Citrus Sinensis ID: 005790

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------
Protein Sequence
MEFAAAKMPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELNQFDPTNDNQSSSTDKKPAGSVNVAAQRLKSVFHWPKLKEKKPERFKKSLDEGSDEPPTPLRKRFSKPSSLPNNKRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGRSRSSSFSKSSICSPTSLDKQKGIFTDNEDAGPSCSNQLFDDETPNNMTEKQSHRRSKSQYFCFGGPGLSVKTPVSKQRQNQNVNPSILSTA
Secondary Structure (PSIPRED)
cccccccccccccccHHHHcccccccccHHHHHHHcccHHHHHHHHHccccccccccHHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccccHHHHHHHHHccccHHHHHHcccccHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcHHHHHHHHHcccccccccccccccccccHHHHHHHccccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccccccccHHHHHHHccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccHHHHcccccccccccHHHHHHccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccEEccccccccccHHHHHHccccHHHHHHHHHccHHHHHHcccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccccccccccccEEEEEccccccccccccccccccEEEEcccccccccccccccccccccccccccHHHHcccHHHHHHccccccccccccccccccccccccccEEEEEEEEcccccEEccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
mefaaakmpptyfplrwestgdqwwyaspidwaaanGHYDLVRELLRIDGNHLIKLTSLRRIRRLetvwddeeqfdDVAKCRSKVARKLFLECkskngknslirAGYGGWLLYTAASAGDLGFVKQlldknpllvfgegeygvtDIFYAAARSKNCDVFRLIYDfavsprfltakggeleehiEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLtyrdkqgstilhaAAGRGQVEVVKDLIASFDiinstdhqgntplhiaAYRGQPAVVEALILAspsmisvkntsgetflHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMsapsinvnvrdndgmttldllkqrpqsassDILIRHLISaggifgcqdYSARRAIASHIKmlgngsspgtsfrisdtEIFLYTgidvssdgnansgsggmsssstelnqfdptndnqssstdkkpagsvNVAAQRLKSvfhwpklkekkperfkksldegsdepptplrkrfskpsslpnnkrtlsvrsnqssptakkRFASGIMHGVMqampqltvpggrsrsssfskssicsptsldkqkgiftdnedagpscsnqlfddetpnnmtekqshrrsksqyfcfggpglsvktpvskqrqnqnvnpsilsta
Flexible Loop (DISEMBL)
mefaaakmpptyFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDgnhlikltslrrirrletvwddeeqfddvAKCRSKVARKLFleckskngknslIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLtakggeleehIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTIlhaaagrgqVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELNQFDPTNDNqssstdkkpagsVNVAAQRlksvfhwpklkekkperfkksldegsdepptplrkrfskpsslpnnkrtlsvrsnqssptaKKRFASGIMHGVMQAMPQLTVPGGRSRSSSfskssicsptslDKQKGIFTDNEDAGPSCSNQLFDDETPNNMTEKQSHRRSKSQYFCFGGPGLsvktpvskqrqnqnvnpsilsta
Low Complexity Region (SEG)
MEFAAAKMPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVssdgnansgsggmssssTELNQFDPTNDNQSSSTDKKPAGSVNVAAQRLKSVFHWpklkekkperfkkSLDEGSDEPPTPLRKRFSKPSSLPNNKRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGRsrsssfskssicsptsLDKQKGIFTDNEDAGPSCSNQLFDDETPNNMTEKQSHRRSKSQYFCFGGPGLSVKTPVSKQRQNQNVNPSILSTA
Disordered region (IsUnstruct)
**********TYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLL*********DILIRHLISAGGIFGCQDYSARRAIASHIKMLGNG***GTSFRISDTEIFLYTGIDV***************************************************VFHW******************************************************************************************************************************************YFCFGG**************************
Disordered Region (DISOPRED)
***AAAKMPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELNQFDPTNDNQSSSTDKKPAGSVNVAAQRLKSVFHWPK****************************************************************************************************************************************YFCFGGPGLS***************PSILS**
Disordered Region (DISEMBL)
********PPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGN**************LNQF*******************NVAAQRLKSVFHWPKLKEKKPER**************************PNNKRT*************KRFASGIMHGVMQAMPQLT******************PTSLDKQKGIFTDNEDAGPSCSNQLFDDETP************KSQYFCFGGPGLSVKTPVSKQRQNQNVNPSILSTA
Disordered Region (DISPRO)
MEFAAAKMPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELNQFDPTN*********KPAGSVNVAAQRLKSVFHWP*****************************SKPSS**N*KRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGRSRSSSFSKSSICSPTSLDKQKGIFTDNEDAGPSCSNQLFDDETPNNMTEKQSHRRSKSQYFCFGGPGLSVKT*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFAAAKMPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELNQFDPTNDNQSSSTDKKPAGSVNVAAQRLKSVFHWPKLKEKKPERFKKSLDEGSDEPPTPLRKRFSKPSSLPNNKRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGRSRSSSFSKSSICSPTSLDKQKGIFTDNEDAGPSCSNQLFDDETPNNMTEKQSHRRSKSQYFCFGGPGLSVKTPVSKQRQNQNVNPSILSTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	677	2.2.26 [Sep-21-2011]
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.388	0.494	0.264	3e-14
O15084	1053	Serine/threonine-protein	no	no	0.277	0.178	0.330	5e-14
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.363	0.469	0.275	9e-14
Q505D1	1053	Serine/threonine-protein	yes	no	0.277	0.178	0.330	1e-13
Q495B1	522	Ankyrin repeat and death	no	no	0.324	0.421	0.300	4e-13
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.375	0.058	0.295	6e-13
B2RXR6	993	Serine/threonine-protein	no	no	0.279	0.190	0.336	1e-12
Q9GKW8	471	Ankyrin repeat and death	N/A	no	0.292	0.420	0.310	1e-12
Q96AX9	1013	E3 ubiquitin-protein liga	no	no	0.308	0.206	0.291	1e-12
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.502	0.180	0.270	2e-12

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 146/318 (45%), Gaps = 55/318 (17%)

Query: 112 LYTAASAGDLGFVKQLLDK----------NPL-----LVFGEGEYGVTDIFYAAARSKNC 156
            +++  +GDL  ++QL+D           +P      L+  + + G T ++ +AA +   
Sbjct: 14  FFSSVRSGDLSQLQQLVDNLTGDELIDESSPCSAVAELMSVQNDAGETAVYISAAENLE- 72

Query: 157 DVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLE 216
           D+FR +  F+                +E +    K +M   A H AA+ G+L I+KELL 
Sbjct: 73  DIFRYLIRFS---------------SLETVKIRSKSDM--NAFHVAAKRGHLGIVKELLR 115

Query: 217 NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS----TDHQGNTPLHIAAYR 272
              ++    D   ++ L+AAA +  +E+V    A  D+  S        G T LH A   
Sbjct: 116 LWPELCRICDASNTSPLYAAAVQDHLEIVN---AMLDVDPSCAMIVRKNGKTSLHTAGRY 172

Query: 273 GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFN 332
           G   +V+ALI    +++ VK+  G+T LH AV G          R +++++++       
Sbjct: 173 GLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKG----------RSLEVVEEILQADY-- 220

Query: 333 MEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQS 392
              I+N ++  G TALH+A T     ++  LL++  +I VN  +N   T +DL  +   S
Sbjct: 221 --TILNERDRKGNTALHIA-TRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYS 277

Query: 393 ASSDILIRHLISAGGIFG 410
            S+  +   L+ AG   G
Sbjct: 278 ESALEINEALVEAGAKHG 295

Arabidopsis thaliana (taxid: 3702)

>sp|O15084|ANR28_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5

 Score = 80.1 bits (196), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 24/212 (11%)

Query: 197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIIN 256
           RA+H AA  G+++++K L+ +  +V T +DK+  T LHAAA  G + VVK L+     +N
Sbjct: 175 RAIHWAAYMGHIEVVKLLVSHGAEV-TCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMN 233

Query: 257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD 316
             +  GNTPLH+A Y GQ  VV  LI    ++++ KN  G T LH          F    
Sbjct: 234 EPNAYGNTPLHVACYNGQDVVVNELI-DCGAIVNQKNEKGFTPLH----------FAAAS 282

Query: 317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM-AITGNVHLELVQLLMSAPSINVNVR 375
               L  +L  G   N  D +N K+ DG+T LHM A+ G       Q ++ + ++ ++  
Sbjct: 283 THGALCLELLVG---NGAD-VNMKSKDGKTPLHMTALHGR--FSRSQTIIQSGAV-IDCE 335

Query: 376 DNDGMTTLDLLKQRPQSASSDILIRHLISAGG 407
           D +G T L +  +       ++LI  LI++G 
Sbjct: 336 DKNGNTPLHIAARYGH----ELLINTLITSGA 363

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Homo sapiens (taxid: 9606)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 34/280 (12%)

Query: 28  SPIDWAAANGHYDLVRELL-RIDGNHLIKLTSLRRIRRLETVWDDEEQ-FDDVAKCRSKV 85
           +P+  A   G  DL+ E++   DG  L +L + +       ++   E  + D+ K   K 
Sbjct: 19  TPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVKILMKH 78

Query: 86  ARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTD 145
           +  +    K+KNG ++           + AA  G+L  +  L++ NP L F   +   T 
Sbjct: 79  SDSVLAGTKAKNGFDAF----------HIAAKNGNLQVLDVLIEANPELSF-TFDSSKTT 127

Query: 146 IFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARG 205
             + AA   + ++   + D  V    +    G+                   A+H+AAR 
Sbjct: 128 ALHTAASQGHGEIVCFLLDKGVDLAAIARSNGK------------------TALHSAARN 169

Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI-ASFDIINSTDHQGNT 264
           G+  I+K+L+E    ++T  DK+G T LH A      E+V  L+ A   +INS D++GNT
Sbjct: 170 GHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNT 229

Query: 265 PLHIAAYRGQPAVVEALI-LASPSMISVKNTSGETFLHSA 303
           PLHIA  + +  +V+ ++     S ++V N SGET L  A
Sbjct: 230 PLHIAVRKNRAEIVQTVLKYCEVSRVAV-NKSGETALDIA 268

Arabidopsis thaliana (taxid: 3702)

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 108/212 (50%), Gaps = 24/212 (11%)

Query: 197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIIN 256
           RA+H AA  G+++++K L+ +  +V T +DK+  T LHAAA  G + VVK L+     +N
Sbjct: 175 RAIHWAAYMGHIEVVKLLVSHGAEV-TCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMN 233

Query: 257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD 316
             +  GNTPLH+A Y GQ  VV  LI    + ++ KN  G T LH          F    
Sbjct: 234 EPNAYGNTPLHVACYNGQDVVVNELIDCGAN-VNQKNEKGFTPLH----------FAAAS 282

Query: 317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM-AITGNVHLELVQLLMSAPSINVNVR 375
               L  +L  G   N  D +N K+ DG+T LHM A+ G       Q ++ + ++ ++  
Sbjct: 283 THGALCLELLVG---NGAD-VNMKSKDGKTPLHMTALHGR--FSRSQTIIQSGAV-IDCE 335

Query: 376 DNDGMTTLDLLKQRPQSASSDILIRHLISAGG 407
           D +G T L +  +       ++LI  LI++G 
Sbjct: 336 DKNGNTPLHIAARYGH----ELLINTLITSGA 363

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

>sp|Q495B1|AKD1A_HUMAN Ankyrin repeat and death domain-containing protein 1A OS=Homo sapiens GN=ANKDD1A PE=2 SV=2

 Score = 77.0 bits (188), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 117/246 (47%), Gaps = 26/246 (10%)

Query: 199 VHAAARGGNLKILKELLENCTDV-LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
           +H AA+ G++ +L  ++E+  DV L + DK G T  H AA  GQ++ +  L+ S    N 
Sbjct: 128 LHCAAQKGHVPVLAFIMEDLEDVALDHVDKLGRTAFHRAAEHGQLDALDFLVGSGCDHNV 187

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDR 317
            D +GNT LH+AA RG  AV++ L+     +   +N  G T LHSA  G      + L R
Sbjct: 188 KDKEGNTALHLAAGRGHMAVLQRLVDIGLDL-EEQNAEGLTALHSAAGGSHPDCVQLLLR 246

Query: 318 ---QVKLMKQ-----LASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLE 359
               V  + Q     L    +   ED+           N  ++ G + LH+A+  N    
Sbjct: 247 AGSTVNALTQKNLSCLHYAALSGSEDVSRVLIHAGGCANVVDHQGASPLHLAVRHNF-PA 305

Query: 360 LVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRA 419
           LV+LL+++ S +VN  DN   T L L  +      +D+    L+ AG     +D   + A
Sbjct: 306 LVRLLINSDS-DVNAVDNRQQTPLHLAAEHAWQDIADM----LLIAGVDLNLRDKQGKTA 360

Query: 420 IASHIK 425
           +A  ++
Sbjct: 361 LAVAVR 366

Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 76.6 bits (187), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 129/291 (44%), Gaps = 37/291 (12%)

Query: 108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV 167
           G   L+ A+ AG    VK L+  N   V  + + G T + Y AA+  + +V + + D   
Sbjct: 107 GNTALHIASLAGQAEVVKVLV-TNGANVNAQSQNGFTPL-YMAAQENHLEVVKFLLDNGA 164

Query: 168 SPRFLTAKG-----GELEEHIEEIPSVY-----KWEMMNRAVHAAARGGNLKILKELLEN 217
           S    T  G       L++  +++ S+      K ++   A+H AAR  + K    LL+N
Sbjct: 165 SQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAALLLQN 224

Query: 218 CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAV 277
             +      K G T LH AA  G + V   L+     ++ T     TPLH+A+ RG   +
Sbjct: 225 DNNA-DVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARNDITPLHVASKRGNANM 283

Query: 278 VEALILASPSMISVKNTSGETFLHS-AVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI 336
           V+ L+L   + I  K   G T LH  A SG +      LDR   ++              
Sbjct: 284 VK-LLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPIL-------------- 328

Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRD--NDGMTTLDL 385
             +K  +G + LHMA  G+ HL  VQLL+     NV V D  ND +T L +
Sbjct: 329 --SKTKNGLSPLHMATQGD-HLNCVQLLLQH---NVPVDDVTNDYLTALHV 373

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 104/211 (49%), Gaps = 22/211 (10%)

Query: 197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIIN 256
           RA+H AA  G+L ++  L+ +  +V T +DK+G T LHAAA  GQ+ VVK L+     I+
Sbjct: 175 RALHWAAYMGHLDVVALLINHGAEV-TCKDKKGYTPLHAAASNGQISVVKHLLNLGVEID 233

Query: 257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD 316
             +  GNT LHIA Y GQ AVV  LI    + ++  N SG T LH A +   T+    L+
Sbjct: 234 EINVYGNTALHIACYNGQDAVVNELIDYGAN-VNQPNNSGFTPLHFAAA--STHGALCLE 290

Query: 317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRD 376
             V            N  D +N ++ DG++ LHM            L+ +   I  +  D
Sbjct: 291 LLVN-----------NGAD-VNIQSKDGKSPLHMTAVHGRFTRSQTLIQNGGEI--DCVD 336

Query: 377 NDGMTTLDLLKQRPQSASSDILIRHLISAGG 407
            DG T L +  +       ++LI  LI++G 
Sbjct: 337 KDGNTPLHVAARHGH----ELLINTLITSGA 363

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q9GKW8|AND1A_MACFA Ankyrin repeat and death domain-containing protein 1A (Fragment) OS=Macaca fascicularis GN=ANKDD1A PE=2 SV=3

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 109/219 (49%), Gaps = 21/219 (9%)

Query: 199 VHAAARGGNLKILKELLENCTDV-LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
           +H AA+ G++ +L  ++E+  DV L + DK G T  H AA  GQ++ +  L+ S    + 
Sbjct: 90  LHCAAQKGHVPVLAFIMEDLEDVALDHVDKLGRTAFHRAAEHGQLDALDFLVGSGCDHSV 149

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDR 317
            D +GNT LH+AA RG  AV++ L+     +   +N  G T LH+A  G   +  R L R
Sbjct: 150 KDKEGNTALHLAAGRGHMAVLQRLVDIGLDL-EEQNAEGLTALHAAAGGTHPHCVRLLLR 208

Query: 318 ---QVKLMKQ-----LASGQIFNMEDI----INAKN-----NDGRTALHMAITGNVHLEL 360
               V  + Q     L    +   ED+    I+A       + G + LH+A+  N    L
Sbjct: 209 AGSTVNALTQKNLSCLHYAALSGSEDVSRVLIHAGGCTNVADHGASPLHLAVMHNF-PAL 267

Query: 361 VQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILI 399
           VQLL+++ S ++N  DN   T L L  +      +++L+
Sbjct: 268 VQLLINSDS-DLNAMDNRQQTPLHLAAEHAWQDIAEMLL 305

Macaca fascicularis (taxid: 9541)

>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 100/233 (42%), Gaps = 24/233 (10%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDII 255
           N A+H AA G   +  + LL            Q ST LH A  RG +EVV+ L      +
Sbjct: 557 NTALHYAALGNQPEATRVLLSAGCRADAINSTQ-STALHVAVQRGFLEVVRALCERGCDV 615

Query: 256 NSTDHQGNTPLH--IAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFR 313
           N  D   +TPLH  I+A  G   +VE L       ++  N+ G T LH A       A R
Sbjct: 616 NLPDAHSDTPLHSAISAGTGASGIVEVLTEVPNIDVTATNSQGFTLLHHASLKGHALAVR 675

Query: 314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN 373
           ++              +     +++AK  DG TALH+A   N H E+ Q+L+     +VN
Sbjct: 676 KI--------------LARARQLVDAKKEDGFTALHLAALNN-HREVAQILIREGRCDVN 720

Query: 374 VRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKM 426
           VR+    + L L  Q+        L+  L+ AG     +D     A+  H+ +
Sbjct: 721 VRNRKLQSPLHLAVQQAHVG----LVPLLVDAGCSVNAEDEEGDTAL--HVAL 767

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 164/418 (39%), Gaps = 78/418 (18%)

Query: 28  SPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVAR 87
           SPI  AA   H D VR LL+ D    I   +L  +  L             A C      
Sbjct: 307 SPIHMAAQGDHLDCVRLLLQYDAE--IDDITLDHLTPLHVA----------AHCGHHRVA 354

Query: 88  KLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIF 147
           K+ L+  +K   NS  RA  G   L+ A     +  V +LL K    +    E G+T + 
Sbjct: 355 KVLLDKGAK--PNS--RALNGFTPLHIACKKNHV-RVMELLLKTGASIDAVTESGLTPLH 409

Query: 148 YAAARSKNCDVFRLIYDFAV---------SPRFLTAKGGELEEHIEEIPSVYKWEMMNRA 198
            A+       V  L+   A          +P  + A+ G  E        V K+ + N+A
Sbjct: 410 VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE--------VAKYLLQNKA 461

Query: 199 ------------VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVK 246
                       +H AAR G+  ++K LLEN  +        G T LH AA  G VE V 
Sbjct: 462 KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVL 520

Query: 247 DLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAV-- 304
            L+           +G TPLH+AA  G+  V E L+L   +  +    +G T LH AV  
Sbjct: 521 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE-LLLERDAHPNAAGKNGLTPLHVAVHH 579

Query: 305 ---------------------SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNND 343
                                +G+          QV++ + L            NA++  
Sbjct: 580 NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL-----LQYGGSANAESVQ 634

Query: 344 GRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
           G T LH+A     H E+V LL+S  + N N+ +  G+T L L+ Q      +D+LI+H
Sbjct: 635 GVTPLHLAAQEG-HAEMVALLLSKQA-NGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 690

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	677
359488622	680	PREDICTED: uncharacterized protein LOC10	0.986	0.982	0.731	0.0
224055673	665	predicted protein [Populus trichocarpa]	0.966	0.983	0.735	0.0
255537005	655	ankyrin repeat-containing protein, putat	0.948	0.980	0.718	0.0
449495351	665	PREDICTED: uncharacterized protein LOC10	0.932	0.948	0.686	0.0
356511548	686	PREDICTED: kinase D-interacting substrat	0.986	0.973	0.665	0.0
449441618	2819	PREDICTED: uncharacterized protein LOC10	0.932	0.223	0.699	0.0
356571419	670	PREDICTED: uncharacterized protein LOC10	0.954	0.964	0.655	0.0
225425880	668	PREDICTED: uncharacterized protein LOC10	0.961	0.974	0.642	0.0
147815182	738	hypothetical protein VITISV_024449 [Viti	0.961	0.882	0.641	0.0
356560523	668	PREDICTED: ankyrin-1-like [Glycine max]	0.924	0.937	0.635	0.0

>gi|359488622|ref|XP_003633791.1| PREDICTED: uncharacterized protein LOC100257639 [Vitis vinifera]

 Score =  996 bits (2576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/682 (73%), Positives = 579/682 (84%), Gaps = 14/682 (2%)

Query: 8   MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLET 67
           MPP+YFPLRWESTGDQWW+ASPIDWAAANGHYDLVRELLRID NHLIKLTSLRR+RRLET
Sbjct: 1   MPPSYFPLRWESTGDQWWFASPIDWAAANGHYDLVRELLRIDSNHLIKLTSLRRVRRLET 60

Query: 68  VWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQL 127
           VWDDEEQF DVA+CRS+VA+KL +E +SK GKNSLIR+GYGGW LYTAASAGDLGFV++L
Sbjct: 61  VWDDEEQFHDVARCRSQVAQKLLVEGESKKGKNSLIRSGYGGWFLYTAASAGDLGFVQEL 120

Query: 128 LDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP 187
           L+++PLLVFGEGEYGVTDI YAAARSKNC VFRL++DFAVSPRF T KGGELEE I EIP
Sbjct: 121 LERDPLLVFGEGEYGVTDILYAAARSKNCQVFRLVFDFAVSPRFSTGKGGELEEQIGEIP 180

Query: 188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKD 247
           SV+KWEM+NRAVHAAARGGNL+ILKELL +C+DVL YRD QGSTILHAAAGRGQVEVVK+
Sbjct: 181 SVFKWEMINRAVHAAARGGNLEILKELLSDCSDVLAYRDIQGSTILHAAAGRGQVEVVKE 240

Query: 248 LIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF 307
           L+ASFDIINSTD+QGNT LH+AAYRGQ AVVEALILASPS IS+KN +GETFLH AVSGF
Sbjct: 241 LVASFDIINSTDNQGNTALHVAAYRGQLAVVEALILASPSSISLKNNAGETFLHMAVSGF 300

Query: 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSA 367
           QT  FRRLDRQV+LMKQL  G++FNME++INAKNNDGRTALHMAI GN+H +LV+ L +A
Sbjct: 301 QTPGFRRLDRQVELMKQLVCGKVFNMEEVINAKNNDGRTALHMAIIGNIHSDLVEHLTTA 360

Query: 368 PSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKML 427
            SI+VN+RD DGMT LDLL+QRP+SASS+ILIR LISAGGIF CQDY+ARRAI SH+KM 
Sbjct: 361 RSIDVNMRDVDGMTPLDLLRQRPRSASSEILIRQLISAGGIFSCQDYTARRAIISHLKMQ 420

Query: 428 GN-GSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELNQFDPTNDNQSSST 486
           G  GSSPGTSF ISDTEIFL TGI+  SD + + GSGG+SS S + + F+   +N +SST
Sbjct: 421 GTGGSSPGTSFSISDTEIFLCTGIENESDVSMDQGSGGLSSYSADTSPFESALENPNSST 480

Query: 487 DKKPAGSVNVAAQRLKSVFHWPKLKEKKPERFKKSLDEGS----------DEPPTPLRKR 536
            KK A +VN AAQRLKS+ HWP+ KEKKPERFKK  D+ S          DE PTPLR+R
Sbjct: 481 YKK-ANTVNYAAQRLKSLLHWPRAKEKKPERFKKLGDDNSVESHKKGSNLDETPTPLRQR 539

Query: 537 FSKPSSLPNNKRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGRSRSSSFSKSS 596
           FSKP +L NNKRTL+VRSN +SP AKK+FASG+ HG+MQ+MP +T+P GRSRSSSFSKSS
Sbjct: 540 FSKPPALSNNKRTLAVRSNLASPVAKKKFASGLKHGIMQSMPHITIP-GRSRSSSFSKSS 598

Query: 597 ICSPTSLDKQKGIFTDNEDAGPSCSNQLFDDETPNNMTEKQS-HRRSKSQYFCFGGPGLS 655
           I SP SLDKQKGI+ +++   PS SNQ+F D TPN + +  S ++R  +QYFCFG PGLS
Sbjct: 599 ISSPGSLDKQKGIYVESDSGRPSSSNQIFADGTPNLIHKSGSANKRLMNQYFCFGAPGLS 658

Query: 656 VKTPVSKQRQNQNVNPSILSTA 677
           VK PV++ + NQ    S+LSTA
Sbjct: 659 VKNPVTRHQHNQTYKRSVLSTA 680

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055673|ref|XP_002298596.1| predicted protein [Populus trichocarpa] gi|222845854|gb|EEE83401.1| predicted protein [Populus trichocarpa]

 Score =  996 bits (2574), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/681 (73%), Positives = 570/681 (83%), Gaps = 27/681 (3%)

Query: 8   MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLET 67
           MPPTYFPLRWESTGDQWW+ASPIDWAAANGHYDLVRELLRID NHLI LTSLRRIRRLE+
Sbjct: 1   MPPTYFPLRWESTGDQWWFASPIDWAAANGHYDLVRELLRIDNNHLINLTSLRRIRRLES 60

Query: 68  VWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQL 127
           VWDDEEQFDDVAKCRS+VARKLF EC+SK GKNSLI+AGYGGWL+YTAASAGDL FV++L
Sbjct: 61  VWDDEEQFDDVAKCRSQVARKLFHECESKKGKNSLIQAGYGGWLMYTAASAGDLSFVQEL 120

Query: 128 LDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP 187
           L++NPLLVFGEGEYGVTD  YAAARSKN +VFRLIYDFA+SPRFLTAKG E EEHI EIP
Sbjct: 121 LERNPLLVFGEGEYGVTDTLYAAARSKNSEVFRLIYDFAISPRFLTAKG-EFEEHIGEIP 179

Query: 188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKD 247
           S+YKWEMMNRAVHAAARGG+L ILKELL NCTDVL YRDKQG+TILHAAA RGQVEVVKD
Sbjct: 180 SLYKWEMMNRAVHAAARGGSLTILKELLSNCTDVLAYRDKQGATILHAAAARGQVEVVKD 239

Query: 248 LIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF 307
           LIASF+I+NSTD+ GNT LHIAAYRGQ +VVEALI+ASP + S  N +GETFLH AVSGF
Sbjct: 240 LIASFEIMNSTDNLGNTALHIAAYRGQSSVVEALIVASPLLTSSINIAGETFLHMAVSGF 299

Query: 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSA 367
           Q  AFRRLDRQ++LMKQL SG++F MEDIINAKNN+GRT LHMAI GNVH +L +LLMSA
Sbjct: 300 QNPAFRRLDRQIELMKQLMSGKVFKMEDIINAKNNEGRTTLHMAIIGNVHSDLTKLLMSA 359

Query: 368 PSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKML 427
            SINVNVRD DGMT LDLL+QRP SASSDIL+R LISAGGIFGCQDY+ RRAIAS +KM 
Sbjct: 360 RSINVNVRDADGMTPLDLLRQRPHSASSDILMRQLISAGGIFGCQDYTTRRAIASRLKMQ 419

Query: 428 GNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELNQFDPTNDNQSSSTD 487
           GNG SPG+SFRISD EIFLYTGI+++SD  A+  + G+S SS+EL+  D TNDNQ S+  
Sbjct: 420 GNGGSPGSSFRISDNEIFLYTGIEIASDAYADPATAGVSPSSSELSHPDQTNDNQGSALH 479

Query: 488 KKPAGSVNVAAQRLKSVFHWPKLKEKKPERFKKSLDE----------GSDEPPTPLRKRF 537
           K+   S N AAQ+LK V  WP+LK+KKPE+ +KS+D+          GS+E PTPLR+RF
Sbjct: 480 KR-RDSFNYAAQQLKRVLQWPRLKDKKPEKLRKSIDQGSVASGKKCSGSEETPTPLRQRF 538

Query: 538 SKPSSLPNNKRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGRSRSSSFSKSSI 597
           S  SS+PNNKRTLSVRSNQSSPTAKK+ ASG+MH             GRSRSSSFSKSSI
Sbjct: 539 SNASSIPNNKRTLSVRSNQSSPTAKKKLASGMMH-------------GRSRSSSFSKSSI 585

Query: 598 CSPTSLDKQKGIFTDNEDAGPSCSNQLFDDETPN-NMTEKQSHRRSKSQYFCFGGPGLSV 656
            SP+SLDKQKG+F +++ AGPS SN+LFDD TPN    E  + ++ +SQYFCFG   LSV
Sbjct: 586 SSPSSLDKQKGVFIESDVAGPSTSNRLFDDGTPNVKEKEGSTSKKLRSQYFCFGAASLSV 645

Query: 657 KTPVSKQRQNQNVNPSILSTA 677
           KTPVS+ R +Q  NPS+LS A
Sbjct: 646 KTPVSRHR-SQGSNPSVLSVA 665

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537005|ref|XP_002509569.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223549468|gb|EEF50956.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/683 (71%), Positives = 560/683 (81%), Gaps = 41/683 (6%)

Query: 8   MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLET 67
           MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRID NHLIKLTSLRRIRRLET
Sbjct: 1   MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDNNHLIKLTSLRRIRRLET 60

Query: 68  VWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQL 127
           VWDDEEQF DVAKCRS+VARKLF EC++K GKNSLI AGYGGWLLYTAASAGDL FV++L
Sbjct: 61  VWDDEEQFHDVAKCRSQVARKLFHECEAKKGKNSLIEAGYGGWLLYTAASAGDLSFVQEL 120

Query: 128 LDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP 187
           L++N LLVFGEGE+GVTD     AR++                     GGE EEHI E P
Sbjct: 121 LERNSLLVFGEGEFGVTD---XXARTR---------------------GGEFEEHIGEFP 156

Query: 188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKD 247
           S+YKWEM+NRAVHAAARGGN  IL+ELL N TDVL YRDK+GSTILHAAA RGQVEVVK+
Sbjct: 157 SLYKWEMINRAVHAAARGGNSTILRELLSNSTDVLAYRDKEGSTILHAAAARGQVEVVKE 216

Query: 248 LIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF 307
           LIASFDIINSTD QGNT LHIAAYRGQ +VVEALI+ASP++IS  N +GETFLH AVSG 
Sbjct: 217 LIASFDIINSTDRQGNTALHIAAYRGQSSVVEALIVASPTLISSTNNAGETFLHMAVSGL 276

Query: 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSA 367
           QT AF+RLDRQ++LMKQL  G+ F++ DIINAKNN+GR+ALH AI GNVH +LVQLLMSA
Sbjct: 277 QTPAFKRLDRQIELMKQLIGGKTFDVADIINAKNNEGRSALHTAIIGNVHSDLVQLLMSA 336

Query: 368 PSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKML 427
            SINVNV D DGMT LDLLKQ P +ASSDILIR LISAGGIFGCQDY+ARRAIAS +KM 
Sbjct: 337 QSINVNVCDADGMTPLDLLKQGPHTASSDILIRQLISAGGIFGCQDYTARRAIASRLKMQ 396

Query: 428 GNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELNQFDPTNDNQSSSTD 487
           G G SPGTSFRISD EIFLYTGI+++SD +A+  S GMSS+S E    D  N+N++S+T+
Sbjct: 397 GTGVSPGTSFRISDAEIFLYTGIEIASDASADRASEGMSSASAE--HLDSINENRNSTTN 454

Query: 488 KKPAGSVNVAAQRLKSVFHWPKLKEKKPERFKKSLD----------EGSDEPPTPLRKRF 537
           +K   S+N AAQ+LK V HWP+LK KKPERF KSLD            S+E PTPLR++F
Sbjct: 455 RKSV-SINNAAQQLKRVLHWPRLKGKKPERFSKSLDLSSAESCKKYSSSEEAPTPLRQKF 513

Query: 538 SKPSSLPNNKRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGRSRSSSFSKSSI 597
            KPS+LPNNKRTLSVRSNQSSPTAKK+FASGIMHGV+QAMPQ+TVP GRSRSSSFSKSSI
Sbjct: 514 MKPSALPNNKRTLSVRSNQSSPTAKKKFASGIMHGVIQAMPQITVP-GRSRSSSFSKSSI 572

Query: 598 CSPTSLDKQKGIFTDNEDAGPSCSNQLFDDETPNNMTEKQ---SHRRSKSQYFCFGGPGL 654
            SP+SLDKQKGIF D + AGPS SNQ FDD TPN + ++    S+++S+SQYFCFG  GL
Sbjct: 573 SSPSSLDKQKGIFIDTDAAGPSSSNQSFDDGTPNVVGKESSTTSNKKSRSQYFCFGASGL 632

Query: 655 SVKTPVSKQRQNQNVNPSILSTA 677
           +VK PVS+QRQ+Q+ NP ++S A
Sbjct: 633 AVKNPVSRQRQSQSSNPPVISVA 655

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495351|ref|XP_004159808.1| PREDICTED: uncharacterized protein LOC101227565 [Cucumis sativus]

 Score =  895 bits (2313), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/669 (68%), Positives = 529/669 (79%), Gaps = 38/669 (5%)

Query: 8   MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLET 67
           MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVR+LLR+DGNHLIKLTSLRRIRRLET
Sbjct: 1   MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRQLLRLDGNHLIKLTSLRRIRRLET 60

Query: 68  VWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQL 127
           VWDDEEQF DVAKCRS V+RKL +E +SK GKNSLIRAGYGGWL+YTAASAGDLGFV++L
Sbjct: 61  VWDDEEQFHDVAKCRSDVSRKLLMESESKKGKNSLIRAGYGGWLIYTAASAGDLGFVQEL 120

Query: 128 LDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP 187
           L +NPLLVFGEGEYGVTDI YAAAR                        G L+EHI EIP
Sbjct: 121 LQRNPLLVFGEGEYGVTDILYAAARR-----------------------GVLDEHIGEIP 157

Query: 188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKD 247
           +VYKWEMMNR VHAAARGGNLKILKELL +C+DVL  RD QGST+LHAAAGRGQVEV+K 
Sbjct: 158 AVYKWEMMNRGVHAAARGGNLKILKELLADCSDVLACRDAQGSTVLHAAAGRGQVEVLKY 217

Query: 248 LIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF 307
           L+ +F IINS DHQGNT LHIAA RGQ A VEALI ASPS IS++N +GETFLH A+SGF
Sbjct: 218 LVQTFPIINSIDHQGNTALHIAACRGQLAAVEALIAASPSSISLRNNAGETFLHKAISGF 277

Query: 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSA 367
           QT AFRRLDRQ+ L+K +  G++ NM+DIINA+NNDGRTALHMA  GNVH +LVQLLM+ 
Sbjct: 278 QTPAFRRLDRQIDLLKNVICGKVHNMDDIINARNNDGRTALHMAAIGNVHSDLVQLLMTT 337

Query: 368 PSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKML 427
            SI++NVRD DGMT LD L+Q  QSAS+D+LIR LISAGG+FGC DY+ R+AIAS +KM 
Sbjct: 338 GSIDLNVRDMDGMTPLDYLRQNTQSASADVLIRQLISAGGMFGCHDYNTRKAIASRLKMQ 397

Query: 428 GNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELNQFDPTNDNQSSSTD 487
           G GSSPGTSFR+SDTEI LYTGI+ +SD   + GS GMSSSS EL+ +D  N+N +SS+ 
Sbjct: 398 GLGSSPGTSFRVSDTEILLYTGIENASDTIPDHGSAGMSSSSVELSPYDLPNENPNSSST 457

Query: 488 KKPAGSVNVAAQRLKSVFHWPKLKEKKP-ERFKKSLDEGSDEP-------------PTPL 533
            K +GSVN AAQRLKSVFHWP++K+KK  E  KK +DEGS E              PTPL
Sbjct: 458 IKKSGSVNSAAQRLKSVFHWPRIKDKKKSETSKKQMDEGSIEESHKKYSSSDEAPTPTPL 517

Query: 534 RKRFSKPSSLPNNKRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGRSRSSSFS 593
           R+RFSKP +LPN+KRTLSVRSNQSSP+AKK+ A+G+M GV Q MP + +P  RSRSSSFS
Sbjct: 518 RQRFSKPLTLPNHKRTLSVRSNQSSPSAKKKHATGLMRGVSQGMPHVVIP-HRSRSSSFS 576

Query: 594 KSSICSPTSLDKQKGIFTDNEDAGPSCSNQLFDDETPNNMTEKQSHRRSKSQYFCFGGPG 653
           KSS+ SP S+DKQKGI  D++ AGPS SNQ   +ETPN   +    R+ +SQYFCFG   
Sbjct: 577 KSSLSSPGSVDKQKGICFDSDGAGPSYSNQAIGNETPNLGKQGSVDRKLRSQYFCFGAGS 636

Query: 654 LSVKTPVSK 662
           L  KT VSK
Sbjct: 637 LIGKTTVSK 645

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511548|ref|XP_003524487.1| PREDICTED: kinase D-interacting substrate of 220 kDa-like [Glycine max]

 Score =  882 bits (2279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/688 (66%), Positives = 554/688 (80%), Gaps = 20/688 (2%)

Query: 8   MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLET 67
           MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLR+D NHL KLTSLRRIRRLE 
Sbjct: 1   MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRMDSNHLFKLTSLRRIRRLEV 60

Query: 68  VWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQL 127
           VWDDEEQF+D+AK RS+VA+KL LE +SK GKNSLIRAGYGGWL+YTAASAGDLGFV+ L
Sbjct: 61  VWDDEEQFNDIAKFRSEVAQKLLLESESKRGKNSLIRAGYGGWLMYTAASAGDLGFVQVL 120

Query: 128 LDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP 187
           L++NPLLVFGEGEYGVTDI YAAARSKNC+VFRL++DFAVSPRFL+ KGG +EE++ +IP
Sbjct: 121 LERNPLLVFGEGEYGVTDILYAAARSKNCEVFRLLFDFAVSPRFLSGKGGIMEENVGDIP 180

Query: 188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKD 247
           SVY+WE+ NRAVHAAARGGNLKIL+ELL NC+DVL YRD  GST+LHAAAGRGQVEV+K 
Sbjct: 181 SVYRWELTNRAVHAAARGGNLKILEELLANCSDVLAYRDADGSTVLHAAAGRGQVEVIKY 240

Query: 248 LIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF 307
           L +SFD+INSTDHQGNT LH+A+ RGQ    EAL+ A PS++S++N SGETFLH AVSGF
Sbjct: 241 LTSSFDMINSTDHQGNTALHVASSRGQLPTAEALVSAFPSLMSLRNNSGETFLHRAVSGF 300

Query: 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSA 367
           +++AFRRLD+QV+L++ + SG+ F++ DIIN KNND RTALHMAI GN+H +LVQLLM+A
Sbjct: 301 KSHAFRRLDKQVELLRNMLSGKNFHVADIINVKNNDRRTALHMAIIGNIHTDLVQLLMTA 360

Query: 368 PSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKML 427
           PSINVN+ D DGMT LD L+Q P+SASSDILI+ LISAGG+FGCQ +S+R+AIASH++M 
Sbjct: 361 PSINVNICDVDGMTPLDYLRQHPKSASSDILIKKLISAGGMFGCQGHSSRKAIASHLRMQ 420

Query: 428 GNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELNQFD-PTNDNQSSST 486
             GSSPGTSFR+SDTE+FLYTGI+  SD + + GSGGMSSSS+E   +D    +N+    
Sbjct: 421 SIGSSPGTSFRVSDTEMFLYTGIENVSDASGDHGSGGMSSSSSEHIPYDLNATENRVPIA 480

Query: 487 DKKPAGSVNVAAQRLKSVFHWPKLKEKKPERFKKS--LDEGS-----------DEPPTPL 533
            K+P+ +VN AA  LK V  WP++K+KK E FKKS   DEGS           DE PTPL
Sbjct: 481 AKRPS-TVNHAAASLKRVLLWPRVKDKKSEGFKKSSTTDEGSVDSCRKRNNSFDETPTPL 539

Query: 534 RKRFSKPSSLPNNKRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGRSRSSSFS 593
           R+RFS+PSSLPNNKRTLSVRS QSSP AKKRFASG +HGV+Q+MP   V G    SS  S
Sbjct: 540 RQRFSRPSSLPNNKRTLSVRSQQSSPNAKKRFASGPVHGVIQSMPHANVSGRSRSSSF-S 598

Query: 594 KSSICSPTSLDKQKGIFTDNEDAG---PSCSNQLFDDETPNNMTEKQS-HRRSKSQYFCF 649
           KSSI SP S+DKQKGIF DN+ AG    S  +   DD+    + ++ S  R+ +  YFCF
Sbjct: 599 KSSISSPRSIDKQKGIFIDNDIAGPSCSSQPSPPPDDDESPKLVKRTSVGRKLRDHYFCF 658

Query: 650 GGPGLSVKTPVSKQRQNQNVNPSILSTA 677
           G PG++VK  V +Q+++Q+    +++ A
Sbjct: 659 GAPGINVKNSVHRQQESQSYKAHVVAVA 686

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441618|ref|XP_004138579.1| PREDICTED: uncharacterized protein LOC101220661 [Cucumis sativus]

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/646 (69%), Positives = 526/646 (81%), Gaps = 15/646 (2%)

Query: 31   DWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLF 90
            DWAAANGHYDLVR+LLR+DGNHLIKLTSLRRIRRLETVWDDEEQF DVAKCRS V+RKL 
Sbjct: 1395 DWAAANGHYDLVRQLLRLDGNHLIKLTSLRRIRRLETVWDDEEQFHDVAKCRSDVSRKLL 1454

Query: 91   LECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAA 150
            +E +SK GKNSLIRAGYGGWL+YTAASAGDLGFV++LL +NPLLVFGEGEYGVTDI YAA
Sbjct: 1455 MESESKKGKNSLIRAGYGGWLIYTAASAGDLGFVQELLQRNPLLVFGEGEYGVTDILYAA 1514

Query: 151  ARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKI 210
            ARSKN  VFR++YDFA+SPRF T +GG L+EHI EIP+VYKWEMMNR VHAAARGGNLKI
Sbjct: 1515 ARSKNDGVFRILYDFAISPRFSTGRGGVLDEHIGEIPAVYKWEMMNRGVHAAARGGNLKI 1574

Query: 211  LKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAA 270
            LKELL +C+DVL  RD QGST+LHAAAGRGQVEV+K L+ +F IINS DHQGNT LHIAA
Sbjct: 1575 LKELLADCSDVLACRDAQGSTVLHAAAGRGQVEVLKYLVQTFPIINSIDHQGNTALHIAA 1634

Query: 271  YRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQI 330
             RGQ A VEALI ASPS IS++N +GETFLH A+SGFQT AFRRLDRQ+ L+K +  G++
Sbjct: 1635 CRGQLAAVEALIAASPSSISLRNNAGETFLHKAISGFQTPAFRRLDRQIDLLKNVICGKV 1694

Query: 331  FNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRP 390
             NM+DIINA+NNDGRTALHMA  GNVH +LVQLLM+  SI++NVRD DGMT LD L+Q  
Sbjct: 1695 HNMDDIINARNNDGRTALHMAAIGNVHSDLVQLLMTTGSIDLNVRDMDGMTPLDYLRQNT 1754

Query: 391  QSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGI 450
            QSAS+D+LIR LISAGG+FGC DY+ R+AIAS +KM G GSSPGTSFR+SDTEI LYTGI
Sbjct: 1755 QSASADVLIRQLISAGGMFGCHDYNTRKAIASRLKMQGLGSSPGTSFRVSDTEILLYTGI 1814

Query: 451  DVSSDGNANSGSGGMSSSSTELNQFDPTNDNQSSSTDKKPAGSVNVAAQRLKSVFHWPKL 510
            + +SD   + GS GMSSSS EL+ +D  N+N +SS+  K +GSVN AAQRLKSVFHWP++
Sbjct: 1815 ENASDTIPDHGSAGMSSSSVELSPYDLPNENPNSSSTIKKSGSVNSAAQRLKSVFHWPRI 1874

Query: 511  KE-KKPERFKKSLDEGSDE-------------PPTPLRKRFSKPSSLPNNKRTLSVRSNQ 556
            K+ KK E  KK +DEGS E              PTPLR+RFSKP +LPN+KRTLSVRSNQ
Sbjct: 1875 KDKKKSETSKKQMDEGSIEESHKKYSSSDEAPTPTPLRQRFSKPLTLPNHKRTLSVRSNQ 1934

Query: 557  SSPTAKKRFASGIMHGVMQAMPQLTVPGGRSRSSSFSKSSICSPTSLDKQKGIFTDNEDA 616
            SSP+AKK+ A+G+M GV Q MP + +P  RSRSSSFSKSS+ SP S+DKQKGI  D++ A
Sbjct: 1935 SSPSAKKKHATGLMRGVSQGMPHVVIP-HRSRSSSFSKSSLSSPGSVDKQKGICFDSDGA 1993

Query: 617  GPSCSNQLFDDETPNNMTEKQSHRRSKSQYFCFGGPGLSVKTPVSK 662
            GPS SNQ   +ETPN   +    R+ +SQYFCFG   L  KT VSK
Sbjct: 1994 GPSYSNQAIGNETPNLGKQGSVDRKLRSQYFCFGAGSLIGKTTVSK 2039

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571419|ref|XP_003553874.1| PREDICTED: uncharacterized protein LOC100805213 [Glycine max]

 Score =  854 bits (2207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/694 (65%), Positives = 538/694 (77%), Gaps = 48/694 (6%)

Query: 8   MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLET 67
           MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLR+D NHL KLTSLRRIRRLE 
Sbjct: 1   MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRMDSNHLFKLTSLRRIRRLEV 60

Query: 68  VWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQL 127
           VWDDEEQF+DVAK RS+VA+KL LE +SK GKNSLIRAGYGGWL+YTAASAGDLGFV+ L
Sbjct: 61  VWDDEEQFNDVAKFRSEVAQKLLLESESKRGKNSLIRAGYGGWLMYTAASAGDLGFVQVL 120

Query: 128 LDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP 187
           L++N LLVFGEGEYGVTDI YAAARS                       G +EEH+ +IP
Sbjct: 121 LERNSLLVFGEGEYGVTDILYAAARS-----------------------GMVEEHVGDIP 157

Query: 188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKD 247
           SVY+WEM NRAVHAAARGGNLKIL+ELL NC+DVL YRD  GST+LHAAAGRGQVEVVK 
Sbjct: 158 SVYRWEMTNRAVHAAARGGNLKILEELLANCSDVLAYRDADGSTVLHAAAGRGQVEVVKY 217

Query: 248 LIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF 307
           L +SFD+INSTDHQGNT LH+AA RGQ    EAL+ A PS+IS++N SGE FLH AVSGF
Sbjct: 218 LTSSFDMINSTDHQGNTALHVAASRGQLPTAEALVSAFPSLISLRNNSGEIFLHKAVSGF 277

Query: 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSA 367
           +++AFRRLD+QV+L++ + SG+ F++ DIIN KNNDGRTALHMAI GN+H +LVQLLM+A
Sbjct: 278 KSHAFRRLDKQVELLRNMLSGKNFHLADIINVKNNDGRTALHMAIIGNIHTDLVQLLMTA 337

Query: 368 PSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKML 427
           PSINVN+ D DGMT LD L+Q P+SASSDILI+ LISAGG+FGCQ +S+R+AIASH++M 
Sbjct: 338 PSINVNICDVDGMTPLDYLRQHPKSASSDILIKKLISAGGMFGCQGHSSRKAIASHLRMQ 397

Query: 428 GNGSSPGTSFRISDTEIFLYTGIDVSSDGN-ANSGSGGMSSSSTELNQFDPTNDNQSSST 486
             GSSPGTSFR+SDTEIFLYTGI+  SD + A+ GSGGMSSSS+E   +DP         
Sbjct: 398 SIGSSPGTSFRVSDTEIFLYTGIENVSDASAADHGSGGMSSSSSEHIPYDPNPTENRVPI 457

Query: 487 DKKPAGSVNVAAQRLKSVFHWPKLKEKKPERFKK--SLDEGS-----------DEPPTPL 533
             K   +VN AA RLK V  WP++K++K E FKK  + DEGS           DE PTPL
Sbjct: 458 ATKRHSTVNHAAARLKRVLLWPRVKDRKSEGFKKPCTTDEGSVDSCRKWNNSFDETPTPL 517

Query: 534 RKRFSKPSSLPNNKRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGRSRSSSFS 593
           R+RFS+PSSLPNNKRTLSVRS+QSSP AKKRFASG++HGVMQ++P   V  GRSRSSSFS
Sbjct: 518 RQRFSRPSSLPNNKRTLSVRSHQSSPNAKKRFASGLVHGVMQSLPHAKV-SGRSRSSSFS 576

Query: 594 KSSICSPTSLDKQKGIFTDNEDAGPSCSNQ----------LFDDETPNNMTEKQSHRRSK 643
           KSSI SP S+DKQKGIF DN+ AGPSCS++            DDE+P  +      R+ +
Sbjct: 577 KSSISSPRSIDKQKGIFIDNDIAGPSCSSEQQLPPPPPPQPDDDESPKLVKRTSVGRKLR 636

Query: 644 SQYFCFGGPGLSVKTPVSKQRQNQNVNPSILSTA 677
             YFCFG PGL+VK  V +Q+++Q+    +++ A
Sbjct: 637 GHYFCFGAPGLNVKNSVHRQQESQSYKAHVVAVA 670

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425880|ref|XP_002270297.1| PREDICTED: uncharacterized protein LOC100242500 [Vitis vinifera] gi|269980442|gb|ACZ56416.1| ankyrin-like protein [Vitis vinifera]

 Score =  850 bits (2197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/666 (64%), Positives = 515/666 (77%), Gaps = 15/666 (2%)

Query: 8   MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLET 67
           MPP+YFPLRWESTGDQWWYASPIDWAAANGHYDLVRELL +D N LIKLTSLRRIRRLET
Sbjct: 1   MPPSYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLHLDTNLLIKLTSLRRIRRLET 60

Query: 68  VWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQL 127
           VWDDEEQFDDVA+CRS+VARKL  EC++K G NSLIRAGYGGWLLYTAASAGD+GFVK+L
Sbjct: 61  VWDDEEQFDDVARCRSQVARKLLRECQTKRGHNSLIRAGYGGWLLYTAASAGDVGFVKEL 120

Query: 128 LDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP 187
           L ++PLLVFGEGEYGVTDIFYAAARSKN +VFRL+ DF++SP    + G EL+E  +E+ 
Sbjct: 121 LQRDPLLVFGEGEYGVTDIFYAAARSKNSEVFRLLLDFSISPGCFRSSGEELDEQSDEVS 180

Query: 188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKD 247
             ++WEM NRAVHAAARGGNL+ILKELL +CTDVL YRD QGSTILH A+GRGQVE+VK 
Sbjct: 181 PEFRWEMRNRAVHAAARGGNLEILKELLHDCTDVLVYRDMQGSTILHTASGRGQVEIVKG 240

Query: 248 LIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF 307
           L+ S+DIINSTD+QGNT L++AAYRG   V+E LILASPS I + N  G+T LH AV+GF
Sbjct: 241 LLESYDIINSTDNQGNTALNVAAYRGYLTVLEVLILASPSSIFLTNNYGDTLLHMAVAGF 300

Query: 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSA 367
           ++  FRRLDRQ++LMKQL  G+I NMEDIINAKNNDGRTALHMA+ GN+  ++V+LLM+ 
Sbjct: 301 RSPGFRRLDRQIELMKQLLRGKIVNMEDIINAKNNDGRTALHMAVIGNIQSDVVELLMTV 360

Query: 368 PSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKML 427
           PSIN+N+RD DGMT LDLLKQRPQSASS+ILI+ LISAGGI  CQDY AR A+ SH+KM 
Sbjct: 361 PSINLNIRDADGMTPLDLLKQRPQSASSEILIKELISAGGIANCQDYMARSALVSHLKMK 420

Query: 428 GNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELNQFDPTNDNQSSSTD 487
           G GSSPGTSFRISD EI LY+GI+ +S+ + +  SG +SS S+EL+  DP  D   +  +
Sbjct: 421 GIGSSPGTSFRISDAEILLYSGIENASNASPDPASGELSSWSSELDHLDPATDINLADDN 480

Query: 488 KKPAGSVNVAAQRLKSVFHWPKLKEKKPERF---KKSLD-----EGSDEPPTPLRKRFSK 539
           K   GSVN AA+RLK + HWP+ + K   +      SLD        ++ PTPLR RFSK
Sbjct: 481 K---GSVNNAARRLKILLHWPRKQGKADSKTLGEDDSLDSYKISRNLEDDPTPLRHRFSK 537

Query: 540 PSSLPNNKRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGRSRSSSFSKSSICS 599
            +SLPNNKR +S RS   SP+ KK+FA G+MHGV++AMPQL  P   S S  FS+S + S
Sbjct: 538 LTSLPNNKRVVSFRSLLPSPSTKKKFAVGLMHGVIRAMPQLADP-AESSSPPFSESPVSS 596

Query: 600 PTSLDKQKGIFTDNEDAGPSCSNQLFDDETPNNMTEKQS--HRRSKSQYFCFGGPGLSVK 657
           P S +KQKGI  +N   GPS SNQ         M  KQS  +++  +QYFCFG  G++V+
Sbjct: 597 PRSAEKQKGIAIENGTTGPSTSNQGVKG-GKREMNNKQSSFNKKMMNQYFCFGAQGIAVE 655

Query: 658 TPVSKQ 663
             +  Q
Sbjct: 656 NSIRSQ 661

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815182|emb|CAN63350.1| hypothetical protein VITISV_024449 [Vitis vinifera]

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/666 (64%), Positives = 513/666 (77%), Gaps = 15/666 (2%)

Query: 8   MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLET 67
           MPP+YFPLRWESTGDQWWYASPIDWAAANGHYDLVRELL +D N LIKLTSLRRIRRLET
Sbjct: 1   MPPSYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLHLDTNLLIKLTSLRRIRRLET 60

Query: 68  VWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQL 127
           VWDDEEQFDDVA+CRS+VARKL  EC++K G NSLIRAGYGGWLLYTAASAGD+GFVK+L
Sbjct: 61  VWDDEEQFDDVARCRSQVARKLLRECQTKRGHNSLIRAGYGGWLLYTAASAGDVGFVKEL 120

Query: 128 LDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP 187
           L ++PLLVFGEGEYGVTDIFYAAARSKN +VFRL+ DF++SP    + G EL+E  +E+ 
Sbjct: 121 LQRDPLLVFGEGEYGVTDIFYAAARSKNSEVFRLLLDFSISPGCFRSSGEELDEQSDEVS 180

Query: 188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKD 247
             ++WEM NRAVHAAARGGNL+ILKELL +CTDVL YRD QGSTILH A+GRGQVE+VK 
Sbjct: 181 PEFRWEMRNRAVHAAARGGNLEILKELLHDCTDVLVYRDMQGSTILHTASGRGQVEIVKG 240

Query: 248 LIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF 307
           L+ S+DIINSTD QGNT L++AAYRG   V+E LILASPS I + N  G+T LH AV+GF
Sbjct: 241 LLESYDIINSTDDQGNTALNVAAYRGYLTVLEVLILASPSSIFLTNNYGDTLLHMAVAGF 300

Query: 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSA 367
           ++  FRRLDRQ++LMKQL  G+I NMEDIINAKNNDGRTALHMA+ GN+  ++V+LLM+ 
Sbjct: 301 RSPGFRRLDRQIELMKQLLRGKIVNMEDIINAKNNDGRTALHMAVIGNIQSDVVELLMTV 360

Query: 368 PSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKML 427
           PSIN+N+RD DGMT LDLLKQRPQSASS+ILI+ LISAGG   CQDY AR A+ SH+KM 
Sbjct: 361 PSINLNIRDADGMTPLDLLKQRPQSASSEILIKELISAGGXANCQDYMARSALVSHLKMK 420

Query: 428 GNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELNQFDPTNDNQSSSTD 487
           G GSSPGTSFRISD EI LY+GI+ +S+ + +  SG +SS S+EL+  DP  D   +  +
Sbjct: 421 GIGSSPGTSFRISDAEILLYSGIENASNASPDPASGELSSWSSELDHLDPATDINLADDN 480

Query: 488 KKPAGSVNVAAQRLKSVFHWPKLKEKKPERF---KKSLD-----EGSDEPPTPLRKRFSK 539
           K   GSVN AA+RLK + HWP+ + K   +      SLD        ++ PTPLR RFSK
Sbjct: 481 K---GSVNNAARRLKILLHWPRKQGKADSKTLGEDDSLDSYKISRNLEDDPTPLRHRFSK 537

Query: 540 PSSLPNNKRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGRSRSSSFSKSSICS 599
            +SLPNNKR +S RS   SP+ KK+FA G+MHGV++AMPQL  P   S S  FS+S + S
Sbjct: 538 LTSLPNNKRVVSFRSLLPSPSTKKKFAVGLMHGVIRAMPQLADP-AESSSPPFSESPVSS 596

Query: 600 PTSLDKQKGIFTDNEDAGPSCSNQLFDDETPNNMTEKQS--HRRSKSQYFCFGGPGLSVK 657
           P S +KQKGI  +N   GPS SNQ         M  KQS  +++  +QYFCFG  G++V+
Sbjct: 597 PRSAEKQKGIAIENGTTGPSTSNQGVKG-GKREMNNKQSSFNKKMMNQYFCFGAQGIAVE 655

Query: 658 TPVSKQ 663
             +  Q
Sbjct: 656 NSIRSQ 661

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560523|ref|XP_003548541.1| PREDICTED: ankyrin-1-like [Glycine max]

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/658 (63%), Positives = 509/658 (77%), Gaps = 32/658 (4%)

Query: 8   MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLET 67
           MP TYFPLRWESTGDQWWYASPID AAANGHYDLVRELLRID NHL KLTSLRRIRRLE 
Sbjct: 1   MPTTYFPLRWESTGDQWWYASPIDCAAANGHYDLVRELLRIDNNHLFKLTSLRRIRRLEV 60

Query: 68  VWDDEEQ--FDDVAKCRSKVARKLFLEC---KSKNGKNSLIRAGYGGWLLYTAASAGDLG 122
           VWDDEEQ  F DVAKCRS+VA KL LEC   +  + KNSLIRAGYGGWL+YTAASAGDL 
Sbjct: 61  VWDDEEQQQFSDVAKCRSQVAHKLLLECDSKRRSSSKNSLIRAGYGGWLIYTAASAGDLS 120

Query: 123 FVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEH 182
           FV+QLL++NPLLVFGEGEY VTDIFYAA+R K+C+VFRL++DFAVSPRF+T KGG LEEH
Sbjct: 121 FVQQLLERNPLLVFGEGEYNVTDIFYAASRGKSCEVFRLVFDFAVSPRFVTGKGGVLEEH 180

Query: 183 IE-EIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQ 241
           +  ++P VYKWEM NRAVHAAARGG+++IL E L NC+DVL YRD QGST+LH+A+GRGQ
Sbjct: 181 VGGDVPPVYKWEMSNRAVHAAARGGSVEILVEFLANCSDVLAYRDAQGSTLLHSASGRGQ 240

Query: 242 VEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH 301
           VEVVK L +SFDIINSTDHQGNT LH+AAYRGQ A VEAL+ ASP++IS++N +GETFLH
Sbjct: 241 VEVVKYLTSSFDIINSTDHQGNTALHVAAYRGQLAAVEALVSASPALISLRNNAGETFLH 300

Query: 302 SAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELV 361
            AVSGFQ+ +FRRLDRQV+L++QL SG+ F++E++IN KN DGRTALH+A  G +H +LV
Sbjct: 301 KAVSGFQSTSFRRLDRQVELLRQLVSGKKFHIEEVINVKNTDGRTALHIATIGKIHTDLV 360

Query: 362 QLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIA 421
           +LLM+APSINVNV D +GMT LD LKQ P SA+S++LIR LI+AGG+F    +S+R+AIA
Sbjct: 361 KLLMTAPSINVNVSDANGMTPLDYLKQSPNSAASNVLIRKLIAAGGMF--HHHSSRKAIA 418

Query: 422 SHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELNQFDPTNDN 481
           SH+KM   G SPGTSFRISDT+IFLYTGI+ +SD + + GS GMSS+S+E   +D   +N
Sbjct: 419 SHMKMHSIGGSPGTSFRISDTQIFLYTGIENASDASTDQGSAGMSSTSSEHTAYDSAAEN 478

Query: 482 QSSSTDKKPAGSVNVAAQRLKSVFHWPKLKEKKPERFKKSLDEGS----------DEPPT 531
           +  +T K+P+      A  LK V  WP +K+KK E  +KS+DEGS          DE PT
Sbjct: 479 RPPTTSKRPS-----VAAGLKRVLQWPLVKDKKAEGIRKSIDEGSLDSCRKWDITDEIPT 533

Query: 532 PLRKRFSKPSSLPNNKRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGRSRSSS 591
           PLR++F + S+LPNNKR LSVRS QSSP AKKRFASG++H        + V    S SS 
Sbjct: 534 PLRQKFFRHSALPNNKRNLSVRSYQSSPNAKKRFASGLVH--------VKVSRRSSSSSF 585

Query: 592 FSKSSICSPTSLDKQKGIFTDNEDAGPSCSNQLFDDETPNNMTEKQSHRRSKSQYFCF 649
              S     ++ +KQKG   DN+ AGPSCSN   +D++ N+       ++ +  YFCF
Sbjct: 586 SISSFSSPRSTDNKQKGFCVDNDVAGPSCSNHQ-NDKSTNSGKRTSVSKKLRGHYFCF 642

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	677
TAIR|locus:2082344	664	AT3G01750 [Arabidopsis thalian	0.940	0.959	0.541	9.3e-178
TAIR|locus:2103060	656	AT3G04140 [Arabidopsis thalian	0.819	0.846	0.479	7.1e-126
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.336	0.512	0.298	1.8e-18
MGI|MGI:3045243	993	Ankrd44 "ankyrin repeat domain	0.209	0.143	0.383	7.4e-17
UNIPROTKB|Q8N8A2	993	ANKRD44 "Serine/threonine-prot	0.209	0.143	0.377	2.5e-16
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.252	0.386	0.315	8.6e-14
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.293	0.467	0.268	1.7e-13
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.288	0.359	0.327	3e-13
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.292	0.372	0.305	4.8e-13
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.351	0.552	0.272	4.9e-13

TAIR|locus:2082344 AT3G01750 [Arabidopsis thaliana (taxid:3702)]

 Score = 1726 (612.6 bits), Expect = 9.3e-178, P = 9.3e-178
 Identities = 367/678 (54%), Positives = 460/678 (67%)

Query:     8 MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLET 67
             MPPTYFPLRWESTGDQWWYA+PID+AAAN  YDLVRELLRID N+LIKLTSLRRIRRLET
Sbjct:     1 MPPTYFPLRWESTGDQWWYATPIDYAAANSQYDLVRELLRIDSNNLIKLTSLRRIRRLET 60

Query:    68 VWDDEEQFDDVAKCRSKVARKLFLECK---SKNGK-NSLIRAGYGGWLLYTAASAGDLGF 123
             VWDD+ QF DVA CRS+VARKL   C    S   K N+LIR+GYGGWL+YTAASAGDL F
Sbjct:    61 VWDDDSQFHDVAACRSRVARKLLAACDEGGSPGSKRNTLIRSGYGGWLIYTAASAGDLAF 120

Query:   124 VKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI 183
             V  LL++NPLLVFGEGEYGVTDI YAAARSKN DVFRLIYDFAV+PRF T  GG +E+  
Sbjct:   121 VHDLLERNPLLVFGEGEYGVTDILYAAARSKNDDVFRLIYDFAVTPRFGT--GG-IEQQT 177

Query:   184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCT--DVLTYRDKQGSTILHAAAGRGQ 241
              EIP+ YKWEM NRAVH+A+RGGNL +LKELL +C+   VL +RDKQGSTILH+AAG+G+
Sbjct:   178 GEIPAAYKWEMKNRAVHSASRGGNLILLKELLSDCSVEHVLAFRDKQGSTILHSAAGKGK 237

Query:   242 VEVVKDLIAS-FDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFL 300
              +VVK+L+AS + ++++ D+QGNT LH+AAYRG   +V+ LI ASPS+IS +N +G+TFL
Sbjct:   238 TQVVKELVASSYHLVDAVDNQGNTALHVAAYRGHADLVDVLISASPSLISARNNAGDTFL 297

Query:   301 HSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNME-DIINAKNNDGRTALHMAITGNVHLE 359
             H+ +SGFQT AF RLD+  +LM +L +      + D +N +NN+GRTALH+AI+GNV LE
Sbjct:   298 HAGISGFQTPAFERLDKHTELMNRLITSAASKSQGDFVNYRNNEGRTALHLAISGNVPLE 357

Query:   360 LVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRA 419
              V++LMS  SI++N+RDN GMT LDL++Q+P S +SD+L R L+SAGG+F C+D S    
Sbjct:   358 FVEMLMSVKSIDINIRDNAGMTPLDLIRQKPLSPTSDLLFRRLVSAGGMFSCRDQSITSV 417

Query:   420 IASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVXXXXXXXXXXXXXXXXXT--ELNQFDP 477
             +ASH+K  GN  SPG  F+ SD E+FL T ++V                    E+ Q + 
Sbjct:   418 VASHLKDRGNFYSPGARFKTSDAEMFLSTRLEVAPEKIGVVVPRHVRSSSCCIEIGQLNV 477

Query:   478 TNDNQSSSTDKKPAGSVNVAAQRLKSVFHWXXX------XXXXXXXXXXSLDEGSDEPPT 531
              ++N      +    SVN   +RLKSVFHW                   S    + E P 
Sbjct:   478 MDENHHLKKCRN--ASVNSTTERLKSVFHWPRVKKQPGHSKNNSDISIISTTLETQETPV 535

Query:   532 PLRKRFSKPS--SL--PNN-KRTLSVRSNQSSPTAKKRFASGIMHGVMQAMPQLTVPGGR 586
             PLR+RFSK S  SL  PNN KRTL+VRSNQSSP AKK+   G +     +  ++++    
Sbjct:   536 PLRQRFSKSSTSSLDPPNNNKRTLAVRSNQSSPRAKKK-RFGSVRSRSSSFSKISI---- 590

Query:   587 XXXXXXXXXXXXXXXXLD-KQKGIFTDNEDAGPSCSNQLFDDETPNNMTEKQSHRRS--K 643
                             +D KQKG+  D   AGPS   +   +   N ++EKQ   RS  K
Sbjct:   591 -----HSSSTSSTSSMVDLKQKGVLIDTSIAGPSGLKR--SEPVKNKVSEKQGSVRSRLK 643

Query:   644 SQYFCFGGPGLSVKTPVS 661
             S YFCFG   LSVKTP +
Sbjct:   644 SHYFCFGTSALSVKTPAT 661

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2103060 AT3G04140 [Arabidopsis thaliana (taxid:3702)]

 Score = 1202 (428.2 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
 Identities = 282/588 (47%), Positives = 368/588 (62%)

Query:     8 MPPTYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLET 67
             MPP  FPLRWESTGDQWWYASPID AAANG YD+V ELL  D N L+KLTSLRRIRRLET
Sbjct:     1 MPPPIFPLRWESTGDQWWYASPIDCAAANGLYDVVIELLHQDTNLLVKLTSLRRIRRLET 60

Query:    68 VWDDEEQFD-DVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQ 126
             VWDD +  +  VA  RS+VAR+L  EC+  NG NSLIRAGYGGWLLYTAASAGDL FVK+
Sbjct:    61 VWDDGDGNNFHVALNRSRVARRLLEECEIGNGDNSLIRAGYGGWLLYTAASAGDLEFVKK 120

Query:   127 LLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELE-EHIEE 185
             LL+++PLLVFGEGEYGVTDI YAAAR ++ DVFRL+ DFA+ P  + A   E++ E + E
Sbjct:   121 LLERDPLLVFGEGEYGVTDILYAAARGRSDDVFRLLLDFALLPADI-AGVEEIDGEKLTE 179

Query:   186 IPSVYKWEMMNRAVHAAARGGNLKILKELL-ENCTD-VLTYRDKQGSTILHAAAGRGQVE 243
                + K EM+ R VH+AARGG++ IL ELL  N  D V   RD  GST+LH+A+ R Q++
Sbjct:   180 KQLIVKEEMVKRGVHSAARGGHVAILDELLLANKYDAVAKLRDAYGSTLLHSASSRAQIQ 239

Query:   244 VVKDLIASFD-IINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHS 302
             VVK LI+ +D I+   D  GNT LHIAAY+G   VVEALI  SP +IS+ N  G+TFLH+
Sbjct:   240 VVKYLISKYDSIMEVKDSHGNTALHIAAYKGHLDVVEALINESPPLISIVNGDGDTFLHT 299

Query:   303 AVSGFQTYAFRRLDRQVKLMKQLASGQ-IFNMEDIINAKNNDGRTALHMAITGNVHL--- 358
              VSGF    F+RLDRQ++L+K L S     +  +I+N +N +GRT +H+A+  N++    
Sbjct:   300 VVSGFAASGFKRLDRQMELLKMLVSRSWSVDFSEIVNVRNCNGRTVIHLAVMDNLNAVRP 359

Query:   359 ELVQLLMSAPSINVNVRDNDGMTTLDLLK-QRPQSASSDILIRHLISAGGIFGCQDYSAR 417
             ++V++LM  P +++NV D+ GMT +DLLK Q PQ+  SD+LI+ L+SAGG   C +  +R
Sbjct:   360 DVVEILMRIPGVDLNVVDSYGMTAVDLLKRQTPQTVVSDLLIKRLVSAGGRSNCGEKVSR 419

Query:   418 RAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVXXXXXXXXXXXXXXXXXTELNQFDP 477
                  +    G   SPGTSF ISD+EIFL+T                      +   FD 
Sbjct:   420 LREERY----GFCGSPGTSFEISDSEIFLFTA-------ARTDKTAANAELSPDRESFDG 468

Query:   478 TNDNQ---SSSTDKKPAGSVNVAAQRLKSVFHWXXXXXXXXXXXXXSLDEGSDEPPTPLR 534
              ++     S+ + +K  G     A RLK +  W              L    +    PLR
Sbjct:   469 ISECSTEISTHSKRKRRGGGGTGA-RLKLLLRWAKREESEENRR---LSGDVNNRRVPLR 524

Query:   535 KRFSKPSSLPNNKR-TLSVRSNQ-SSPTAKKRFASGIMHGVM-QAMPQ 579
             + +S PSS    K   +   S    S + + +F  G+M GV+ Q  P+
Sbjct:   525 EMYS-PSSCSRGKAFPMRTESGDLPSLSVRLKFTQGLMKGVVVQESPR 571

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 72/241 (29%), Positives = 116/241 (48%)

Query:   167 VSPRFLTAKG-GELEE---HIEEIPSVYKW----EMMNRAVHAAARGGNLKILKELLENC 218
             + PR + A   G ++E   HI E P + +       +N  +H A+  GNL    EL+   
Sbjct:     1 MDPRLIVATQIGSIDELYAHIHENPYILEIIDAIPFINTPLHIASASGNLSFAMELMNLK 60

Query:   219 TDVLTYRDKQGSTILHAAAGRGQVEVVKDLI-ASFDIINSTDHQGNTPLHIAAYRGQPAV 277
                    +  G + LH A   GQ  +V  L+    D++     +G TP H    RG+  +
Sbjct:    61 PSFARKLNTYGLSPLHLAIEEGQTRLVLSLLKVDSDLVRLRGREGMTPFHQVVRRGETDL 120

Query:   278 VEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDII 337
             +   +LA P  I   N +GET LH AVS  +      L   V+ ++Q    +   M+  +
Sbjct:   121 MTEFLLACPGCIKDANVNGETALHIAVSNDRYEELEVLLGWVQRLRQ-TDAESLEMQ-FL 178

Query:   338 NAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLL-KQRPQSASSD 396
             N ++ DG TALH+A   N   + V++L+   ++N N+ +  G+T LD+L  QR   A+S+
Sbjct:   179 NKRDQDGNTALHIAAYQN-RFKAVKILVKCSAVNRNIHNRTGLTALDILHNQRDHHANSN 237

Query:   397 I 397
             I
Sbjct:   238 I 238

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:3045243 Ankrd44 "ankyrin repeat domain 44" [Mus musculus (taxid:10090)]

 Score = 191 (72.3 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
 Identities = 61/159 (38%), Positives = 86/159 (54%)

Query:   197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIIN 256
             RA+H AA  G+L ++  L+ +  +V T +DK+G T LHAAA  GQ+ VVK L+     I+
Sbjct:   175 RALHWAAYMGHLDVVALLINHGAEV-TCKDKKGYTPLHAAASNGQISVVKHLLNLGVEID 233

Query:   257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD 316
               +  GNT LHIA Y GQ AVV  LI    + ++  N SG T LH A +   T+    L+
Sbjct:   234 EINVYGNTALHIACYNGQDAVVNELIDYGAN-VNQPNNSGFTPLHFAAAS--THGALCLE 290

Query:   317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM-AITG 354
               V            N  D+ N ++ DG++ LHM A+ G
Sbjct:   291 LLVN-----------NGADV-NIQSKDGKSPLHMTAVHG 317

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8N8A2 ANKRD44 "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B" [Homo sapiens (taxid:9606)]

 Score = 188 (71.2 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
 Identities = 60/159 (37%), Positives = 86/159 (54%)

Query:   197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIIN 256
             RA+H AA  G+L ++  L+ +  +V T +DK+G T LHAAA  GQ+ VVK L+     I+
Sbjct:   175 RALHWAAYMGHLDVVALLINHGAEV-TCKDKKGYTPLHAAASNGQINVVKHLLNLGVEID 233

Query:   257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD 316
               +  GNT LHIA Y GQ AVV  LI    + ++  N +G T LH A +   T+    L+
Sbjct:   234 EINVYGNTALHIACYNGQDAVVNELIDYGAN-VNQPNNNGFTPLHFAAAS--THGALCLE 290

Query:   317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM-AITG 354
               V            N  D+ N ++ DG++ LHM A+ G
Sbjct:   291 LLVN-----------NGADV-NIQSKDGKSPLHMTAVHG 317

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 8.6e-14, P = 8.6e-14
 Identities = 59/187 (31%), Positives = 93/187 (49%)

Query:   226 DKQGSTILHAAAGRGQVEVVKDLIA-SFDIINSTDHQGNTPLHIAAYRGQPAVVEALILA 284
             DK G + LHAAA  GQVE V+  +     +    D  G TPLH+A  RG+  V+  ++ +
Sbjct:    44 DKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVATMRGKIDVIREIVAS 103

Query:   285 SPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDG 344
                 +  +   G+T LH AV   +  A   +   V+L+ +       N  D++N K+  G
Sbjct:   104 CVDCLEDETVQGQTALHLAVLHLEIEAVIAI---VELITET------NRFDVLNKKDEQG 154

Query:   345 RTALHMAITGNVHLELVQLLMSA-P----SINVNVRDNDGMTTLDLLKQRPQSASSDILI 399
              TALH+A T   + +++++L+ A P    S  VN  +  G++ +DLL   P  A    + 
Sbjct:   155 NTALHLA-TWRKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDLLVMFPSEAGDREIY 213

Query:   400 RHLISAG 406
               LI AG
Sbjct:   214 EKLIEAG 220

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 55/205 (26%), Positives = 102/205 (49%)

Query:   194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI-ASF 252
             +++  +H A+  G L +  EL+          ++ G + LH A    QVE+  +L+    
Sbjct:    36 IIHTPLHEASSAGKLDLAMELMILKPSFAKKLNEYGLSPLHLAVENDQVELALELVKVDP 95

Query:   253 DIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAF 312
              ++      G TPLH+ A +G   ++   +LA P  I   N +GET LH  +   +    
Sbjct:    96 SLVRIRGRGGMTPLHLVAKKGDVDLLTDFLLACPESIKDVNVNGETILHITIMNDKYEQL 155

Query:   313 RRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINV 372
             + L   ++ M+   S  +F   D++N ++  G T LH+A   N + ++V+ L+   S++ 
Sbjct:   156 KVLTGWMQKMRD--SDDVFI--DVLNRRDRGGNTVLHLAAYEN-NDKVVKQLVKCLSLDR 210

Query:   373 NVRDNDGMTTLDLLKQRPQSASSDI 397
             N+++  GMT LD+L+ R    + +I
Sbjct:   211 NIQNKSGMTALDVLRARGSHMNKEI 235

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 70/214 (32%), Positives = 110/214 (51%)

Query:   108 GGWLLYTAASAGDLGFVKQLLDKNPL-LVFGEGEYGVTDIFYAAARSKNCDVFRLI---- 162
             G   LY AA  GD+  VK++++   L LV  +   G  D F+ AA+  + DV +++    
Sbjct:    66 GETALYVAAEYGDVEIVKEMINCYDLALVEIKARNGF-DAFHIAAKQGDLDVLKVLAEAH 124

Query:   163 ------YDFAVSPRFLTA--KGG-ELEEHIEEIPSVYKWEMMNR---AVHAAARGGNLKI 210
                    D + +    TA  +G  E+   + E+ S       +    A+H+A+R G++K+
Sbjct:   125 SELAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASRNGHVKV 184

Query:   211 LKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI-ASFDIINSTDHQGNTPLHIA 269
             +K LL +   +    DK+G T LH A     VEVV++LI A    IN  D +GNT LHIA
Sbjct:   185 IKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKADRSSINIADTKGNTALHIA 244

Query:   270 AYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
             A +G+  +V+ L+  + +     N SGET L +A
Sbjct:   245 ARKGRSQIVKLLLANNMTDTKAVNRSGETALDTA 278

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 4.8e-13, P = 4.8e-13
 Identities = 67/219 (30%), Positives = 109/219 (49%)

Query:   195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVK---DLIAS 251
             MN A H AA+ G+L I+KELL    ++    D   ++ L+AAA +  +E+V    D+  S
Sbjct:    95 MN-AFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPS 153

Query:   252 FDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYA 311
               +I      G T LH A   G   +V+ALI    +++ VK+  G+T LH AV G     
Sbjct:   154 CAMI--VRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKG----- 206

Query:   312 FRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSIN 371
                  R +++++++          I+N ++  G TALH+A T     ++  LL++  +I 
Sbjct:   207 -----RSLEVVEEILQADY----TILNERDRKGNTALHIA-TRKARPQITSLLLTFTAIE 256

Query:   372 VNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFG 410
             VN  +N   T +DL  +   S S+  +   L+ AG   G
Sbjct:   257 VNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHG 295

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 4.9e-13, P = 4.9e-13
 Identities = 68/250 (27%), Positives = 118/250 (47%)

Query:   199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA-SFDIINS 257
             +H A+  G   +  EL+          +  G + LH A    QV++  +L+  + D++  
Sbjct:    41 LHEASSTGKTDLAMELMVLKPTFAKKLNSDGVSPLHLAVENHQVQLALELVKINPDLVLV 100

Query:   258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDR 317
                +G TPLH+   +G   ++   +LA P  I   N +GET LH AV   +    + L  
Sbjct:   101 AGRKGMTPLHLVVKKGDANLLTEFLLACPESIKDTNVNGETALHIAVMNDRYEELKVLTG 160

Query:   318 QV-KLMKQ-LASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVR 375
              + +L K   AS +I     ++N ++ DG T LH+A   N H    +LL    S+N +++
Sbjct:   161 WIHRLHKSDAASTEIH----VLNKRDRDGNTILHLAAYKNNHKAFKELLKCI-SLNRDIQ 215

Query:   376 DNDGMTTLDLLKQRPQ--SASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSP 433
             +  GMT LD+L+      +  ++ +IRH     G+   +  +A   + S I  +   S+ 
Sbjct:   216 NKGGMTALDILRTNGSHMNIKTEKIIRHSGGKSGVSLSKVKTASVFLRSPITFVEYCSTT 275

Query:   434 GTSF--RISD 441
              T +  R+SD
Sbjct:   276 MTRYKNRMSD 285

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	677
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-22
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-12
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	9e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
pfam03008	97	pfam03008, DUF234, Archaea bacterial proteins of u	0.002
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.003
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.004
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  107 bits (268), Expect = 2e-27
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 2/105 (1%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD 259
           H AA  G+L+++K LLEN  DV   +D  G T LH AA  G +E+VK L+     +N+ D
Sbjct: 12  HLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD 70

Query: 260 HQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAV 304
             GNTPLH+AA  G   VV+ L L   + ++ ++  G T LH A 
Sbjct: 71  KDGNTPLHLAARNGNLDVVKLL-LKHGADVNARDKDGRTPLHLAA 114

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  103 bits (259), Expect = 4e-26
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 17/142 (11%)

Query: 224 YRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL 283
            RD+ G T LH AA  G +EVVK L+ +   +N+ D+ G TPLH+AA  G   +V+ L+ 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 284 ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNND 343
                ++ ++  G T LH A         + L         L  G        +NA++ D
Sbjct: 62  KGAD-VNARDKDGNTPLHLAARNGNLDVVKLL---------LKHG------ADVNARDKD 105

