADEPVSIPNGELQDQGGNGDV--DVPEPSPSSSNTEDANITTTGELSKSIDENPSSKPSE 597
            D+P+ +PNGELQ    + ++  D  EPSPS  +    N    G L +S++ +PSS   +
Sbjct: 681 VDKPLVLPNGELQSGHESNEIVPDTTEPSPSVIDELVNNGNAAGALPESMEADPSSNLPK 740

Query: 598 PSES 601
            SES
Sbjct: 741 LSES 744

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297740815\|emb\|CBI30997.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255564407\|ref\|XP_002523200.1\| conserved hypothetical protein [Ricinus communis] gi\|223537607\|gb\|EEF39231.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356532415\|ref\|XP_003534768.1\| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449433551\|ref\|XP_004134561.1\| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356558055\|ref\|XP_003547324.1\| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|357448461\|ref\|XP_003594506.1\| Serine/threonine protein phosphatase 6 regulatory subunit [Medicago truncatula] gi\|355483554\|gb\|AES64757.1\| Serine/threonine protein phosphatase 6 regulatory subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449490607\|ref\|XP_004158654.1\| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|334182957\|ref\|NP_001185116.1\| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana] gi\|332193104\|gb\|AEE31225.1\| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334182955\|ref\|NP_001185115.1\| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana] gi\|332193103\|gb\|AEE31224.1\| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		678
TAIR\|locus:2028185		811	AT1G30470 "AT1G30470" [Arabido	0.812	0.679	0.655	2.2e-192
TAIR\|locus:2205185		802	AT1G07990 "AT1G07990" [Arabido	0.774	0.654	0.519	2.4e-140
TAIR\|locus:2057507		788	AT2G28360 "AT2G28360" [Arabido	0.753	0.648	0.504	2.7e-132
UNIPROTKB\|A7Z051		873	SAPS3 "SAPS3 protein" [Bos tau	0.424	0.329	0.277	2.6e-25
UNIPROTKB\|Q5F471		873	PPP6R3 "Serine/threonine-prote	0.446	0.347	0.279	1.4e-24
UNIPROTKB\|E2R1Z7		873	PPP6R3 "Uncharacterized protei	0.424	0.329	0.265	1.7e-23
MGI\|MGI:1921807		844	Ppp6r3 "protein phosphatase 6,	0.470	0.377	0.258	3.6e-23
UNIPROTKB\|F1RMN3		880	PPP6R1 "Uncharacterized protei	0.182	0.140	0.368	1.1e-22
UNIPROTKB\|O75170		966	PPP6R2 "Serine/threonine-prote	0.339	0.238	0.260	2.4e-22
UNIPROTKB\|Q5H9R7		873	PPP6R3 "Serine/threonine-prote	0.424	0.329	0.268	6.4e-22

TAIR\|locus:2028185 AT1G30470 "AT1G30470" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1864 (661.2 bits), Expect = 2.2e-192, P = 2.2e-192
 Identities = 371/566 (65%), Positives = 436/566 (77%)

Query:     3 HQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDS 62
             HQEI+ +LVDLIGITSIMEVL RL+G DEH+Y+N+T +MQWIEDT+VLEMIVDKF SS+S
Sbjct:   147 HQEILKQLVDLIGITSIMEVLKRLVGTDEHLYSNYTSAMQWIEDTDVLEMIVDKFGSSES 206

Query:    63 PEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLL 122
             PEVHANAAE LC++ R APP LA K+SSP+  GRL +H LE+SRPKSVLVNSLS+CISLL
Sbjct:   207 PEVHANAAEILCTVARYAPPGLATKLSSPSCTGRLLKHTLEDSRPKSVLVNSLSVCISLL 266

Query:   123 DPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMXXXXXXXXXXXXXXXXXXXXXTTYGKL 182
             DPKR TLGTY+++ RQLTHGS VT NPETVEGM                     TTYGKL
Sbjct:   267 DPKRFTLGTYHIYGRQLTHGSMVT-NPETVEGMLGSLGDLLMLLNVSSAEGVLLTTYGKL 325

Query:   183 QPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENII 242
             QPPLGKHRLKIVEFISVLLTVGSEAAEKE+IR GAV+R+LDLFFEYPYNNFLHHHVEN+I
Sbjct:   326 QPPLGKHRLKIVEFISVLLTVGSEAAEKEVIRLGAVKRVLDLFFEYPYNNFLHHHVENVI 385