Query: 344 GRTALHMAITGNVHLELVQLLM 365
           GRT LH+A     HLE+V+LL+
Sbjct: 106 GRTPLHLAAKNG-HLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 92.8 bits (231), Expect = 2e-22
 Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 18/130 (13%)

Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRL 315
           N+ D  G TPLH+AA  G   VV+ L+      ++ K+  G T LH A         + L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 316 DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVR 375
                    L  G        +NA++ DG T LH+A     +L++V+LL+     +VN R
Sbjct: 60  ---------LEKG------ADVNARDKDGNTPLHLAARNG-NLDVVKLLLKH-GADVNAR 102

Query: 376 DNDGMTTLDL 385
           D DG T L L
Sbjct: 103 DKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 91.7 bits (228), Expect = 6e-22
 Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 21/143 (14%)

Query: 140 EYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAV 199
           E G T   + AA + + +V +L+ +           G                      +
Sbjct: 5   EDGRT-PLHLAASNGHLEVVKLLLENGADVNAKDNDG-------------------RTPL 44

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD 259
           H AA+ G+L+I+K LLE   DV   RDK G+T LH AA  G ++VVK L+     +N+ D
Sbjct: 45  HLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD 103

Query: 260 HQGNTPLHIAAYRGQPAVVEALI 282
             G TPLH+AA  G   VV+ L+
Sbjct: 104 KDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 87.3 bits (217), Expect = 7e-21
 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD 259
           H AA+ GNL+++K LLE   DV         T LH AA  G +E+VK L+     +N+ D
Sbjct: 2   HLAAKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 260 HQGNTPLHIAAYRGQPAVVEALI 282
             GNT LH+AA  G   +V+ L+
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.9 bits (164), Expect = 9e-14
 Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 53/144 (36%)

Query: 233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVK 292
           LH AA  G +E+VK L+     +N  D   +T LH+AA  G   +V+ L+          
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLL---------- 48

Query: 293 NTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI 352
                                                       +NAK+ DG TALH+A 
Sbjct: 49  ---------------------------------------EHGADVNAKDKDGNTALHLAA 69

Query: 353 TGNVHLELVQLLMSAPSINVNVRD 376
               +LE+V+LL+     ++N++D
Sbjct: 70  RNG-NLEIVKLLLEH-GADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 68.3 bits (166), Expect = 9e-13
 Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 11/198 (5%)

Query: 208 LKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH 267
           L  L  LL       + +       L         E++  LI     + + D  G  PLH
Sbjct: 20  LVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDR-HLAARDLDGRLPLH 78

Query: 268 IAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLAS 327
            AA +G   +V+ L+ +    ++ K+  G+T LH A            +  +++ K L  
Sbjct: 79  SAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAA-----LNGNPPEGNIEVAKLLLE 132

Query: 328 GQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLK 387
                  D+ N ++ DG T LH A   N   ++V+LL+ A + + N R++ G+T LD   
Sbjct: 133 AGADL--DVNNLRDEDGNTPLHWAA-LNGDADIVELLLEAGA-DPNSRNSYGVTALDPAA 188

Query: 388 QRPQSASSDILIRHLISA 405
           +  +     +L+   +  
Sbjct: 189 KNGRIELVKLLLDKGLHL 206

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 63.0 bits (154), Expect = 2e-12
 Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDII 255
           + A+H AAR GNL+I+K LLE+  DV   +DK G+T LH AA  G +E+VK L+     I
Sbjct: 29  DTALHLAARNGNLEIVKLLLEHGADV-NAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Query: 256 NSTD 259
           N  D
Sbjct: 88  NLKD 91

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 26/54 (48%), Positives = 33/54 (61%)

Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
           G T LH AA  G++E+VK L+     IN TD  GNT LHIAA  G   V++ L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 66.5 bits (162), Expect = 1e-11
 Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 20/186 (10%)

Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H A + G+L+ +K L E   DV    D  G   +H A      +++K L+      N  
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK 186

Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQ 318
           D+ G +PLH AA  G  A ++ L++   + I  K  +G T LH+A+           +R 
Sbjct: 187 DNNGESPLHNAAEYGDYACIK-LLIDHGNHIMNKCKNGFTPLHNAII---------HNRS 236

Query: 319 VKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDND 378
              ++ L +    N +DI      DG T LH AI     ++++ +L+   + +++++DN 
Sbjct: 237 A--IELLINNASINDQDI------DGSTPLHHAINPPCDIDIIDILLYHKA-DISIKDNK 287

Query: 379 GMTTLD 384
           G   +D
Sbjct: 288 GENPID 293

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.8 bits (160), Expect = 3e-11
 Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 22/196 (11%)

Query: 207 NLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPL 266
              ++K +L+   DV   +D +  T LH A  +G +E +K L      +N  D  G  P+
Sbjct: 103 EKDMIKTILDCGIDVNI-KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPI 161

Query: 267 HIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLA 326
           HIA       +++ L+L   +  +VK+ +GE+ LH+A   +  YA       +KL+    
Sbjct: 162 HIAIKHNFFDIIK-LLLEKGAYANVKDNNGESPLHNAAE-YGDYA------CIKLL---- 209

Query: 327 SGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLL 386
              I +   I+N K  +G T LH AI  N     ++LL++  SI  N +D DG T L   
Sbjct: 210 ---IDHGNHIMN-KCKNGFTPLHNAIIHN--RSAIELLINNASI--NDQDIDGSTPLHHA 261

Query: 387 KQRPQSAS-SDILIRH 401
              P      DIL+ H
Sbjct: 262 INPPCDIDIIDILLYH 277

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 58.5 bits (142), Expect = 7e-09
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 24/170 (14%)

Query: 242 VEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEA--LILASPSMISVKNTSGETF 299
           VE V+ L+A+   +N     G TPLH+  +     V +   L+L + + ++     G T 
Sbjct: 27  VEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTP 86

Query: 300 LHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITG-NVHL 358
           LH  +    T         + ++K L    I    D +NAK+  GRT LH+ ++G N++ 
Sbjct: 87  LHLYLYNATT---------LDVIKLL----IKAGAD-VNAKDKVGRTPLHVYLSGFNINP 132

Query: 359 ELVQLLMSAPSINVNVRDNDGMTTLD-LLKQRPQSASSDI-LIRHLISAG 406
           ++++LL+     +VN  D  GMT L  LLK    S ++++ L+R LI AG
Sbjct: 133 KVIRLLLRK-GADVNALDLYGMTPLAVLLK----SRNANVELLRLLIDAG 177

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI 249
              A+H AA  G L+++K LLE   D+    D+ G+T LH AA  G +EV+K L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDI-NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 38/206 (18%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQV-----EVVKDLIASFDI 254
           + A    N+ ++K LL+N  D+ +      ST LH  +          E+VK L+     
Sbjct: 40  YLAKEARNIDVVKILLDNGADINSSTKNN-STPLHYLSNIKYNLTDVKEIVKLLLEYGAN 98

Query: 255 INSTDHQGNTPLHIAAYR--GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAF 312
           +N+ D+ G TPL  A  +     ++VE  +L + + +++KN+ GE  LH  +        
Sbjct: 99  VNAPDNNGITPLLYAISKKSNSYSIVE-YLLDNGANVNIKNSDGENLLHLYLES------ 151

Query: 313 RRLDRQVKLMKQLASGQIFNMEDI---------------INAKNNDGRTALHMAITGNVH 357
                 +K++K L    I    DI               IN K+  G T LH A+  N +
Sbjct: 152 --NKIDLKILKLL----IDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVY-NNN 204

Query: 358 LELVQLLMSAPSINVNVRDNDGMTTL 383
            E V+ L+     N N+ +  G T L
Sbjct: 205 PEFVKYLLDL-GANPNLVNKYGDTPL 229

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 200 HAAARGGNLK-----ILKELLEN--CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASF 252
           H AA  GN       + K LLE     DV   RD+ G+T LH AA  G  ++V+ L+ + 
Sbjct: 111 HLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG 170

Query: 253 DIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTS 295
              NS +  G T L  AA  G+  +V+ L+     +  +K   
Sbjct: 171 ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNL 213

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 21/56 (37%), Positives = 29/56 (51%)

Query: 214 LLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA 269
           LLE+    L   D  G+T LH AA  G +E+V+ L+     +N  D  G T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 54.6 bits (132), Expect = 9e-08
 Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 27/199 (13%)

Query: 196 NRAVHAAARGGNL--KILKELLENCTDVLTYRDKQGSTILHA--AAGRGQVEVVKDLI-A 250
              +H    G N+  K+++ LL    DV    D  G T L     +    VE+++ LI A
Sbjct: 118 RTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDA 176

Query: 251 SFDIINSTDHQGNTPLHIAA--YRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQ 308
             D+    D +  + LH     ++ +  +V  LI A     +  +  G T LHS      
Sbjct: 177 GADVYA-VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAAT-DMLGNTPLHSM----- 229

Query: 309 TYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMA-ITGNVHLELVQLLMSA 367
             A     ++  ++  L +G        INA+N  G+T LH A +  N       + + A
Sbjct: 230 --ATGSSCKRSLVLPLLIAGIS------INARNRYGQTPLHYAAVFNNPRACRRLIALGA 281

Query: 368 PSINVNVRDNDGMTTLDLL 386
              ++N   +DG T L L+
Sbjct: 282 ---DINAVSSDGNTPLSLM 297

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 23/174 (13%)

Query: 204 RGGNLKILKELLENCTDVLTYRDKQGSTILH--AAAGRGQVEVVKDLIASFDIINSTDHQ 261
           R  N+++L+ L++   DV    D +  ++LH    + + +  +V++LI +     +TD  
Sbjct: 163 RNANVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDML 221

Query: 262 GNTPLHIAAYRGQPA--VVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQV 319
           GNTPLH  A        +V  L++A  S I+ +N  G+T LH A       A RRL    
Sbjct: 222 GNTPLHSMATGSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRL---- 276

Query: 320 KLMKQLASGQIFNMEDIINAKNNDGRTAL-HMAITGNVHLELVQLLMSAPSINV 372
             +   A          INA ++DG T L  M    N    +   L   PS   
Sbjct: 277 --IALGAD---------INAVSSDGNTPLSLMVRNNNGRA-VRAALAKNPSAET 318

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 44/162 (27%), Positives = 64/162 (39%), Gaps = 22/162 (13%)

Query: 198 AVHAAARGG--NLKILKELLENCTDV---------LTY------RDKQGSTILHAAAGRG 240
            +H        +LKILK L++   D+         L+Y      +D  G T LH A    
Sbjct: 144 LLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNN 203

Query: 241 QVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFL 300
             E VK L+      N  +  G+TPLHIA       + + L+   PS I       ET L
Sbjct: 204 NPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS-IKTII---ETLL 259

Query: 301 HSAVSGFQT-YAFRRLDRQVKLMKQLASGQIFNMEDIINAKN 341
           +       T    + L + +  M  L  G   N + I N+K+
Sbjct: 260 YFKDKDLNTITKIKMLKKSIMYMFLLDPGFYKNRKLIENSKS 301

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
           +NA + +G T LH+A      LELVQ L+    +++N+RD+DG+T LDL
Sbjct: 9   LNATDGNGNTPLHLAAKYG-ALELVQWLLKPG-VDLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 61/302 (20%), Positives = 107/302 (35%), Gaps = 58/302 (19%)

Query: 146 IFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARG 205
             Y A  ++N DV +++ D        + K           P  Y   +           
Sbjct: 38  PLYLAKEARNIDVVKILLDNGADIN-SSTK-------NNSTPLHYLSNIKYNLTD----- 84

Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGR--GQVEVVKDLIASFDIINSTDHQGN 263
              +I+K LLE   +V    D  G T L  A  +      +V+ L+ +   +N  +  G 
Sbjct: 85  -VKEIVKLLLEYGANVNAP-DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGE 142

Query: 264 TPLHIAAYRGQP--AVVEALI---------------LASPSMISVKNTSGETFLHSAVSG 306
             LH+     +    +++ LI               L+    I++K+  G T LH AV  
Sbjct: 143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYN 202

Query: 307 FQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS 366
                 + L      +   A+          N  N  G T LH+AI  N + E+ +LL++
Sbjct: 203 NNPEFVKYL------LDLGAN---------PNLVNKYGDTPLHIAILNN-NKEIFKLLLN 246

Query: 367 -APSINVNVRDNDGMTTLDLLKQR-PQSASSDILIRHLISAGGIFGCQDYSARRAIASHI 424
             PSI   +       TL   K +   + +   +++  I    +     Y  R+ I +  
Sbjct: 247 NGPSIKTIIE------TLLYFKDKDLNTITKIKMLKKSIMYMFLLDPGFYKNRKLIENSK 300

Query: 425 KM 426
            +
Sbjct: 301 SL 302

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH 301
           +N+TD  GNTPLH+AA  G   +V+ L L     ++++++ G T L 
Sbjct: 9   LNATDGNGNTPLHLAAKYGALELVQWL-LKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 48.3 bits (115), Expect = 9e-06
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 19/195 (9%)

Query: 209 KILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHI 268
           +I K LL    D+      +G+T LH A       + + L++    +N  D   N+PLH 
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHH 207

Query: 269 AAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASG 328
           A       +V  L L + +    ++  G T LH +V   + Y        +KL+  L  G
Sbjct: 208 AVKHYNKPIVHIL-LENGASTDARDKCGNTPLHISVGYCKDYDI------LKLL--LEHG 258

Query: 329 QIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL-LK 387
              N +  I      G TALH +I      E    L+     ++N  ++  +T L   +K
Sbjct: 259 VDVNAKSYIL-----GLTALHSSI----KSERKLKLLLEYGADINSLNSYKLTPLSSAVK 309

Query: 388 QRPQSASSDILIRHL 402
           Q        ILI ++
Sbjct: 310 QYLCINIGRILISNI 324

Length = 477

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 23/198 (11%)

Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           M   +   A  GN  +L+ELL+   D     D +G T LH AA +G  + V  L+     
Sbjct: 525 MASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACN 583

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           ++  D  GNT L  A       +    IL   + IS  + +G+    +A         +R
Sbjct: 584 VHIRDANGNTALWNAISAKHHKIFR--ILYHFASISDPHAAGDLLCTAA---------KR 632

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLM--SAPSINV 372
            D  +  MK+L   Q  N    ++++++ G TAL +A+    H+++V+LL+   A     
Sbjct: 633 ND--LTAMKELLK-QGLN----VDSEDHQGATALQVAM-AEDHVDMVRLLIMNGADVDKA 684

Query: 373 NVRDNDGMTTL-DLLKQR 389
           N  D+   T L +LL++R
Sbjct: 685 NTDDDFSPTELRELLQKR 702

Length = 823

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 18/157 (11%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDII 255
              +H A +     I+K LLE        +D  G + LH AA  G    +K LI   + I
Sbjct: 158 CYPIHIAIKHNFFDIIKLLLEKGA-YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI 216

Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRL 315
            +    G TPLH A    + + +E LI  + + I+ ++  G T LH A+           
Sbjct: 217 MNKCKNGFTPLHNAIIHNR-SAIELLI--NNASINDQDIDGSTPLHHAI----------- 262

Query: 316 DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI 352
                    +    +++  D I+ K+N G   +  A 
Sbjct: 263 --NPPCDIDIIDILLYHKAD-ISIKDNKGENPIDTAF 296

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 318 QVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN 377
            ++L+K L           +N  + D  TALH+A     +LE+V+LL+     +VN +D 
Sbjct: 9   NLELVKLL-----LEKGADVNLGDTD--TALHLAARNG-NLEIVKLLLEH-GADVNAKDK 59

Query: 378 DGMTTL 383
           DG T L
Sbjct: 60  DGNTAL 65

Length = 91

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 9e-05
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN 377
           DG T LH+A     HLE+V+LL+ A   +VN RD 
Sbjct: 1   DGNTPLHLAARNG-HLEVVKLLLEA-GADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 261 QGNTPLHIAAYRGQPAVVEALI 282
            GNTPLH+AA  G   VV+ L+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLL 22

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSG 306
           G T LH AA  G+  +V+ L+      I+  +  G T LH A   
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAEN 44

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 17/124 (13%)

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N+ D+   TP+H AA R    ++  L+     + ++    G T LH A+ G   Y    
Sbjct: 368 VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIG-TALHFALCGTNPYM--- 423

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLM-SAPSIN-V 372
               VK +    +         +N+KN D  T LH A   N  L+++++L+ +   +N +
Sbjct: 424 ---SVKTLIDRGAN--------VNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI 472

Query: 373 NVRD 376
           N+++
Sbjct: 473 NIQN 476

Length = 682

>gnl|CDD|217316 pfam03008, DUF234, Archaea bacterial proteins of unknown function

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 40  DLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGK 99
           +L RELL      L KL  L R  ++   W   E+ D VA      A  LF E K KN K
Sbjct: 38  ELCRELLAE----LNKLGKLPRFTKIGRWWHKGEEIDIVALNEDGKA--LFGEVKWKNLK 91

Query: 100 N 100
            
Sbjct: 92  I 92

Length = 97

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD 259
             AA G  +   + LL    D    RD  G T LH A   G V+VV+ L+         D
Sbjct: 88  QLAASGDAVGA-RILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145

Query: 260 HQGNTPLHIAAYRGQPAVVEAL 281
             G TPL +A   G   VV+ L
Sbjct: 146 KDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 25/139 (17%)

Query: 28  SPIDWAAANGHYDLVRELLRIDGNHLIK----LTSLRRIRRLETVWDDEEQFDDVAKCRS 83
           +P+  AA+NGH ++V+ LL    +   K     T L                        
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLA---------------AKNGHL 53

Query: 84  KVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGV 143
           ++ + L      + G +   R   G   L+ AA  G+L  VK LL      V    + G 
Sbjct: 54  EIVKLLL-----EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGR 107

Query: 144 TDIFYAAARSKNCDVFRLI 162
           T +  AA       V  L+
Sbjct: 108 TPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 261 QGNTPLHIAAYRGQPAVVEALILASPSM 288
            G TPLH+AA  G   VV+ L+     +
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 344 GRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
           GRTALH A      LELV+ L+    +++N  D DG T L +
Sbjct: 1   GRTALHKAAISG-RLELVKYLLEKG-VDINRTDEDGNTALHI 40

Length = 54

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 262 GNTPLHIAAYRGQPAVVEALI 282
           GNTPLH+AA  G   +V+ L+
Sbjct: 2   GNTPLHLAARNGNLELVKLLL 22

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	677
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
PHA02743	166	Viral ankyrin protein; Provisional	99.83
PHA02743	166	Viral ankyrin protein; Provisional	99.81
PHA02884	300	ankyrin repeat protein; Provisional	99.8
PHA02741	169	hypothetical protein; Provisional	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.77
PHA02884	300	ankyrin repeat protein; Provisional	99.77
PHA02741	169	hypothetical protein; Provisional	99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.75
PHA02736	154	Viral ankyrin protein; Provisional	99.73
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.7
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.69
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.65
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.65
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.63
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.59
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.56
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.54
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.46
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.45
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.35
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.35
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.27
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.27
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.24
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.23
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.23
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.22
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.17
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.17
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.17
PF13606	30	Ank_3: Ankyrin repeat	98.64
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.58
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.54
PF13606	30	Ank_3: Ankyrin repeat	98.49
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.41
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.39
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.37
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.37
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.36
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.34
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.31
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.3
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.25
KOG0522	560	consensus Ankyrin repeat protein [General function	98.2
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.15
KOG0522	560	consensus Ankyrin repeat protein [General function	98.13
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.09
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.91
KOG0511	516	consensus Ankyrin repeat protein [General function	97.91
KOG2384	223	consensus Major histocompatibility complex protein	97.84
KOG0511	516	consensus Ankyrin repeat protein [General function	97.78
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.67
KOG2384	223	consensus Major histocompatibility complex protein	97.59
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.58
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.22
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.1
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.51
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.91
KOG2505	591	consensus Ankyrin repeat protein [General function	95.13
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.91
PLN03218	1060	maturation of RBCL 1; Provisional	93.79
KOG2505	591	consensus Ankyrin repeat protein [General function	93.69
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.66
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.24
PLN03218	1060	maturation of RBCL 1; Provisional	92.24
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.33
PLN03077	857	Protein ECB2; Provisional	90.27
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.96
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	86.3
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.22
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	83.61

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-49  Score=459.37  Aligned_cols=383  Identities=19%  Similarity=0.174  Sum_probs=316.1

Q ss_pred             ccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhh-----hHHhhhhc----------------------------------
Q 005790           25 WYASPIDWAAANGHYDLVRELLRIDGNHLIKLT-----SLRRIRRL----------------------------------   65 (677)
Q Consensus        25 ~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~-----~~~~~~~l----------------------------------   65 (677)
                      ++.||||+||..||.|+|++||+.+++......     +++-....                                  
T Consensus        40 ~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  119 (682)
T PHA02876         40 IPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDE  119 (682)
T ss_pred             ccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHH
Confidence            466999999999999999999999887432111     11100000                                  


Q ss_pred             --------------------cccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHH
Q 005790           66 --------------------ETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVK  125 (677)
Q Consensus        66 --------------------~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk  125 (677)
                                          .......++++.++..++..++++|++    .|++++.+|..|.||||+||..|+.++|+
T Consensus       120 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~----~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~  195 (682)
T PHA02876        120 ACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLE----GGADVNAKDIYCITPIHYAAERGNAKMVN  195 (682)
T ss_pred             HHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence                                000011234556667788888899988    99999999999999999999999999999


Q ss_pred             HHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhc
Q 005790          126 QLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARG  205 (677)
Q Consensus       126 ~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~  205 (677)
                      +|+++|+ +++..+..|.||||+| +..++.+++++|++.+.+++.                       +.++|+.|+..
T Consensus       196 ~LL~~Ga-d~n~~~~~g~t~L~~A-~~~~~~~ivk~Ll~~~~~~~~-----------------------~~~~L~~ai~~  250 (682)
T PHA02876        196 LLLSYGA-DVNIIALDDLSVLECA-VDSKNIDTIKAIIDNRSNINK-----------------------NDLSLLKAIRN  250 (682)
T ss_pred             HHHHCCC-CcCccCCCCCCHHHHH-HHcCCHHHHHHHHhcCCCCCC-----------------------CcHHHHHHHHc
Confidence            9999997 4566778899999988 477999999999998776542                       13689999999


Q ss_pred             CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCH-HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHH
Q 005790          206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQV-EVVKDLIASFDIINSTDHQGNTPLHIAAYRG-QPAVVEALIL  283 (677)
Q Consensus       206 g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~-eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g-~~~iv~~LL~  283 (677)
                      ++.+++++|++.|+++ +..+..|.||||+|+..++. +++++|++.|++++..|..|.||||+|+..| +.+++++|+.
T Consensus       251 ~~~~~~~~Ll~~g~~v-n~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~  329 (682)
T PHA02876        251 EDLETSLLLYDAGFSV-NSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIM  329 (682)
T ss_pred             CCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence            9999999999999998 67888999999999999986 6899999999999999999999999999999 5899999999


Q ss_pred             hCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHH
Q 005790          284 ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQL  363 (677)
Q Consensus       284 ~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~l  363 (677)
                      .| ++++..+..|.||||+|+..         .+..+++.+|++.+     +++|.+|..|.||||+|+..+ +.+++++
T Consensus       330 ~g-adin~~d~~g~TpLh~A~~~---------~~~~~iv~lLl~~g-----adin~~d~~G~TpLh~Aa~~~-~~~iv~~  393 (682)
T PHA02876        330 LG-ADVNAADRLYITPLHQASTL---------DRNKDIVITLLELG-----ANVNARDYCDKTPIHYAAVRN-NVVIINT  393 (682)
T ss_pred             cC-CCCCCcccCCCcHHHHHHHh---------CCcHHHHHHHHHcC-----CCCccCCCCCCCHHHHHHHcC-CHHHHHH
Confidence            88 67899999999999999874         23456677776655     568999999999999999988 9999999


Q ss_pred             HhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHH
Q 005790          364 LMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTE  443 (677)
Q Consensus       364 LL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~  443 (677)
                      |++ .|++++..+..|.||||+|+..++..   .++++|++.|+++|.+|..|+||||+|+....         ..++++
T Consensus       394 Ll~-~gad~~~~~~~g~T~Lh~A~~~~~~~---~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~---------~~~iv~  460 (682)
T PHA02876        394 LLD-YGADIEALSQKIGTALHFALCGTNPY---MSVKTLIDRGANVNSKNKDLSTPLHYACKKNC---------KLDVIE  460 (682)
T ss_pred             HHH-CCCCccccCCCCCchHHHHHHcCCHH---HHHHHHHhCCCCCCcCCCCCChHHHHHHHhCC---------cHHHHH
Confidence            999 89999999999999999998877643   36889999999999999999999999987432         267999


Q ss_pred             HHHHcCCCCCCCCCCCCCCCCCC
Q 005790          444 IFLYTGIDVSSDGNANSGSGGMS  466 (677)
Q Consensus       444 ~LL~~Gad~~~~~~~g~t~~~~~  466 (677)
                      +|+++|||++..+..|.|+....
T Consensus       461 lLl~~Gad~n~~d~~g~tpl~~a  483 (682)
T PHA02876        461 MLLDNGADVNAINIQNQYPLLIA  483 (682)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHH
Confidence            99999999999999998876544

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.5e-45  Score=424.76  Aligned_cols=354  Identities=21%  Similarity=0.221  Sum_probs=316.0

Q ss_pred             cCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhc
Q 005790           26 YASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRA  105 (677)
Q Consensus        26 g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d  105 (677)
                      ..++|+.|+..|+.+++++|++.|+++|..            ...+.||||.|+..|+.+++++|++    .|++++..+
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~------------d~~G~TpLh~Aa~~G~~~iv~~LL~----~Gad~n~~~  208 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLEGGADVNAK------------DIYCITPIHYAAERGNAKMVNLLLS----YGADVNIIA  208 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHhCCCCCCCC------------CCCCCCHHHHHHHCCCHHHHHHHHH----CCCCcCccC
Confidence            458899999999999999999999999753            5578999999999999999999999    999999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      ..|.||||+|+..|+.+++++|++.++..     ..+.++++.| +..++.+++++|++.|++++..+..          
T Consensus       209 ~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~-----~~~~~~L~~a-i~~~~~~~~~~Ll~~g~~vn~~d~~----------  272 (682)
T PHA02876        209 LDDLSVLECAVDSKNIDTIKAIIDNRSNI-----NKNDLSLLKA-IRNEDLETSLLLYDAGFSVNSIDDC----------  272 (682)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCC-----CCCcHHHHHH-HHcCCHHHHHHHHHCCCCCCCCCCC----------
Confidence            99999999999999999999999988643     2344677776 5889999999999999998866544          


Q ss_pred             chhhhhhhccchHHHHHHhcCCH-HHHHHHHhcCCCccccCCCCCCcHHHHHHHhC-CHHHHHHHHhcCCCCCCCCCCCC
Q 005790          186 IPSVYKWEMMNRAVHAAARGGNL-KILKELLENCTDVLTYRDKQGSTILHAAAGRG-QVEVVKDLIASFDIINSTDHQGN  263 (677)
Q Consensus       186 ~~~~~~~~~~~t~Lh~A~~~g~~-eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g-~~eivk~Ll~~ga~in~~d~~g~  263 (677)
                               |.||||+|+..++. +++++|++.|+++ +..|..|.||||+|+..| +.+++++|+..|++++..|..|.
T Consensus       273 ---------g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~  342 (682)
T PHA02876        273 ---------KNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYI  342 (682)
T ss_pred             ---------CCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCC
Confidence                     47999999999996 6999999999998 789999999999999999 59999999999999999999999


Q ss_pred             cHHHHHHHc-CCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCC
Q 005790          264 TPLHIAAYR-GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNN  342 (677)
Q Consensus       264 tpL~~A~~~-g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~  342 (677)
                      ||||+|+.. ++.+++++|++.| ++++.+|..|.||||+|+.          .++.+++++|++.+     ++++..+.
T Consensus       343 TpLh~A~~~~~~~~iv~lLl~~g-adin~~d~~G~TpLh~Aa~----------~~~~~iv~~Ll~~g-----ad~~~~~~  406 (682)
T PHA02876        343 TPLHQASTLDRNKDIVITLLELG-ANVNARDYCDKTPIHYAAV----------RNNVVIINTLLDYG-----ADIEALSQ  406 (682)
T ss_pred             cHHHHHHHhCCcHHHHHHHHHcC-CCCccCCCCCCCHHHHHHH----------cCCHHHHHHHHHCC-----CCccccCC
Confidence            999999985 4788999999988 7899999999999999999          45567777777655     56888999


Q ss_pred             CCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCC-CCchHHHHHHHHHHcCCCCCCCcccCCchHH
Q 005790          343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRP-QSASSDILIRHLISAGGIFGCQDYSARRAIA  421 (677)
Q Consensus       343 ~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~-~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~  421 (677)
                      .|.||||+|+..+....++++|++ .|+++|.+|..|+||||+|+..+ +.+    ++++|+++|+++|.+|..|.|||+
T Consensus       407 ~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~~G~TpLh~Aa~~~~~~~----iv~lLl~~Gad~n~~d~~g~tpl~  481 (682)
T PHA02876        407 KIGTALHFALCGTNPYMSVKTLID-RGANVNSKNKDLSTPLHYACKKNCKLD----VIEMLLDNGADVNAINIQNQYPLL  481 (682)
T ss_pred             CCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCCCCChHHHHHHHhCCcHH----HHHHHHHCCCCCCCCCCCCCCHHH
Confidence            999999999987756788999999 99999999999999999999877 444    799999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCccchhhHHHHHHcCCCCCC
Q 005790          422 SHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSS  454 (677)
Q Consensus       422 ~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~  454 (677)
                      .|+..            .+++++|+..|++...
T Consensus       482 ~a~~~------------~~~v~~Ll~~~a~~~~  502 (682)
T PHA02876        482 IALEY------------HGIVNILLHYGAELRD  502 (682)
T ss_pred             HHHHh------------CCHHHHHHHCCCCCCc
Confidence            99863            2379999999998863

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-44  Score=410.64  Aligned_cols=392  Identities=13%  Similarity=0.046  Sum_probs=300.4

Q ss_pred             ccccCcHHHHHHHc---CCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHH----HHHHHhhhh
Q 005790           23 QWWYASPIDWAAAN---GHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVA----RKLFLECKS   95 (677)
Q Consensus        23 ~~~g~TpL~~Aa~~---G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v----~~lLl~~~~   95 (677)
                      +..|+||||+||..   |+.++|++||+.|++++.            ....+.||||+|+..++.++    +++|++   
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~------------~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~---   93 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLH------------KNWRQLTPLEEYTNSRHVKVNKDIAMALLE---   93 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccc------------cCCCCCCHHHHHHHcCChhHHHHHHHHHHh---
Confidence            45688999998665   889999999999999864            36779999999999888554    456655   


Q ss_pred             cCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHH-HhcCCHHHHHHHHhcCCCcccccc
Q 005790           96 KNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAA-ARSKNCDVFRLIYDFAVSPRFLTA  174 (677)
Q Consensus        96 ~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA-~~~g~~evv~lLl~~Gad~~~~~~  174 (677)
                       .+..++..+  ..+++|+|+..|+.++|++|+++|+ +++..|..|.|||++++ +..|+.+++++|+++|++++..+.
T Consensus        94 -~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Ga-din~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~  169 (661)
T PHA02917         94 -ATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGF-DLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDE  169 (661)
T ss_pred             -ccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCC-CCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccc
Confidence             443344433  2377889999999999999999997 67788999999999654 467999999999999999986553


Q ss_pred             cCCcchhhhhcchhhhhhhccchHHHHHHh-----------cCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCH-
Q 005790          175 KGGELEEHIEEIPSVYKWEMMNRAVHAAAR-----------GGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQV-  242 (677)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~-----------~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~-  242 (677)
                      .+..     ......+....+.||||+|+.           .++.++|++|+++|+++ +..|..|.||||+|+.+|+. 
T Consensus       170 ~~~~-----g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv-n~~d~~G~TpLh~A~~~g~~~  243 (661)
T PHA02917        170 DDEY-----GYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP-SSIDKNYCTALQYYIKSSHID  243 (661)
T ss_pred             cccc-----ccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc-ccCCCCCCcHHHHHHHcCCCc
Confidence            3211     000012233456799999986           46899999999999999 88999999999999999985 


Q ss_pred             -HHHHHHHhcCCCCC----CCCCCCCcHHHHHHHc---------CCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCc
Q 005790          243 -EVVKDLIASFDIIN----STDHQGNTPLHIAAYR---------GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQ  308 (677)
Q Consensus       243 -eivk~Ll~~ga~in----~~d~~g~tpL~~A~~~---------g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~  308 (677)
                       ++|++|++ |++++    ..|..|.+|+|+|++-         .+.+++++||+.|+.       .+.++||+++..+.
T Consensus       244 ~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~-------~~~~~~~~~~~~~~  315 (661)
T PHA02917        244 IDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP-------HGIMCSIVPLWRND  315 (661)
T ss_pred             HHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC-------CceeEeeecccccc
Confidence             79999985 88775    3566788999999952         178999999999942       23344444444443


Q ss_pred             hHHHHHhh--------------------HHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCC
Q 005790          309 TYAFRRLD--------------------RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAP  368 (677)
Q Consensus       309 ~~~~~~L~--------------------~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~  368 (677)
                      .+.+..+.                    ...+++++|++.|     +++|.++..|.|+.    ... ..+++++||...
T Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~G-----Advn~~~~~g~~~~----~~~-~~~~i~~LL~~~  385 (661)
T PHA02917        316 KETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYG-----AVVNKEAIHGYFRN----INI-DSYTMKYLLKKE  385 (661)
T ss_pred             hHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCCCCccccchh----hcC-CHHHHHHHHHhc
Confidence            33222111                    1356889997776     66888889998865    234 778888888756


Q ss_pred             CCCccccCCCCCcHHHHHhhCCC--------------Cch-----HHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCC
Q 005790          369 SINVNVRDNDGMTTLDLLKQRPQ--------------SAS-----SDILIRHLISAGGIFGCQDYSARRAIASHIKMLGN  429 (677)
Q Consensus       369 Gadin~~d~~G~TpL~~A~~~~~--------------~~~-----~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~  429 (677)
                      |++++..+.+|+||||.|++.+.              .++     ...++++|+++|||+|.+|..|+||||+|+.... 
T Consensus       386 ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~-  464 (661)
T PHA02917        386 GGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNK-  464 (661)
T ss_pred             CCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCC-
Confidence            88888888889999999875433              222     2457899999999999999999999999986422 


Q ss_pred             CCCCCCccchhhHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 005790          430 GSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSS  467 (677)
Q Consensus       430 ~~~~~~~~~~~~v~~LL~~Gad~~~~~~~g~t~~~~~~  467 (677)
                               .+++++|+++|||++..+..|.|+.....
T Consensus       465 ---------~~~v~~Ll~~GAdin~~d~~G~T~L~~A~  493 (661)
T PHA02917        465 ---------QSLVSLLLESGSDVNIRSNNGYTCIAIAI  493 (661)
T ss_pred             ---------HHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence                     77999999999999999999988766553

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.4e-44  Score=395.08  Aligned_cols=345  Identities=14%  Similarity=0.152  Sum_probs=255.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHH--hhchHHHHHHHHhhhhcCCCCchhhc
Q 005790           28 SPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVA--KCRSKVARKLFLECKSKNGKNSLIRA  105 (677)
Q Consensus        28 TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~--~~~~~~v~~lLl~~~~~~g~~~~~~d  105 (677)
                      -+|+.++..|+.+.++.+++....                 ....++||.++  ...+.+++++|++    .|++++.+|
T Consensus        11 ~sl~~~~~~~n~~~~~~~l~~~~~-----------------~g~~~~Lh~~~~~~~~~~~iv~~Ll~----~Gadvn~~d   69 (446)
T PHA02946         11 LSLYAKYNSKNLDVFRNMLQAIEP-----------------SGNYHILHAYCGIKGLDERFVEELLH----RGYSPNETD   69 (446)
T ss_pred             HHHHHHHccCcHHHHHHHHhccCC-----------------CCCChHHHHHHHhcCCCHHHHHHHHH----CcCCCCccC
Confidence            567778888888888888864211                 12356666654  3445677888887    788888888


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhc-CCHHHHHHHHhcCCCcccccccCCcchhhhh
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARS-KNCDVFRLIYDFAVSPRFLTAKGGELEEHIE  184 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~-g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~  184 (677)
                      ..|.||||+|+..|+.++|++|+++|+ +++..|..|.||||+|+... +..+++++|+++|++++.....         
T Consensus        70 ~~G~TpLh~Aa~~g~~eiv~lLL~~GA-din~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~---------  139 (446)
T PHA02946         70 DDGNYPLHIASKINNNRIVAMLLTHGA-DPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDE---------  139 (446)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCcC-CCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCC---------
Confidence            888888888888888888888888876 45667888888888875432 2478888888888887743211         


Q ss_pred             cchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCC--HHHHHHHHhcCCCCCCCCCCC
Q 005790          185 EIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQ--VEVVKDLIASFDIINSTDHQG  262 (677)
Q Consensus       185 ~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~--~eivk~Ll~~ga~in~~d~~g  262 (677)
                               .|.|||| |+..|+.+++++|++.|+++ +..|..|+||||+|+..++  .+++++|+++|++++..|..|
T Consensus       140 ---------~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G  208 (446)
T PHA02946        140 ---------EGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDG  208 (446)
T ss_pred             ---------CCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCC
Confidence                     1357886 55567888888888888887 7778888888888776544  578888888888888888888


Q ss_pred             CcHHHHHHHcC--CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHccccc---------
Q 005790          263 NTPLHIAAYRG--QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIF---------  331 (677)
Q Consensus       263 ~tpL~~A~~~g--~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~---------  331 (677)
                      .||||+|+..+  +.+++++|+. + ++++.+|..|.||||+|+..++.         .+++++|++.+..         
T Consensus       209 ~TpLH~Aa~~~~~~~~iv~lLl~-g-adin~~d~~G~TpLh~A~~~~~~---------~~~~~~Ll~~g~~~~~~~~~~a  277 (446)
T PHA02946        209 NTPLHIVCSKTVKNVDIINLLLP-S-TDVNKQNKFGDSPLTLLIKTLSP---------AHLINKLLSTSNVITDQTVNIC  277 (446)
T ss_pred             CCHHHHHHHcCCCcHHHHHHHHc-C-CCCCCCCCCCCCHHHHHHHhCCh---------HHHHHHHHhCCCCCCCcHHHHH
Confidence            88888888775  6778887774 4 67888888888888888875432         2333444443311         


Q ss_pred             ------chhhhhhcc-CCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHH
Q 005790          332 ------NMEDIINAK-NNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLIS  404 (677)
Q Consensus       332 ------~~~~~in~~-d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~  404 (677)
                            +.-..++.. +..|.||||+|+..| +.++|++||+ .|+       .|.||||+|+..++.+    ++++|+.
T Consensus       278 ~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g-~~eivk~Ll~-~~~-------~~~t~L~~A~~~~~~~----~v~~Ll~  344 (446)
T PHA02946        278 IFYDRDDVLEIINDKGKQYDSTDFKMAVEVG-SIRCVKYLLD-NDI-------ICEDAMYYAVLSEYET----MVDYLLF  344 (446)
T ss_pred             HHcCchHHHHHHHHcCcccCCCHHHHHHHcC-CHHHHHHHHH-CCC-------ccccHHHHHHHhCHHH----HHHHHHH
Confidence                  000112222 246889999999988 9999999999 664       5789999999999866    7999999


Q ss_pred             cCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcC
Q 005790          405 AGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTG  449 (677)
Q Consensus       405 ~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~G  449 (677)
                      +|+++|.. ..|.|||++|+....          .++++.||.+.
T Consensus       345 ~ga~~n~~-~~G~t~l~~a~~~~~----------~~~~~~ll~~~  378 (446)
T PHA02946        345 NHFSVDSV-VNGHTCMSECVRLNN----------PVILSKLMLHN  378 (446)
T ss_pred             CCCCCCCc-cccccHHHHHHHcCC----------HHHHHHHHhcC
Confidence            99999996 689999999997544          77999999843

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.2e-44  Score=398.04  Aligned_cols=379  Identities=15%  Similarity=0.141  Sum_probs=300.0

Q ss_pred             ccccCcHHHHHHHcC---CHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhc--hHHHHHHHHhhhhcC
Q 005790           23 QWWYASPIDWAAANG---HYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCR--SKVARKLFLECKSKN   97 (677)
Q Consensus        23 ~~~g~TpL~~Aa~~G---~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~--~~~v~~lLl~~~~~~   97 (677)
                      ++.|+||||+|+..|   +.++|++||++||+++.            .+..|.||||.|+..+  +.+++++|++    .
T Consensus        38 d~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~------------kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~----~  101 (672)
T PHA02730         38 DRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLC------------RNNEGLTPLGVYSKRKYVKSQIVHLLIS----S  101 (672)
T ss_pred             CCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcc------------cCCCCCChHHHHHHcCCCcHHHHHHHHh----c
Confidence            456899999999997   59999999999999974            4778999999998866  7999999999    7


Q ss_pred             CC--CchhhcCCCChHHHHHHH--cCCHHHHHHHHHcCCCccccCC-----CCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 005790           98 GK--NSLIRAGYGGWLLYTAAS--AGDLGFVKQLLDKNPLLVFGEG-----EYGVTDIFYAAARSKNCDVFRLIYDFAVS  168 (677)
Q Consensus        98 g~--~~~~~d~~G~t~L~~Aa~--~g~~eivk~LL~~g~~~~~~~~-----~~g~tpL~~AA~~~g~~evv~lLl~~Gad  168 (677)
                      |+  +++..+..+.+|||.++.  .++.++|++|+..+..+++...     ..|.+|++++ ...++.+||++|+++|++
T Consensus       102 ~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~-~~~~~~eIvklLi~~g~~  180 (672)
T PHA02730        102 YSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVT-TPNPRPEVLLWLLKSECY  180 (672)
T ss_pred             CCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHh-cCCCchHHHHHHHHcCCc
Confidence            54  457778778899998888  9999999999975443433331     3789999988 488999999999999999


Q ss_pred             cccccccCCcchhhhhcchhhhhhhccchHHHHHH------hcCCHHHHHHHHhcCCCccccCCCCCCcHHHH--HHHhC
Q 005790          169 PRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAA------RGGNLKILKELLENCTDVLTYRDKQGSTILHA--AAGRG  240 (677)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~------~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~--A~~~g  240 (677)
                      ++-..-.+           ..+......|.||+++      ..++.|++++||++|+++ +.+|..|.||||+  |+..|
T Consensus       181 v~g~~~~~-----------~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~kd~~G~TpLh~~~~~~~~  248 (672)
T PHA02730        181 STGYVFRS-----------CMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGRDEGGSLPIQYYWSCSTI  248 (672)
T ss_pred             cccccccc-----------ccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCcc
Confidence            85111000           0012223346666444      456899999999999999 8899999999995  55667


Q ss_pred             CHHHHHHHHh--------------------------------cCCCCCC--------------------CCCCCCc----
Q 005790          241 QVEVVKDLIA--------------------------------SFDIINS--------------------TDHQGNT----  264 (677)
Q Consensus       241 ~~eivk~Ll~--------------------------------~ga~in~--------------------~d~~g~t----  264 (677)
                      +.|+|++|++                                +|+|+..                    .+..|.+    
T Consensus       249 ~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~  328 (672)
T PHA02730        249 DIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYII  328 (672)
T ss_pred             cHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHH
Confidence            8999999999                                7888765                    4555654    


Q ss_pred             -----------------HHHHHHHcC---CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHH
Q 005790          265 -----------------PLHIAAYRG---QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQ  324 (677)
Q Consensus       265 -----------------pL~~A~~~g---~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~  324 (677)
                                       .||.-...+   +.+++++|+++| ++++.. ..|.||||+|+..+..      .-..+++++
T Consensus       329 ~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~G-AdIN~k-~~G~TpLH~Aa~~nnn------~i~~eIvel  400 (672)
T PHA02730        329 DNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNG-ATMDKT-TDNNYPLHDYFVNNNN------IVDVNVVRF  400 (672)
T ss_pred             HHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCC-CCCCcC-CCCCcHHHHHHHHcCC------cchHHHHHH
Confidence                             677767655   699999999999 778875 7999999999874210      012799999


Q ss_pred             HHcccccchhhhhhccCCCCchHHHH---HHhCCC--------cHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCc
Q 005790          325 LASGQIFNMEDIINAKNNDGRTALHM---AITGNV--------HLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSA  393 (677)
Q Consensus       325 Ll~~~~~~~~~~in~~d~~G~TpLh~---A~~~~~--------~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~  393 (677)
                      |+++|.   ..++|.+|..|.||||.   |...+.        ..+++++|++ +|+|+|.+|..|.||||+|+..++.+
T Consensus       401 LIs~Ga---~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs-~GADINakD~~G~TPLh~Aa~~~~~e  476 (672)
T PHA02730        401 IVENNG---HMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK-YMDDIDMIDNENKTLLYYAVDVNNIQ  476 (672)
T ss_pred             HHHcCC---CccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh-cccchhccCCCCCCHHHHHHHhCCHH
Confidence            998762   12488899999999994   332221        2357999999 99999999999999999999999876


Q ss_pred             hHHHHHHHHHHcCCCCCCCcc-cCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCC
Q 005790          394 SSDILIRHLISAGGIFGCQDY-SARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSS  454 (677)
Q Consensus       394 ~~~~lv~~Ll~~Gadin~~d~-~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~  454 (677)
                          ++++|+++||++|..|. .|.||||.|.....        ...+++++||++|+++..
T Consensus       477 ----ive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~--------~~~eIv~~LLs~ga~i~~  526 (672)
T PHA02730        477 ----FARRLLEYGASVNTTSRSIINTAIQKSSYRRE--------NKTKLVDLLLSYHPTLET  526 (672)
T ss_pred             ----HHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhc--------CcHHHHHHHHHcCCCHHH
Confidence                79999999999999997 59999999876321        127799999999999863

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=5.7e-43  Score=395.31  Aligned_cols=371  Identities=16%  Similarity=0.095  Sum_probs=288.1

Q ss_pred             HHcCCHHHHHHHHHhc-CCchhhhhhHHhhhhccccccccccHHHHHhh--chHHHHHHHHhhhhcCCCCchhhcCCCCh
Q 005790           34 AANGHYDLVRELLRID-GNHLIKLTSLRRIRRLETVWDDEEQFDDVAKC--RSKVARKLFLECKSKNGKNSLIRAGYGGW  110 (677)
Q Consensus        34 a~~G~~diV~~LL~~g-a~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~--~~~~v~~lLl~~~~~~g~~~~~~d~~G~t  110 (677)
                      .+.++.++|++|+++| +++|..           ....+.+|||+|+..  ++.+++++|++    .|++++.+|..|.|
T Consensus       150 ~~~v~leiVk~LLe~G~ADIN~~-----------~d~~G~TpLH~A~~n~~~~~eIVklLLe----~GADVN~kD~~G~T  214 (764)
T PHA02716        150 TRGIDLDLIKYMVDVGIVNLNYV-----------CKKTGYGILHAYLGNMYVDIDILEWLCN----NGVNVNLQNNHLIT  214 (764)
T ss_pred             ccCCCHHHHHHHHHCCCCCcccc-----------cCCCCCcHHHHHHHhccCCHHHHHHHHH----cCCCCCCCCCCCCC
Confidence            3569999999999999 998742           145689999988643  46799999999    99999999999999


Q ss_pred             HHHHHHHcCC--HHHHHHHHHcCCCccccCCCCCCCHHHHHHH--hcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790          111 LLYTAASAGD--LGFVKQLLDKNPLLVFGEGEYGVTDIFYAAA--RSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI  186 (677)
Q Consensus       111 ~L~~Aa~~g~--~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~--~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~  186 (677)
                      |||+|+..|+  .++|++|+++|+ +++..+..|.||||+|+.  ..++.+++++|++.+...... .            
T Consensus       215 PLH~Aa~~g~~~~eIVklLLe~GA-DVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~-~------------  280 (764)
T PHA02716        215 PLHTYLITGNVCASVIKKIIELGG-DMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVK-N------------  280 (764)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccc-c------------
Confidence            9999999995  599999999998 677889999999999853  568999999999865321110 0            


Q ss_pred             hhhhhhhccchHH---HHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH--hCCHHHHHHHHhcCCCCCCCCCC
Q 005790          187 PSVYKWEMMNRAV---HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAG--RGQVEVVKDLIASFDIINSTDHQ  261 (677)
Q Consensus       187 ~~~~~~~~~~t~L---h~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~--~g~~eivk~Ll~~ga~in~~d~~  261 (677)
                              ...++   ..|+..|+.+++++|+++|+++ +.+|..|+||||+|+.  .++.+++++|+++|++++.+|..
T Consensus       281 --------~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~  351 (764)
T PHA02716        281 --------IPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNI  351 (764)
T ss_pred             --------chhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCC
Confidence                    01233   4588999999999999999998 7899999999999875  46899999999999999999999


Q ss_pred             CCcHHHHHHH--------------cCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHc
Q 005790          262 GNTPLHIAAY--------------RGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLAS  327 (677)
Q Consensus       262 g~tpL~~A~~--------------~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~  327 (677)
                      |+||||+|+.              .++.+++++|+++| ++++.++..|.||||.++....      -....+++++|++
T Consensus       352 G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G-ADIn~kn~~G~TPLh~y~~~a~------n~~~~dIvklLis  424 (764)
T PHA02716        352 GNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG-ADITAVNCLGYTPLTSYICTAQ------NYMYYDIIDCLIS  424 (764)
T ss_pred             CCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC-CCCCCcCCCCCChHHHHHHHHH------hcChHHHHHHHHh
Confidence            9999999875              36899999999999 7899999999999994332100      0245778888877


Q ss_pred             ccccch------hhhhhccCCCCchHHHHHHhCCC----------------cHHHHHHHhhCCCCCccccCCCCCcHHHH
Q 005790          328 GQIFNM------EDIINAKNNDGRTALHMAITGNV----------------HLELVQLLMSAPSINVNVRDNDGMTTLDL  385 (677)
Q Consensus       328 ~~~~~~------~~~in~~d~~G~TpLh~A~~~~~----------------~~eiv~lLL~~~Gadin~~d~~G~TpL~~  385 (677)
                      .+....      +..++..+..+....|.+...+.                ..+++.+++. .++++|..|..|+||||+
T Consensus       425 ~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii-~~~nvN~~D~~G~TPLh~  503 (764)
T PHA02716        425 DKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAII-ERYNNAVCETSGMTPLHV  503 (764)
T ss_pred             CcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHH-hhccccccCCCCCCHHHH
Confidence            652211      11122233333334444433220                1234445555 678899999999999999


Q ss_pred             HhhCCCCchH-HHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCC
Q 005790          386 LKQRPQSASS-DILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSD  455 (677)
Q Consensus       386 A~~~~~~~~~-~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~  455 (677)
                      |+..++.+.+ .+++++|++.|+|+|.+|..|+||||+|+.......     ...+++++||++|++++..
T Consensus       504 Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~-----~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        504 SIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSG-----HQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             HHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccc-----cHHHHHHHHHhcCCCcchH
Confidence            9999887643 346799999999999999999999999998543110     1258999999999999875

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.4e-42  Score=381.24  Aligned_cols=321  Identities=14%  Similarity=0.111  Sum_probs=265.7

Q ss_pred             HHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHH--cCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhc
Q 005790           76 DDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAAS--AGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARS  153 (677)
Q Consensus        76 ~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~--~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~  153 (677)
                      ..+...++.+.++.+++....         ..+.++||.++.  .++.++|++|+++|+ +++..|..|.||||+|| ..
T Consensus        14 ~~~~~~~n~~~~~~~l~~~~~---------~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Ga-dvn~~d~~G~TpLh~Aa-~~   82 (446)
T PHA02946         14 YAKYNSKNLDVFRNMLQAIEP---------SGNYHILHAYCGIKGLDERFVEELLHRGY-SPNETDDDGNYPLHIAS-KI   82 (446)
T ss_pred             HHHHccCcHHHHHHHHhccCC---------CCCChHHHHHHHhcCCCHHHHHHHHHCcC-CCCccCCCCCCHHHHHH-Hc
Confidence            345556666777777652211         124689998764  457899999999997 57788999999999995 77


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCC--HHHHHHHHhcCCCccccCCCCCCc
Q 005790          154 KNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGN--LKILKELLENCTDVLTYRDKQGST  231 (677)
Q Consensus       154 g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~--~eivk~LL~~ga~~~~~~d~~g~T  231 (677)
                      |+.+++++|+++|++++..+..+                   .||||+|+..++  .+++++|+++|++++...+..|.|
T Consensus        83 g~~eiv~lLL~~GAdin~~d~~g-------------------~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~t  143 (446)
T PHA02946         83 NNNRIVAMLLTHGADPNACDKQH-------------------KTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCG  143 (446)
T ss_pred             CCHHHHHHHHHCcCCCCCCCCCC-------------------CCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCc
Confidence            99999999999999999887664                   689999988764  899999999999996567999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC--HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCch
Q 005790          232 ILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ--PAVVEALILASPSMISVKNTSGETFLHSAVSGFQT  309 (677)
Q Consensus       232 pL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~--~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~  309 (677)
                      ||| |+..++.+++++|+++|++++..|..|+||||+|+..++  .+++++|++.| ++++.+|..|.||||+|+..+  
T Consensus       144 pL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G-adin~~d~~G~TpLH~Aa~~~--  219 (446)
T PHA02946        144 PLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLG-ISPSKPDHDGNTPLHIVCSKT--  219 (446)
T ss_pred             HHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcC--
Confidence            997 667799999999999999999999999999999987654  68999999999 789999999999999999853  


Q ss_pred             HHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCcc----------------
Q 005790          310 YAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN----------------  373 (677)
Q Consensus       310 ~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin----------------  373 (677)
                            ..+.+++++|+. +     +++|.+|..|.||||+|+..+...+++++|++ .|++++                
T Consensus       220 ------~~~~~iv~lLl~-g-----adin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~-~g~~~~~~~~~~a~~~~~~~~~  286 (446)
T PHA02946        220 ------VKNVDIINLLLP-S-----TDVNKQNKFGDSPLTLLIKTLSPAHLINKLLS-TSNVITDQTVNICIFYDRDDVL  286 (446)
T ss_pred             ------CCcHHHHHHHHc-C-----CCCCCCCCCCCCHHHHHHHhCChHHHHHHHHh-CCCCCCCcHHHHHHHcCchHHH
Confidence                  235677777775 2     45999999999999999998734689999999 787542                


Q ss_pred             ----cc-CCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHc
Q 005790          374 ----VR-DNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYT  448 (677)
Q Consensus       374 ----~~-d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~  448 (677)
                          .. +..|.||||+|+..|+.+    ++++|+++|+       .|+||||+|+....          .+++++|+++
T Consensus       287 e~l~~~g~~~~~TpLh~Aa~~g~~e----ivk~Ll~~~~-------~~~t~L~~A~~~~~----------~~~v~~Ll~~  345 (446)
T PHA02946        287 EIINDKGKQYDSTDFKMAVEVGSIR----CVKYLLDNDI-------ICEDAMYYAVLSEY----------ETMVDYLLFN  345 (446)
T ss_pred             HHHHHcCcccCCCHHHHHHHcCCHH----HHHHHHHCCC-------ccccHHHHHHHhCH----------HHHHHHHHHC
Confidence                11 135789999999999987    6889999885       46899999987533          7899999999


Q ss_pred             CCCCCCCCCCCCCCCCC
Q 005790          449 GIDVSSDGNANSGSGGM  465 (677)
Q Consensus       449 Gad~~~~~~~g~t~~~~  465 (677)
                      ||+++.+ ..|.|+...
T Consensus       346 ga~~n~~-~~G~t~l~~  361 (446)
T PHA02946        346 HFSVDSV-VNGHTCMSE  361 (446)
T ss_pred             CCCCCCc-cccccHHHH
Confidence            9999996 568876543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.3e-41  Score=384.40  Aligned_cols=365  Identities=15%  Similarity=0.060  Sum_probs=278.9

Q ss_pred             ccCcHHHHHHH--cCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhch--HHHHHHHHhhhhcCCCC
Q 005790           25 WYASPIDWAAA--NGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRS--KVARKLFLECKSKNGKN  100 (677)
Q Consensus        25 ~g~TpL~~Aa~--~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~--~~v~~lLl~~~~~~g~~  100 (677)
                      .|.||||+|+.  .++.++|++|+++|+++|..            ...+.||||.|+..++  .+++++|++    .|++
T Consensus       176 ~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~k------------D~~G~TPLH~Aa~~g~~~~eIVklLLe----~GAD  239 (764)
T PHA02716        176 TGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQ------------NNHLITPLHTYLITGNVCASVIKKIIE----LGGD  239 (764)
T ss_pred             CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCC------------CCCCCCHHHHHHHcCCCCHHHHHHHHH----cCCC
Confidence            48899999875  46899999999999999753            5679999999999885  589999999    9999


Q ss_pred             chhhcCCCChHHHHHH---HcCCHHHHHHHHHcCCCccccCCCCCCCHHH--HHHHhcCCHHHHHHHHhcCCCccccccc
Q 005790          101 SLIRAGYGGWLLYTAA---SAGDLGFVKQLLDKNPLLVFGEGEYGVTDIF--YAAARSKNCDVFRLIYDFAVSPRFLTAK  175 (677)
Q Consensus       101 ~~~~d~~G~t~L~~Aa---~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~--~AA~~~g~~evv~lLl~~Gad~~~~~~~  175 (677)
                      ++.+|..|.||||+|+   ..++.++++.|++.+.....   ....++++  ..|+..|+.+++++|+++|++++..+..
T Consensus       240 VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~---~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~  316 (764)
T PHA02716        240 MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKV---KNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSA  316 (764)
T ss_pred             CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccc---ccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCC
Confidence            9999999999999986   56899999999987532111   11112232  2346889999999999999998876554


Q ss_pred             CCcchhhhhcchhhhhhhccchHHHHHHh--cCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH--------------h
Q 005790          176 GGELEEHIEEIPSVYKWEMMNRAVHAAAR--GGNLKILKELLENCTDVLTYRDKQGSTILHAAAG--------------R  239 (677)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~--~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~--------------~  239 (677)
                                         |+||||+|+.  .++.+++++|+++|+++ +.+|..|+||||+|+.              .
T Consensus       317 -------------------G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~  376 (764)
T PHA02716        317 -------------------GRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDND  376 (764)
T ss_pred             -------------------CCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhcccccccccc
Confidence                               4799999874  46899999999999999 7899999999999875              3


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCcHHHH----HHHcCCHHHHHHHHHhCCCCcccc--------CCCCCch--hhhhhh
Q 005790          240 GQVEVVKDLIASFDIINSTDHQGNTPLHI----AAYRGQPAVVEALILASPSMISVK--------NTSGETF--LHSAVS  305 (677)
Q Consensus       240 g~~eivk~Ll~~ga~in~~d~~g~tpL~~----A~~~g~~~iv~~LL~~g~~~~~~~--------~~~g~tp--Lh~A~~  305 (677)
                      ++.+++++|+++|++++.+|..|.||||.    |...++.+++++|++.+.. ....        +..+.+|  +|.++.
T Consensus       377 ~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~-~~~~~~~~q~ll~~~d~~~~~lhh~~a  455 (764)
T PHA02716        377 IRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVL-NMVKHRILQDLLIRVDDTPCIIHHIIA  455 (764)
T ss_pred             ChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcch-hhhhhhhhhhhhhccCcchhhHHHHHH
Confidence            68999999999999999999999999994    2345789999999997732 1111        1223333  455554


Q ss_pred             cCchHHHHHhhH--------HHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcH-----HHHHHHhhCCCCCc
Q 005790          306 GFQTYAFRRLDR--------QVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHL-----ELVQLLMSAPSINV  372 (677)
Q Consensus       306 ~~~~~~~~~L~~--------~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~-----eiv~lLL~~~Gadi  372 (677)
                      .+.......+..        ...+...++..     +.++|..|..|+||||+|+..+ +.     +++++|++ .|+|+
T Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~-----~~nvN~~D~~G~TPLh~Aa~~g-~~~~v~~e~~k~LL~-~GADI  528 (764)
T PHA02716        456 KYNIPTDLYTDEYEPYDSTKIHDVYHCAIIE-----RYNNAVCETSGMTPLHVSIISH-TNANIVMDSFVYLLS-IQYNI  528 (764)
T ss_pred             hcCcchhhhhhhhhhccccccchhhHHHHHh-----hccccccCCCCCCHHHHHHHcC-CccchhHHHHHHHHh-CCCCC
Confidence            433332222211        11222222211     2337888999999999999877 55     56699999 99999


Q ss_pred             cccCCCCCcHHHHHhhCCCCch-HHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCC
Q 005790          373 NVRDNDGMTTLDLLKQRPQSAS-SDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGID  451 (677)
Q Consensus       373 n~~d~~G~TpL~~A~~~~~~~~-~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad  451 (677)
                      |.+|.+|+||||+|+++|+.+. ...++++|+++|++++..      .|+.+....          ..+.+.+|..+|+.
T Consensus       529 N~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~------~l~~~~~~~----------~~~~~~ll~~~~~~  592 (764)
T PHA02716        529 NIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV------IIFLDKCYA----------NGKFPSLLLSEDDI  592 (764)
T ss_pred             cccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcchH------HHHHHhhhh----------hhHHHHHHHHcchh
Confidence            9999999999999999998733 345899999999999875      455544321          15688888888886


Q ss_pred             C
Q 005790          452 V  452 (677)
Q Consensus       452 ~  452 (677)
                      +
T Consensus       593 ~  593 (764)
T PHA02716        593 I  593 (764)
T ss_pred             H
Confidence            5

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-41  Score=386.34  Aligned_cols=363  Identities=15%  Similarity=0.140  Sum_probs=283.9

Q ss_pred             CCccccCcHHHHHHHcCCHH----HHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhc
Q 005790           21 GDQWWYASPIDWAAANGHYD----LVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSK   96 (677)
Q Consensus        21 ~~~~~g~TpL~~Aa~~G~~d----iV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~   96 (677)
                      ..++.|.||||+|+..|+.+    +|+.|++.+..++..              +...++++|+.+++.+++++|++    
T Consensus        63 ~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~--------------~~~~~~~~a~~~~~~e~vk~Ll~----  124 (661)
T PHA02917         63 HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIN--------------DFNIFSYMKSKNVDVDLIKVLVE----  124 (661)
T ss_pred             ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCC--------------CcchHHHHHhhcCCHHHHHHHHH----
Confidence            34567889999999999954    568888875433322              12356788999999999999999    


Q ss_pred             CCCCchhhcCCCChHHHHHH--HcCCHHHHHHHHHcCCCccc--cCCCCC-----------CCHHHHHHHh---------
Q 005790           97 NGKNSLIRAGYGGWLLYTAA--SAGDLGFVKQLLDKNPLLVF--GEGEYG-----------VTDIFYAAAR---------  152 (677)
Q Consensus        97 ~g~~~~~~d~~G~t~L~~Aa--~~g~~eivk~LL~~g~~~~~--~~~~~g-----------~tpL~~AA~~---------  152 (677)
                      +|++++.+|..|.||||+|+  ..|+.++|++|+++|++...  ..+.+|           .||||+|+..         
T Consensus       125 ~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~  204 (661)
T PHA02917        125 HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTR  204 (661)
T ss_pred             cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhccccccccc
Confidence            99999999999999999654  57899999999999985532  223344           5999999752         


Q ss_pred             -cCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCH--HHHHHHHhcCCCccc---cCC
Q 005790          153 -SKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNL--KILKELLENCTDVLT---YRD  226 (677)
Q Consensus       153 -~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~--eivk~LL~~ga~~~~---~~d  226 (677)
                       .++.+++++|+++|++++..+..|                   .||||+|+..|+.  ++|++|++ |+++.+   ..|
T Consensus       205 ~~~~~eiv~~Li~~Gadvn~~d~~G-------------------~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~  264 (661)
T PHA02917        205 AYVRPEVVKCLINHGIKPSSIDKNY-------------------CTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDD  264 (661)
T ss_pred             ccCcHHHHHHHHHCCCCcccCCCCC-------------------CcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccC
Confidence             468999999999999999876654                   7999999999985  89999985 887632   456


Q ss_pred             CCCCcHHHHHHH-------h--CCHHHHHHHHhcCCCCCC-------CCC------------CCCcHHHHHH---HcCC-
Q 005790          227 KQGSTILHAAAG-------R--GQVEVVKDLIASFDIINS-------TDH------------QGNTPLHIAA---YRGQ-  274 (677)
Q Consensus       227 ~~g~TpL~~A~~-------~--g~~eivk~Ll~~ga~in~-------~d~------------~g~tpL~~A~---~~g~-  274 (677)
                      ..|.+|+++|+.       .  .+.++|++||+.|++...       .+.            .+.++||.+.   ..|. 
T Consensus       265 ~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  344 (661)
T PHA02917        265 LTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDI  344 (661)
T ss_pred             cccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCC
Confidence            678899999984       1  178999999999987421       111            2334544433   4665 


Q ss_pred             -HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790          275 -PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT  353 (677)
Q Consensus       275 -~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~  353 (677)
                       .+++++||++| ++++.++..|.++..              ....+++++|+...    |++++..+.+|.||||.|++
T Consensus       345 ~~~~v~~Ll~~G-Advn~~~~~g~~~~~--------------~~~~~~i~~LL~~~----ga~~~~~~~~G~TpL~~a~~  405 (661)
T PHA02917        345 DIPLVECMLEYG-AVVNKEAIHGYFRNI--------------NIDSYTMKYLLKKE----GGDAVNHLDDGEIPIGHLCK  405 (661)
T ss_pred             cHHHHHHHHHcC-CCCCCCCccccchhh--------------cCCHHHHHHHHHhc----CCCccccCCCCCChhHHHHH
Confidence             56999999999 778888888887541              23345667776531    13355567789999999975


Q ss_pred             CCC----------------------cHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCC
Q 005790          354 GNV----------------------HLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGC  411 (677)
Q Consensus       354 ~~~----------------------~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~  411 (677)
                      .+.                      ..+++++|++ +|+|+|.+|..|+||||+|+..++.+    ++++|+++|+++|.
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~-~GAdIN~kd~~G~TpLh~Aa~~~~~~----~v~~Ll~~GAdin~  480 (661)
T PHA02917        406 SNYGCYNFYTYTYKKGLCDMSYACPILSTINICLP-YLKDINMIDKRGETLLHKAVRYNKQS----LVSLLLESGSDVNI  480 (661)
T ss_pred             hcccchhhhhhhhhhccchhhhhhhhHHHHHHHHH-CCCCCCCCCCCCcCHHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence            331                      3578899999 99999999999999999999999876    78999999999999


Q ss_pred             CcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCC
Q 005790          412 QDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSS  454 (677)
Q Consensus       412 ~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~  454 (677)
                      +|..|+|||+.|+....         ..+++++|+++|++++.
T Consensus       481 ~d~~G~T~L~~A~~~~~---------~~~iv~~LL~~ga~i~~  514 (661)
T PHA02917        481 RSNNGYTCIAIAINESR---------NIELLKMLLCHKPTLDC  514 (661)
T ss_pred             CCCCCCCHHHHHHHhCC---------CHHHHHHHHHcCCChhH
Confidence            99999999999985222         27899999999999974

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.7e-41  Score=372.78  Aligned_cols=383  Identities=14%  Similarity=0.076  Sum_probs=288.8

Q ss_pred             CHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhc---hHHHHHHHHhhhhcCCCCchhhcCCCChHHHH
Q 005790           38 HYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCR---SKVARKLFLECKSKNGKNSLIRAGYGGWLLYT  114 (677)
Q Consensus        38 ~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~---~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~  114 (677)
                      ..+.+++.++..+++|.           ..+..|.|+||+|+..+   +.+++++|++    +|++++.+|..|.||||+
T Consensus        19 ~~~~~~~~~~~~~~in~-----------~kd~~G~TaLh~A~~~~~~~~~eivklLLs----~GAdin~kD~~G~TPLh~   83 (672)
T PHA02730         19 TYKKIKLEIETCHNLSK-----------HIDRRGNNALHCYVSNKCDTDIKIVRLLLS----RGVERLCRNNEGLTPLGV   83 (672)
T ss_pred             hHHHHHHHHHHhcchhh-----------hcCCCCCcHHHHHHHcCCcCcHHHHHHHHh----CCCCCcccCCCCCChHHH
Confidence            35677888888777762           24567999999999987   5899999999    999999999999999999


Q ss_pred             HHHcC--CHHHHHHHHHcCCCc-cccCCCCCCCHHHHHHH-hcCCHHHHHHHHh-cCCCcccccccCCcchhhhhcchhh
Q 005790          115 AASAG--DLGFVKQLLDKNPLL-VFGEGEYGVTDIFYAAA-RSKNCDVFRLIYD-FAVSPRFLTAKGGELEEHIEEIPSV  189 (677)
Q Consensus       115 Aa~~g--~~eivk~LL~~g~~~-~~~~~~~g~tpL~~AA~-~~g~~evv~lLl~-~Gad~~~~~~~~~~~~~~~~~~~~~  189 (677)
                      |+..+  +.++|++|++.|+.. ++..+..+.+||+.+++ .+++.++|++|+. .+++|+......             
T Consensus        84 Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~-------------  150 (672)
T PHA02730         84 YSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYY-------------  150 (672)
T ss_pred             HHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhh-------------
Confidence            99977  799999999997533 45567778999988864 3789999999996 778887542210             


Q ss_pred             hhhhccchHHHHHHhcCCHHHHHHHHhcCCCcccc------CCCCCC-cHHHHH------HHhCCHHHHHHHHhcCCCCC
Q 005790          190 YKWEMMNRAVHAAARGGNLKILKELLENCTDVLTY------RDKQGS-TILHAA------AGRGQVEVVKDLIASFDIIN  256 (677)
Q Consensus       190 ~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~------~d~~g~-TpL~~A------~~~g~~eivk~Ll~~ga~in  256 (677)
                       ....+.+|+++|...++.|+|++|+++|+++...      .+..+. |.||++      ..+++.|++++|+++||++|
T Consensus       151 -~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN  229 (672)
T PHA02730        151 -IHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIH  229 (672)
T ss_pred             -ccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCC
Confidence             0012468999999999999999999999998411      333444 455544      35578999999999999999


Q ss_pred             CCCCCCCcHHHH--HHHcCCHHHHHHHHH--------------------------------hCCCCccccC--CCCCchh
Q 005790          257 STDHQGNTPLHI--AAYRGQPAVVEALIL--------------------------------ASPSMISVKN--TSGETFL  300 (677)
Q Consensus       257 ~~d~~g~tpL~~--A~~~g~~~iv~~LL~--------------------------------~g~~~~~~~~--~~g~tpL  300 (677)
                      .+|..|.||||+  |...|+.|+|++|++                                .| ++....+  -.|.-++
T Consensus       230 ~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~  308 (672)
T PHA02730        230 GRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYN-VDMEIVNLLIEGRHTL  308 (672)
T ss_pred             CCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCC-cchHHHHHHhhccCcc
Confidence            999999999995  556678999999998                                33 3332200  0111121


Q ss_pred             hhhhh-------cC-c---------------hHHHH-----Hh----hHHHHHHHHHHcccccchhhhhhccCCCCchHH
Q 005790          301 HSAVS-------GF-Q---------------TYAFR-----RL----DRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL  348 (677)
Q Consensus       301 h~A~~-------~~-~---------------~~~~~-----~L----~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpL  348 (677)
                      |....       .+ +               ...++     .+    .-..+++++|+++|     +++|.. ..|.|||
T Consensus       309 ~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~G-----AdIN~k-~~G~TpL  382 (672)
T PHA02730        309 IDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNG-----ATMDKT-TDNNYPL  382 (672)
T ss_pred             hhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCC-----CCCCcC-CCCCcHH
Confidence            11111       00 1               01111     11    14588999998887     557875 7899999


Q ss_pred             HHHHhCCCc---HHHHHHHhhCCCC--CccccCCCCCcHHHH---HhhCCC----Cch-HHHHHHHHHHcCCCCCCCccc
Q 005790          349 HMAITGNVH---LELVQLLMSAPSI--NVNVRDNDGMTTLDL---LKQRPQ----SAS-SDILIRHLISAGGIFGCQDYS  415 (677)
Q Consensus       349 h~A~~~~~~---~eiv~lLL~~~Ga--din~~d~~G~TpL~~---A~~~~~----~~~-~~~lv~~Ll~~Gadin~~d~~  415 (677)
                      |+|+..+.+   .+++++|++ +|+  |+|.+|..|.||||.   |...+.    .+. ...++++|+++|||+|.+|..
T Consensus       383 H~Aa~~nnn~i~~eIvelLIs-~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~  461 (672)
T PHA02730        383 HDYFVNNNNIVDVNVVRFIVE-NNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNE  461 (672)
T ss_pred             HHHHHHcCCcchHHHHHHHHH-cCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCC
Confidence            999887622   899999999 887  699999999999994   332321    122 224699999999999999999


Q ss_pred             CCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCCCC-CCCCCCCCCC
Q 005790          416 ARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGN-ANSGSGGMSS  467 (677)
Q Consensus       416 G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~~-~g~t~~~~~~  467 (677)
                      |+||||+|+....          .+++++|+++||+++..+. .|.|+....+
T Consensus       462 G~TPLh~Aa~~~~----------~eive~LI~~GAdIN~~d~~~g~TaL~~Aa  504 (672)
T PHA02730        462 NKTLLYYAVDVNN----------IQFARRLLEYGASVNTTSRSIINTAIQKSS  504 (672)
T ss_pred             CCCHHHHHHHhCC----------HHHHHHHHHCCCCCCCCCCcCCcCHHHHHH
Confidence            9999999988533          7899999999999999996 5777665443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.7e-41  Score=369.63  Aligned_cols=322  Identities=22%  Similarity=0.300  Sum_probs=279.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCC-chhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcC
Q 005790           28 SPIDWAAANGHYDLVRELLRIDGN-HLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAG  106 (677)
Q Consensus        28 TpL~~Aa~~G~~diV~~LL~~ga~-~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~  106 (677)
                      .-|..|+..|++++|+.|++.+.. ++.            ....+.|||+.|+..++.+++++|++    .|++++..+.
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~------------~~~~~~tpL~~A~~~g~~~iv~~Ll~----~Ga~~n~~~~   66 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINI------------SVDETTTPLIDAIRSGDAKIVELFIK----HGADINHINT   66 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCC------------cCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCC
Confidence            358899999999999999986544 332            24467899999999999999999999    9999999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790          107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI  186 (677)
Q Consensus       107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~  186 (677)
                      .|.||||+|+..|+.++|++|+++|+...         .+.   ......+++++|++.|++++..+..           
T Consensus        67 ~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~---------~~~---~~~~~~~~i~~ll~~g~d~n~~~~~-----------  123 (434)
T PHA02874         67 KIPHPLLTAIKIGAHDIIKLLIDNGVDTS---------ILP---IPCIEKDMIKTILDCGIDVNIKDAE-----------  123 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCC---------cch---hccCCHHHHHHHHHCcCCCCCCCCC-----------
Confidence            99999999999999999999999987431         111   2446789999999999999876544           


Q ss_pred             hhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 005790          187 PSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPL  266 (677)
Q Consensus       187 ~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL  266 (677)
                              |.||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus       124 --------g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL  194 (434)
T PHA02874        124 --------LKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPL  194 (434)
T ss_pred             --------CccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence                    379999999999999999999999999 78999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCch
Q 005790          267 HIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRT  346 (677)
Q Consensus       267 ~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~T  346 (677)
                      |+|+..|+.+++++|++.| ++++..+..|.||||+|+..+.           +.+.+|+.+      +++|.+|..|.|
T Consensus       195 ~~A~~~g~~~iv~~Ll~~g-~~i~~~~~~g~TpL~~A~~~~~-----------~~i~~Ll~~------~~in~~d~~G~T  256 (434)
T PHA02874        195 HNAAEYGDYACIKLLIDHG-NHIMNKCKNGFTPLHNAIIHNR-----------SAIELLINN------ASINDQDIDGST  256 (434)
T ss_pred             HHHHHcCCHHHHHHHHhCC-CCCcCCCCCCCCHHHHHHHCCh-----------HHHHHHHcC------CCCCCcCCCCCC
Confidence            9999999999999999999 6788899999999999998542           344555542      448889999999


Q ss_pred             HHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCch
Q 005790          347 ALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRA  419 (677)
Q Consensus       347 pLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~  419 (677)
                      |||+|+..+.+.+++++|++ .|+|++.+|..|.||||+|+..++...   +++.|+..++.++..+..+.+.
T Consensus       257 pLh~A~~~~~~~~iv~~Ll~-~gad~n~~d~~g~TpL~~A~~~~~~~~---~ik~ll~~~~~~~~~~~~~~~~  325 (434)
T PHA02874        257 PLHHAINPPCDIDIIDILLY-HKADISIKDNKGENPIDTAFKYINKDP---VIKDIIANAVLIKEADKLKDSD  325 (434)
T ss_pred             HHHHHHhcCCcHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHhCCccH---HHHHHHHhcCchhhccccchhH
Confidence            99999987658999999999 999999999999999999999884432   6888999998887766655333

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-41  Score=366.22  Aligned_cols=362  Identities=20%  Similarity=0.204  Sum_probs=310.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcC
Q 005790           27 ASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAG  106 (677)
Q Consensus        27 ~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~  106 (677)
                      .++++.+...   |.+.++++....+..+            ...+++++|.++..+..      +.    .-......|.
T Consensus        32 ~~~~~~~~~d---D~~tli~~kns~~~~~------------~~~gd~~~~~~~~~~y~------~~----~~~~~~a~D~   86 (929)
T KOG0510|consen   32 DSQALADTLD---DRHTLILEKNSSTPGK------------RAFGDTELHHASARNYI------LS----KLAISYAKDS   86 (929)
T ss_pred             hHHHHHhhHH---HHHHHHHHhccccchh------------hhhchhHHHHHHhhcch------hh----hhhhhhhhhc
Confidence            3555555553   7888888876554322            34578888888877644      11    3345566788


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790          107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI  186 (677)
Q Consensus       107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~  186 (677)
                      .|.||||+|+.....+.|++|++.|+ +....+.++.+|+|+|+ ..+..+++++|+++|+|+|..+..+          
T Consensus        87 ~~n~~l~~a~~~~~~~~i~~Lls~ga-d~~~~n~~~~aplh~A~-~~~~~s~L~~Ll~~~~dvnl~de~~----------  154 (929)
T KOG0510|consen   87 ADNTPLHAAVEYNQGDKIQVLLSYGA-DTPLRNLNKNAPLHLAA-DSGNYSCLKLLLDYGADVNLEDENG----------  154 (929)
T ss_pred             ccCchhHHHhhcchHHHHHHHHhcCC-CCChhhhhccCchhhcc-ccchHHHHHHHHHhcCCccccccCC----------
Confidence            99999999999999999999999998 56678899999999995 8899999999999999999776554          


Q ss_pred             hhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHh-----cCCCCCCCCCC
Q 005790          187 PSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA-----SFDIINSTDHQ  261 (677)
Q Consensus       187 ~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~-----~ga~in~~d~~  261 (677)
                               .||||.|+..++.|+.+.|++.|+++ ...|..|.+|+|.|+.+|..++.+..+.     .+..+|..+..
T Consensus       155 ---------~TpLh~A~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~  224 (929)
T KOG0510|consen  155 ---------FTPLHLAARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNE  224 (929)
T ss_pred             ---------CchhhHHHhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCC
Confidence                     79999999999999999999999999 7889999999999999999999999998     67789999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCC--------------ccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHc
Q 005790          262 GNTPLHIAAYRGQPAVVEALILASPSM--------------ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLAS  327 (677)
Q Consensus       262 g~tpL~~A~~~g~~~iv~~LL~~g~~~--------------~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~  327 (677)
                      +.||||.|+..|++++++.+|+.+..+              ++..|.+|.||||+|++.|+.          +.+..|+.
T Consensus       225 ~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~----------~svd~Ll~  294 (929)
T KOG0510|consen  225 KATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGP----------ESVDNLLG  294 (929)
T ss_pred             CCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCCh----------hHHHHHHH
Confidence            999999999999999999999987544              456789999999999996555          44555544


Q ss_pred             ccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhh-CCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcC
Q 005790          328 GQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS-APSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAG  406 (677)
Q Consensus       328 ~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~-~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~G  406 (677)
                      .     |++++.++.++.||||.|+..| +.++|+-||+ ..-...|..|..|+||||+|+..|+..    ++++|++.|
T Consensus       295 ~-----Ga~I~~kn~d~~spLH~AA~yg-~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~----v~qlLl~~G  364 (929)
T KOG0510|consen  295 F-----GASINSKNKDEESPLHFAAIYG-RINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDR----VVQLLLNKG  364 (929)
T ss_pred             c-----CCcccccCCCCCCchHHHHHcc-cHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHH----HHHHHHhcC
Confidence            4     4779999999999999999998 9999999998 444678888999999999999999977    799999999