Query:   243 LSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLK--DSNK--PTVPAEGRLPPRIGNIG 298
             LSC+E KN+ L++HLL ECNL+G ILEAEK+ TL   DS+K  PTVPAEG+ P RIGNIG
Sbjct:   386 LSCMESKNSQLVDHLLSECNLIGSILEAEKDSTLTAGDSDKLQPTVPAEGKKPLRIGNIG 445

Query:   299 HLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHXX 358
             HLTRISNKL+QL N+N EI ++LQENS+W DWQ +VLSKRNTLEN+Y WACGRPT+LH  
Sbjct:   446 HLTRISNKLLQLANSNVEIQSHLQENSKWVDWQTDVLSKRNTLENVYSWACGRPTSLHDR 505

Query:   359 XXXXXXXXXXXXXXXVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEV 418
                            VAALANNLSQAFRYGIYSNDD+DEAQGS+ERDDEDVYFDDESAEV
Sbjct:   506 SRDSDDDDYHDRDYDVAALANNLSQAFRYGIYSNDDMDEAQGSMERDDEDVYFDDESAEV 565

Query:   419 VISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAGSLASPSPNIEETGVTNGGGHDQV 478
             VISSLRLGDDQES SLFTNSNWFAF+DD+ ++ER+  S ASPSPN +  G  +G   D V
Sbjct:   566 VISSLRLGDDQESDSLFTNSNWFAFDDDKAANERSMTSAASPSPNAD--G--DGEDDDDV 621

Query:   479 TVGE-DDLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCTTEKPPTWVEWRERPDSSNP 537
              +GE D+ + TA S+  PV    +    K P+++        EK P WVEWRE  +S+ P
Sbjct:   622 VIGEADEFNATAASSP-PVDMETEDSTSKHPSENPSEPE--PEKSPAWVEWRETSESTAP 678

Query:   538 SSA--DEPVSIPNGELQDQGGNGDVD 561
              S+  +E   + NG++Q +  + D D
Sbjct:   679 PSSNPEETTILSNGDVQIEKEDNDDD 704

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR\|locus:2205185 AT1G07990 "AT1G07990" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2057507 AT2G28360 "AT2G28360" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|A7Z051 SAPS3 "SAPS3 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5F471 PPP6R3 "Serine/threonine-protein phosphatase 6 regulatory subunit 3" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R1Z7 PPP6R3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1921807 Ppp6r3 "protein phosphatase 6, regulatory subunit 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RMN3 PPP6R1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|O75170 PPP6R2 "Serine/threonine-protein phosphatase 6 regulatory subunit 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5H9R7 PPP6R3 "Serine/threonine-protein phosphatase 6 regulatory subunit 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		678
pfam04499		380	pfam04499, SAPS, SIT4 phosphatase-associated prote	8e-77
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-08
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-06
pfam04652		315	pfam04652, DUF605, Vta1 like	2e-05
TIGR02927		579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.001
PRK13108		460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.003
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.004
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004

>gnl\|CDD\|218113 pfam04499, SAPS, SIT4 phosphatase-associated protein	Back alignment and domain information

 Score =  250 bits (641), Expect = 8e-77
 Identities = 99/376 (26%), Positives = 173/376 (46%), Gaps = 48/376 (12%)

Query: 3   HQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDS 62
            +  + + +  I   +IM++L++LI  ++      T  ++W+ +  ++  ++D  S    
Sbjct: 19  QENFVDKFLKHIDTPAIMDLLLKLISTEK--PELPTGIIEWLNEQKLIPKLIDLLSPEYD 76

Query: 63  PEVHANAAETLCSITR------------SAPPALAAKISSPNFIGRLFRHALENSRPKSV 110
            +V +NAA+ L +I                P  L  ++ S   + +L  + L+     S 
Sbjct: 77  SDVQSNAADFLKAIITISANQPLQLQSCIGPNELTRELVSEESVEKLLDNMLDEEGNGSA 136

Query: 111 LVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG----RLGDLLKLL 166
           LVN + I I L+  K  +     ++    +H  +   +P  +  +L      L D  +LL
Sbjct: 137 LVNGVGILIELIR-KNNSDYDEILYTTIESHPPS-ERDPIYLGSLLRLFSPHLPDFHQLL 194