Q ss_pred             CCCC---CCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCCCCCCCCCCCC
Q 005790          407 GIFG---CQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGM  465 (677)
Q Consensus       407 adin---~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~~~g~t~~~~  465 (677)
                      |+..   ..|.+|.||||.|+....          ..+|++|+.+||++..++..|.++...
T Consensus       365 A~~~~~~e~D~dg~TaLH~Aa~~g~----------~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  365 ALFLNMSEADSDGNTALHLAAKYGN----------TSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             hhhhcccccccCCchhhhHHHHhcc----------HHHHHHHHHcCCceeeccccccccccc
Confidence            9988   569999999999988533          679999999999999999999988886

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-40  Score=366.02  Aligned_cols=315  Identities=21%  Similarity=0.244  Sum_probs=273.8

Q ss_pred             cHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhc
Q 005790           74 QFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARS  153 (677)
Q Consensus        74 ~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~  153 (677)
                      .+..|+..|+.++++.|++   ..+..++..+..|.||||.|+..|+.++|++|++.|+ +++..+..|.|||++|+ ..
T Consensus         4 ~l~~ai~~gd~~~v~~ll~---~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga-~~n~~~~~~~t~L~~A~-~~   78 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIK---NKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGA-DINHINTKIPHPLLTAI-KI   78 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHH---cCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH-Hc
Confidence            4778899999999988886   2456678888899999999999999999999999997 55677888999999985 77


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHH
Q 005790          154 KNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTIL  233 (677)
Q Consensus       154 g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL  233 (677)
                      |+.+++++|+++|+++...                             ++.....+++++|++.|+++ +.++..|.|||
T Consensus        79 ~~~~iv~~Ll~~g~~~~~~-----------------------------~~~~~~~~~i~~ll~~g~d~-n~~~~~g~T~L  128 (434)
T PHA02874         79 GAHDIIKLLIDNGVDTSIL-----------------------------PIPCIEKDMIKTILDCGIDV-NIKDAELKTFL  128 (434)
T ss_pred             CCHHHHHHHHHCCCCCCcc-----------------------------hhccCCHHHHHHHHHCcCCC-CCCCCCCccHH
Confidence            9999999999999876422                             12234678999999999999 78899999999


Q ss_pred             HHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHH
Q 005790          234 HAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFR  313 (677)
Q Consensus       234 ~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~  313 (677)
                      |+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|++.| ++++..+..|.||||+|+..       
T Consensus       129 h~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-~~~n~~~~~g~tpL~~A~~~-------  200 (434)
T PHA02874        129 HYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG-AYANVKDNNGESPLHNAAEY-------  200 (434)
T ss_pred             HHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHc-------
Confidence            9999999999999999999999999999999999999999999999999999 67889999999999999994       


Q ss_pred             HhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCC-CC
Q 005790          314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRP-QS  392 (677)
Q Consensus       314 ~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~-~~  392 (677)
                         ++.+++++|++.+     ++++.++..|.||||+|+..+  .+++++|+.  |+++|.+|..|+||||+|+..+ +.
T Consensus       201 ---g~~~iv~~Ll~~g-----~~i~~~~~~g~TpL~~A~~~~--~~~i~~Ll~--~~~in~~d~~G~TpLh~A~~~~~~~  268 (434)
T PHA02874        201 ---GDYACIKLLIDHG-----NHIMNKCKNGFTPLHNAIIHN--RSAIELLIN--NASINDQDIDGSTPLHHAINPPCDI  268 (434)
T ss_pred             ---CCHHHHHHHHhCC-----CCCcCCCCCCCCHHHHHHHCC--hHHHHHHHc--CCCCCCcCCCCCCHHHHHHhcCCcH
Confidence               5567777777665     458888999999999999865  467777774  8999999999999999999876 44


Q ss_pred             chHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCCC
Q 005790          393 ASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDG  456 (677)
Q Consensus       393 ~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~  456 (677)
                      +    ++++|+++|++++.+|..|+|||+.|++...         ..++++.|+.+++.++..+
T Consensus       269 ~----iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~---------~~~~ik~ll~~~~~~~~~~  319 (434)
T PHA02874        269 D----IIDILLYHKADISIKDNKGENPIDTAFKYIN---------KDPVIKDIIANAVLIKEAD  319 (434)
T ss_pred             H----HHHHHHHCcCCCCCCCCCCCCHHHHHHHhCC---------ccHHHHHHHHhcCchhhcc
Confidence            4    7999999999999999999999999987432         1568999999998776543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=4e-41  Score=363.53  Aligned_cols=335  Identities=25%  Similarity=0.326  Sum_probs=289.6

Q ss_pred             ccccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCch
Q 005790           23 QWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSL  102 (677)
Q Consensus        23 ~~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~  102 (677)
                      +-+|+|++|.|+..+.. .-+.....                 ..+..+.++||+|++.+..+.++.|++    .|+++.
T Consensus        58 ~~~gd~~~~~~~~~~y~-~~~~~~~~-----------------a~D~~~n~~l~~a~~~~~~~~i~~Lls----~gad~~  115 (929)
T KOG0510|consen   58 RAFGDTELHHASARNYI-LSKLAISY-----------------AKDSADNTPLHAAVEYNQGDKIQVLLS----YGADTP  115 (929)
T ss_pred             hhhchhHHHHHHhhcch-hhhhhhhh-----------------hhhcccCchhHHHhhcchHHHHHHHHh----cCCCCC
Confidence            34688999999998876 11111111                 234568899999999999999999999    999999


Q ss_pred             hhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhh
Q 005790          103 IRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEH  182 (677)
Q Consensus       103 ~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~  182 (677)
                      ..+.++.+|+|+|+..|+.++++.|+++++ +++..|+.|.||||.|| ..++.|..+.|++.|++|...+..+      
T Consensus       116 ~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~-dvnl~de~~~TpLh~A~-~~~~~E~~k~Li~~~a~~~K~~~~~------  187 (929)
T KOG0510|consen  116 LRNLNKNAPLHLAADSGNYSCLKLLLDYGA-DVNLEDENGFTPLHLAA-RKNKVEAKKELINKGADPCKSDIDG------  187 (929)
T ss_pred             hhhhhccCchhhccccchHHHHHHHHHhcC-CccccccCCCchhhHHH-hcChHHHHHHHHhcCCCCCcccCcC------
Confidence            999999999999999999999999999994 88889999999999996 5588888899999999988666554      


Q ss_pred             hhcchhhhhhhccchHHHHHHhcCCHHHHHHHHh-----cCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC---
Q 005790          183 IEEIPSVYKWEMMNRAVHAAARGGNLKILKELLE-----NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI---  254 (677)
Q Consensus       183 ~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~-----~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~---  254 (677)
                                   ++|+|.|++.|..|+.+.++.     ++..+ +..+..+.||||.|+..|++++++.+|+.|..   
T Consensus       188 -------------~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~  253 (929)
T KOG0510|consen  188 -------------NFPIHEAARSGSKECMEIFLPEHGYERQTHI-NFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIAD  253 (929)
T ss_pred             -------------CchHHHHHHhcchhhhhhhhccccchhhccc-ccccCCCCcchhhhhhcCCHHHHHHHHhCccccch
Confidence                         679999999999999999998     66677 77889999999999999999999999998764   


Q ss_pred             ------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHH
Q 005790          255 ------------INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLM  322 (677)
Q Consensus       255 ------------in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv  322 (677)
                                  +|..|.+|.||||+|++.|+++.++.|+..| ++++.++.++.||||.|+++|+..+++.|       
T Consensus       254 ~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~G-a~I~~kn~d~~spLH~AA~yg~~ntv~rL-------  325 (929)
T KOG0510|consen  254 VQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFG-ASINSKNKDEESPLHFAAIYGRINTVERL-------  325 (929)
T ss_pred             hhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcC-CcccccCCCCCCchHHHHHcccHHHHHHH-------
Confidence                        4556889999999999999999999999999 77999999999999999997666555544       


Q ss_pred             HHHHc-ccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCcc---ccCCCCCcHHHHHhhCCCCchHHHH
Q 005790          323 KQLAS-GQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN---VRDNDGMTTLDLLKQRPQSASSDIL  398 (677)
Q Consensus       323 ~~Ll~-~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin---~~d~~G~TpL~~A~~~~~~~~~~~l  398 (677)
                         ++ .+    -.++|..|..|.||||+|+..| |..++++||+ .||+.+   ..|.+|.||||+|+..|+..    .
T Consensus       326 ---L~~~~----~rllne~D~~g~tpLHlaa~~g-H~~v~qlLl~-~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~----a  392 (929)
T KOG0510|consen  326 ---LQESD----TRLLNESDLHGMTPLHLAAKSG-HDRVVQLLLN-KGALFLNMSEADSDGNTALHLAAKYGNTS----A  392 (929)
T ss_pred             ---HhCcC----ccccccccccCCCchhhhhhcC-HHHHHHHHHh-cChhhhcccccccCCchhhhHHHHhccHH----H
Confidence               44 22    1347888999999999999888 9999999999 999988   56999999999999999988    5


Q ss_pred             HHHHHHcCCCCCCCcccCCchHHH
Q 005790          399 IRHLISAGGIFGCQDYSARRAIAS  422 (677)
Q Consensus       399 v~~Ll~~Gadin~~d~~G~T~L~~  422 (677)
                      ++.|+.+||++...+..|.+++++
T Consensus       393 v~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  393 VQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHHHcCCceeeccccccccccc
Confidence            899999999999999999999874

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.7e-41  Score=388.98  Aligned_cols=399  Identities=22%  Similarity=0.227  Sum_probs=298.4

Q ss_pred             cCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhc
Q 005790           26 YASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRA  105 (677)
Q Consensus        26 g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d  105 (677)
                      +.||||.||..+.++++++++.+|+++.-            .+..+.+++|.|+..++..++.+++.    +|+.++..+
T Consensus       209 ~~tpl~~a~~~nri~~~eLll~~gadv~a------------~d~~gl~~lh~a~~~g~~~i~~~l~~----~ga~~~~~~  272 (1143)
T KOG4177|consen  209 GFTPLHIACKKNRIKVVELLLKHGADVSA------------KDESGLTPLHVAAFMGHLDIVKLLLQ----HGASVNVST  272 (1143)
T ss_pred             CCCchhhhccccccceeeeeeeccCcCCc------------ccccCccHHHHHHhccchhHHHHHHh----cccccCccc
Confidence            44666666666666666666666666532            34455666666666666666666665    666666666


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      -.|.||+|.|++.+..+++++|+++|+ ++...+....||++.+ ...|..++++++++.++.++..+..+.........
T Consensus       273 vr~~tplh~AA~~~~~e~~~~ll~~ga-~~~~~~~~~kt~l~~a-~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~  350 (1143)
T KOG4177|consen  273 VRGETPLHMAARAGQVEVCKLLLQNGA-DVLAKARDDQTPLHIA-SRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAK  350 (1143)
T ss_pred             ccccCcchhhhccchhhhHhhhhccCc-ccccccccccChhhhh-cccchHHHHHHHhhccCCccccCcCCcccccHhhh
Confidence            666666666666666666666666654 3444455555666655 34456666666666666555544443322221111


Q ss_pred             ch--------------hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 005790          186 IP--------------SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS  251 (677)
Q Consensus       186 ~~--------------~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~  251 (677)
                      ..              ...-.+.+.+|+|.|+..|..+++++++.+|+++ +..+..|.||||.|+..++..+|+.++++
T Consensus       351 ~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~-~~~gk~gvTplh~aa~~~~~~~v~l~l~~  429 (1143)
T KOG4177|consen  351 EGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADP-NSAGKNGVTPLHVAAHYGNPRVVKLLLKR  429 (1143)
T ss_pred             hhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCCc-ccCCCCCcceeeehhhccCcceEEEEecc
Confidence            10              1123344578999999999999999999999997 88899999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHh---------------
Q 005790          252 FDIINSTDHQGNTPLHIAAYRG-QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRL---------------  315 (677)
Q Consensus       252 ga~in~~d~~g~tpL~~A~~~g-~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L---------------  315 (677)
                      |++++..+..|.||+|+|+..| ..++...+++.+ .+++.....|.||||.|+..|+.+.+..+               
T Consensus       430 gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g-~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l  508 (1143)
T KOG4177|consen  430 GASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYG-ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGL  508 (1143)
T ss_pred             CCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcC-CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhcc
Confidence            9999999999999999999999 788888888777 77899999999999999998888777666               


Q ss_pred             --------hHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHh
Q 005790          316 --------DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLK  387 (677)
Q Consensus       316 --------~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~  387 (677)
                              .....+++.+++++     ++++.++..|.||||+||..| +..+|++||+ +|+|++.+++.|+||||.||
T Consensus       509 ~~lhla~~~~~v~~~~~l~~~g-----a~v~~~~~r~~TpLh~A~~~g-~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa  581 (1143)
T KOG4177|consen  509 TPLHLAADEDTVKVAKILLEHG-----ANVDLRTGRGYTPLHVAVHYG-NVDLVKFLLE-HGADVNAKDKLGYTPLHQAA  581 (1143)
T ss_pred             chhhhhhhhhhHHHHHHHhhcC-----CceehhcccccchHHHHHhcC-CchHHHHhhh-CCccccccCCCCCChhhHHH
Confidence                    23344555555554     558888999999999999999 9999999999 99999999999999999999


Q ss_pred             hCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCC-----CCCCCCCCCCC
Q 005790          388 QRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGID-----VSSDGNANSGS  462 (677)
Q Consensus       388 ~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad-----~~~~~~~g~t~  462 (677)
                      ..|+.+    ++++|+++||++|..|.+|.|||+.|.....          ++++++|+..|++     .......|.++
T Consensus       582 ~~G~~~----i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~----------~~~~k~l~~~~~~~~~~~~~~e~~~g~~p  647 (1143)
T KOG4177|consen  582 QQGHND----IAELLLKHGASVNAADLDGFTPLHIAVRLGY----------LSVVKLLKVVTATPAATDPVKENRKGAVP  647 (1143)
T ss_pred             HcChHH----HHHHHHHcCCCCCcccccCcchhHHHHHhcc----------cchhhHHHhccCccccccchhhhhcccCh
Confidence            999877    7999999999999999999999999988533          7799999999999     54445555555


Q ss_pred             CCC
Q 005790          463 GGM  465 (677)
Q Consensus       463 ~~~  465 (677)
                      .+.
T Consensus       648 ~~v  650 (1143)
T KOG4177|consen  648 EDV  650 (1143)
T ss_pred             hhH
Confidence            443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.4e-40  Score=367.52  Aligned_cols=292  Identities=22%  Similarity=0.187  Sum_probs=260.4

Q ss_pred             HHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcC---CHHHHHHHHHcCCCccccCCCCCCCHHHHHHHh
Q 005790           76 DDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAG---DLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAAR  152 (677)
Q Consensus        76 ~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g---~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~  152 (677)
                      ..++.....+++++|++    .|++++.++..|.||||+|+..+   +.++|++|++.|+ +++..+..|.||||+|+ .
T Consensus        19 ~~~~~~~~~~~v~~Ll~----~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Ga-din~~~~~g~TpLh~A~-~   92 (471)
T PHA03095         19 LLNASNVTVEEVRRLLA----AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGA-DVNAPERCGFTPLHLYL-Y   92 (471)
T ss_pred             HHcCCCCCHHHHHHHHH----cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH-H
Confidence            34556777899999998    99999999999999999999999   9999999999998 67778889999999996 5


Q ss_pred             cC-CHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHH--hcCCHHHHHHHHhcCCCccccCCCCC
Q 005790          153 SK-NCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAA--RGGNLKILKELLENCTDVLTYRDKQG  229 (677)
Q Consensus       153 ~g-~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~--~~g~~eivk~LL~~ga~~~~~~d~~g  229 (677)
                      .| +.+++++|+++|++++..+..                   |+||||+|+  ..++.+++++|+++|+++ +..+..|
T Consensus        93 ~~~~~~iv~lLl~~ga~in~~~~~-------------------g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g  152 (471)
T PHA03095         93 NATTLDVIKLLIKAGADVNAKDKV-------------------GRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYG  152 (471)
T ss_pred             cCCcHHHHHHHHHcCCCCCCCCCC-------------------CCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCC
Confidence            56 699999999999999876654                   379999999  567899999999999999 7899999


Q ss_pred             CcHHHHHHHhC--CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc--CCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790          230 STILHAAAGRG--QVEVVKDLIASFDIINSTDHQGNTPLHIAAYR--GQPAVVEALILASPSMISVKNTSGETFLHSAVS  305 (677)
Q Consensus       230 ~TpL~~A~~~g--~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~--g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~  305 (677)
                      .||||+|+..+  +.+++++|+++|++++..|..|.||||+|+..  ++.++++.|++.| ++++.+|..|.||||+|+.
T Consensus       153 ~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g-~~~~~~d~~g~tpLh~Aa~  231 (471)
T PHA03095        153 MTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAG-CDPAATDMLGNTPLHSMAT  231 (471)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHh
Confidence            99999999876  68999999999999999999999999999875  7889999999999 7899999999999999998


Q ss_pred             cCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHH
Q 005790          306 GFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL  385 (677)
Q Consensus       306 ~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~  385 (677)
                      .+..        ...++..|+..+     +++|.+|..|.||||+|+..| +.++|++||+ .|+|+|.+|..|.||||+
T Consensus       232 ~~~~--------~~~~v~~ll~~g-----~din~~d~~g~TpLh~A~~~~-~~~~v~~LL~-~gad~n~~~~~g~tpl~~  296 (471)
T PHA03095        232 GSSC--------KRSLVLPLLIAG-----ISINARNRYGQTPLHYAAVFN-NPRACRRLIA-LGADINAVSSDGNTPLSL  296 (471)
T ss_pred             cCCc--------hHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCcccCCCCCCHHHH
Confidence            6642        234566666655     569999999999999999988 9999999999 999999999999999999


Q ss_pred             HhhCCCCchHHHHHHHHHHcCCCCCCCc
Q 005790          386 LKQRPQSASSDILIRHLISAGGIFGCQD  413 (677)
Q Consensus       386 A~~~~~~~~~~~lv~~Ll~~Gadin~~d  413 (677)
                      |+..++.+    +++.|++.+++++..+
T Consensus       297 A~~~~~~~----~v~~LL~~~~~~~~~~  320 (471)
T PHA03095        297 MVRNNNGR----AVRAALAKNPSAETVA  320 (471)
T ss_pred             HHHhCCHH----HHHHHHHhCCCHHHHH
Confidence            99999987    7899999999987544

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.3e-39  Score=361.65  Aligned_cols=292  Identities=21%  Similarity=0.212  Sum_probs=259.8

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcC---CHHHHHHHHhcCCCcccccccCCcchhhhhcchhh
Q 005790          113 YTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSK---NCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSV  189 (677)
Q Consensus       113 ~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g---~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~  189 (677)
                      ..|+..+++++|++|++.|+ +++..+..|.||||+|+ ..+   +.+++++|+++|++++..+..              
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga-~vn~~~~~g~t~Lh~a~-~~~~~~~~~iv~~Ll~~Gadin~~~~~--------------   82 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGA-DVNFRGEYGKTPLHLYL-HYSSEKVKDIVRLLLEAGADVNAPERC--------------   82 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCC-CcccCCCCCCCHHHHHH-HhcCCChHHHHHHHHHCCCCCCCCCCC--------------
Confidence            56778899999999999997 56788999999999996 546   999999999999999977654              


Q ss_pred             hhhhccchHHHHHHhcC-CHHHHHHHHhcCCCccccCCCCCCcHHHHHH--HhCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 005790          190 YKWEMMNRAVHAAARGG-NLKILKELLENCTDVLTYRDKQGSTILHAAA--GRGQVEVVKDLIASFDIINSTDHQGNTPL  266 (677)
Q Consensus       190 ~~~~~~~t~Lh~A~~~g-~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~--~~g~~eivk~Ll~~ga~in~~d~~g~tpL  266 (677)
                           |.||||+|+..| +.+++++|+++|+++ +..+..|.||||+|+  ..++.+++++|+++|++++..|..|.|||
T Consensus        83 -----g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL  156 (471)
T PHA03095         83 -----GFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPL  156 (471)
T ss_pred             -----CCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHH
Confidence                 479999999999 599999999999998 889999999999999  56789999999999999999999999999


Q ss_pred             HHHHHcC--CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCC
Q 005790          267 HIAAYRG--QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDG  344 (677)
Q Consensus       267 ~~A~~~g--~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G  344 (677)
                      |+|+..+  +.+++++|++.| ++++..+..|.||||+++...        ....++++.|++.+     ++++.+|..|
T Consensus       157 ~~a~~~~~~~~~iv~~Ll~~g-~~~~~~d~~g~t~Lh~~~~~~--------~~~~~i~~~Ll~~g-----~~~~~~d~~g  222 (471)
T PHA03095        157 AVLLKSRNANVELLRLLIDAG-ADVYAVDDRFRSLLHHHLQSF--------KPRARIVRELIRAG-----CDPAATDMLG  222 (471)
T ss_pred             HHHHHcCCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHHC--------CCcHHHHHHHHHcC-----CCCcccCCCC
Confidence            9999876  689999999999 566667999999999998743        34567788887766     5689999999


Q ss_pred             chHHHHHHhCCCcH--HHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHH
Q 005790          345 RTALHMAITGNVHL--ELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIAS  422 (677)
Q Consensus       345 ~TpLh~A~~~~~~~--eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~  422 (677)
                      .||||+|+..+ +.  .+++.|++ .|+++|.+|..|+||||+|+..|+.+    ++++|+++|||+|.+|..|+|||+.
T Consensus       223 ~tpLh~Aa~~~-~~~~~~v~~ll~-~g~din~~d~~g~TpLh~A~~~~~~~----~v~~LL~~gad~n~~~~~g~tpl~~  296 (471)
T PHA03095        223 NTPLHSMATGS-SCKRSLVLPLLI-AGISINARNRYGQTPLHYAAVFNNPR----ACRRLIALGADINAVSSDGNTPLSL  296 (471)
T ss_pred             CCHHHHHHhcC-CchHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence            99999999977 43  68899999 99999999999999999999999987    6899999999999999999999999


Q ss_pred             HHHHhCCCCCCCCccchhhHHHHHHcCCCCCCCC
Q 005790          423 HIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDG  456 (677)
Q Consensus       423 al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~  456 (677)
                      |+....          .+++++||++|++++..+
T Consensus       297 A~~~~~----------~~~v~~LL~~~~~~~~~~  320 (471)
T PHA03095        297 MVRNNN----------GRAVRAALAKNPSAETVA  320 (471)
T ss_pred             HHHhCC----------HHHHHHHHHhCCCHHHHH
Confidence            988644          789999999999986543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.3e-40  Score=381.80  Aligned_cols=403  Identities=23%  Similarity=0.236  Sum_probs=326.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCC
Q 005790           29 PIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYG  108 (677)
Q Consensus        29 pL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G  108 (677)
                      +++.|+..++.+++++|+...++.+.            ....+.+|+|.|+..+...++++++.    +|+++...|..|
T Consensus       179 ~~~~~~~~~~~~~~~ll~~~~~~~~a------------~~~~~~tpl~~a~~~nri~~~eLll~----~gadv~a~d~~g  242 (1143)
T KOG4177|consen  179 RLHVAAHCGHARVAKLLLDKKADPNA------------SALNGFTPLHIACKKNRIKVVELLLK----HGADVSAKDESG  242 (1143)
T ss_pred             hhhHHhhcchHHHHhhhhcccCCccc------------cccCCCCchhhhccccccceeeeeee----ccCcCCcccccC
Confidence            78999999999999999999999864            36679999999999999999999998    999999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch-
Q 005790          109 GWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP-  187 (677)
Q Consensus       109 ~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~-  187 (677)
                      .||||.|+..|+++++.+|+.+++ .++..+..|.||+|+|| ..+..+++++|+++|+++.................. 
T Consensus       243 l~~lh~a~~~g~~~i~~~l~~~ga-~~~~~~vr~~tplh~AA-~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~  320 (1143)
T KOG4177|consen  243 LTPLHVAAFMGHLDIVKLLLQHGA-SVNVSTVRGETPLHMAA-RAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGH  320 (1143)
T ss_pred             ccHHHHHHhccchhHHHHHHhccc-ccCcccccccCcchhhh-ccchhhhHhhhhccCcccccccccccChhhhhcccch
Confidence            999999999999999999999997 66778899999999996 779999999999999999877665433222211111 


Q ss_pred             -------------hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 005790          188 -------------SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI  254 (677)
Q Consensus       188 -------------~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~  254 (677)
                                   ..-....+.+|||+++..++.+++.+|...+... ...+..|.||+|.|+..|..+++++|+.+|++
T Consensus       321 ~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~-~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~  399 (1143)
T KOG4177|consen  321 EEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQR-RQAEEKGFTPLHLAVKSGRVSVVELLLEAGAD  399 (1143)
T ss_pred             HHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhcccccc-CcccccCCcchhhhcccCchhHHHhhhhccCC
Confidence                         1223445678888888888888777777777766 66788889999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCc-hHHHHHh------------------
Q 005790          255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQ-TYAFRRL------------------  315 (677)
Q Consensus       255 in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~-~~~~~~L------------------  315 (677)
                      ++.....|.||||.|+..++..+++.+++.+ ++.+..+..|.||+|+|+..+. .+....+                  
T Consensus       400 ~~~~gk~gvTplh~aa~~~~~~~v~l~l~~g-A~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~L  478 (1143)
T KOG4177|consen  400 PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRG-ASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPL  478 (1143)
T ss_pred             cccCCCCCcceeeehhhccCcceEEEEeccC-CChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcch
Confidence            9999999999999999999999999999888 6788899999999999998652 2222111                  


Q ss_pred             -----hHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCC
Q 005790          316 -----DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRP  390 (677)
Q Consensus       316 -----~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~  390 (677)
                           .++.+++..|++.+     +..+.....|.|+||.|...+ ...+++.+++ .|++++.++..|.||||+|+.+|
T Consensus       479 hlaaq~Gh~~~~~llle~~-----~~~~~~~~~~l~~lhla~~~~-~v~~~~~l~~-~ga~v~~~~~r~~TpLh~A~~~g  551 (1143)
T KOG4177|consen  479 HLAAQEGHTEVVQLLLEGG-----ANDNLDAKKGLTPLHLAADED-TVKVAKILLE-HGANVDLRTGRGYTPLHVAVHYG  551 (1143)
T ss_pred             hhhhccCCchHHHHhhhcC-----CccCccchhccchhhhhhhhh-hHHHHHHHhh-cCCceehhcccccchHHHHHhcC
Confidence                 23344444444333     113333444555555555555 5566666666 68999999999999999999999


Q ss_pred             CCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q 005790          391 QSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSST  470 (677)
Q Consensus       391 ~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~~~g~t~~~~~~~~~  470 (677)
                      +.+    +|++|+++|||++.+++.|+||||.|+..-.          .+|+++|+++||++|+.+..|.|+.......+
T Consensus       552 ~v~----~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~----------~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg  617 (1143)
T KOG4177|consen  552 NVD----LVKFLLEHGADVNAKDKLGYTPLHQAAQQGH----------NDIAELLLKHGASVNAADLDGFTPLHIAVRLG  617 (1143)
T ss_pred             Cch----HHHHhhhCCccccccCCCCCChhhHHHHcCh----------HHHHHHHHHcCCCCCcccccCcchhHHHHHhc
Confidence            998    7999999999999999999999999998532          78999999999999999999998876665444


Q ss_pred             cC
Q 005790          471 EL  472 (677)
Q Consensus       471 ~~  472 (677)
                      -.
T Consensus       618 ~~  619 (1143)
T KOG4177|consen  618 YL  619 (1143)
T ss_pred             cc
Confidence            43

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.6e-39  Score=359.46  Aligned_cols=281  Identities=23%  Similarity=0.262  Sum_probs=203.0

Q ss_pred             HHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHH-----HHHhcCCHHH
Q 005790           84 KVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFY-----AAARSKNCDV  158 (677)
Q Consensus        84 ~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~-----AA~~~g~~ev  158 (677)
                      ..+++.+++    .+...+..+..+.||||.|+..|+.++|++|++.|+ +++..+..+.||||+     |+ ..++.++
T Consensus        15 ~~~~~~~~~----~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~-~~~~~~~~~~t~L~~~~~~~a~-~~~~~~i   88 (480)
T PHA03100         15 VKNIKYIIM----EDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGA-DINSSTKNNSTPLHYLSNIKYN-LTDVKEI   88 (480)
T ss_pred             HHHHHHHHh----cCccchhhhcccchhhhhhhccCCHHHHHHHHHcCC-CCCCccccCcCHHHHHHHHHHH-hhchHHH
Confidence            344555555    566666778889999999999999999999999997 556677889999999     84 7799999


Q ss_pred             HHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHH--hcCCHHHHHHHHhcCCCccccCCCCCCcHHHHH
Q 005790          159 FRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAA--RGGNLKILKELLENCTDVLTYRDKQGSTILHAA  236 (677)
Q Consensus       159 v~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~--~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A  236 (677)
                      +++|+++|++++..+..                   |.||||+|+  ..|+.+++++|+++|+++ +..+..|.||||+|
T Consensus        89 v~~Ll~~ga~i~~~d~~-------------------g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A  148 (480)
T PHA03100         89 VKLLLEYGANVNAPDNN-------------------GITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLY  148 (480)
T ss_pred             HHHHHHCCCCCCCCCCC-------------------CCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHH
Confidence            99999999988765544                   368999999  999999999999999998 77899999999999


Q ss_pred             HHhC--CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCC------CchhhhhhhcCc
Q 005790          237 AGRG--QVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSG------ETFLHSAVSGFQ  308 (677)
Q Consensus       237 ~~~g--~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g------~tpLh~A~~~~~  308 (677)
                      +..|  +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++| ++++..+..|      .||||+|+..++
T Consensus       149 ~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~~~~~t~l~~a~~~~~  227 (480)
T PHA03100        149 LESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNG-ADINAGDIETLLFTIFETPLHIAACYNE  227 (480)
T ss_pred             HHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcC-CCccCCCCCCCcHHHHHhHHHHHHHhCc
Confidence            9999  999999999999999999999999999999999999999999998 6677777777      444444444211


Q ss_pred             hHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhh
Q 005790          309 TYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQ  388 (677)
Q Consensus       309 ~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~  388 (677)
                              ...+++++|++.|     +++|.+|..|.||||+|+..+ +.+++++|++ .|+|+|.+|..|.|||++|+.
T Consensus       228 --------~~~~iv~~Ll~~g-----~din~~d~~g~TpL~~A~~~~-~~~iv~~Ll~-~gad~n~~d~~g~tpl~~A~~  292 (480)
T PHA03100        228 --------ITLEVVNYLLSYG-----VPINIKDVYGFTPLHYAVYNN-NPEFVKYLLD-LGANPNLVNKYGDTPLHIAIL  292 (480)
T ss_pred             --------CcHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCccCCCCCcHHHHHHH
Confidence                    0033333333332     224444444444444444444 4444444444 444444444444444444444


Q ss_pred             CCCCchHHHHHHHHHHcCCCCC
Q 005790          389 RPQSASSDILIRHLISAGGIFG  410 (677)
Q Consensus       389 ~~~~~~~~~lv~~Ll~~Gadin  410 (677)
                      .++.+    ++++|+++|++++
T Consensus       293 ~~~~~----iv~~Ll~~g~~i~  310 (480)
T PHA03100        293 NNNKE----IFKLLLNNGPSIK  310 (480)
T ss_pred             hCCHH----HHHHHHhcCCCHH
Confidence            44433    3444444444443

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-38  Score=353.25  Aligned_cols=270  Identities=19%  Similarity=0.206  Sum_probs=187.1

Q ss_pred             cccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHH
Q 005790           70 DDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYA  149 (677)
Q Consensus        70 ~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~A  149 (677)
                      .+.+|||.|+..++.+++++|++    .|++++.+|..|.||||+||..|+.+++++|++.+.....   .++.++++.|
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~----~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~l~~a  108 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLT----RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV---FYTLVAIKDA  108 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc---ccchhhHHHH
Confidence            35556666666666666666666    6667777788888888888888888888888887653321   4567888887


Q ss_pred             HHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhc--CCHHHHHHHHhcCCCccccCCC
Q 005790          150 AARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARG--GNLKILKELLENCTDVLTYRDK  227 (677)
Q Consensus       150 A~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~--g~~eivk~LL~~ga~~~~~~d~  227 (677)
                      + ..++.+++++|+..+++.....    .                 ...+..+...  .+.+++++|+++|+++ +..+.
T Consensus       109 ~-~~~~~ei~~~Ll~~~~~~~~~~----~-----------------~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~  165 (477)
T PHA02878        109 F-NNRNVEIFKIILTNRYKNIQTI----D-----------------LVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDR  165 (477)
T ss_pred             H-HcCCHHHHHHHHhCcccCcccC----c-----------------HHHHhhccchhhHHHHHHHHHHHcCCCC-CccCC
Confidence            4 6688888888888765322110    0                 0011111111  2245888888888888 66666


Q ss_pred             C-CCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhc
Q 005790          228 Q-GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSG  306 (677)
Q Consensus       228 ~-g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~  306 (677)
                      . |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.| ++                  
T Consensus       166 ~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-a~------------------  226 (477)
T PHA02878        166 HKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG-AS------------------  226 (477)
T ss_pred             CCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC-CC------------------
Confidence            6 888888888888888888888888888888888888888888888888888888877 33                  


Q ss_pred             CchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCC-CCCcHHHH
Q 005790          307 FQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN-DGMTTLDL  385 (677)
Q Consensus       307 ~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~-~G~TpL~~  385 (677)
                                                    ++.+|..|.||||+|+..+.+.+++++|++ .|+++|.++. .|.||||+
T Consensus       227 ------------------------------in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~-~gadvn~~~~~~g~TpLh~  275 (477)
T PHA02878        227 ------------------------------TDARDKCGNTPLHISVGYCKDYDILKLLLE-HGVDVNAKSYILGLTALHS  275 (477)
T ss_pred             ------------------------------CCCCCCCCCCHHHHHHHhcCCHHHHHHHHH-cCCCCCccCCCCCCCHHHH
Confidence                                          444455666666666654336677777777 6777776654 56777777


Q ss_pred             HhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHH
Q 005790          386 LKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIK  425 (677)
Q Consensus       386 A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~  425 (677)
                      |+  ++.+    ++++|+++|||+|.+|..|.|||+.|+.
T Consensus       276 A~--~~~~----~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        276 SI--KSER----KLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             Hc--cCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            73  2322    5666777777777777777777777665

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-37  Score=348.53  Aligned_cols=287  Identities=24%  Similarity=0.260  Sum_probs=258.2

Q ss_pred             cCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHH-
Q 005790           36 NGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYT-  114 (677)
Q Consensus        36 ~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~-  114 (677)
                      ....++++++++.+-..+            ...+.+.+|||.|+..++.+++++|++    .|++++..+..|.||||+ 
T Consensus        12 ~~~~~~~~~~~~~~~~~~------------~~~~~~~t~L~~A~~~~~~~ivk~Ll~----~g~~~~~~~~~~~t~L~~~   75 (480)
T PHA03100         12 IIKVKNIKYIIMEDDLND------------YSYKKPVLPLYLAKEARNIDVVKILLD----NGADINSSTKNNSTPLHYL   75 (480)
T ss_pred             HHHHHHHHHHHhcCccch------------hhhcccchhhhhhhccCCHHHHHHHHH----cCCCCCCccccCcCHHHHH
Confidence            345688899998763332            246678999999999999999999999    999999999999999999 


Q ss_pred             ----HHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHH-hcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhh
Q 005790          115 ----AASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAA-RSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSV  189 (677)
Q Consensus       115 ----Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~-~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~  189 (677)
                          |+..|+.+++++|++.|+.. +..+..|.||||+|+. ..|+.+++++|+++|++++..+..              
T Consensus        76 ~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~--------------  140 (480)
T PHA03100         76 SNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSD--------------  140 (480)
T ss_pred             HHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCC--------------
Confidence                99999999999999999855 8889999999999853 779999999999999998876554              


Q ss_pred             hhhhccchHHHHHHhcC--CHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCC-----
Q 005790          190 YKWEMMNRAVHAAARGG--NLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG-----  262 (677)
Q Consensus       190 ~~~~~~~t~Lh~A~~~g--~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g-----  262 (677)
                           |.||||+|+..|  +.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|     
T Consensus       141 -----g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~  214 (480)
T PHA03100        141 -----GENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTI  214 (480)
T ss_pred             -----CCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHH
Confidence                 378999999999  999999999999998 7788899999999999999999999999999999999888     


Q ss_pred             -CcHHHHHHHcCC--HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhc
Q 005790          263 -NTPLHIAAYRGQ--PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINA  339 (677)
Q Consensus       263 -~tpL~~A~~~g~--~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~  339 (677)
                       .||||+|+..|+  .+++++|++.| ++++.+|..|.||||+|+..          ++.+++++|++.|     ++++.
T Consensus       215 ~~t~l~~a~~~~~~~~~iv~~Ll~~g-~din~~d~~g~TpL~~A~~~----------~~~~iv~~Ll~~g-----ad~n~  278 (480)
T PHA03100        215 FETPLHIAACYNEITLEVVNYLLSYG-VPINIKDVYGFTPLHYAVYN----------NNPEFVKYLLDLG-----ANPNL  278 (480)
T ss_pred             HHhHHHHHHHhCcCcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHc----------CCHHHHHHHHHcC-----CCCCc
Confidence             899999999999  99999999998 78999999999999999995          4566777776655     56999


Q ss_pred             cCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCC
Q 005790          340 KNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN  377 (677)
Q Consensus       340 ~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~  377 (677)
                      +|..|.||||+|+..+ +.+++++|++ .|++++..+.
T Consensus       279 ~d~~g~tpl~~A~~~~-~~~iv~~Ll~-~g~~i~~i~~  314 (480)
T PHA03100        279 VNKYGDTPLHIAILNN-NKEIFKLLLN-NGPSIKTIIE  314 (480)
T ss_pred             cCCCCCcHHHHHHHhC-CHHHHHHHHh-cCCCHHHHHH
Confidence            9999999999999988 9999999999 9999987653

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-36  Score=340.88  Aligned_cols=284  Identities=19%  Similarity=0.203  Sum_probs=206.5

Q ss_pred             hchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHh-----c
Q 005790           81 CRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASA--GDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAAR-----S  153 (677)
Q Consensus        81 ~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~--g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~-----~  153 (677)
                      ....+++++|++    .|+++|.. ..|.||||.++..  ++.++|++|+++|++ ++..+ .+.||||.|+..     .
T Consensus        13 ~~~~~~v~~LL~----~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd-vn~~~-~~~tpL~~a~~~~~~~~~   85 (494)
T PHA02989         13 TVDKNALEFLLR----TGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGAD-VNYKG-YIETPLCAVLRNREITSN   85 (494)
T ss_pred             cCcHHHHHHHHH----cCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCC-ccCCC-CCCCcHHHHHhccCcchh
Confidence            356777888887    78888877 5677877665544  367888888888874 44443 467888876421     2


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhc---CCHHHHHHHHhcCCCccccCCCCCC
Q 005790          154 KNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARG---GNLKILKELLENCTDVLTYRDKQGS  230 (677)
Q Consensus       154 g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~eivk~LL~~ga~~~~~~d~~g~  230 (677)
                      ++.+++++|+++|++++..+..|                   .||||.|+..   ++.++|++|+++|+++++..|..|.
T Consensus        86 ~~~~iv~~Ll~~Gadin~~d~~g-------------------~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~  146 (494)
T PHA02989         86 KIKKIVKLLLKFGADINLKTFNG-------------------VSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGY  146 (494)
T ss_pred             hHHHHHHHHHHCCCCCCCCCCCC-------------------CcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCC
Confidence            34678888888888887665443                   5788877654   5678888888888887556778888


Q ss_pred             cHHHHHHHh--CCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHcC----CHHHHHHHHHhCCCCccccCCCCCchhhhh
Q 005790          231 TILHAAAGR--GQVEVVKDLIASFDIINS-TDHQGNTPLHIAAYRG----QPAVVEALILASPSMISVKNTSGETFLHSA  303 (677)
Q Consensus       231 TpL~~A~~~--g~~eivk~Ll~~ga~in~-~d~~g~tpL~~A~~~g----~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A  303 (677)
                      ||||+|+..  ++.++|++|+++|++++. .+..|.||||+|+..+    +.+++++|++.| ++++..+..+.|+||.+
T Consensus       147 tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~G-a~vn~~~~~~~t~l~~~  225 (494)
T PHA02989        147 NLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKG-VNIETNNNGSESVLESF  225 (494)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCC-CCccccCCccccHHHHH
Confidence            888887654  577888888888888877 5677888888877654    788888888887 56777777788888877


Q ss_pred             hhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHH
Q 005790          304 VSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL  383 (677)
Q Consensus       304 ~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL  383 (677)
                      +..+..    ......+++++|+.+      +++|.+|..|.||||+|+..+ +.++|++||+ .|+|+|.+|..|.|||
T Consensus       226 ~~~~~~----~~~~~~~il~~l~~~------advn~~d~~G~TpL~~Aa~~~-~~~~v~~LL~-~Gadin~~d~~G~TpL  293 (494)
T PHA02989        226 LDNNKI----LSKKEFKVLNFILKY------IKINKKDKKGFNPLLISAKVD-NYEAFNYLLK-LGDDIYNVSKDGDTVL  293 (494)
T ss_pred             HHhchh----hcccchHHHHHHHhC------CCCCCCCCCCCCHHHHHHHhc-CHHHHHHHHH-cCCCccccCCCCCCHH
Confidence            764321    113456677766543      347888888888888888877 8888888888 7888888888888888


Q ss_pred             HHHhhCCCCchHHHHHHHHHHcCC
Q 005790          384 DLLKQRPQSASSDILIRHLISAGG  407 (677)
Q Consensus       384 ~~A~~~~~~~~~~~lv~~Ll~~Ga  407 (677)
                      |+|+..++.+    +++.|++.+.
T Consensus       294 ~~A~~~~~~~----iv~~LL~~~p  313 (494)
T PHA02989        294 TYAIKHGNID----MLNRILQLKP  313 (494)
T ss_pred             HHHHHcCCHH----HHHHHHhcCC
Confidence            8888888766    5666666654

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-36  Score=340.14  Aligned_cols=269  Identities=16%  Similarity=0.148  Sum_probs=229.7

Q ss_pred             cCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhc-CCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccc
Q 005790          118 AGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARS-KNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMN  196 (677)
Q Consensus       118 ~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~-g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (677)
                      ..+.++|++||++|++ ++.. ..|.|||+++++.. ++.++|++|+++||++|..+. +                   .
T Consensus        13 ~~~~~~v~~LL~~Gad-vN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~-~-------------------~   70 (494)
T PHA02989         13 TVDKNALEFLLRTGFD-VNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGY-I-------------------E   70 (494)
T ss_pred             cCcHHHHHHHHHcCCC-cccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCC-C-------------------C
Confidence            4789999999999985 5555 56889987765554 479999999999999997642 1                   4


Q ss_pred             hHHHHHHh------cCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHh---CCHHHHHHHHhcCCCC-CCCCCCCCcHH
Q 005790          197 RAVHAAAR------GGNLKILKELLENCTDVLTYRDKQGSTILHAAAGR---GQVEVVKDLIASFDII-NSTDHQGNTPL  266 (677)
Q Consensus       197 t~Lh~A~~------~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~---g~~eivk~Ll~~ga~i-n~~d~~g~tpL  266 (677)
                      ||||.|+.      .++.+++++|+++|+++ +.++..|.||||.|+..   ++.+++++|+++|+++ +..|..|.|||
T Consensus        71 tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpL  149 (494)
T PHA02989         71 TPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLL  149 (494)
T ss_pred             CcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHH
Confidence            89999875      57899999999999999 88999999999988765   6799999999999999 88999999999


Q ss_pred             HHHHHc--CCHHHHHHHHHhCCCCccc-cCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCC
Q 005790          267 HIAAYR--GQPAVVEALILASPSMISV-KNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNND  343 (677)
Q Consensus       267 ~~A~~~--g~~~iv~~LL~~g~~~~~~-~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~  343 (677)
                      |+|+..  ++.+++++|+++| ++++. .+..|.||||+|+..+..      ..+.+++++|++.|     ++++.+|..
T Consensus       150 h~a~~~~~~~~~iv~~Ll~~G-adi~~~~~~~g~tpL~~a~~~~~~------~~~~~iv~~Ll~~G-----a~vn~~~~~  217 (494)
T PHA02989        150 HMYLESFSVKKDVIKILLSFG-VNLFEKTSLYGLTPMNIYLRNDID------VISIKVIKYLIKKG-----VNIETNNNG  217 (494)
T ss_pred             HHHHHhccCCHHHHHHHHHcC-CCccccccccCCChHHHHHhcccc------cccHHHHHHHHhCC-----CCccccCCc
Confidence            998764  6899999999999 56666 688999999999875432      46689999999999     348888889


Q ss_pred             CchHHHHHHhCC-----CcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCc
Q 005790          344 GRTALHMAITGN-----VHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARR  418 (677)
Q Consensus       344 G~TpLh~A~~~~-----~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T  418 (677)
                      |.|+||.++..+     ...+++++|+.  |+|+|.+|..|+||||+|+..++.+    ++++|+++|||+|.+|..|+|
T Consensus       218 ~~t~l~~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL~~Aa~~~~~~----~v~~LL~~Gadin~~d~~G~T  291 (494)
T PHA02989        218 SESVLESFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFNPLLISAKVDNYE----AFNYLLKLGDDIYNVSKDGDT  291 (494)
T ss_pred             cccHHHHHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCCHHHHHHHhcCHH----HHHHHHHcCCCccccCCCCCC
Confidence            999999877533     25788888775  6999999999999999999999977    689999999999999999999


Q ss_pred             hHHHHHHHh
Q 005790          419 AIASHIKML  427 (677)
Q Consensus       419 ~L~~al~~~  427 (677)
                      |||+|+...
T Consensus       292 pL~~A~~~~  300 (494)
T PHA02989        292 VLTYAIKHG  300 (494)
T ss_pred             HHHHHHHcC
Confidence            999998643

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.3e-36  Score=308.29  Aligned_cols=237  Identities=16%  Similarity=0.169  Sum_probs=197.2

Q ss_pred             cCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccch
Q 005790          118 AGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNR  197 (677)
Q Consensus       118 ~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  197 (677)
                      .++.+++++|+++++.   ..|..|.||||+|+ ..|+.+++++|+++|++++..+                     +.|
T Consensus         9 ~~~~~~~~~Lis~~a~---~~D~~G~TpLh~Aa-~~g~~eiv~~Ll~~ga~~n~~d---------------------~~T   63 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---KADVHGHSALYYAI-ADNNVRLVCTLLNAGALKNLLE---------------------NEF   63 (284)
T ss_pred             cCHHHHHHHHHhCCCC---CCCCCCCcHHHHHH-HcCCHHHHHHHHHCcCCCcCCC---------------------CCC
Confidence            4678888888888763   46788889998885 6688999999999888776432                     258


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHHHHcCCHH
Q 005790          198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN-TPLHIAAYRGQPA  276 (677)
Q Consensus       198 ~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~-tpL~~A~~~g~~~  276 (677)
                      |||+|+..|+.++|++|++.|+++ +.+|..|+||||+|+..|+.+++++|+++|++++..+..|+ ||||+|+..|+.+
T Consensus        64 pLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~e  142 (284)
T PHA02791         64 PLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS  142 (284)
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHH
Confidence            999999999999999999999888 77888899999999999999999999999999888888774 8999999999999


Q ss_pred             HHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccC-CCCchHHHHHHhCC
Q 005790          277 VVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKN-NDGRTALHMAITGN  355 (677)
Q Consensus       277 iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d-~~G~TpLh~A~~~~  355 (677)
                      ++++|+++++..                                                   .| ..|.||||+|+..|
T Consensus       143 ivk~LL~~~~~~---------------------------------------------------~d~~~g~TpLh~Aa~~g  171 (284)
T PHA02791        143 IVSYFLSEIPST---------------------------------------------------FDLAILLSCIHITIKNG  171 (284)
T ss_pred             HHHHHHhcCCcc---------------------------------------------------cccccCccHHHHHHHcC
Confidence            999998775321                                                   11 24789999999988


Q ss_pred             CcHHHHHHHhhCCCCCccccCCCCCcH-HHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCC
Q 005790          356 VHLELVQLLMSAPSINVNVRDNDGMTT-LDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPG  434 (677)
Q Consensus       356 ~~~eiv~lLL~~~Gadin~~d~~G~Tp-L~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~  434 (677)
                       +.++|++||+ +|+|+|.+|..|.|| ||+|+..++.+    ++++|+++||++|.+|..| ++|.             
T Consensus       172 -~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e----~v~lLl~~Ga~in~~~~~~-~~l~-------------  231 (284)
T PHA02791        172 -HVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLE----MLQALFKYDINIYSVNLEN-VLLD-------------  231 (284)
T ss_pred             -CHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHH----HHHHHHHCCCCCccCcccC-ccCC-------------
Confidence             9999999999 899999999999987 99999999987    6899999999999999854 6651             


Q ss_pred             CccchhhHHHHHHcCCCCCC
Q 005790          435 TSFRISDTEIFLYTGIDVSS  454 (677)
Q Consensus       435 ~~~~~~~v~~LL~~Gad~~~  454 (677)
                         ..|++++||++-++...
T Consensus       232 ---~~e~~~~ll~~~~~~~~  248 (284)
T PHA02791        232 ---DAEIAKMIIEKHVEYKS  248 (284)
T ss_pred             ---CHHHHHHHHHhhhhhcc
Confidence               17799999999988654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-36  Score=309.96  Aligned_cols=195  Identities=23%  Similarity=0.235  Sum_probs=171.5

Q ss_pred             ccCcHHHHHHHcCCHHHHHHHHH-hcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchh
Q 005790           25 WYASPIDWAAANGHYDLVRELLR-IDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLI  103 (677)
Q Consensus        25 ~g~TpL~~Aa~~G~~diV~~LL~-~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~  103 (677)
                      .|.|||.+||++||.++|++|++ .++++...    ...+.-...+.+.+||-.|+..|+.+|+++|++    .|+++|.
T Consensus        41 ~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~----GsV~FDge~IegappLWaAsaAGHl~vVk~L~~----~ga~VN~  112 (615)
T KOG0508|consen   41 NGGTPLLIAARNGHADVVEYLLEHCRASPEQG----GSVRFDGETIEGAPPLWAASAAGHLEVVKLLLR----RGASVND  112 (615)
T ss_pred             CCCCceeeehhcCcHHHHHHHHHHhcCCccCC----ceEEeCCcccCCCchhhHHhccCcHHHHHHHHH----hcCcccc
Confidence            47799999999999999999999 57766321    001111235678889999999999999999999    9999999


Q ss_pred             hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790          104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI  183 (677)
Q Consensus       104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~  183 (677)
                      ......|||-.||..|++++|++|+++++ +....+..|.|.||+|| ..|+.+|+++|++.|+|+|..+..|       
T Consensus       113 tT~TNStPLraACfDG~leivKyLvE~ga-d~~IanrhGhTcLmIa~-ykGh~~I~qyLle~gADvn~ks~kG-------  183 (615)
T KOG0508|consen  113 TTRTNSTPLRAACFDGHLEIVKYLVEHGA-DPEIANRHGHTCLMIAC-YKGHVDIAQYLLEQGADVNAKSYKG-------  183 (615)
T ss_pred             ccccCCccHHHHHhcchhHHHHHHHHcCC-CCcccccCCCeeEEeee-ccCchHHHHHHHHhCCCcchhcccC-------
Confidence            99999999999999999999999999998 67778999999999996 6699999999999999999776664       


Q ss_pred             hcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHh
Q 005790          184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA  250 (677)
Q Consensus       184 ~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~  250 (677)
                                  +|+||.+++.|+++++++|+.+|+.+ . .|..|.|||..|+..|+.++|++|++
T Consensus       184 ------------NTALH~caEsG~vdivq~Ll~~ga~i-~-~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  184 ------------NTALHDCAESGSVDIVQLLLKHGAKI-D-VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             ------------chHHHhhhhcccHHHHHHHHhCCcee-e-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence                        89999999999999999999999987 3 67889999999999999999999995

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.1e-35  Score=319.46  Aligned_cols=242  Identities=20%  Similarity=0.238  Sum_probs=205.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP  187 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~  187 (677)
                      .+++||.|+..|+.++|++|++.|+ +++..+..|.||||+|+ ..|+.+++++|+++|++++..+..            
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~-~~n~~~~~g~tpL~~A~-~~~~~~~v~~Ll~~ga~~~~~~~~------------   67 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGI-NPNFEIYDGISPIKLAM-KFRDSEAIKLLMKHGAIPDVKYPD------------   67 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCC-CCCccCCCCCCHHHHHH-HcCCHHHHHHHHhCCCCccccCCC------------
Confidence            4688999999999999999999987 45567778999999985 779999999999999988755332            


Q ss_pred             hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790          188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH  267 (677)
Q Consensus       188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~  267 (677)
                             +.||||.|+..|+.++|++|++.|+++.+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus        68 -------~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh  140 (413)
T PHA02875         68 -------IESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLH  140 (413)
T ss_pred             -------cccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence                   3689999999999999999999999876777788999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchH
Q 005790          268 IAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTA  347 (677)
Q Consensus       268 ~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~Tp  347 (677)
                      +|+..|+.+++++|+++|+ +                                                ++.+|..|.||
T Consensus       141 ~A~~~~~~~~v~~Ll~~g~-~------------------------------------------------~~~~d~~g~Tp  171 (413)
T PHA02875        141 LAVMMGDIKGIELLIDHKA-C------------------------------------------------LDIEDCCGCTP  171 (413)
T ss_pred             HHHHcCCHHHHHHHHhcCC-C------------------------------------------------CCCCCCCCCCH
Confidence            9999999999999998873 2                                                44556778888


Q ss_pred             HHHHHhCCCcHHHHHHHhhCCCCCccccCCCCC-cHHHHHhhCCCCchHHHHHHHHHHcCCCCCCC---cccCCchHHHH
Q 005790          348 LHMAITGNVHLELVQLLMSAPSINVNVRDNDGM-TTLDLLKQRPQSASSDILIRHLISAGGIFGCQ---DYSARRAIASH  423 (677)
Q Consensus       348 Lh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~-TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~---d~~G~T~L~~a  423 (677)
                      ||+|+..+ +.+++++|++ .|+++|..+..|. ||+|+|+..++.+    ++++|+++|+|+|..   +..+.||++..
T Consensus       172 L~~A~~~g-~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~~~~~~~~~~t~l~~~  245 (413)
T PHA02875        172 LIIAMAKG-DIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNIMFMIEGEECTILDMI  245 (413)
T ss_pred             HHHHHHcC-CHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcchHhhcCCCchHHHHHH
Confidence            88888877 8888888888 8888888877764 7788888888876    688888888888765   56677888765


Q ss_pred             HH
Q 005790          424 IK  425 (677)
Q Consensus       424 l~  425 (677)
                      ..
T Consensus       246 ~~  247 (413)
T PHA02875        246 CN  247 (413)
T ss_pred             Hh
Confidence            54

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.5e-35  Score=325.78  Aligned_cols=272  Identities=20%  Similarity=0.192  Sum_probs=224.9

Q ss_pred             hhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchh
Q 005790          102 LIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEE  181 (677)
Q Consensus       102 ~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~  181 (677)
                      +..+..+.||||+||..|+.++|++|+++|+ +++..+..|.||||+|| ..|+.+++++|++.+.+.+..         
T Consensus        31 ~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~ga-dvn~~d~~g~TpLh~A~-~~g~~~~v~~Ll~~~~~~~~~---------   99 (477)
T PHA02878         31 TSASLIPFIPLHQAVEARNLDVVKSLLTRGH-NVNQPDHRDLTPLHIIC-KEPNKLGMKEMIRSINKCSVF---------   99 (477)
T ss_pred             CcccccCcchHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH-HCccHhHHHHHHHHHhccccc---------
Confidence            3345578899999999999999999999997 66788999999999985 779999999999987644321         


Q ss_pred             hhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHh--CCHHHHHHHHhcCCCCCCCC
Q 005790          182 HIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGR--GQVEVVKDLIASFDIINSTD  259 (677)
Q Consensus       182 ~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~--g~~eivk~Ll~~ga~in~~d  259 (677)
                                  .+.++|+.|+..++.+++++|+..+.+.....+   ...+..+...  .+.+++++|+++|++++..+
T Consensus       100 ------------~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~  164 (477)
T PHA02878        100 ------------YTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGADINMKD  164 (477)
T ss_pred             ------------cchhhHHHHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCCCCccC
Confidence                        125799999999999999999988654311111   1111111122  23569999999999999999


Q ss_pred             CC-CCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhh
Q 005790          260 HQ-GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIIN  338 (677)
Q Consensus       260 ~~-g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in  338 (677)
                      .. |.||||+|+..|+.+++++|++.|+ +                                                ++
T Consensus       165 ~~~g~tpLh~A~~~~~~~iv~~Ll~~ga-d------------------------------------------------~n  195 (477)
T PHA02878        165 RHKGNTALHYATENKDQRLTELLLSYGA-N------------------------------------------------VN  195 (477)
T ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHHCCC-C------------------------------------------------CC
Confidence            88 9999999999999999999998883 2                                                55


Q ss_pred             ccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhC-CCCchHHHHHHHHHHcCCCCCCCcc-cC
Q 005790          339 AKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQR-PQSASSDILIRHLISAGGIFGCQDY-SA  416 (677)
Q Consensus       339 ~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~-~~~~~~~~lv~~Ll~~Gadin~~d~-~G  416 (677)
                      .+|..|.||||+|+..+ +.+++++|++ .|+++|.+|..|.||||+|+.. ++.+    ++++|+++|+++|.++. .|
T Consensus       196 ~~d~~g~tpLh~A~~~~-~~~iv~~Ll~-~ga~in~~d~~g~TpLh~A~~~~~~~~----iv~~Ll~~gadvn~~~~~~g  269 (477)
T PHA02878        196 IPDKTNNSPLHHAVKHY-NKPIVHILLE-NGASTDARDKCGNTPLHISVGYCKDYD----ILKLLLEHGVDVNAKSYILG  269 (477)
T ss_pred             CcCCCCCCHHHHHHHhC-CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhcCCHH----HHHHHHHcCCCCCccCCCCC
Confidence            56788999999999988 9999999999 9999999999999999999976 5555    79999999999999986 89


Q ss_pred             CchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCCCCCCCCCCCCC
Q 005790          417 RRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMS  466 (677)
Q Consensus       417 ~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~~~g~t~~~~~  466 (677)
                      .||||.|..            ..+++++|+++|||++..+..|.|+...+
T Consensus       270 ~TpLh~A~~------------~~~~v~~Ll~~gadin~~d~~g~TpL~~A  307 (477)
T PHA02878        270 LTALHSSIK------------SERKLKLLLEYGADINSLNSYKLTPLSSA  307 (477)
T ss_pred             CCHHHHHcc------------CHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            999999832            15789999999999999999999876554

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.2e-34  Score=315.13  Aligned_cols=394  Identities=12%  Similarity=0.044  Sum_probs=282.6

Q ss_pred             cHHHHHHHcCCHHH--HHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHH-HHHHHhhhhcCCCCchhh
Q 005790           28 SPIDWAAANGHYDL--VRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVA-RKLFLECKSKNGKNSLIR  104 (677)
Q Consensus        28 TpL~~Aa~~G~~di--V~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v-~~lLl~~~~~~g~~~~~~  104 (677)
                      +.|+-.|..=+.+.  .+.||+.|+++.             ..|.+.|||+.-....+..+ +++++.    -+..++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~   67 (631)
T PHA02792          5 KILYDSCKTFNIDACSAQSLIESGANPL-------------YEYDGETPLKAYVTKKNNNIKNDVVIL----LLSSVDYK   67 (631)
T ss_pred             hHHHhHhhccchhHHHHHHHHHcCCCcc-------------cccCCCccHHHHHhhhhhhHHHHHHHH----HHhCCCcC
Confidence            55666666655554  578999999974             25788899998876666332 234433    34456667


Q ss_pred             cCCCChHHHH-HHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCc-----
Q 005790          105 AGYGGWLLYT-AASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGE-----  178 (677)
Q Consensus       105 d~~G~t~L~~-Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~-----  178 (677)
                      +-+|.+++|+ |...|++|+|++|+++|+ +++..+..+.||+++|+...++.||+++|+++||++......|-.     
T Consensus        68 n~~~~~~~~~~~s~n~~lElvk~LI~~GA-dvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~  146 (631)
T PHA02792         68 NINDFDIFEYLCSDNIDIELLKLLISKGL-EINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQ  146 (631)
T ss_pred             ccCCccHHHHHHHhcccHHHHHHHHHcCC-CcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhh
Confidence            7778889975 667899999999999998 566677778999999987789999999999999997654443332     


Q ss_pred             --------chhh----hhcchhhhhhhccchHHHHHHhcC-------CHHHHHHHHhcCCCccccCCCCCCcHHHHHHHh
Q 005790          179 --------LEEH----IEEIPSVYKWEMMNRAVHAAARGG-------NLKILKELLENCTDVLTYRDKQGSTILHAAAGR  239 (677)
Q Consensus       179 --------~~~~----~~~~~~~~~~~~~~t~Lh~A~~~g-------~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~  239 (677)
                              +.+.    ......++++..|+||||+|+..+       +.|+++.||++|+++ +..|..|.||||+|+.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~  225 (631)
T PHA02792        147 ITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDK  225 (631)
T ss_pred             cccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHc
Confidence                    1111    011122467778999999999999       899999999999999 77888999999999999


Q ss_pred             C--CHHHHHHHHhcCCCCCCCCCCCCcHHHHHH--Hc----C--CHHHHHHHHHhCCC-C-ccccCCC-C-Cchhhhhhh
Q 005790          240 G--QVEVVKDLIASFDIINSTDHQGNTPLHIAA--YR----G--QPAVVEALILASPS-M-ISVKNTS-G-ETFLHSAVS  305 (677)
Q Consensus       240 g--~~eivk~Ll~~ga~in~~d~~g~tpL~~A~--~~----g--~~~iv~~LL~~g~~-~-~~~~~~~-g-~tpLh~A~~  305 (677)
                      .  ..|++++|++.-.+.    .+-...|+.-.  +.    +  +..+|..||+.+.. + ....... . .+..-.-.+
T Consensus       226 ~~i~~ei~~~L~~~~~~~----~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~  301 (631)
T PHA02792        226 CDIKREIFDALFDSNYSG----NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKR  301 (631)
T ss_pred             ccchHHHHHHHHhccccc----cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHH
Confidence            9  889999999841111    11122222221  22    1  24489999886531 1 1111111 1 111111111


Q ss_pred             cCchHHHHHh--------hHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCC
Q 005790          306 GFQTYAFRRL--------DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN  377 (677)
Q Consensus       306 ~~~~~~~~~L--------~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~  377 (677)
                      ..  ..++.+        .-..+++++|++.|.       +........+++.|+..+ +.++|++|++ +|||+|.+|.
T Consensus       302 ~~--~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga-------~~~r~~~~n~~~~Aa~~g-n~eIVelLIs-~GADIN~kD~  370 (631)
T PHA02792        302 YT--DSIQDLLSEYVSYHTVYINVIKCMIDEGA-------TLYRFKHINKYFQKFDNR-DPKVVEYILK-NGNVVVEDDD  370 (631)
T ss_pred             Hh--HHHHHHHHHHHhcCCccHHHHHHHHHCCC-------ccccCCcchHHHHHHHcC-CHHHHHHHHH-cCCchhhhcC
Confidence            11  222222        346889999999883       221233566799998878 9999999999 9999999998


Q ss_pred             CC--CcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCC
Q 005790          378 DG--MTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSD  455 (677)
Q Consensus       378 ~G--~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~  455 (677)
                      +|  .||||+|+.....+ +..++++|+++|||+|.+|..|+||||+|+....          .+++++|+++|||++.+
T Consensus       371 ~g~~~TpLh~A~~n~~~~-v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n----------~eivelLLs~GADIN~k  439 (631)
T PHA02792        371 NIINIMPLFPTLSIHESD-VLSILKLCKPYIDDINKIDKHGRSILYYCIESHS----------VSLVEWLIDNGADINIT  439 (631)
T ss_pred             CCCChhHHHHHHHhccHh-HHHHHHHHHhcCCccccccccCcchHHHHHHcCC----------HHHHHHHHHCCCCCCCc
Confidence            75  69999977766543 4457899999999999999999999999987433          78999999999999999


Q ss_pred             CCCCCCCCCCC
Q 005790          456 GNANSGSGGMS  466 (677)
Q Consensus       456 ~~~g~t~~~~~  466 (677)
                      +..|.|+...+
T Consensus       440 D~~G~TpL~~A  450 (631)
T PHA02792        440 TKYGSTCIGIC  450 (631)
T ss_pred             CCCCCCHHHHH
Confidence            99999877654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.2e-35  Score=325.27  Aligned_cols=282  Identities=16%  Similarity=0.148  Sum_probs=153.0

Q ss_pred             HHHHHHHHHcCCCccccCCCCCCCHHH-HHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHH
Q 005790          121 LGFVKQLLDKNPLLVFGEGEYGVTDIF-YAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAV  199 (677)
Q Consensus       121 ~eivk~LL~~g~~~~~~~~~~g~tpL~-~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L  199 (677)
                      .++|+.|++.+. +...  ..+.|+++ +.....++.++|++|+++|++++..+..|                   .|||
T Consensus        18 ~~~v~~ll~~~~-~~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g-------------------~TpL   75 (489)
T PHA02798         18 LSTVKLLIKSCN-PNEI--VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEY-------------------STPL   75 (489)
T ss_pred             HHHHHHHHhcCC-hhhh--cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCC-------------------CChH
Confidence            455666665432 1111  23444444 22222335566666666666655444332                   4566


Q ss_pred             HHHHhc-----CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC---CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 005790          200 HAAARG-----GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRG---QVEVVKDLIASFDIINSTDHQGNTPLHIAAY  271 (677)
Q Consensus       200 h~A~~~-----g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g---~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~  271 (677)
                      |.|+..     +..+++++|+++|+++ +..|..|.||||+|+..+   +.+++++|+++|++++..|..|.||||+|++
T Consensus        76 ~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~  154 (489)
T PHA02798         76 CTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQ  154 (489)
T ss_pred             HHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHH
Confidence            655542     4456666666666665 555666666666666553   4566666666666666666666666666666


Q ss_pred             cCC---HHHHHHHHHhCCCCccccC-CCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchH
Q 005790          272 RGQ---PAVVEALILASPSMISVKN-TSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTA  347 (677)
Q Consensus       272 ~g~---~~iv~~LL~~g~~~~~~~~-~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~Tp  347 (677)
                      .++   .+++++|++.| ++++..+ ..|.||||.++..+..      ..+.+++++|++.|     ++++..+..|.|+
T Consensus       155 ~~~~~~~~vv~~Ll~~g-adin~~~~~~~~t~Lh~~~~~~~~------~~~~~ivk~Li~~G-----a~i~~~~~~~~~~  222 (489)
T PHA02798        155 SNHHIDIEIIKLLLEKG-VDINTHNNKEKYDTLHCYFKYNID------RIDADILKLFVDNG-----FIINKENKSHKKK  222 (489)
T ss_pred             cCCcchHHHHHHHHHhC-CCcccccCcCCCcHHHHHHHhccc------cCCHHHHHHHHHCC-----CCcccCCccccch
Confidence            555   56666666665 4444442 3455666655542100      12345555555544     3355555555555


Q ss_pred             HHH-------HHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchH
Q 005790          348 LHM-------AITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAI  420 (677)
Q Consensus       348 Lh~-------A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L  420 (677)
                      ++.       +...+ +.+++++|+.  |+|+|.+|..|+||||+|+..++.+    ++++|+++|||+|.+|..|+|||
T Consensus       223 ~~~~l~~l~~~~~~~-~~~i~~~l~~--~~dvN~~d~~G~TPL~~A~~~~~~~----~v~~LL~~GAdin~~d~~G~TpL  295 (489)
T PHA02798        223 FMEYLNSLLYDNKRF-KKNILDFIFS--YIDINQVDELGFNPLYYSVSHNNRK----IFEYLLQLGGDINIITELGNTCL  295 (489)
T ss_pred             HHHHHHHHHhhcccc-hHHHHHHHHh--cCCCCCcCcCCccHHHHHHHcCcHH----HHHHHHHcCCcccccCCCCCcHH
Confidence            541       22222 5556655554  4666666666666666666666654    46666666666666666666666


Q ss_pred             HHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCC
Q 005790          421 ASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSS  454 (677)
Q Consensus       421 ~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~  454 (677)
                      +.|+....          .++++.||++|++++.
T Consensus       296 ~~A~~~~~----------~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        296 FTAFENES----------KFIFNSILNKKPNKNT  319 (489)
T ss_pred             HHHHHcCc----------HHHHHHHHccCCCHHH
Confidence            66655322          4566666666666653

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.1e-34  Score=312.53  Aligned_cols=242  Identities=21%  Similarity=0.201  Sum_probs=220.9

Q ss_pred             cCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhc
Q 005790           26 YASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRA  105 (677)
Q Consensus        26 g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d  105 (677)
                      .+++||.|+..|+.++|++|+++|++++..            ...+.||||.|+..++.+++++|++    .|++++..+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~------------~~~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~~   65 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFE------------IYDGISPIKLAMKFRDSEAIKLLMK----HGAIPDVKY   65 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCcc------------CCCCCCHHHHHHHcCCHHHHHHHHh----CCCCccccC
Confidence            358999999999999999999999998753            4578999999999999999999999    899999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      ..+.||||+|+..|+.++|++|++.++......+..|.||||+|| ..|+.+++++|+++|++++..+..          
T Consensus        66 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~-~~~~~~iv~~Ll~~gad~~~~~~~----------  134 (413)
T PHA02875         66 PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLAT-ILKKLDIMKLLIARGADPDIPNTD----------  134 (413)
T ss_pred             CCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHH-HhCCHHHHHHHHhCCCCCCCCCCC----------
Confidence            999999999999999999999999998776777788999999986 679999999999999999876544          


Q ss_pred             chhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCC-Cc
Q 005790          186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG-NT  264 (677)
Q Consensus       186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g-~t  264 (677)
                               |.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..+..| .|
T Consensus       135 ---------g~tpLh~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t  204 (413)
T PHA02875        135 ---------KFSPLHLAVMMGDIKGIELLIDHKACL-DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVA  204 (413)
T ss_pred             ---------CCCHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCch
Confidence                     379999999999999999999999998 7899999999999999999999999999999999998887 48


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCcccc---CCCCCchhhhhhh
Q 005790          265 PLHIAAYRGQPAVVEALILASPSMISVK---NTSGETFLHSAVS  305 (677)
Q Consensus       265 pL~~A~~~g~~~iv~~LL~~g~~~~~~~---~~~g~tpLh~A~~  305 (677)
                      |+|+|+..|+.+++++|+++| ++++..   +..+.|||+.++.
T Consensus       205 ~l~~A~~~~~~~iv~~Ll~~g-ad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        205 ALCYAIENNKIDIVRLFIKRG-ADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-cCcchHhhcCCCchHHHHHHHh
Confidence            999999999999999999999 556654   6678899998764

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1e-33  Score=290.66  Aligned_cols=234  Identities=16%  Similarity=0.100  Sum_probs=205.7

Q ss_pred             cCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHH
Q 005790           36 NGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTA  115 (677)
Q Consensus        36 ~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~A  115 (677)
                      .++.+++++|+++|++.              .+..+.||||+|+..++.+++++|++    .|++++..+  |.||||+|
T Consensus         9 ~~~~~~~~~Lis~~a~~--------------~D~~G~TpLh~Aa~~g~~eiv~~Ll~----~ga~~n~~d--~~TpLh~A   68 (284)
T PHA02791          9 WKSKQLKSFLSSKDAFK--------------ADVHGHSALYYAIADNNVRLVCTLLN----AGALKNLLE--NEFPLHQA   68 (284)
T ss_pred             cCHHHHHHHHHhCCCCC--------------CCCCCCcHHHHHHHcCCHHHHHHHHH----CcCCCcCCC--CCCHHHHH
Confidence            46899999999999863              45679999999999999999999999    888888765  68999999


Q ss_pred             HHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhcc
Q 005790          116 ASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMM  195 (677)
Q Consensus       116 a~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (677)
                      +..|+.++|++|++.|+ +++..+..|.||||+|| ..|+.+++++|+++|++++..+..+.                  
T Consensus        69 a~~g~~eiV~lLL~~Ga-dvn~~d~~G~TpLh~Aa-~~g~~eivk~Ll~~gadin~~~~~g~------------------  128 (284)
T PHA02791         69 ATLEDTKIVKILLFSGM-DDSQFDDKGNTALYYAV-DSGNMQTVKLFVKKNWRLMFYGKTGW------------------  128 (284)
T ss_pred             HHCCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHCCCCcCccCCCCC------------------
Confidence            99999999999999997 56778899999999996 77999999999999999886654431                  


Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH-HHHHHHcCC
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP-LHIAAYRGQ  274 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp-L~~A~~~g~  274 (677)
                      .||||+|+..|+.++|++|++++++..+  ...|.||||+|+..|+.+++++|+++|++++..|..|.|| ||+|+..|+
T Consensus       129 ~TpL~~Aa~~g~~eivk~LL~~~~~~~d--~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        129 KTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD  206 (284)
T ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCcccc--cccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCC
Confidence            4899999999999999999999876422  1358999999999999999999999999999999999987 999999999


Q ss_pred             HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHccc
Q 005790          275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQ  329 (677)
Q Consensus       275 ~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~  329 (677)
                      .+++++|+++| ++++.+|..+ ++|                ++.|++++|+++.
T Consensus       207 ~e~v~lLl~~G-a~in~~~~~~-~~l----------------~~~e~~~~ll~~~  243 (284)
T PHA02791        207 LEMLQALFKYD-INIYSVNLEN-VLL----------------DDAEIAKMIIEKH  243 (284)
T ss_pred             HHHHHHHHHCC-CCCccCcccC-ccC----------------CCHHHHHHHHHhh
Confidence            99999999999 7789888854 554                4567888998876

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.9e-34  Score=317.33  Aligned_cols=288  Identities=16%  Similarity=0.150  Sum_probs=236.6

Q ss_pred             HHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHH--cCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHh----cCCHH
Q 005790           84 KVARKLFLECKSKNGKNSLIRAGYGGWLLYTAAS--AGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAAR----SKNCD  157 (677)
Q Consensus        84 ~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~--~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~----~g~~e  157 (677)
                      .+++++|++    .+ +++.. ..|.|+++.+..  .++.++|++|+++|+ +++..+..|.||||+++..    .++.+
T Consensus        18 ~~~v~~ll~----~~-~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Ga-dvn~~d~~g~TpL~~~~~n~~~~~~~~~   90 (489)
T PHA02798         18 LSTVKLLIK----SC-NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGA-NVNGLDNEYSTPLCTILSNIKDYKHMLD   90 (489)
T ss_pred             HHHHHHHHh----cC-Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCC-CCCCCCCCCCChHHHHHHhHHhHHhHHH
Confidence            467777876    43 34433 346677664444  458999999999998 6778889999999998532    36789


Q ss_pred             HHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcC---CHHHHHHHHhcCCCccccCCCCCCcHHH
Q 005790          158 VFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGG---NLKILKELLENCTDVLTYRDKQGSTILH  234 (677)
Q Consensus       158 vv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g---~~eivk~LL~~ga~~~~~~d~~g~TpL~  234 (677)
                      ++++|+++|+++|..+..|                   .||||+|+..+   +.+++++|+++|+++ +..|..|.||||
T Consensus        91 iv~~Ll~~GadiN~~d~~G-------------------~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~  150 (489)
T PHA02798         91 IVKILIENGADINKKNSDG-------------------ETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQ  150 (489)
T ss_pred             HHHHHHHCCCCCCCCCCCc-------------------CcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHH
Confidence            9999999999999876654                   79999999876   789999999999999 889999999999


Q ss_pred             HHHHhCC---HHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHc----CCHHHHHHHHHhCCCCccccCCCCCchhhhhhhc
Q 005790          235 AAAGRGQ---VEVVKDLIASFDIINSTD-HQGNTPLHIAAYR----GQPAVVEALILASPSMISVKNTSGETFLHSAVSG  306 (677)
Q Consensus       235 ~A~~~g~---~eivk~Ll~~ga~in~~d-~~g~tpL~~A~~~----g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~  306 (677)
                      +|+..++   .+++++|+++|++++..+ ..|.||||.++..    ++.+++++|+++| ++++..+..|.++++.....
T Consensus       151 ~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~G-a~i~~~~~~~~~~~~~~l~~  229 (489)
T PHA02798        151 VYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNG-FIINKENKSHKKKFMEYLNS  229 (489)
T ss_pred             HHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCC-CCcccCCccccchHHHHHHH
Confidence            9999998   999999999999999885 5789999998764    4899999999999 67888888888887722110


Q ss_pred             CchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHH
Q 005790          307 FQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLL  386 (677)
Q Consensus       307 ~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A  386 (677)
                      -   .........+++.+|+.+      +++|.+|..|.||||+|+..+ +.+++++||+ .|||+|.+|..|+||||+|
T Consensus       230 l---~~~~~~~~~~i~~~l~~~------~dvN~~d~~G~TPL~~A~~~~-~~~~v~~LL~-~GAdin~~d~~G~TpL~~A  298 (489)
T PHA02798        230 L---LYDNKRFKKNILDFIFSY------IDINQVDELGFNPLYYSVSHN-NRKIFEYLLQ-LGGDINIITELGNTCLFTA  298 (489)
T ss_pred             H---HhhcccchHHHHHHHHhc------CCCCCcCcCCccHHHHHHHcC-cHHHHHHHHH-cCCcccccCCCCCcHHHHH
Confidence            0   000013446677776653      459999999999999999988 9999999999 9999999999999999999


Q ss_pred             hhCCCCchHHHHHHHHHHcCCCCCCCcc
Q 005790          387 KQRPQSASSDILIRHLISAGGIFGCQDY  414 (677)
Q Consensus       387 ~~~~~~~~~~~lv~~Ll~~Gadin~~d~  414 (677)
                      +..++.+    +++.|+++|++++....
T Consensus       299 ~~~~~~~----iv~~lL~~~~~~~~i~~  322 (489)
T PHA02798        299 FENESKF----IFNSILNKKPNKNTISY  322 (489)
T ss_pred             HHcCcHH----HHHHHHccCCCHHHHHH
Confidence            9999977    78899999999886543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=8.7e-34  Score=289.67  Aligned_cols=219  Identities=26%  Similarity=0.302  Sum_probs=186.1

Q ss_pred             HHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCc--------hh
Q 005790           32 WAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNS--------LI  103 (677)
Q Consensus        32 ~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~--------~~  103 (677)
                      -|++.|.+..+..|+-...+..       -...+..+.++.+||..|+++|+..++++|++.   .++++        +-
T Consensus        10 naa~~g~l~~l~~ll~~~s~~e-------i~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~---~~a~~e~~GsV~FDg   79 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEE-------IISLIGEVQNGGTPLLIAARNGHADVVEYLLEH---CRASPEQGGSVRFDG   79 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHH-------HHHHhccccCCCCceeeehhcCcHHHHHHHHHH---hcCCccCCceEEeCC
Confidence            6888888888888876543321       123345667889999999999999999999982   23333        22


Q ss_pred             hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790          104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI  183 (677)
Q Consensus       104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~  183 (677)
                      ....|-+||..|+..||+++|+.|+++|+ .+|......-|||--|| .-|++++|++|+++|+||+..+..|       
T Consensus        80 e~IegappLWaAsaAGHl~vVk~L~~~ga-~VN~tT~TNStPLraAC-fDG~leivKyLvE~gad~~IanrhG-------  150 (615)
T KOG0508|consen   80 ETIEGAPPLWAASAAGHLEVVKLLLRRGA-SVNDTTRTNSTPLRAAC-FDGHLEIVKYLVEHGADPEIANRHG-------  150 (615)
T ss_pred             cccCCCchhhHHhccCcHHHHHHHHHhcC-ccccccccCCccHHHHH-hcchhHHHHHHHHcCCCCcccccCC-------
Confidence            33468899999999999999999999996 56666666779988775 7799999999999999999887765       


Q ss_pred             hcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC
Q 005790          184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN  263 (677)
Q Consensus       184 ~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~  263 (677)
                                  .|.||+|+..||.+|+++|++.|+|+ +.++..|.|+||.|++.|+++++++|+.+|+.++. |..|.
T Consensus       151 ------------hTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~Gm  216 (615)
T KOG0508|consen  151 ------------HTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGM  216 (615)
T ss_pred             ------------CeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCC
Confidence                        68999999999999999999999999 88999999999999999999999999999998864 66699


Q ss_pred             cHHHHHHHcCCHHHHHHHHH
Q 005790          264 TPLHIAAYRGQPAVVEALIL  283 (677)
Q Consensus       264 tpL~~A~~~g~~~iv~~LL~  283 (677)
                      |||..|+..|+.++|++|++
T Consensus       217 tPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  217 TPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             chHHHHhhhcchHHHHHHhc
Confidence            99999999999999999994