Query: 167 DVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLL-------TVGSEAAEKELIRHGAVR 219
               ++  L TTYG L  PLG  R KIVE I+ LL           +  + EL+    + 
Sbjct: 195 LNPPKKPLLTTTYGVLIEPLGFERFKIVELIAELLHCSNMGLLNVGDYLKIELVDLKIIP 254

Query: 220 RILDLFFEYPYNNFLHHHVENIILSCL-----ECKNAPLIEHLLHECNLVGKILEAEKNF 274
            ILDLFF+YP+NNFLH+ VE+I+   L        N+ L+  L  +CNL  +ILE +   
Sbjct: 255 TILDLFFKYPWNNFLHNVVEDIVQQILNGPMDSGYNSFLVVDLFTDCNLTQRILEGQ--- 311

Query: 275 TLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSE------IHAYLQENSEWN 328
             K+S++    A+G   PR+G +GHLT I+ ++++             I   ++ N EW 
Sbjct: 312 --KESDE--FQAKGG--PRLGYMGHLTLIAEEVVKFSEKYPPELISPLIKEAVE-NEEWE 364

Query: 329 DWQINVLSKRNTLENI 344
           ++    L +     N+
Sbjct: 365 EYVEETLEETRERYNV 380

This family includes a conserved region from a group of yeast proteins that associate with the SIT4 phosphatase. This association is required for SIT4's role in G1 cyclin transcription and for bud formation. This family also includes homologous regions from other eukaryotes. Length = 380

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	Back alignment and domain information

>gnl\|CDD\|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		678
KOG2073		838	consensus SAP family cell cycle dependent phosphat	100.0
PF04499		475	SAPS: SIT4 phosphatase-associated protein; InterPr	100.0
KOG2073		838	consensus SAP family cell cycle dependent phosphat	98.5
KOG3546		1167	consensus Collagens (type XV) [Extracellular struc	96.02
KOG3546		1167	consensus Collagens (type XV) [Extracellular struc	95.97
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	93.73
PF05804		708	KAP: Kinesin-associated protein (KAP)	86.13
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	85.96
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	85.29
KOG1924		1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	81.28
PF12238		205	MSA-2c: Merozoite surface antigen 2c; InterPro: IP	81.21

>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=1e-82  Score=730.58  Aligned_cols=586  Identities=31%  Similarity=0.465  Sum_probs=466.3

Q ss_pred             CcchHHHHHHHHhcCcchHHHHHHHHhccCCCCCcChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHcc-
Q 005765            1 MAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS-   79 (678)
Q Consensus         1 r~~p~iVd~LLKHI~tsaImDlLLRLIt~de~~~~~~~~il~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr~-   79 (678)
                      |+|++||++||+||++++|||||+|||+||++.|+ +++|++||+++++|+||+++|+|++++++|+||+++||+|+|+ 
T Consensus       144 k~~~~~v~~~l~hi~~stlMD~Llkli~~de~~~p-~~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s  222 (838)
T KOG2073|consen  144 KKKDNFVDLFLKHIDISTLMDFLLKLISTDEPESP-RTDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLS  222 (838)
T ss_pred             HhhhHHHHHHHHHcCccHHHHHHHHhccccCCCCc-hHHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcc
Confidence            57899999999999999999999999999999986 4999999999999999999999999999999999999999999 


Q ss_pred             ----CChhHHhhcCCHHHHHHHHHHHhcCCCCccchhhhhhhhhhccCccCCCCCc---chhcccccccCCcccCChhhH
Q 005765           80 ----APPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGT---YYMFNRQLTHGSTVTVNPETV  152 (678)
Q Consensus        80 ----sPn~Ll~~L~S~e~IeqLl~~mL~~~~~~S~LVngIsVlI~LLe~~r~~~s~---y~~~~~~~~~~~~~~v~p~~L  152 (678)
                          +|++|+++|+|+++|+|||++||+++++.|++|++|+|||+++.++|.....   +..+.....+ ....+...+|
T Consensus       223 ~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~-~d~~~~~~~l  301 (838)
T KOG2073|consen  223 RNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSE-RDPIVLNELL  301 (838)
T ss_pred             cccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCccc-cCccchHHHH
Confidence                6999999999999999999999999999999999999999999999987543   3444433222 2234578899