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-33  Score=254.28  Aligned_cols=178  Identities=31%  Similarity=0.344  Sum_probs=165.8

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhc-CCCcccccccCCcchhhh
Q 005790          105 AGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDF-AVSPRFLTAKGGELEEHI  183 (677)
Q Consensus       105 d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~-Gad~~~~~~~~~~~~~~~  183 (677)
                      |.+|+|||||||+.|+.++|.+|+..-...++..|..||||||+|| ..|+.++|+-|+.+ |+|+|..+..|       
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~-s~g~~evVk~Ll~r~~advna~tn~G-------  106 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA-SNGNDEVVKELLNRSGADVNATTNGG-------  106 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhh-hcCcHHHHHHHhcCCCCCcceecCCC-------
Confidence            4489999999999999999999997655677888999999999996 77999999999999 99999887765       


Q ss_pred             hcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC
Q 005790          184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN  263 (677)
Q Consensus       184 ~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~  263 (677)
                                  +|+||+|+..|.+||+++|+++|+.+ +.+|..|.||||.|+.-|.++++++|+..|+.+|..|..|+
T Consensus       107 ------------~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~  173 (226)
T KOG4412|consen  107 ------------QTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGF  173 (226)
T ss_pred             ------------cceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCc
Confidence                        79999999999999999999999998 89999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790          264 TPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS  305 (677)
Q Consensus       264 tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~  305 (677)
                      ||||.|...|+.++..+|+++| +++...|+.| ||+..|+-
T Consensus       174 TpL~~al~e~~~d~a~lLV~~g-Ad~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  174 TPLHHALAEGHPDVAVLLVRAG-ADTDREDKEG-TALRIACN  213 (226)
T ss_pred             cHHHHHHhccCchHHHHHHHhc-cceeeccccC-chHHHHHH
Confidence            9999999999999999999999 8899999988 99888874

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-33  Score=253.80  Aligned_cols=206  Identities=27%  Similarity=0.342  Sum_probs=185.6

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCccccCC-CCCCcHHHHHHHhCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHHcC
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTYRD-KQGSTILHAAAGRGQVEVVKDLI-ASFDIINSTDHQGNTPLHIAAYRG  273 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d-~~g~TpL~~A~~~g~~eivk~Ll-~~ga~in~~d~~g~tpL~~A~~~g  273 (677)
                      .++.+.++......-|+.|++....-.+.++ .+|+|||||||..|+.++|.+|+ +.+..+|.+|..|+||||+|+..|
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g   83 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNG   83 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcC
Confidence            4678888888888889999998884445555 49999999999999999999999 678889999999999999999999


Q ss_pred             CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790          274 QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT  353 (677)
Q Consensus       274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~  353 (677)
                      +.++|+.|+.+..++++..+..|+|+||||+.          .+..++..+|++++     +.++.+|..|.||||.|+.
T Consensus        84 ~~evVk~Ll~r~~advna~tn~G~T~LHyAag----------K~r~eIaqlLle~g-----a~i~~kD~~~qtplHRAAa  148 (226)
T KOG4412|consen   84 NDEVVKELLNRSGADVNATTNGGQTCLHYAAG----------KGRLEIAQLLLEKG-----ALIRIKDKQGQTPLHRAAA  148 (226)
T ss_pred             cHHHHHHHhcCCCCCcceecCCCcceehhhhc----------CChhhHHHHHHhcC-----CCCcccccccCchhHHHHh
Confidence            99999999999668999999999999999999          67788888888877     5599999999999999999


Q ss_pred             CCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHH
Q 005790          354 GNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASH  423 (677)
Q Consensus       354 ~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~a  423 (677)
                      -| .++++++|+. .|+.+|.+|..|+||||.|...++.+    ...+|+++||+++..|+.| ||+-.+
T Consensus       149 vG-klkvie~Li~-~~a~~n~qDk~G~TpL~~al~e~~~d----~a~lLV~~gAd~~~edke~-t~~~~a  211 (226)
T KOG4412|consen  149 VG-KLKVIEYLIS-QGAPLNTQDKYGFTPLHHALAEGHPD----VAVLLVRAGADTDREDKEG-TALRIA  211 (226)
T ss_pred             cc-chhhHHHHHh-cCCCCCcccccCccHHHHHHhccCch----HHHHHHHhccceeeccccC-chHHHH
Confidence            88 9999999999 99999999999999999998888888    5778889999999999988 996544

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-31  Score=293.02  Aligned_cols=365  Identities=13%  Similarity=0.091  Sum_probs=264.9

Q ss_pred             cccCcHHHHHHHcCCH-HHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHH-HhhchHHHHHHHHhhhhcCCCCc
Q 005790           24 WWYASPIDWAAANGHY-DLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDV-AKCRSKVARKLFLECKSKNGKNS  101 (677)
Q Consensus        24 ~~g~TpL~~Aa~~G~~-diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A-~~~~~~~v~~lLl~~~~~~g~~~  101 (677)
                      |.+.||||.=....|. .=++.++..|-.++.            ...++.+++++. ..+++.+++++|+.    +|+|+
T Consensus        35 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~n~~~~~~~~~~~s~n~~lElvk~LI~----~GAdv   98 (631)
T PHA02792         35 YDGETPLKAYVTKKNNNIKNDVVILLLSSVDY------------KNINDFDIFEYLCSDNIDIELLKLLIS----KGLEI   98 (631)
T ss_pred             cCCCccHHHHHhhhhhhHHHHHHHHHHhCCCc------------CccCCccHHHHHHHhcccHHHHHHHHH----cCCCc
Confidence            5577999988665552 223344443333331            233466677665 45778899999999    89999


Q ss_pred             hhhcCCCChHHHHHHH-cCCHHHHHHHHHcCCCc-----------------------------------cccCCCCCCCH
Q 005790          102 LIRAGYGGWLLYTAAS-AGDLGFVKQLLDKNPLL-----------------------------------VFGEGEYGVTD  145 (677)
Q Consensus       102 ~~~d~~G~t~L~~Aa~-~g~~eivk~LL~~g~~~-----------------------------------~~~~~~~g~tp  145 (677)
                      +.++..|.+|||+|+. .+++|+|++||++|++.                                   ++..+..|.||
T Consensus        99 N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~  178 (631)
T PHA02792         99 NSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTV  178 (631)
T ss_pred             ccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCch
Confidence            9999988999999966 69999999999999741                                   12345669999


Q ss_pred             HHHHHHhcC-------CHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcC--CHHHHHHHHh
Q 005790          146 IFYAAARSK-------NCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGG--NLKILKELLE  216 (677)
Q Consensus       146 L~~AA~~~g-------~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g--~~eivk~LL~  216 (677)
                      ||+++ .++       +.|++++|+++|++++..+..                   |.||||+|+...  ..|++++|++
T Consensus       179 L~~~i-~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~-------------------g~t~l~~~~~~~~i~~ei~~~L~~  238 (631)
T PHA02792        179 LYYYI-ITRSQDGYATSLDVINYLISHEKEMRYYTYR-------------------EHTTLYYYVDKCDIKREIFDALFD  238 (631)
T ss_pred             HHHHH-hhCCcccccCCHHHHHHHHhCCCCcCccCCC-------------------CChHHHHHHHcccchHHHHHHHHh
Confidence            99996 556       799999999999999877665                   379999999999  8999999998


Q ss_pred             cCCCccccCCCCCCcHHHHHH--Hh----C--CHHHHHHHHhcCCC--C----CCCCCC-------------CCcHHHHH
Q 005790          217 NCTDVLTYRDKQGSTILHAAA--GR----G--QVEVVKDLIASFDI--I----NSTDHQ-------------GNTPLHIA  269 (677)
Q Consensus       217 ~ga~~~~~~d~~g~TpL~~A~--~~----g--~~eivk~Ll~~ga~--i----n~~d~~-------------g~tpL~~A  269 (677)
                      . +..  ..+  -...|+.-.  ..    .  +..+|..|++.+..  +    ...+..             -+-.||.-
T Consensus       239 ~-~~~--~~~--~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Y  313 (631)
T PHA02792        239 S-NYS--GNE--LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEY  313 (631)
T ss_pred             c-ccc--ccc--hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHH
Confidence            4 221  111  123333222  11    1  24599999987662  1    111111             11345555


Q ss_pred             HHcC--CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCC--c
Q 005790          270 AYRG--QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDG--R  345 (677)
Q Consensus       270 ~~~g--~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G--~  345 (677)
                      ...+  +.+++++|+++|.. ..  .......++.|+.          .+..+++++|+++|     ++++.+|..|  .
T Consensus       314 l~~~~v~ieiIK~LId~Ga~-~~--r~~~~n~~~~Aa~----------~gn~eIVelLIs~G-----ADIN~kD~~g~~~  375 (631)
T PHA02792        314 VSYHTVYINVIKCMIDEGAT-LY--RFKHINKYFQKFD----------NRDPKVVEYILKNG-----NVVVEDDDNIINI  375 (631)
T ss_pred             HhcCCccHHHHHHHHHCCCc-cc--cCCcchHHHHHHH----------cCCHHHHHHHHHcC-----CchhhhcCCCCCh
Confidence            6666  78999999999954 32  2234556777877          56678888888776     5588888775  6


Q ss_pred             hHHHHHHhCCCcH---HHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHH
Q 005790          346 TALHMAITGNVHL---ELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIAS  422 (677)
Q Consensus       346 TpLh~A~~~~~~~---eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~  422 (677)
                      ||||+|+..+ ..   +++++|++ +|+|+|.+|..|.||||+|+..++.+    ++++|+++|+++|.+|..|+|||+.
T Consensus       376 TpLh~A~~n~-~~~v~~IlklLIs-~GADIN~kD~~G~TPLh~Aa~~~n~e----ivelLLs~GADIN~kD~~G~TpL~~  449 (631)
T PHA02792        376 MPLFPTLSIH-ESDVLSILKLCKP-YIDDINKIDKHGRSILYYCIESHSVS----LVEWLIDNGADINITTKYGSTCIGI  449 (631)
T ss_pred             hHHHHHHHhc-cHhHHHHHHHHHh-cCCccccccccCcchHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            9999987754 43   46899999 99999999999999999999999977    7899999999999999999999999


Q ss_pred             HHHHhCCCCCCCCccchhhHHHHHHcCCCCC
Q 005790          423 HIKMLGNGSSPGTSFRISDTEIFLYTGIDVS  453 (677)
Q Consensus       423 al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~  453 (677)
                      |................+++++||++|.++.
T Consensus       450 A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        450 CVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            9874332221111222567999999998875

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1.5e-30  Score=277.82  Aligned_cols=212  Identities=31%  Similarity=0.409  Sum_probs=178.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP  187 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~  187 (677)
                      -.+-++.|+..|.++.|+.|++.....++..|.+|.|+||||| .+++.+++++|+++|+++|......           
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAA-iNNrl~v~r~li~~gadvn~~gG~l-----------  111 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAA-INNRLDVARYLISHGADVNAIGGVL-----------  111 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHH-HcCcHHHHHHHHHcCCCccccCCCC-----------
Confidence            3567899999999999999999944577888899999999997 6699999999999999999876543           


Q ss_pred             hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790          188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH  267 (677)
Q Consensus       188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~  267 (677)
                             +.||||+|+++|++.+|++|+++|+++ +.+|.+|.+|||.|++.|+.-+|-+||.+|+++|.+|..|+||||
T Consensus       112 -------~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLm  183 (600)
T KOG0509|consen  112 -------GSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLM  183 (600)
T ss_pred             -------CCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHH
Confidence                   359999999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchH
Q 005790          268 IAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTA  347 (677)
Q Consensus       268 ~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~Tp  347 (677)
                      +|+..|+...+..||.-++. +...|                                               |..|.||
T Consensus       184 wAaykg~~~~v~~LL~f~a~-~~~~d-----------------------------------------------~~~g~Tp  215 (600)
T KOG0509|consen  184 WAAYKGFALFVRRLLKFGAS-LLLTD-----------------------------------------------DNHGNTP  215 (600)
T ss_pred             HHHHhcccHHHHHHHHhccc-ccccc-----------------------------------------------cccCCch
Confidence            99999998889999988843 32222                                               2567777


Q ss_pred             HHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhC
Q 005790          348 LHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQR  389 (677)
Q Consensus       348 Lh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~  389 (677)
                      ||+|+..| +..++.+|++ .|++.+.+|.+|.||+++|.+.
T Consensus       216 LHwa~~~g-N~~~v~Ll~~-g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  216 LHWAVVGG-NLTAVKLLLE-GGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHhcC-CcceEehhhh-cCCcccccccCCCCHHHHHHHh
Confidence            77777766 6776665555 6677777777777777777555

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2.8e-30  Score=275.71  Aligned_cols=208  Identities=26%  Similarity=0.306  Sum_probs=188.9

Q ss_pred             chHHHHHHhcCCHHHHHHHHhc-CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcC
Q 005790          196 NRAVHAAARGGNLKILKELLEN-CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD-HQGNTPLHIAAYRG  273 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~-ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d-~~g~tpL~~A~~~g  273 (677)
                      ..-++.|++.|.++.|+.|++. |.++ +..|.+|.|+||+|+.+++++++++|+++|+++|..+ .-+.||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v-~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESV-NNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCC-CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            4578899999999999999999 8888 7789999999999999999999999999999999998 66899999999999


Q ss_pred             CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790          274 QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT  353 (677)
Q Consensus       274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~  353 (677)
                      +..+|++|+++| ++++.+|.+|.+|||.|+..++          .-++.+|+..+     +++|.+|.+|+||||+|+.
T Consensus       124 ~~~vv~lLlqhG-Adpt~~D~~G~~~lHla~~~~~----------~~~vayll~~~-----~d~d~~D~~grTpLmwAay  187 (600)
T KOG0509|consen  124 HISVVDLLLQHG-ADPTLKDKQGLTPLHLAAQFGH----------TALVAYLLSKG-----ADIDLRDNNGRTPLMWAAY  187 (600)
T ss_pred             cHHHHHHHHHcC-CCCceecCCCCcHHHHHHHhCc----------hHHHHHHHHhc-----ccCCCcCCCCCCHHHHHHH
Confidence            999999999999 7899999999999999999554          45555665554     6799999999999999999


Q ss_pred             CCCcHHHHHHHhhCCCCCccccC-CCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHH
Q 005790          354 GNVHLELVQLLMSAPSINVNVRD-NDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKM  426 (677)
Q Consensus       354 ~~~~~eiv~lLL~~~Gadin~~d-~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~  426 (677)
                      ++ +...+++||+ .|+.++.+| ..|.||||+|+..|+..+    +.+|++.|++.+.+|.+|.||+..|..+
T Consensus       188 kg-~~~~v~~LL~-f~a~~~~~d~~~g~TpLHwa~~~gN~~~----v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  188 KG-FALFVRRLLK-FGASLLLTDDNHGNTPLHWAVVGGNLTA----VKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             hc-ccHHHHHHHH-hcccccccccccCCchHHHHHhcCCcce----EehhhhcCCcccccccCCCCHHHHHHHh
Confidence            98 6666999999 999999998 899999999999999985    5578889999999999999999988664

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.95  E-value=6.3e-29  Score=273.05  Aligned_cols=321  Identities=19%  Similarity=0.122  Sum_probs=271.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhh-c
Q 005790           27 ASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIR-A  105 (677)
Q Consensus        27 ~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~-d  105 (677)
                      .|+|..||..||.|+|++|+.+|+++..            .+..+.++|..|+..++..+++.|+.    +.+++..+ |
T Consensus       758 ~t~LT~acaggh~e~vellv~rganieh------------rdkkgf~plImaatagh~tvV~~llk----~ha~veaQsd  821 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGANIEH------------RDKKGFVPLIMAATAGHITVVQDLLK----AHADVEAQSD  821 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhcccccc------------cccccchhhhhhcccCchHHHHHHHh----hhhhhhhhcc
Confidence            4999999999999999999999999854            36678899999999999999999998    77777754 5


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      ..+.|+|-+||..|..++|++||..|+.. ..++-..+|||-+|+ ..|..++|.+||.+|+.+|......-        
T Consensus       822 rtkdt~lSlacsggr~~vvelLl~~gank-ehrnvsDytPlsla~-Sggy~~iI~~llS~GseInSrtgSkl--------  891 (2131)
T KOG4369|consen  822 RTKDTMLSLACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLAR-SGGYTKIIHALLSSGSEINSRTGSKL--------  891 (2131)
T ss_pred             cccCceEEEecCCCcchHHHHHHHhhccc-cccchhhcCchhhhc-CcchHHHHHHHhhccccccccccccc--------
Confidence            67889999999999999999999999743 446677889999984 78999999999999998887655432        


Q ss_pred             chhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 005790          186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP  265 (677)
Q Consensus       186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp  265 (677)
                               |-.||++|...||.+.++.|++.|.|++.....+-+|+|-+|+..|..++|.+||.+.+++..+-..|.||
T Consensus       892 ---------gisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltp  962 (2131)
T KOG4369|consen  892 ---------GISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTP  962 (2131)
T ss_pred             ---------CcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcc
Confidence                     35799999999999999999999999977777788899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCcccc--CCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCC
Q 005790          266 LHIAAYRGQPAVVEALILASPSMISVK--NTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNND  343 (677)
Q Consensus       266 L~~A~~~g~~~iv~~LL~~g~~~~~~~--~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~  343 (677)
                      |+-++..|..|+=.+||..| +|++..  .....|+|.+++..          ++...+..|+++.     +-+..+|.+
T Consensus       963 lme~AsgGyvdvg~~li~~g-ad~nasPvp~T~dtalti~a~k----------Gh~kfv~~lln~~-----atv~v~Nkk 1026 (2131)
T KOG4369|consen  963 LMEMASGGYVDVGNLLIAAG-ADTNASPVPNTWDTALTIPANK----------GHTKFVPKLLNGD-----ATVRVPNKK 1026 (2131)
T ss_pred             cchhhcCCccccchhhhhcc-cccccCCCCCcCCccceeecCC----------CchhhhHHhhCCc-----cceecccCC
Confidence            99999999999999999999 555542  33456888888884          4445555555443     447788999


Q ss_pred             CchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHH
Q 005790          344 GRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIR  400 (677)
Q Consensus       344 G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~  400 (677)
                      |+|+|.+|+..+ ++..+.+|++ .++|++..|+...++++.|...|+.+++++++.
T Consensus      1027 G~T~Lwla~~Gg-~lss~~il~~-~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~ 1081 (2131)
T KOG4369|consen 1027 GCTVLWLASAGG-ALSSCPILVS-SVADADQQDNRTNSRTMAAFRKGHFAIVKKMVP 1081 (2131)
T ss_pred             CCcccchhccCC-ccccchHHhh-cccChhhhhcccccccHHHHHhchhheeccccC
Confidence            999999999866 9999999999 899999999999999999999999886655443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.2e-26  Score=247.03  Aligned_cols=237  Identities=14%  Similarity=0.056  Sum_probs=195.2

Q ss_pred             HHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccc------cCCCCCCcH
Q 005790          159 FRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLT------YRDKQGSTI  232 (677)
Q Consensus       159 v~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~------~~d~~g~Tp  232 (677)
                      -++++.+|+++|....                        --+|+..+..|++++|+.+|+++ +      .++..++|+
T Consensus        65 ~~~~~~~~~~i~~~~~------------------------~~~~~~~~~k~~~~~l~s~~~~~-~~~~~~~~~~~~~~~~  119 (437)
T PHA02795         65 YDYFRIHRDNIDQYIV------------------------DRLFAYITYKDIISALVSKNYME-DIFSIIIKNCNSVQDL  119 (437)
T ss_pred             HHHHHHcCcchhhhhh------------------------hhHHhhcchHHHHHHHHhccccc-chhhhhhhccccccHH
Confidence            4788999998774432                        12889999999999999999997 4      578889999


Q ss_pred             HHHHHH--hCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccc-----CCCCCchhhhhhh
Q 005790          233 LHAAAG--RGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVK-----NTSGETFLHSAVS  305 (677)
Q Consensus       233 L~~A~~--~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~-----~~~g~tpLh~A~~  305 (677)
                      ||+++.  .|+.++|++|+++||+++..  .+.||||.|+..++.+++++|+++|+.+.+..     +..+.+++|.|..
T Consensus       120 L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~  197 (437)
T PHA02795        120 LLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDE  197 (437)
T ss_pred             HHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHh
Confidence            999999  89999999999999999985  45899999999999999999999996443333     2346788888887


Q ss_pred             cCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHH
Q 005790          306 GFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL  385 (677)
Q Consensus       306 ~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~  385 (677)
                                .+..+++++|+++|     +++|.+|..|.||||+|+..| +.++|++|++ .|+++|.+|..|+||||+
T Consensus       198 ----------~~~~eIve~LIs~G-----ADIN~kD~~G~TpLh~Aa~~g-~~eiVelLL~-~GAdIN~~d~~G~TpLh~  260 (437)
T PHA02795        198 ----------PTVLEIYKLCIPYI-----EDINQLDAGGRTLLYRAIYAG-YIDLVSWLLE-NGANVNAVMSNGYTCLDV  260 (437)
T ss_pred             ----------cCHHHHHHHHHhCc-----CCcCcCCCCCCCHHHHHHHcC-CHHHHHHHHH-CCCCCCCcCCCCCCHHHH
Confidence                      56788889998776     669999999999999999988 9999999999 999999999999999999


Q ss_pred             HhhCCCC----chHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCC
Q 005790          386 LKQRPQS----ASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSS  454 (677)
Q Consensus       386 A~~~~~~----~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~  454 (677)
                      |+..|+.    ..-..++++|+++|+++++.+..+   +..            .....++++.|+.+++-++.
T Consensus       261 Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~~---~~~------------~~~n~~~ik~lI~y~~~ldy  318 (437)
T PHA02795        261 AVDRGSVIARRETHLKILEILLREPLSIDCIKLAI---LNN------------TIENHDVIKLCIKYFMMVDY  318 (437)
T ss_pred             HHHcCCcccccccHHHHHHHHHhCCCCCCchhHHh---hhc------------ccchHHHHHHHHHHHHhccc
Confidence            9999953    111348999999999998754322   110            11137799999999987753

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.2e-26  Score=227.88  Aligned_cols=177  Identities=18%  Similarity=0.184  Sum_probs=128.7

Q ss_pred             hhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC--CHHHHHHHHhcCCCCCCCC-CCCCcHHHH
Q 005790          192 WEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRG--QVEVVKDLIASFDIINSTD-HQGNTPLHI  268 (677)
Q Consensus       192 ~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g--~~eivk~Ll~~ga~in~~d-~~g~tpL~~  268 (677)
                      ++...+|||+|+..|+.++|+.|++.+    +..+..|.||||+|+..+  +.+++++|+++|++++..+ ..|.||||+
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH   93 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence            334578999999999999999999762    456788999999999854  8999999999999999987 479999999


Q ss_pred             HHHc---CCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCc
Q 005790          269 AAYR---GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGR  345 (677)
Q Consensus       269 A~~~---g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~  345 (677)
                      |+..   ++.+++++|+++| ++++.                                                +|..|.
T Consensus        94 a~~~~~~~~~eiv~~Ll~~g-adin~------------------------------------------------~d~~G~  124 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSG-SSITE------------------------------------------------EDEDGK  124 (209)
T ss_pred             HHHhCccccHHHHHHHHHCC-CCCCC------------------------------------------------cCCCCC
Confidence            8753   4788999998887 44444                                                455555


Q ss_pred             hHHHHHHhC-CCcHHHHHHHhhCCCCCccccCCCCCcHHHH-HhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHH
Q 005790          346 TALHMAITG-NVHLELVQLLMSAPSINVNVRDNDGMTTLDL-LKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASH  423 (677)
Q Consensus       346 TpLh~A~~~-~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~-A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~a  423 (677)
                      ||||+|+.. .++.+++++|++ .|+|++.+|..|.||||. |+..++.+    ++++|+++|++++.+|..|+|||++|
T Consensus       125 TpLh~a~~~~~~~~~iv~~Li~-~gadin~~d~~g~t~Lh~~a~~~~~~~----iv~~Ll~~Gadi~~~d~~g~tpl~la  199 (209)
T PHA02859        125 NLLHMYMCNFNVRINVIKLLID-SGVSFLNKDFDNNNILYSYILFHSDKK----IFDFLTSLGIDINETNKSGYNCYDLI  199 (209)
T ss_pred             CHHHHHHHhccCCHHHHHHHHH-cCCCcccccCCCCcHHHHHHHhcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            555555432 125677777776 677777777777777764 34444443    56666777777777777777777766


Q ss_pred             HHH
Q 005790          424 IKM  426 (677)
Q Consensus       424 l~~  426 (677)
                      ...
T Consensus       200 ~~~  202 (209)
T PHA02859        200 KFR  202 (209)
T ss_pred             hhh
Confidence            654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=4.9e-26  Score=242.46  Aligned_cols=190  Identities=17%  Similarity=0.046  Sum_probs=155.2

Q ss_pred             HHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCcc-----ccCCCCCCCHHHHHHH-hcCCHHH
Q 005790           85 VARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLV-----FGEGEYGVTDIFYAAA-RSKNCDV  158 (677)
Q Consensus        85 ~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~-----~~~~~~g~tpL~~AA~-~~g~~ev  158 (677)
                      ...++|+.    +|++++.+...|     +|+..+..|++++|+.+|+..+     ...+..+.|+||+++. ..|+.++
T Consensus        63 ~~~~~~~~----~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~ei  133 (437)
T PHA02795         63 VLYDYFRI----HRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDI  133 (437)
T ss_pred             HHHHHHHH----cCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHH
Confidence            33455555    999999888777     8999999999999999998633     1467779999999964 1599999


Q ss_pred             HHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccC-----CCCCCcHH
Q 005790          159 FRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYR-----DKQGSTIL  233 (677)
Q Consensus       159 v~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~-----d~~g~TpL  233 (677)
                      |++|+++||+++..+.                     .||||.|+..++.+++++|+++|++..+..     +..+.|++
T Consensus       134 V~~LI~~GADIn~~~~---------------------~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l  192 (437)
T PHA02795        134 VDFMVDHGAVIYKIEC---------------------LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRG  192 (437)
T ss_pred             HHHHHHCCCCCCCCCC---------------------CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchh
Confidence            9999999999986321                     489999999999999999999998553333     23477899


Q ss_pred             HHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790          234 HAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS  305 (677)
Q Consensus       234 ~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~  305 (677)
                      |.|+..++.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+.
T Consensus       193 ~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~G-AdIN~~d~~G~TpLh~Aa~  263 (437)
T PHA02795        193 FLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENG-ANVNAVMSNGYTCLDVAVD  263 (437)
T ss_pred             HHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998 5555555555555555544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.94  E-value=2e-27  Score=261.30  Aligned_cols=317  Identities=21%  Similarity=0.176  Sum_probs=277.1

Q ss_pred             cccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCH
Q 005790           66 ETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTD  145 (677)
Q Consensus        66 ~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tp  145 (677)
                      .+..+-.++|..|+.+++.+++++|+.    +|+++..+|..|.+||..|+..||..+|+.|+.+.+.+....|..+.|+
T Consensus       752 ~Te~n~~t~LT~acaggh~e~vellv~----rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~  827 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGHREEVELLVV----RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTM  827 (2131)
T ss_pred             ccCccccccccccccCccHHHHHHHHH----hcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCce
Confidence            344456789999999999999999998    9999999999999999999999999999999999988888889999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccC
Q 005790          146 IFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYR  225 (677)
Q Consensus       146 L~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~  225 (677)
                      |.+|| ..|+.++|++||.+|++-....-.                   ..|||.+|...|..+||+.|+..|++++...
T Consensus       828 lSlac-sggr~~vvelLl~~gankehrnvs-------------------DytPlsla~Sggy~~iI~~llS~GseInSrt  887 (2131)
T KOG4369|consen  828 LSLAC-SGGRTRVVELLLNAGANKEHRNVS-------------------DYTPLSLARSGGYTKIIHALLSSGSEINSRT  887 (2131)
T ss_pred             EEEec-CCCcchHHHHHHHhhccccccchh-------------------hcCchhhhcCcchHHHHHHHhhccccccccc
Confidence            99985 889999999999999864433222                   1589999999999999999999999984433


Q ss_pred             -CCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhh
Q 005790          226 -DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD-HQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA  303 (677)
Q Consensus       226 -d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d-~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A  303 (677)
                       ..-|..||++|..+||.+.++.|++.|.|+|..- -+.+|+|-+|+..|+.+++.+||... +++..+-..|.|||+-+
T Consensus       888 gSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~-anvehRaktgltplme~  966 (2131)
T KOG4369|consen  888 GSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ-ANVEHRAKTGLTPLMEM  966 (2131)
T ss_pred             ccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHh-hhhhhhcccCCcccchh
Confidence             4678999999999999999999999999999764 34689999999999999999999988 77888999999999999


Q ss_pred             hhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccC--CCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCc
Q 005790          304 VSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKN--NDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMT  381 (677)
Q Consensus       304 ~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d--~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~T  381 (677)
                      +.+|..++-+          +|     ++.|+|+|..-  ....|+|-+++..| |...|++|+. ..|-+..+|.+|.|
T Consensus       967 AsgGyvdvg~----------~l-----i~~gad~nasPvp~T~dtalti~a~kG-h~kfv~~lln-~~atv~v~NkkG~T 1029 (2131)
T KOG4369|consen  967 ASGGYVDVGN----------LL-----IAAGADTNASPVPNTWDTALTIPANKG-HTKFVPKLLN-GDATVRVPNKKGCT 1029 (2131)
T ss_pred             hcCCccccch----------hh-----hhcccccccCCCCCcCCccceeecCCC-chhhhHHhhC-CccceecccCCCCc
Confidence            9976555444          44     45556666532  24569999999988 9999999999 89999999999999


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhC
Q 005790          382 TLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLG  428 (677)
Q Consensus       382 pL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~  428 (677)
                      +|.+|+.-|+..    .+.+|+++++|++.+|+.-.++++.|++...
T Consensus      1030 ~Lwla~~Gg~ls----s~~il~~~~ad~d~qdnr~~S~~maafRKgh 1072 (2131)
T KOG4369|consen 1030 VLWLASAGGALS----SCPILVSSVADADQQDNRTNSRTMAAFRKGH 1072 (2131)
T ss_pred             ccchhccCCccc----cchHHhhcccChhhhhcccccccHHHHHhch
Confidence            999999999988    4888999999999999999999999887644

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=7.1e-26  Score=224.23  Aligned_cols=178  Identities=20%  Similarity=0.153  Sum_probs=155.3

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHh-cCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790          105 AGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAAR-SKNCDVFRLIYDFAVSPRFLTAKGGELEEHI  183 (677)
Q Consensus       105 d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~-~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~  183 (677)
                      ...+.||||+|+..|+.++|+.|++.    ++..+..|.||||+|+.. .++.+++++|+++|++++..+..        
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~--------   85 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRD--------   85 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCC--------
Confidence            45678999999999999999999975    345688899999998643 35899999999999999876532        


Q ss_pred             hcchhhhhhhccchHHHHHHhc---CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH--hCCHHHHHHHHhcCCCCCCC
Q 005790          184 EEIPSVYKWEMMNRAVHAAARG---GNLKILKELLENCTDVLTYRDKQGSTILHAAAG--RGQVEVVKDLIASFDIINST  258 (677)
Q Consensus       184 ~~~~~~~~~~~~~t~Lh~A~~~---g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~--~g~~eivk~Ll~~ga~in~~  258 (677)
                                .|.||||+|+..   ++.+++++|+++|+++ +.+|..|.||||+|+.  .++.+++++|+++|++++.+
T Consensus        86 ----------~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~  154 (209)
T PHA02859         86 ----------NNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNK  154 (209)
T ss_pred             ----------CCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc
Confidence                      136999998764   4799999999999999 7899999999999886  46899999999999999999


Q ss_pred             CCCCCcHHHH-HHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhc
Q 005790          259 DHQGNTPLHI-AAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSG  306 (677)
Q Consensus       259 d~~g~tpL~~-A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~  306 (677)
                      |..|.||||. |+..++.+++++|++.| ++++.++..|.|||++|...
T Consensus       155 d~~g~t~Lh~~a~~~~~~~iv~~Ll~~G-adi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        155 DFDNNNILYSYILFHSDKKIFDFLTSLG-IDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             cCCCCcHHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhh
Confidence            9999999995 56788999999999999 68999999999999999863

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=2.8e-26  Score=213.62  Aligned_cols=238  Identities=21%  Similarity=0.249  Sum_probs=204.9

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhh
Q 005790          105 AGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIE  184 (677)
Q Consensus       105 d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~  184 (677)
                      +..|...+-.|...|+.+++..++.-.+..+...+.+|+..++.++ -+++.+.+..+|.+|+..|..+..         
T Consensus        59 ~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~a-p~~s~~k~sttltN~~rgnevs~~---------  128 (296)
T KOG0502|consen   59 NALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAA-PCGSVDKVSTTLTNGARGNEVSLM---------  128 (296)
T ss_pred             HhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcC-CCCCcceeeeeecccccCCccccc---------
Confidence            3456667788899999999999988888777788888999999885 778999999999999877755443         


Q ss_pred             cchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCc
Q 005790          185 EIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNT  264 (677)
Q Consensus       185 ~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~t  264 (677)
                                +.+|+.+++...+++.+..+.++.   .|..|+.|.|||+||+..|++++|++||+.|++++...+...+
T Consensus       129 ----------p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~res  195 (296)
T KOG0502|consen  129 ----------PWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRES  195 (296)
T ss_pred             ----------cCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhh
Confidence                      367999999988888877776643   3678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCC
Q 005790          265 PLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDG  344 (677)
Q Consensus       265 pL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G  344 (677)
                      +|++|++.|..++|++||..+.+                                                 +|.-|.+|
T Consensus       196 ALsLAt~ggytdiV~lLL~r~vd-------------------------------------------------VNvyDwNG  226 (296)
T KOG0502|consen  196 ALSLATRGGYTDIVELLLTREVD-------------------------------------------------VNVYDWNG  226 (296)
T ss_pred             hHhHHhcCChHHHHHHHHhcCCC-------------------------------------------------cceeccCC
Confidence            99999999999999999988832                                                 66778889


Q ss_pred             chHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHH
Q 005790          345 RTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIA  421 (677)
Q Consensus       345 ~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~  421 (677)
                      .|||.||++.| |.++|+.||. .|||++..+..|.+++.+|+..|+.     +++..|++-++.+++|..-+||+|
T Consensus       227 gTpLlyAvrgn-hvkcve~Ll~-sGAd~t~e~dsGy~~mdlAValGyr-----~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  227 GTPLLYAVRGN-HVKCVESLLN-SGADVTQEDDSGYWIMDLAVALGYR-----IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             CceeeeeecCC-hHHHHHHHHh-cCCCcccccccCCcHHHHHHHhhhH-----HHHHHHHHHHHHHhhcccCCCCCC
Confidence            99999999977 9999999999 9999999999999999999999985     477777888888888888888864

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=1.3e-25  Score=209.15  Aligned_cols=235  Identities=23%  Similarity=0.214  Sum_probs=201.1

Q ss_pred             cCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhc
Q 005790           26 YASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRA  105 (677)
Q Consensus        26 g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d  105 (677)
                      |.+-+-.|...|+.+++..++...++.++.           ....+...++.++-+++...+..++.    +|+..|..+
T Consensus        62 ge~~~~~~~~s~nsd~~v~s~~~~~~~~~~-----------t~p~g~~~~~v~ap~~s~~k~sttlt----N~~rgnevs  126 (296)
T KOG0502|consen   62 GESLLTVAVRSGNSDVAVQSAQLDPDAIDE-----------TDPEGWSALLVAAPCGSVDKVSTTLT----NGARGNEVS  126 (296)
T ss_pred             CCcccchhhhcCCcHHHHHhhccCCCCCCC-----------CCchhhhhhhhcCCCCCcceeeeeec----ccccCCccc
Confidence            445566777788888888887776665443           45557788888998998888888888    889899999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      -.+.+|+.+++...+++++..+.+.   .++..|+.|.|||+||| ..|+.++|++||+.|++|+......         
T Consensus       127 ~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAa-a~G~i~vV~fLL~~GAdp~~lgk~r---------  193 (296)
T KOG0502|consen  127 LMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAA-AKGHIPVVQFLLNSGADPDALGKYR---------  193 (296)
T ss_pred             cccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHH-hcCchHHHHHHHHcCCChhhhhhhh---------
Confidence            9999999999999999988877764   67889999999999997 5599999999999999998764332         


Q ss_pred             chhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 005790          186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP  265 (677)
Q Consensus       186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp  265 (677)
                                .++|.+|++.|..+||++||+++.|+ |..|-+|-|||.+|+..|+.+||+.||+.|++++..+..|+++
T Consensus       194 ----------esALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~  262 (296)
T KOG0502|consen  194 ----------ESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWI  262 (296)
T ss_pred             ----------hhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcH
Confidence                      48999999999999999999999999 8899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhh
Q 005790          266 LHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH  301 (677)
Q Consensus       266 L~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh  301 (677)
                      +..|+..|+. +|+..|+.. .+....+..-.+|+|
T Consensus       263 mdlAValGyr-~Vqqvie~h-~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  263 MDLAVALGYR-IVQQVIEKH-ALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHHhhhH-HHHHHHHHH-HHHHhhcccCCCCCC
Confidence            9999999988 888888876 566677777777775

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=1.9e-24  Score=233.21  Aligned_cols=247  Identities=23%  Similarity=0.225  Sum_probs=197.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcC------------CCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCc
Q 005790          111 LLYTAASAGDLGFVKQLLDKN------------PLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGE  178 (677)
Q Consensus       111 ~L~~Aa~~g~~eivk~LL~~g------------~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~  178 (677)
                      =|--|+..|+++.|..||+..            .+.++..|.+|.|.||+|| .+|+.+++++|+++.+-.+..+..   
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~-Lng~~~is~llle~ea~ldl~d~k---   81 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAV-LNGQNQISKLLLDYEALLDLCDTK---   81 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHH-hcCchHHHHHHhcchhhhhhhhcc---
Confidence            367789999999999999862            2445667888999999985 679999999999987755555433   


Q ss_pred             chhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCC
Q 005790          179 LEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST  258 (677)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~  258 (677)
                                      |.+|||+|+..|+.|+++.|+..+..+ +.....|.||||.|++.|+.+++.+|+.+|+++-.+
T Consensus        82 ----------------g~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~  144 (854)
T KOG0507|consen   82 ----------------GILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIR  144 (854)
T ss_pred             ----------------CcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHhcCCCcccc
Confidence                            468999999999999999999999555 888999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhh
Q 005790          259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIIN  338 (677)
Q Consensus       259 d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in  338 (677)
                      +..+.|+|.+|++.|..++|+.|++.. .+...                                 +...     +  -.
T Consensus       145 nns~~t~ldlA~qfgr~~Vvq~ll~~~-~~~~~---------------------------------~~~~-----~--~~  183 (854)
T KOG0507|consen  145 NNSKETVLDLASRFGRAEVVQMLLQKK-FPVQS---------------------------------SLRV-----G--DI  183 (854)
T ss_pred             CcccccHHHHHHHhhhhHHHHHHhhhc-cchhh---------------------------------cccC-----C--CC
Confidence            999999999999999999999999762 11110                                 0000     0  12


Q ss_pred             ccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCc
Q 005790          339 AKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARR  418 (677)
Q Consensus       339 ~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T  418 (677)
                      .++..+-+|||.|+.+| |.++++.|++ .|.|+|.....| |+||.|+.+|..+    ++.+|++.|+....++.+|+|
T Consensus       184 ~~~~~~~~plHlaakng-h~~~~~~ll~-ag~din~~t~~g-talheaalcgk~e----vvr~ll~~gin~h~~n~~~qt  256 (854)
T KOG0507|consen  184 KRPFPAIYPLHLAAKNG-HVECMQALLE-AGFDINYTTEDG-TALHEAALCGKAE----VVRFLLEIGINTHIKNQHGQT  256 (854)
T ss_pred             CCCCCCcCCcchhhhcc-hHHHHHHHHh-cCCCcccccccc-hhhhhHhhcCcch----hhhHHHhhccccccccccchH
Confidence            34566778888888877 8888888888 888888776665 8888888888877    577888888888888888888


Q ss_pred             hHHHHHHH
Q 005790          419 AIASHIKM  426 (677)
Q Consensus       419 ~L~~al~~  426 (677)
                      +|-...+.
T Consensus       257 aldil~d~  264 (854)
T KOG0507|consen  257 ALDIIIDL  264 (854)
T ss_pred             HHHHHHhc
Confidence            87665554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=9.2e-24  Score=248.23  Aligned_cols=255  Identities=22%  Similarity=0.185  Sum_probs=176.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKN-PLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI  186 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g-~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~  186 (677)
                      +...|+.||..|+.+.|+.+++.+ ..+++..|..|.||||++|+.+++.+++++|+++|+    .              
T Consensus        17 ~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~--------------   78 (743)
T TIGR00870        17 EEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----R--------------   78 (743)
T ss_pred             HHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----C--------------
Confidence            456788888888888888888762 235566777788888866677788888888888775    1              


Q ss_pred             hhhhhhhccchHHHHHHhcC---CHHHHHHHHhcCCC------c---cccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 005790          187 PSVYKWEMMNRAVHAAARGG---NLKILKELLENCTD------V---LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI  254 (677)
Q Consensus       187 ~~~~~~~~~~t~Lh~A~~~g---~~eivk~LL~~ga~------~---~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~  254 (677)
                           +..|.||||.|+..+   ...+++.+...+.+      +   .......|.||||+|+.+|+.++|++|+++|++
T Consensus        79 -----~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAd  153 (743)
T TIGR00870        79 -----GAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS  153 (743)
T ss_pred             -----CCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Confidence                 112467888877622   22344444444322      1   011234688999999999999999999999998


Q ss_pred             CCCCC--------------CCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHH--HHHhhHH
Q 005790          255 INSTD--------------HQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYA--FRRLDRQ  318 (677)
Q Consensus       255 in~~d--------------~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~--~~~L~~~  318 (677)
                      ++..+              ..|.||||+|+..|+.+++++|+++| ++++..|..|+||||+|+..+....  .+.....
T Consensus       154 v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g-adin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~  232 (743)
T TIGR00870       154 VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP-ADILTADSLGNTLLHLLVMENEFKAEYEELSCQM  232 (743)
T ss_pred             CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC-cchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHH
Confidence            88653              25889999999999999999999988 6789999999999999998652211  1111122


Q ss_pred             HHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhC
Q 005790          319 VKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQR  389 (677)
Q Consensus       319 ~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~  389 (677)
                      .+.+..++... .+.....+..|.+|.||||+|+..+ +.+++++|++ .+++..........|.+.+...
T Consensus       233 ~~~l~~ll~~~-~~~~el~~i~N~~g~TPL~~A~~~g-~~~l~~lLL~-~~~~~kk~~a~~~~~~~~~~~~  300 (743)
T TIGR00870       233 YNFALSLLDKL-RDSKELEVILNHQGLTPLKLAAKEG-RIVLFRLKLA-IKYKQKKFVAWPNGQQLLSLYW  300 (743)
T ss_pred             HHHHHHHHhcc-CChHhhhhhcCCCCCCchhhhhhcC-CccHHHHHHH-HHHhcceeeccCcchHhHhhhc
Confidence            22232222222 1112223677999999999999988 9999999999 6666555556667777766543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=1.4e-22  Score=239.65  Aligned_cols=191  Identities=23%  Similarity=0.283  Sum_probs=161.9

Q ss_pred             CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 005790          206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS  285 (677)
Q Consensus       206 g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g  285 (677)
                      ...++-.++.+.+...   .+..+.++|+.||..|+.++++.|++.|+++|..|..|.||||+|+..|+.+++++|+++|
T Consensus       505 ~~l~v~~ll~~~~~~~---~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g  581 (823)
T PLN03192        505 HDLNVGDLLGDNGGEH---DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHA  581 (823)
T ss_pred             ccccHHHHHhhccccc---CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcC
Confidence            3344555555554432   4456779999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHh
Q 005790          286 PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLM  365 (677)
Q Consensus       286 ~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL  365 (677)
                       ++++.+|.+|.||||+|+..+          +.+++++|++.+.     ..  ....|.++||.|+..| +.+++++|+
T Consensus       582 -adin~~d~~G~TpL~~A~~~g----------~~~iv~~L~~~~~-----~~--~~~~~~~~L~~Aa~~g-~~~~v~~Ll  642 (823)
T PLN03192        582 -CNVHIRDANGNTALWNAISAK----------HHKIFRILYHFAS-----IS--DPHAAGDLLCTAAKRN-DLTAMKELL  642 (823)
T ss_pred             -CCCCCcCCCCCCHHHHHHHhC----------CHHHHHHHHhcCc-----cc--CcccCchHHHHHHHhC-CHHHHHHHH
Confidence             789999999999999999954          4556666665442     11  2346789999999988 999999999


Q ss_pred             hCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccC-CchHHHH
Q 005790          366 SAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSA-RRAIASH  423 (677)
Q Consensus       366 ~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G-~T~L~~a  423 (677)
                      + +|+|+|.+|.+|.||||+|+..|+.+    ++++|+++|||++..|..| .||+..+
T Consensus       643 ~-~Gadin~~d~~G~TpLh~A~~~g~~~----iv~~Ll~~GAdv~~~~~~g~~t~~~l~  696 (823)
T PLN03192        643 K-QGLNVDSEDHQGATALQVAMAEDHVD----MVRLLIMNGADVDKANTDDDFSPTELR  696 (823)
T ss_pred             H-CCCCCCCCCCCCCCHHHHHHHCCcHH----HHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence            9 99999999999999999999999987    7999999999999999988 8886544

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=4.3e-23  Score=222.79  Aligned_cols=252  Identities=23%  Similarity=0.182  Sum_probs=211.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCch-hhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcC
Q 005790           28 SPIDWAAANGHYDLVRELLRIDGNHL-IKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAG  106 (677)
Q Consensus        28 TpL~~Aa~~G~~diV~~LL~~ga~~n-~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~  106 (677)
                      +=|.-|+..|+++.|..||+.----- ..+...+....-..+.++.|.||+|+.+++..+.++|++    +.+-+++.|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle----~ea~ldl~d~   80 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLD----YEALLDLCDT   80 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhc----chhhhhhhhc
Confidence            34778999999999999998521100 000111111122345589999999999999999999999    7888888999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790          107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI  186 (677)
Q Consensus       107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~  186 (677)
                      .|.+|||+|+..|+.++|++||..+ +..+.....|.||||.|| ..|+.+++.+|+.+|+||-..+..+          
T Consensus        81 kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaa-qhgh~dvv~~Ll~~~adp~i~nns~----------  148 (854)
T KOG0507|consen   81 KGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAA-QHGHLEVVFYLLKKNADPFIRNNSK----------  148 (854)
T ss_pred             cCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhh-hhcchHHHHHHHhcCCCccccCccc----------
Confidence            9999999999999999999999998 567778889999999996 6699999999999999998777664          


Q ss_pred             hhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCc-------cccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCC
Q 005790          187 PSVYKWEMMNRAVHAAARGGNLKILKELLENCTDV-------LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD  259 (677)
Q Consensus       187 ~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~-------~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d  259 (677)
                               .|+|..|++.|..++|+.|+...-++       ...++..+.+|||.|+++|+.++++.|+++|.++|...
T Consensus       149 ---------~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t  219 (854)
T KOG0507|consen  149 ---------ETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTT  219 (854)
T ss_pred             ---------ccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccccc
Confidence                     68999999999999999999873222       13456678899999999999999999999999999988


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhc
Q 005790          260 HQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSG  306 (677)
Q Consensus       260 ~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~  306 (677)
                      ..| |+||.|+..|..++|.+|++.| .....++.+|+|+|.+....
T Consensus       220 ~~g-talheaalcgk~evvr~ll~~g-in~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  220 EDG-TALHEAALCGKAEVVRFLLEIG-INTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             ccc-hhhhhHhhcCcchhhhHHHhhc-cccccccccchHHHHHHHhc
Confidence            776 9999999999999999999999 67899999999999887653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.89  E-value=1e-22  Score=239.42  Aligned_cols=231  Identities=20%  Similarity=0.142  Sum_probs=179.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHh--cCCchhhhhhHHhhhhccccccccccHH-HHHhhchHHHHHHHHhhhhcCCCCchhh
Q 005790           28 SPIDWAAANGHYDLVRELLRI--DGNHLIKLTSLRRIRRLETVWDDEEQFD-DVAKCRSKVARKLFLECKSKNGKNSLIR  104 (677)
Q Consensus        28 TpL~~Aa~~G~~diV~~LL~~--ga~~n~~~~~~~~~~~l~~~~~~~~~l~-~A~~~~~~~v~~lLl~~~~~~g~~~~~~  104 (677)
                      .+|+.||+.|+.+.|+.+++.  +.++|.            .+..+.+||| .|+.+++.+++++|++    .|.    .
T Consensus        19 ~~~l~A~~~g~~~~v~~lL~~~~~~~in~------------~d~~G~t~Lh~~A~~~~~~eiv~lLl~----~g~----~   78 (743)
T TIGR00870        19 KAFLPAAERGDLASVYRDLEEPKKLNINC------------PDRLGRSALFVAAIENENLELTELLLN----LSC----R   78 (743)
T ss_pred             HHHHHHHHcCCHHHHHHHhccccccCCCC------------cCccchhHHHHHHHhcChHHHHHHHHh----CCC----C
Confidence            899999999999999999999  777653            3557899999 9999999999999998    555    5


Q ss_pred             cCCCChHHHHHHHc---CCHHHHHHHHHcCCCc-----c----ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccc
Q 005790          105 AGYGGWLLYTAASA---GDLGFVKQLLDKNPLL-----V----FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFL  172 (677)
Q Consensus       105 d~~G~t~L~~Aa~~---g~~eivk~LL~~g~~~-----~----~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~  172 (677)
                      +..|.||||.|+..   +..++++.++..++..     +    ......|.||||+|| ..|+.++|++|+++|++++..
T Consensus        79 ~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa-~~~~~eiVklLL~~GAdv~~~  157 (743)
T TIGR00870        79 GAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAA-HRQNYEIVKLLLERGASVPAR  157 (743)
T ss_pred             CCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHH-HhCCHHHHHHHHhCCCCCCcC
Confidence            77899999999972   2233444444444221     1    112356999999996 669999999999999999955


Q ss_pred             cccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhC---------CHH
Q 005790          173 TAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRG---------QVE  243 (677)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g---------~~e  243 (677)
                      .......     ..........|.+|||.|+..|+.+++++|+++|+++ +..|..|+||||+|+..+         ...
T Consensus       158 ~~~~~~~-----~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~  231 (743)
T TIGR00870       158 ACGDFFV-----KSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTADSLGNTLLHLLVMENEFKAEYEELSCQ  231 (743)
T ss_pred             cCCchhh-----cCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhhhhHHHHHHHhhhhhhHHHHHHHHH
Confidence            4322110     0000111235789999999999999999999999998 789999999999999987         234


Q ss_pred             HHHHHHhcCCCC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 005790          244 VVKDLIASFDII-------NSTDHQGNTPLHIAAYRGQPAVVEALILAS  285 (677)
Q Consensus       244 ivk~Ll~~ga~i-------n~~d~~g~tpL~~A~~~g~~~iv~~LL~~g  285 (677)
                      +.+++++.++..       +..|.+|.||||+|+..|+.+++++|++.+
T Consensus       232 ~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       232 MYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             HHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            666777666654       567899999999999999999999999853

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-22  Score=213.13  Aligned_cols=215  Identities=24%  Similarity=0.287  Sum_probs=182.9

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 005790          198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAV  277 (677)
Q Consensus       198 ~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~i  277 (677)
                      .+..|+..|..+-|+.|+..|+.+ +..+.+|.|+||.+|...+.+||++|+++|++||..|..|+||||.|+..|+..+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            566788999999999999999998 8899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHh----------------hHHHHHHHHHHcccccchhhhhhccC
Q 005790          278 VEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRL----------------DRQVKLMKQLASGQIFNMEDIINAKN  341 (677)
Q Consensus       278 v~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L----------------~~~~eiv~~Ll~~~~~~~~~~in~~d  341 (677)
                      +++|+.+| +++...+.+|..|+..+..-....+....                ...+.-+...+.     .|.+.++++
T Consensus       122 ~~~li~~g-A~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~-----~G~~~d~~~  195 (527)
T KOG0505|consen  122 VEYLIQHG-ANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN-----AGAELDARH  195 (527)
T ss_pred             HHHHHHhh-hhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh-----ccccccccc
Confidence            99999999 67888899999998877653322222111                001111222222     234467777


Q ss_pred             CCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHH
Q 005790          342 NDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIA  421 (677)
Q Consensus       342 ~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~  421 (677)
                      ..|.|+||.|+..| ..++.++||+ .|.+++++|.+|+||||.|+.++..+    ++++|+++|++++.....|.||+.
T Consensus       196 ~rG~T~lHvAaa~G-y~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~~~----~~elL~~~ga~~d~~t~~g~~p~d  269 (527)
T KOG0505|consen  196 ARGATALHVAAANG-YTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQED----ACELLVEHGADMDAKTKMGETPLD  269 (527)
T ss_pred             cccchHHHHHHhhh-HHHHHHHHHH-hccCcccccccCCCcccHHHHhhhHh----HHHHHHHhhcccchhhhcCCCCcc
Confidence            78999999999988 9999999999 99999999999999999999999988    688999999999999999999987


Q ss_pred             HHHH
Q 005790          422 SHIK  425 (677)
Q Consensus       422 ~al~  425 (677)
                      .+-.
T Consensus       270 v~de  273 (527)
T KOG0505|consen  270 VADE  273 (527)
T ss_pred             chhh
Confidence            6654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.88  E-value=6.4e-22  Score=234.09  Aligned_cols=174  Identities=25%  Similarity=0.344  Sum_probs=156.6

Q ss_pred             ccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 005790          194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG  273 (677)
Q Consensus       194 ~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g  273 (677)
                      .+.++||.|+..|+.++++.|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAK  602 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhC
Confidence            3568999999999999999999999998 889999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790          274 QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT  353 (677)
Q Consensus       274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~  353 (677)
                      +.+++++|++.+. ..  ....+.++||.|+.          .++.+++++|++.+     +++|.+|.+|.||||+|+.
T Consensus       603 ~~~iv~~L~~~~~-~~--~~~~~~~~L~~Aa~----------~g~~~~v~~Ll~~G-----adin~~d~~G~TpLh~A~~  664 (823)
T PLN03192        603 HHKIFRILYHFAS-IS--DPHAAGDLLCTAAK----------RNDLTAMKELLKQG-----LNVDSEDHQGATALQVAMA  664 (823)
T ss_pred             CHHHHHHHHhcCc-cc--CcccCchHHHHHHH----------hCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHH
Confidence            9999999998763 22  23567899999999          45667777777665     5699999999999999999


Q ss_pred             CCCcHHHHHHHhhCCCCCccccCCCC-CcHHHHHhh
Q 005790          354 GNVHLELVQLLMSAPSINVNVRDNDG-MTTLDLLKQ  388 (677)
Q Consensus       354 ~~~~~eiv~lLL~~~Gadin~~d~~G-~TpL~~A~~  388 (677)
                      .| +.+++++|++ +|+|++..|..| .||++++..
T Consensus       665 ~g-~~~iv~~Ll~-~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        665 ED-HVDMVRLLIM-NGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             CC-cHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHH
Confidence            88 9999999999 999999999988 899987643

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=5.5e-22  Score=197.85  Aligned_cols=165  Identities=27%  Similarity=0.282  Sum_probs=128.5

Q ss_pred             CchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHh----cCCHHHHHHHHhcCCCccccccc
Q 005790          100 NSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAAR----SKNCDVFRLIYDFAVSPRFLTAK  175 (677)
Q Consensus       100 ~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~----~g~~evv~lLl~~Gad~~~~~~~  175 (677)
                      -+|+.|.+|+|+||||+..++.++|+.||+.|-.+++..+.-|+||++.+|.-    ..+.++|.-|+.-| |+|.....
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ  338 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ  338 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh
Confidence            46788999999999999999999999999999999999999999999998743    24566777777765 45544333


Q ss_pred             CCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHh-cCCC
Q 005790          176 GGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA-SFDI  254 (677)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~-~ga~  254 (677)
                      .                  |+|+|++|+.+|..++|+.||..|+|+ |.+|.+|.|+|++||.+||.|+|++||. .++|
T Consensus       339 ~------------------gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd  399 (452)
T KOG0514|consen  339 H------------------GQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD  399 (452)
T ss_pred             h------------------cchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCccc
Confidence            2                  467777777777777777777777777 6777777777777777777777777776 4567


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005790          255 INSTDHQGNTPLHIAAYRGQPAVVEALILA  284 (677)
Q Consensus       255 in~~d~~g~tpL~~A~~~g~~~iv~~LL~~  284 (677)
                      +...|.+|.|+|++|...|+.+|.-+|..+
T Consensus       400 ~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  400 ISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             ceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            777777777777777777777777666543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=7.1e-21  Score=189.94  Aligned_cols=160  Identities=30%  Similarity=0.397  Sum_probs=138.3

Q ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHc-----CCHHHHHHHHHhCCCCcccc-CC
Q 005790          222 LTYRDKQGSTILHAAAGRGQVEVVKDLIASF-DIINSTDHQGNTPLHIAAYR-----GQPAVVEALILASPSMISVK-NT  294 (677)
Q Consensus       222 ~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~g-a~in~~d~~g~tpL~~A~~~-----g~~~iv~~LL~~g~~~~~~~-~~  294 (677)
                      .|..|.+|+|+||||+.++|+++|+.||+.| +++|..+.-|+||+|+|+..     .+.++|..|...|  ++|.+ ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg--nVNaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG--DVNAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc--Ccchhhhh
Confidence            3778999999999999999999999999988 58999999999999999853     4678899999888  34544 45


Q ss_pred             CCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccc
Q 005790          295 SGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV  374 (677)
Q Consensus       295 ~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~  374 (677)
                      .|+|+|++|+..|+.+.          ++.|     +..++|+|.+|.+|.|+|++||++| |.|||++||...++|+..
T Consensus       339 ~gQTALMLAVSHGr~d~----------vk~L-----LacgAdVNiQDdDGSTALMCA~EHG-hkEivklLLA~p~cd~sL  402 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDM----------VKAL-----LACGADVNIQDDDGSTALMCAAEHG-HKEIVKLLLAVPSCDISL  402 (452)
T ss_pred             hcchhhhhhhhcCcHHH----------HHHH-----HHccCCCccccCCccHHHhhhhhhC-hHHHHHHHhccCccccee
Confidence            69999999999655554          4444     5566889999999999999999999 999999999999999999


Q ss_pred             cCCCCCcHHHHHhhCCCCchHHHHH
Q 005790          375 RDNDGMTTLDLLKQRPQSASSDILI  399 (677)
Q Consensus       375 ~d~~G~TpL~~A~~~~~~~~~~~lv  399 (677)
                      .|.+|-|+|.+|...|+.++.-.|.
T Consensus       403 tD~DgSTAl~IAleagh~eIa~mlY  427 (452)
T KOG0514|consen  403 TDVDGSTALSIALEAGHREIAVMLY  427 (452)
T ss_pred             ecCCCchhhhhHHhcCchHHHHHHH
Confidence            9999999999999999998654443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=2.3e-20  Score=195.96  Aligned_cols=230  Identities=25%  Similarity=0.227  Sum_probs=157.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCC
Q 005790           29 PIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYG  108 (677)
Q Consensus        29 pL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G  108 (677)
                      -+.-|+..|.++-|+.||..|+++|.            ...++.|++|.++...+.+++++|++    +|++||..|..|
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~------------~n~DglTalhq~~id~~~e~v~~l~e----~ga~Vn~~d~e~  106 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNL------------CNVDGLTALHQACIDDNLEMVKFLVE----NGANVNAQDNEG  106 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccc------------cCCccchhHHHHHhcccHHHHHHHHH----hcCCcccccccc
Confidence            35677888899999999988877643            34556666666666666666666666    666666666666


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHh-cCCCcccccccCCcchhhhhcch
Q 005790          109 GWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYD-FAVSPRFLTAKGGELEEHIEEIP  187 (677)
Q Consensus       109 ~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~-~Gad~~~~~~~~~~~~~~~~~~~  187 (677)
                      +||||.|+.+|++.+|++|+..|+.. ...+..|..|+..+- ..-..+++..-.. .|++++..-.             
T Consensus       107 wtPlhaaascg~~~i~~~li~~gA~~-~avNsdg~~P~dl~e-~ea~~~~l~~~~~r~gi~iea~R~-------------  171 (527)
T KOG0505|consen  107 WTPLHAAASCGYLNIVEYLIQHGANL-LAVNSDGNMPYDLAE-DEATLDVLETEMARQGIDIEAARK-------------  171 (527)
T ss_pred             CCcchhhcccccHHHHHHHHHhhhhh-hhccCCCCCcccccc-CcchhHHHHHHHHHhcccHHHHhh-------------
Confidence            66666666666666666666666532 233444545544431 1112222221111 1111100000             


Q ss_pred             hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790          188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH  267 (677)
Q Consensus       188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~  267 (677)
                           ...++-|         .-++..+..|... +.++..|.|.||.|+.+|..++.++|+++|.+++..|.+|+||||
T Consensus       172 -----~~e~~ml---------~D~~q~l~~G~~~-d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlH  236 (527)
T KOG0505|consen  172 -----AEEQTML---------DDARQWLNAGAEL-DARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLH  236 (527)
T ss_pred             -----hhHHHHH---------HHHHHHHhccccc-cccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCccc
Confidence                 0001111         2233344477776 777777999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790          268 IAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS  305 (677)
Q Consensus       268 ~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~  305 (677)
                      .|+.-|+.+++++|+++| ++.+..+..|.||+.+|..
T Consensus       237 AAA~Wg~~~~~elL~~~g-a~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  237 AAAHWGQEDACELLVEHG-ADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHhhhHhHHHHHHHhh-cccchhhhcCCCCccchhh
Confidence            999999999999999999 7899999999999999985

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.83  E-value=6.2e-20  Score=175.00  Aligned_cols=140  Identities=19%  Similarity=0.259  Sum_probs=88.7

Q ss_pred             cCCCCCCcHHHHHHHhCCH----HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH---HHHHHHhCCCCccccCCCC
Q 005790          224 YRDKQGSTILHAAAGRGQV----EVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAV---VEALILASPSMISVKNTSG  296 (677)
Q Consensus       224 ~~d~~g~TpL~~A~~~g~~----eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~i---v~~LL~~g~~~~~~~~~~g  296 (677)
                      ..+..+.++||.||+.|+.    +++++|++.|++++..|..|+||||+|+..|+.++   +++|++.| ++        
T Consensus        15 ~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-ad--------   85 (166)
T PHA02743         15 EIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG-AD--------   85 (166)
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC-CC--------
Confidence            3445555666666666665    44455566666666666666666666666665443   55555555 22        


Q ss_pred             CchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccC-CCCchHHHHHHhCCCcHHHHHHHhhCCCCCcccc
Q 005790          297 ETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKN-NDGRTALHMAITGNVHLELVQLLMSAPSINVNVR  375 (677)
Q Consensus       297 ~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d-~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~  375 (677)
                                                              +|.++ ..|.||||+|+..+ +.+++++|+...|++++.+
T Consensus        86 ----------------------------------------in~~d~~~g~TpLh~A~~~g-~~~iv~~Ll~~~gad~~~~  124 (166)
T PHA02743         86 ----------------------------------------INARELGTGNTLLHIAASTK-NYELAEWLCRQLGVNLGAI  124 (166)
T ss_pred             ----------------------------------------CCCCCCCCCCcHHHHHHHhC-CHHHHHHHHhccCCCccCc
Confidence                                                    44445 35677777777766 7777777773257777777


Q ss_pred             CCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCC
Q 005790          376 DNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSAR  417 (677)
Q Consensus       376 d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~  417 (677)
                      |..|.||||+|+..++.+    ++++|+++|++++.++..|.
T Consensus       125 d~~g~tpL~~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        125 NYQHETAYHIAYKMRDRR----MMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcccCCc
Confidence            777777777777777655    56777777777776665553

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=2.5e-19  Score=170.83  Aligned_cols=148  Identities=13%  Similarity=0.044  Sum_probs=118.4

Q ss_pred             hcCCCCchhhcCCCChHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHH---HHHHHHhcCC
Q 005790           95 SKNGKNSLIRAGYGGWLLYTAASAGDL----GFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCD---VFRLIYDFAV  167 (677)
Q Consensus        95 ~~~g~~~~~~d~~G~t~L~~Aa~~g~~----eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~e---vv~lLl~~Ga  167 (677)
                      -.++++++..+..+.++||+||+.|++    +++++|++.++ .++..|..|+||||+|| ..|+.+   ++++|+++|+
T Consensus         7 ~~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~-~~~~~d~~g~t~Lh~Aa-~~g~~~~~~~i~~Ll~~Ga   84 (166)
T PHA02743          7 AGNNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGH-LLHRYDHHGRQCTHMVA-WYDRANAVMKIELLVNMGA   84 (166)
T ss_pred             cccchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcch-hhhccCCCCCcHHHHHH-HhCccCHHHHHHHHHHcCC
Confidence            346788888899999999999999998    56667777775 56677889999999986 546544   4788999998


Q ss_pred             CcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHh-cCCCccccCCCCCCcHHHHHHHhCCHHHHH
Q 005790          168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLE-NCTDVLTYRDKQGSTILHAAAGRGQVEVVK  246 (677)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~-~ga~~~~~~d~~g~TpL~~A~~~g~~eivk  246 (677)
                      +++..+..                  .|+||||+|+..|+.+++++|+. .|+++ +..+..|.||||+|+..++.++++
T Consensus        85 din~~d~~------------------~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~  145 (166)
T PHA02743         85 DINARELG------------------TGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMME  145 (166)
T ss_pred             CCCCCCCC------------------CCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHH
Confidence            88765421                  13688888888888888888885 78887 668888888888888888888888


Q ss_pred             HHHhcCCCCCCCCCCCC
Q 005790          247 DLIASFDIINSTDHQGN  263 (677)
Q Consensus       247 ~Ll~~ga~in~~d~~g~  263 (677)
                      +|+++|++++.++..|.
T Consensus       146 ~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        146 ILRANGAVCDDPLSIGL  162 (166)
T ss_pred             HHHHcCCCCCCcccCCc
Confidence            88888888888876653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=8.9e-19  Score=180.23  Aligned_cols=159  Identities=15%  Similarity=0.095  Sum_probs=125.3

Q ss_pred             cCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHh
Q 005790          137 GEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLE  216 (677)
Q Consensus       137 ~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~  216 (677)
                      ..|..|.|+++++|++.|+.+++++|+++|++++..+..               .+..|.||||+|+..++.+++++|++
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~---------------sd~~g~TpLh~Aa~~~~~eivklLL~   91 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPL---------------SENSKTNPLIYAIDCDNDDAAKLLIR   91 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcc---------------cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            367888899888888989999999999999998865320               01124789999999999999999999


Q ss_pred             cCCCcccc-CCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCC
Q 005790          217 NCTDVLTY-RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTS  295 (677)
Q Consensus       217 ~ga~~~~~-~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~  295 (677)
                      +|+++ +. .+..|.||||+|+..++.+++++|+++|++++..|..|.||||+|+..++.+++..+...      ..+..
T Consensus        92 ~GADV-N~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~  164 (300)
T PHA02884         92 YGADV-NRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN------EISNF  164 (300)
T ss_pred             cCCCc-CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC------ccccc
Confidence            99998 55 356799999999999999999999999999999999999999999998888887665421      14566


Q ss_pred             CCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccc
Q 005790          296 GETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQI  330 (677)
Q Consensus       296 g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~  330 (677)
                      +.+|++++.             +.+++++|+++..
T Consensus       165 ~~~~~~~~~-------------n~ei~~~Lish~v  186 (300)
T PHA02884        165 YKHPKKILI-------------NFDILKILVSHFI  186 (300)
T ss_pred             ccChhhhhc-------------cHHHHHHHHHHHH
Confidence            677777642             2456666666553

>PHA02741 hypothetical protein; Provisional

Probab=99.78  E-value=1.3e-18  Score=166.54  Aligned_cols=131  Identities=24%  Similarity=0.404  Sum_probs=97.0

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHh------cCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHHhCCCCccccC
Q 005790          224 YRDKQGSTILHAAAGRGQVEVVKDLIA------SFDIINSTDHQGNTPLHIAAYRGQ----PAVVEALILASPSMISVKN  293 (677)
Q Consensus       224 ~~d~~g~TpL~~A~~~g~~eivk~Ll~------~ga~in~~d~~g~tpL~~A~~~g~----~~iv~~LL~~g~~~~~~~~  293 (677)
                      .++..|.||||+|+..|+.+++++|+.      .|++++.+|..|.||||+|+..|+    .+++++|++.|+       
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga-------   88 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA-------   88 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC-------
Confidence            456677788888888888888877753      356777777777777777777777    366666666552       


Q ss_pred             CCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCC-CCchHHHHHHhCCCcHHHHHHHhhCCCCCc
Q 005790          294 TSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNN-DGRTALHMAITGNVHLELVQLLMSAPSINV  372 (677)
Q Consensus       294 ~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~-~G~TpLh~A~~~~~~~eiv~lLL~~~Gadi  372 (677)
                                                                ++|.++. .|.||||+|+..+ +.+++++|+...|+++
T Consensus        89 ------------------------------------------din~~~~~~g~TpLh~A~~~~-~~~iv~~Ll~~~g~~~  125 (169)
T PHA02741         89 ------------------------------------------DINAQEMLEGDTALHLAAHRR-DHDLAEWLCCQPGIDL  125 (169)
T ss_pred             ------------------------------------------CCCCCCcCCCCCHHHHHHHcC-CHHHHHHHHhCCCCCC
Confidence                                                      2555564 7888888888887 8899999986358899


Q ss_pred             cccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCC
Q 005790          373 NVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI  408 (677)
Q Consensus       373 n~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gad  408 (677)
                      +..|..|+||||+|+..++.+    ++++|++.++-
T Consensus       126 ~~~n~~g~tpL~~A~~~~~~~----iv~~L~~~~~~  157 (169)
T PHA02741        126 HFCNADNKSPFELAIDNEDVA----MMQILREIVAT  157 (169)
T ss_pred             CcCCCCCCCHHHHHHHCCCHH----HHHHHHHHHHH
Confidence            988889999999999988876    45555555443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.77  E-value=3.7e-18  Score=154.03  Aligned_cols=146  Identities=24%  Similarity=0.300  Sum_probs=120.6

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 005790          197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPA  276 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~  276 (677)
                      ..+.+|+..+.+..|+.||+..++..+.+|.+|.||||.|+.+|+.+||+.|+..||+++.+...|+||||.||.-.+.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            46789999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCC
Q 005790          277 VVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNV  356 (677)
Q Consensus       277 iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~  356 (677)
                      ++-+||++| ++++.....                                                ..||||+||....
T Consensus       145 va~~LLqhg-aDVnA~t~g------------------------------------------------~ltpLhlaa~~rn  175 (228)
T KOG0512|consen  145 VAGRLLQHG-ADVNAQTKG------------------------------------------------LLTPLHLAAGNRN  175 (228)
T ss_pred             HHHHHHhcc-Ccccccccc------------------------------------------------cchhhHHhhcccc
Confidence            999999999 555554444                                                4455555554443


Q ss_pred             cHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCC
Q 005790          357 HLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQ  391 (677)
Q Consensus       357 ~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~  391 (677)
                      ....+.+|+...++++...+..+.||+++|...+-
T Consensus       176 ~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  176 SRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            55666666665677777777777777777766543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.77  E-value=4.3e-18  Score=175.16  Aligned_cols=148  Identities=17%  Similarity=0.144  Sum_probs=125.4

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCccccC----CCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHH
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTYR----DKQGSTILHAAAGRGQVEVVKDLIASFDIINST-DHQGNTPLHIAA  270 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~----d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~-d~~g~tpL~~A~  270 (677)
                      .++||.|+..|+.+++++|+++|+++ +.+    +..|.||||+|+..++.+++++|+++|++++.. +..|.||||+|+
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa  112 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISV  112 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHH
Confidence            46888899999999999999999999 555    468999999999999999999999999999986 467999999999


Q ss_pred             HcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHH
Q 005790          271 YRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM  350 (677)
Q Consensus       271 ~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~  350 (677)
                      ..++.+++++|++.| ++++.++..|.||||+|+..++..          ++..+..          +..+..+.+|+++
T Consensus       113 ~~~~~eivklLL~~G-Adin~kd~~G~TpL~~A~~~~~~~----------~~~~~~~----------~~~~~~~~~~~~~  171 (300)
T PHA02884        113 LHGCLKCLEILLSYG-ADINIQTNDMVTPIELALMICNNF----------LAFMICD----------NEISNFYKHPKKI  171 (300)
T ss_pred             HcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHhCChh----------HHHHhcC----------CcccccccChhhh
Confidence            999999999999999 789999999999999999854443          2222221          1236678889987


Q ss_pred             HHhCCCcHHHHHHHhhCCCC
Q 005790          351 AITGNVHLELVQLLMSAPSI  370 (677)
Q Consensus       351 A~~~~~~~eiv~lLL~~~Ga  370 (677)
                      +   + +.+++++|++ +++
T Consensus       172 ~---~-n~ei~~~Lis-h~v  186 (300)
T PHA02884        172 L---I-NFDILKILVS-HFI  186 (300)
T ss_pred             h---c-cHHHHHHHHH-HHH
Confidence            6   3 7899999999 776

>PHA02741 hypothetical protein; Provisional

Probab=99.76  E-value=8.3e-18  Score=160.97  Aligned_cols=129  Identities=19%  Similarity=0.197  Sum_probs=73.1

Q ss_pred             hhcCCCChHHHHHHHcCCHHHHHHHHHcC-----CCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCC
Q 005790          103 IRAGYGGWLLYTAASAGDLGFVKQLLDKN-----PLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGG  177 (677)
Q Consensus       103 ~~d~~G~t~L~~Aa~~g~~eivk~LL~~g-----~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~  177 (677)
                      .++..|.||||+|+..|+.++|+.|+...     ...++..|..|.||||+|                            
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A----------------------------   67 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIA----------------------------   67 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHH----------------------------
Confidence            35566777777777777777777765421     113444455555555555                            


Q ss_pred             cchhhhhcchhhhhhhccchHHHHHHhcCC----HHHHHHHHhcCCCccccCCC-CCCcHHHHHHHhCCHHHHHHHHh-c
Q 005790          178 ELEEHIEEIPSVYKWEMMNRAVHAAARGGN----LKILKELLENCTDVLTYRDK-QGSTILHAAAGRGQVEVVKDLIA-S  251 (677)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~----~eivk~LL~~ga~~~~~~d~-~g~TpL~~A~~~g~~eivk~Ll~-~  251 (677)
                                               +..|+    .+++++|++.|+++ +.++. .|+||||+|+..++.+++++|+. .
T Consensus        68 -------------------------~~~g~~~~~~~ii~~Ll~~gadi-n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~  121 (169)
T PHA02741         68 -------------------------AEKHEAQLAAEIIDHLIELGADI-NAQEMLEGDTALHLAAHRRDHDLAEWLCCQP  121 (169)
T ss_pred             -------------------------HHcCChHHHHHHHHHHHHcCCCC-CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence                                     44444    34555555555555 33442 55566666666666666666554 3


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 005790          252 FDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS  285 (677)
Q Consensus       252 ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g  285 (677)
                      |++++..|..|.||||+|+..++.+++++|++.+
T Consensus       122 g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741        122 GIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            5555555555666666666666666666555543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.75  E-value=3.3e-18  Score=161.26  Aligned_cols=136  Identities=21%  Similarity=0.251  Sum_probs=95.1

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHhCC------CCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHccc
Q 005790          256 NSTDHQGNTPLHIAAYRGQPAVVEALILASP------SMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQ  329 (677)
Q Consensus       256 n~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~------~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~  329 (677)
                      +..|..|.||||+|++.|+.  +++++..+.      ..++..|..|.||||+|+..+..+       ..+++++|++.+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~-------~~e~v~~Ll~~g   81 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKAD-------PQEKLKLLMEWG   81 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchh-------HHHHHHHHHHcC
Confidence            34455666666666666652  222221110      112345667777777777654321       234556665554


Q ss_pred             ccchhhhhhccC-CCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCC
Q 005790          330 IFNMEDIINAKN-NDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI  408 (677)
Q Consensus       330 ~~~~~~~in~~d-~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gad  408 (677)
                           +++|.++ ..|.||||+|+..+ +.+++++|+...|++++.+|..|+||||+|+..++.+    ++++|+++|++
T Consensus        82 -----adin~~~~~~g~T~Lh~A~~~~-~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~----i~~~Ll~~ga~  151 (154)
T PHA02736         82 -----ADINGKERVFGNTPLHIAVYTQ-NYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAK----MMNILRAKGAQ  151 (154)
T ss_pred             -----CCccccCCCCCCcHHHHHHHhC-CHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHH----HHHHHHHcCCC
Confidence                 4477787 48999999999988 9999999997459999999999999999999999876    68889999988


Q ss_pred             CC
Q 005790          409 FG  410 (677)
Q Consensus       409 in  410 (677)
                      ++
T Consensus       152 ~~  153 (154)
T PHA02736        152 CK  153 (154)
T ss_pred             CC
Confidence            75

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.73  E-value=1.7e-17  Score=156.37  Aligned_cols=134  Identities=15%  Similarity=0.074  Sum_probs=70.5

Q ss_pred             CchhhcCCCChHHHHHHHcCCHHHHHHHHHcCC------CccccCCCCCCCHHHHHHHhcCCH---HHHHHHHhcCCCcc
Q 005790          100 NSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNP------LLVFGEGEYGVTDIFYAAARSKNC---DVFRLIYDFAVSPR  170 (677)
Q Consensus       100 ~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~------~~~~~~~~~g~tpL~~AA~~~g~~---evv~lLl~~Gad~~  170 (677)
                      ..+.+|..|.||||+||..|+.  +.+++..+.      ..+...+..|.||||+|| ..|+.   +++++|+++|++++
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~-~~~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVS-NPDKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeec-ccCchhHHHHHHHHHHcCCCcc
Confidence            3455677888899988888873  333332221      112234556666666664 44443   34555555555554


Q ss_pred             cccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHh-cCCCccccCCCCCCcHHHHHHHhCCHHHHHHHH
Q 005790          171 FLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLE-NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI  249 (677)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~-~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll  249 (677)
                      ..+..                  .|+||||+|+..|+.+++++|+. .|+++ +..+..|.||||+|+..|+.+++++|+
T Consensus        86 ~~~~~------------------~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll  146 (154)
T PHA02736         86 GKERV------------------FGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILR  146 (154)
T ss_pred             ccCCC------------------CCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            33211                  12455555555555555555554 24444 445555555555555555555555555


Q ss_pred             hcCCCC
Q 005790          250 ASFDII  255 (677)
Q Consensus       250 ~~ga~i  255 (677)
                      ++|+++
T Consensus       147 ~~ga~~  152 (154)
T PHA02736        147 AKGAQC  152 (154)
T ss_pred             HcCCCC
Confidence            555543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.72  E-value=6.9e-17  Score=145.90  Aligned_cols=142  Identities=24%  Similarity=0.221  Sum_probs=110.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhh
Q 005790          111 LLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVY  190 (677)
Q Consensus       111 ~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~  190 (677)
                      .+.+|+..+.+..|+.||+..+..++.+|.+|+||||.|+ ++|+.+||+.|+..||+++.....|              
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAa-Yn~h~div~~ll~~gAn~~a~T~~G--------------  130 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAA-YNGHLDIVHELLLSGANKEAKTNEG--------------  130 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHH-hcCchHHHHHHHHccCCcccccccC--------------
Confidence            4778999999999999999999999999999999999984 8888888888888888877665543              


Q ss_pred             hhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCC-HHHHHHHHh-cCCCCCCCCCCCCcHHHH
Q 005790          191 KWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQ-VEVVKDLIA-SFDIINSTDHQGNTPLHI  268 (677)
Q Consensus       191 ~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~-~eivk~Ll~-~ga~in~~d~~g~tpL~~  268 (677)
                           +||||-||...+.+++-+||++|+|+ +......+||||+||...+ ...+.+|+. .+..+...+..+.||+.+
T Consensus       131 -----WTPLhSAckWnN~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~i  204 (228)
T KOG0512|consen  131 -----WTPLHSACKWNNFEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDI  204 (228)
T ss_pred             -----ccchhhhhcccchhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHH
Confidence                 67888888888888888888888877 6666677788887776554 344555543 556666667777777777


Q ss_pred             HHHcC
Q 005790          269 AAYRG  273 (677)
Q Consensus       269 A~~~g  273 (677)
                      |-+.+
T Consensus       205 ARRT~  209 (228)
T KOG0512|consen  205 ARRTS  209 (228)
T ss_pred             HHHhh
Confidence            77665

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.70  E-value=1.1e-17  Score=162.16  Aligned_cols=156  Identities=30%  Similarity=0.353  Sum_probs=126.0