Q ss_pred             HHHHHhHHHHHHhhcCCCcccccccccccccCCccchhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCc
Q 005765          153 EGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNN  232 (678)
Q Consensus       153 ~ail~~L~df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNN  232 (678)
                      ++|.+||++|++||.+++....|+||||.++||||++||||||||++||||+++++.+++...+++.+++|+||+|+|||
T Consensus       302 ~~~~p~L~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN  381 (838)
T KOG2073|consen  302 GAMEPRLGDFVQLLLEPEKLDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNN  381 (838)
T ss_pred             HHHHHHHHHHHHHhcCCccchhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhc---------CCChHHHHHHhhhccHHHHHHHhhhccccc--CCCCCCCCCCCCCCCCCchHHHHH
Q 005765          233 FLHHHVENIILSCLE---------CKNAPLIEHLLHECNLVGKILEAEKNFTLK--DSNKPTVPAEGRLPPRIGNIGHLT  301 (678)
Q Consensus       233 fLH~~Ve~iI~~ILe---------s~n~~Li~hLF~dc~Li~rILea~k~~~~~--~~nk~t~~~egk~~~R~GYMGHLT  301 (678)
                      |||++|+.||..|+.         +.+..++.|+|++|+|+.+|+++|+.+...  +..+++..+.|++..|.|||||+|
T Consensus       382 ~lh~~~e~~I~~~~~~~~~~~~~~s~~~~~v~~~l~~c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~~~g~~~h~~  461 (838)
T KOG2073|consen  382 FLHAQVESCIVENLSDETNNDSNISADNEIVDHLLQDCQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEYRNGPIGHLT  461 (838)
T ss_pred             HHHHHHHHHHHHhhhccccccccCCCchHHHHHHHHHhhhhhhhhhcccccchhccccccchhhhhcCCcccCCccceee
Confidence            999999999999998         788999999999999999999999876544  223456667776556999999999


Q ss_pred             HHH-HHHHHhcC---CcHHHHHHHh--ccccHHHHHHHHhh------hhhhhcccccccCC-CCCcCCCCCCCCCccccc
Q 005765          302 RIS-NKLIQLGN---NNSEIHAYLQ--ENSEWNDWQINVLS------KRNTLENIYQWACG-RPTALHDRGRDSDDDDYQ  368 (678)
Q Consensus       302 ~IA-N~Lv~~~~---~~~~I~~~L~--~n~~W~~Fv~~~L~------e~N~venv~~w~cG-rp~~~~~~~~dsDddD~~  368 (678)
                      ||| |.++++..   ....|+++|+  .+..|..|...++.      ++|+++++|.|.|| ++.+++++-+..|++++.
T Consensus       462 R~~pn~~vq~~~~~~~~~~i~~~L~~f~~~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~~~~~~id~~~~~~e~~~~  541 (838)
T KOG2073|consen  462 RIAPNVGDQLKIKLEDTNIISTLLEGFPEEPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGYLTSNFIDLTRFNDEEEKA  541 (838)
T ss_pred             ecCcchhhhccccccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCccchhhhhhhhhccHHHHhhhccccchhhc
Confidence            999 99999643   6678899998  46788888777765      99999999999999 599999999999998889


Q ss_pred             CCcccHHHHHhhhHHH-HHhhcccCCchhhhccCcCCCCCccccCCCccceeeec---ccccCCcCCCcccc-cCCcccc
Q 005765          369 NRDYDVAALANNLSQA-FRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISS---LRLGDDQESGSLFT-NSNWFAF  443 (678)
Q Consensus       369 d~d~d~~~~a~~l~qa-f~y~~~~~~d~eE~~~~~~~~~ed~~~dd~s~e~~~ss---~r~~~~~~~~~~~~-~~~~~~~  443 (678)
                      +|+|++.+.++++.++ |+|+++.+....|......+  +..|||||+++|++++   +||||++.+.++|+ |++||+|
T Consensus       542 d~~~~~~~~~~~i~~~~F~~~~de~~~~~e~~~~~~~--~~q~~~dE~~~~~l~~~~~~~lgd~~~~~~~~~~~~~~~~~  619 (838)
T KOG2073|consen  542 DRDYDVMGHLDNIADHNFSINIDENSPNAEDLEVEDR--LIQYFDDEKAETVLGAMGQLRLGDEDSEDSLKTWNGEELAG  619 (838)
T ss_pred             cccccchhhhhHhhhhhccccccccCchhhhhhhhcc--ccccccccchheeecccccccccchhhhhhhhccccccccc
Confidence            9999999999999998 99999999999999988888  9999999999999999   99999999999998 9999999