Q ss_pred             HhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005790          203 ARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI  282 (677)
Q Consensus       203 ~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL  282 (677)
                      |+.|+.--|++.|+.-...++..|..|.+|||+||+.|+..+|+.|+..|+.+|..+....||||+|+.+|+.++|+.||
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence            44555444555555444444888999999999999999999999999999999999998899999999999999999999


Q ss_pred             HhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHH
Q 005790          283 LASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQ  362 (677)
Q Consensus       283 ~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~  362 (677)
                      +..+ +                                                +|..+..|.|||||||..| ...+.+
T Consensus        88 ~~ka-d------------------------------------------------vnavnehgntplhyacfwg-ydqiae  117 (448)
T KOG0195|consen   88 SRKA-D------------------------------------------------VNAVNEHGNTPLHYACFWG-YDQIAE  117 (448)
T ss_pred             HHhc-c------------------------------------------------cchhhccCCCchhhhhhhc-HHHHHH
Confidence            8772 2                                                6677888999999999998 999999


Q ss_pred             HHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCc
Q 005790          363 LLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQD  413 (677)
Q Consensus       363 lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d  413 (677)
                      -|+. .||.+++.+.+|+|||..|.-.-    -+.|.+.--++|-.+|...
T Consensus       118 dli~-~ga~v~icnk~g~tpldkakp~l----~~~l~e~aek~gq~~nrip  163 (448)
T KOG0195|consen  118 DLIS-CGAAVNICNKKGMTPLDKAKPML----KNTLLEIAEKHGQSPNRIP  163 (448)
T ss_pred             HHHh-ccceeeecccCCCCchhhhchHH----HHHHHHHHHHhCCCCCccc
Confidence            9999 99999999999999999874321    2235555567787777543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.69  E-value=3.8e-16  Score=171.86  Aligned_cols=240  Identities=18%  Similarity=0.142  Sum_probs=177.1

Q ss_pred             ccHHHHHhhchHHHHHHHHhhhhc-----CCCCchhhcCCCChHHHHHHH---cCCHHHHHHHHHcCCCcccc----CCC
Q 005790           73 EQFDDVAKCRSKVARKLFLECKSK-----NGKNSLIRAGYGGWLLYTAAS---AGDLGFVKQLLDKNPLLVFG----EGE  140 (677)
Q Consensus        73 ~~l~~A~~~~~~~v~~lLl~~~~~-----~g~~~~~~d~~G~t~L~~Aa~---~g~~eivk~LL~~g~~~~~~----~~~  140 (677)
                      ..+..+...+......-|.....+     ..-+++.+...|.|.||.|..   .++.++++.||+..+..++.    ..-
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            445555555554444444432211     124667778889999999997   45679999999998765553    345


Q ss_pred             CCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh----hcchhhhhhhccchHHHHHHhcCCHHHHHHHHh
Q 005790          141 YGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI----EEIPSVYKWEMMNRAVHAAARGGNLKILKELLE  216 (677)
Q Consensus       141 ~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~----~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~  216 (677)
                      +|.||||+| +.+.+.++|++|++.|||++..........+..    ...+.......|..||-+||..++.|++++|++
T Consensus       183 ~GqSaLHiA-Iv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  183 YGQSALHIA-IVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             cCcchHHHH-HHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            699999998 566999999999999999996543211110000    111112224567899999999999999999999


Q ss_pred             cCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHh-CCC------
Q 005790          217 NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI--INSTDHQGNTPLHIAAYRGQPAVVEALILA-SPS------  287 (677)
Q Consensus       217 ~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~--in~~d~~g~tpL~~A~~~g~~~iv~~LL~~-g~~------  287 (677)
                      +|+|+ +.+|..|+|.||..+..-..++..+++++|++  ...++.+|.|||.+|++-|..++.+.+++. ...      
T Consensus       262 ~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGp  340 (782)
T KOG3676|consen  262 HGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGP  340 (782)
T ss_pred             cCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecc
Confidence            99999 89999999999999999999999999999999  888999999999999999999999999998 211      


Q ss_pred             ------CccccCC--CCCchhhhhhhcCchHHHHH
Q 005790          288 ------MISVKNT--SGETFLHSAVSGFQTYAFRR  314 (677)
Q Consensus       288 ------~~~~~~~--~g~tpLh~A~~~~~~~~~~~  314 (677)
                            +.+..|.  +..++|...+.+...+....
T Consensus       341 vtsslYpL~~iDT~~n~~SvLeivvyg~~~eHl~L  375 (782)
T KOG3676|consen  341 VTSSLYPLNSIDTIGNENSVLEIVVYGIKNEHLEL  375 (782)
T ss_pred             cccccccchhcccccchhhhhhhhhcCCcHHHHHH
Confidence                  1122222  45678888887744433333

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.65  E-value=2.7e-16  Score=152.54  Aligned_cols=159  Identities=25%  Similarity=0.274  Sum_probs=125.3

Q ss_pred             HHhCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHh
Q 005790          237 AGRGQVEVVKDLI-ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRL  315 (677)
Q Consensus       237 ~~~g~~eivk~Ll-~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L  315 (677)
                      |+.|+.--|++-| +...|.|.-|..|.+|||+|++.|+..+++.||..|+.                            
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgar----------------------------   59 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR----------------------------   59 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc----------------------------
Confidence            3344433333333 34557777888888888888888888888888888832                            


Q ss_pred             hHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchH
Q 005790          316 DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASS  395 (677)
Q Consensus       316 ~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~  395 (677)
                                           +|..+....||||+|+..| |-++|+.||+ ..+|+|+.+..|+|||||||.+|...  
T Consensus        60 ---------------------vn~tnmgddtplhlaaahg-hrdivqkll~-~kadvnavnehgntplhyacfwgydq--  114 (448)
T KOG0195|consen   60 ---------------------VNSTNMGDDTPLHLAAAHG-HRDIVQKLLS-RKADVNAVNEHGNTPLHYACFWGYDQ--  114 (448)
T ss_pred             ---------------------cccccCCCCcchhhhhhcc-cHHHHHHHHH-HhcccchhhccCCCchhhhhhhcHHH--
Confidence                                 6666777789999999988 9999999999 99999999999999999999999855  


Q ss_pred             HHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCCCCCCC
Q 005790          396 DILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANS  460 (677)
Q Consensus       396 ~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~~~g~  460 (677)
                        +.+-|+..||-++.-+++|.|||..|-.+..          ..+.++--++|-+++.....+.
T Consensus       115 --iaedli~~ga~v~icnk~g~tpldkakp~l~----------~~l~e~aek~gq~~nripfkdt  167 (448)
T KOG0195|consen  115 --IAEDLISCGAAVNICNKKGMTPLDKAKPMLK----------NTLLEIAEKHGQSPNRIPFKDT  167 (448)
T ss_pred             --HHHHHHhccceeeecccCCCCchhhhchHHH----------HHHHHHHHHhCCCCCccccccc
Confidence              7899999999999999999999987654422          3345555678999886554443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.65  E-value=1.2e-15  Score=167.86  Aligned_cols=199  Identities=22%  Similarity=0.164  Sum_probs=158.9

Q ss_pred             CchhhcCCCChHHHHHHHcCCHHHHHHHHHcC--------CCccccCCCCCCCHHHHHHH--hcCCHHHHHHHHhcCCCc
Q 005790          100 NSLIRAGYGGWLLYTAASAGDLGFVKQLLDKN--------PLLVFGEGEYGVTDIFYAAA--RSKNCDVFRLIYDFAVSP  169 (677)
Q Consensus       100 ~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g--------~~~~~~~~~~g~tpL~~AA~--~~g~~evv~lLl~~Gad~  169 (677)
                      .++..+...+.++..|...+.++....|+..+        ...++.++.-|.|.||.|..  ..++.++++.|++.-  |
T Consensus        93 ~p~~l~~~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~--p  170 (782)
T KOG3676|consen   93 GPNILKRFDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIF--P  170 (782)
T ss_pred             CcchhhhcchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHh--H
Confidence            33434434447889999999999988888765        24566778889999999876  567789999999852  2


Q ss_pred             ccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCcccc--------C--------------CC
Q 005790          170 RFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTY--------R--------------DK  227 (677)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~--------~--------------d~  227 (677)
                      ....            .........|+||||+|+.+.+.++|++|++.|||+...        .              -.
T Consensus       171 ~lin------------d~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~Y  238 (782)
T KOG3676|consen  171 KLIN------------DIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFY  238 (782)
T ss_pred             HHhh------------hhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceee
Confidence            2211            122234456899999999999999999999999998311        1              12


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC--ccccCCCCCchhhhhhh
Q 005790          228 QGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM--ISVKNTSGETFLHSAVS  305 (677)
Q Consensus       228 ~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~--~~~~~~~g~tpLh~A~~  305 (677)
                      .|..||-+||..++.+++++|+++|||++.+|..|+|.||..+..-..++..+++++| +.  ...+|..|.|||.+|+.
T Consensus       239 fGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~g-a~~l~~v~N~qgLTPLtLAak  317 (782)
T KOG3676|consen  239 FGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELG-ANALEHVRNNQGLTPLTLAAK  317 (782)
T ss_pred             eccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcC-CCccccccccCCCChHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999998 45  77899999999999999


Q ss_pred             cCchHHHH
Q 005790          306 GFQTYAFR  313 (677)
Q Consensus       306 ~~~~~~~~  313 (677)
                      -|..++++
T Consensus       318 lGk~emf~  325 (782)
T KOG3676|consen  318 LGKKEMFQ  325 (782)
T ss_pred             hhhHHHHH
Confidence            44444433

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.63  E-value=1.8e-15  Score=128.40  Aligned_cols=89  Identities=44%  Similarity=0.606  Sum_probs=80.7

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 005790          199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVV  278 (677)
Q Consensus       199 Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv  278 (677)
                      ||+|++.|+.+++++|++.+.++ +.    |.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            79999999999999999999887 33    88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCccccC
Q 005790          279 EALILASPSMISVKN  293 (677)
Q Consensus       279 ~~LL~~g~~~~~~~~  293 (677)
                      ++|+++| .+++.+|
T Consensus        76 ~~Ll~~g-~~~~~~n   89 (89)
T PF12796_consen   76 KLLLEHG-ADVNIRN   89 (89)
T ss_dssp             HHHHHTT-T-TTSS-
T ss_pred             HHHHHcC-CCCCCcC
Confidence            9999998 5666543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.59  E-value=8.3e-15  Score=124.31  Aligned_cols=89  Identities=40%  Similarity=0.583  Sum_probs=53.8

Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHH
Q 005790          233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAF  312 (677)
Q Consensus       233 L~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~  312 (677)
                      ||+||+.|+++++++|++.+.+++.    |.||||+|+..|+.+++++|++.|. +                        
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~-~------------------------   51 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGA-D------------------------   51 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTT-C------------------------
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcc-c------------------------
Confidence            5666666666666666666665555    5566666666666666666666552 1                        


Q ss_pred             HHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccC
Q 005790          313 RRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRD  376 (677)
Q Consensus       313 ~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d  376 (677)
                                              ++.+|..|.||||+|+..+ +.+++++|++ .|+++|.+|
T Consensus        52 ------------------------~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~-~g~~~~~~n   89 (89)
T PF12796_consen   52 ------------------------INSQDKNGNTALHYAAENG-NLEIVKLLLE-HGADVNIRN   89 (89)
T ss_dssp             ------------------------TT-BSTTSSBHHHHHHHTT-HHHHHHHHHH-TTT-TTSS-
T ss_pred             ------------------------ccccCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCCcC
Confidence                                    3444556666666666655 6666666666 566666553

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.56  E-value=8.7e-14  Score=124.66  Aligned_cols=85  Identities=46%  Similarity=0.640  Sum_probs=51.1

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP  275 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~  275 (677)
                      .+|||.|+..++.+++++|++.|+++ +..+..|.||+|+|+..++.+++++|++.|.+++..+..+.||+++|+..++.
T Consensus        41 ~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~  119 (126)
T cd00204          41 RTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL  119 (126)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCH
Confidence            35555555555555666666655544 44455566666666666666666666666666666666666666666666666


Q ss_pred             HHHHHH
Q 005790          276 AVVEAL  281 (677)
Q Consensus       276 ~iv~~L  281 (677)
                      +++++|
T Consensus       120 ~~~~~L  125 (126)
T cd00204         120 EVVKLL  125 (126)
T ss_pred             HHHHHh
Confidence            666655

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.54  E-value=9.7e-14  Score=124.36  Aligned_cols=120  Identities=37%  Similarity=0.490  Sum_probs=109.1

Q ss_pred             hccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 005790          193 EMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYR  272 (677)
Q Consensus       193 ~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~  272 (677)
                      ..|.||||+|+..++.+++++|++.+.+. +..+..|.||||+|+..++.+++++|++.|++++..+..|.||+|+|+..
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            44689999999999999999999999987 77899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHH
Q 005790          273 GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR  314 (677)
Q Consensus       273 g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~  314 (677)
                      ++.+++++|++.+ .+.+..+..+.||+++|+..++.+.+++
T Consensus        84 ~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~  124 (126)
T cd00204          84 GNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGHLEVVKL  124 (126)
T ss_pred             CcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCHHHHHH
Confidence            9999999999988 6688889999999999999655444443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.46  E-value=2.2e-13  Score=110.60  Aligned_cols=105  Identities=24%  Similarity=0.312  Sum_probs=94.5

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 005790          197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPA  276 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~  276 (677)
                      .-+.+++.+|.++-|+..+..|-+++.  -..|++|||+|+-.|+++++++|+..|++++.+|+.|.|||-.|+..||.+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~--~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNE--IYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHH--HhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            457899999999999999999988743  348999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCccccCCCCCchhhhhh
Q 005790          277 VVEALILASPSMISVKNTSGETFLHSAV  304 (677)
Q Consensus       277 iv~~LL~~g~~~~~~~~~~g~tpLh~A~  304 (677)
                      +|++||+.| ++-.....+|.+.+..+-
T Consensus        82 cVklLL~~G-Adrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   82 CVKLLLQNG-ADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHHHcC-cccceeCCCchhHHhhcc
Confidence            999999999 667788888887766543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.45  E-value=2.6e-12  Score=127.68  Aligned_cols=132  Identities=29%  Similarity=0.318  Sum_probs=119.1

Q ss_pred             ccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCC-----H
Q 005790          134 LVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGN-----L  208 (677)
Q Consensus       134 ~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~-----~  208 (677)
                      .....+..+.+++++++ ..+..+++++|++.|++++..+..|                   .||||+|+..++     .
T Consensus        65 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~g-------------------~t~l~~a~~~~~~~~~~~  124 (235)
T COG0666          65 HLAARDLDGRLPLHSAA-SKGDDKIVKLLLASGADVNAKDADG-------------------DTPLHLAALNGNPPEGNI  124 (235)
T ss_pred             ccccCCccccCHHHHHH-HcCcHHHHHHHHHcCCCcccccCCC-------------------CcHHHHHHhcCCcccchH
Confidence            34456677889999985 6699999999999999987666554                   689999999999     9


Q ss_pred             HHHHHHHhcCC--CccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 005790          209 KILKELLENCT--DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS  285 (677)
Q Consensus       209 eivk~LL~~ga--~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g  285 (677)
                      +++++|++.|+  ++.+..+..|.||||+|+..|+.+++++|++.|++++..+..|.|++++|+..++.+++..++..+
T Consensus       125 ~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         125 EVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999  676888999999999999999999999999999999999999999999999999999999999875

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.44  E-value=1.8e-12  Score=128.78  Aligned_cols=132  Identities=35%  Similarity=0.528  Sum_probs=114.4

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHHhCCCCccccCCCCC
Q 005790          223 TYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ-----PAVVEALILASPSMISVKNTSGE  297 (677)
Q Consensus       223 ~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~-----~~iv~~LL~~g~~~~~~~~~~g~  297 (677)
                      ...+..+.++++.++..+..+++++|+..|++++..+..|.||||+|+..++     .+++++|++.|..          
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~----------  136 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD----------  136 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC----------
Confidence            5567788999999999999999999999999999999999999999999999     8999999988842          


Q ss_pred             chhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCC
Q 005790          298 TFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN  377 (677)
Q Consensus       298 tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~  377 (677)
                                                          ..+.+.+|..|.||||+|+..+ +.+++++|++ .|++++.++.
T Consensus       137 ------------------------------------~~~~~~~~~~g~tpl~~A~~~~-~~~~~~~ll~-~~~~~~~~~~  178 (235)
T COG0666         137 ------------------------------------LDVNNLRDEDGNTPLHWAALNG-DADIVELLLE-AGADPNSRNS  178 (235)
T ss_pred             ------------------------------------CCCccccCCCCCchhHHHHHcC-chHHHHHHHh-cCCCCccccc
Confidence                                                0114556888999999999988 8899999999 8999999999


Q ss_pred             CCCcHHHHHhhCCCCchHHHHHHHHHHcC
Q 005790          378 DGMTTLDLLKQRPQSASSDILIRHLISAG  406 (677)
Q Consensus       378 ~G~TpL~~A~~~~~~~~~~~lv~~Ll~~G  406 (677)
                      .|.|++++|+..++.+    +++.+++.+
T Consensus       179 ~g~t~l~~a~~~~~~~----~~~~l~~~~  203 (235)
T COG0666         179 YGVTALDPAAKNGRIE----LVKLLLDKG  203 (235)
T ss_pred             CCCcchhhhcccchHH----HHHHHHhcC
Confidence            9999999999999987    466666654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=2.7e-12  Score=134.08  Aligned_cols=120  Identities=25%  Similarity=0.274  Sum_probs=103.6

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 005790          198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAV  277 (677)
Q Consensus       198 ~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~i  277 (677)
                      .|.-|+..|.+++|+..+..-.|+ ...+..|.|+||-|+..||++||++||+.|+++|..|.+|+||||+|+..++..+
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            455688999999999999988888 7789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHH
Q 005790          278 VEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLA  326 (677)
Q Consensus       278 v~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll  326 (677)
                      ++.|++.|++.....-.++.|+..-+-.        +-.+...+.++|.
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee--------~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEE--------MEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcch--------hhhhHHHHHHHHH
Confidence            9999999988777777788887765433        1245556666653

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.35  E-value=3.9e-12  Score=103.37  Aligned_cols=103  Identities=19%  Similarity=0.183  Sum_probs=88.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCcccc
Q 005790          145 DIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTY  224 (677)
Q Consensus       145 pL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~  224 (677)
                      .+.|+ +++|..+-|+-.+..|.++|..-                    .|++|||+|+..|.++++++|+..|+++ +.
T Consensus         5 ~~~W~-vkNG~~DeVk~~v~~g~nVn~~~--------------------ggR~plhyAAD~GQl~ilefli~iGA~i-~~   62 (117)
T KOG4214|consen    5 SVAWN-VKNGEIDEVKQSVNEGLNVNEIY--------------------GGRTPLHYAADYGQLSILEFLISIGANI-QD   62 (117)
T ss_pred             hHhhh-hccCcHHHHHHHHHccccHHHHh--------------------CCcccchHhhhcchHHHHHHHHHhcccc-CC
Confidence            35666 68899999988888887666332                    2579999999999999999999999999 88


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 005790          225 RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA  269 (677)
Q Consensus       225 ~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A  269 (677)
                      +|.+|.|||..|+..||.++|++||+.|++-.....+|.+.+..+
T Consensus        63 kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   63 KDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             ccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            999999999999999999999999999999888888887665543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.27  E-value=9e-12  Score=94.93  Aligned_cols=54  Identities=44%  Similarity=0.573  Sum_probs=36.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005790          229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI  282 (677)
Q Consensus       229 g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL  282 (677)
                      |+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567777777777777777777777777777777777777777777777777775

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.27  E-value=2.1e-11  Score=140.77  Aligned_cols=106  Identities=26%  Similarity=0.261  Sum_probs=96.9

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 005790          197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPA  276 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~  276 (677)
                      ..|+.|+..|+.++++.|++.|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            5799999999999999999999998 788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-------CCCCccccCCCCCchhhhhh
Q 005790          277 VVEALILA-------SPSMISVKNTSGETFLHSAV  304 (677)
Q Consensus       277 iv~~LL~~-------g~~~~~~~~~~g~tpLh~A~  304 (677)
                      ++++|+.+       + ++.+..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~g-a~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELG-ANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccC-CCCCccccCCCCccchhh
Confidence            99999998       4 556667777777766554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.24  E-value=2.6e-11  Score=139.97  Aligned_cols=107  Identities=22%  Similarity=0.237  Sum_probs=77.2

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHH
Q 005790          232 ILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYA  311 (677)
Q Consensus       232 pL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~  311 (677)
                      .|+.|+..|+.+++++|+++|+++|..|..|.||||+|+..|+.+++++|++.| ++++..|..|.||||+|+.      
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G-advn~~d~~G~TpLh~A~~------  157 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAEE------  157 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHH------
Confidence            588999999999999999999999999999999999999999999999999998 5566666666666666665      


Q ss_pred             HHHhhHHHHHHHHHHccc--ccchhhhhhccCCCCchHHH
Q 005790          312 FRRLDRQVKLMKQLASGQ--IFNMEDIINAKNNDGRTALH  349 (677)
Q Consensus       312 ~~~L~~~~eiv~~Ll~~~--~~~~~~~in~~d~~G~TpLh  349 (677)
                          .++.+++++|+.++  ..+.+++++..+..|.+|+.
T Consensus       158 ----~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~  193 (664)
T PTZ00322        158 ----NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSL  193 (664)
T ss_pred             ----CCcHHHHHHHHhCCCcccccCCCCCccccCCCCccc
Confidence                33344444444431  12223344444455555544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.23  E-value=4.9e-11  Score=116.44  Aligned_cols=130  Identities=21%  Similarity=0.228  Sum_probs=115.6

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHcCC
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST-DHQGNTPLHIAAYRGQ  274 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~-d~~g~tpL~~A~~~g~  274 (677)
                      +.+|..++..|..+....||..-.++ +.+|..|.++|..|+..|+.++|++||+.|+|+|.. +..+.||||+|+..|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            57999999999999999999986666 889999999999999999999999999999999965 4568999999999999


Q ss_pred             HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHH--HHHHHHHHc
Q 005790          275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQ--VKLMKQLAS  327 (677)
Q Consensus       275 ~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~--~eiv~~Ll~  327 (677)
                      .++..+|++.| +.....+.-|+|+-.+|+.-|+.+++..++++  .+.++++.+
T Consensus        92 ~dvcrllldaG-a~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t~~~leyyt~  145 (396)
T KOG1710|consen   92 QDVCRLLLDAG-ARMYLVNSVGRTAAQMAAFVGHHECVAIINNHITIDVLEYYTR  145 (396)
T ss_pred             chHHHHHHhcc-CccccccchhhhHHHHHHHhcchHHHHHHhccccHHHHHHhcc
Confidence            99999999999 66888999999999999999999999888665  445566554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.23  E-value=1e-11  Score=95.26  Aligned_cols=55  Identities=47%  Similarity=0.565  Sum_probs=28.7

Q ss_pred             HHhcC-CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 005790          214 LLENC-TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA  269 (677)
Q Consensus       214 LL~~g-a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A  269 (677)
                      ||++| .++ +..|..|.||||+||..|+.++|++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~-n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADV-NAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--T-T---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCC-cCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 444 77888888888888888888888888888888888888888888876

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=3.1e-11  Score=126.23  Aligned_cols=119  Identities=24%  Similarity=0.208  Sum_probs=99.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCcccc
Q 005790          145 DIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTY  224 (677)
Q Consensus       145 pL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~  224 (677)
                      +|+.-|+..|.+|+|+-.+..--||...+..                   |.|+||-|+..||.+||++||+.|+++ |.
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdE-------------------GITaLHNAiCaghyeIVkFLi~~ganV-Na  611 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDE-------------------GITALHNAICAGHYEIVKFLIEFGANV-NA  611 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCcc-------------------chhHHhhhhhcchhHHHHHHHhcCCcc-cC
Confidence            4555567789999999998876666544433                   579999999999999999999999999 88


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHH--HHcCCHHHHHHHHH
Q 005790          225 RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD-HQGNTPLHIA--AYRGQPAVVEALIL  283 (677)
Q Consensus       225 ~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d-~~g~tpL~~A--~~~g~~~iv~~LL~  283 (677)
                      .|.+||||||+|+..+++.+++.|+++|+-|-+.. .++.||..-+  ...|..++.+||-.
T Consensus       612 ~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  612 ADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             ccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999876544 5677887665  46788899999964

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.17  E-value=1.4e-10  Score=113.22  Aligned_cols=119  Identities=20%  Similarity=0.151  Sum_probs=101.9

Q ss_pred             CHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccc
Q 005790          144 TDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLT  223 (677)
Q Consensus       144 tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~  223 (677)
                      .||+-+ +-.+..+-+..||.---++|+.|                   +.|.++|..|+..|+.++|++||+.|+|++.
T Consensus        14 ~~Lle~-i~Kndt~~a~~LLs~vr~vn~~D-------------------~sGMs~LahAaykGnl~~v~lll~~gaDvN~   73 (396)
T KOG1710|consen   14 SPLLEA-IDKNDTEAALALLSTVRQVNQRD-------------------PSGMSVLAHAAYKGNLTLVELLLELGADVND   73 (396)
T ss_pred             hHHHHH-HccCcHHHHHHHHHHhhhhhccC-------------------CCcccHHHHHHhcCcHHHHHHHHHhCCCcCc
Confidence            567766 34577777777776433344444                   4458999999999999999999999999998


Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005790          224 YRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI  282 (677)
Q Consensus       224 ~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL  282 (677)
                      ..+..+.||||+|+.+|+.++.++|++.|+.+...+.-|+|+-..|+.-|+-++|..+-
T Consensus        74 ~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   74 KQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             ccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999888764

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.17  E-value=5.6e-11  Score=90.55  Aligned_cols=54  Identities=44%  Similarity=0.629  Sum_probs=45.7

Q ss_pred             cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHH
Q 005790          195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI  249 (677)
Q Consensus       195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll  249 (677)
                      |.||||+|+..|+.+++++|+++|.++ +.+|.+|.||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            469999999999999999999999998 777999999999999999999999996

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.17  E-value=1.5e-11  Score=94.39  Aligned_cols=50  Identities=36%  Similarity=0.507  Sum_probs=23.8

Q ss_pred             hhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHH
Q 005790          335 DIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLL  386 (677)
Q Consensus       335 ~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A  386 (677)
                      .++|.+|..|.||||+||..| +.++|++||+ .|+|++.+|..|+||||+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g-~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYG-HSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT--HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcC-cHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            456666777777777777766 7777777775 6777777777777777665

>PF13606 Ank_3: Ankyrin repeat

Probab=98.64  E-value=3e-08  Score=65.17  Aligned_cols=29  Identities=28%  Similarity=0.385  Sum_probs=27.0

Q ss_pred             ccCcHHHHHHHcCCHHHHHHHHHhcCCch
Q 005790           25 WYASPIDWAAANGHYDLVRELLRIDGNHL   53 (677)
Q Consensus        25 ~g~TpL~~Aa~~G~~diV~~LL~~ga~~n   53 (677)
                      +|+||||+||+.|+.|+|++||++|+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36799999999999999999999999986

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.58  E-value=2.7e-08  Score=109.51  Aligned_cols=84  Identities=24%  Similarity=0.292  Sum_probs=48.1

Q ss_pred             hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790          188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH  267 (677)
Q Consensus       188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~  267 (677)
                      .+.++..|+++||+|+..+..+++++||++|.+++-...+.|+||||.|+..|+++++-.||.+|+.+...|.+|..||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            34455555666666666666666666666666553333345566666666666666666666666555555666666655


Q ss_pred             HHHH
Q 005790          268 IAAY  271 (677)
Q Consensus       268 ~A~~  271 (677)
                      .-++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            5443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.54  E-value=2.7e-07  Score=96.53  Aligned_cols=88  Identities=27%  Similarity=0.332  Sum_probs=82.3

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 005790          197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPA  276 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~  276 (677)
                      .-||..++.|++++.-.||..|++++......|.||||.|++.|+.--+++|+-+|||++..|..|+||+.+|-..||-+
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            46999999999999999999999997777789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 005790          277 VVEALILA  284 (677)
Q Consensus       277 iv~~LL~~  284 (677)
                      +.+.|++.
T Consensus       215 laeRl~e~  222 (669)
T KOG0818|consen  215 LAERLVEI  222 (669)
T ss_pred             HHHHHHHH
Confidence            98888764

>PF13606 Ank_3: Ankyrin repeat

Probab=98.49  E-value=1.6e-07  Score=61.66  Aligned_cols=29  Identities=41%  Similarity=0.547  Sum_probs=22.0

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCC
Q 005790          228 QGSTILHAAAGRGQVEVVKDLIASFDIIN  256 (677)
Q Consensus       228 ~g~TpL~~A~~~g~~eivk~Ll~~ga~in  256 (677)
                      +|+||||+||..|+.++|++||++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            46777777777777777777777777776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.41  E-value=8.5e-07  Score=94.01  Aligned_cols=88  Identities=31%  Similarity=0.401  Sum_probs=63.4

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCC-CccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 005790          196 NRAVHAAARGGNLKILKELLENCT-DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ  274 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga-~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~  274 (677)
                      .+.||+|+..|+-|||+++|++|+ ++.+..|..|.|+||.|+..++..+.++|++.|+.+...|..|.||-.-|-+.|+
T Consensus       900 ~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d  979 (1004)
T KOG0782|consen  900 CSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGD  979 (1004)
T ss_pred             hhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCC
Confidence            567777777777777777777776 3445566777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHH
Q 005790          275 PAVVEALIL  283 (677)
Q Consensus       275 ~~iv~~LL~  283 (677)
                      .++..+|-.
T Consensus       980 ~dlaayle~  988 (1004)
T KOG0782|consen  980 PDLAAYLES  988 (1004)
T ss_pred             chHHHHHhh
Confidence            777777654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.39  E-value=2.2e-07  Score=102.55  Aligned_cols=95  Identities=21%  Similarity=0.273  Sum_probs=85.6

Q ss_pred             HHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 005790          210 ILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ-GNTPLHIAAYRGQPAVVEALILASPSM  288 (677)
Q Consensus       210 ivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~-g~tpL~~A~~~g~~~iv~~LL~~g~~~  288 (677)
                      +--++-+.+.+..+..|..|+|+||+|+..+..+++++||++|++++..|.+ |+||||-|++.|+++++-+||.+| ..
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g-~S  111 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG-RS  111 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcC-Cc
Confidence            3344555666666889999999999999999999999999999999999965 999999999999999999999999 67


Q ss_pred             ccccCCCCCchhhhhhh
Q 005790          289 ISVKNTSGETFLHSAVS  305 (677)
Q Consensus       289 ~~~~~~~g~tpLh~A~~  305 (677)
                      ..+.|.+|..||.+.++
T Consensus       112 L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eEEecccCCCHHHHHhh
Confidence            89999999999999887

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.37  E-value=1.3e-06  Score=92.71  Aligned_cols=118  Identities=20%  Similarity=0.242  Sum_probs=91.6

Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHH
Q 005790          233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAF  312 (677)
Q Consensus       233 L~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~  312 (677)
                      |..|+..+++--++.+-.+|.++-..+.+..+.||+|+..|+-++|+++|++++.                         
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~-------------------------  924 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS-------------------------  924 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH-------------------------
Confidence            4455556655555555566777777777777788888888888888888877753                         


Q ss_pred             HHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCC
Q 005790          313 RRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQS  392 (677)
Q Consensus       313 ~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~  392 (677)
                                            ..++..|..|.|+||.|+..+ +-.+.++|++ .|+.+-..|..|.||-..|-+.++.
T Consensus       925 ----------------------elld~~de~get~lhkaa~~~-~r~vc~~lvd-agasl~ktd~kg~tp~eraqqa~d~  980 (1004)
T KOG0782|consen  925 ----------------------ELLDMADETGETALHKAACQR-NRAVCQLLVD-AGASLRKTDSKGKTPQERAQQAGDP  980 (1004)
T ss_pred             ----------------------HHHHHHhhhhhHHHHHHHHhc-chHHHHHHHh-cchhheecccCCCChHHHHHhcCCc
Confidence                                  114455788999999999888 8999999999 9999999999999999999999998


Q ss_pred             chHHHHHHHHH
Q 005790          393 ASSDILIRHLI  403 (677)
Q Consensus       393 ~~~~~lv~~Ll  403 (677)
                      +    |..+|-
T Consensus       981 d----laayle  987 (1004)
T KOG0782|consen  981 D----LAAYLE  987 (1004)
T ss_pred             h----HHHHHh
Confidence            8    455543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.37  E-value=4e-07  Score=94.99  Aligned_cols=87  Identities=34%  Similarity=0.344  Sum_probs=56.3

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCCH
Q 005790          197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA-SFDIINSTDHQGNTPLHIAAYRGQP  275 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~-~ga~in~~d~~g~tpL~~A~~~g~~  275 (677)
                      ..+++|+..|++..++.+.-.|.|+ ...|.+.+|+||.|+..|+++++++|++ .+.+++.+|.+|+|||.-|...+|.
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~  586 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHK  586 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcH
Confidence            4566666666666666666666666 5566666666666666666666666665 4556666666666666666666666


Q ss_pred             HHHHHHHHh
Q 005790          276 AVVEALILA  284 (677)
Q Consensus       276 ~iv~~LL~~  284 (677)
                      +++++|-+.
T Consensus       587 ~v~k~L~~~  595 (622)
T KOG0506|consen  587 EVVKLLEEA  595 (622)
T ss_pred             HHHHHHHHH
Confidence            666666543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.36  E-value=5.5e-07  Score=60.76  Aligned_cols=32  Identities=44%  Similarity=0.514  Sum_probs=25.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCC
Q 005790          228 QGSTILHAAAGRGQVEVVKDLIASFDIINSTD  259 (677)
Q Consensus       228 ~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d  259 (677)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47788888888888888888888888877765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.34  E-value=6.1e-07  Score=60.54  Aligned_cols=32  Identities=41%  Similarity=0.701  Sum_probs=24.7

Q ss_pred             CCchHHHHHHhCCCcHHHHHHHhhCCCCCccccC
Q 005790          343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRD  376 (677)
Q Consensus       343 ~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d  376 (677)
                      +|.||||+|+..+ +.+++++||+ .|++++.+|
T Consensus         1 dG~TpLh~A~~~~-~~~~v~~Ll~-~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRG-HPDIVKLLLK-HGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTT-CHHHHHHHHH-TTSCTTCBC
T ss_pred             CcccHHHHHHHHH-HHHHHHHHHH-CcCCCCCCC
Confidence            4778888888777 7888888888 788877765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.31  E-value=1.5e-06  Score=92.86  Aligned_cols=89  Identities=25%  Similarity=0.238  Sum_probs=79.9

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCc---cccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 005790          198 AVHAAARGGNLKILKELLENCTDV---LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ  274 (677)
Q Consensus       198 ~Lh~A~~~g~~eivk~LL~~ga~~---~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~  274 (677)
                      -|..|+...++..+-+||.+|...   ....+.+|+|+||+||..|++.+.++|+-+|+|+..+|..|+|+|.||-+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            466788888899999999999743   23456788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 005790          275 PAVVEALILASP  286 (677)
Q Consensus       275 ~~iv~~LL~~g~  286 (677)
                      -+++..|+++|-
T Consensus       707 qec~d~llq~gc  718 (749)
T KOG0705|consen  707 QECIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHHHcCC
Confidence            999999999983

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.30  E-value=2.2e-06  Score=89.88  Aligned_cols=95  Identities=20%  Similarity=0.260  Sum_probs=83.1

Q ss_pred             CCCCCCCH-----HHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHH
Q 005790          138 EGEYGVTD-----IFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILK  212 (677)
Q Consensus       138 ~~~~g~tp-----L~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk  212 (677)
                      +|.+|.+.     -++++++.|+.++.--||..||++|+.....                  |.||||.|++.|+.--++
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpek------------------g~TpLHvAAk~Gq~~Q~E  184 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEK------------------GNTPLHVAAKAGQILQAE  184 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCccc------------------CCchhHHHHhccchhhhh
Confidence            45555543     3556789999999999999999999887654                  469999999999999999


Q ss_pred             HHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 005790          213 ELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS  251 (677)
Q Consensus       213 ~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~  251 (677)
                      +|+-+|+|+ ...|.+|+||+.+|-..||-++.+.|++.
T Consensus       185 lL~vYGAD~-~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  185 LLAVYGADP-GAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             HHhhccCCC-CCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            999999999 88999999999999999999999998874

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.25  E-value=1.2e-06  Score=91.63  Aligned_cols=90  Identities=22%  Similarity=0.182  Sum_probs=80.5

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790          226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS  305 (677)
Q Consensus       226 d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~  305 (677)
                      +..+..++++|+..|++..++.+.-.|.|++..|.+.+|+||+|+..|+.+++++||+....+++.+|.+|+|||.-|..
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            34566789999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             cCchHHHHHh
Q 005790          306 GFQTYAFRRL  315 (677)
Q Consensus       306 ~~~~~~~~~L  315 (677)
                      .++.++++.|
T Consensus       583 F~h~~v~k~L  592 (622)
T KOG0506|consen  583 FKHKEVVKLL  592 (622)
T ss_pred             cCcHHHHHHH
Confidence            5554444444

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.20  E-value=3.4e-06  Score=89.83  Aligned_cols=89  Identities=25%  Similarity=0.343  Sum_probs=75.8

Q ss_pred             hHHHHHHhcCCHHHHHHHH-hcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 005790          197 RAVHAAARGGNLKILKELL-ENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP  275 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~LL-~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~  275 (677)
                      .|+|+++.....+-+..++ ..-+.+.+..|..|.||||+|+.-|+.+.++.|+.+|+++..++..|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            3699999888766555533 333334488999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 005790          276 AVVEALILAS  285 (677)
Q Consensus       276 ~iv~~LL~~g  285 (677)
                      +++..+|.+.
T Consensus       102 q~i~~vlr~~  111 (560)
T KOG0522|consen  102 QIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHh
Confidence            9998888654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.15  E-value=4.7e-06  Score=89.05  Aligned_cols=86  Identities=28%  Similarity=0.284  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchH
Q 005790          316 DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASS  395 (677)
Q Consensus       316 ~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~  395 (677)
                      ...+..+-+|+.++. ....+-...+.+|+|+||+||..+ ++.+.++|+= +|+|+-.+|..|+|+|.||-+.|..+  
T Consensus       634 ~~Dl~t~~lLLAhg~-~~e~~~t~~~~~grt~LHLa~~~g-nVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~sqe--  708 (749)
T KOG0705|consen  634 AEDLQTAILLLAHGS-REEVNETCGEGDGRTALHLAARKG-NVVLAQLLIW-YGVDVMARDAHGRTALFYARQAGSQE--  708 (749)
T ss_pred             HHHHHHHHHHHhccC-chhhhccccCCCCcchhhhhhhhc-chhHHHHHHH-hCccceecccCCchhhhhHhhcccHH--
Confidence            566777778888773 222223344667899999999998 9999999997 99999999999999999999999987  


Q ss_pred             HHHHHHHHHcCCC
Q 005790          396 DILIRHLISAGGI  408 (677)
Q Consensus       396 ~~lv~~Ll~~Gad  408 (677)
                        .+..|+++|.-
T Consensus       709 --c~d~llq~gcp  719 (749)
T KOG0705|consen  709 --CIDVLLQYGCP  719 (749)
T ss_pred             --HHHHHHHcCCC
Confidence              57888888864

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.13  E-value=4.4e-06  Score=88.99  Aligned_cols=66  Identities=27%  Similarity=0.499  Sum_probs=59.7

Q ss_pred             hhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHH
Q 005790          335 DIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHL  402 (677)
Q Consensus       335 ~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~L  402 (677)
                      ..++.+|..|+||||+|+..| +.+.+++||. .|||+..+|+.|++|||.|+..|+..++..+++.+
T Consensus        46 ~~id~~D~~g~TpLhlAV~Lg-~~~~a~~Ll~-a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   46 LVIDRRDPPGRTPLHLAVRLG-HVEAARILLS-AGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             ceeccccCCCCccHHHHHHhc-CHHHHHHHHh-cCCCccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence            347888999999999999999 9999999999 99999999999999999999999998776665553

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.09  E-value=1.2e-05  Score=90.39  Aligned_cols=133  Identities=19%  Similarity=0.108  Sum_probs=92.2

Q ss_pred             ccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHH
Q 005790           71 DEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAA  150 (677)
Q Consensus        71 ~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA  150 (677)
                      ++..+..|+..|+...++-.++.......++|..|.-|.++|+.|+.+.+.|++++|+++.-..        ..+|++| 
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~a-   95 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLA-   95 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHH-
Confidence            4556777888887777766666444466788889999999999999999999999999875311        2456766 


Q ss_pred             HhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCc
Q 005790          151 ARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDV  221 (677)
Q Consensus       151 ~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~  221 (677)
                      +..|..++|++++.+-........         ...........+.|||.+||..++.||++.||++|+.+
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~---------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLER---------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhcc---------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            566899999999886443221111         11111122334468888888888888888888888887

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.91  E-value=2e-05  Score=88.70  Aligned_cols=132  Identities=17%  Similarity=0.093  Sum_probs=86.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhh
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKNPL---LVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIE  184 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g~~---~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~  184 (677)
                      +.--...|+..|+.-.|+..++....   .++..|.-|.++|+.| +.+.+.|++++|+++....      |.-+..-+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~ia-i~nenle~~eLLl~~~~~~------gdALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIA-IDNENLELQELLLDTSSEE------GDALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecc-cccccHHHHHHHhcCcccc------chHHHHHHH
Confidence            44457889999999999999988654   4677889999999998 6999999999999987543      111111111


Q ss_pred             cchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCC
Q 005790          185 EIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS  257 (677)
Q Consensus       185 ~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~  257 (677)
                      ..         .-.+-.+... +.+....+-..+ +.+...-..+.|||++||..+++||++.||.+|+.+-.
T Consensus        98 ~~---------~v~~VE~ll~-~~~~~~~~~~~~-d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   98 VG---------SVPLVELLLV-HFVDAPYLERSG-DANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HH---------HHHHHHHHHh-cccccchhcccc-ccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            10         0111111111 001111111122 22234456778999999999999999999999997543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.91  E-value=0.0001  Score=75.35  Aligned_cols=67  Identities=25%  Similarity=0.296  Sum_probs=48.8

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 005790          198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP  265 (677)
Q Consensus       198 ~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp  265 (677)
                      -|..||+.|+++.|+.|++.|.++ |..|.....||.+|+..||.++|++|+++||-...-..+|.-.
T Consensus        39 elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC  105 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence            477777777777777777777777 6677777777777777777777777777777665544555444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.84  E-value=4.5e-05  Score=71.09  Aligned_cols=66  Identities=27%  Similarity=0.287  Sum_probs=61.6

Q ss_pred             CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 005790          219 TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASF-DIINSTDHQGNTPLHIAAYRGQPAVVEALILAS  285 (677)
Q Consensus       219 a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~g-a~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g  285 (677)
                      .++ +.+|..|||+|+.|+..|+.+.+.+|+.+| +.+...|..+.+++.+|-+.|..+++..|.+..
T Consensus         3 ~~i-n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    3 GNI-NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCc-cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            355 889999999999999999999999999999 899999999999999999999999999998864

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.78  E-value=4.7e-05  Score=77.83  Aligned_cols=70  Identities=24%  Similarity=0.302  Sum_probs=60.5

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchh
Q 005790          230 STILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFL  300 (677)
Q Consensus       230 ~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpL  300 (677)
                      .--|..||+.|+.+.|++|++.|.++|.+|....+||.+|+..||.++|++||++| +....-.-+|.-.+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenG-AiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENG-AICSRDTFDGDRCH  106 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcC-CcccccccCcchhh
Confidence            44689999999999999999999999999999999999999999999999999999 44544444555443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.67  E-value=4e-05  Score=88.79  Aligned_cols=78  Identities=27%  Similarity=0.383  Sum_probs=40.1

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhc
Q 005790          228 QGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSG  306 (677)
Q Consensus       228 ~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~  306 (677)
                      .|.|+||.|+..+..-++++|+++|+++|..|..|++|||.+...|+...+..|++++ ++.+..+.+|.+||++|...
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~-a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRG-ADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccc-ccccccCccCcchhhHHhhh
Confidence            3445555555555555555555555555555555555555555555555555555544 34445555555555555443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.59  E-value=0.00022  Score=66.63  Aligned_cols=64  Identities=27%  Similarity=0.255  Sum_probs=57.4

Q ss_pred             hhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCC-CCccccCCCCCcHHHHHhhCCCCchHHHHHHH
Q 005790          336 IINAKNNDGRTALHMAITGNVHLELVQLLMSAPS-INVNVRDNDGMTTLDLLKQRPQSASSDILIRH  401 (677)
Q Consensus       336 ~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~G-adin~~d~~G~TpL~~A~~~~~~~~~~~lv~~  401 (677)
                      +||.+|..|+|||++|+..| ..+.|.+|+. .| ++|.+.|..|.+++.+|-+.|..+.+..|.+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg-~~eavsyllg-rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEG-SNEAVSYLLG-RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhc-chhHHHHHhc-cCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            48999999999999999988 9999999999 89 99999999999999999999998854444444

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.58  E-value=7.2e-05  Score=86.74  Aligned_cols=79  Identities=20%  Similarity=0.246  Sum_probs=74.1

Q ss_pred             CCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHH
Q 005790          342 NDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIA  421 (677)
Q Consensus       342 ~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~  421 (677)
                      ..|.|+||.|+..+ ..-++++||+ .|+++|..|..|+||||.+...|+..    ...+|++.||+.+..+..|+++|.
T Consensus       654 ~~~~s~lh~a~~~~-~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~----~~~~ll~~~a~~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTG-DSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTS----IACLLLKRGADPNAFDPDGKLPLD  727 (785)
T ss_pred             hcccchhhhhhccc-hHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccc----hhhhhccccccccccCccCcchhh
Confidence            46899999999988 9999999999 99999999999999999999999988    577788899999999999999999


Q ss_pred             HHHHH
Q 005790          422 SHIKM  426 (677)
Q Consensus       422 ~al~~  426 (677)
                      .+...
T Consensus       728 ~a~~~  732 (785)
T KOG0521|consen  728 IAMEA  732 (785)
T ss_pred             HHhhh
Confidence            99886

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.22  E-value=0.00034  Score=80.77  Aligned_cols=91  Identities=25%  Similarity=0.220  Sum_probs=72.2

Q ss_pred             cchHHHHHHhcCCHHHHHHHHhc-CCCccccCCCCCCcHHHHHHHhCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHHc
Q 005790          195 MNRAVHAAARGGNLKILKELLEN-CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI-ASFDIINSTDHQGNTPLHIAAYR  272 (677)
Q Consensus       195 ~~t~Lh~A~~~g~~eivk~LL~~-ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll-~~ga~in~~d~~g~tpL~~A~~~  272 (677)
                      +++.+|+++..+..-+++.+++. |... ...|..|.-.+|+ |..++++.+-+|+ -.|..++.+|..|+||||+|+.+
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~  651 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFR  651 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhc
Confidence            57899999999999999999986 5444 5567777778888 4455566555554 47888999999999999999999


Q ss_pred             CCHHHHHHHHHhCCC
Q 005790          273 GQPAVVEALILASPS  287 (677)
Q Consensus       273 g~~~iv~~LL~~g~~  287 (677)
                      |+..++..|++.|+.
T Consensus       652 G~e~l~a~l~~lga~  666 (975)
T KOG0520|consen  652 GREKLVASLIELGAD  666 (975)
T ss_pred             CHHHHHHHHHHhccc
Confidence            999999999987743

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.10  E-value=0.00049  Score=79.54  Aligned_cols=124  Identities=17%  Similarity=-0.033  Sum_probs=100.1

Q ss_pred             ccCcHHHHHHHcCCHHHHHHHHHh-cCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchh
Q 005790           25 WYASPIDWAAANGHYDLVRELLRI-DGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLI  103 (677)
Q Consensus        25 ~g~TpL~~Aa~~G~~diV~~LL~~-ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~  103 (677)
                      -|.|-||+|+..|..-+++.+++- |-..            .+...++...+|.++..+...++.++.-    .|..+++
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~------------~eld~d~qgV~hfca~lg~ewA~ll~~~----~~~ai~i  636 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGD------------LELDRDGQGVIHFCAALGYEWAFLPISA----DGVAIDI  636 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCc------------hhhcccCCChhhHhhhcCCceeEEEEee----ccccccc
Confidence            355999999999999999999985 3322            2455667778888888888888877776    8999999


Q ss_pred             hcCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc-----CCCCCCCHHHHHHHhcCCHHHHHHHHhc
Q 005790          104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFG-----EGEYGVTDIFYAAARSKNCDVFRLIYDF  165 (677)
Q Consensus       104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~-----~~~~g~tpL~~AA~~~g~~evv~lLl~~  165 (677)
                      +|..|+||||||+..|+..++..|++.|+.....     ....|.|+...|. .+|+..+.-+|-+.
T Consensus       637 ~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~-s~g~~gia~~lse~  702 (975)
T KOG0520|consen  637 RDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLAR-ANGHKGIAGYLSEK  702 (975)
T ss_pred             ccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhh-cccccchHHHHhhh
Confidence            9999999999999999999999999887644332     3345888887774 66888888888775

>smart00248 ANK ankyrin repeats

Probab=96.51  E-value=0.0034  Score=39.29  Aligned_cols=28  Identities=29%  Similarity=0.411  Sum_probs=25.3

Q ss_pred             cCcHHHHHHHcCCHHHHHHHHHhcCCch
Q 005790           26 YASPIDWAAANGHYDLVRELLRIDGNHL   53 (677)
Q Consensus        26 g~TpL~~Aa~~G~~diV~~LL~~ga~~n   53 (677)
                      |.||||+|+..|+.+++++|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5699999999999999999999988753

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.91  E-value=0.013  Score=36.40  Aligned_cols=26  Identities=46%  Similarity=0.455  Sum_probs=13.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCC
Q 005790          229 GSTILHAAAGRGQVEVVKDLIASFDI  254 (677)
Q Consensus       229 g~TpL~~A~~~g~~eivk~Ll~~ga~  254 (677)
                      |.||||+|+..++.+++++|+++|.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            34555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.13  E-value=0.036  Score=59.32  Aligned_cols=73  Identities=27%  Similarity=0.255  Sum_probs=57.6

Q ss_pred             CHHHHHHHHhcCCCcc-----ccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 005790          207 NLKILKELLENCTDVL-----TYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL  281 (677)
Q Consensus       207 ~~eivk~LL~~ga~~~-----~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~L  281 (677)
                      -...|++|.+++.+.+     ...+..-.|+||+|+..|..++|.+||+.|+|+...|..|.||..++.   +.++-..+
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F  479 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIF  479 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHH
Confidence            3678888888887662     122344569999999999999999999999999999999999999876   44554444


Q ss_pred             H
Q 005790          282 I  282 (677)
Q Consensus       282 L  282 (677)
                      +
T Consensus       480 ~  480 (591)
T KOG2505|consen  480 I  480 (591)
T ss_pred             H
Confidence            4

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.91  E-value=0.27  Score=46.44  Aligned_cols=144  Identities=17%  Similarity=0.151  Sum_probs=92.0

Q ss_pred             ccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHH
Q 005790           69 WDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFY  148 (677)
Q Consensus        69 ~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~  148 (677)
                      .+-.-.+..|++.+-..+.+.+-+.....       -....+.+-.||+..+.|+|+|+-+.-.       .+..+.++-
T Consensus        44 c~~~CLl~HAVk~nmL~ILqkyke~L~~~-------~~~~q~LFElAC~~qkydiV~WI~qnL~-------i~~~~~iFd  109 (192)
T PF03158_consen   44 CDMWCLLYHAVKYNMLSILQKYKEDLENE-------RYLNQELFELACEEQKYDIVKWIGQNLH-------IYNPEDIFD  109 (192)
T ss_pred             CCHHHHHHHHHHcCcHHHHHHHHHHhhcc-------hhHHHHHHHHHHHHccccHHHHHhhccC-------CCCchhhhh
Confidence            34455678888888888887776633321       1234577889999999999999954322       222344555


Q ss_pred             HHHhcCCHHHH----HHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCcccc
Q 005790          149 AAARSKNCDVF----RLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTY  224 (677)
Q Consensus       149 AA~~~g~~evv----~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~  224 (677)
                      .|...++.++.    .+++++...-     ...+            ....-..-|..|+..|-+..+...+++|.++.  
T Consensus       110 IA~~~kDlsLyslGY~l~~~~~~~~-----~~~d------------~~~ll~~hl~~a~~kgll~F~letlkygg~~~--  170 (192)
T PF03158_consen  110 IAFAKKDLSLYSLGYKLLFNRMMSE-----HNED------------PTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD--  170 (192)
T ss_pred             hhhhccchhHHHHHHHHHHhhcccc-----cccC------------HHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc--
Confidence            55666666652    2233332111     0000            01111245788999999999988999988872  


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHh
Q 005790          225 RDKQGSTILHAAAGRGQVEVVKDLIA  250 (677)
Q Consensus       225 ~d~~g~TpL~~A~~~g~~eivk~Ll~  250 (677)
                           .++|..|+..++..++.+++.
T Consensus       171 -----~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  171 -----IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             -----HHHHHHHHHhhHHHHHHHhhc
Confidence                 278899999999988888764

These proteins may be involved in promoting survival of infected macrophages [].

>PLN03218 maturation of RBCL 1; Provisional

Probab=93.79  E-value=1.4  Score=54.18  Aligned_cols=189  Identities=11%  Similarity=0.057  Sum_probs=88.6

Q ss_pred             hHHHHHHhcCCHHHHHH----HHhcCCCccccCCCCC-CcHHHHHHHhCCHHHH----HHHHhcCCCCCCCCCCCCcHHH
Q 005790          197 RAVHAAARGGNLKILKE----LLENCTDVLTYRDKQG-STILHAAAGRGQVEVV----KDLIASFDIINSTDHQGNTPLH  267 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~----LL~~ga~~~~~~d~~g-~TpL~~A~~~g~~eiv----k~Ll~~ga~in~~d~~g~tpL~  267 (677)
                      +.+...++.|.++-+..    +.+.|...    +..- .+.+...++.|+.+-+    +.+.+.|..++...  -.+.+.
T Consensus       584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p----~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T--ynsLI~  657 (1060)
T PLN03218        584 ALMKACANAGQVDRAKEVYQMIHEYNIKG----TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF--FSALVD  657 (1060)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHH
Confidence            45666667777554443    34444322    1112 2344555667775443    34445666555321  124455


Q ss_pred             HHHHcCCHHHHHHHHH----hCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCC
Q 005790          268 IAAYRGQPAVVEALIL----ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNND  343 (677)
Q Consensus       268 ~A~~~g~~~iv~~LL~----~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~  343 (677)
                      ..+..|+.+-+..+++    .| ..++.  ....+.+...+..+..+.      -.++.+.+.+.+.        .+|..
T Consensus       658 a~~k~G~~eeA~~l~~eM~k~G-~~pd~--~tynsLI~ay~k~G~~ee------A~~lf~eM~~~g~--------~Pdvv  720 (1060)
T PLN03218        658 VAGHAGDLDKAFEILQDARKQG-IKLGT--VSYSSLMGACSNAKNWKK------ALELYEDIKSIKL--------RPTVS  720 (1060)
T ss_pred             HHHhCCCHHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHhCCCHHH------HHHHHHHHHHcCC--------CCCHH
Confidence            5667777665444443    22 11110  011122333333333322      2223333322221        11222


Q ss_pred             CchHHHHHHhCCCcHH----HHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCC
Q 005790          344 GRTALHMAITGNVHLE----LVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGC  411 (677)
Q Consensus       344 G~TpLh~A~~~~~~~e----iv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~  411 (677)
                      -++.|..+....+..+    +++.+.+ .|..+|....  .+-|...+..|..+....+++.+++.|..+|.
T Consensus       721 tyN~LI~gy~k~G~~eeAlelf~eM~~-~Gi~Pd~~Ty--~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~  789 (1060)
T PLN03218        721 TMNALITALCEGNQLPKALEVLSEMKR-LGLCPNTITY--SILLVASERKDDADVGLDLLSQAKEDGIKPNL  789 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence            2444544443232543    3333334 5666664322  24455667778888788888888888887764

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.69  E-value=0.087  Score=56.53  Aligned_cols=41  Identities=22%  Similarity=0.099  Sum_probs=29.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHH
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYA  149 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~A  149 (677)
                      -.|+||+|+..|.-++|.+||+.+ .+....|..|.||...+
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls  470 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLS  470 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCccccc
Confidence            456777777777777777777777 35566677777776665

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.66  E-value=0.61  Score=44.08  Aligned_cols=138  Identities=16%  Similarity=0.151  Sum_probs=90.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhh
Q 005790          110 WLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSV  189 (677)
Q Consensus       110 t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~  189 (677)
                      ..|..|+..+.+.+++.+-+.....     ..-..-|+.-|++..+.|+|+++-+.-.   ..+                
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~qnL~---i~~----------------  103 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQNLH---IYN----------------  103 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhhccC---CCC----------------
Confidence            4688999999999999887664311     1112346666778899999999944211   110                


Q ss_pred             hhhhccchHHHHHHhcCCHHHHH----HHHhcCCCccccCCC--CCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC
Q 005790          190 YKWEMMNRAVHAAARGGNLKILK----ELLENCTDVLTYRDK--QGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN  263 (677)
Q Consensus       190 ~~~~~~~t~Lh~A~~~g~~eivk----~LL~~ga~~~~~~d~--~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~  263 (677)
                           -.+.+-.|....++++..    +++++...- ...|.  --..-|..|+..|-+..+...+++|.+++.      
T Consensus       104 -----~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------  171 (192)
T PF03158_consen  104 -----PEDIFDIAFAKKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------  171 (192)
T ss_pred             -----chhhhhhhhhccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------
Confidence                 024667788887766522    222221111 00000  001236789999999999999999988764      


Q ss_pred             cHHHHHHHcCCHHHHHHHHH
Q 005790          264 TPLHIAAYRGQPAVVEALIL  283 (677)
Q Consensus       264 tpL~~A~~~g~~~iv~~LL~  283 (677)
                      ++|..|+..++..++.+++.
T Consensus       172 ~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  172 IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHhhHHHHHHHhhc
Confidence            78999999999999988864

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.24  E-value=0.84  Score=44.45  Aligned_cols=123  Identities=17%  Similarity=0.305  Sum_probs=75.0

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 005790          198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAV  277 (677)
Q Consensus       198 ~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~i  277 (677)
                      .|--|+..-+++-+.-++....+.        .++|.+|+.++..+++-+|+..-- +...|        +|-....+.=
T Consensus       156 sledAV~AsN~~~i~~~VtdKkdA--------~~Am~~si~~~K~dva~~lls~f~-ft~~d--------v~~~~~~~yd  218 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKDA--------HQAMWLSIGNAKEDVALYLLSKFN-FTKQD--------VASMEKELYD  218 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHHH--------HHHHHHHhcccHHHHHHHHHhhcc-eecch--------hhhcCcchhh
Confidence            466677777777777766644332        367778887777788888876421 11111        2222224445


Q ss_pred             HHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCc
Q 005790          278 VEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVH  357 (677)
Q Consensus       278 v~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~  357 (677)
                      ++++|+...+                              ...++++.++.|.+++..-. .+-..|.|.|--|+..+ +
T Consensus       219 ieY~LS~h~a------------------------------~~kvL~~Fi~~Glv~vN~~F-~~~NSGdtMLDNA~Ky~-~  266 (284)
T PF06128_consen  219 IEYLLSEHSA------------------------------SYKVLEYFINRGLVDVNKKF-QKVNSGDTMLDNAMKYK-N  266 (284)
T ss_pred             HHHHHhhcCC------------------------------cHHHHHHHHhccccccchhh-hccCCcchHHHhHHhcC-c
Confidence            6666654422                              24566677777765532221 12356888888888887 8


Q ss_pred             HHHHHHHhhCCCC
Q 005790          358 LELVQLLMSAPSI  370 (677)
Q Consensus       358 ~eiv~lLL~~~Ga  370 (677)
                      .+++.+||+ +||
T Consensus       267 ~emi~~Llk-~GA  278 (284)
T PF06128_consen  267 SEMIAFLLK-YGA  278 (284)
T ss_pred             HHHHHHHHH-cCc
Confidence            888888888 787

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PLN03218 maturation of RBCL 1; Provisional

Probab=92.24  E-value=5.8  Score=48.80  Aligned_cols=260  Identities=12%  Similarity=0.073  Sum_probs=121.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHH----HHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          110 WLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCD----VFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       110 t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~e----vv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      +.|...+..|+.+.+..+++.-...-...|..-++.|..+.++.|..+    +++.+.+.|..||...            
T Consensus       477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT------------  544 (1060)
T PLN03218        477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV------------  544 (1060)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH------------
Confidence            445556666776655555543211001122333445555556666653    3344444555444221            


Q ss_pred             chhhhhhhccchHHHHHHhcCCHHHHHHHHhc----CCCccccCCC-CCCcHHHHHHHhCCHHHHHHH----HhcCCCCC
Q 005790          186 IPSVYKWEMMNRAVHAAARGGNLKILKELLEN----CTDVLTYRDK-QGSTILHAAAGRGQVEVVKDL----IASFDIIN  256 (677)
Q Consensus       186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~----ga~~~~~~d~-~g~TpL~~A~~~g~~eivk~L----l~~ga~in  256 (677)
                               .++.|...++.|..+-+..+++.    +..+  ..|. .-.+.+...++.|+++-+..+    .+.|..++
T Consensus       545 ---------YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi--~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~  613 (1060)
T PLN03218        545 ---------FNALISACGQSGAVDRAFDVLAEMKAETHPI--DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT  613 (1060)
T ss_pred             ---------HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence                     13566666777776655444432    1111  1121 122445566677876644444    44554433


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCC-CchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhh
Q 005790          257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSG-ETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMED  335 (677)
Q Consensus       257 ~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g-~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~  335 (677)
                      ..  ...+.+...++.|+.+-+..+++.-...--..|..- .+.+...+..+..      ..-.++++.+.+.+. .   
T Consensus       614 ~~--tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~------eeA~~l~~eM~k~G~-~---  681 (1060)
T PLN03218        614 PE--VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL------DKAFEILQDARKQGI-K---  681 (1060)
T ss_pred             hH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH------HHHHHHHHHHHHcCC-C---
Confidence            21  123455566778887655555432100000011111 1223333333332      222334444444331 1   


Q ss_pred             hhhccCCCCchHHHHH-HhCCCcHHHHHHHhhC---CCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCC
Q 005790          336 IINAKNNDGRTALHMA-ITGNVHLELVQLLMSA---PSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGC  411 (677)
Q Consensus       336 ~in~~d~~G~TpLh~A-~~~~~~~eiv~lLL~~---~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~  411 (677)
                          .|..-.+.|..+ +..+ ..+-+..+++.   .|..++...  -.+-+...+..|+.+-+..+++.+.+.|..+|.
T Consensus       682 ----pd~~tynsLI~ay~k~G-~~eeA~~lf~eM~~~g~~Pdvvt--yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~  754 (1060)
T PLN03218        682 ----LGTVSYSSLMGACSNAK-NWKKALELYEDIKSIKLRPTVST--MNALITALCEGNQLPKALEVLSEMKRLGLCPNT  754 (1060)
T ss_pred             ----CCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence                122223444444 4444 55544333321   455555432  123445557888888888888888888988765

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.33  E-value=1.2  Score=43.53  Aligned_cols=119  Identities=15%  Similarity=0.140  Sum_probs=68.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhh
Q 005790          111 LLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVY  190 (677)
Q Consensus       111 ~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~  190 (677)
                      .|--|+..-+++.+.-++....        .-.+++.++ +.++..+++-+|+.+=   ++....-..+       +.  
T Consensus       156 sledAV~AsN~~~i~~~VtdKk--------dA~~Am~~s-i~~~K~dva~~lls~f---~ft~~dv~~~-------~~--  214 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKK--------DAHQAMWLS-IGNAKEDVALYLLSKF---NFTKQDVASM-------EK--  214 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchH--------HHHHHHHHH-hcccHHHHHHHHHhhc---ceecchhhhc-------Cc--
Confidence            4677888888888877775432        123555555 5667788888888731   1111100000       00  


Q ss_pred             hhhccchHHHHHH--hcCCHHHHHHHHhcCC-Cccc--cCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 005790          191 KWEMMNRAVHAAA--RGGNLKILKELLENCT-DVLT--YRDKQGSTILHAAAGRGQVEVVKDLIASFDI  254 (677)
Q Consensus       191 ~~~~~~t~Lh~A~--~~g~~eivk~LL~~ga-~~~~--~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~  254 (677)
                          +.--+.++.  ...+..+++++|++|- +++.  .+-..|.|-|--|++.++.+++.+||++||.
T Consensus       215 ----~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  215 ----ELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             ----chhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence                000122222  2234677777777774 3321  2345677778888888888888888887774

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PLN03077 Protein ECB2; Provisional

Probab=90.27  E-value=37  Score=41.17  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=30.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHH----HHHHHHhcCCCcc
Q 005790          110 WLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCD----VFRLIYDFAVSPR  170 (677)
Q Consensus       110 t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~e----vv~lLl~~Gad~~  170 (677)
                      +.+...+..|+++-+..+++.-.    ..|..-++.+..+.++.|..+    +++.+.+.|..|+
T Consensus       328 ~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd  388 (857)
T PLN03077        328 SLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD  388 (857)
T ss_pred             HHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence            34555556666666666665432    133444566666666666543    3333344555554

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.96  E-value=1.1  Score=36.38  Aligned_cols=46  Identities=13%  Similarity=0.383  Sum_probs=31.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHh
Q 005790           28 SPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLE   92 (677)
Q Consensus        28 TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~   92 (677)
                      .-|..|+..|+.||++.+++.+ .+                  ....+..|+..++.+++++|++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~------------------~~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KP------------------DNDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-cc------------------HHHHHHHHHHHhhHHHHHHHHH
Confidence            4588999999999999999765 22                  1233566666666666666665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=86.30  E-value=41  Score=39.65  Aligned_cols=90  Identities=14%  Similarity=0.082  Sum_probs=54.6

Q ss_pred             HHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcC
Q 005790           75 FDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSK  154 (677)
Q Consensus        75 l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g  154 (677)
                      +...++.+......-+.......|..++..  .....+..-+..|+++-+..+++.-+.    +|..-++.|..+.++.|
T Consensus       130 l~a~~~~~~~~~a~~l~~~m~~~g~~~~~~--~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g  203 (697)
T PLN03081        130 VEACIALKSIRCVKAVYWHVESSGFEPDQY--MMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAG  203 (697)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCCcchH--HHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCc
Confidence            444445555444444444444466665432  234567777888999999998877542    45556777887777888


Q ss_pred             CHH----HHHHHHhcCCCcc
Q 005790          155 NCD----VFRLIYDFAVSPR  170 (677)
Q Consensus       155 ~~e----vv~lLl~~Gad~~  170 (677)
                      ..+    +++-+++.|..|+
T Consensus       204 ~~~~A~~lf~~M~~~g~~p~  223 (697)
T PLN03081        204 NYREAFALFREMWEDGSDAE  223 (697)
T ss_pred             CHHHHHHHHHHHHHhCCCCC
Confidence            754    4444455566554

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.22  E-value=1.9  Score=34.95  Aligned_cols=48  Identities=23%  Similarity=0.278  Sum_probs=37.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS  251 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~  251 (677)
                      ...+..|+.+|+.||++.+++.+. + +      ...|..|+..-+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~-~-~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK-P-D------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc-c-H------HHHHHHHHHHhhHHHHHHHHHh
Confidence            356788888999999988887652 2 1      3568888888888888888885

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=83.61  E-value=64  Score=38.04  Aligned_cols=310  Identities=12%  Similarity=0.040  Sum_probs=160.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHH----HhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCch
Q 005790           27 ASPIDWAAANGHYDLVRELL----RIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSL  102 (677)
Q Consensus        27 ~TpL~~Aa~~G~~diV~~LL----~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~  102 (677)
                      .+.|...+..|..+..+.+.    +.|...+.              ......+...++.+..+-..-+++....      
T Consensus       228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~--------------~~~n~Li~~y~k~g~~~~A~~vf~~m~~------  287 (697)
T PLN03081        228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDT--------------FVSCALIDMYSKCGDIEDARCVFDGMPE------  287 (697)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccc--------------eeHHHHHHHHHHCCCHHHHHHHHHhCCC------
Confidence            35666667778877777663    44544321              2233445555666665444444432111      


Q ss_pred             hhcCCC-ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHH----HHHHHHhcCCCcccccccCC
Q 005790          103 IRAGYG-GWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCD----VFRLIYDFAVSPRFLTAKGG  177 (677)
Q Consensus       103 ~~d~~G-~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~e----vv~lLl~~Gad~~~~~~~~~  177 (677)
                       +|..- .+.+..-+..|+.+-+..+++.-...-...|..-++.+..+++..|..+    +.+.+++.|..++....   
T Consensus       288 -~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~---  363 (697)
T PLN03081        288 -KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN---  363 (697)
T ss_pred             -CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh---
Confidence             12222 2455566677877665555533100011134445666777777777764    55666777877664332   


Q ss_pred             cchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHH-HHHhCCH----HHHHHHHhcC
Q 005790          178 ELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHA-AAGRGQV----EVVKDLIASF  252 (677)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~-A~~~g~~----eivk~Ll~~g  252 (677)
                                        ++.+..-+..|.++-...+++.-..    +|..-++.|.. .+..|+.    ++++.+.+.|
T Consensus       364 ------------------~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g  421 (697)
T PLN03081        364 ------------------TALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG  421 (697)
T ss_pred             ------------------HHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                              3566777788998888888775432    33344555544 4566764    4455555677


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCC--chhhhhh------hcCchHHHHHhhHHHHHHHH
Q 005790          253 DIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGE--TFLHSAV------SGFQTYAFRRLDRQVKLMKQ  324 (677)
Q Consensus       253 a~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~--tpLh~A~------~~~~~~~~~~L~~~~eiv~~  324 (677)
                      ..+|...  -.+.|...+..|..+-...+++.-..      ..|.  +..|+++      +.|..         .+..++
T Consensus       422 ~~Pd~~T--~~~ll~a~~~~g~~~~a~~~f~~m~~------~~g~~p~~~~y~~li~~l~r~G~~---------~eA~~~  484 (697)
T PLN03081        422 VAPNHVT--FLAVLSACRYSGLSEQGWEIFQSMSE------NHRIKPRAMHYACMIELLGREGLL---------DEAYAM  484 (697)
T ss_pred             CCCCHHH--HHHHHHHHhcCCcHHHHHHHHHHHHH------hcCCCCCccchHhHHHHHHhcCCH---------HHHHHH
Confidence            7766543  12344445566766655544432100      0111  1123332      22221         122222


Q ss_pred             HHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCC-cHHHHHhhCCCCchHHHHHHHHH
Q 005790          325 LASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGM-TTLDLLKQRPQSASSDILIRHLI  403 (677)
Q Consensus       325 Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~-TpL~~A~~~~~~~~~~~lv~~Ll  403 (677)
                      +-+.. .       ..+..-++.|.-|+...++.+..+...+ .-..+...+.... .-+...+..|+.+-+..+++.+.
T Consensus       485 ~~~~~-~-------~p~~~~~~~Ll~a~~~~g~~~~a~~~~~-~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~  555 (697)
T PLN03081        485 IRRAP-F-------KPTVNMWAALLTACRIHKNLELGRLAAE-KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK  555 (697)
T ss_pred             HHHCC-C-------CCCHHHHHHHHHHHHHcCCcHHHHHHHH-HHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            21111 1       1122224566666654448887766655 2222222122222 34445678888888888899998


Q ss_pred             HcCCC
Q 005790          404 SAGGI  408 (677)
Q Consensus       404 ~~Gad  408 (677)
                      +.|..
T Consensus       556 ~~g~~  560 (697)
T PLN03081        556 RKGLS  560 (697)
T ss_pred             HcCCc
Confidence            88874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	677
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		7e-14
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-13
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-04
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-04
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		8e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		9e-08
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		9e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-07
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-10
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-10
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-10
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-10
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-10
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-08
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-06
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-09
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-09
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-08
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-09
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		9e-09
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		9e-09
1uoh_A	226	Human Gankyrin Length = 226		3e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-08
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		4e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		6e-08
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		7e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		9e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		4e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		9e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		6e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		7e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		9e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		9e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-04
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-06
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		5e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		6e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		6e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		6e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		7e-06
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		8e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		7e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		8e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		8e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		9e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		1e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		2e-04
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-04
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		3e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		3e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-04
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H AAR G+L+++K LLE   DV   +DK G T LH AA  G +EVVK L+ +   +N+ 
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
           D  G TPLH+AA  G   VV+ L+L + + ++ K+ +G T LH A
Sbjct: 65  DKNGRTPLHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLA 108

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 17/139 (12%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G T LH AA  G +EVVK L+ +   +N+ D  G TPLH+AA  G   VV+ L+L + + 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-LLLEAGAD 60
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
           ++ K+ +G T LH A               VKL+ +  +         +NAK+ +GRT L
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEV-------VKLLLEAGAD--------VNAKDKNGRTPL 105
Query: 349 HMAITGNVHLELVQLLMSA 367
           H+A   N HLE+V+LL+ A
Sbjct: 106 HLA-ARNGHLEVVKLLLEA 123

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 82/187 (43%), Gaps = 52/187 (27%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
           AA  GN   +K+L+EN  DV    D  G T LH AA  G  EVVK LI+    +N+ D  
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKL 321
           G TPLH AA  G   VV+ LI                                       
Sbjct: 70  GRTPLHHAAENGHKEVVKLLISKGAD---------------------------------- 95
Query: 322 MKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMT 381
                          +NAK++DGRT LH A   N H E+V+LL+S  + +VN  D+DG T
Sbjct: 96  ---------------VNAKDSDGRTPLHHA-AENGHKEVVKLLISKGA-DVNTSDSDGRT 138
Query: 382 TLDLLKQ 388
            LDL ++
Sbjct: 139 PLDLARE 145

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 81/187 (43%), Gaps = 52/187 (27%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
           AA  GN   +K+L+EN  DV    D  G T LH AA  G  E+VK LI+    +N+ D  
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKL 321
           G TPLH AA  G   +V+ LI                                       
Sbjct: 70  GRTPLHYAAKEGHKEIVKLLISKGAD---------------------------------- 95
Query: 322 MKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMT 381
                          +NAK++DGRT LH A     H E+V+LL+S  + +VN  D+DG T
Sbjct: 96  ---------------VNAKDSDGRTPLHYAAKEG-HKEIVKLLISKGA-DVNTSDSDGRT 138
Query: 382 TLDLLKQ 388
            LDL ++
Sbjct: 139 PLDLARE 145

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 18/154 (11%)
Query: 236 AAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTS 295
           AA  G  + VKDL+ +   +N++D  G TPLH+AA  G   VV+ L+L+  +  + K++ 
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSD 69
Query: 296 GETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGN 355
           G+T LH A         + L      + Q A           NAK++DG+T LH+A   N
Sbjct: 70  GKTPLHLAAENGHKEVVKLL------LSQGAD---------PNAKDSDGKTPLHLAAE-N 113
Query: 356 VHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQR 389
            H E+V+LL+S    + N  D+DG T LDL ++ 
Sbjct: 114 GHKEVVKLLLSQ-GADPNTSDSDGRTPLDLAREH 146

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 84/154 (54%), Gaps = 20/154 (12%)
Query: 236 AAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTS 295
           AA  G  + VKDL+ +    N++D  G TPLH AA  G   +V+ L+L+  +  + K++ 
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVK-LLLSKGADPNAKDSD 69
Query: 296 GETFLH-SAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITG 354
           G T LH +A +G +          VKL+  L+ G         NAK++DGRT LH A   
Sbjct: 70  GRTPLHYAAENGHKEI--------VKLL--LSKGAD------PNAKDSDGRTPLHYAAE- 112
Query: 355 NVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQ 388
           N H E+V+LL+S    + N  D+DG T LDL ++
Sbjct: 113 NGHKEIVKLLLSK-GADPNTSDSDGRTPLDLARE 145

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H AAR G+L+++K LLE   DV   +DK G T LH AA  G +EVVK L+ +   +N+ 
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILA 284
           D  G TPLH+AA  G   VV+ L+ A
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 58/139 (41%), Gaps = 50/139 (35%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G T LH AA  G +EVVK L+ +   +N+ D  G TPLH+AA  G   VV+ L+ A    
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
                                                           +NAK+ +GRT L
Sbjct: 61  ------------------------------------------------VNAKDKNGRTPL 72
Query: 349 HMAITGNVHLELVQLLMSA 367
           H+A   N HLE+V+LL+ A
Sbjct: 73  HLA-ARNGHLEVVKLLLEA 90

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
           +NAK+ +GRT LH+A   N HLE+V+LL+ A + +VN +D +G T L L
Sbjct: 28  VNAKDKNGRTPLHLA-ARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHL 74

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 112/269 (41%), Gaps = 52/269 (19%)
Query: 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRA------------VHAAARGGNLKILKELL 215
           +P  + A+ G  E        V K+ + N+A            +H AAR G+  ++K LL
Sbjct: 49  TPLHMAARAGHTE--------VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL 100
Query: 216 ENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP 275
           EN  +        G T LH AA  G VE V  L+           +G TPLH+AA  G+ 
Sbjct: 101 ENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 159
Query: 276 AVVEALILASPSMISVKNTSGETFLHSAV-----------------------SGFQTYAF 312
            V E L+L   +  +    +G T LH AV                       +G+     
Sbjct: 160 RVAE-LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218
Query: 313 RRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINV 372
                QV++ + L            NA++  G T LH+A     H E+V LL+S  + N 
Sbjct: 219 AAKQNQVEVARSL-----LQYGGSANAESVQGVTPLHLAAQEG-HAEMVALLLSKQA-NG 271
Query: 373 NVRDNDGMTTLDLLKQRPQSASSDILIRH 401
           N+ +  G+T L L+ Q      +D+LI+H
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKH 300

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H AA  G+L+I++ LL+N  DV   +D  G T LH AA RG +E+V+ L+ +   +N++
Sbjct: 51  LHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
           D  G TPLH+AA RG   +VE L L + + ++ ++  G+T
Sbjct: 110 DSHGFTPLHLAAKRGHLEIVEVL-LKNGADVNAQDKFGKT 148

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV   RD  G T LH AA  G +E+V+ L+ +   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N+ D  G TPLH+AA RG   +VE L L + + ++  ++ G T LH A           
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVL-LKNGADVNASDSHGFTPLHLAAKR------GH 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
           L+    L+K  A          +NA++  G+TA  ++I  GN  L E++Q L
Sbjct: 126 LEIVEVLLKNGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 52/173 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L AA   GQ + V+ L+A+   +N+ D  G TPLH+AA+ G   +VE L+      
Sbjct: 15  GKKLLEAARA-GQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLL------ 67
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
              KN +                                         +NAK++ G T L
Sbjct: 68  ---KNGAD----------------------------------------VNAKDSLGVTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
           H+A     HLE+V++L+   + +VN  D+ G T L L  +R      ++L+++
Sbjct: 85  HLAARRG-HLEIVEVLLKNGA-DVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV   +DK G T LH AA  G +E+V+ L+ +   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
           +N+ D  G TPLH+AA  G   +VE L+ A    ++ K+  G T LH A
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLA 108

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 56/185 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L AA   GQ + V+ L+A+   +N+ D  G TPLH+AA  G   +VE L+ A    
Sbjct: 3   GKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD- 60
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
                                                           +NAK+ DG T L
Sbjct: 61  ------------------------------------------------VNAKDKDGYTPL 72
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI 408
           H+A     HLE+V++L+ A + +VN +D DG T L L  +       ++L++    AG  
Sbjct: 73  HLAAREG-HLEIVEVLLKAGA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLK----AGAD 126
Query: 409 FGCQD 413
              QD
Sbjct: 127 VNAQD 131

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H AA  G+L+I++ LL+N  DV  Y D  GST LH AA  G +E+V+ L+ +   +N+ 
Sbjct: 51  LHLAAYWGHLEIVEVLLKNGADVNAY-DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAK 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
           D  G TPLH+AA RG   +VE L+
Sbjct: 110 DDNGITPLHLAANRGHLEIVEVLL 133

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    D  G T LH AA  G +E+V+ L+ +   
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADV-NAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N+ D  G+TPLH+AA+ G   +VE L L + + ++ K+ +G T LH A +         
Sbjct: 73  VNAYDTLGSTPLHLAAHFGHLEIVEVL-LKNGADVNAKDDNGITPLHLAANR------GH 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
           L+    L+K  A          +NA++  G+TA  ++I  GN  L E++Q L
Sbjct: 126 LEIVEVLLKYGAD---------VNAQDKFGKTAFDISINNGNEDLAEILQKL 168