Q ss_pred             cccccccccccCCCCC---CCCCcccccC-CCCCCCCceEeecC-CCccccccCCCCCCCCCCCCCCCCCCCCcccCCCC
Q 005765          444 EDDRVSHERAAGSLAS---PSPNIEETGV-TNGGGHDQVTVGED-DLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCT  518 (678)
Q Consensus       444 ~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (678)
                      +|++....++.+..-+   -+++.+..+- ...++++..++|+- +...+..+... +.+.... .... +..+...|+.
T Consensus       620 ~d~~~~~~~~~~~~~~~~~D~e~~~t~n~~~~~~d~~~~~~~~~~~~~~~e~~~~~-~~~~~~~-~~~~-~~~~~~~p~~  696 (838)
T KOG2073|consen  620 QDDKFDINDSEQDSYSGFFDVEEWETYNADEDNDDDTSSVIGEGGESPTGEPSWGE-DSDENGS-ADST-DGTDEFTPDH  696 (838)
T ss_pred             cccccCCCcccccccccccccccccCCCCccccccchhhhhhhcCCCCCCcccccc-CCCCCcc-cccC-CCccccCCCC
Confidence            9998777766444200   0011111110 11223335555554 22222222222 2222111 1111 1111222222


Q ss_pred             C--CCCCcceeccCCCCCCCCCCCCCCcccCCCccccCCCCCCCCC--CCCCCCCCCCCCCCCCccccccCCccCCCCCC
Q 005765          519 T--EKPPTWVEWRERPDSSNPSSADEPVSIPNGELQDQGGNGDVDV--PEPSPSSSNTEDANITTTGELSKSIDENPSSK  594 (678)
Q Consensus       519 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lp~s~~~~~~~~  594 (678)
                      .  +..|.|+.|.+++....|..     ..|++.+++.++.+....  ...++   .+..++...  ++|...+..++..
T Consensus       697 ~~~~~~p~p~~~~~~~~~v~~~~-----~~~~~d~~s~~~~~n~~~~~~~~s~---~~~~~p~~~--a~~~~~~~~~e~~  766 (838)
T KOG2073|consen  697 PETENSPSPSKPPGSAEGVSPKA-----SEPNGDVSSLGEQDNELTDSDEQSE---GDETIPKRP--AVPDLTGKDTENA  766 (838)
T ss_pred             CcccCCCCCCCCccchhccCCcc-----cccccccccccccCCCCCccccccc---cccCCCCCc--ccccccccccccc
Confidence            2  56689999999988877766     334888877554443332  22222   111222111  5666666666655


Q ss_pred             CCCCCCCCC
Q 005765          595 PSEPSESGS  603 (678)
Q Consensus       595 p~~~~~~~~  603 (678)
                      -.+++.|+.
T Consensus       767 ~~~~~~~~~  775 (838)
T KOG2073|consen  767 VVRSTAPDS  775 (838)
T ss_pred             ccccCCCcc
Confidence            555554443

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []	Back alignment and domain information

>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG3546 consensus Collagens (type XV) [Extracellular structures]	Back alignment and domain information

>KOG3546 consensus Collagens (type XV) [Extracellular structures]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		678
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
3gdb_A		937	Endo-D, putative uncharacterized protein SPR0440;	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 57.9 bits (139), Expect = 9e-09
 Identities = 64/473 (13%), Positives = 119/473 (25%), Gaps = 154/473 (32%)

Query: 12  DLIGITSIMEVLIRLIGA----DEHMYTNFTESMQWIEDTNVLEMIVDKFSSSD-SPEVH 66
            +I     +   +RL        E M   F E    +   N  + ++    +    P + 
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---VLRIN-YKFLMSPIKTEQRQPSMM 108

Query: 67  ANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKR 126
                       +          +   + RL        +P   L  +L           
Sbjct: 109 TRMYIEQRDRLYNDNQVF-----AKYNVSRL--------QPYLKLRQAL----------- 144