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 52/173 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L AA   G+ + V+ L+A+   +N+ D  G TPLH+AAY G   +VE L+      
Sbjct: 15  GKKLLEAARA-GRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLL------ 67
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
              KN +                                         +NA +  G T L
Sbjct: 68  ---KNGAD----------------------------------------VNAYDTLGSTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
           H+A     HLE+V++L+   + +VN +D++G+T L L   R      ++L+++
Sbjct: 85  HLAAHFG-HLEIVEVLLKNGA-DVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H AA+ G+L+I++ LL+   DV  + D  G+T LH AA  G +E+V+ L+     +N+ 
Sbjct: 51  LHLAAKTGHLEIVEVLLKYGADVNAW-DNYGATPLHLAADNGHLEIVEVLLKHGADVNAK 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
           D++G TPLH+AAY G   +VE L+
Sbjct: 110 DYEGFTPLHLAAYDGHLEIVEVLL 133

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    D  G T LH AA  G +E+V+ L+     
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N+ D+ G TPLH+AA  G   +VE L L   + ++ K+  G T LH A           
Sbjct: 73  VNAWDNYGATPLHLAADNGHLEIVEVL-LKHGADVNAKDYEGFTPLHLAA---------- 121
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
            D  +++++ L           +NA++  G+TA  ++I  GN  L E++Q L
Sbjct: 122 YDGHLEIVEVL-----LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 14/115 (12%)
Query: 170 RFLTAKGGEL--EEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDK 227
           R L A G ++   +H+   P           +H AA  G+L+I++ LL+N  DV    D 
Sbjct: 31  RILMANGADVNASDHVGWTP-----------LHLAAYFGHLEIVEVLLKNGADV-NADDS 78
Query: 228 QGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
            G T LH AA RG +EVV+ L+ +   +N+ DH G TPLH+AA  G   +VE L+
Sbjct: 79  LGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLL 133

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    D  G T LH AA  G +E+V+ L+ +   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N+ D  G TPLH+AA RG   VVE L L + + ++  + +G T LH A +         
Sbjct: 73  VNADDSLGVTPLHLAADRGHLEVVEVL-LKNGADVNANDHNGFTPLHLAAN------IGH 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
           L+    L+K  A          +NA++  G+TA  ++I  GN  L E++Q L
Sbjct: 126 LEIVEVLLKHGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 52/173 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L AA   GQ + V+ L+A+   +N++DH G TPLH+AAY G   +VE L+      
Sbjct: 15  GKKLLEAARA-GQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL------ 67
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
              KN +                                         +NA ++ G T L
Sbjct: 68  ---KNGAD----------------------------------------VNADDSLGVTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
           H+A     HLE+V++L+   + +VN  D++G T L L          ++L++H
Sbjct: 85  HLA-ADRGHLEVVEVLLKNGA-DVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV   +DK G T LH AA  G +E+V+ L+ +   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
           +N+ D  G TPLH+AA  G   +VE L+ A    ++ K+  G T LH A
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLA 108

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 56/185 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L AA   GQ + V+ L+A+   +N+ D  G TPLH+AA  G   +VE L+ A    
Sbjct: 3   GKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD- 60
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
                                                           +NAK+ DG T L
Sbjct: 61  ------------------------------------------------VNAKDKDGYTPL 72
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI 408
           H+A     HLE+V++L+ A + +VN +D DG T L L  +       ++L++    AG  
Sbjct: 73  HLAAREG-HLEIVEVLLKAGA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLK----AGAD 126
Query: 409 FGCQD 413
              QD
Sbjct: 127 VNAQD 131

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV   +DK G T LH AA  G +E+V+ L+ +   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
           +N+ D  G TPLH+AA  G   +VE L+ A    ++ K+  G T LH A
Sbjct: 73  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLA 120

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 78/191 (40%), Gaps = 56/191 (29%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L AA   GQ + V+ L+A+   +N+ D  G TPLH+AA  G   +VE L+ A    
Sbjct: 15  GKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD- 72
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
                                                           +NAK+ DG T L
Sbjct: 73  ------------------------------------------------VNAKDKDGYTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI 408
           H+A     HLE+V++L+ A + +VN +D DG T L L  +       ++L++    AG  
Sbjct: 85  HLAAREG-HLEIVEVLLKAGA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLK----AGAD 138
Query: 409 FGCQDYSARRA 419
              QD   + A
Sbjct: 139 VNAQDKFGKTA 149

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    D  G T LH AA  G +E+V+ L+ +   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
           +N+ D  G+TPLH+AA RG   +VE L L   + ++  +T G T LH A
Sbjct: 73  VNALDFSGSTPLHLAAKRGHLEIVEVL-LKYGADVNADDTIGSTPLHLA 120

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 19/157 (12%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L AA   GQ + V+ L+A+   +N+ D QG+TPLH+AA+ G P +VE L L   + 
Sbjct: 15  GKKLLEAARA-GQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVL-LKHGAD 72
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
           ++ ++T G T LH A           L+    L+K  A          +NA++  G T L
Sbjct: 73  VNARDTDGWTPLHLAADN------GHLEIVEVLLKYGAD---------VNAQDAYGLTPL 117
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
           H+A     HLE+V++L+   + +VN +D  G T  D+
Sbjct: 118 HLA-ADRGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI 152

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H     G+L+I++ LL+   DV    DK G T LH AA RG +E+V+ L+     +N+ 
Sbjct: 51  LHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
           D+QG TPLH+AA  G   +VE L+
Sbjct: 110 DYQGYTPLHLAAEDGHLEIVEVLL 133

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    D  G T LH     G +E+++ L+     
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NANDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N++D  G TPLH+AAYRG   +VE L L   + ++  +  G T LH A           
Sbjct: 73  VNASDKSGWTPLHLAAYRGHLEIVEVL-LKYGADVNAMDYQGYTPLHLAAE--------- 122
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
            D  +++++ L           +NA++  G+TA  ++I  GN  L E++Q L
Sbjct: 123 -DGHLEIVEVL-----LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 26/219 (11%)
Query: 201 AAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDH 260
           AA   G+ + +  LLE   D+  Y +  G T LH A     V++VK L+ +   IN  D+
Sbjct: 46  AACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 261 QGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAV--------------SG 306
           +G  PLH AA  G   + E LI +  + +   N+ G+T L  A                G
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 307 FQTYAFRRLDRQVKL---MKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQL 363
               A R+ + ++ L    + L SG I    D+ +AK+  G TALH+A     + E+++L
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHI---NDVRHAKS--GGTALHVA-AAKGYTEVLKL 217
Query: 364 LMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHL 402
           L+ A   +VN++D DG T L       +  +  IL+ +L
Sbjct: 218 LIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H AA  G+L+I++ LL+N  DV    D  G T LH AA  G +E+V+ L+     +N+ 
Sbjct: 51  LHLAASNGHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAY 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
           D+ G+TPLH+AA  G   +VE L+
Sbjct: 110 DNDGHTPLHLAAKYGHLEIVEVLL 133

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 19/170 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    D  G T LH AA  G +E+V+ L+ +   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N++D  G TPLH+AA  G   +VE L L   + ++  +  G T LH A        +  
Sbjct: 73  VNASDLTGITPLHLAAATGHLEIVEVL-LKHGADVNAYDNDGHTPLHLAAK------YGH 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQ 362
           L+    L+K  A          +NA++  G+TA  ++I  GN  L E++Q
Sbjct: 126 LEIVEVLLKHGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 52/173 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L AA   GQ + V+ L+A+   +N+TD+ G TPLH+AA  G   +VE L+      
Sbjct: 15  GKKLLEAARA-GQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLL------ 67
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
              KN +                                         +NA +  G T L
Sbjct: 68  ---KNGAD----------------------------------------VNASDLTGITPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
           H+A     HLE+V++L+   + +VN  DNDG T L L  +       ++L++H
Sbjct: 85  HLA-AATGHLEIVEVLLKHGA-DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    D  G T LH AA +G +E+V+ L+     
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N+ D  G+TPLH+AA  G   +VE L L + + ++  +T G T LH A           
Sbjct: 73  VNAADKMGDTPLHLAALYGHLEIVEVL-LKNGADVNATDTYGFTPLHLAADA------GH 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
           L+    L+K  A          +NA++  G+TA  ++I  GN  L E++Q L
Sbjct: 126 LEIVEVLLKYGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 193 EMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASF 252
           ++  + + AAA G + ++ + L+ N  DV    D  G T LH AA  GQ+E+V+ L+ + 
Sbjct: 5   DLGKKLLEAAAAGQDDEV-RILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLKNG 62
Query: 253 DIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH-SAVSG 306
             +N++D  G TPLH+AAY G   +VE L L   + ++  + +G T LH +A+SG
Sbjct: 63  ADVNASDSAGITPLHLAAYDGHLEIVEVL-LKHGADVNAYDRAGWTPLHLAALSG 116

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 52/173 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L AAA  GQ + V+ L+A+   +N+TD  G TPLH+AA  GQ  +VE L+      
Sbjct: 7   GKKLLEAAAA-GQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL------ 59
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
              KN +                                         +NA ++ G T L
Sbjct: 60  ---KNGAD----------------------------------------VNASDSAGITPL 76
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
           H+A     HLE+V++L+   + +VN  D  G T L L     Q    ++L++H
Sbjct: 77  HLAAYDG-HLEIVEVLLKHGA-DVNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    D  G T LH AA  G +E+V+ L+ +   
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N+ DH G TPL +AA  G   +VE L L + + ++  +  G T LH A        F  
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVL-LKNGADVNANDMEGHTPLHLAA------MFGH 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
           L+    L+K  A          +NA++  G+TA  ++I  GN  L E++Q L
Sbjct: 126 LEIVEVLLKNGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H AA  G+L+I++ LL N  DV    D  G+T LH AA  G +E+V+ L+     +N+ 
Sbjct: 39  LHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAK 97
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
           D  G TPL++AAY G   +VE L+
Sbjct: 98  DATGITPLYLAAYWGHLEIVEVLL 121

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  D   Y D  G T LH AA  G +E+V+ L+ +   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADANAY-DHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N+ D  G TPLH+AA  G   +VE L L   + ++ K+ +G T L+ A        +  
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVL-LKYGADVNAKDATGITPLYLAAY------WGH 113
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQ 362
           L+    L+K  A          +NA++  G+TA  ++I  GN  L E++Q
Sbjct: 114 LEIVEVLLKHGAD---------VNAQDKFGKTAFDISIDIGNEDLAEILQ 154

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + R +  AAR G    ++ L+ N  DV    D  G+T LH AA  G +E+V+ L+     
Sbjct: 14  LGRKLLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           ++++D  G TPLH+AAY G   +VE L L + + ++  ++ G T LH A        +  
Sbjct: 73  VDASDVFGYTPLHLAAYWGHLEIVEVL-LKNGADVNAMDSDGMTPLHLAAK------WGY 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
           L+    L+K  A          +NA++  G+TA  ++I  GN  L E++Q L
Sbjct: 126 LEIVEVLLKHGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 52/173 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L AA   GQ + V+ L+A+   +N+ D+ G TPLH+AAY G   +VE L       
Sbjct: 15  GRKLLEAARA-GQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVL------- 66
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
                                               L  G   +  D+       G T L
Sbjct: 67  ------------------------------------LKHGADVDASDVF------GYTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
           H+A     HLE+V++L+   + +VN  D+DGMT L L  +       ++L++H
Sbjct: 85  HLAAYWG-HLEIVEVLLKNGA-DVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 21/173 (12%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    D  G T LH AA  G +E+V+ L+     
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH-SAVSGFQTYAFR 313
           +N+ D  G+TPLH+AA  G   +VE L L   + ++  +T G+T LH +A+ G       
Sbjct: 73  VNAIDIMGSTPLHLAALIGHLEIVEVL-LKHGADVNAVDTWGDTPLHLAAIMG------- 124
Query: 314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
            L+    L+K  A          +NA++  G+TA  ++I  GN  L E++Q L
Sbjct: 125 HLEIVEVLLKHGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 21/173 (12%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    D  G T LH AA  G +E+V+ L+     
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH-SAVSGFQTYAFR 313
           +N+ D  G+TPLH+AA  G   +VE L L   + ++  +T G+T LH +A+ G       
Sbjct: 73  VNAIDIXGSTPLHLAALIGHLEIVEVL-LKHGADVNAVDTWGDTPLHLAAIMG------- 124
Query: 314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
            L+    L+K  A          +NA++  G+TA  ++I  GN  L E++Q L
Sbjct: 125 HLEIVEVLLKHGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 20/198 (10%)
Query: 203 ARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG 262
           A  G L+ LKE +     + T  D+   T LH A   G  E+V+ L+     +N  D  G
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 263 NTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLM 322
            +PLHIAA  G+  +V+AL L   + ++  N +G T LH A S        R +  V L+
Sbjct: 74  WSPLHIAASAGRDEIVKAL-LGKGAQVNAVNQNGCTPLHYAASK------NRHEIAVMLL 126
Query: 323 KQLASGQIFNMEDIINAKNNDGRTALHMAIT-GNVHLELVQLLMSAPSINVNVRDNDGMT 381
           +  A+          +AK++   TA+H A   GN  L+++ +L+   + + N++D +G T
Sbjct: 127 EGGANP---------DAKDHYEATAMHRAAAKGN--LKMIHILLYYKA-STNIQDTEGNT 174
Query: 382 TLDLLKQRPQSASSDILI 399
            L L     +   + +L+
Sbjct: 175 PLHLACDEERVEEAKLLV 192

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 20/198 (10%)
Query: 203 ARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG 262
           A  G L+ LKE +     + T  D+   T LH A   G  E+V+ L+     +N  D  G
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 74
Query: 263 NTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLM 322
            +PLHIAA  G+  +V+AL L   + ++  N +G T LH A S        R +  V L+
Sbjct: 75  WSPLHIAASAGRDEIVKAL-LGKGAQVNAVNQNGCTPLHYAASK------NRHEIAVMLL 127
Query: 323 KQLASGQIFNMEDIINAKNNDGRTALH-MAITGNVHLELVQLLMSAPSINVNVRDNDGMT 381
           +  A+          +AK++   TA+H  A  GN  L+++ +L+   + + N++D +G T
Sbjct: 128 EGGANP---------DAKDHYEATAMHRAAAKGN--LKMIHILLYYKA-STNIQDTEGNT 175
Query: 382 TLDLLKQRPQSASSDILI 399
            L L     +   + +L+
Sbjct: 176 PLHLACDEERVEEAKLLV 193

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 186 IPSVY---KWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQV 242
           IPS Y   + E ++  +H AA+ GNL  L+E L+N   V    DK GST L+ A   G  
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHK 119
Query: 243 EVVKDLIASFDI-INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKN 293
           ++V+ L    +I +N  +  G+T LH AA++G   +V+ L+LA  +   ++N
Sbjct: 120 DIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQ-LLLAKGARTDLRN 170

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDII 255
           N  +H AA+ G+ + +K+LL    DV   R K G+T LH AA  G  E+VK L+A    +
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEAL 281
           N+    GNTP H+A   G   +V+ L
Sbjct: 69  NARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 20/198 (10%)
Query: 203 ARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG 262
           A  G L  LKE +     + T  D+   T LH A   G  E+V+ L+     +N  D  G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 263 NTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLM 322
            +PLHIAA  G+  +V+AL++    + +V N +G T LH A S        R +  V L+
Sbjct: 74  WSPLHIAASAGRDEIVKALLVKGAHVNAV-NQNGCTPLHYAASK------NRHEIAVMLL 126
Query: 323 KQLASGQIFNMEDIINAKNNDGRTALHMAIT-GNVHLELVQLLMSAPSINVNVRDNDGMT 381
           +  A+          +AK++   TA+H A   GN  L++V +L+   + + N++D +G T
Sbjct: 127 EGGANP---------DAKDHYDATAMHRAAAKGN--LKMVHILLFYKA-STNIQDTEGNT 174
Query: 382 TLDLLKQRPQSASSDILI 399
            L L     +   +  L+
Sbjct: 175 PLHLACDEERVEEAKFLV 192

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 120/255 (47%), Gaps = 30/255 (11%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H AA    ++I++ LL++  DV   +DK G   LH A   G  EV + L+     +N+ 
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM 120
Query: 259 DHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVS---------GF 307
           D    TPLH AA + +  V   L+   A P+++   N  G++ +  A +          F
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV---NCHGKSAVDMAPTPELRERLTYEF 177
Query: 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKN-NDGRTALHMAITGNVHLELVQL--L 364
           + ++  +  R+  L K   +  +    +IIN K      TALH A+  ++H +  Q+  L
Sbjct: 178 KGHSLLQAAREADLAKVKKTLAL----EIINFKQPQSHETALHCAV-ASLHPKRKQVAEL 232
Query: 365 MSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH--LISAGGIFGCQDYSARRAIAS 422
           +     NVN ++ D MT L +  +R  +   ++L +H   ++A    G Q    R A+A 
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLG-QTALHRAALAG 291
Query: 423 HIK----MLGNGSSP 433
           H++    +L  GS P
Sbjct: 292 HLQTCRLLLSYGSDP 306

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    D  G T LH AA  G +E+V+ L+     
Sbjct: 14  LGKKLLEAARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
           +++ D  G TPLH+AA  G   +VE L L   + ++  + +G T LH A
Sbjct: 73  VDAADVYGFTPLHLAAMTGHLEIVEVL-LKYGADVNAFDMTGSTPLHLA 120

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 20/198 (10%)
Query: 203 ARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG 262
           A  G L  LKE +     + T  D+   T LH A   G  E+V+ L+     +N  D  G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 263 NTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLM 322
            +PLHIAA  G   +V+AL++    + +V N +G T LH A S        R +  V L+
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASK------NRHEIAVMLL 126
Query: 323 KQLASGQIFNMEDIINAKNNDGRTALH-MAITGNVHLELVQLLMSAPSINVNVRDNDGMT 381
           +  A+          +AK++   TA+H  A  GN  L++V +L+   + + N++D +G T
Sbjct: 127 EGGANP---------DAKDHYDATAMHRAAAKGN--LKMVHILLFYKA-STNIQDTEGNT 174
Query: 382 TLDLLKQRPQSASSDILI 399
            L L     +   +  L+
Sbjct: 175 PLHLACDEERVEEAKFLV 192

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    D+ G T LH AA  G +E+V+ L+     
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
           +N+ D+ G TPLH+AA RG   +VE L+
Sbjct: 73  VNAEDNFGITPLHLAAIRGHLEIVEVLL 100

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  A R G    ++ L+ N  DV    D  G T LH AA RG +E+V+ L+     
Sbjct: 14  LGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
           +N++D  G TPLH+AA  G   +VE L+
Sbjct: 73  VNASDSWGRTPLHLAATVGHLEIVEVLL 100

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 52/157 (33%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L A    GQ + V+ L+A+   +N+ D  G TPLH+AA RG   +VE L       
Sbjct: 15  GKKLLEATRA-GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL------- 66
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
                                            +K  A          +NA ++ GRT L
Sbjct: 67  ---------------------------------LKHGAD---------VNASDSWGRTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
           H+A T   HLE+V++L+   + +VN +D  G T  D+
Sbjct: 85  HLAATVG-HLEIVEVLLEYGA-DVNAQDKFGKTAFDI 119

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    D++G+T LH AA    +E+V+ L+     
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
           +N+ D+ G+TPLH+AA  G   +VE L+
Sbjct: 73  VNAHDNDGSTPLHLAALFGHLEIVEVLL 100

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 52/157 (33%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L AA   GQ + V+ L+A+   +N+ D +GNTPLH+AA      +VE L       
Sbjct: 15  GKKLLEAARA-GQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVL------- 66
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
                                            +K  A          +NA +NDG T L
Sbjct: 67  ---------------------------------LKHGAD---------VNAHDNDGSTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
           H+A     HLE+V++L+   + +VN +D  G T  D+
Sbjct: 85  HLAALFG-HLEIVEVLLKHGA-DVNAQDKFGKTAFDI 119

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  A R G    ++ L+ N  DV    D  G T LH AA RG +E+V+ L+     
Sbjct: 14  LGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
           +N++D  G TPLH+AA  G   +VE L+
Sbjct: 73  VNASDIWGRTPLHLAATVGHLEIVEVLL 100

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 63/157 (40%), Gaps = 52/157 (33%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L A    GQ + V+ L+A+   +N+ D  G TPLH+AA RG   +VE L       
Sbjct: 15  GKKLLEATRA-GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL------- 66
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
                                               L  G   N  DI       GRT L
Sbjct: 67  ------------------------------------LKHGADVNASDIW------GRTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
           H+A T   HLE+V++L+   + +VN +D  G T  D+
Sbjct: 85  HLAATVG-HLEIVEVLLEYGA-DVNAQDKFGKTAFDI 119

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265
           GN +I + LL    +    +D+ G  ++H AA  GQ++ ++ L+     +N  D++GN P
Sbjct: 48  GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 266 LHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
           LH+AA  G   VVE L+  + S +  +N  G+T
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H A R G   +++ L+     +    ++   T LH AA  G  ++V+ L+     IN+ 
Sbjct: 43  LHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQ 318
           +  GN PLH A + GQ  V E L+ A+ +++S+ N  GE  +  A +  +     R ++ 
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160
Query: 319 VKLMKQLASGQIF 331
            + + ++     F
Sbjct: 161 GQNLNRIPYKDTF 173

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H A R G   +++ L+     +    ++   T LH AA  G  ++V+ L+     IN+ 
Sbjct: 38  LHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 96
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGE 297
           +  GN PLH A + GQ  V E L+ A+ +++S+ N  GE
Sbjct: 97  NEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGE 134

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  A R G    ++ L+ N  DV    D  G T LH AA RG +E+V+ L+     
Sbjct: 14  LGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
           +N+ D  G TPLH+AA  G   +VE L+
Sbjct: 73  VNARDIWGRTPLHLAATVGHLEIVEVLL 100

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 52/157 (33%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L A    GQ + V+ L+A+   +N+ D  G TPLH+AA RG   +VE L       
Sbjct: 15  GKKLLEATRA-GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL------- 66
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
                                            +K  A          +NA++  GRT L
Sbjct: 67  ---------------------------------LKHGAD---------VNARDIWGRTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
           H+A T   HLE+V++L+   + +VN +D  G T  D+
Sbjct: 85  HLAATVG-HLEIVEVLLEYGA-DVNAQDKFGKTAFDI 119

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 21/181 (11%)
Query: 190 YKWEMMNR--AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKD 247
           +K E  N+   +HAAA  G++ I   L++   ++ T  + Q + ++ AA     +E VK 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENN-HLEAVKY 62
Query: 248 LIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF 307
           LI +  +++  D +G+T LH+AA +G   VV+ L+      ++ ++  G T +  A    
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE-- 120
Query: 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALH-MAITGNVHLELVQLLMS 366
               ++ +D  VKL+  L+ G   N+ D      N+    LH  A +G V  ++ ++L++
Sbjct: 121 ----YKHVDL-VKLL--LSKGSDINIRD------NEENICLHWAAFSGCV--DIAEILLA 165
Query: 367 A 367
           A
Sbjct: 166 A 166

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H A+  G++  ++ LL+N +D    +D  G T LH A   G ++VV+ L+    ++N+T
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
            +Q ++PLH AA  G   +V+ L+
Sbjct: 73  GYQNDSPLHDAAKNGHVDIVKLLL 96

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265
           GN +I + LL    +    +D+ G  ++H AA  G ++ ++ L+ +   +N  D++GN P
Sbjct: 48  GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLP 106
Query: 266 LHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
           LH+AA  G   VVE L+  + S +  +N  G+T
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265
           GN +I + LL    +    +D+ G+ ++H AA  G ++ ++ L+     +N  D++GN P
Sbjct: 48  GNPEIARRLLLRGANP-DLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 266 LHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
           LH+AA  G   VVE L+  + S +  +N  G+T
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV   +D+ G T L+ A   G +E+V+ L+ +   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
           +N+ D  G TPLH+AA+ G   + E L+
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLL 100

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV    DK G T LH AA    +E+V+ L+ +   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
           +N+ D  G TPLH+ A  G   +VE L+
Sbjct: 73  VNAIDAIGETPLHLVAMYGHLEIVEVLL 100

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265
           GN +I + LL    +    +D+ G  ++H AA  G ++ ++ L+     +N  D++GN P
Sbjct: 48  GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 266 LHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
           LH+AA  G   VVE L+  + S +  +N  G+T
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265
           GN +I + LL    +    +D+ G  ++H AA  G ++ ++ L+     +N  D++GN P
Sbjct: 48  GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 266 LHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
           LH+AA  G   VVE L+  + S +  +N  G+T
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L  N  DV    D  G T LH AA  G +E+V+ L+ +   
Sbjct: 14  LGKKLLEAARAGQDDEVRILTANGADV-NANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
           +N+T + G TPLH+AA+     +VE L+
Sbjct: 73  VNATGNTGRTPLHLAAWADHLEIVEVLL 100

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +L AA   GQ + V+ L A+   +N+ D+ G+TPLH+AA  G   +VE L+     +
Sbjct: 15  GKKLLEAARA-GQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
            +  NT G T LH A           L+    L+K  A          +NA++  G+TA 
Sbjct: 74  NATGNT-GRTPLHLAAWA------DHLEIVEVLLKHGAD---------VNAQDKFGKTAF 117
Query: 349 HMAI-TGNVHL-ELVQLL 364
            ++I  GN  L E++Q L
Sbjct: 118 DISIDNGNEDLAEILQKL 135

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 223 TYRDKQGSTILHAAAGRGQVEVVKDLIASF-------DIINSTDHQGNTPLHIAAYRGQP 275
           T  D+ G T LH A  +G +  V  L+  F       DI N+      TPLH+A     P
Sbjct: 3   TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR---QTPLHLAVITTLP 59
Query: 276 AVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMED 335
           +VV  L+ A  S +++ +  G+T  H A         R       L+   A G +     
Sbjct: 60  SVVRLLVTAGASPMAL-DRHGQTAAHLACEHRSPTCLR------ALLDSAAPGTLD---- 108
Query: 336 IINAKNNDGRTALHMAITGNVHLELVQLLM 365
            + A+N DG TALH+A+      E VQLL+
Sbjct: 109 -LEARNYDGLTALHVAVNTECQ-ETVQLLL 136

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 21/209 (10%)
Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
           A+  AA   + K +KE+L++ T  +   D +G+T L+ A     +E+ K LI     IN 
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 258 TDHQGNTPLHIAAYRGQPAVVEALIL-ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD 316
            +   ++P   A  +G+  ++  ++  A+P +       G   + +A  G        +D
Sbjct: 68  QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG-------HID 120
Query: 317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI---TGN-VHLELVQLLMSAPSINV 372
             VKL+  L  G+    ED I+ +N+ G TAL  A+    GN ++ ++V+LLM   + + 
Sbjct: 121 -NVKLL--LEDGR----ED-IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA-DQ 171
Query: 373 NVRDNDGMTTLDLLKQRPQSASSDILIRH 401
           +++DN G T +D   Q+  +  S IL ++
Sbjct: 172 SIKDNSGRTAMDYANQKGYTEISKILAQY 200

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 17/180 (9%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           +H AA  G   ++  LL++  +    R+   +  LH A  +G  +VVK L+ S    N  
Sbjct: 90  LHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK 148
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQ 318
           D  GNTPL  A   G   +V AL+L   + I+  N  G T LH AV     +        
Sbjct: 149 DLSGNTPLIYACSGGHHELV-ALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL---- 203
Query: 319 VKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDND 378
             L+   AS Q+ N            RTA+  A   +  +EL+Q++ S  +   +V + D
Sbjct: 204 --LLLHGASVQVLNKRQ---------RTAVDCAEQNSKIMELLQVVPSCVASLDDVAETD 252

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 127/321 (39%), Gaps = 51/321 (15%)
Query: 111 LLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPR 170
           LL  A    D+  V+QLL+    + F E E G T +  A   S+  D+  L+      P 
Sbjct: 28  LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE-DIVELLLRHGADPV 86
Query: 171 FLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGS 230
                G          P +            AA  G++K+LK  L    DV    D  G 
Sbjct: 87  LRKKNGA--------TPFIL-----------AAIAGSVKLLKLFLSKGADV-NECDFYGF 126
Query: 231 TILHAAAGRGQVEVVKDLI---ASFDIINSTDHQ-------GNTPLHIAAYRGQPAVVEA 280
           T    AA  G+V+ +K L    A+ ++   T          G T L  AA +G   V++ 
Sbjct: 127 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 186
Query: 281 LILASPSMISVKNTSGE-TFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINA 339
           L+    + ++  +  G    +H+ +S          D  V+ +  L    + +    +N 
Sbjct: 187 LLDEMGADVNACDNMGRNALIHALLSSD--------DSDVEAITHL----LLDHGADVNV 234
Query: 340 KNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILI 399
           +   G+T L +A+    HL LVQ L+    I +N  D+DG T L L  +      +++L 
Sbjct: 235 RGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 293
Query: 400 RHLISAGGIFGCQDY--SARR 418
           +     G    C D   +ARR
Sbjct: 294 KR----GASTDCGDLVMTARR 310

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV   +DK GST LH AA  G +EVVK L+ +   
Sbjct: 6   LGKKLLEAARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEAL 281
           +N+ D  G T   I+   G   + E L
Sbjct: 65  VNAQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 26/197 (13%)
Query: 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD 253
           M N  +H A        ++ELL +   +L  +D+ G   LH +      E+   L++  +
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 254 IINSTDH---QGNTPLHIAAYRGQPAVVEALI--LASPSMISVKNTSGETFLHSAVSG-- 306
            +N  D+    G TP HIA   G   VV++L      P +  + N  G T LH AV    
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKW 119
Query: 307 FQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS 366
           F+   F        L++  AS +I         K+   +  LH A +    L+L++LL  
Sbjct: 120 FEVSQF--------LIENGASVRI---------KDKFNQIPLHRAASVG-SLKLIELLCG 161
Query: 367 APSINVNVRDNDGMTTL 383
                VN +D  G T L
Sbjct: 162 LGKSAVNWQDKQGWTPL 178

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 23/177 (12%)
Query: 222 LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
           L +++    T LH A    Q E+ + L+ +       D +GNTPLH+A  +G  A V  L
Sbjct: 35  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 282 ILA--SP---SMISVKNTSGETFLH-SAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMED 335
             +  +P   S++   N +G T LH +++ G+           V+L+  L +       D
Sbjct: 95  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI--------VELLVSLGA-------D 139
Query: 336 IINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQS 392
           +   +  +GRTALH+A+    + +LV LL+   + +VN     G +   L   RP +
Sbjct: 140 VNAQEPCNGRTALHLAVDLQ-NPDLVSLLLKCGA-DVNRVTYQGYSPYQLTWGRPST 194

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 26/197 (13%)
Query: 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD 253
           M N  +H A        ++ELL +   +L  +D+ G   LH +      E+   L++  +
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 254 IINSTDH---QGNTPLHIAAYRGQPAVVEALI--LASPSMISVKNTSGETFLHSAVSG-- 306
            +N  D+    G TP HIA   G   VV++L      P +  + N  G T LH AV    
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKW 119
Query: 307 FQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS 366
           F+   F        L++  AS +I         K+   +  LH A +    L+L++LL  
Sbjct: 120 FEVSQF--------LIENGASVRI---------KDKFNQIPLHRAASVG-SLKLIELLCG 161
Query: 367 APSINVNVRDNDGMTTL 383
                VN +D  G T L
Sbjct: 162 LGKSAVNWQDKQGWTPL 178

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 26/197 (13%)
Query: 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD 253
           M N  +H A        ++ELL +   +L  +D+ G   LH +      E+   L++  +
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 254 IINSTDH---QGNTPLHIAAYRGQPAVVEALI--LASPSMISVKNTSGETFLHSAVSG-- 306
            +N  D+    G TP HIA   G   VV++L      P +  + N  G T LH AV    
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKW 119
Query: 307 FQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS 366
           F+   F        L++  AS +I         K+   +  LH A +    L+L++LL  
Sbjct: 120 FEVSQF--------LIENGASVRI---------KDKFNQIPLHRAASVG-SLKLIELLCG 161
Query: 367 APSINVNVRDNDGMTTL 383
                VN +D  G T L
Sbjct: 162 LGKSAVNWQDKQGWTPL 178

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           VH AAR G L  LK L+E+  DV    D  G+  +H A   G   VV  L A  D ++  
Sbjct: 78  VHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESD-LHRR 135
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
           D +G TPL +A  RG   +V+ L
Sbjct: 136 DARGLTPLELALQRGAQDLVDIL 158

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 54/241 (22%)
Query: 182 HIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQ 241
           H+  I     W+++      A + G  +  +EL+E   DV    DK+  T+LH AA   +
Sbjct: 1   HMTHIDDYSTWDIVK-----ATQYGIYERCRELVEAGYDVRQ-PDKENVTLLHWAAINNR 54
Query: 242 VEVVKDLIASFDIINSTDHQGN-TPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGET 298
           +++VK  I+   I++      N TPLH A  +G  ++V  L+   A PS+I   +  G +
Sbjct: 55  IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCS 111
Query: 299 FLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMED----------------------- 335
            +H A     T     L         +A GQ  +M D                       
Sbjct: 112 CIHLAAQFGHTSIVAYL---------IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162
Query: 336 -IINAKNNDG-----RTALHMAI-TGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQ 388
              N   N G      TALH A+  GN    ++ LL+ A + NV+ ++  G + LDL KQ
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNT--TVISLLLEAGA-NVDAQNIKGESALDLAKQ 219
Query: 389 R 389
           R
Sbjct: 220 R 220

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 224 YRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL 283
           Y     S  +H  A +G++  +   I   ++IN TD +G TPL  AA  GQ AVVE L+ 
Sbjct: 14  YFQGANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ 73
Query: 284 --ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKN 341
             A P ++     S  +   +   G+       LD  V                 +N  +
Sbjct: 74  NGADPQLLGKGRESALSL--ACSKGYTDIVKMLLDCGVD----------------VNEYD 115
Query: 342 NDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
            +G T L  A+ GN H++ V++L+ + + +  +  + G  ++DL       +   ++  H
Sbjct: 116 WNGGTPLLYAVHGN-HVKCVKMLLESGA-DPTIETDSGYNSMDLAVALGYRSVQQVIESH 173
Query: 402 LI 403
           L+
Sbjct: 174 LL 175

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 196 NRAVHAAARGGNLKILKELLE----NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS 251
           +R +  AA+ G+++ +K+L      NC D+    + + ST LH AAG  +V VV+ L+  
Sbjct: 13  DRQLLEAAKAGDVETVKKLCTVQSVNCRDI----EGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 252 FDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
              +++ D  G  PLH A   G   V E L++   ++++V +    T LH A +
Sbjct: 69  GADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEAAA 121

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 196 NRAVHAAARGGNLKILKELLE----NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS 251
           +R +  AA+ G+++ +K+L      NC D+    + + ST LH AAG  +V VV+ L+  
Sbjct: 11  DRQLLEAAKAGDVETVKKLCTVQSVNCRDI----EGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 252 FDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
              +++ D  G  PLH A   G   V E L++   ++++V +    T LH A +
Sbjct: 67  GADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEAAA 119

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 196 NRAVHAAARGGNLKILKELLE----NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS 251
           +R +  AA+ G+++ +K+L      NC D+    + + ST LH AAG  +V VV+ L+  
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDI----EGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 252 FDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
              +++ D  G  PLH A   G   V E L++   ++++V +    T LH A +
Sbjct: 65  GADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEAAA 117

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
           VH AAR G L  LK L+E+  DV    D  G+  +H A   G   VV  L A  D ++  
Sbjct: 72  VHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESD-LHRR 129
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
           D +G TPL +A  RG   +V+ L
Sbjct: 130 DARGLTPLELALQRGAQDLVDIL 152

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 221 VLTYRDKQGSTILHAAAGRGQVEVVKDLIAS-FDIINSTDHQGNTPLH---IAAYRGQPA 276
           V+   D  G+T LH +       VV+ L+ S    ++  +  G +P+    +A  + Q  
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD 162
Query: 277 VVEALILASPSMISVKNT-SGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMED 335
           +   L L     I+ K + +G+T L  AVS            +V ++K L        E 
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVS----------HGRVDVVKAL-----LACEA 207
Query: 336 IINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASS 395
            +N +++DG TAL M    + H E+  LL++ PS ++++ D DG T L +     QS  +
Sbjct: 208 DVNVQDDDGSTAL-MCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIA 266
Query: 396 DIL 398
            +L
Sbjct: 267 SML 269

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Query: 233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMIS 290
           +H  A +G++  +   I   ++IN TD +G TPL  AA  GQ AVVE L+   A P ++ 
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 291 VKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM 350
               S  +   +   G+       LD  V                 +N  + +G T L  
Sbjct: 67  KGRESALSL--ACSKGYTDIVKMLLDCGVD----------------VNEYDWNGGTPLLY 108
Query: 351 AITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLI 403
           A+ GN H++ V++L+ + + +  +  + G  ++DL       +   ++  HL+
Sbjct: 109 AVHGN-HVKCVKMLLESGA-DPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Query: 233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMIS 290
           +H  A +G++  +   I   ++IN TD +G TPL  AA  GQ AVVE L+   A P ++ 
Sbjct: 5   VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 291 VKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM 350
               S  +   +   G+       LD  V                 +N  + +G T L  
Sbjct: 65  KGRESALSL--ACSKGYTDIVKMLLDCGVD----------------VNEYDWNGGTPLLY 106
Query: 351 AITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLI 403
           A+ GN H++ V++L+ + + +  +  + G  ++DL       +   ++  HL+
Sbjct: 107 AVHGN-HVKCVKMLLESGA-DPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 157

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 23/177 (12%)
Query: 222 LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
           L +++    T LH A    Q E+ + L+ +       D +GNTPLH+A  +G  A V  L
Sbjct: 38  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 282 I--LASP---SMISVKNTSGETFLH-SAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMED 335
                +P   S++   N +G T LH +++ G+           V+L+  L +       D
Sbjct: 98  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI--------VELLVSLGA-------D 142
Query: 336 IINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQS 392
           +   +  +GRTALH+A+    + +LV LL+   + +VN     G +   L   RP +
Sbjct: 143 VNAQEPCNGRTALHLAVDLQ-NPDLVSLLLKCGA-DVNRVTYQGYSPYQLTWGRPST 197

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 29/176 (16%)
Query: 233 LHAAAGRGQVEVVKDLIASFDII--NSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSM 288
           L  AA RG V+ V+ L+   +++  ++ +  G T L +  + G PAV   L+   ASP+ 
Sbjct: 14  LSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPN- 70
Query: 289 ISVKNTSGETFLHSAV-SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTA 347
             V++ SG + +H A  +GF       LD    L++  A          +NA ++ G   
Sbjct: 71  --VQDASGTSPVHDAARTGF-------LDTLKVLVEHGAD---------VNALDSTGSLP 112
Query: 348 LHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLI 403
           +H+AI    H  +V  L  AP  +++ RD  G+T L+L +QR      DIL  H++
Sbjct: 113 IHLAIREG-HSSVVSFL--APESDLHHRDASGLTPLELARQRGAQNLMDILQGHMM 165

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 29/176 (16%)
Query: 233 LHAAAGRGQVEVVKDLIASFDII--NSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSM 288
           L  AA RG V+ V+ L+   +++  ++ +  G T L +  + G PAV   L+   ASP+ 
Sbjct: 12  LSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPN- 68
Query: 289 ISVKNTSGETFLHSAV-SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTA 347
             V++ SG + +H A  +GF       LD    L++  A          +NA ++ G   
Sbjct: 69  --VQDASGTSPVHDAARTGF-------LDTLKVLVEHGAD---------VNALDSTGSLP 110
Query: 348 LHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLI 403
           +H+AI    H  +V  L  AP  +++ RD  G+T L+L +QR      DIL  H++
Sbjct: 111 IHLAIREG-HSSVVSFL--APESDLHHRDASGLTPLELARQRGAQNLMDILQGHMM 163

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N  DV   +DK GST LH AA  G +EVVK L+ +   
Sbjct: 24  LGKKLLEAARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEAL 281
           + + D  G T   I+   G   + E L
Sbjct: 83  VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 120/301 (39%), Gaps = 45/301 (14%)
Query: 111 LLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPR 170
           LL  A    D+  V+QLL+    + F E E G T +  A   S+  D+  L+      P 
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE-DIVELLLRHGADPV 66
Query: 171 FLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGS 230
                G          P +            AA  G++K+LK  L    DV    D  G 
Sbjct: 67  LRKKNGA--------TPFLL-----------AAIAGSVKLLKLFLSKGADV-NECDFYGF 106
Query: 231 TILHAAAGRGQVEVVKDLI---ASFDIINSTDHQ-------GNTPLHIAAYRGQPAVVEA 280
           T    AA  G+V+ +K L    A+ ++   T          G T L  AA +G   V++ 
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166
Query: 281 LILASPSMISVKNTSGE-TFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINA 339
           L+    + ++  +  G    +H+ +S          D  V+ +  L    + +    +N 
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLSSD--------DSDVEAITHL----LLDHGADVNV 214
Query: 340 KNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILI 399
           +   G+T L +A+    HL LVQ L+    I +N  D+DG T L L  +      +++L 
Sbjct: 215 RGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273
Query: 400 R 400
           +
Sbjct: 274 K 274

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	677
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-33
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-26
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-36
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-28
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-35
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-29
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-22
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-34
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-30
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-28
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-32
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-33
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-33
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-29
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-26
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-33
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-29
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-32
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-31
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-27
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-28
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-31
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-30
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-30
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-30
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-30
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-30
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-30
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-29
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-29
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-29
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-21
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-29
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-23
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-29
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-04
2rfa_A	232	Transient receptor potential cation channel subfa	2e-29
2rfa_A	232	Transient receptor potential cation channel subfa	1e-27
2rfa_A	232	Transient receptor potential cation channel subfa	3e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-29
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-28
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-25
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-23
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-29
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-28
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-18
2pnn_A	273	Transient receptor potential cation channel subfa	2e-27
2pnn_A	273	Transient receptor potential cation channel subfa	3e-16
2pnn_A	273	Transient receptor potential cation channel subfa	6e-14
2pnn_A	273	Transient receptor potential cation channel subfa	3e-12
2etb_A	256	Transient receptor potential cation channel subfam	8e-27
2etb_A	256	Transient receptor potential cation channel subfam	1e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-25
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-23
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-23
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-20
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-06

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  135 bits (343), Expect = 2e-36
 Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 31/211 (14%)

Query: 200 HAAARGGNLKILKELLENCTDV--LTYRDKQGSTILHAAAGRGQVEVVKDLIASFD--II 255
           H +      +I   LL    +V    Y D  G T  H A   G +EVVK L        +
Sbjct: 41  HWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL 100

Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAFR 313
           N   +QG T LH+A  +    V + LI   AS   + +K+   +  LH A S        
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAAS-------- 149

Query: 314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN 373
                +KL++ L        +  +N ++  G T L  A+    H +   LL+       +
Sbjct: 150 --VGSLKLIELL----CGLGKSAVNWQDKQGWTPLFHALAEG-HGDAAVLLVEKYGAEYD 202

Query: 374 VRDNDGMTTLDLLKQRPQSASSDILIRHLIS 404
           + DN G    D+       A ++ + +  ++
Sbjct: 203 LVDNKGAKAEDV-------ALNEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  126 bits (318), Expect = 4e-33
 Identities = 43/201 (21%), Positives = 71/201 (35%), Gaps = 42/201 (20%)

Query: 198 AVHAAARGGNLKILKELL-ENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFD 253
            +H A        ++ELL    + +L  +D+ G   LH +      E+   L+    + +
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63

Query: 254 IINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM-ISVKNTSGETFLHSAVSGFQTYAF 312
           + +  D  G TP HIA   G   VV++L        ++     G T LH AV        
Sbjct: 64  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG------- 116

Query: 313 RRLDRQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLELVQ 362
                                 ++          +  K+   +  LH A +    L+L++
Sbjct: 117 ------------------KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG-SLKLIE 157

Query: 363 LLMSAPSINVNVRDNDGMTTL 383
           LL       VN +D  G T L
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPL 178

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  107 bits (269), Expect = 2e-26
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 229 GSTILHAAAGRGQVEVVKDLIASFDI-INSTDHQGNTPLHIAAYRGQPAVVEALIL--AS 285
            +  LH A    +   V++L+ S    +   D  G  PLH +       +   L+    +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 286 PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI-INAKNNDG 344
            ++    + SG T  H A S         L+    ++K L            +N   N G
Sbjct: 62  VNLDDYPDDSGWTPFHIACS------VGNLE----VVKSL----YDRPLKPDLNKITNQG 107

Query: 345 RTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
            T LH+A+      E+ Q L+     +V ++D      L
Sbjct: 108 VTCLHLAVGKK-WFEVSQFLIEN-GASVRIKDKFNQIPL 144

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 94.8 bits (237), Expect = 4e-22
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 54/170 (31%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD-IIN 256
            +H A      ++ + L+EN   V   +DK     LH AA  G +++++ L       +N
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168

Query: 257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD 316
             D QG TPL  A   G       L+                  + A             
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEK----------------YGA------------- 199

Query: 317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS 366
                             +  +  +N G  A  +A    ++ ++ +  ++
Sbjct: 200 ------------------EY-DLVDNKGAKAEDVA----LNEQVKKFFLN 226

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  132 bits (335), Expect = 4e-36
 Identities = 37/190 (19%), Positives = 79/190 (41%), Gaps = 30/190 (15%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
           ++H  A  G L  LKE L    +++   D++G T L  A+  G++E V+ L+   A    
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD--- 61

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSG--FQTYAF 312
            +    +  + L +A+  G   +V  L+      I++ + +G T L  AV G   +    
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKC--- 117

Query: 313 RRLDRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSIN 371
                 V+ L+ + A          +  + + G T + +A+    + ++ Q++ +   + 
Sbjct: 118 ------VEALLARGAD---------LTTEADSGYTPMDLAVALG-YRKVQQVIENH-ILK 160

Query: 372 VNVRDNDGMT 381
           +   +     
Sbjct: 161 LFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  115 bits (291), Expect = 5e-30
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 29/163 (17%)

Query: 229 GSTILHAAAGRGQVEVVKDLIAS-FDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--AS 285
            S  +H  A +G+++ +K+ +    +++N  D +G TPL  A+  G+   V  L+   A 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 286 PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVK-LMKQLASGQIFNMEDIINAKNNDG 344
                +     E+ L  A +G  T         V  L+++            IN  + +G
Sbjct: 62  ---PHILAKERESALSLASTGGYTDI-------VGLLLERDVD---------INIYDWNG 102

Query: 345 RTALHMAITGNVHLELVQLLMS--APSINVNVRDNDGMTTLDL 385
            T L  A+ GN H++ V+ L++  A   ++    + G T +DL
Sbjct: 103 GTPLLYAVRGN-HVKCVEALLARGA---DLTTEADSGYTPMDL 141

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  135 bits (343), Expect = 7e-36
 Identities = 67/292 (22%), Positives = 102/292 (34%), Gaps = 63/292 (21%)

Query: 112 LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRF 171
           L  A    D+  V+QLL+    + F E E G T +  A  +    D+  L          
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV-QMSREDIVEL---------- 57

Query: 172 LTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGST 231
           L   G +                       AA  G++K+LK  L    DV    D  G T
Sbjct: 58  LLRHGADPVLR-----KKNGA----TPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFT 107

Query: 232 ILHAAAGRGQVEVVKDLI----------ASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
               AA  G+V+ +K L            + +        G T L  AA +G   V++ L
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

Query: 282 ILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI----- 336
           +    + ++  +  G   L  A+                      S    ++E I     
Sbjct: 168 LDEMGADVNACDNMGRNALIHALL---------------------SSDDSDVEAITHLLL 206

Query: 337 -----INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
                +N +   G+T L +A+    HL LVQ L+    I +N  D+DG T L
Sbjct: 207 DHGADVNVRGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTAL 257

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  113 bits (286), Expect = 4e-28
 Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 35/196 (17%)

Query: 198 AVHAAARGGNLKILKELLENCTDV---------LTYRDKQGSTILHAAAGRGQVEVVKDL 248
           A   AA  G +K LK L +   +V              K G+T L  AA +G VEV+K L
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

Query: 249 IASFDI-INSTDHQGNTPLHIAAYRGQ----PAVVEALIL--ASPSMISVKNTSGETFLH 301
           +      +N+ D+ G   L  A          A+   L+   A    ++V+   G+T L 
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLI 224

Query: 302 SAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELV 361
            AV            + + L+++L   +       IN  ++DG+TAL +A+      ++ 
Sbjct: 225 LAVEK----------KHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELK-LKKIA 269

Query: 362 QLLMSAPSINVNVRDN 377
           +LL      + +  D 
Sbjct: 270 ELLCKR-GASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  111 bits (281), Expect = 2e-27
 Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 47/212 (22%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +H A +     I++ LL +  D    R K G+T    AA  G V+++K  +   A    
Sbjct: 42  PLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD--- 97

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N  D  G T    AA  G+   ++ L     + ++++                      
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRR--------------------- 135

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374
                              ++        G TAL  A     H+E++++L+     +VN 
Sbjct: 136 -----------------KTKEDQERLRKGGATALMDAAEKG-HVEVLKILLDEMGADVNA 177

Query: 375 RDNDGMTTLDLLKQRPQSASSDILIRHLISAG 406
            DN G   L         +  + +   L+  G
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  103 bits (260), Expect = 8e-25
 Identities = 33/194 (17%), Positives = 61/194 (31%), Gaps = 57/194 (29%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +  A +  ++ ++++LLE   +V    ++ G T LH A    + ++V+ L+   A    
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD--- 64

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
                  G TP  +AA  G   +++  +                    A           
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFL-----------------SKGA----------- 96

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374
                               D+ N  +  G TA   A      ++ ++ L      NVN+
Sbjct: 97  --------------------DV-NECDFYGFTAFMEAAVYG-KVKALKFLYKR-GANVNL 133

Query: 375 RDNDGMTTLDLLKQ 388
           R         L K 
Sbjct: 134 RRKTKEDQERLRKG 147

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 93.3 bits (233), Expect = 3e-21
 Identities = 33/189 (17%), Positives = 59/189 (31%), Gaps = 70/189 (37%)

Query: 226 DKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQ-GNTPLHIAAYRGQPAVVEAL 281
             + + +L  A     V++V+ L+   A+   +N  + + G TPLH A    +  +VE L
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGAN---VNFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 282 ILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKN 341
           +                  H A                               D    + 
Sbjct: 59  L-----------------RHGA-------------------------------DP-VLRK 69

Query: 342 NDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASS----DI 397
            +G T   +A      ++L++L +S    +VN  D  G T           A+       
Sbjct: 70  KNGATPFLLAAIAG-SVKLLKLFLSK-GADVNECDFYGFTAF-------MEAAVYGKVKA 120

Query: 398 LIRHLISAG 406
            ++ L   G
Sbjct: 121 -LKFLYKRG 128

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  132 bits (335), Expect = 1e-35
 Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 28/194 (14%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            + AA +    K+ + L +    V    D +G+T L+ A     +E+ K LI   A    
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDE-VDTEGNTPLNIAVHNNDIEIAKALIDRGAD--- 64

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS-GFQTYAFR 313
           IN  +   ++P   A  +G+  ++  ++  +   ++  N  G   L  A   G       
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG------- 117

Query: 314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI----TGNVHLELVQLLMSAPS 369
                +  +K L      +    I+ +N+ G TAL  A+       ++ ++V+LLM    
Sbjct: 118 ----HIDNVKLLLEDGRED----IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-G 168

Query: 370 INVNVRDNDGMTTL 383
            + +++DN G T +
Sbjct: 169 ADQSIKDNSGRTAM 182

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  114 bits (288), Expect = 2e-29
 Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 25/176 (14%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS--FDII 255
            ++ A    +++I K L++   D+   ++    +    A  +G+ E++  ++     D+ 
Sbjct: 42  PLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL- 99

Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRL 315
           N  +  G   L  AA +G    V+ L+      I  +N  G T L  AV   +       
Sbjct: 100 NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN----- 154

Query: 316 DRQVKLMKQLASGQIFNMEDI-----INAKNNDGRTALHMAITGNVHLELVQLLMS 366
                ++K L          +      + K+N GRTA+  A     + E+ ++L  
Sbjct: 155 QLYQDIVKLL----------MENGADQSIKDNSGRTAMDYANQKG-YTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  104 bits (262), Expect = 7e-26
 Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 62/186 (33%)

Query: 225 RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILA 284
           +  +   +L AA  R   +V + L  +   ++  D +GNTPL+IA +     + +ALI  
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI-- 59

Query: 285 SPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDG 344
                             A                               DI N +N+  
Sbjct: 60  ---------------DRGA-------------------------------DI-NLQNSIS 72

Query: 345 RTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASS----DILIR 400
            +    A       E++  ++   + ++N  +  G   L         A+     D  ++
Sbjct: 73  DSPYLYAGAQG-RTEILAYMLKHATPDLNKHNRYGGNAL-------IPAAEKGHIDN-VK 123

Query: 401 HLISAG 406
            L+  G
Sbjct: 124 LLLEDG 129

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  138 bits (350), Expect = 2e-35
 Identities = 93/399 (23%), Positives = 138/399 (34%), Gaps = 105/399 (26%)

Query: 28  SPIDWAAANGHYDLVRELLR--IDGNHLIK--LTSLR---RIRRLETVWDDEEQFDDVAK 80
           +P+  AA  GH ++ + LL+     N   K   T L    RI     V            
Sbjct: 49  TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV------------ 96

Query: 81  CRSKVARKLFLEC------KSKNGKNSLIRAGYGGWL----------------------- 111
                  KL LE        +  G   L  A   G +                       
Sbjct: 97  -------KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP 149

Query: 112 LYTAASAGDLGFVKQLLDKNPLLVFG-----EGEYGVTDIFYAAARSKNCDVFRLIYDFA 166
           L+ AA  G +   + LL++             G+ G+T   + A    N D+ +L     
Sbjct: 150 LHVAAKYGKVRVAELLLER------DAHPNAAGKNGLT-PLHVAVHHNNLDIVKL----- 197

Query: 167 VSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRD 226
                L  +GG         P+   +      +H AA+   +++ + LL+          
Sbjct: 198 -----LLPRGGSPHS-----PAWNGY----TPLHIAAKQNQVEVARSLLQYGGSA-NAES 242

Query: 227 KQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASP 286
            QG T LH AA  G  E+V  L++     N  +  G TPLH+ A  G   V + LI    
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302

Query: 287 SMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRT 346
             +      G T LH A               +KL+K L   Q     D+ NAK   G +
Sbjct: 303 M-VDATTRMGYTPLHVASHY----------GNIKLVKFLLQHQA----DV-NAKTKLGYS 346

Query: 347 ALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
            LH A     H ++V LL+     + N   +DG T L +
Sbjct: 347 PLHQAAQQG-HTDIVTLLLKN-GASPNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  130 bits (330), Expect = 8e-33
 Identities = 82/389 (21%), Positives = 129/389 (33%), Gaps = 109/389 (28%)

Query: 28  SPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVAR 87
           +P+  AA  GH + V  LL  + +                                    
Sbjct: 115 TPLHIAAREGHVETVLALLEKEAS------------------------------------ 138

Query: 88  KLFLECKSKNGKNSLIRAGYGGWL-----------------------LYTAASAGDLGFV 124
                C +K G   L  A   G +                       L+ A    +L  V
Sbjct: 139 ---QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 195

Query: 125 KQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIE 184
           K LL +           G T +  AA ++   +V R           L   GG       
Sbjct: 196 KLLLPRGGS-PHSPAWNGYTPLHIAAKQN-QVEVARS----------LLQYGGSANA--- 240

Query: 185 EIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEV 244
              SV         +H AA+ G+ +++  LL    +     +K G T LH  A  G V V
Sbjct: 241 --ESVQGV----TPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPV 293

Query: 245 VKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHS 302
              LI    ++++T   G TPLH+A++ G   +V+ L+   A    ++ K   G + LH 
Sbjct: 294 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQ 350

Query: 303 AVSGFQTYAFRRLDRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELV 361
           A            D  V  L+K  AS          N  ++DG T L +A     ++ + 
Sbjct: 351 AAQQ------GHTD-IVTLLLKNGAS---------PNEVSSDGTTPLAIAKRLG-YISVT 393

Query: 362 QLLMSAPS--INVNVRDNDGMTTLDLLKQ 388
            +L         V V D   M+  + + +
Sbjct: 394 DVLKVVTDETSFVLVSDKHRMSFPETVDE 422

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  130 bits (330), Expect = 9e-33
 Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 39/217 (17%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +H A+  G+L I+K LL+         + +  T LH AA  G  EV K L+   A    
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK--- 72

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAV-SGFQTYAFR 313
           +N+      TPLH AA  G   +V+ L+  + +  ++  T+G T LH A   G       
Sbjct: 73  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREG------- 124

Query: 314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN 373
                V+ +  L   +              G T LH+A      + + +LL+     + N
Sbjct: 125 ----HVETVLALLEKEA----SQ-ACMTKKGFTPLHVAAKYG-KVRVAELLLER-DAHPN 173

Query: 374 VRDNDGMTTLDLLKQRPQSASS----DILIRHLISAG 406
               +G+T L         A      DI ++ L+  G
Sbjct: 174 AAGKNGLTPL-------HVAVHHNNLDI-VKLLLPRG 202

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  120 bits (303), Expect = 2e-29
 Identities = 71/384 (18%), Positives = 110/384 (28%), Gaps = 145/384 (37%)

Query: 28  SPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVAR 87
           +P+  A+  GH  +V+ LL+   +                                    
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGAS------------------------------------ 39

Query: 88  KLFLECKSKNGKNSLIRAGYGGWL-----------------------LYTAASAGDLGFV 124
                  +   +  L  A   G                         L+ AA  G    V
Sbjct: 40  ---PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV 96

Query: 125 KQLLDKNPLLVFG-----EGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGEL 179
           K LL+                 G T +  AA R  + +              L  K    
Sbjct: 97  KLLLEN------NANPNLATTAGHTPLHIAA-REGHVETVLA----------LLEKEASQ 139

Query: 180 EEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGR 239
               ++             +H AA+ G +++ + LLE          K G T LH A   
Sbjct: 140 ACMTKK---------GFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHH 189

Query: 240 GQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETF 299
             +++VK L+      +S    G TPLHIAA + Q  V  +L+                 
Sbjct: 190 NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL----------------- 232

Query: 300 LHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLE 359
            +                                    NA++  G T LH+A     H E
Sbjct: 233 QYGG-------------------------------SA-NAESVQGVTPLHLAAQEG-HAE 259

Query: 360 LVQLLMSAPSINVNVRDNDGMTTL 383
           +V LL+S    N N+ +  G+T L
Sbjct: 260 MVALLLSK-QANGNLGNKSGLTPL 282

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 99.1 bits (248), Expect = 3e-22
 Identities = 37/159 (23%), Positives = 57/159 (35%), Gaps = 51/159 (32%)

Query: 225 RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILA 284
             + G T LH A+  G + +VK+L+      N ++ +  TPLH+AA  G   V + L+  
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL-- 67

Query: 285 SPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDG 344
                           + A                                + NAK  D 
Sbjct: 68  ---------------QNKA-------------------------------KV-NAKAKDD 80

Query: 345 RTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
           +T LH A     H  +V+LL+   + N N+    G T L
Sbjct: 81  QTPLHCAARIG-HTNMVKLLLEN-NANPNLATTAGHTPL 117

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  130 bits (330), Expect = 1e-34
 Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 34/217 (15%)

Query: 198 AVHAAARGGN----LKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---A 250
            +H A         +++++++  +   +  +++    T LH A    Q E+ + L+    
Sbjct: 11  FLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGC 69

Query: 251 SFDIINSTDHQGNTPLHIAAYRGQPAVVEALI-----LASPSMISVKNTSGETFLHSAVS 305
                   D +GNTPLH+A  +G  A V  L          S++   N +G T LH A  
Sbjct: 70  D---PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS- 125

Query: 306 GFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNN-DGRTALHMAITGNVHLELVQLL 364
                    +   + +++ L S       D+ NA+   +GRTALH+A+    + +LV LL
Sbjct: 126 ---------IHGYLGIVELLVSLGA----DV-NAQEPCNGRTALHLAVDLQ-NPDLVSLL 170

Query: 365 MSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
           +     +VN     G +   L   RP +     L + 
Sbjct: 171 LKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  118 bits (299), Expect = 2e-30
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 17/163 (10%)

Query: 226 DKQGSTILHAAAGRGQ----VEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
            + G + LH A    +    +EV++ +      +N  ++   TPLH+A    QP + EAL
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 282 ILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKN 341
           + A      +++  G T LH A         +     V ++    S    ++  I+ A N
Sbjct: 65  LGAGCD-PELRDFRGNTPLHLA-------CEQGCLASVGVL--TQSCTTPHLHSILKATN 114

Query: 342 NDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN-DGMTTL 383
            +G T LH+A     +L +V+LL+S    +VN ++  +G T L
Sbjct: 115 YNGHTCLHLASIHG-YLGIVELLVSL-GADVNAQEPCNGRTAL 155

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  112 bits (282), Expect = 4e-28
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 30/195 (15%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI------ASFD 253
           H A      +I + LL    D    RD +G+T LH A  +G +  V  L           
Sbjct: 50  HLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108

Query: 254 IINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVK-NTSGETFLHSAVSGFQTY 310
           I+ +T++ G+T LH+A+  G   +VE L+   A    ++ +   +G T LH AV      
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHLAVD----- 160

Query: 311 AFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSI 370
                 +   L+  L         D+ N     G +   +   G     + Q L    ++
Sbjct: 161 -----LQNPDLVSLLLKCGA----DV-NRVTYQGYSPYQLT-WGRPSTRIQQQLGQL-TL 208

Query: 371 NVNVRDNDGMTTLDL 385
                  +       
Sbjct: 209 ENLQMLPESEDEESY 223

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 88.4 bits (220), Expect = 6e-20
 Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 25/171 (14%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTY-----RDKQGSTILHAAAGRGQVEVVKDLIASF 252
            +H A   G L  +  L ++CT    +      +  G T LH A+  G + +V+ L++  
Sbjct: 81  PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140

Query: 253 DIINSTDHQ-GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYA 311
             +N+ +   G T LH+A     P +V  L+      ++     G +             
Sbjct: 141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLT-------W 192

Query: 312 FRRLDRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELV 361
            R   R  + L +                   +               E  
Sbjct: 193 GRPSTRIQQQLGQLTLE---------NLQMLPESEDEESYDTESE-FTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 13/92 (14%)

Query: 292 KNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMA 351
               G++FLH A+              +++++Q+     F     +N +NN  +T LH+A
Sbjct: 4   LTEDGDSFLHLAII------HEEKALTMEVIRQVKGDLAF-----LNFQNNLQQTPLHLA 52

Query: 352 ITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
           +  N   E+ + L+ A   +  +RD  G T L
Sbjct: 53  VITN-QPEIAEALLGA-GCDPELRDFRGNTPL 82

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 1/82 (1%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
           A+H A    N  ++  LL+   DV      QG +      GR    + + L         
Sbjct: 154 ALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 212

Query: 258 TDHQGNTPLHIAAYRGQPAVVE 279
              +                 E
Sbjct: 213 MLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 339 AKNNDGRTALHMAITGN---VHLELVQLLMSAPSINVNVRDNDGMTTL 383
               DG + LH+AI      + +E+++ +       +N ++N   T L
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL-AFLNFQNNLQQTPL 49

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  128 bits (324), Expect = 8e-34
 Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 26/190 (13%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +HAAA  G++ I   L++   ++     +   T L  AA    +E VK LI   A    
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL--- 69

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           ++  D +G+T LH+AA +G   VV+ L+      ++ ++  G T +  A        ++ 
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE------YKH 123

Query: 315 LDRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN 373
           +D  VK L+ + +          IN ++N+    LH A      +++ ++L++A   +++
Sbjct: 124 VD-LVKLLLSKGSD---------INIRDNEENICLHWAAFSG-CVDIAEILLAA-KCDLH 171

Query: 374 VRDNDGMTTL 383
             +  G + L
Sbjct: 172 AVNIHGDSPL 181

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  124 bits (315), Expect = 1e-32
 Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 46/223 (20%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS--FDII 255
            +  AA   +L+ +K L++    V   +D +GST LH AA +G  EVV+ L+++   D+ 
Sbjct: 47  PLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV- 104

Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAFR 313
           N  D  G TP+  A       +V+ L+   +    I++++      LH A          
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD---INIRDNEENICLHWAAF-------- 153

Query: 314 RLDRQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLELVQL 363
                                DI          ++A N  G + LH+A   N   + V L
Sbjct: 154 -----------------SGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN-RYDCVVL 195

Query: 364 LMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAG 406
            +S    +V +++ +G T L       Q  S+  + + L  + 
Sbjct: 196 FLSR-DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  115 bits (291), Expect = 3e-29
 Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 23/162 (14%)

Query: 225 RDKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
             +   + LHAAA  G V++   L+   A+   I++      TPL  AA       V+ L
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAGAN---IDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 282 ILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKN 341
           I A    +  K+  G T LH A                ++++ L S    +    +N ++
Sbjct: 64  IKAGAL-VDPKDAEGSTCLHLAAK----------KGHYEVVQYLLSNGQMD----VNCQD 108

Query: 342 NDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
           + G T +  A     H++LV+LL+S    ++N+RDN+    L
Sbjct: 109 DGGWTPMIWATEYK-HVDLVKLLLSK-GSDINIRDNEENICL 148

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 80.1 bits (199), Expect = 5e-17
 Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 27/174 (15%)

Query: 112 LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRF 171
           L+ AA  G    V+ LL    + V  + + G T + +A    K+ D+ +L          
Sbjct: 81  LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT-EYKHVDLVKL---------- 129

Query: 172 LTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGST 231
           L +KG ++           +    N  +H AA  G + I + LL    D+    +  G +
Sbjct: 130 LLSKGSDINI---------RDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDS 179

Query: 232 ILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
            LH AA   + + V   +   +    +   + +G TPL  A+   Q      + 
Sbjct: 180 PLHIAARENRYDCVVLFLSRDSD---VTLKNKEGETPLQCASLNSQVWSALQMS 230

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 75.1 bits (186), Expect = 2e-15
 Identities = 26/129 (20%), Positives = 37/129 (28%), Gaps = 51/129 (39%)

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
                    +PLH AA  G   +   L+                    A           
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLV-----------------QAGA----------- 35

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374
                               +I +  + D RT L  A   N HLE V+ L+ A    V+ 
Sbjct: 36  --------------------NI-DTCSEDQRTPLMEAAENN-HLEAVKYLIKA-GALVDP 72

Query: 375 RDNDGMTTL 383
           +D +G T L
Sbjct: 73  KDAEGSTCL 81

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 62.0 bits (152), Expect = 7e-11
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 14/74 (18%)

Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASS- 395
              ++ + R+ LH A     H+++  +L+ A   N++    D  T L         A+  
Sbjct: 4   FKMEHQNKRSPLHAAAEAG-HVDICHMLVQA-GANIDTCSEDQRTPL-------MEAAEN 54

Query: 396 ---DILIRHLISAG 406
              +  +++LI AG
Sbjct: 55  NHLEA-VKYLIKAG 67

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  127 bits (322), Expect = 1e-33
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 27/188 (14%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
                   G   ++             + +     LH AA RG +  +++ + +   +N 
Sbjct: 48  NWWKGTSKGRTGLIPSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG 101

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFR-RLD 316
            D  G+T L+ A + G   +VE L       ++ +N  G+T LH+A       A++   D
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA-------AWKGYAD 154

Query: 317 RQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVR 375
             V+ L+ + A           + +N + + A  MA        L++           + 
Sbjct: 155 -IVQLLLAKGAR---------TDLRNIEKKLAFDMATNAA-CASLLKKKQGT-DAVRTLS 202

Query: 376 DNDGMTTL 383
           + +     
Sbjct: 203 NAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  127 bits (321), Expect = 1e-33
 Identities = 35/211 (16%), Positives = 71/211 (33%), Gaps = 31/211 (14%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
            V  A      +   EL     D+  Y      T       +G+  ++         +  
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDI-IYITDMSDTNWWKGTSKGRTGLIPSNY-----VAE 68

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDR 317
                + PLH AA RG  + +   +      ++  + +G T L+ A  G           
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHG----------G 117

Query: 318 QVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN 377
              +++ L           +N +N  G TALH A     + ++VQLL++      ++R+ 
Sbjct: 118 HKDIVEML----FTQPNIELNQQNKLGDTALHAAAWKG-YADIVQLLLAK-GARTDLRNI 171

Query: 378 DGMTTLDLLKQRPQSASSDIL--IRHLISAG 406
           +     D+      + ++     ++      
Sbjct: 172 EKKLAFDM------ATNAACASLLKKKQGTD 196

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  113 bits (285), Expect = 9e-29
 Identities = 29/160 (18%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 225 RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILA 284
             K G   +  A    +     +L      I       +T       +G+  ++ +    
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNY-- 65

Query: 285 SPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVK-LMKQLASGQIFNMEDIINAKNND 343
               ++ +  S +  LH A       A R     ++  +              +N  +  
Sbjct: 66  ----VAEQAESIDNPLHEA-------AKRGNLSWLRECLDNRVG---------VNGLDKA 105

Query: 344 GRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
           G TAL+ A  G  H ++V++L + P+I +N ++  G T L
Sbjct: 106 GSTALYWACHGG-HKDIVEMLFTQPNIELNQQNKLGDTAL 144

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  105 bits (264), Expect = 6e-26
 Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 19/160 (11%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI-INST 258
           H AA+ GNL  L+E L+N   V    DK GST L+ A   G  ++V+ L    +I +N  
Sbjct: 78  HEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ 136

Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQ 318
           +  G+T LH AA++G   +V+ L+        ++N   +     A +             
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATN----------AAC 185

Query: 319 VKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHL 358
             L+K+           +    N +       +     H 
Sbjct: 186 ASLLKKKQGTDA-----VRTLSNAEDYLDDEDS-DLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 82.3 bits (204), Expect = 5e-18
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 23/128 (17%)

Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRL 315
                 G   +  A Y  +P   + L +     I       +T      S          
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTS---------- 54

Query: 316 DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVR 375
             +  L+              +  +       LH A     +L  ++  +    + VN  
Sbjct: 55  KGRTGLIPSN----------YVAEQAESIDNPLHEAAKRG-NLSWLRECLDN-RVGVNGL 102

Query: 376 DNDGMTTL 383
           D  G T L
Sbjct: 103 DKAGSTAL 110

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 73.0 bits (180), Expect = 9e-15
 Identities = 39/249 (15%), Positives = 83/249 (33%), Gaps = 50/249 (20%)

Query: 29  PIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARK 88
            +  A          EL  I+   +I +T +       T W     +   +K R+ +   
Sbjct: 15  KVFRALYTFEPRTPDELY-IEEGDIIYITDMSD-----TNW-----WKGTSKGRTGLIPS 63

Query: 89  LFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLL----DKNPLLVFGEGEYGVT 144
            ++  ++++  N L          + AA  G+L ++++ L      N     G  + G T
Sbjct: 64  NYVAEQAESIDNPL----------HEAAKRGNLSWLRECLDNRVGVN-----GLDKAGST 108

Query: 145 DIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAAR 204
            + Y A    + D+  +           T    EL +         + ++ + A+HAAA 
Sbjct: 109 AL-YWACHGGHKDIVEM---------LFTQPNIELNQ---------QNKLGDTALHAAAW 149

Query: 205 GGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNT 264
            G   I++ LL         R+ +       A       ++K    +  +   ++ +   
Sbjct: 150 KGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYL 208

Query: 265 PLHIAAYRG 273
               +    
Sbjct: 209 DDEDSDLEH 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  127 bits (322), Expect = 1e-33
 Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 43/192 (22%)

Query: 205 GGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQ 261
           G    ++ + +     +    D+ G T LH AA   + +  K L+   A     N  D+ 
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD---ANIQDNM 57

Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKL 321
           G TPLH A       V + LI    + +  +   G T L  A                  
Sbjct: 58  GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA----------------- 100

Query: 322 MKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLELVQLLMSAPSIN 371
                      +E +          +NA ++ G++ALH A   N +++   +L+     N
Sbjct: 101 --------RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN-NVDAAVVLLKN-GAN 150

Query: 372 VNVRDNDGMTTL 383
            ++++N   T L
Sbjct: 151 KDMQNNREETPL 162

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  126 bits (320), Expect = 2e-33
 Identities = 53/228 (23%), Positives = 79/228 (34%), Gaps = 60/228 (26%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
           A+H AAR       K LLE   D    +D  G T LHAA       V + LI   A+   
Sbjct: 28  ALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRAT--D 84

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAF 312
           +++  H G TPL +AA      ++E LI   A    ++  +  G++ LH A         
Sbjct: 85  LDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAA-------- 133

Query: 313 RRLDRQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLELVQ 362
                              N  D            + +NN   T L +A       E  +
Sbjct: 134 -----------------AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG-SYETAK 175

Query: 363 LLMSAPSINVNVRDNDGMTTLDLLKQRPQSASS----DILIRHLISAG 406
           +L+     N ++ D+      D+       A      DI +R L    
Sbjct: 176 VLLDH-FANRDITDHMDRLPRDI-------AQERMHHDI-VRLLDEYN 214

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  130 bits (330), Expect = 2e-33
 Identities = 43/374 (11%), Positives = 97/374 (25%), Gaps = 90/374 (24%)

Query: 32  WAAANGHYDLVRELLRIDGNHLIK--LTSLR---RIRRLETVWDDEEQFDDVAKCRSKVA 86
            A   G  D  + L  +   H +      +       + + V                  
Sbjct: 59  LACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLV------------------ 100

Query: 87  RKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDI 146
               +E   + G+                    +    +                G T +
Sbjct: 101 -VALVEGAKERGQMPE----------SLLNECDEREVNEIGSHVK-------HCKGQTAL 142

Query: 147 FYAAARSKNC-DVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARG 205
            +         ++ ++          L   G              K +     +  A   
Sbjct: 143 HWCVGLGPEYLEMIKI----------LVQLGASPTA---------KDKADETPLMRAMEF 183

Query: 206 GNLKILKELLENCTDV----LTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDIINST 258
            N + L  +++         L Y +KQG++ LH A      +V    +        +N  
Sbjct: 184 RNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID---VNME 240

Query: 259 DHQGNTPLHIAAYRGQPAVVEALI--LASPSMISVKNTSGETFLHSAVSGFQT--YA--F 312
           D++   PL+++       + + L+       + +    +G T L   V        A   
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300

Query: 313 RRLDRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSIN 371
            + +  ++ L ++L           +    N G               + ++ ++ PS  
Sbjct: 301 SKQEV-LQLLQEKLDE---------VVRSLNTGAGGAVKRKKKA-APAVKRMKLA-PSAP 348

Query: 372 VNVRDNDGMTTLDL 385
           V  R      +  +
Sbjct: 349 VRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  129 bits (326), Expect = 7e-33
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 33/187 (17%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
            +H AAR G    ++ L+E      T +++ G T LH A   G V+  K L +  ++ + 
Sbjct: 23  KIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL 81

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDR 317
               G  P+H+A    +  +V AL       +      G+                    
Sbjct: 82  WH--GQKPIHLAVMANKTDLVVAL-------VEGAKERGQMPESLLNE------------ 120

Query: 318 QVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHLELVQLLMSAPSINVNVRD 376
                      +    E   + K+  G+TALH  +  G  +LE++++L+     +   +D
Sbjct: 121 ---------CDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKD 170

Query: 377 NDGMTTL 383
               T L
Sbjct: 171 KADETPL 177

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  123 bits (310), Expect = 1e-30
 Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 42/194 (21%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
           A+H A + G +   K L              G   +H A    + ++V  L      +  
Sbjct: 56  ALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMANKTDLVVAL------VEG 106

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDR 317
              +G  P  +     +  V E           VK+  G+T LH  V     Y       
Sbjct: 107 AKERGQMPESLLNECDEREVNEIG-------SHVKHCKGQTALHWCVGLGPEY------- 152

Query: 318 QVKLMKQL----ASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPS---- 369
            ++++K L    AS           AK+    T L  A+    + E + L+M        
Sbjct: 153 -LEMIKILVQLGAS---------PTAKDKADETPLMRAMEFR-NREALDLMMDTVPSKSS 201

Query: 370 INVNVRDNDGMTTL 383
           + ++  +  G + L
Sbjct: 202 LRLDYANKQGNSHL 215

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  111 bits (281), Expect = 6e-27
 Identities = 53/308 (17%), Positives = 94/308 (30%), Gaps = 69/308 (22%)

Query: 112 LYTAASAGDLGFVKQLL-------DKN---PLLVFGEGEYGVTDIFYAAARSKNCDVFR- 160
           L+ A   G +   K L          +   P+              + A  +   D+   
Sbjct: 57  LHLACKFGCVDTAKYLASVGEVHSLWHGQKPI--------------HLAVMANKTDLVVA 102

Query: 161 LIY---DFAVSPRFLTAKGGELE--EHIEEIPSVYKWEMMNRAVHAAARGGN--LKILKE 213
           L+    +    P  L  +  E E  E    +           A+H     G   L+++K 
Sbjct: 103 LVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQ----TALHWCVGLGPEYLEMIKI 158

Query: 214 LLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI-----INSTDHQGNTPLHI 268
           L++      T +DK   T L  A      E +  ++ +        ++  + QGN+ LH 
Sbjct: 159 LVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217

Query: 269 AAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLAS- 327
           A       V    +      +++++      L+ +V              V L K+L   
Sbjct: 218 AILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRA----------AMVLLTKELLQK 266

Query: 328 GQIFNMEDIINAKNNDGRTAL----------HMAITGNVHLELVQLLMSAPSINVNVRDN 377
             +F    I     ++G T L            A   +   E++QLL       V    N
Sbjct: 267 TDVFL---IQACPYHNGTTVLPDRVVWLDFVPAAADPS-KQEVLQLLQEK-LDEVVRSLN 321

Query: 378 DGMTTLDL 385
            G      
Sbjct: 322 TGAGGAVK 329

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  104 bits (261), Expect = 3e-24
 Identities = 30/162 (18%), Positives = 50/162 (30%), Gaps = 38/162 (23%)

Query: 225 RDKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
            D +    +H AA +GQ + V+ LI    S       +  G T LH+A   G     + L
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVS---PTIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 282 ILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKN 341
                         G+  +H AV             +  L+  L           +    
Sbjct: 73  ASVG---EVHSLWHGQKPIHLAVMA----------NKTDLVVAL-----------VEGAK 108

Query: 342 NDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
             G+    +    +   E+ +       I  +V+   G T L
Sbjct: 109 ERGQMPESLLNECD-EREVNE-------IGSHVKHCKGQTAL 142

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 22/156 (14%), Positives = 36/156 (23%), Gaps = 65/156 (41%)

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
              +D +    +H+AA +GQ   V  LI                                
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLI-----------------ETGV----------- 44

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374
                                    +N  G TALH+A      ++  + L S        
Sbjct: 45  --------------------SP-TIQNRFGCTALHLACKFG-CVDTAKYLASV---GEVH 79

Query: 375 RDNDGMTTLDLLKQRPQSASS----DILIRHLISAG 406
               G   +         A      D+ +  L+   
Sbjct: 80  SLWHGQKPI-------HLAVMANKTDL-VVALVEGA 107

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 327 SGQIFNMEDI-INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
            G + +   +     +++    +H+A       + V+ L+    ++  +++  G T L
Sbjct: 2   PGSMTDFPKLNRIKSDDENMEKIHVAARKG-QTDEVRRLIET-GVSPTIQNRFGCTAL 57

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  124 bits (313), Expect = 4e-33
 Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 31/187 (16%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
           +VH  A  G +  L   +E    +  + D++G T L  AA  GQ+ VV+ L+   A    
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD--- 61

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSG--FQTYAF 312
                    + L +A  +G   +V+ L+      ++  + +G T L  AV G   +    
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKC--- 117

Query: 313 RRLDRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSIN 371
                 VK L++  A             + + G  ++ +A+    +  + Q++ S   + 
Sbjct: 118 ------VKMLLESGAD---------PTIETDSGYNSMDLAVALG-YRSVQQVIESH-LLK 160

Query: 372 VNVRDND 378
           +     +
Sbjct: 161 LLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  113 bits (286), Expect = 2e-29
 Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 46/171 (26%)

Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASP 286
            S  +H  A +G++  +   I   ++IN TD +G TPL  AA  GQ AVVE L+   A  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD- 61

Query: 287 SMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI---------- 336
               +     E+ L  A S                             DI          
Sbjct: 62  --PQLLGKGRESALSLACSK-------------------------GYTDIVKMLLDCGVD 94

Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMS--APSINVNVRDNDGMTTLDL 385
           +N  + +G T L  A+ GN H++ V++L+   A   +  +  + G  ++DL
Sbjct: 95  VNEYDWNGGTPLLYAVHGN-HVKCVKMLLESGA---DPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 64.3 bits (158), Expect = 2e-12
 Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 67/151 (44%)

Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKL 321
            +  +H  A +G+   +                                           
Sbjct: 3   NSLSVHQLAAQGEMLYLAT----------------------------------------R 22

Query: 322 MKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS--APSINVNVRDNDG 379
           ++Q            IN  + +G T L  A      + +V+ L+   A   +  +     
Sbjct: 23  IEQENV---------INHTDEEGFTPLMWAAAHG-QIAVVEFLLQNGA---DPQLLGKGR 69

Query: 380 MTTLDLLKQRPQSASS----DILIRHLISAG 406
            + L L       A S    DI ++ L+  G
Sbjct: 70  ESALSL-------ACSKGYTDI-VKMLLDCG 92

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.5 bits (109), Expect = 8e-06
 Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 2/41 (4%)

Query: 343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
               ++H        +  +   +      +N  D +G T L
Sbjct: 2   ANSLSVHQLAAQG-EMLYLATRIEQ-ENVINHTDEEGFTPL 40

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  125 bits (316), Expect = 1e-32
 Identities = 52/227 (22%), Positives = 80/227 (35%), Gaps = 56/227 (24%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
           A+H AAR       K LLE   D    +D  G T LHAA       V + LI   A+   
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRAT--D 116

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +++  H G TPL +AA      ++E LI +    ++  +  G++ LH A +         
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAA--------- 166

Query: 315 LDRQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLELVQLL 364
                            N  D            + +NN   T L +A       E  ++L
Sbjct: 167 ----------------VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG-SYETAKVL 209

Query: 365 MSAPSINVNVRDNDGMTTLDLLKQRPQSASS----DILIRHLISAGG 407
           +     N ++ D+      D+       A      DI +R L     
Sbjct: 210 LDH-FANRDITDHMDRLPRDI-------AQERMHHDI-VRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  123 bits (312), Expect = 5e-32
 Identities = 39/199 (19%), Positives = 71/199 (35%), Gaps = 43/199 (21%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
             ++        ++ + +     +    D+ G T LH AA   + +  K L+   A    
Sbjct: 26  TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD--- 82

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
            N  D+ G TPLH A       V + LI    + +  +   G T L  A           
Sbjct: 83  ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA---------- 132

Query: 315 LDRQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLELVQLL 364
                             +E +          +NA ++ G++ALH A   N +++   +L
Sbjct: 133 ---------------RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN-NVDAAVVL 176

Query: 365 MSAPSINVNVRDNDGMTTL 383
           +     N ++++N   T L
Sbjct: 177 LKN-GANKDMQNNREETPL 194

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  112 bits (284), Expect = 3e-28
 Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 35/175 (20%)

Query: 225 RDKQGSTILHAAAGRGQV-------------EVVKDLI---ASFDIINSTDHQGNTPLHI 268
           R   G T L  A+  G                V+ D I   A   + N TD  G T LH+
Sbjct: 6   RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA--SLHNQTDRTGETALHL 63

Query: 269 AAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASG 328
           AA   +    + L+ AS    ++++  G T LH+AVS               + + L   
Sbjct: 64  AARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVS----------ADAQGVFQIL--- 109

Query: 329 QIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
            I N    ++A+ +DG T L +A        +++ L+++   +VN  D+ G + L
Sbjct: 110 -IRNRATDLDARMHDGTTPLILAARLA-VEGMLEDLINS-HADVNAVDDLGKSAL 161

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.5 bits (179), Expect = 2e-14
 Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 39/130 (30%)

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N     G TPL IA+  G                  +  +                   
Sbjct: 3   VNVRGPDGFTPLMIASCSGG--------GLETGNSEEEEDAPAV---------------- 38

Query: 315 LDRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN 373
               +   + Q A         + N  +  G TALH+A   +   +  + L+ A S + N
Sbjct: 39  ----ISDFIYQGA--------SLHNQTDRTGETALHLAARYS-RSDAAKRLLEA-SADAN 84

Query: 374 VRDNDGMTTL 383
           ++DN G T L
Sbjct: 85  IQDNMGRTPL 94

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  122 bits (309), Expect = 9e-32
 Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 40/219 (18%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
            +H AA    + ++K  +     V        ST LH A  +G + +V  L+      + 
Sbjct: 45  LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSM---ISVKNTSGETFLHSAVSGFQTYAFRR 314
            D +G + +H+AA  G  ++V  LI    +    + + + +G T L  A       A+R 
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLI----AKGQDVDMMDQNGMTPLMWA-------AYRT 153

Query: 315 LDRQ-VK-LMKQLASGQIFNMEDIINAKNN-DGRTALHMAITGNVHLELVQLLMSAPSIN 371
                 + L+    S         +N  +     TALH A+    +  ++ LL+ A   N
Sbjct: 154 HSVDPTRLLLTFNVS---------VNLGDKYHKNTALHWAVLAG-NTTVISLLLEA-GAN 202

Query: 372 VNVRDNDGMTTLDLLKQRPQSASS----DILIRHLISAG 406
           V+ ++  G + LDL       A       + I HL  A 
Sbjct: 203 VDAQNIKGESALDL-------AKQRKNVWM-INHLQEAR 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  119 bits (302), Expect = 9e-31
 Identities = 57/268 (21%), Positives = 101/268 (37%), Gaps = 50/268 (18%)

Query: 107 YGGWLLYTAASAGDLGFVKQLL----DKNPLLVFGEGEYGVTDIFYAAARSKNC-DVFRL 161
           Y  W +  A   G     ++L+    D          +  VT + +AA    N  D+ + 
Sbjct: 8   YSTWDIVKATQYGIYERCRELVEAGYDVR-----QPDKENVTLLHWAA--INNRIDLVKY 60

Query: 162 IYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDV 221
                       +KG      ++++            +H A R G+L ++ +L++   D 
Sbjct: 61  ----------YISKGAI----VDQLGGDLNS----TPLHWATRQGHLSMVVQLMKYGADP 102

Query: 222 LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG-QPAVVEA 280
            +  D +G + +H AA  G   +V  LIA    ++  D  G TPL  AAYR         
Sbjct: 103 -SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161

Query: 281 LILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVK-LMKQLASGQIFNMEDIINA 339
           L+  + S+         T LH AV              +  L++  A+         ++A
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVL------AGNTTV-ISLLLEAGAN---------VDA 205

Query: 340 KNNDGRTALHMAITGNVHLELVQLLMSA 367
           +N  G +AL +A     ++ ++  L  A
Sbjct: 206 QNIKGESALDLAKQRK-NVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  118 bits (299), Expect = 3e-30
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 50/203 (24%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +  A + G  +  +EL+E   DV    DK+  T+LH AA   ++++VK  I   A    
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAI--- 67

Query: 255 INSTDH-QGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYA 311
           ++       +TPLH A  +G  ++V  L+   A     S+ +  G + +H A        
Sbjct: 68  VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD---PSLIDGEGCSCIHLAAQ------ 118

Query: 312 FRRLDRQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLELV 361
                              F    I          ++  + +G T L  A      ++  
Sbjct: 119 -------------------FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPT 159

Query: 362 QLLMSAPSINVNVRDN-DGMTTL 383
           +LL++  +++VN+ D     T L
Sbjct: 160 RLLLTF-NVSVNLGDKYHKNTAL 181

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  110 bits (279), Expect = 1e-27
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 25/163 (15%)

Query: 225 RDKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
            D   +  +  A   G  E  ++L+        +   D +  T LH AA   +  +V+  
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYD---VRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 282 ILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVK-LMKQLASGQIFNMEDIINAK 340
           I     +  +      T LH A               V  LMK  A           +  
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSM-------VVQLMKYGAD---------PSLI 105

Query: 341 NNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
           + +G + +H+A     H  +V  L++    +V++ D +GMT L
Sbjct: 106 DGEGCSCIHLAAQFG-HTSIVAYLIAK-GQDVDMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 84.8 bits (211), Expect = 1e-18
 Identities = 29/167 (17%), Positives = 48/167 (28%), Gaps = 51/167 (30%)

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +   D      +  A   G       L+ A    +   +    T LH A           
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAA---------- 50

Query: 315 LDRQVKLMKQLASGQIFNMEDI----------INAKNND-GRTALHMAITGNVHLELVQL 363
                          I N  D+          ++    D   T LH A     HL +V  
Sbjct: 51  ---------------INNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG-HLSMVVQ 94

Query: 364 LMSAPSINVNVRDNDGMTTLDLLKQRPQSASS----DILIRHLISAG 406
           LM     + ++ D +G + +         A+      I + +LI+ G
Sbjct: 95  LMKY-GADPSLIDGEGCSCI-------HLAAQFGHTSI-VAYLIAKG 132

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.1 bits (178), Expect = 3e-14
 Identities = 44/287 (15%), Positives = 74/287 (25%), Gaps = 101/287 (35%)

Query: 29  PIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARK 88
            I  A   G Y+  REL+    +                                     
Sbjct: 12  DIVKATQYGIYERCRELVEAGYD------------------------------------- 34

Query: 89  LFLECKSKNGKNSLIRAGYGGWL------------------------LYTAASAGDLGFV 124
             +    K     L  A     +                        L+ A   G L  V
Sbjct: 35  --VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV 92

Query: 125 KQLL----DKNPLLVFGEGEYGVTDIFYAAARSKNC-DVFRLIYDFAVSPRFLTAKGGEL 179
            QL+    D +          G + I  AA        +             L AKG ++
Sbjct: 93  VQLMKYGADPS-----LIDGEGCSCIHLAA--QFGHTSIVAY----------LIAKGQDV 135

Query: 180 EEHIEEIPSVYKWEMMNRAVHAAARGGN-LKILKELLENCTDVLTYRDKQGSTILHAAAG 238
           +                  +  AA   + +   + LL     V        +T LH A  
Sbjct: 136 DM-----MDQNGM----TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL 186

Query: 239 RGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
            G   V+  L+   A+   +++ + +G + L +A  R    ++  L 
Sbjct: 187 AGNTTVISLLLEAGAN---VDAQNIKGESALDLAKQRKNVWMINHLQ 230

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  126 bits (318), Expect = 1e-31
 Identities = 58/400 (14%), Positives = 114/400 (28%), Gaps = 92/400 (23%)

Query: 29  PIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKC-RSKVAR 87
            +  A+ +G+    R  L+    +                       D +     + +  
Sbjct: 40  SLLEASYDGYIKRQRNELQHYSLYPNPQGY-------------GNGNDFLGDFNHTNLQI 86

Query: 88  KLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLL----DKNPLLVFGEGEYGV 143
                         L              +AG     + +     +        +  +  
Sbjct: 87  P---TEPEPESPIKLH-----------TEAAGSYAITEPITRESVNII------DPRHNR 126

Query: 144 TDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAA 203
           T + + A+ S       LI   A   +   A G ++                N  +  A 
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEA---KECIAAGADVNA---------MDCDENTPLMLAV 174

Query: 204 RGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI---INSTDH 260
                +++  L++   D  T  +K   + LH AA      ++  ++ S  +   I   D 
Sbjct: 175 LARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233

Query: 261 QGNTPLHIAAYRG---QPAVVEALI-------LASPSMISVKNTSGETFLHSAVSGFQTY 310
            G T L I A+     Q A  + L+           +    +   G T LH A       
Sbjct: 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ----- 288

Query: 311 AFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSI 370
                   + ++K L   +  N     + ++ DG+T + +A      +E+V  L+     
Sbjct: 289 -----VSNMPIVKYLVGEKGSN----KDKQDEDGKTPIMLAAQEG-RIEVVMYLIQQ-GA 337

Query: 371 NVNVRDNDGMTTLDLLKQRPQSASS----DILIRHLISAG 406
           +V   D    T   L       A +    +I +       
Sbjct: 338 SVEAVDATDHTARQL-------AQANNHHNI-VDIFDRCR 369

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  115 bits (290), Expect = 5e-28
 Identities = 35/188 (18%), Positives = 61/188 (32%), Gaps = 22/188 (11%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDII 255
             ++  A+  G +K  +  L                      G G   +      +  I 
Sbjct: 38  QHSLLEASYDGYIKRQRNEL----------QHYSLYPNPQGYGNGNDFLGDFNHTNLQIP 87

Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRL 315
              + +    LH  A  G  A+ E +   S ++I  ++    T LH   S          
Sbjct: 88  TEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRH--NRTVLHWIAS------NSSA 138

Query: 316 DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVR 375
           ++   L+   A   I    D +NA + D  T L +A+       LV  LM A   +  + 
Sbjct: 139 EKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLMLAVLAR-RRRLVAYLMKA-GADPTIY 195

Query: 376 DNDGMTTL 383
           +    + L
Sbjct: 196 NKSERSAL 203

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 90.8 bits (226), Expect = 8e-20
 Identities = 22/165 (13%), Positives = 45/165 (27%), Gaps = 35/165 (21%)

Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
                  L  A+  G ++  ++ +          H    P       G   + +      
Sbjct: 34  ITSSQHSLLEASYDGYIKRQRNEL---------QHYSLYPNPQGYGNGNDFLGDFNHTNL 84

Query: 286 PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGR 345
             + +         LH+  +G              + + +    +    +I        R
Sbjct: 85  -QIPTEPEPESPIKLHTEAAG-----------SYAITEPITRESV----NI--IDPRHNR 126

Query: 346 TALHMAITGNVHLELVQLLMSAPS-------INVNVRDNDGMTTL 383
           T LH   + +   E  + L+   +        +VN  D D  T L
Sbjct: 127 TVLHWIASNS-SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL 170

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 13/129 (10%), Positives = 24/129 (18%), Gaps = 29/129 (22%)

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
            + +       L  A+Y G                                         
Sbjct: 30  NHQSITSSQHSLLEASYDGYIKRQRNE----------LQHYSLYPNPQGYG--------- 70

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374
            +    L     +        I      +    LH    G     + + +    S+N+  
Sbjct: 71  -NGNDFLGDFNHT-----NLQIPTEPEPESPIKLHTEAAG--SYAITEPITRE-SVNII- 120

Query: 375 RDNDGMTTL 383
                 T L
Sbjct: 121 DPRHNRTVL 129

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  122 bits (308), Expect = 2e-31
 Identities = 45/218 (20%), Positives = 84/218 (38%), Gaps = 40/218 (18%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI-I 255
           H A       +++ L+      +   D+ G T  H A        ++ L+   A   + +
Sbjct: 51  HLAVITTLPSVVRLLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 109

Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAFR 313
            + ++ G T LH+A        V+ L+   A    + +K+  G + L  AV         
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS--GRSPLIHAVE------NN 161

Query: 314 RLDRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINV 372
            L   V+ L++  A+         +NA+   G +ALH A      L LV+ L+ +   + 
Sbjct: 162 SLS-MVQLLLQHGAN---------VNAQMYSGSSALHSASGRG-LLPLVRTLVRS-GADS 209

Query: 373 NVRDNDGMTTLDLLKQRPQSASS----DILIRHLISAG 406
           ++++    T L +       A S    DI +R   +  
Sbjct: 210 SLKNCHNDTPLMV-------ARSRRVIDI-LRGKATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  119 bits (300), Expect = 2e-30
 Identities = 47/205 (22%), Positives = 71/205 (34%), Gaps = 52/205 (25%)

Query: 200 HAAARGGNLKILKELLENCT----DVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASF 252
           H A   GNL  +  L+        ++    +    T LH A       VV+ L+   AS 
Sbjct: 14  HIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS- 71

Query: 253 DIINSTDHQGNTPLHIAAYRGQPAVVEALIL---ASPSMISVKNTSGETFLHSAVSGFQT 309
               + D  G T  H+A     P  + AL+         +  +N  G T LH AV+    
Sbjct: 72  --PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN---- 125

Query: 310 YAFRRLDRQVKLMKQLASGQIFNMEDI----------INAKN-NDGRTALHMAITGNVHL 358
                                   ++           I+A +   GR+ L  A+  N  L
Sbjct: 126 ---------------------TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN-SL 163

Query: 359 ELVQLLMSAPSINVNVRDNDGMTTL 383
            +VQLL+     NVN +   G + L
Sbjct: 164 SMVQLLLQH-GANVNAQMYSGSSAL 187

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  117 bits (297), Expect = 4e-30
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 222 LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI----INSTDHQGNTPLHIAAYRGQPAV 277
            T  D+ G T LH A  +G +  V  L+  F      ++  ++   TPLH+A     P+V
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 278 VEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDII 337
           V  L+ A  S     +  G+T  H A             R    ++ L         D +
Sbjct: 62  VRLLVTAGAS-PMALDRHGQTAAHLACEH----------RSPTCLRALLDSAAPGTLD-L 109

Query: 338 NAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRD-NDGMTTL 383
            A+N DG TALH+A+      E VQLL+     +++  D   G + L
Sbjct: 110 EARNYDGLTALHVAVNTE-CQETVQLLLER-GADIDAVDIKSGRSPL 154

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  108 bits (272), Expect = 9e-27
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 51/188 (27%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTY---RDKQGSTILHAAAGRGQVEVVKDLI---AS 251
           A H A    +   L+ LL++          R+  G T LH A      E V+ L+   A 
Sbjct: 82  AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD 141

Query: 252 FDIINSTDHQ-GNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQ 308
              I++ D + G +PL  A      ++V+ L+   A+   ++ +  SG + LHSA     
Sbjct: 142 ---IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN---VNAQMYSGSSALHSASG--- 192

Query: 309 TYAFRRLDRQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHL 358
                                   +  +           + KN    T L +A +    +
Sbjct: 193 ----------------------RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR-VI 229

Query: 359 ELVQLLMS 366
           ++++   +
Sbjct: 230 DILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 75.2 bits (186), Expect = 2e-15
 Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 47/130 (36%)

Query: 254 IINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFR 313
           +    D  G+TPLHIA  +G    V  L       +++    G                 
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRL-------VNLFQQGG----------------- 36

Query: 314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN 373
                                  ++  NN  +T LH+A+       +V+LL++A   +  
Sbjct: 37  ------------RE---------LDIYNNLRQTPLHLAVITT-LPSVVRLLVTA-GASPM 73

Query: 374 VRDNDGMTTL 383
             D  G T  
Sbjct: 74  ALDRHGQTAA 83

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  123 bits (312), Expect = 2e-31
 Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 31/189 (16%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
           A+H A    N+ ++K L+EN  ++    D +G   LHAAA  G +++ + LI   A    
Sbjct: 76  ALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH--- 131

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           + + + +G+TPL IA       +++  +      I       E  +              
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA---------- 181

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374
                +    L SG I             G TALH+A     + E+++LL+ A   +VN+
Sbjct: 182 ----RQW---LNSGHI-----NDVRHAKSGGTALHVAAAKG-YTEVLKLLIQA-RYDVNI 227

Query: 375 RDNDGMTTL 383
           +D DG T L
Sbjct: 228 KDYDGWTPL 236

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  117 bits (296), Expect = 2e-29
 Identities = 50/197 (25%), Positives = 70/197 (35%), Gaps = 43/197 (21%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASF 252
                AA   G+ + +  LLE   D+  Y +  G T LH A     V++VK L+   A+ 
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGAN- 98

Query: 253 DIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTY 310
             IN  D++G  PLH AA  G   + E LI   A    +   N+ G+T L  A       
Sbjct: 99  --INQPDNEGWIPLHAAASCGYLDIAEYLISQGAH---VGAVNSEGDTPLDIAEEE---- 149

Query: 311 AFRRLDRQVKLMKQLASGQIFNMEDI----INAKNNDGRTALHMAITGNVHLELVQLLMS 366
                                 ME++    +N +  D   A           +  Q L S
Sbjct: 150 ---------------------AMEELLQNEVNRQGVDIEAARKEEERIM-LRDARQWLNS 187

Query: 367 APSINVNVRDNDGMTTL 383
              IN       G T L
Sbjct: 188 G-HINDVRHAKSGGTAL 203

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  113 bits (285), Expect = 6e-28
 Identities = 64/331 (19%), Positives = 102/331 (30%), Gaps = 72/331 (21%)

Query: 84  KVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLL----DKNPLLVFGEG 139
                  ++ K    K         G +   A S+GD   V +LL    D N        
Sbjct: 22  TDLEPPVVKRKKTKVKFD------DGAVFLAACSSGDTEEVLRLLERGADIN-----YAN 70

Query: 140 EYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAV 199
             G+T +  A     +        D     +FL   G  + +     P    W      +
Sbjct: 71  VDGLTALHQAC--IDDN------VDMV---KFLVENGANINQ-----PDNEGW----IPL 110

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD 259
           HAAA  G L I + L+     V    + +G T L  A      E++++ +    +     
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGV----- 164

Query: 260 HQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS-GFQTYAFRRLDRQ 318
                              + L     +       SG T LH A + G+           
Sbjct: 165 -DIEAARKEEERIMLRDARQWLNSGHIN-DVRHAKSGGTALHVAAAKGY----------- 211

Query: 319 VKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDND 378
            +++K L    I    D+ N K+ DG T LH A       E  ++L+     ++   +  
Sbjct: 212 TEVLKLL----IQARYDV-NIKDYDGWTPLHAAAHWG-KEEACRILVEN-LCDMEAVNKV 264

Query: 379 GMTTLDLLKQRPQSASSDI---LIRHLISAG 406
           G T  D+       A  DI   L        
Sbjct: 265 GQTAFDV-------ADEDILGYLEELQKKQN 288

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  100 bits (252), Expect = 1e-23
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 47/198 (23%)

Query: 225 RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL- 283
            D +           G    ++  +                   A   G    V  L+  
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRLLER 62

Query: 284 -ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQL----ASGQIFNMEDIIN 338
            A    I+  N  G T LH A            D  V ++K L    A+         IN
Sbjct: 63  GAD---INYANVDGLTALHQACI----------DDNVDMVKFLVENGAN---------IN 100

Query: 339 AKNNDGRTALHMAITGNVHLELVQLLMS--APSINVNVRDNDGMTTLDLLKQRPQSASS- 395
             +N+G   LH A +   +L++ + L+S  A   +V   +++G T LD+       A   
Sbjct: 101 QPDNEGWIPLHAAASCG-YLDIAEYLISQGA---HVGAVNSEGDTPLDI-------AEEE 149

Query: 396 ---DILIRHLISAGGIFG 410
              ++ +++ ++  G+  
Sbjct: 150 AMEEL-LQNEVNRQGVDI 166

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 89.9 bits (224), Expect = 5e-20
 Identities = 36/210 (17%), Positives = 60/210 (28%), Gaps = 83/210 (39%)

Query: 198 AVHAAARGGNLKILKELLE----------------NCTDVLTY----------RDKQGST 231
            +  A      ++L+  +                    D   +            K G T
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT 201

Query: 232 ILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
            LH AA +G  EV+K LI        +N  D+ G TPLH AA+ G+      L+      
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILV------ 252

Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
                       +                                 D+  A N  G+TA 
Sbjct: 253 -----------ENLC-------------------------------DM-EAVNKVGQTAF 269

Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDND 378
            +A   ++   L +L     ++  + +   
Sbjct: 270 DVA-DEDILGYLEELQKKQ-NLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 89.1 bits (222), Expect = 1e-19
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 21/130 (16%)

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +   D +      +  + G    +E  ++       VK   G  FL +  SG        
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKK-TKVKFDDGAVFLAACSSG-------D 52

Query: 315 LDRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN 373
            + +V  L+++ A          IN  N DG TALH A   + ++++V+ L+     N+N
Sbjct: 53  TE-EVLRLLERGAD---------INYANVDGLTALHQACIDD-NVDMVKFLVEN-GANIN 100

Query: 374 VRDNDGMTTL 383
             DN+G   L
Sbjct: 101 QPDNEGWIPL 110

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  119 bits (300), Expect = 4e-31
 Identities = 40/200 (20%), Positives = 72/200 (36%), Gaps = 49/200 (24%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
                      + L + L N      YRD    T L  A   G    +  L+ +FD +  
Sbjct: 11  VEKIKDEKSINQNL-DFLRN------YRDSYNRTPLMVACMLGMENAIDKLVENFDKLED 63

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAFRRL 315
            D +G+T L  A    +  + E L+   ++   ++ K+ SG+T L  ++           
Sbjct: 64  KDIEGSTALIWAVKNNRLGIAEKLLSKGSN---VNTKDFSGKTPLMWSI----------- 109

Query: 316 DRQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLELVQLLM 365
                         IF   ++          +N +N +G T L +A       E+V+ L+
Sbjct: 110 --------------IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG-RSEIVKKLL 154

Query: 366 SAPSINVNVRDNDGMTTLDL 385
                +++ RD  G+T    
Sbjct: 155 EL-GADISARDLTGLTAEAS 173

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  109 bits (274), Expect = 1e-27
 Identities = 35/185 (18%), Positives = 67/185 (36%), Gaps = 48/185 (25%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +  A   G    + +L+EN   +   +D +GST L  A    ++ + + L+   ++   
Sbjct: 38  PLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN--- 93

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAF 312
           +N+ D  G TPL  +   G   +   L+   A+   ++ +N  GET L  A         
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVAS-------- 142

Query: 313 RRLDRQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLELVQ 362
                             +   +I          I+A++  G TA   A       E+++
Sbjct: 143 -----------------KYGRSEIVKKLLELGADISARDLTGLTAEASARIFG-RQEVIK 184

Query: 363 LLMSA 367
           +    
Sbjct: 185 IFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 88.2 bits (220), Expect = 2e-20
 Identities = 29/158 (18%), Positives = 46/158 (29%), Gaps = 57/158 (36%)

Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
           DK G  +      +   + +  L       N  D    TPL +A   G    ++ L+   
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV--- 55

Query: 286 PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGR 345
                          +                                  +   K+ +G 
Sbjct: 56  --------------ENFD-------------------------------KL-EDKDIEGS 69

Query: 346 TALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
           TAL  A+  N  L + + L+S    NVN +D  G T L
Sbjct: 70  TALIWAVKNN-RLGIAEKLLSK-GSNVNTKDFSGKTPL 105

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 62.4 bits (153), Expect = 2e-11
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 23/92 (25%)

Query: 292 KNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMA 351
            + +GE                      K + Q         + + N +++  RT L +A
Sbjct: 4   MDKNGEIVEKIKDE--------------KSINQNL-------DFLRNYRDSYNRTPLMVA 42

Query: 352 ITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
                    +  L+      +  +D +G T L
Sbjct: 43  CMLG-MENAIDKLVEN-FDKLEDKDIEGSTAL 72

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  117 bits (296), Expect = 1e-30
 Identities = 45/215 (20%), Positives = 71/215 (33%), Gaps = 67/215 (31%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +    R GN   ++  L+N  + L   D  G + LH A   G+  VV+ LI   A    
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR--- 64

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           IN  +   +TPLH+AA  G   +V+ L+                  + A           
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLL-----------------QYKA----------- 96

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374
                               DI NA N  G   LH A       ++ + L++     V++
Sbjct: 97  --------------------DI-NAVNEHGNVPLHYACFWG-QDQVAEDLVAN-GALVSI 133

Query: 375 RDNDGMTTLDLLKQRPQSASSD---ILIRHLISAG 406
            +  G   +D        A +    +L       G
Sbjct: 134 CNKYGEMPVDK-------AKAPLRELLRERAEKMG 161

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  102 bits (258), Expect = 1e-25
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 59/191 (30%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +H A R G   +++ L+     +    ++   T LH AA  G  ++V+ L+   A    
Sbjct: 42  PLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD--- 97

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           IN+ +  GN PLH A + GQ  V E L+                  + A           
Sbjct: 98  INAVNEHGNVPLHYACFWGQDQVAEDLV-----------------ANGA----------- 129

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSA-PSIN-V 372
                                + +  N  G   +  A    +   L +       ++N +
Sbjct: 130 --------------------LV-SICNKYGEMPVDKA-KAPLRELLRERAEKMGQNLNRI 167

Query: 373 NVRDNDGMTTL 383
             +D     T 
Sbjct: 168 PYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 84.8 bits (211), Expect = 3e-19
 Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 37/132 (28%)

Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKL 321
               +      G    V   +  + + ++  +  G + LH A                  
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR---------------- 48

Query: 322 MKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLELVQLLMSAPSIN 371
                         +          IN  N    T LH+A +   H ++VQ L+     +
Sbjct: 49  ---------EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG-HRDIVQKLLQY-KAD 97

Query: 372 VNVRDNDGMTTL 383
           +N  +  G   L
Sbjct: 98  INAVNEHGNVPL 109

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 82.9 bits (206), Expect = 1e-18
 Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 29/175 (16%)

Query: 112 LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNC-DVFRLIYDFAVSPR 170
           ++T    G+   V+  LD     +    ++G + + +A    +    V  +         
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWAC--REGRSAVVEM--------- 57

Query: 171 FLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGS 230
            L  +G  +                +  +H AA  G+  I+++LL+   D+    ++ G+
Sbjct: 58  -LIMRGARINV---------MNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGN 106

Query: 231 TILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
             LH A   GQ +V +DL+   A    ++  +  G  P+  A    +  + E   
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKAKAPLRELLRERAE 158

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 341 NNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
           + +    +        +   V+L +     ++N  D+ G + L
Sbjct: 2   SPEFMDDIFTQCREG-NAVAVRLWLDNTENDLNQGDDHGFSPL 43

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  118 bits (298), Expect = 2e-30
 Identities = 41/189 (21%), Positives = 66/189 (34%), Gaps = 23/189 (12%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
            +  AA  G L+++++ ++   D  +  +++G T LH A       +V  LI +   +NS
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGANVNS 82

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTS-GETFLHSAVSGFQTYAFRR 314
            D  G TPLH AA      +  AL+   A+   I     S G T         + Y    
Sbjct: 83  PDSHGWTPLHCAASCNDTVICMALVQHGAA---IFATTLSDGATAFEKCDPYREGY---- 135

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374
                     LA       +  +   N+    AL          + +       S+ V  
Sbjct: 136 ----ADCATYLAD----VEQS-MGLMNSGAVYALWDYSAE--FGDELSFREGE-SVTVLR 183

Query: 375 RDNDGMTTL 383
           RD    T  
Sbjct: 184 RDGPEETDW 192

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 96.6 bits (241), Expect = 8e-23
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 25/160 (15%)

Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASP 286
              +L  AA  G++EVV+  +   +  +  + +G T LH A      ++V+ LI   A+ 
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN- 79

Query: 287 SMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVK-LMKQLASGQIFNMEDIINAKN-NDG 344
             ++  ++ G T LH A S   T            L++  A+         I A   +DG
Sbjct: 80  --VNSPDSHGWTPLHCAASCNDTVI-------CMALVQHGAA---------IFATTLSDG 121

Query: 345 RTALHMA-ITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
            TA          + +    L      ++ + ++  +  L
Sbjct: 122 ATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 90.0 bits (224), Expect = 1e-20
 Identities = 31/181 (17%), Positives = 50/181 (27%), Gaps = 28/181 (15%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS-FDIIN 256
           A+H A  G N  I+  L+    +V    D  G T LH AA      +   L+     I  
Sbjct: 57  ALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115

Query: 257 STDHQGNTPLHIAA--YRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAF 312
           +T   G T          G       L     S   + + N+     L    + F     
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSAEFGD--- 169

Query: 313 RRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQ--LLMSAPSI 370
                ++   +    G+       +  ++    T    A         V        P +
Sbjct: 170 -----ELSFRE----GESVT----VLRRDGPEETDWWWAALHG-QEGYVPRNYFGLFPRV 215

Query: 371 N 371
            
Sbjct: 216 K 216

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 27/142 (19%), Positives = 41/142 (28%), Gaps = 54/142 (38%)

Query: 245 VKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH 301
           ++ ++    S              L  AA  G+  VV+  +                   
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAV-----------------KE 43

Query: 302 SAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELV 361
                                            D  +  N +G TALH AI G  +  +V
Sbjct: 44  MN-------------------------------DP-SQPNEEGITALHNAICGA-NYSIV 70

Query: 362 QLLMSAPSINVNVRDNDGMTTL 383
             L++A   NVN  D+ G T L
Sbjct: 71  DFLITA-GANVNSPDSHGWTPL 91

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 41/255 (16%), Positives = 62/255 (24%), Gaps = 70/255 (27%)

Query: 88  KLFLECK-SKNGKNSLIRAGYGGW-LLYTAASAGDLGFVKQLL----DKNPLLVFGEGEY 141
           +  L    S        RA      LL  AA  G+L  V+Q +    D +        E 
Sbjct: 2   RSVLRKAGSPRKAR---RARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-----QPNEE 53

Query: 142 GVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHA 201
           G+T +  A             Y       FL   G  +       P  + W      +H 
Sbjct: 54  GITALHNAI--CGAN------YSIV---DFLITAGANVNS-----PDSHGW----TPLHC 93

Query: 202 AARGGNLKILKELL-------------------------ENCTDVLTY----------RD 226
           AA   +  I   L+                         E   D  TY           +
Sbjct: 94  AASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN 153

Query: 227 KQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASP 286
                 L   +     + +         +   D    T    AA  GQ   V        
Sbjct: 154 SGAVYALWDYS-AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLF 212

Query: 287 SMISVKNTSGETFLH 301
             +  + +  +   H
Sbjct: 213 PRVKPQRSKVKHHHH 227

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  120 bits (304), Expect = 5e-30
 Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 49/211 (23%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDIIN 256
           H A   G+ ++ + LL++   V    D    T LH AA + +VEV   L+   A      
Sbjct: 96  HNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD---PT 151

Query: 257 STDHQGNTPLHIAAYRGQPAVVE------ALILASPSM--------------ISVKNTSG 296
             +  G + + +A        +       +L+ A+                    +  S 
Sbjct: 152 LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211

Query: 297 ETFLHSAVSGFQTYAFRRLDRQVKLMKQL----ASGQIFNMEDIINAKNNDGRTALHMAI 352
           ET LH A             ++ ++ + L    A+         +N KN D  T LH+A 
Sbjct: 212 ETALHCA-------VASLHPKRKQVAELLLRKGAN---------VNEKNKDFMTPLHVAA 255

Query: 353 TGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
               H +++++L       +N  D+ G T L
Sbjct: 256 ERA-HNDVMEVLHKH-GAKMNALDSLGQTAL 284

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  119 bits (301), Expect = 1e-29
 Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 23/200 (11%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +H AA    ++I++ LL++  DV   +DK G   LH A   G  EV + L+   A    
Sbjct: 61  PLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGAC--- 116

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAF 312
           +N+ D    TPLH AA + +  V   L+   A     ++ N  G++ +  A +       
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD---PTLVNCHGKSAVDMAPTPELRERL 173

Query: 313 RRLDRQVKLMKQLASGQIFNMEDII------NAKNNDGRTALHMAITGNVH---LELVQL 363
               +   L++      +  ++  +        +     TALH A   ++H    ++ +L
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCA-VASLHPKRKQVAEL 232

Query: 364 LMSAPSINVNVRDNDGMTTL 383
           L+     NVN ++ D MT L
Sbjct: 233 LLRK-GANVNEKNKDFMTPL 251

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  112 bits (284), Expect = 2e-27
 Identities = 58/321 (18%), Positives = 99/321 (30%), Gaps = 110/321 (34%)

Query: 112 LYTAASAGDLGFVKQLL----DKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV 167
           L+ A S G     + LL      N         +  T   + AA     +V  L      
Sbjct: 95  LHNACSYGHYEVTELLLKHGACVN-----AMDLWQFT-PLHEAASKNRVEVCSL------ 142

Query: 168 SPRFLTAKGGELEE----------------HIEEIPSVYKWEMMNRAVHAAARGGNLKIL 211
               L + G +                     E       +E    ++  AAR  +L  +
Sbjct: 143 ----LLSHGADPTLVNCHGKSAVDMAPTPELRE----RLTYEFKGHSLLQAAREADLAKV 194

Query: 212 KELLENCTDVLTYRDKQGSTILHAAAGRG---QVEVVKDLI---ASFDIINSTDHQGNTP 265
           K+ L         + +   T LH A       + +V + L+   A+   +N  +    TP
Sbjct: 195 KKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVAELLLRKGAN---VNEKNKDFMTP 250

Query: 266 LHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQL 325
           LH+AA R    V+E L                   H A                      
Sbjct: 251 LHVAAERAHNDVMEVLH-----------------KHGA---------------------- 271

Query: 326 ASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
                     + NA ++ G+TALH A     HL+  +LL+S    + ++    G T   +
Sbjct: 272 ---------KM-NALDSLGQTALHRAALAG-HLQTCRLLLSY-GSDPSIISLQGFTAAQM 319

Query: 386 LKQRPQSASSDILIRHLISAG 406
                    ++  ++ ++S  
Sbjct: 320 --------GNEA-VQQILSES 331

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  111 bits (281), Expect = 6e-27
 Identities = 42/189 (22%), Positives = 66/189 (34%), Gaps = 58/189 (30%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDIIN 256
            AA  G   K++  L     +     D + ST LH AAG  +V +V+ L+   A    ++
Sbjct: 30  EAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD---VH 85

Query: 257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD 316
           + D  G  PLH A   G   V E L+                  H A             
Sbjct: 86  AKDKGGLVPLHNACSYGHYEVTELLL-----------------KHGA------------- 115

Query: 317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRD 376
                              + NA +    T LH A + N  +E+  LL+S    +  + +
Sbjct: 116 ------------------CV-NAMDLWQFTPLHEAASKN-RVEVCSLLLSH-GADPTLVN 154

Query: 377 NDGMTTLDL 385
             G + +D+
Sbjct: 155 CHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 97.6 bits (244), Expect = 4e-22
 Identities = 59/366 (16%), Positives = 99/366 (27%), Gaps = 135/366 (36%)

Query: 32  WAAANGHYDLVRELLR----IDGNHLIKLTSLR---RIRRLETVWDDEEQFDDVAKCRSK 84
            A + GHY++   LL+    ++   L + T L       R+E                  
Sbjct: 97  NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVC---------------- 140

Query: 85  VARKLFLE------CKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGE 138
               L L         + +GK+++            A +      +      + LL    
Sbjct: 141 ---SLLLSHGADPTLVNCHGKSAV----------DMAPTPELRERLTYEFKGHSLLQ--- 184

Query: 139 GEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRA 198
                      AAR  +    +             A      +  +             A
Sbjct: 185 -----------AAREADLAKVKK----------TLALEIINFKQPQS---------HETA 214

Query: 199 VHAAARGG---NLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDII 255
           +H A         ++ + LL    +V   ++K   T LH AA R   +V++ L      +
Sbjct: 215 LHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273

Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRL 315
           N+ D  G T LH AA  G       L+                  + +            
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLL-----------------SYGS------------ 304

Query: 316 DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVR 375
                              D  +  +  G TA  M        E VQ ++S  S  +   
Sbjct: 305 -------------------DP-SIISLQGFTAAQMGN------EAVQQILSE-STPMRTS 337

Query: 376 DNDGMT 381
           D D   
Sbjct: 338 DVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 96.4 bits (241), Expect = 8e-22
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 53/180 (29%)

Query: 205 GGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI-INSTDHQGN 263
           G   K   +L +     +   + +   +L AA    + +++  L    ++  +++D + +
Sbjct: 1   GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLT-PLNVNCHASDGRKS 59

Query: 264 TPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMK 323
           TPLH+AA   +  +V+ L+                  H A                    
Sbjct: 60  TPLHLAAGYNRVRIVQLLL-----------------QHGA-------------------- 82

Query: 324 QLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
                      D+ +AK+  G   LH A +   H E+ +LL+      VN  D    T L
Sbjct: 83  -----------DV-HAKDKGGLVPLHNACSYG-HYEVTELLLKH-GACVNAMDLWQFTPL 128

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 57.5 bits (140), Expect = 5e-09
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
           A+H AA  G+L+  + LL   +D  +    QG T           E V+ +++    + +
Sbjct: 283 ALHRAALAGHLQTCRLLLSYGSDP-SIISLQGFTAAQMGN-----EAVQQILSESTPMRT 336

Query: 258 TDHQGNTPLHIAAYRG 273
           +D   +  L  A+  G
Sbjct: 337 SD--VDYRLLEASKAG 350

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  119 bits (300), Expect = 5e-30
 Identities = 49/215 (22%), Positives = 76/215 (35%), Gaps = 38/215 (17%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +H A  GG+L  +K LL++   V         T L  A   G  + V  L+   AS   
Sbjct: 95  PLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS--- 150

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +        +P+H AA RG    V +LI    + I  K +   T L+ A    Q      
Sbjct: 151 VQPESD-LASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRAC--- 205

Query: 315 LDRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN 373
               VK L++  A          +N +     + LH  +      EL  LLM     +  
Sbjct: 206 ----VKKLLESGAD---------VN-QGKGQDSPLHAVVRTA-SEELACLLMDF-GADTQ 249

Query: 374 VRDNDGMTTLDLLKQRPQSAS--SDILIRHLISAG 406
            ++ +G   ++L           S +    L   G
Sbjct: 250 AKNAEGKRPVEL-------VPPESPLAQLFLEREG 277

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  117 bits (296), Expect = 2e-29
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 35/193 (18%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +H AA  G+   L+ L+     V         + LH A   G +  VK L+   A    
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQ--- 117

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAF 312
           +N      +TPL  A   G    V  L+   AS        +   + +H A       A 
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ----PESDLASPIHEA-------AR 166

Query: 313 R-RLDRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSI 370
           R  ++  V  L+    +         I+ K +   T L++A         V+ L+ +   
Sbjct: 167 RGHVEC-VNSLIAYGGN---------IDHKISHLGTPLYLACENQ-QRACVKKLLES-GA 214

Query: 371 NVNVRDNDGMTTL 383
           +VN +     + L
Sbjct: 215 DVN-QGKGQDSPL 226

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  104 bits (263), Expect = 3e-25
 Identities = 56/352 (15%), Positives = 109/352 (30%), Gaps = 85/352 (24%)

Query: 33  AAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLE 92
            +++ H+     L+    +             + ++   +   D       +    + L 
Sbjct: 2   GSSHHHHHHSSGLVPRGSH-------------MASMDGKQGGMDGSKPAGPRDFPGIRLL 48

Query: 93  CKSKNGKNSLIRAGYGGW-LLYTAASAGDLGFVKQLLDKNPLLVFG-----EGEYGVTDI 146
                  N L+      W  ++ AA  G    ++ L+ +      G          V+ +
Sbjct: 49  ------SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ------GWAVNIITADHVSPL 96

Query: 147 FYAAAR-SKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARG 205
             A      +C          V  + L   G ++        +          +  A   
Sbjct: 97  HEACLGGHLSC----------V--KILLKHGAQVNG-----VTADWH----TPLFNACVS 135

Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQG 262
           G+   +  LL++   V    +   ++ +H AA RG VE V  LI    +   I+      
Sbjct: 136 GSWDCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNSLIAYGGN---IDHKISHL 190

Query: 263 NTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVK 320
            TPL++A    Q A V+ L+   A  +    +    ++ LH+ V           +    
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVN----QGKGQDSPLHAVVR------TASEEL-AC 239

Query: 321 -LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSIN 371
            LM   A            AKN +G+  + +       L  + L     S+ 
Sbjct: 240 LLMDFGAD---------TQAKNAEGKRPVELV-PPESPLAQLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  104 bits (261), Expect = 6e-25
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 33/189 (17%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
                   G   +   L+ +             + +H AA  G    +++LI+    +N 
Sbjct: 36  PAGPRDFPGIRLLSNPLMGDAVS--------DWSPMHEAAIHGHQLSLRNLISQGWAVNI 87

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSG--FQTYAFRRL 315
                 +PLH A   G  + V+ L+      ++       T L +A     +        
Sbjct: 88  ITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDC------ 140

Query: 316 DRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374
              V  L++  AS         +  ++ D  + +H A     H+E V  L++    N++ 
Sbjct: 141 ---VNLLLQHGAS---------VQPES-DLASPIHEAARRG-HVECVNSLIAY-GGNIDH 185

Query: 375 RDNDGMTTL 383
           + +   T L
Sbjct: 186 KISHLGTPL 194

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 92.9 bits (232), Expect = 4e-21
 Identities = 31/189 (16%), Positives = 59/189 (31%), Gaps = 36/189 (19%)

Query: 202 AARGGNLKILKELLENCTDV----LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
            +   +      L+   + +           GS         G       L+++  + ++
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGDA 56

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSG--FQTYAFRRL 315
                 +P+H AA  G    +  LI    + +++      + LH A  G           
Sbjct: 57  VS--DWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSC------ 107

Query: 316 DRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374
              VK L+K  A          +N    D  T L  A       + V LL+     +V  
Sbjct: 108 ---VKILLKHGAQ---------VNGVTADWHTPLFNACVSG-SWDCVNLLLQH-GASVQ- 152

Query: 375 RDNDGMTTL 383
            ++D  + +
Sbjct: 153 PESDLASPI 161

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 13/120 (10%), Positives = 30/120 (25%), Gaps = 28/120 (23%)

Query: 268 IAAYRGQPAVVEALIL--ASPSMISVKNTS--GETFLHSAVSGFQTYAFRRLDRQVKLMK 323
           + +          L+   +  + +  K     G                      ++L+ 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDF-----------PGIRLLS 49

Query: 324 QLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
                                 + +H A     H   ++ L+S     VN+   D ++ L
Sbjct: 50  NPL-----------MGDAVSDWSPMHEAAIHG-HQLSLRNLISQ-GWAVNIITADHVSPL 96

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  114 bits (287), Expect = 1e-29
 Identities = 42/216 (19%), Positives = 72/216 (33%), Gaps = 75/216 (34%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +  AA  G+++ ++ LL          ++ G T L      G   +  +L+   AS   
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS--- 60

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
            N  D  G +P+H AA  G    ++ L+                  H A           
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLV-----------------EHGA----------- 92

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS-APSINVN 373
                               D+ N  +  G   +H+A+    H  +V  L + +   +++
Sbjct: 93  --------------------DV-NVPDGTGALPIHLAVQEG-HTAVVSFLAAES---DLH 127

Query: 374 VRDNDGMTTLDLLKQRPQSASS-------DILIRHL 402
            RD  G+T L+L       A         DIL  H+
Sbjct: 128 RRDARGLTPLEL-------ALQRGAQDLVDILQGHM 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 90.5 bits (226), Expect = 2e-21
 Identities = 46/175 (26%), Positives = 68/175 (38%), Gaps = 23/175 (13%)

Query: 108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV 167
            G  L  AA+ GD+  V++LL +  +       +G T +        +  +         
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM--FGSTAIALE------ 53

Query: 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDK 227
               L  +G              +       VH AAR G L  LK L+E+  DV    D 
Sbjct: 54  ----LLKQGASPNV---------QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-PDG 99

Query: 228 QGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
            G+  +H A   G   VV  L A  D+ +  D +G TPL +A  RG   +V+ L 
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLAAESDL-HRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 88.2 bits (220), Expect = 1e-20
 Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 20/123 (16%)

Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVK- 320
               L  AA RG    V  L+          N  G+T L   + G               
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-------STA-IALE 53

Query: 321 LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGM 380
           L+KQ AS          N ++  G + +H A      L+ +++L+     +VNV D  G 
Sbjct: 54  LLKQGAS---------PNVQDTSGTSPVHDAARTG-FLDTLKVLVEH-GADVNVPDGTGA 102

Query: 381 TTL 383
             +
Sbjct: 103 LPI 105

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 12/66 (18%)

Query: 344 GRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASS---DILIR 400
               L  A      ++ V+ L+    ++ +  +  G T L       Q        I   
Sbjct: 2   AGDRLSGAAARG-DVQEVRRLLHRELVHPDALNRFGKTAL-------QVMMFGSTAI-AL 52

Query: 401 HLISAG 406
            L+  G
Sbjct: 53  ELLKQG 58

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  113 bits (287), Expect = 1e-29
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 48/186 (25%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASF 252
            + +  AAR G    ++ L+ N  DV    D  G T LH AA  G +E+V+ L+   A  
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD- 72

Query: 253 DIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTY 310
             +N+ DH G TPL +AA  G   +VE L+   A    ++  +  G T LH A       
Sbjct: 73  --VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAM----- 122

Query: 311 AFRRLDRQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLEL 360
                               F   +I          +NA++  G+TA  ++I    + +L
Sbjct: 123 --------------------FGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG-NEDL 161

Query: 361 VQLLMS 366
            ++L  
Sbjct: 162 AEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 96.3 bits (241), Expect = 3e-23
 Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 51/164 (31%)

Query: 220 DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVE 279
               +        L  AA  G+ + V+ L+A+   +N+ D  G TPLH+AA+ G   +VE
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE 64

Query: 280 ALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINA 339
            L+                  + A                               D+ NA
Sbjct: 65  VLL-----------------KNGA-------------------------------DV-NA 75

Query: 340 KNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
            ++ G T L +A     HLE+V++L+     +VN  D +G T L
Sbjct: 76  VDHAGMTPLRLAALFG-HLEIVEVLLKN-GADVNANDMEGHTPL 117

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 77.0 bits (191), Expect = 1e-16
 Identities = 48/194 (24%), Positives = 72/194 (37%), Gaps = 39/194 (20%)

Query: 98  GKNSLIRAGYGGW-LLYTAASAGDLGFVKQLL----DKNPLLVFGEGEYGVTDIFYAAAR 152
           G +     G      L  AA AG    V+ L+    D N      E   G T +  AA  
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVN-----AEDASGWTPLHLAA-- 55

Query: 153 SKNC-DVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKIL 211
                ++  +          L   G ++                   +  AA  G+L+I+
Sbjct: 56  FNGHLEIVEV----------LLKNGADVNA---------VDHAGMTPLRLAALFGHLEIV 96

Query: 212 KELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHI 268
           + LL+N  DV    D +G T LH AA  G +E+V+ L+   A    +N+ D  G T   I
Sbjct: 97  EVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDI 152

Query: 269 AAYRGQPAVVEALI 282
           +   G   + E L 
Sbjct: 153 SIDNGNEDLAEILQ 166

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  114 bits (287), Expect = 2e-29
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 29/195 (14%)

Query: 197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGR----GQVEVVKDLI--- 249
           R V AAA  G  +   EL E   +         S IL+          + ++   LI   
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 250 ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM-----ISVKNTSGETFLHSAV 304
           A    I S   +G T        G   +     L    +     I+      +  +   +
Sbjct: 66  AD---IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122

Query: 305 S-GFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQL 363
              F          ++   +             +  K+  G TAL            +++
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQ---------LLIKDKWGLTALEFVKRCQ-KPIALKM 172

Query: 364 LMSAPSINVNVRDND 378
           +        N+++N 
Sbjct: 173 MEDYIK-KYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 94.4 bits (235), Expect = 2e-22
 Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 24/182 (13%)

Query: 231 TILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYR----GQPAVVEALIL--A 284
             + AAA  G  E   +L              +  L+          +  +   LI   A
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 285 SPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDG 344
               I  +   G T       G         +     +++ A        DI  A     
Sbjct: 67  D---IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA--------DI-TALYKPY 114

Query: 345 RTALHMAITGN-----VHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILI 399
           +  +   I          + L +L+ S   + + ++D  G+T L+ +K+  +  +  ++ 
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174

Query: 400 RH 401
            +
Sbjct: 175 DY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.5 bits (186), Expect = 7e-16
 Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 32/184 (17%)

Query: 112 LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRF 171
           +  AA  G      +L +K       +     ++I Y   R+ N +    I        F
Sbjct: 10  VSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKIS------MF 60

Query: 172 LTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKI------LKELLENCTDVLTYR 225
           L  KG +++          + +          +GG   I       K  LE   D+ T  
Sbjct: 61  LINKGADIKS---------RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TAL 110

Query: 226 DKQGSTILHAAAGRGQVE------VVKDLIASFDI-INSTDHQGNTPLHIAAYRGQPAVV 278
            K    ++        V+      + K + +   + +   D  G T L       +P  +
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170

Query: 279 EALI 282
           + + 
Sbjct: 171 KMME 174

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.5 bits (155), Expect = 8e-12
 Identities = 14/131 (10%), Positives = 32/131 (24%), Gaps = 27/131 (20%)

Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKL 321
               +  AA  G       L          ++      L+  +           + + K+
Sbjct: 6   EYRTVSAAAMLGTYEDFLELF--EKGYEDKESVLKSNILYDVLRN------NNDEARYKI 57

Query: 322 MKQL----ASGQIFNMEDIINAKNNDGRTALHMAITGNVH-----LELVQLLMSAPSINV 372
              L    A          I ++  +G T       G  +      EL ++ +     ++
Sbjct: 58  SMFLINKGAD---------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADI 107

Query: 373 NVRDNDGMTTL 383
                     +
Sbjct: 108 TALYKPYKIVV 118

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 31/234 (13%), Positives = 54/234 (23%), Gaps = 79/234 (33%)

Query: 28  SPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVAR 87
             +  AA  G Y+   EL                           E+  +          
Sbjct: 8   RTVSAAAMLGTYEDFLELF--------------------------EKGYEDK-------- 33

Query: 88  KLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFG-----EGEYG 142
                 +S    N L         L              L++K      G       + G
Sbjct: 34  ------ESVLKSNILYDV------LRNNNDEARYKISMFLINK------GADIKSRTKEG 75

Query: 143 VTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAA 202
            T  F       N      I       +    KG ++        ++YK   +   V   
Sbjct: 76  TTLFFPLFQGGGND-----ITGTTELCKIFLEKGADIT-------ALYKPYKI--VVFKN 121

Query: 203 ARGGNLKILKE-------LLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI 249
                +   +          ++   +L  +DK G T L       +   +K + 
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLI-KDKWGLTALEFVKRCQKPIALKMME 174

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  110 bits (278), Expect = 1e-27
 Identities = 47/225 (20%), Positives = 73/225 (32%), Gaps = 64/225 (28%)

Query: 198 AVHAAARGGNLKILKELL-ENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA-----S 251
            +  AA+  +++ L +LL     +V   R   G T LH AA    +E    L+       
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 252 FDIINSTDHQGNTPLHIAAYRGQPAVVEALI------------LASPSMISVKNTSGETF 299
           F+ + S  ++G T LHIA       +V AL+                         GE  
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124

Query: 300 LHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALH 349
           L  A                              E+I          I A+++ G T LH
Sbjct: 125 LSFAAC-------------------------VGSEEIVRLLIEHGADIRAQDSLGNTVLH 159

Query: 350 MAITGN---VHLELVQLLMSAPSINVN------VRDNDGMTTLDL 385
           + I         ++  LL+S      +      V +N G+T   L
Sbjct: 160 ILILQPNKTFACQMYNLLLSY-DGGDHLKSLELVPNNQGLTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 80.3 bits (199), Expect = 3e-17
 Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 47/157 (29%)

Query: 229 GSTILHAAAGRGQVEVVKDLIASFDI-INSTDHQGNTPLHIAAYRGQPAVVEALILASPS 287
             + L  AA    V+ +  L+      ++     G T LHIAA          L+ A+P 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 288 MISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTA 347
           ++                                             + + ++  +G+TA
Sbjct: 63  LVF--------------------------------------------EPMTSELYEGQTA 78

Query: 348 LHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLD 384
           LH+A+    ++ LV+ L++    +V+ R    +    
Sbjct: 79  LHIAVINQ-NVNLVRALLAR-GASVSARATGSVFHYR 113

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  112 bits (283), Expect = 4e-29
 Identities = 41/175 (23%), Positives = 64/175 (36%), Gaps = 47/175 (26%)

Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDI-INSTDHQGNTPLHIAAYRGQPAVVEALIL- 283
           + +    L  AA  G VE VK L     +     + + +TPLH AA   + +VVE L+  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 284 -ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI------ 336
            A    +  K+  G   LH+A S                         +   ++      
Sbjct: 65  GAD---VHAKDKGGLVPLHNACS-------------------------YGHYEVAELLVK 96

Query: 337 ----INAKNNDGRTALHMAITGNVHLELVQLLMS--APSINVNVRDNDGMTTLDL 385
               +N  +    T LH A       E+ +LL+   A   +   ++ DG T LDL
Sbjct: 97  HGAVVNVADLWKFTPLHEAAAKG-KYEICKLLLQHGA---DPTKKNRDGNTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 93.2 bits (233), Expect = 2e-22
 Identities = 40/172 (23%), Positives = 59/172 (34%), Gaps = 58/172 (33%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +H AA    + +++ LL++  DV   +DK G   LH A   G  EV + L+   A    
Sbjct: 45  PLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVKHGAV--- 100

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N  D    TPLH AA +G+  + + L+                  H A           
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLL-----------------QHGA----------- 132

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS 366
                               D    KN DG T L +   G    ++  LL  
Sbjct: 133 --------------------DP-TKKNRDGNTPLDLVKDG--DTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 56.2 bits (137), Expect = 1e-09
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 340 KNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
            N++    L  A      +E V+ L +  S+N    +    T L
Sbjct: 4   GNSEADRQLLEAAKAG-DVETVKKLCTVQSVNCRDIEGRQSTPL 46

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  116 bits (292), Expect = 5e-29
 Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 30/187 (16%)

Query: 201 AAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDH 260
           +       K LK  L +  D     D  G +  + A     V +V  L+ +  + N  + 
Sbjct: 5   SRINTWKSKQLKSFLSSK-DT-FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE- 61

Query: 261 QGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSG--FQTYAFRRLDRQ 318
               PLH AA      +V+ L+ +     S  +  G T L+ AV     QT         
Sbjct: 62  -NEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQT--------- 110

Query: 319 VK-LMKQLASGQIFNMEDIINAKNNDG-RTALHMAITGNVHLELVQLLMSAPSINVNVRD 376
           VK  +K+            +      G +T+ + A+  N  + +V   +S   I      
Sbjct: 111 VKLFVKKNWR---------LMFYGKTGWKTSFYHAVMLN-DVSIVSYFLS--EIPSTFDL 158

Query: 377 NDGMTTL 383
              ++ +
Sbjct: 159 AILLSCI 165

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  112 bits (283), Expect = 7e-28
 Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 29/190 (15%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
           A + A    N++++  LL            +    LH AA     ++VK L+        
Sbjct: 34  ASYYAIADNNVRLVCTLLNAGALK---NLLENEFPLHQAATLEDTKIVKILLFSGLD--- 87

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSG-ETFLHSAVSGFQTYAFR 313
            +  D +GNT L+ A   G    V+  +  +   +     +G +T  + AV         
Sbjct: 88  DSQFDDKGNTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVML------- 139

Query: 314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN 373
                V ++    S      E           + +H+ I    H++++ LL+     + N
Sbjct: 140 ---NDVSIVSYFLS------EIPSTFDLAILLSCIHITIKNG-HVDMMILLLDY-MTSTN 188

Query: 374 VRDNDGMTTL 383
             ++      
Sbjct: 189 TNNSLLFIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  104 bits (261), Expect = 6e-25
 Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 48/197 (24%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +H AA   + KI+K LL +  D  +  D +G+T L+ A   G ++ VK  +        
Sbjct: 65  PLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR--- 120

Query: 255 INSTDHQG-NTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFR 313
           +      G  T  + A      ++V   +   P   +       + +H  +         
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP--STFDLAILLSCIHITIK-------- 170

Query: 314 RLDRQVKLMKQLASGQIFNMEDI----------INAKNNDGRT-ALHMAITGNVHLELVQ 362
                                D+           N  N+      + +AI     +E++Q
Sbjct: 171 -----------------NGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK-DIEMLQ 212

Query: 363 LLMSAPSINVNVRDNDG 379
            L     IN+   + + 
Sbjct: 213 ALFKY-DINIYSANLEN 228

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  102 bits (256), Expect = 3e-24
 Identities = 21/188 (11%), Positives = 61/188 (32%), Gaps = 29/188 (15%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQG-STILHAAAGRGQVEVVKDLIASFDIIN 256
           A++ A   GN++ +K  ++    +  +  K G  T  + A     V +V   ++      
Sbjct: 98  ALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF 156

Query: 257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGET-FLHSAVSGFQTYAFRRL 315
                  + +HI    G   ++  L+    S  +  N+      +  A+           
Sbjct: 157 D-LAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDN--------- 205

Query: 316 DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVR 375
            + +++++ L               + +  +A    +  +   E+ ++++    +     
Sbjct: 206 -KDIEMLQALFK------------YDINIYSANLENVLLD-DAEIAKMIIEK-HVEYKSD 250

Query: 376 DNDGMTTL 383
                  +
Sbjct: 251 SYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  101 bits (254), Expect = 6e-24
 Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 25/155 (16%)

Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
           G  +        + + +K  ++S D     D  G++  + A       +V  L+ A    
Sbjct: 1   GMDLSRINTW--KSKQLKSFLSSKDT-FKADVHGHSASYYAIADNNVRLVCTLLNAG--- 54

Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVK-LMKQLASGQIFNMEDIINAKNNDGRTA 347
                   E  LH A       A     + VK L+               +  ++ G TA
Sbjct: 55  ALKNLLENEFPLHQA-------ATLEDTKIVKILLFSGLD---------DSQFDDKGNTA 98

Query: 348 LHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTT 382
           L+ A+    +++ V+L +      +      G  T
Sbjct: 99  LYYAVDSG-NMQTVKLFVKKNW-RLMFYGKTGWKT 131

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 9/110 (8%), Positives = 30/110 (27%), Gaps = 16/110 (14%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGST-ILHAAAGRGQVEVVKDLIASFDIIN 256
            +H   + G++ ++  LL+  T      +       +  A     +E+++ L        
Sbjct: 164 CIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFK------ 216

Query: 257 STDHQG---NTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
                     +            + + +I          + + +  +   
Sbjct: 217 ----YDINIYSANLENVLLDDAEIAKMIIEKHVE-YKSDSYTKDLDIVKN 261

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 53.7 bits (130), Expect = 6e-08
 Identities = 7/86 (8%), Positives = 23/86 (26%), Gaps = 14/86 (16%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDIIN 256
             A    ++++L+ L +   ++         +           E+ K +I          
Sbjct: 200 KLAIDNKDIEMLQALFKYDINI--------YSANLENVLLDDAEIAKMIIEKHVE---YK 248

Query: 257 STDHQGNTPLHIAAYRGQPAVVEALI 282
           S  +  +  +       +       +
Sbjct: 249 SDSYTKDLDIVKNNKLDEIISKNKEL 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  116 bits (292), Expect = 5e-29
 Identities = 44/192 (22%), Positives = 70/192 (36%), Gaps = 13/192 (6%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTY--RDKQGSTILHAAAGRGQVEVVKDLI---ASF 252
           A+H A    +   L  LL           ++  G T LH AA  G+   V+ L    A  
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG- 70

Query: 253 DIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAF 312
             +   +  G+T LH+A           L+   PS      +          +   ++A 
Sbjct: 71  --VLVAERGGHTALHLACRVRAHTCACVLLQPRPS-HPRDASDTYLTQSQDCTPDTSHAP 127

Query: 313 RRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINV 372
             +D Q     +            + A+N DG T LH+A+      E+V+LL  A   ++
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHK-DAEMVRLLRDA-GADL 184

Query: 373 NVRDND-GMTTL 383
           N  +   G T L
Sbjct: 185 NKPEPTCGRTPL 196

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  109 bits (276), Expect = 6e-27
 Identities = 34/211 (16%), Positives = 56/211 (26%), Gaps = 50/211 (23%)

Query: 198 AVHAAARGGNLKILKELLENCTDVL-------------TYRDKQGSTILHAAAGRGQVEV 244
           A+H A R         LL+                      D   +     +    + E 
Sbjct: 81  ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

Query: 245 VKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAV 304
                     + + ++ G+TPLH+A       +V  L  A   +   + T G T LH AV
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200

Query: 305 SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALHMAITG 354
                                          +            A+   GRT L  A+  
Sbjct: 201 E-------------------------AQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235

Query: 355 NVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
             +  L +LL +           D ++    
Sbjct: 236 P-NPILARLLRAH-GAPEPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  102 bits (256), Expect = 3e-24
 Identities = 40/210 (19%), Positives = 63/210 (30%), Gaps = 52/210 (24%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
           A+H AA  G    +++L      VL   ++ G T LH A           L+    S   
Sbjct: 48  ALHLAAILGEASTVEKLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106

Query: 255 ----------INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAV 304
                      + T    + P  + +        E         +  +N  G T LH AV
Sbjct: 107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166

Query: 305 SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI----------INAKNND-GRTALHMAIT 353
                                    I    ++          +N      GRT LH+A+ 
Sbjct: 167 -------------------------IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE 201

Query: 354 GNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
                 +++LL+ A   +   R   G T L
Sbjct: 202 AQ-AASVLELLLKA-GADPTARMYGGRTPL 229

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 99.2 bits (248), Expect = 3e-23
 Identities = 31/198 (15%), Positives = 49/198 (24%), Gaps = 62/198 (31%)

Query: 221 VLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAV 277
           V  Y  + G T LH A        +  L+   A  + ++  +  G T LH+AA  G+ + 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 278 VEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDII 337
           VE L                     A                                + 
Sbjct: 61  VEKLY-----------------AAGA-------------------------------GV- 71

Query: 338 NAKNNDGRTALHMAITGNVHLELVQLLMSA-PSINVNVRDNDGMTTLDLLKQRPQSA--- 393
                 G TALH+A           +L+   PS   +  D     + D       +    
Sbjct: 72  LVAERGGHTALHLACRVR-AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 394 -----SSDILIRHLISAG 406
                  +          
Sbjct: 131 DSQPNPENEEEPRDEDWR 148

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 94.1 bits (235), Expect = 2e-21
 Identities = 23/170 (13%), Positives = 42/170 (24%), Gaps = 56/170 (32%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +H A    + ++++ L +   D+       G T LH A       V++ L+   A    
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD--- 217

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
             +  + G TPL  A  R  P +   L                   H A           
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLR-----------------AHGA----------- 249

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLL 364
                                       D  +    + + +   +     
Sbjct: 250 --------------------PE-PEDGGDKLSPCSSSGSDS-DSDNRDEG 277

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  114 bits (288), Expect = 6e-29
 Identities = 33/236 (13%), Positives = 59/236 (25%), Gaps = 64/236 (27%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
                 + G+            DV      +  T    AA +   + +  L+   D+ ++
Sbjct: 18  EYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLEDRDV-DA 72

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNT-SGETFLHSAVSGFQTYAFRRLD 316
            D  G T L   A  G    V  L  A    +  ++   G T LH A             
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAG----------- 120

Query: 317 RQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLELVQLLMS 366
                         +   ++          I  ++  G TAL +A    +        M 
Sbjct: 121 --------------YVRPEVVEALVELGADIEVEDERGLTALELA-REILKTTPKGNPMQ 165

Query: 367 ---------------------APSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
                                A    +  +   G     L++ +       +   H
Sbjct: 166 FGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVH 221

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 98.4 bits (246), Expect = 2e-23
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 39/186 (20%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
           A+   A  G+ K ++ L E   D+     + G T LH AAG  + EVV+ L+   A    
Sbjct: 80  ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD--- 136

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           I   D +G T L +A    +       +                                
Sbjct: 137 IEVEDERGLTALELAREILKTTPKGNPM-----------------QFGR----------- 168

Query: 315 LDRQVKLMKQLASGQIFNMEDI--INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINV 372
               ++ +  +  GQ+F   ++  I  K   G+   ++    +   +   +         
Sbjct: 169 -RIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKD-GGDCEWVKGVH-VAED 225

Query: 373 NVRDND 378
             +D +
Sbjct: 226 VAKDYE 231

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 92.7 bits (231), Expect = 2e-21
 Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 45/172 (26%)

Query: 226 DKQGSTILHAAAGRGQVEVVKDLI-ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILA 284
             +G+         G           + D+      +  TP   AA +     +  L+  
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLL-- 65

Query: 285 SPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI-------- 336
               +   + +G T L                                 +          
Sbjct: 66  EDRDVDAVDENGRTALLFVAG-------------------------LGSDKCVRLLAEAG 100

Query: 337 --INAKN-NDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
             ++ ++   G TALHMA  G V  E+V+ L+     ++ V D  G+T L+L
Sbjct: 101 ADLDHRDMRGGLTALHMA-AGYVRPEVVEALVEL-GADIEVEDERGLTALEL 150

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 23/131 (17%)

Query: 254 IINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFR 313
           I + T  +G     I    G           +        +  ET   +A          
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARK------- 55

Query: 314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN 373
                 + + QL         D ++A + +GRTAL          + V+LL  A   +++
Sbjct: 56  ---ADEQALSQLLED-----RD-VDAVDENGRTALLFVAGLG-SDKCVRLLAEA-GADLD 104

Query: 374 VRD-NDGMTTL 383
            RD   G+T L
Sbjct: 105 HRDMRGGLTAL 115

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 67.6 bits (166), Expect = 9e-13
 Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 59/222 (26%)

Query: 112 LYTAASAGDLGFVKQLL---DKNPLLVFGEGEYGVTDIFYAAAR-SKNCDVFRLIYDFAV 167
            +TAA   D   + QLL   D +        E G T + + A   S  C          V
Sbjct: 49  WWTAARKADEQALSQLLEDRDVD-----AVDENGRTALLFVAGLGSDKC----------V 93

Query: 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDK 227
             R L   G +    ++             A+H AA     ++++ L+E   D+    D+
Sbjct: 94  --RLLAEAGAD----LDHRDMRGGL----TALHMAAGYVRPEVVEALVELGADI-EVEDE 142

Query: 228 QGSTILHAAAGRGQVEVVKDLI-----------------ASFDI-----INSTDHQGNTP 265
           +G T L  A    +     + +                   F+      I     +G   
Sbjct: 143 RGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDV 202

Query: 266 LHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVS 305
            ++  ++          +  A       K+   E  L  AV+
Sbjct: 203 EYLVRWKDGGDCEWVKGVHVAE---DVAKD--YEDGLEYAVA 239

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  112 bits (282), Expect = 6e-29
 Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 58/191 (30%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            + +AA  G+L+ L  LL+N  +V   ++  G T L      G  E+ + L+   A+   
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGAN--- 62

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
            +  D  G   +H AA  G    ++ L+                    A           
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLL-----------------EFQA----------- 94

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374
                               D+ N ++N+G   LH+A     HL +V+ L+   + NV  
Sbjct: 95  --------------------DV-NIEDNEGNLPLHLAAKEG-HLRVVEFLVKHTASNVGH 132

Query: 375 RDNDGMTTLDL 385
           R++ G T  DL
Sbjct: 133 RNHKGDTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 97.1 bits (243), Expect = 1e-23
 Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 53/170 (31%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI-IN 256
           A+     G N +I + LL    +    +D+ G  ++H AA  G ++ ++ L+  F   +N
Sbjct: 41  ALQVMKLG-NPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLL-EFQADVN 97

Query: 257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD 316
             D++GN PLH+AA  G   VVE L+                  H+A +           
Sbjct: 98  IEDNEGNLPLHLAAKEGHLRVVEFLV-----------------KHTASN----------- 129

Query: 317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS 366
                               +  +N+ G TA  +A       E+V L+ +
Sbjct: 130 --------------------VGHRNHKGDTACDLARLYG-RNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 92.1 bits (230), Expect = 6e-22
 Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 58/158 (36%)

Query: 229 GSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
               L +AA RG +E +  L+    +   +N+ +  G T L +    G P +   L+   
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVN---VNAQNGFGRTALQVMKL-GNPEIARRLL--- 57

Query: 286 PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGR 345
                         L  A                               +  + K+  G 
Sbjct: 58  --------------LRGA-------------------------------NP-DLKDRTGF 71

Query: 346 TALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
             +H A      L+ +Q L+     +VN+ DN+G   L
Sbjct: 72  AVIHDAARAG-FLDTLQTLLEF-QADVNIEDNEGNLPL 107

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.9 bits (118), Expect = 5e-07
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 341 NNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
                  L  A      LE +  L+   ++NVN ++  G T L
Sbjct: 2   AEPWGNELASAAARG-DLEQLTSLLQN-NVNVNAQNGFGRTAL 42

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  111 bits (281), Expect = 1e-28
 Identities = 36/189 (19%), Positives = 57/189 (30%), Gaps = 57/189 (30%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
                 + G+            DV      +  T    AA +   + +  L+   D+ ++
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLEDRDV-DA 71

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDR 317
            D  G T L   A  G    V  L                     A              
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLA-----------------EAGA-------------- 100

Query: 318 QVKLMKQLASGQIFNMEDIINAKN-NDGRTALHMAITGNVHLELVQLLMSAPSINVNVRD 376
                            D+ + ++   G TALHMA  G V  E+V+ L+     ++ V D
Sbjct: 101 -----------------DL-DHRDMRGGLTALHMA-AGYVRPEVVEALVEL-GADIEVED 140

Query: 377 NDGMTTLDL 385
             G+T L+L
Sbjct: 141 ERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 82.5 bits (205), Expect = 2e-18
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 23/131 (17%)

Query: 254 IINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFR 313
           I + T  +G     I    G           +        +  ET   +A          
Sbjct: 6   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAAR-------- 53

Query: 314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN 373
                 + + QL   +     D ++A + +GRTAL          + V+LL  A   +++
Sbjct: 54  --KADEQALSQLLEDR-----D-VDAVDENGRTALLFVAGLG-SDKCVRLLAEA-GADLD 103

Query: 374 VRD-NDGMTTL 383
            RD   G+T L
Sbjct: 104 HRDMRGGLTAL 114

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 78.3 bits (194), Expect = 5e-17
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
           A+   A  G+ K ++ L E   D+     + G T LH AAG  + EVV+ L+   A    
Sbjct: 79  ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD--- 135

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
           I   D +G T L +A    +       +
Sbjct: 136 IEVEDERGLTALELAREILKTTPKGNPM 163

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.9 bits (102), Expect = 9e-05
 Identities = 5/50 (10%), Positives = 13/50 (26%), Gaps = 5/50 (10%)

Query: 334 EDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
           + I +    +G     +    + H               +V  ++  T  
Sbjct: 4   KIIGSRTAGEGAMEYLIE-WKDGHSPSWVPSSYI---AADV-VSEYETPW 48

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  109 bits (275), Expect = 4e-28
 Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 49/184 (26%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASF 252
            + +  AAR G    ++ L+ N     T  D  G++ LH AA  G     + L+    S 
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVS- 59

Query: 253 DIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTY 310
              ++      TPLH+AA  G   +VE L+   A    ++ K+    T LH A       
Sbjct: 60  --RDARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATE----- 109

Query: 311 AFRRLDRQVKLMKQLASGQIFNMEDI----------INAKNNDGRTALHMAITGNVHLEL 360
                                N +++          ++ ++   +TA  ++I    + +L
Sbjct: 110 --------------------HNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG-NEDL 148

Query: 361 VQLL 364
            ++L
Sbjct: 149 AEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 90.9 bits (227), Expect = 1e-21
 Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 52/155 (33%)

Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
               L  AA  GQ + V+ L+A+      TD  G +PLH+AA  G  +  E L+      
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLL------ 54

Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
                                                            +A+    RT L
Sbjct: 55  -----------RAGV-------------------------------SR-DARTKVDRTPL 71

Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
           HMA +   H  +V++L+     +VN +D   MT L
Sbjct: 72  HMAASEG-HANIVEVLLKH-GADVNAKDMLKMTAL 104

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 7/43 (16%)

Query: 343 DGRTALHMAITGNVHLELVQLLMS--APSINVNVRDNDGMTTL 383
           D    L  A       + V++LM+  A        D  G + L
Sbjct: 1   DLGKKLLEAARAG-QDDEVRILMANGA---PFT-TDWLGTSPL 38

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  111 bits (278), Expect = 7e-28
 Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 25/207 (12%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
             + A  G   ++ + +L + +   T  D+   T LH A   G  E+V+ L+        
Sbjct: 10  ICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--- 65

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           +N  D  G +PLHIAA  G   +V+AL++     ++  N +G T LH A S        R
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASK------NR 118

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374
            +  V L++  A+          +AK++   TA+H A     +L++V +L+     + N+
Sbjct: 119 HEIAVMLLEGGAN---------PDAKDHYDATAMHRAAAKG-NLKMVHILLFY-KASTNI 167

Query: 375 RDNDGMTTLDLLKQRPQSASSDILIRH 401
           +D +G T L L     +   +  L+  
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQ 194

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 98.0 bits (244), Expect = 3e-23
 Identities = 41/189 (21%), Positives = 70/189 (37%), Gaps = 30/189 (15%)

Query: 215 LENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ 274
           +E C             I + A      E+ + ++A   +   TD    T LH A   G 
Sbjct: 1   MEGCVS--------NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH 52

Query: 275 PAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFN 332
             +VE L+        ++ K+ +G + LH A       A    D  VK +    +     
Sbjct: 53  TEIVEFLLQLGVP---VNDKDDAGWSPLHIA-------ASAGXDEIVKALLVKGAH---- 98

Query: 333 MEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQS 392
               +NA N +G T LH A + N   E+  +L+     N + +D+   T +     +   
Sbjct: 99  ----VNAVNQNGCTPLHYAASKN-RHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNL 152

Query: 393 ASSDILIRH 401
               IL+ +
Sbjct: 153 KMVHILLFY 161

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 97.6 bits (243), Expect = 4e-23
 Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 25/209 (11%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
           A+H A   G+ +I++ LL+    V   +D  G + LH AA  G  E+VK L+     +N+
Sbjct: 43  ALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDR 317
            +  G TPLH AA + +  +   L+    +    K+    T +H A       A +   +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRA-------AAKGNLK 153

Query: 318 QVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN 377
            V ++    +          N ++ +G T LH+A      +E  + L++    ++ + + 
Sbjct: 154 MVHILLFYKAS--------TNIQDTEGNTPLHLACDEE-RVEEAKFLVTQ-GASIYIENK 203

Query: 378 DGMTTLDLLKQRPQSASSDILIRHLISAG 406
           +  T L +           + I   ++ G
Sbjct: 204 EEKTPLQV-----AKGGLGL-ILKRLAEG 226

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  111 bits (279), Expect = 1e-27
 Identities = 30/192 (15%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
           ++    R    K   E + +   V    +     +L  ++  G+ ++V+ +I   D  + 
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAFRRL 315
            + +G T LH A   G   +V+ L+    +   ++  ++ G T LH A S         +
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAAS------CNNV 116

Query: 316 DRQVK-LMKQLASGQIFNMEDIINAKNNDG---RTALHMAITGNVHLELVQLLMSAPSIN 371
               K L++  A+         + A               +    + +  Q L       
Sbjct: 117 Q-VCKFLVESGAA---------VFAMTYSDMQTAADKCEEMEEG-YTQCSQFLYGV-QEK 164

Query: 372 VNVRDNDGMTTL 383
           + + +   +  L
Sbjct: 165 MGIMNKGVIYAL 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  102 bits (256), Expect = 9e-25
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 26/184 (14%)

Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
           +  G   L         +   + IA    +          L  ++  G+  +V+ +I   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 286 PSMISVKNTSGETFLHSAVSG--FQTYAFRRLDRQVK-LMKQLASGQIFNMEDIINAKNN 342
               S+ N  G T LH+AV     +          VK L++   +         +NA ++
Sbjct: 61  DD-PSLPNDEGITALHNAVCAGHTEI---------VKFLVQFGVN---------VNAADS 101

Query: 343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHL 402
           DG T LH A + N ++++ + L+ +    V       M T     +  +   +    + L
Sbjct: 102 DGWTPLHCAASCN-NVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQC-SQFL 158

Query: 403 ISAG 406
               
Sbjct: 159 YGVQ 162

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 99.2 bits (248), Expect = 1e-23
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +  ++  G   +++ ++    D  +  + +G T LH A   G  E+VK L+    +   
Sbjct: 40  LLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN--- 95

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAF 312
           +N+ D  G TPLH AA      V + L+   A+   ++  +          +        
Sbjct: 96  VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEME------E 149

Query: 313 RRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINV 372
                  + +           E  +   N     AL          EL   +     + +
Sbjct: 150 GYTQ-CSQFL-------YGVQEK-MGIMNKGVIYALWDY-EPQNDDEL--PMKEGDCMTI 197

Query: 373 NVRDNDGMTTL 383
             R+++     
Sbjct: 198 IHREDEDEIEW 208

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 84.2 bits (209), Expect = 2e-18
 Identities = 39/286 (13%), Positives = 76/286 (26%), Gaps = 72/286 (25%)

Query: 112 LYTAASAGDLGFVKQLL----DKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV 167
           L             + +                  +  +   ++     D+ +       
Sbjct: 9   LPPGKRTNLRKTGSERIAHGMRVK------FNPLPLA-LLLDSSLEGEFDLVQR------ 55

Query: 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDK 227
               +  +  +        P+         A+H A   G+ +I+K L++   +V    D 
Sbjct: 56  ----IIYEVDDPSL-----PNDEGI----TALHNAVCAGHTEIVKFLVQFGVNV-NAADS 101

Query: 228 QGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILA 284
            G T LH AA    V+V K L+   A+   +  +D Q           G     + L   
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161

Query: 285 SPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDG 344
               + + N      L                                 +D +  K  D 
Sbjct: 162 QEK-MGIMNKGVIYALWDYEP--------------------------QNDDELPMKEGDC 194

Query: 345 RTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRP 390
            T +H         + ++   +       + D +G    +LL   P
Sbjct: 195 MTIIH-----REDEDEIEWWWA------RLNDKEGYVPRNLLGLYP 229

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  111 bits (278), Expect = 2e-27
 Identities = 47/273 (17%), Positives = 82/273 (30%), Gaps = 51/273 (18%)

Query: 141 YGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVH 200
           Y    IF A A+  NC     +  F         +  + E            E     + 
Sbjct: 12  YDRRSIFDAVAQ-SNCQELESLLPFLQR---SKKRLTDSE--------FKDPETGKTCLL 59

Query: 201 AA---ARGGNLKILKELLEN----------CTDVLTYRDKQGSTILHAAAGRGQVEVVKD 247
            A      G    +  LL+                T    +G T LH A  R  + +V  
Sbjct: 60  KAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTL 119

Query: 248 LIA--------------SFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISV 291
           L+                        + G  PL +AA   Q A+V+ L+     P+ IS 
Sbjct: 120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA 179

Query: 292 KNTSGETFLHSAV-SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM 350
           +++ G T LH+ V     T    +    +     +   ++     +    N  G T L +
Sbjct: 180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239