Query: 127 LTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLK--L-LDVSSEESSLLT------ 177
                      +L     V +     +G+LG  G   K  + LDV               
Sbjct: 145 ----------LELRPAKNVLI-----DGVLG-SG---KTWVALDVCLSYKVQCKMDFKIF 185

Query: 178 --TYGKLQPP--LGKHRLKIVEFISVLLTVGSEAAEKELIR-HGAVRRILDLFFEYPYNN 232
                    P  + +   K++  I    T  S+ +    +R H     +  L    PY N
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 233 FLHHHVENIILSCLECKNAPLIEHLLHECNLVGKIL--------------EAEKNFTLKD 278
            L      ++L     +NA         C    KIL                  + +L  
Sbjct: 246 CL------LVLL--NVQNAKAWNAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 279 SNKPTVPAEGR-------------LPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQEN- 324
            +    P E +             LP  +             + +      I   +++  
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR------RLSI------IAESIRDGL 341

Query: 325 SEWNDW-QINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQ 383
           + W++W  +N       +E+           L       +  +Y+   +D  ++      
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLN-------VL-------EPAEYRKM-FDRLSV------ 380

Query: 384 AFRYGIYSNDDVDEAQGSLER-----DDEDVYFDDESAEVVISSLRLGDDQES 431
            F                L          DV       ++   SL     +ES
Sbjct: 381 -FP------PSAHIPTILLSLIWFDVIKSDV--MVVVNKLHKYSLVEKQPKES 424

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		678
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	95.31
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	93.89
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	93.81
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	92.94
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	92.59
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	92.43
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	92.27
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	92.23
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	92.12
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	92.09
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	90.91
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	90.83
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	87.62
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	87.47
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	85.61
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	85.55
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	81.42
3grl_A		651	General vesicular transport factor P115; vesicle t	81.22

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

Probab=95.31  E-value=1.1  Score=42.37  Aligned_cols=183  Identities=14%  Similarity=0.199  Sum_probs=108.0

Q ss_pred             HHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccCChhHHhhcCCHHHHHHHHHHHhcCCCCccchhhhhhhhh
Q 005765           40 SMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICI  119 (678)
Q Consensus        40 il~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr~sPn~Ll~~L~S~e~IeqLl~~mL~~~~~~S~LVngIsVlI  119 (678)
                      ....+.+.++|+.|+..|... +.+++.+|+..|..|....+ .....+.....|..|+..+-..  ...+..+++.++-
T Consensus        36 ~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~  111 (252)
T 4hxt_A           36 AIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPD-EAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALA  111 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence            456667789999999999875 48889999999999987542 2222333334455554443322  1333344444444


Q ss_pred             hccCccCCCCCcchhcccccccCCcccCChhhHHHHHH--hHHHHHHhhcCCCcccccccccccccCCccchhHHHHHHH
Q 005765          120 SLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFI  197 (678)
Q Consensus       120 ~LLe~~r~~~s~y~~~~~~~~~~~~~~v~p~~L~ail~--~L~df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKIvELI  197 (678)
                      .|...                       ++.....+..  .++.+.++|..+.                -..|...+..+
T Consensus       112 ~l~~~-----------------------~~~~~~~~~~~~~i~~L~~~l~~~~----------------~~~~~~a~~~L  152 (252)
T 4hxt_A          112 NIASG-----------------------PDEAIKAIVDAGGVEVLVKLLTSTD----------------SEVQKEAARAL  152 (252)
T ss_dssp             HHTTS-----------------------CHHHHHHHHHTTHHHHHHHHTTCSC----------------HHHHHHHHHHH
T ss_pred             HHHcC-----------------------CHHHHHHHHHCCCHHHHHHHHcCCC----------------HHHHHHHHHHH
Confidence            44320                       1222222222  3556666666322                24678888888