Query: 351 AITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
           A   +  + ++  ++         R+       
Sbjct: 240 A-ASSGKIGVLAYILQ--------REIHEPECR 263

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 78.7 bits (194), Expect = 3e-16
 Identities = 52/275 (18%), Positives = 82/275 (29%), Gaps = 68/275 (24%)

Query: 75  FDDVAKCRSKVARKL--FLECKSKNGKNSLIRAGYGGW-LLYTA---ASAGDLGFVKQLL 128
           FD VA+   +    L  FL+   K   +S  +    G   L  A      G    +  LL
Sbjct: 18  FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLL 77

Query: 129 DK------NPLLVF----GEGEYGVTDIFYAAAR----------SKNCDVFRLIYDFAVS 168
           D           V          G T +  A  R              DV          
Sbjct: 78  DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA-------- 129

Query: 169 PRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDV--LTYRD 226
                A G   ++        +        +  AA    L I+K LL+N      ++ RD
Sbjct: 130 ----AANGDFFKKTKGRPGFYFGE----LPLSLAACTNQLAIVKFLLQNSWQPADISARD 181

Query: 227 KQGSTILHAAAGRGQ----------------VEVVKDLIASFDIINSTDHQGNTPLHIAA 270
             G+T+LHA                      + +   L  +  +   T+ +G TPL +AA
Sbjct: 182 SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241

Query: 271 YRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
             G+  V+  ++         +        H+A  
Sbjct: 242 SSGKIGVLAYIL--------QREIHEPECRHAAAH 268

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 22/142 (15%)

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISV-------KNTSGETFLHSAVSGF 307
                      +  A  +     +E+L+                   +G+T L  A+   
Sbjct: 6   EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNL 65

Query: 308 QTYAFRRLDRQVKLMKQLAS--GQIFNMEDIINA----KNNDGRTALHMAITGNVHLELV 361
                   + Q   +  L     +  +++  +NA        G+TALH+AI    ++ LV
Sbjct: 66  H-------NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR-NMTLV 117

Query: 362 QLLMSAPSINVNVRDNDGMTTL 383
            LL+     +V    N      
Sbjct: 118 TLLVEN-GADVQAAANGDFFKK 138

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 40/275 (14%), Positives = 81/275 (29%), Gaps = 50/275 (18%)

Query: 29  PIDWAAANGHYDLVRELLRIDGNHLIKLTS--LRRIRRLET-----VWDDEEQFDDVAKC 81
            I  A A  +   +  LL        +LT    +     +T     + +     +D    
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 82  RSKVARKLFLECKSKNGKNSLIRAGYGGW-LLYTAASAGDLGFVKQLLDK---------- 130
              VARK   +   +    S   + Y G   L+ A    ++  V  L++           
Sbjct: 76  LLDVARKT--DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG 133

Query: 131 ---NPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGE--------- 178
                        +G       AA +    + + +   +  P  ++A+            
Sbjct: 134 DFFKKTKGRPGFYFGEL-PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192

Query: 179 LEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAG 238
                    + +   M N  +   A+      L+E+           +++G T L  AA 
Sbjct: 193 EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEI----------TNRKGLTPLALAAS 242

Query: 239 RGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG 273
            G++ V+  ++         +       H AA+  
Sbjct: 243 SGKIGVLAYIL-------QREIHEPECRHAAAHHH 270

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  109 bits (273), Expect = 8e-27
 Identities = 46/298 (15%), Positives = 84/298 (28%), Gaps = 70/298 (23%)

Query: 107 YGGWLLYTAASAGDLGFVKQLLDK-------NPLLVFGEGEYGVTDIFYAAARSKN--CD 157
           +    L++  S G    +  LL+             + EG  G T +  A    ++    
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60

Query: 158 VFRLIYDFAVSPRFLTAKGGELEEHI-EEIPSVYKWEMMNRAVHAAARGGNLKILKELLE 216
               +              G  +  +  +    +       A+H A    +L+ +K L+E
Sbjct: 61  CIMPLLQID-------KDSGNPKPLVNAQCTDEFYQGHS--ALHIAIEKRSLQCVKLLVE 111

Query: 217 NCTDV------------LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI---INSTDHQ 261
           N  DV                   G   L  AA   Q +VV  L+ +      + +TD  
Sbjct: 112 NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSL 171

Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKL 321
           GNT LH                         N+   + L   +          L    +L
Sbjct: 172 GNTVLHALVMIA------------------DNSPENSALVIHMYDGL------LQMGARL 207

Query: 322 MKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS--APSINVNVRDN 377
              +               N+ G T L +A      +E+ + ++         +   +
Sbjct: 208 CPTVQL---------EEISNHQGLTPLKLAAKEG-KIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (256), Expect = 1e-24
 Identities = 42/271 (15%), Positives = 80/271 (29%), Gaps = 74/271 (27%)

Query: 141 YGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVH 200
           +    +F   +R    ++  L+        +L      L +         +       + 
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLL-------EYLRWNSKYLTDSAYT-----EGSTGKTCLM 48

Query: 201 AAA---RGGNLKILKELLENCTDV----------LTYRDKQGSTILHAAAGRGQVEVVKD 247
            A    + G    +  LL+   D            T    QG + LH A  +  ++ VK 
Sbjct: 49  KAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKL 108

Query: 248 LI-------------ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM--ISVK 292
           L+                    +  + G  PL +AA   Q  VV  L+        +   
Sbjct: 109 LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT 168

Query: 293 NTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI 352
           ++ G T LH+ V                                + A N+   +AL + +
Sbjct: 169 DSLGNTVLHALV--------------------------------MIADNSPENSALVIHM 196

Query: 353 TGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
             +  L++   L         + ++ G+T L
Sbjct: 197 Y-DGLLQMGARLCPTVQ-LEEISNHQGLTPL 225

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (257), Expect = 7e-26
 Identities = 38/155 (24%), Positives = 56/155 (36%), Gaps = 33/155 (21%)

Query: 225 RDKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
            + +G T+LH A+ +G +  V+ L+   +     N  DH G TPLH A   G   VVE L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHAGWTPLHEACNHGHLKVVELL 62

Query: 282 IL--ASPSMISVKNTSGETFLHSAVSG--FQTYAFRRLDRQVK-LMKQLASGQIFNMEDI 336
           +   A    ++      ++ LH A                 VK L+   AS         
Sbjct: 63  LQHKAL---VNTTGYQNDSPLHDAAKNGHVDI---------VKLLLSYGAS--------- 101

Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSIN 371
            NA N  G   +           L+ L     S +
Sbjct: 102 RNAVNIFGLRPVDYTDD-ESMKSLLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 88.6 bits (221), Expect = 4e-21
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 31/137 (22%)

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVS-GFQTYA 311
              T+H+G T LHIA+ +G    VE L+   +     +VK+ +G T LH A + G     
Sbjct: 4   PF-TNHRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHAGWTPLHEACNHG----- 54

Query: 312 FRRLDRQVK-LMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS--AP 368
              L   V+ L++  A          +N       + LH A     H+++V+LL+S  A 
Sbjct: 55  --HLK-VVELLLQHKAL---------VNTTGYQNDSPLHDAAKNG-HVDIVKLLLSYGA- 100

Query: 369 SINVNVRDNDGMTTLDL 385
             + N  +  G+  +D 
Sbjct: 101 --SRNAVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 78.2 bits (194), Expect = 2e-17
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDIIN 256
           H A   G+LK+++ LL++   V      Q  + LH AA  G V++VK L+   AS    N
Sbjct: 48  HEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS---RN 103

Query: 257 STDHQGNTPLHIAAYRGQPAVVEALI 282
           + +  G  P+         +++    
Sbjct: 104 AVNIFGLRPVDYTDDESMKSLLLLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
           H AA+ G++ I+K LL          +  G   +          ++     +     S
Sbjct: 81  HDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  107 bits (267), Expect = 2e-25
 Identities = 28/193 (14%), Positives = 71/193 (36%), Gaps = 9/193 (4%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRG---QVEVVKDLIASF-D 253
            +H      NL+++K L+++ ++ L   D  G + L  A            + L+     
Sbjct: 134 PLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 192

Query: 254 IINSTDHQGNTPLHIAAYR-GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAF 312
            +   D    T LH      G      A       ++          + S  +  ++   
Sbjct: 193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252

Query: 313 RRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINV 372
            +   +   + +    +   + +++NA++++G T L++A     ++ +V  L+     + 
Sbjct: 253 DKNGERKDSILENLDLKWI-IANMLNAQDSNGDTCLNIAARLG-NISIVDALLDY-GADP 309

Query: 373 NVRDNDGMTTLDL 385
            + +  G+  +D 
Sbjct: 310 FIANKSGLRPVDF 322

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 93.6 bits (232), Expect = 5e-21
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 8/189 (4%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD 259
           H +      ++         ++    D+ G+T LH       +E+VK L+         D
Sbjct: 102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 161

Query: 260 HQGNTPLHIAAYRG---QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD 316
           + G + L  A            EAL+      + ++++   T LH  +    T       
Sbjct: 162 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII---ITSGMTGCS 218

Query: 317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSI--NVNV 374
              K    +  G I   ++       + + +      G     +++ L     I   +N 
Sbjct: 219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 278

Query: 375 RDNDGMTTL 383
           +D++G T L
Sbjct: 279 QDSNGDTCL 287

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 87.4 bits (216), Expect = 7e-19
 Identities = 29/201 (14%), Positives = 58/201 (28%), Gaps = 24/201 (11%)

Query: 225 RDKQGSTILHAAAGRGQV-EVVKDLIAS-FDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
                +      +    + EV      +  ++    D  GNTPLH         +V+ L+
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 283 LASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNN 342
               +     +  GE+ L  AV     Y     +    L+  L           +  +++
Sbjct: 152 KHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFE---ALLDYLY--------PCLILEDS 199

Query: 343 DGRTALHMAITGN----------VHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQS 392
             RT LH  I  +           +L+++   +            +   +    K   + 
Sbjct: 200 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK 259

Query: 393 ASSDILIRHLISAGGIFGCQD 413
            S    +        +   QD
Sbjct: 260 DSILENLDLKWIIANMLNAQD 280

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQ---VEVVKDLIASFDIIN 256
            AAA+     ++  +++     +     +  +  +   G  +   +E +       +++N
Sbjct: 218 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 277

Query: 257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAV 304
           + D  G+T L+IAA  G  ++V+AL+        + N SG   +    
Sbjct: 278 AQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.9 bits (155), Expect = 4e-11
 Identities = 19/177 (10%), Positives = 45/177 (25%), Gaps = 41/177 (23%)

Query: 198 AVHAAARGGN---LKILKELLENCTDVLTYRDKQGSTILHAAA-----------GRGQVE 243
            +  A +  N       + LL+     L   D    TILH               +  ++
Sbjct: 167 CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD 226

Query: 244 VVKDLIASFDI-INSTDHQGNTPLHIAAYRGQPAVVEALILASPSM---ISVKNTSGETF 299
           ++   I         +               +   +   +     +   ++ ++++G+T 
Sbjct: 227 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC 286

Query: 300 LHSAVSGFQTYAFRRLDRQVKLMKQL----ASGQIFNMEDIINAKNNDGRTALHMAI 352
           L+ A               + ++  L    A              N  G   +    
Sbjct: 287 LNIAA----------RLGNISIVDALLDYGAD---------PFIANKSGLRPVDFGA 324

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 99.9 bits (250), Expect = 1e-24
 Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 30/165 (18%)

Query: 226 DKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
            +  +  L  AA RG+VE V+ L+   A+    N+ +  G  P+ +    G   V E L+
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMM-MGSARVAELLL 64

Query: 283 LASPSMISVKNTSGETF-LHSAVS-GFQTYAFRRLDRQVK-LMKQLASGQIFNMEDIINA 339
           L   +  +  + +  T  +H A   GF       LD  +  L +  A          ++ 
Sbjct: 65  LHG-AEPNCADPATLTRPVHDAAREGF-------LD-TLVVLHRAGAR---------LDV 106

Query: 340 KNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLD 384
           ++  GR  + +A     H ++ + L +A +      ++  +   +
Sbjct: 107 RDAWGRLPVDLAEELG-HRDVARYLRAA-AGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 81.8 bits (203), Expect = 2e-18
 Identities = 33/162 (20%), Positives = 54/162 (33%), Gaps = 42/162 (25%)

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAF 312
             S+       L  AA RG+   V AL+   A+    +  N+ G   +   + G      
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMMMG------ 55

Query: 313 RRLDRQVK-LMKQLASGQIFNMEDIINAKNNDGRT-ALHMAITGNVHLELVQLLMS--AP 368
                  + L+   A           N  +    T  +H A      L+ + +L    A 
Sbjct: 56  -SAR-VAELLLLHGAE---------PNCADPATLTRPVHDAAREG-FLDTLVVLHRAGA- 102

Query: 369 SINVNVRDNDGMTTLDLLKQRPQSASS----DILIRHLISAG 406
              ++VRD  G   +DL       A      D+  R+L +A 
Sbjct: 103 --RLDVRDAWGRLPVDL-------AEELGHRDV-ARYLRAAA 134

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 78.7 bits (195), Expect = 2e-17
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTI-LHAAAGRGQVEVVKDLI---ASFD 253
            +     G + ++ + LL +  +     D    T  +H AA  G ++ +  L    A   
Sbjct: 48  PIQVMMMG-SARVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-- 103

Query: 254 IINSTDHQGNTPLHIAAYRGQPAVVEALI 282
            ++  D  G  P+ +A   G   V   L 
Sbjct: 104 -LDVRDAWGRLPVDLAEELGHRDVARYLR 131

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.5 bits (179), Expect = 3e-15
 Identities = 39/172 (22%), Positives = 53/172 (30%), Gaps = 35/172 (20%)

Query: 112 LYTAASAGDLGFVKQLL----DKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV 167
           L TAA+ G +  V+ LL    + N         YG   I        +  V  L      
Sbjct: 16  LATAAARGRVEEVRALLEAGANPN-----APNSYGRRPIQVMM--MGSARVAEL------ 62

Query: 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDK 227
               L   G E                  R VH AAR G L  L  L      +   RD 
Sbjct: 63  ----LLLHGAEPNCADP-----ATL---TRPVHDAAREGFLDTLVVLHRAGARL-DVRDA 109

Query: 228 QGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVE 279
            G   +  A   G  +V + L A      +   +G+    I A  G   + +
Sbjct: 110 WGRLPVDLAEELGHRDVARYLRA-----AAGGTRGSNHARIDAAEGPSDIPD 156

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 97.1 bits (243), Expect = 3e-24
 Identities = 38/141 (26%), Positives = 51/141 (36%), Gaps = 25/141 (17%)

Query: 226 DKQGSTILHAAAGRGQVEVVKDLIAS-FDIINSTDHQGNTPLHIAAYRGQPAVVEALIL- 283
                     A   G ++ VKD +A   D+ N T   G  PLH AA  GQ  ++E L+L 
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 284 -ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVK-LMKQLASGQIFNMEDIINAKN 341
            A    I+  +    T L SAV          +   VK L+ + A             K 
Sbjct: 63  GAD---INAPDKHHITPLLSAVY------EGHVS-CVKLLLSKGAD---------KTVKG 103

Query: 342 NDGRTALHMAITGNVHLELVQ 362
            DG TA            L+Q
Sbjct: 104 PDGLTAFEAT-DNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 88.6 bits (221), Expect = 4e-21
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD 259
             A + G+L  +K+ +    DV     + G   LH AA  GQ+E+++ L+     IN+ D
Sbjct: 12  MWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70

Query: 260 HQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSA 303
               TPL  A Y G  + V+ L+   A     +VK   G T   + 
Sbjct: 71  KHHITPLLSAVYEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 81.3 bits (202), Expect = 1e-18
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 38/134 (28%)

Query: 262 GNTPLHIAAYRGQPAVVEALILASPSM---ISVKNTSGETFLHSAVS-GFQTYAFRRLDR 317
            +     A   G    V+  +    +    ++     G   LH A   G           
Sbjct: 7   CDKEFMWALKNGDLDEVKDYV----AKGEDVNRTLEGGRKPLHYAADCG----------- 51

Query: 318 QVKLMKQL----ASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS--APSIN 371
           Q+++++ L    A          INA +    T L  A+    H+  V+LL+S  A   +
Sbjct: 52  QLEILEFLLLKGAD---------INAPDKHHITPLLSAVYEG-HVSCVKLLLSKGA---D 98

Query: 372 VNVRDNDGMTTLDL 385
             V+  DG+T  + 
Sbjct: 99  KTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 71.3 bits (176), Expect = 3e-15
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 200 HAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDIIN 256
           H AA  G L+IL+ LL    D+    DK   T L +A   G V  VK L+   A      
Sbjct: 45  HYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD---KT 100

Query: 257 STDHQGNTPLHIAAYRGQPAVVE 279
                G T       +   A+++
Sbjct: 101 VKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 54.7 bits (133), Expect = 3e-09
 Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 14/72 (19%)

Query: 339 AKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASS--- 395
              +        A+     L+ V+  ++    +VN     G   L         A+    
Sbjct: 2   PLGSMCDKEFMWALKNG-DLDEVKDYVAK-GEDVNRTLEGGRKPL-------HYAADCGQ 52

Query: 396 -DILIRHLISAG 406
            +I +  L+  G
Sbjct: 53  LEI-LEFLLLKG 63

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  100 bits (251), Expect = 6e-24
 Identities = 44/263 (16%), Positives = 74/263 (28%), Gaps = 72/263 (27%)

Query: 197 RAVHAAARGGNLKILKELLE-------NCTDVLTYRDKQGSTILHAAA---GRGQVEVVK 246
             +      G+   L+ LL          TD        G T L  A      G+ + + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 247 DLIASF-----------DIINSTDHQGNTPLHIAAYRGQPAVVEALI------------- 282
            L+                     ++G T LHIA  R     VE L+             
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 283 LASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNN 342
              P         GE  L  A    Q +    L           +G     +  +  +++
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL---------TENGH---KQADLRRQDS 174

Query: 343 DGRTALHMAI--------TGNVHLELVQLLMS------APSINVNVRDNDGMTTLDLLKQ 388
            G T LH  +              ++  LL+         +    + +NDG++ L +   
Sbjct: 175 RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM--- 231

Query: 389 RPQSASS----DILIRHLISAGG 407
               A+      I  +H+I    
Sbjct: 232 ----AAKTGKIGI-FQHIIRREI 249

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 95.9 bits (240), Expect = 1e-23
 Identities = 55/185 (29%), Positives = 78/185 (42%), Gaps = 69/185 (37%)

Query: 229 GSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
           G T LH AA  G +EVVK L+   A    +N+ D  G TPLH+AA  G   VV+ L    
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLL---- 54

Query: 286 PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGR 345
              +             A                               D+ NAK+ +GR
Sbjct: 55  ---LE----------AGA-------------------------------DV-NAKDKNGR 69

Query: 346 TALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASS----DILIRH 401
           T LH+A     HLE+V+LL+ A   +VN +D +G T L L       A+     ++ ++ 
Sbjct: 70  TPLHLAARNG-HLEVVKLLLEA-GADVNAKDKNGRTPLHL-------AARNGHLEV-VKL 119

Query: 402 LISAG 406
           L+ AG
Sbjct: 120 LLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 86.2 bits (215), Expect = 2e-20
 Identities = 47/111 (42%), Positives = 64/111 (57%), Gaps = 12/111 (10%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +H AAR G+L+++K LLE   DV   +DK G T LH AA  G +EVVK L+   A    
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSA 303
           +N+ D  G TPLH+AA  G   VV+ L+   A    ++ K+ +G T LH A
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 79.7 bits (198), Expect = 4e-18
 Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 7/88 (7%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +H AAR G+L+++K LLE   DV   +DK G T LH AA  G +EVVK L+   A    
Sbjct: 38  PLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 93

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
           +N+ D  G TPLH+AA  G   VV+ L+
Sbjct: 94  VNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 48.1 bits (116), Expect = 4e-07
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 6/43 (13%)

Query: 343 DGRTALHMAITGNVHLELVQLLMS--APSINVNVRDNDGMTTL 383
           +GRT LH+A     HLE+V+LL+   A   +VN +D +G T L
Sbjct: 1   NGRTPLHLAARNG-HLEVVKLLLEAGA---DVNAKDKNGRTPL 39

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 94.4 bits (236), Expect = 2e-23
 Identities = 42/161 (26%), Positives = 58/161 (36%), Gaps = 57/161 (35%)

Query: 226 DKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
            K G+T LH AA  G  E VK L+   A    +N+    GNTPLH+AA  G   +V+ L+
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 283 LASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNN 342
                               A                               D+ NA++ 
Sbjct: 63  -----------------AKGA-------------------------------DV-NARSK 73

Query: 343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
           DG T  H+A     H E+V+LL +    +VN R        
Sbjct: 74  DGNTPEHLAKKNG-HHEIVKLLDAK-GADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.4 bits (205), Expect = 4e-19
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +H AA+ G+ + +K+LL    DV   R K G+T LH AA  G  E+VK L+   A    
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD--- 67

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLH 301
           +N+    GNTP H+A   G   +V+ L    A    ++ ++       H
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD---VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 52.8 bits (128), Expect = 8e-09
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
               + DG T LH A   N H E V+ L+S    +VN R  DG T L
Sbjct: 2   HMWGSKDGNTPLHNA-AKNGHAEEVKKLLSK-GADVNARSKDGNTPL 46

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 94.4 bits (236), Expect = 4e-23
 Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 57/174 (32%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASF 252
            + +  AAR G    ++ L+ N  DV   +D+ G T L+ A   G +E+V+ L+   A  
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD- 72

Query: 253 DIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAF 312
             +N+ D  G TPLH+AA+ G   + E L+                  H A         
Sbjct: 73  --VNAVDAIGFTPLHLAAFIGHLEIAEVLL-----------------KHGA--------- 104

Query: 313 RRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS 366
                                 D+ NA++  G+TA  ++I    + +L ++L  
Sbjct: 105 ----------------------DV-NAQDKFGKTAFDISIGNG-NEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 90.5 bits (226), Expect = 1e-21
 Identities = 38/157 (24%), Positives = 58/157 (36%), Gaps = 55/157 (35%)

Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
               L  AA  GQ + V+ L+A+   +N+ D  G TPL++A   G   +VE L+      
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL------ 67

Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
                       + A                               D+ NA +  G T L
Sbjct: 68  -----------KNGA-------------------------------DV-NAVDAIGFTPL 84

Query: 349 HMAITGNVHLELVQLLMS--APSINVNVRDNDGMTTL 383
           H+A     HLE+ ++L+   A   +VN +D  G T  
Sbjct: 85  HLAAFIG-HLEIAEVLLKHGA---DVNAQDKFGKTAF 117

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 71.3 bits (176), Expect = 5e-15
 Identities = 27/131 (20%), Positives = 39/131 (29%), Gaps = 51/131 (38%)

Query: 253 DIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAF 312
              +         L  AA  GQ   V  L+                  + A         
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILM-----------------ANGA--------- 38

Query: 313 RRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINV 372
                                 D+ NAK+  G T L++A     HLE+V++L+     +V
Sbjct: 39  ----------------------DV-NAKDEYGLTPLYLATAHG-HLEIVEVLLKN-GADV 73

Query: 373 NVRDNDGMTTL 383
           N  D  G T L
Sbjct: 74  NAVDAIGFTPL 84

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  100 bits (249), Expect = 8e-23
 Identities = 39/196 (19%), Positives = 61/196 (31%), Gaps = 13/196 (6%)

Query: 198 AVHAAARGGNLKILKELLENCTDV-LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIIN 256
           A   AA  G+L +L  L E      +     +       AA  G + V+  L        
Sbjct: 131 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 190

Query: 257 STD--HQGNTPLHIAAYR-GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFR 313
           +     +       AA   G   V+  L L  P M++        +    V+ F      
Sbjct: 191 TAMIQAENYYAFRWAAVGRGHHNVINFL-LDCPVMLAYAEIHEFEYGEKYVNPFIARHVN 249

Query: 314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGN--VHLELVQLLMSAPSI- 370
           RL       K      +F++     ++   G   L   I  N  V L+ ++ L+S P I 
Sbjct: 250 RLKEMHDAFKLSNPDGVFDLVT--KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 307

Query: 371 ---NVNVRDNDGMTTL 383
                     D    L
Sbjct: 308 ALAPTATIPGDANELL 323

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 91.5 bits (227), Expect = 5e-20
 Identities = 53/389 (13%), Positives = 95/389 (24%), Gaps = 89/389 (22%)

Query: 17  WESTGDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFD 76
           WE+    +  A+ +     + + + +   L    N                  +   Q  
Sbjct: 26  WENLFQHFISANELSLMTLS-YKEAIHIFLPGTKNM-----------------EQVRQLL 67

Query: 77  DVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLG---FVKQLLDKNPL 133
            +         K       K G  S         + + AA  G       +  LL  + +
Sbjct: 68  CLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEI 120

Query: 134 LVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWE 193
            V           F  AA + +  V                    L E            
Sbjct: 121 -VKVIQAENYQ-AFRLAAENGHLHVLNR-----------------LCELAPTEIMAMIQA 161

Query: 194 MMNRAVHAAARGGNLKILKELLENCTDVL--TYRDKQGSTILHAAAGRGQVEVVKDLI-- 249
               A   AA  G+L +L  L E          + +       AA GRG   V+  L+  
Sbjct: 162 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC 221

Query: 250 -ASFDIINSTDHQ-------------------GNTPLHIAAYRGQPAVVEALILASPSMI 289
                     + +                    +    ++   G   +V           
Sbjct: 222 PVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKS-------- 273

Query: 290 SVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALH 349
             +   G   L + +        R  +  +  ++ L S               D    L 
Sbjct: 274 --ECLQGFYMLRNLIR-------RNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR 324

Query: 350 MAITGNVHLELVQLLMSAPSINVNVRDND 378
           +A     +     LL+S PS+    + N+
Sbjct: 325 LA-LRLGNQGACALLLSIPSVLALTKANN 352

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 77.3 bits (190), Expect = 3e-15
 Identities = 37/287 (12%), Positives = 75/287 (26%), Gaps = 73/287 (25%)

Query: 29  PIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARK 88
               AA NGH  ++  L  +    ++ +                                
Sbjct: 131 AFRLAAENGHLHVLNRLCELAPTEIMAM-------------------------------- 158

Query: 89  LFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGE-GEYGVTDIF 147
                      ++             AA  G L  + +L +  P                
Sbjct: 159 -----IQAENYHAFR----------LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 203

Query: 148 YAAARSKNCDVFRLIYDFAVSPRFLT---AKGGELEEHIEEIPSVYKWEMMNRAVHAAAR 204
           +AA    + +V   + D  V   +      + GE   +      V + + M+ A   +  
Sbjct: 204 WAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNP 263

Query: 205 GGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQ---VEVVKDLIASFDI-----IN 256
            G   ++ +              QG  +L     R     ++ ++ L++   I       
Sbjct: 264 DGVFDLVTKS----------ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA 313

Query: 257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
           +     N  L +A   G       L+    S+ SV   +     +  
Sbjct: 314 TIPGDANELLRLALRLGNQGACALLL----SIPSVLALTKANNYYIN 356

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.1 bits (174), Expect = 3e-13
 Identities = 25/195 (12%), Positives = 53/195 (27%), Gaps = 36/195 (18%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQ---VEVVKDLIASF 252
            R +         +  K+L  +       +  +   I   AA  G    ++ +  L+ S 
Sbjct: 63  VRQLLCLYYAHYNRNAKQLWSDAHK----KGIKSEVICFVAAITGCSSALDTLCLLLTSD 118

Query: 253 DIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM-ISVKNTSGETFLHSA-------V 304
           +I+     +      +AA  G   V+  L   +P+  +++           A       V
Sbjct: 119 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV 178

Query: 305 SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLL 364
                         +  +             I      +   A   A  G  H  ++  L
Sbjct: 179 --------------LNRL--CELAPTEATAMI----QAENYYAFRWAAVGRGHHNVINFL 218

Query: 365 MSAPSINVNVRDNDG 379
           +  P   +   +   
Sbjct: 219 LDCPV-MLAYAEIHE 232

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 93.3 bits (233), Expect = 1e-22
 Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 33/151 (21%)

Query: 225 RDKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
                   L  AA RGQVE V+ L+   A     N+ +  G  P+ +    G   V E L
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGAD---PNALNRFGRRPIQVMM-MGSAQVAELL 63

Query: 282 IL--ASPSMISVKNTSGETF-LHSAVSGFQTYAFR-RLDRQVK-LMKQLASGQIFNMEDI 336
           +L  A     +  + +  T  +H A       A    LD  +  L +  A          
Sbjct: 64  LLHGAE---PNCADPATLTRPVHDA-------AREGFLD-TLVVLHRAGAR--------- 103

Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSA 367
           ++  +  GR  + +A     H ++ + L +A
Sbjct: 104 LDVCDAWGRLPVDLAEEQG-HRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 86.3 bits (215), Expect = 3e-20
 Identities = 33/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
           I+      +  L  AA RGQ   V  L+ A     +  N  G   +   + G        
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMMG-------S 56

Query: 315 LDRQVK-LMKQLASGQIFNMEDIINAKNNDGRT-ALHMAITGNVHLELVQLLMS--APSI 370
                + L+   A           N  +    T  +H A      L+ + +L    A   
Sbjct: 57  AQ-VAELLLLHGAE---------PNCADPATLTRPVHDAAREG-FLDTLVVLHRAGA--- 102

Query: 371 NVNVRDNDGMTTLDLLKQRPQSASS----DILIRHLISAG 406
            ++V D  G   +DL       A      DI  R+L +A 
Sbjct: 103 RLDVCDAWGRLPVDL-------AEEQGHRDI-ARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 82.5 bits (205), Expect = 7e-19
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 10/110 (9%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +  AA  G ++ +++LLE   D     ++ G   +      G  +V + L+   A    
Sbjct: 15  GLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMM-MGSAQVAELLLLHGAE--- 69

Query: 255 INSTDHQGNT-PLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
            N  D    T P+H AA  G    +  L  A    + V +  G   +  A
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 80.2 bits (199), Expect = 4e-18
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTI-LHAAAGRGQVEVVKDLI---ASFD 253
            +     G + ++ + LL +  +     D    T  +H AA  G ++ +  L    A   
Sbjct: 48  PIQVMMMG-SAQVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-- 103

Query: 254 IINSTDHQGNTPLHIAAYRGQPAVVEALI 282
            ++  D  G  P+ +A  +G   +   L 
Sbjct: 104 -LDVCDAWGRLPVDLAEEQGHRDIARYLH 131

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 34/143 (23%), Positives = 46/143 (32%), Gaps = 30/143 (20%)

Query: 112 LYTAASAGDLGFVKQLL----DKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV 167
           L TAA+ G +  V+QLL    D N         +G   I        +  V  L      
Sbjct: 16  LATAAARGQVETVRQLLEAGADPN-----ALNRFGRRPIQVMM--MGSAQVAEL------ 62

Query: 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDK 227
               L   G E                + R VH AAR G L  L  L      +    D 
Sbjct: 63  ----LLLHGAEPNCADPA--------TLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDA 109

Query: 228 QGSTILHAAAGRGQVEVVKDLIA 250
            G   +  A  +G  ++ + L A
Sbjct: 110 WGRLPVDLAEEQGHRDIARYLHA 132

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 80.5 bits (200), Expect = 9e-19
 Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 7/88 (7%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDI 254
            +H AAR G+L+++K LLE   DV   +DK G T LH AA  G +EVVK L+   A    
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
           +N+ D  G TPLH+AA  G   VV+ L+
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.5 bits (182), Expect = 3e-16
 Identities = 45/143 (31%), Positives = 59/143 (41%), Gaps = 58/143 (40%)

Query: 229 GSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
           G T LH AA  G +EVVK L+   A    +N+ D  G TPLH+AA  G            
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNG------------ 46

Query: 286 PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVK-LMKQLASGQIFNMEDIINAKNNDG 344
                          H  V              VK L++  A          +NAK+ +G
Sbjct: 47  ---------------HLEV--------------VKLLLEAGAD---------VNAKDKNG 68

Query: 345 RTALHMAITGNVHLELVQLLMSA 367
           RT LH+A     HLE+V+LL+ A
Sbjct: 69  RTPLHLAARNG-HLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 60.4 bits (148), Expect = 9e-12
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 18/76 (23%)

Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMS--APSINVNVRDNDGMTTLDLLKQRPQSAS 394
           +NAK+ +GRT LH+A     HLE+V+LL+   A   +VN +D +G T L         A+
Sbjct: 28  VNAKDKNGRTPLHLAARNG-HLEVVKLLLEAGA---DVNAKDKNGRTPL-------HLAA 76

Query: 395 S----DILIRHLISAG 406
                ++ ++ L+ AG
Sbjct: 77  RNGHLEV-VKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.5 bits (117), Expect = 2e-07
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
           +GRT LH+A   N HLE+V+LL+ A   +VN +D +G T L
Sbjct: 1   NGRTPLHLA-ARNGHLEVVKLLLEA-GADVNAKDKNGRTPL 39

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 78.8 bits (195), Expect = 7e-18
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDIINST 258
            +   +      L+   + +           L  AA  GQ + V+ L+   A    + + 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGAD---VAAK 53

Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
           D  G+TPLH+AA  G   VV+ L+ A    +  ++  G+T    ++ 
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISID 99

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 65.7 bits (161), Expect = 3e-13
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASF 252
            + +  AAR G    ++ L+ N  DV   +DK GST LH AA  G +EVVK L+   A  
Sbjct: 25  GKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD- 82

Query: 253 DIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
             + + D  G T   I+   G   + E L
Sbjct: 83  --VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 25/132 (18%)

Query: 269 AAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFR-RLDRQVK-LMKQLA 326
            +          L+           +     L  A       A   + D +V+ LM   A
Sbjct: 1   GSSHHHHHHSSGLVPRGSH----MGSDLGKKLLEA-------ARAGQDD-EVRILMANGA 48

Query: 327 SGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLL 386
                     + AK+ +G T LH+A     HLE+V+LL+ A   +V  +D  G T  D+ 
Sbjct: 49  D---------VAAKDKNGSTPLHLAARNG-HLEVVKLLLEA-GADVXAQDKFGKTAFDIS 97

Query: 387 KQRPQSASSDIL 398
                   ++IL
Sbjct: 98  IDNGNEDLAEIL 109

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.5 bits (182), Expect = 7e-14
 Identities = 73/536 (13%), Positives = 153/536 (28%), Gaps = 159/536 (29%)

Query: 35  ANGHYDLVRELLRIDGNHLI-------KLTSLRRIRRLETV---WDDEEQFDDVAKCRSK 84
                  V E+LRI+   L+       +  S+     +E     ++D + F      R +
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 85  VARKLFLECKSKNGKNSLIRAGYGGWL-LYTAASAGDLGFVKQLL------DKNPLLVFG 137
              KL         + +L+       + +      G LG  K  +               
Sbjct: 136 PYLKL---------RQALLELRPAKNVLID-----GVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 138 EGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKW----- 192
                   IF+   ++ N     L     +  + +        +H   I           
Sbjct: 182 FK------IFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 193 -EMMNRAVHAAARGGNLKIL-----KELLE----NCTDVLTYRDKQGSTILHAAAGRGQV 242
             ++    +       L +L      +       +C  +LT R KQ +  L +AA    +
Sbjct: 235 RRLLKSKPYENC----LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-SAATTTHI 289

Query: 243 EVV-----------KDLIASFDIINSTD-----HQGNTPLHIAAYRGQPAVVEALILASP 286
            +            K L+  +      D        N P  +       +++   I    
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRL-------SIIAESIRDGL 341

Query: 287 SMIS----VKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI-INAKN 341
           +       V      T + S+++  +   +R      K+  +L+   +F      I    
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYR------KMFDRLS---VFP-PSAHIPTI- 390

Query: 342 NDGRTALHM---AITGNVHLELVQLLMSAPSINVNVRDNDGMTT------LDLLKQRPQS 392
                 L +    +  +  + +V  L     +    +     T       L+L  +    
Sbjct: 391 -----LLSLIWFDVIKSDVMVVVNKLHKYSLVE---KQPKESTISIPSIYLELKVKLENE 442

Query: 393 ASSDILIRHLISAGGIFGCQDYSARRA------------------IASHIKMLGNGSSPG 434
            +   L R ++          Y+  +                   I  H+K + +     
Sbjct: 443 YA---LHRSIVDH--------YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM- 490

Query: 435 TSFRISDTEIFL-YTGID--VSSDGNANSGSGGMSSSSTELNQF-------DPTND 480
           T FR     +FL +  ++  +  D  A + SG + ++  +L  +       DP  +
Sbjct: 491 TLFR----MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 72/503 (14%), Positives = 137/503 (27%), Gaps = 155/503 (30%)

Query: 65  LETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFV 124
            +++   EE  D +   +  V+  L L                  W L +        FV
Sbjct: 42  PKSILSKEE-IDHIIMSKDAVSGTLRLF-----------------WTLLSKQEEMVQKFV 83

Query: 125 KQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIE 184
           +++L  N         Y     F  +          ++    +  R        L    +
Sbjct: 84  EEVLRIN---------YK----FLMSPIKTEQRQPSMMTRMYIEQR------DRLYNDNQ 124

Query: 185 EIP--SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTI-LHAAAGRGQ 241
                +V + +   +             L++ L           +    + +    G G+
Sbjct: 125 VFAKYNVSRLQPYLK-------------LRQAL--------LELRPAKNVLIDGVLGSGK 163

Query: 242 VEVVKDLIASFDIINSTDHQGNTP-----LHIAAYRGQPAVVEALILASPSMISVKNTSG 296
             V  D+  S+ +      Q         L++        V+E  +L         N   
Sbjct: 164 TWVALDVCLSYKV------QCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQIDPN--- 212

Query: 297 ETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFN----MED-----IINAKNNDGRTA 347
                S          R    Q +L + L S    N    + +       NA N   +  
Sbjct: 213 ---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI- 268

Query: 348 LHMAITGNVHLELVQLLMSAPSINVNVRD-NDGMT---TLDL----LKQRPQSASSDILI 399
             +  T     ++   L +A + ++++   +  +T      L    L  RPQ    ++L 
Sbjct: 269 --LLTTRFK--QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 400 RH--LISAGGIFG--CQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSD 455
            +   +S   I     +D  A      + K +             D    L T I+ S  
Sbjct: 325 TNPRRLS---IIAESIRDGLAT---WDNWKHVNC-----------DK---LTTIIESS-- 362

Query: 456 GNANSGSGGMSSSSTELNQFDPTNDNQSSSTDKK--PAGSVNVAAQRLKSVFHWPKLKEK 513
                           LN  +P  + +         P  S ++    L  +  W  + + 
Sbjct: 363 ----------------LNVLEP-AEYRKMFDRLSVFPP-SAHIPTILLSLI--WFDVIKS 402

Query: 514 KPERF-----KKSLDEGSDEPPT 531
                     K SL E   +  T
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKEST 425

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 60.4 bits (146), Expect = 4e-10
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 9/117 (7%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDV-----LTYRDKQGSTILHAAAGRGQ---VEVVKD 247
             ++  A +  ++  L +   +  D+     L    +   T LH A        + +V  
Sbjct: 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF 190

Query: 248 LIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAV 304
           L+ +   ++    +G+T LH          ++ L L   + I + N SGET L  A 
Sbjct: 191 LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL-LRGKASIEIANESGETPLDIAK 246

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 60.0 bits (145), Expect = 5e-10
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 198 AVHAAARGGN---LKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           A+H A R  +   L I+  L++N  ++   +  +GST LH        E +K L+     
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILA 284
           I   +  G TPL IA         E L  A
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 290 SVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALH 349
           +  +   ET LH AV      +             +    + N  ++ + +   G TALH
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSL-----------HIVDFLVQNSGNL-DKQTGKGSTALH 210

Query: 350 MAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILI 399
                + + E ++LL+   + ++ + +  G T LD+ K+       ++L 
Sbjct: 211 YCCLTD-NAECLKLLLRGKA-SIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGN--VHLELVQLLM 365
                 +      L++  A G     +  +   +    TALH+A+       L +V  L+
Sbjct: 133 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 192

Query: 366 SAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
              S N++ +   G T L        +    +L+R 
Sbjct: 193 -QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 198 AVHAAARGGN---LKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
            +H A +  N   L ++  +++N   +   +   G+T LH AA   Q + +K L+    +
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILA 284
           + + +  G T L IA  +      E L  A
Sbjct: 252 VGTVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 14/117 (11%)

Query: 283 LASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNN 342
              P          E  LH AV      +       V  + Q       N   + +AK  
Sbjct: 177 FGQPLPGPDAQAPEELVLHLAVKVANQASLP----LVDFIIQ-------NGGHL-DAKAA 224

Query: 343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILI 399
           DG TALH A   N   + ++LL+   +  V   +  G T LD+ +++      ++L 
Sbjct: 225 DGNTALHYAALYN-QPDCLKLLLKGRA-LVGTVNEAGETALDIARKKHHKECEELLE 279

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 33/153 (21%), Positives = 49/153 (32%), Gaps = 28/153 (18%)

Query: 225 RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ------GNTPLHIA---AYRGQP 275
           R       L  A     +  V +  A+                    LH+A   A +   
Sbjct: 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 206

Query: 276 AVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVK-LMKQLASGQIFNME 334
            +V+  I+ +   +  K   G T LH A    Q          +K L+K  A        
Sbjct: 207 PLVD-FIIQNGGHLDAKAADGNTALHYAALYNQP-------DCLKLLLKGRAL------- 251

Query: 335 DIINAKNNDGRTALHMAITGNVHLELVQLLMSA 367
             +   N  G TAL +A   + H E  +LL  A
Sbjct: 252 --VGTVNEAGETALDIARKKH-HKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 321 LMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGN-VHLELVQLLMSAPSINVNVRDND 378
           +++  A+GQ F                LH+A+   N   L LV  ++     +++ +  D
Sbjct: 167 VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAAD 225

Query: 379 GMTTLDLLKQRPQSASSDILIRH 401
           G T L       Q     +L++ 
Sbjct: 226 GNTALHYAALYNQPDCLKLLLKG 248

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 54.8 bits (131), Expect = 4e-08
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 1/124 (0%)

Query: 182 HIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQ 241
           H  ++  V   +     +  A    +L   + LL+N  +V    D  G   LH A   G 
Sbjct: 222 HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGH 280

Query: 242 VEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH 301
             +    +     + + D +G  PL IA       +V  L LA                +
Sbjct: 281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETY 340

Query: 302 SAVS 305
             + 
Sbjct: 341 LDIF 344

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 51.3 bits (122), Expect = 5e-07
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 19/167 (11%)

Query: 217 NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST--DHQGNTPLHIAAYRGQ 274
                       G+ +  A+     +  + D +A    +N         TPL  A     
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247

Query: 275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNME 334
               E L+    + ++  +++G   LH A     T            +K+ A        
Sbjct: 248 LLACEFLLQNG-ANVNQADSAGRGPLHHATILGHTGLACLF------LKRGAD------- 293

Query: 335 DIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMT 381
             + A++++GR  L +A+    + ++V LL  A              
Sbjct: 294 --LGARDSEGRDPLTIAMETA-NADIVTLLRLAKMREAEAAQGQAGD 337

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 321 LMKQLASGQIFNMEDIINAKNNDGRTALHMAIT--GNVHLELVQLLMSAPSINVNVRDND 378
           +++  A+GQ F                LH+A+       L LV  ++     +++ +  D
Sbjct: 148 VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAAD 206

Query: 379 GMTTLDLLKQRPQSASSDILIRH 401
           G T L       Q     +L++ 
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKG 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	677
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.84
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.82
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.79
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.79
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.78
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.76
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.76
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.65
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.57

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8e-58  Score=503.31  Aligned_cols=372  Identities=22%  Similarity=0.232  Sum_probs=340.4

Q ss_pred             cccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchh
Q 005790           24 WWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLI  103 (677)
Q Consensus        24 ~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~  103 (677)
                      ..|.||||+||..|++++|++|+++|++++..            ...+.++||.|+..++.+++++|++    .|++++.
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~------------~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~   75 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVS------------NVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNA   75 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCS------------SSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSC
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC------------CCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCC
Confidence            35789999999999999999999999998743            5578999999999999999999999    8999999


Q ss_pred             hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790          104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI  183 (677)
Q Consensus       104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~  183 (677)
                      ++..|.||||+|+..|+.++|++|+++|+ +++..+..|.||||+|+ ..|+.+++++|+++|++++..+..        
T Consensus        76 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~--------  145 (437)
T 1n11_A           76 KAKDDQTPLHCAARIGHTNMVKLLLENNA-NPNLATTAGHTPLHIAA-REGHVETVLALLEKEASQACMTKK--------  145 (437)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCCTTCCCHHHHHH-HHTCHHHHHHHHHTTCCSCCCCTT--------
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHhCCC-CCCCCCCCCCcHHHHHH-HcCCHHHHHHHHhCCCCCcCCCCC--------
Confidence            99999999999999999999999999997 56678889999999996 679999999999999988765543        


Q ss_pred             hcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC
Q 005790          184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN  263 (677)
Q Consensus       184 ~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~  263 (677)
                                 |.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus       146 -----------g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  213 (437)
T 1n11_A          146 -----------GFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY  213 (437)
T ss_dssp             -----------SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCC
T ss_pred             -----------CCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCC
Confidence                       468999999999999999999999998 78899999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCC
Q 005790          264 TPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNND  343 (677)
Q Consensus       264 tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~  343 (677)
                      ||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..          ++.+++++|++.+     ++++..+..
T Consensus       214 t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~----------g~~~~v~~Ll~~~-----~~~~~~~~~  277 (437)
T 1n11_A          214 TPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQE----------GHAEMVALLLSKQ-----ANGNLGNKS  277 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHT----------TCHHHHHHHHTTT-----CCTTCCCTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHC----------CCHHHHHHHHhcC-----CCCCCCCCC
Confidence            9999999999999999999999 67899999999999999994          5566777777655     558889999


Q ss_pred             CchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHH
Q 005790          344 GRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASH  423 (677)
Q Consensus       344 G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~a  423 (677)
                      |.||||+|+..+ +.+++++|++ .|+++|.+|..|+||||+|+..++.+    ++++|+++|+++|.+|..|+||||+|
T Consensus       278 g~t~L~~A~~~~-~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~A  351 (437)
T 1n11_A          278 GLTPLHLVAQEG-HVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIK----LVKFLLQHQADVNAKTKLGYSPLHQA  351 (437)
T ss_dssp             CCCHHHHHHHHT-CHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCSH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCHHHHHHHcC-CHHHHHHHHh-CCccCCCCCCCCCCHHHHHHHcCcHH----HHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence            999999999988 9999999999 89999999999999999999999988    78999999999999999999999999


Q ss_pred             HHHhCCCCCCCCccchhhHHHHHHcCCCCCCCCCCCCCCCCC
Q 005790          424 IKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGM  465 (677)
Q Consensus       424 l~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~~~g~t~~~~  465 (677)
                      +....          .+++++|+++||+++..+..|.|+...
T Consensus       352 ~~~g~----------~~iv~~Ll~~ga~~~~~~~~g~t~l~~  383 (437)
T 1n11_A          352 AQQGH----------TDIVTLLLKNGASPNEVSSDGTTPLAI  383 (437)
T ss_dssp             HHTTC----------HHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred             HHCCh----------HHHHHHHHHCcCCCCCCCCCCCCHHHH
Confidence            98533          889999999999999999888875543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-54  Score=474.63  Aligned_cols=359  Identities=25%  Similarity=0.275  Sum_probs=327.8

Q ss_pred             ccccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCch
Q 005790           23 QWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSL  102 (677)
Q Consensus        23 ~~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~  102 (677)
                      +..|.||||+||..|+.++|++|+++|++++.            ....+.||||+|+..++.+++++|++    .|++++
T Consensus        44 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~  107 (437)
T 1n11_A           44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNA------------KAKDDQTPLHCAARIGHTNMVKLLLE----NNANPN  107 (437)
T ss_dssp             SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC------------CCTTSCCHHHHHHHHTCHHHHHHHHH----HTCCTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC------------CCCCCCCHHHHHHHCCCHHHHHHHHh----CCCCCC
Confidence            34578999999999999999999999999874            35678999999999999999999999    899999


Q ss_pred             hhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhh
Q 005790          103 IRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEH  182 (677)
Q Consensus       103 ~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~  182 (677)
                      ..+..|.||||+|+..|+.++|++|+++++ .....+..|.||||+|+ ..|+.+++++|+++|++++..+..       
T Consensus       108 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~-------  178 (437)
T 1n11_A          108 LATTAGHTPLHIAAREGHVETVLALLEKEA-SQACMTKKGFTPLHVAA-KYGKVRVAELLLERDAHPNAAGKN-------  178 (437)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCSS-------
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCcCCCCCCCCHHHHHH-HcCCHHHHHHHHhCCCCCCCCCCC-------
Confidence            999999999999999999999999999987 45567788999999985 779999999999999998876544       


Q ss_pred             hhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCC
Q 005790          183 IEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG  262 (677)
Q Consensus       183 ~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g  262 (677)
                                  |.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus       179 ------------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  245 (437)
T 1n11_A          179 ------------GLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG  245 (437)
T ss_dssp             ------------CCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             ------------CCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence                        378999999999999999999999998 7788999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCC
Q 005790          263 NTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNN  342 (677)
Q Consensus       263 ~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~  342 (677)
                      .||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+.          .++.+++++|++.+     ++++.+|.
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~----------~~~~~~~~~Ll~~g-----~~~~~~~~  309 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQ----------EGHVPVADVLIKHG-----VMVDATTR  309 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHH----------HTCHHHHHHHHHHT-----CCTTCCCS
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHH----------cCCHHHHHHHHhCC-----ccCCCCCC
Confidence            99999999999999999999998 6789999999999999999          45566777777655     55899999


Q ss_pred             CCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHH
Q 005790          343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIAS  422 (677)
Q Consensus       343 ~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~  422 (677)
                      .|.||||+|+..+ +.++|++|++ .|+|+|.+|..|.||||+|+..++.+    ++++|+++|++++.+|..|+|||++
T Consensus       310 ~g~t~L~~A~~~g-~~~~v~~Ll~-~gad~n~~~~~g~t~L~~A~~~g~~~----iv~~Ll~~ga~~~~~~~~g~t~l~~  383 (437)
T 1n11_A          310 MGYTPLHVASHYG-NIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTD----IVTLLLKNGASPNEVSSDGTTPLAI  383 (437)
T ss_dssp             SCCCHHHHHHHSS-CSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred             CCCCHHHHHHHcC-cHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHCChHH----HHHHHHHCcCCCCCCCCCCCCHHHH
Confidence            9999999999988 9999999999 99999999999999999999999987    7999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCccchhhHHHHHHcCCC
Q 005790          423 HIKMLGNGSSPGTSFRISDTEIFLYTGID  451 (677)
Q Consensus       423 al~~~~~~~~~~~~~~~~~v~~LL~~Gad  451 (677)
                      |.....          .+++++|......
T Consensus       384 A~~~g~----------~~~~~~l~~~~~~  402 (437)
T 1n11_A          384 AKRLGY----------ISVTDVLKVVTDE  402 (437)
T ss_dssp             HHHTTC----------HHHHHHHHHHCCC
T ss_pred             HHHcCc----------HHHHHHHHhcccc
Confidence            987533          7788888776543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.8e-45  Score=389.23  Aligned_cols=297  Identities=25%  Similarity=0.281  Sum_probs=259.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790          107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI  186 (677)
Q Consensus       107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~  186 (677)
                      .|.|+||.||..|++++|++||++|+++....+..|+||||+|| ..|+.++|++|+++|++++..+..+          
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~-~~g~~~iv~~Ll~~ga~~~~~~~~~----------   92 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV-QMSREDIVELLLRHGADPVLRKKNG----------   92 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTTC----------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHH-HcCCHHHHHHHHHcCCchhhhccCC----------
Confidence            46799999999999999999999998554444456999999985 7799999999999999998766543          


Q ss_pred             hhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCC--------
Q 005790          187 PSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST--------  258 (677)
Q Consensus       187 ~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~--------  258 (677)
                               .++++.++..+...++..+++.++++ +..|..|.||||+|+..|+.+++++|+++|++++..        
T Consensus        93 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~  162 (337)
T 4g8k_A           93 ---------ATPFILAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE  162 (337)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC----
T ss_pred             ---------CchhHHHHhcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccc
Confidence                     67999999999999999999999998 789999999999999999999999999999998754        


Q ss_pred             --CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhh
Q 005790          259 --DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI  336 (677)
Q Consensus       259 --d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~  336 (677)
                        +..|.||||+|+..|+.++|++||++.+++++..+..|.|+|+.++..+..      ....+++++|++.+     ++
T Consensus       163 ~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~------~~~~~i~~lLl~~g-----ad  231 (337)
T 4g8k_A          163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD------SDVEAITHLLLDHG-----AD  231 (337)
T ss_dssp             -CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT------TTHHHHHHHHHHTT-----CC
T ss_pred             cccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc------ccHHHHHHHHHHCC-----CC
Confidence              446899999999999999999999876588999999999999988764432      23356778887765     56


Q ss_pred             hhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccC
Q 005790          337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSA  416 (677)
Q Consensus       337 in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G  416 (677)
                      +|.+|..|.||||+|+..+ +.++|++|++..|+++|.+|.+|+||||+|+..|+.+    ++++|+++||++|.+    
T Consensus       232 ~n~~d~~g~t~L~~a~~~~-~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~----iv~~Ll~~GAd~n~~----  302 (337)
T 4g8k_A          232 VNVRGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK----IAELLCKRGASTDCG----  302 (337)
T ss_dssp             TTCCCGGGCCHHHHHHHTT-CHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHTTSCSSTTC----
T ss_pred             CCCcCCCCCCHHHHHHHhh-hhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCC----
Confidence            8999999999999999988 9999999998679999999999999999999999987    799999999999864    


Q ss_pred             CchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCC
Q 005790          417 RRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSD  455 (677)
Q Consensus       417 ~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~  455 (677)
                       +||++|+....          .++|++||++|||+|..
T Consensus       303 -~~L~~A~~~~~----------~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          303 -DLVMTARRNYD----------HSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             -CHHHHHHHTTC----------HHHHHHHHHTTCCC---
T ss_pred             -CHHHHHHHcCC----------HHHHHHHHHCcCCCCCC
Confidence             59999988533          88999999999999864

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.7e-45  Score=386.89  Aligned_cols=303  Identities=21%  Similarity=0.225  Sum_probs=257.0

Q ss_pred             cccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchh
Q 005790           24 WWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLI  103 (677)
Q Consensus        24 ~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~  103 (677)
                      ..|.||||.||+.|++++|++||++|+++|..           ....+.||||+|+..++.+++++|++    +|++++.
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~-----------~~~~g~TpLh~A~~~g~~~iv~~Ll~----~ga~~~~   87 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-----------EEEGGWTPLHNAVQMSREDIVELLLR----HGADPVL   87 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCC-----------CTTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTC
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc-----------CCCCCcCHHHHHHHcCCHHHHHHHHH----cCCchhh
Confidence            45789999999999999999999999999753           23458899999999999999999999    9999999


Q ss_pred             hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790          104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI  183 (677)
Q Consensus       104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~  183 (677)
                      ++..+.++++.++..+...++..+++.++ +++..+..|.|||++|+ ..|+.+++++|+++|++++........     
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~g~t~l~~A~-~~~~~~~~~~ll~~ga~~~~~~~~~~~-----  160 (337)
T 4g8k_A           88 RKKNGATPFILAAIAGSVKLLKLFLSKGA-DVNECDFYGFTAFMEAA-VYGKVKALKFLYKRGANVNLRRKTKED-----  160 (337)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCBCTTCCBHHHHHH-HTTCHHHHHHHHHTTCCTTCCCCCC-------
T ss_pred             hccCCCchhHHHHhcccchhhHHhhhccc-hhhhhccCCCCHHHHHH-HcCcHHHHHHHHHcCCCcchhhccccc-----
Confidence            99999999999999999999999999987 67778999999999985 779999999999999999866544322     


Q ss_pred             hcchhhhhhhccchHHHHHHhcCCHHHHHHHHh-cCCCccccCCCCCCcHHHHHHHhCC----HHHHHHHHhcCCCCCCC
Q 005790          184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLE-NCTDVLTYRDKQGSTILHAAAGRGQ----VEVVKDLIASFDIINST  258 (677)
Q Consensus       184 ~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~-~ga~~~~~~d~~g~TpL~~A~~~g~----~eivk~Ll~~ga~in~~  258 (677)
                          ....+..|.||||+|+..|+.++|++||+ .|+++ +..+..|.|+|++++..++    .+++++|+++|++++.+
T Consensus       161 ----~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~  235 (337)
T 4g8k_A          161 ----QERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR  235 (337)
T ss_dssp             -------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCC
T ss_pred             ----cccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCc
Confidence                12234457899999999999999999996 58888 7788899999988876554    46888999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhh
Q 005790          259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIIN  338 (677)
Q Consensus       259 d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in  338 (677)
                      |..|.||||+|+..|+.+++++|++..+.+                                                +|
T Consensus       236 d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~------------------------------------------------vn  267 (337)
T 4g8k_A          236 GERGKTPLILAVEKKHLGLVQRLLEQEHIE------------------------------------------------IN  267 (337)
T ss_dssp             CGGGCCHHHHHHHTTCHHHHHHHHTSTTCC------------------------------------------------TT
T ss_pred             CCCCCCHHHHHHHhhhhHHHHHHHHhcCCc------------------------------------------------cc
Confidence            999999999999999999999988754333                                                56


Q ss_pred             ccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCC
Q 005790          339 AKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQ  412 (677)
Q Consensus       339 ~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~  412 (677)
                      .+|..|+||||+|+..| +.++|++||+ +|+|+|.+     +|||+|+..++.+    ++++|+++||++|..
T Consensus       268 ~~d~~G~TpL~~A~~~g-~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~~~~~----iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          268 DTDSDGKTALLLAVELK-LKKIAELLCK-RGASTDCG-----DLVMTARRNYDHS----LVKVLLSHGAKEDFH  330 (337)
T ss_dssp             CBCTTSCBHHHHHHHTT-CHHHHHHHHT-TSCSSTTC-----CHHHHHHHTTCHH----HHHHHHHTTCCC---
T ss_pred             CcCCCCCCHHHHHHHcC-CHHHHHHHHH-CCCCCCCC-----CHHHHHHHcCCHH----HHHHHHHCcCCCCCC
Confidence            67888899999999888 9999999999 89988764     5999999999877    689999999998863

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-42  Score=354.54  Aligned_cols=271  Identities=26%  Similarity=0.294  Sum_probs=244.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790          107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI  186 (677)
Q Consensus       107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~  186 (677)
                      .|.||||+|+..|+.++|++|++.++......+..|.||||+|+ ..|+.+++++|+++|++++..+..           
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~-----------   71 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV-QMSREDIVELLLRHGADPVLRKKN-----------   71 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT-----------
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCcccCCC-----------
Confidence            47899999999999999999999998655555888999999985 779999999999999998866544           


Q ss_pred             hhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCC--------
Q 005790          187 PSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST--------  258 (677)
Q Consensus       187 ~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~--------  258 (677)
                              |.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..        
T Consensus        72 --------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  142 (285)
T 1wdy_A           72 --------GATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE  142 (285)
T ss_dssp             --------CCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHH
T ss_pred             --------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHH
Confidence                    478999999999999999999999998 788999999999999999999999999999999887        


Q ss_pred             --CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhh
Q 005790          259 --DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI  336 (677)
Q Consensus       259 --d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~  336 (677)
                        +..|.||||+|+..|+.+++++|++..+.+++..+..|.||||+|+..++.      ....+++++|++.+     ++
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~------~~~~~i~~~Ll~~g-----~~  211 (285)
T 1wdy_A          143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD------SDVEAITHLLLDHG-----AD  211 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT------TTHHHHHHHHHHTT-----CC
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc------chHHHHHHHHHHcC-----CC
Confidence              778999999999999999999999984488999999999999999987653      22367788887765     55


Q ss_pred             hhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcc
Q 005790          337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDY  414 (677)
Q Consensus       337 in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~  414 (677)
                      ++.+|..|.||||+|+..+ +.++|++|++..|++++.+|..|+||||+|+..++.+    ++++|+++||+++.+|.
T Consensus       212 ~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~----i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          212 VNVRGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK----IAELLCKRGASTDCGDL  284 (285)
T ss_dssp             SSCCCTTSCCHHHHHHHTT-CHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHHSSCSCCSSC
T ss_pred             CCCcCCCCCcHHHHHHHcC-CHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHH----HHHHHHHcCCCCCcccc
Confidence            8899999999999999988 9999999999789999999999999999999999987    79999999999999874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=9.7e-42  Score=362.14  Aligned_cols=301  Identities=20%  Similarity=0.156  Sum_probs=246.9

Q ss_pred             CCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCC
Q 005790           98 GKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGG  177 (677)
Q Consensus        98 g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~  177 (677)
                      +++.+..+.++.++||.||..|+.+.|+.|+......++..+..|.||||+|| ..|+.+++++|+++|++++..+..  
T Consensus        14 ~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~--   90 (351)
T 3utm_A           14 SAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA-GYNRVRIVQLLLQHGADVHAKDKG--   90 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT--
T ss_pred             ceeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCccCCC--
Confidence            34455566677888888888888888888887766677777888888888875 668888888888888887766544  


Q ss_pred             cchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCC
Q 005790          178 ELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS  257 (677)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~  257 (677)
                                       |.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus        91 -----------------g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  152 (351)
T 3utm_A           91 -----------------GLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL  152 (351)
T ss_dssp             -----------------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             -----------------CCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence                             367888888888888888888888887 67788888888888888888888888888888888


Q ss_pred             CCCCCCcHHHHH---------------------HHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhh
Q 005790          258 TDHQGNTPLHIA---------------------AYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD  316 (677)
Q Consensus       258 ~d~~g~tpL~~A---------------------~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~  316 (677)
                      .+..|.||+++|                     +..++.+.+..++.... .....+..|.||||+|+..++       .
T Consensus       153 ~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~-------~  224 (351)
T 3utm_A          153 VNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLH-------P  224 (351)
T ss_dssp             CCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCC-TTCCCTTTCCCHHHHHHHCCS-------T
T ss_pred             ccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhc-ccccCCCCCCCHHHHHHHHhC-------c
Confidence            888888887664                     56677777777777663 344567889999999998643       2


Q ss_pred             HHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHH
Q 005790          317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSD  396 (677)
Q Consensus       317 ~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~  396 (677)
                      +..+++++|++.+     +++|.+|..|.||||+|+..+ +.++|++|++ .|+++|.+|..|+||||+|+..++.+   
T Consensus       225 ~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~---  294 (351)
T 3utm_A          225 KRKQVAELLLRKG-----ANVNEKNKDFMTPLHVAAERA-HNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQ---  294 (351)
T ss_dssp             THHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH---
T ss_pred             cHHHHHHHHHHcC-----CCcCCcCCCCCCHHHHHHHcC-CHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHH---
Confidence            5678888888766     458999999999999999988 9999999999 99999999999999999999999987   


Q ss_pred             HHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCC
Q 005790          397 ILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDV  452 (677)
Q Consensus       397 ~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~  452 (677)
                       ++++|+++|++++.+|..|+||+++|.              .+++++|.+.+...
T Consensus       295 -~v~~Ll~~gad~~~~~~~g~tal~~a~--------------~~~~~~l~~~~~~~  335 (351)
T 3utm_A          295 -TCRLLLSYGSDPSIISLQGFTAAQMGN--------------EAVQQILSESTPMR  335 (351)
T ss_dssp             -HHHHHHHTTCCTTCCCTTSCCHHHHSC--------------HHHHHHHHHC----
T ss_pred             -HHHHHHHcCCCCCCcCCCCCChhhhhh--------------HHHHHHHHhccccc
Confidence             799999999999999999999998862              45888888887654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.6e-41  Score=344.22  Aligned_cols=266  Identities=21%  Similarity=0.243  Sum_probs=240.0

Q ss_pred             CCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCC
Q 005790          141 YGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTD  220 (677)
Q Consensus       141 ~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~  220 (677)
                      .|.|||++|+ ..|+.+++++|+++|++++.....                  .|.||||+|+..|+.+++++|+++|++
T Consensus         4 ~g~~~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~------------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~   64 (285)
T 1wdy_A            4 EDNHLLIKAV-QNEDVDLVQQLLEGGANVNFQEEE------------------GGWTPLHNAVQMSREDIVELLLRHGAD   64 (285)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT------------------TCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccchHHHHHH-HcCCHHHHHHHHHcCCCcccccCC------------------CCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4678999985 779999999999999998866322                  246999999999999999999999999


Q ss_pred             ccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccc--------
Q 005790          221 VLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVK--------  292 (677)
Q Consensus       221 ~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~--------  292 (677)
                      + +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+ .+++..        
T Consensus        65 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~  142 (285)
T 1wdy_A           65 P-VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQE  142 (285)
T ss_dssp             T-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHH
T ss_pred             C-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC-CCcccccccHHHHH
Confidence            8 788999999999999999999999999999999999999999999999999999999999998 556665        


Q ss_pred             --CCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCc----HHHHHHHhh
Q 005790          293 --NTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVH----LELVQLLMS  366 (677)
Q Consensus       293 --~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~----~eiv~lLL~  366 (677)
                        +..|.||||+|+.          .++.+++++|++..    +.+++..|..|.||||+|+..+ +    .+++++|++
T Consensus       143 ~~~~~g~t~L~~A~~----------~~~~~~v~~Ll~~~----~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~i~~~Ll~  207 (285)
T 1wdy_A          143 RLRKGGATALMDAAE----------KGHVEVLKILLDEM----GADVNACDNMGRNALIHALLSS-DDSDVEAITHLLLD  207 (285)
T ss_dssp             HTTCCCCCHHHHHHH----------HTCHHHHHHHHHTS----CCCTTCCCTTSCCHHHHHHHCS-CTTTHHHHHHHHHH
T ss_pred             hhccCCCcHHHHHHH----------cCCHHHHHHHHHhc----CCCCCccCCCCCCHHHHHHHcc-ccchHHHHHHHHHH
Confidence              7889999999999          45667777777652    2458899999999999999988 7    899999999


Q ss_pred             CCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHH-cCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHH
Q 005790          367 APSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLIS-AGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIF  445 (677)
Q Consensus       367 ~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~-~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~L  445 (677)
                       .|+++|.+|..|.||||+|+..++.+    ++++|++ .|++++.+|..|+||||+|+....          .+++++|
T Consensus       208 -~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~----------~~i~~~L  272 (285)
T 1wdy_A          208 -HGADVNVRGERGKTPLILAVEKKHLG----LVQRLLEQEHIEINDTDSDGKTALLLAVELKL----------KKIAELL  272 (285)
T ss_dssp             -TTCCSSCCCTTSCCHHHHHHHTTCHH----HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC----------HHHHHHH
T ss_pred             -cCCCCCCcCCCCCcHHHHHHHcCCHH----HHHHHHhccCCCccccCCCCCcHHHHHHHcCc----------HHHHHHH
Confidence             99999999999999999999999987    6889998 899999999999999999998533          8899999


Q ss_pred             HHcCCCCCCCCC
Q 005790          446 LYTGIDVSSDGN  457 (677)
Q Consensus       446 L~~Gad~~~~~~  457 (677)
                      +++||+++.+|.
T Consensus       273 l~~Ga~~~~~d~  284 (285)
T 1wdy_A          273 CKRGASTDCGDL  284 (285)
T ss_dssp             HHHSSCSCCSSC
T ss_pred             HHcCCCCCcccc
Confidence            999999998773

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=8.8e-40  Score=347.01  Aligned_cols=320  Identities=21%  Similarity=0.207  Sum_probs=242.3

Q ss_pred             ccCcHHHHHHHcCCHHHHHHHHHh-cCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchh
Q 005790           25 WYASPIDWAAANGHYDLVRELLRI-DGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLI  103 (677)
Q Consensus        25 ~g~TpL~~Aa~~G~~diV~~LL~~-ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~  103 (677)
                      ++.|+||.||+.|+.++|+.||.. +++++.            ....+.||||+|+..++.+++++|++    .|++++.
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~------------~d~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~   86 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHA------------SDGRKSTPLHLAAGYNRVRIVQLLLQ----HGADVHA   86 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCC------------SSTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTC
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCccc------------CCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCc
Confidence            467999999999999999999975 666653            35568999999999999999999999    8999999


Q ss_pred             hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790          104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI  183 (677)
Q Consensus       104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~  183 (677)
                      +|..|.||||+|+..|+.++|++|+++|+ .++..+..|.||||+|+ ..|+.+++++|+++|++++..+..+.......
T Consensus        87 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a  164 (351)
T 3utm_A           87 KDKGGLVPLHNACSYGHYEVTELLLKHGA-CVNAMDLWQFTPLHEAA-SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA  164 (351)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             cCCCCCcHHHHHHHCCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCccccCCCCcchHHH
Confidence            99999999999999999999999999987 56778899999999995 77999999999999999998877665433322


Q ss_pred             hcch--hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHh---CCHHHHHHHHhcCCCCCCC
Q 005790          184 EEIP--SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGR---GQVEVVKDLIASFDIINST  258 (677)
Q Consensus       184 ~~~~--~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~---g~~eivk~Ll~~ga~in~~  258 (677)
                      ....  ..........+++.++..++.+.++.++..+... ...+..|.||||+|+..   +..+++++|+++|++++..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~  243 (351)
T 3utm_A          165 PTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK  243 (351)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCC
T ss_pred             hhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCc
Confidence            1111  1112223345677777778888887777776544 44667778888888887   4577888888888888888


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhh
Q 005790          259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIIN  338 (677)
Q Consensus       259 d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in  338 (677)
                      +..|.||||+|+..|+.+++++|++.| ++                                                +|
T Consensus       244 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~------------------------------------------------~n  274 (351)
T 3utm_A          244 NKDFMTPLHVAAERAHNDVMEVLHKHG-AK------------------------------------------------MN  274 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTT-CC------------------------------------------------TT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCC-CC------------------------------------------------CC
Confidence            888888888888888888888888776 22                                                56


Q ss_pred             ccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCc
Q 005790          339 AKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARR  418 (677)
Q Consensus       339 ~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T  418 (677)
                      .+|..|.||||+|+..+ +.++|++|++ .|+|++.+|..|+|||++|..        .++++|.+.+..   ....+.+
T Consensus       275 ~~d~~g~t~L~~A~~~~-~~~~v~~Ll~-~gad~~~~~~~g~tal~~a~~--------~~~~~l~~~~~~---~~~~~~~  341 (351)
T 3utm_A          275 ALDSLGQTALHRAALAG-HLQTCRLLLS-YGSDPSIISLQGFTAAQMGNE--------AVQQILSESTPM---RTSDVDY  341 (351)
T ss_dssp             CCCTTSCCHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHSCH--------HHHHHHHHC-------------
T ss_pred             CcCCCCCCHHHHHHHcC-cHHHHHHHHH-cCCCCCCcCCCCCChhhhhhH--------HHHHHHHhcccc---ccCccee
Confidence            66778888888888877 8888888888 888888888888888888722        256666666543   3345567


Q ss_pred             hHHHHHH
Q 005790          419 AIASHIK  425 (677)
Q Consensus       419 ~L~~al~  425 (677)
                      ++..|++
T Consensus       342 ~l~~A~~  348 (351)
T 3utm_A          342 RLLEASK  348 (351)
T ss_dssp             -------
T ss_pred             ehhhhhc
Confidence            7777665

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.6e-41  Score=362.48  Aligned_cols=320  Identities=17%  Similarity=0.109  Sum_probs=209.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcC
Q 005790           27 ASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAG  106 (677)
Q Consensus        27 ~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~  106 (677)
                      ..+|+.|+..|+.+.++.++++...+.               | ..+++..+...+...++++++.         ...+.
T Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~g~~~~~~~~~~---------~~~~~   92 (373)
T 2fo1_E           38 QHSLLEASYDGYIKRQRNELQHYSLYP---------------N-PQGYGNGNDFLGDFNHTNLQIP---------TEPEP   92 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCCccccchhhhhhhhcccc---------------C-ccccCCCCCccccccccccccc---------cCCCC
Confidence            377889999999999999998765431               1 1233455666677777777665         24577


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCCHHHHHHHhcCCHHHHHHHH--------hcCCCcccccccCC
Q 005790          107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEG-EYGVTDIFYAAARSKNCDVFRLIY--------DFAVSPRFLTAKGG  177 (677)
Q Consensus       107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~-~~g~tpL~~AA~~~g~~evv~lLl--------~~Gad~~~~~~~~~  177 (677)
                      .|.||||+|+..++ +++++|+..   .++..+ ..|.||||+|| ..|+.+++++|+        ++|++++..+..  
T Consensus        93 ~g~t~L~~Aa~~~~-~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa-~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~--  165 (373)
T 2fo1_E           93 ESPIKLHTEAAGSY-AITEPITRE---SVNIIDPRHNRTVLHWIA-SNSSAEKSEDLIVHEAKECIAAGADVNAMDCD--  165 (373)
T ss_dssp             -CCCHHHHHHHSSS-CCCSCCSTT---TTTTCCCSSCCCHHHHHH-CTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTT--
T ss_pred             CCccHHHHHhcCCc-hHHHHhccc---cccccCCcCCCCHHHHHH-HCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCC--
Confidence            89999999999654 888888753   345556 78999999985 779988887776        678777765544  


Q ss_pred             cchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcC---CC
Q 005790          178 ELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASF---DI  254 (677)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~g---a~  254 (677)
                                       |.||||+|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|   ++
T Consensus       166 -----------------g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  227 (373)
T 2fo1_E          166 -----------------ENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD  227 (373)
T ss_dssp             -----------------SCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT
T ss_pred             -----------------CCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC
Confidence                             367888888888888888888888887 667778888888888888888888888877   67


Q ss_pred             CCCCCCCCCcHHHHHHHcC---CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHccccc
Q 005790          255 INSTDHQGNTPLHIAAYRG---QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIF  331 (677)
Q Consensus       255 in~~d~~g~tpL~~A~~~g---~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~  331 (677)
                      ++..|..|.||||+|+..+   +.+++++|++.| .+++..+.                                     
T Consensus       228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g-~~~~~~~~-------------------------------------  269 (373)
T 2fo1_E          228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG-AKVDYDGA-------------------------------------  269 (373)
T ss_dssp             TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHT-CCSSCCSG-------------------------------------
T ss_pred             hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCC-CCcccccc-------------------------------------
Confidence            8888888888888888877   778888888877 33443211                                     


Q ss_pred             chhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCC
Q 005790          332 NMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGC  411 (677)
Q Consensus       332 ~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~  411 (677)
                         ...+..|..|.||||+|+..+ +.++|++|++..|+++|.+|..|.||||+|+..|+.+    ++++|+++|++++.
T Consensus       270 ---~~~~~~d~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~----iv~~Ll~~gad~~~  341 (373)
T 2fo1_E          270 ---ARKDSEKYKGRTALHYAAQVS-NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE----VVMYLIQQGASVEA  341 (373)
T ss_dssp             ---GGTSSSSCCCCCTHHHHHSSC-CHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCSSC
T ss_pred             ---cccCcccccCCCHHHHHHHhC-CHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCccC
Confidence               113456788999999999988 9999999998445999999999999999999999877    68888999999999


Q ss_pred             CcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCC
Q 005790          412 QDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDV  452 (677)
Q Consensus       412 ~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~  452 (677)
                      +|..|+|||++|+....          .+++++|+++|++.
T Consensus       342 ~d~~g~t~l~~A~~~g~----------~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          342 VDATDHTARQLAQANNH----------HNIVDIFDRCRPER  372 (373)
T ss_dssp             CCSSSCCHHHHHHHTTC----------HHHHHHHHTTC---
T ss_pred             CCCCCCCHHHHHHHcCC----------HHHHHHHHhcCccc
Confidence            99999999999888533          88999999998863

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.4e-40  Score=340.12  Aligned_cols=260  Identities=20%  Similarity=0.183  Sum_probs=176.6

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHHcCC----------CccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccc
Q 005790          105 AGYGGWLLYTAASAGDLGFVKQLLDKNP----------LLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTA  174 (677)
Q Consensus       105 d~~G~t~L~~Aa~~g~~eivk~LL~~g~----------~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~  174 (677)
                      ..+|.|+||+|+..|+.+.+..++..++          ...+..+..|+||||+|| ..|+.+++++|+++|++++..+.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa-~~g~~~~v~~Ll~~g~~~~~~~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAA-IHGHQLSLRNLISQGWAVNIITA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHH-HTTCHHHHHHHHHTTCCSCEECT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHH-HcCCHHHHHHHHHCCCCCCCcCC
Confidence            3468899999999999877777766542          234557788889998885 66889999999998888876654


Q ss_pred             cCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 005790          175 KGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI  254 (677)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~  254 (677)
                      .                   |.||||+|+..|+.++|++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++
T Consensus        91 ~-------------------g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  150 (285)
T 3d9h_A           91 D-------------------HVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS  150 (285)
T ss_dssp             T-------------------CCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             C-------------------CCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC
Confidence            4                   368899999999999999999998888 77888889999999999999999999998888


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchh
Q 005790          255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNME  334 (677)
Q Consensus       255 in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~  334 (677)
                      ++..+ .|.||||+|+..|+.+++++|++.+. +                                              
T Consensus       151 ~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~-~----------------------------------------------  182 (285)
T 3d9h_A          151 VQPES-DLASPIHEAARRGHVECVNSLIAYGG-N----------------------------------------------  182 (285)
T ss_dssp             SSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTC-C----------------------------------------------
T ss_pred             CCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCC-C----------------------------------------------
Confidence            87644 48899999999999999988888773 3                                              


Q ss_pred             hhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcc
Q 005790          335 DIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDY  414 (677)
Q Consensus       335 ~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~  414 (677)
                        ++.+|..|.||||+|+..+ +.++|++|++ .|+++|. |..|.||||+|+..++.+    ++++|+++|++++.+|.
T Consensus       183 --~~~~d~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~~----~v~~Ll~~gad~~~~d~  253 (285)
T 3d9h_A          183 --IDHKISHLGTPLYLACENQ-QRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASEE----LACLLMDFGADTQAKNA  253 (285)
T ss_dssp             --TTCCBTTTBCHHHHHHHTT-CHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCT
T ss_pred             --CCCcCCCCCCHHHHHHHcC-cHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCC
Confidence              4445667777777777766 7777777777 7777774 677777777777777765    57777777777777777


Q ss_pred             cCCchHHHHHHHhCCCCCCCCccchhhHHHHHHc-CCCCCC
Q 005790          415 SARRAIASHIKMLGNGSSPGTSFRISDTEIFLYT-GIDVSS  454 (677)
Q Consensus       415 ~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~-Gad~~~  454 (677)
                      .|+|||++|+..            .+++++|+++ |+++..
T Consensus       254 ~g~t~l~~A~~~------------~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          254 EGKRPVELVPPE------------SPLAQLFLEREGASLPK  282 (285)
T ss_dssp             TSCCGGGGSCTT------------SHHHHHHHHHC------
T ss_pred             CCCCHHHHhcCc------------cHHHHHHHHhhccCCCC
Confidence            777777776521            4577777776 776643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.4e-39  Score=335.78  Aligned_cols=268  Identities=19%  Similarity=0.174  Sum_probs=201.1

Q ss_pred             ccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhh
Q 005790           25 WYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIR  104 (677)
Q Consensus        25 ~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~  104 (677)
                      +|.|+||+||..|+.+.+..++..+..-...                .                .+      -....+.+
T Consensus        14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~----------------~----------------~l------~~~~~~~~   55 (285)
T 3d9h_A           14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPG----------------I----------------RL------LSNPLMGD   55 (285)
T ss_dssp             ----------------------------CCS----------------E----------------EC------CCCTTCSS
T ss_pred             HHHHHHHHHhhcCCCCCcccCCCCccccccc----------------h----------------hh------hhCcccCC
Confidence            4789999999999988888888765431000                0                00      01124557


Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhh
Q 005790          105 AGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIE  184 (677)
Q Consensus       105 d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~  184 (677)
                      |..|.||||+||..|+.++|++|++.++ +++..+..|.||||+|| ..|+.+++++|+++|++++..+..         
T Consensus        56 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~~~~~~~~---------  124 (285)
T 3d9h_A           56 AVSDWSPMHEAAIHGHQLSLRNLISQGW-AVNIITADHVSPLHEAC-LGGHLSCVKILLKHGAQVNGVTAD---------  124 (285)
T ss_dssp             SCCSCCHHHHHHHTTCHHHHHHHHHTTC-CSCEECTTCCCHHHHHH-HTTCHHHHHHHHHTTCCSSCCCTT---------
T ss_pred             CccCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHH-HCCcHHHHHHHHHCCCCCCCCCCC---------
Confidence            8899999999999999999999999986 57778899999999995 779999999999999998876554         


Q ss_pred             cchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCc
Q 005790          185 EIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNT  264 (677)
Q Consensus       185 ~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~t  264 (677)
                                |.||||+|+..|+.+++++|+++|+++ + .+..|.||||+|+..|+.+++++|+++|++++..|..|.|
T Consensus       125 ----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t  192 (285)
T 3d9h_A          125 ----------WHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGT  192 (285)
T ss_dssp             ----------CCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBC
T ss_pred             ----------