Q ss_pred             HHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCCChHHHHHHhhhccHHHHHHHh
Q 005765          198 SVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEA  270 (678)
Q Consensus       198 a~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNNfLH~~Ve~iI~~ILes~n~~Li~hLF~dc~Li~rILea  270 (678)
                      ..|... +......+++.|+++.++.++-.-  +.-+...+..++..+.. .+..... .+.+..++..+++.
T Consensus       153 ~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~-~l~~~~~i~~L~~l  220 (252)
T 4hxt_A          153 ANIASG-PDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS-GPTSAIK-AIVDAGGVEVLQKL  220 (252)
T ss_dssp             HHHTTS-CHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT-SBHHHHH-HHHHTTHHHHHHHG
T ss_pred             HHHHcC-CHHHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHc-CCHHHHH-HHHHCCCHHHHHHH
Confidence            888765 455667889999999999998742  33444444455555443 2333333 34456677777765

PyMOL of 4hxt

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		678
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.003

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		678
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	94.97
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	91.75
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	90.97
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	88.6
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	87.82
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	87.29

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.97  E-value=0.32  Score=47.37  Aligned_cols=182  Identities=11%  Similarity=0.165  Sum_probs=98.7

Q ss_pred             HHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccCChhHHhhcCCHHHHHHHHHHHhcCCCCccchhhhhhhhhh
Q 005765           41 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICIS  120 (678)
Q Consensus        41 l~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr~sPn~Ll~~L~S~e~IeqLl~~mL~~~~~~S~LVngIsVlI~  120 (678)
                      ..-+.+.++++.|+..+... +.+++.+|..+|..++...+ .....+.....+..|+.. +... ...+...++.++..
T Consensus       223 ~~~~~~~~~~~~Lv~ll~~~-~~~~~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~l~~l-l~~~-~~~v~~~a~~~L~~  298 (434)
T d1q1sc_         223 IEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSL-LTNP-KTNIQKEATWTMSN  298 (434)
T ss_dssp             HHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTGGGGHHHH-TTCS-SHHHHHHHHHHHHH
T ss_pred             HHHHhhcccchhcccccccc-hhhhhhchhhhhhhHHhhhh-HHHHHHHhccccchHHHh-hccc-chhhhHHHHHHHhh
Confidence            44456677889999988764 67788888888888776532 111121111222222221 1111 11122222222222


Q ss_pred             ccCccCCCCCcchhcccccccCCcccCChhhHHHHHH--hHHHHHHhhcCCCcccccccccccccCCccchhHHHHHHHH
Q 005765          121 LLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFIS  198 (678)
Q Consensus       121 LLe~~r~~~s~y~~~~~~~~~~~~~~v~p~~L~ail~--~L~df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKIvELIa  198 (678)
                      |..                       ..+.....+..  -++.+.++|..+..                ..|...+..+.
T Consensus       299 l~~-----------------------~~~~~~~~i~~~~~i~~li~~l~~~~~----------------~v~~~a~~~l~  339 (434)
T d1q1sc_         299 ITA-----------------------GRQDQIQQVVNHGLVPFLVGVLSKADF----------------KTQKEAAWAIT  339 (434)
T ss_dssp             HTT-----------------------SCHHHHHHHHHTTCHHHHHHHHHSSCH----------------HHHHHHHHHHH
T ss_pred             hcc-----------------------ccchhHHHHhhhhhHHHHHHHHhccCh----------------HHHHHHHHHHH
Confidence            222                       01222222222  24555566653321                36888899999


Q ss_pred             HHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCchhHHHHHHHHHHHhc----CCChHHHHHHhhhccHHHHH
Q 005765          199 VLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE----CKNAPLIEHLLHECNLVGKI  267 (678)
Q Consensus       199 ~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNNfLH~~Ve~iI~~ILe----s~n~~Li~hLF~dc~Li~rI  267 (678)
                      .|+...+......|++.|++..+++++ ++.=..+....+ .++..++.    .....-...+|+++.++++|
T Consensus       340 nl~~~~~~~~~~~l~~~~~i~~L~~ll-~~~d~~~~~~~l-~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i  410 (434)
T d1q1sc_         340 NYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQVIL-DAISNIFQAAEKLGETEKLSIMIEECGGLDKI  410 (434)
T ss_dssp             HHHHHSCHHHHHHHHHTTCHHHHHHHT-TSSCHHHHHHHH-HHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHH
T ss_pred             HHHhcCCHHHHHHHHHCCcHHHHHHHh-cCCCHHHHHHHH-HHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHH
Confidence            998888777778899999999999977 444333443322 33333332    23444556667777777765

PyMOL of d1q1sc_

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure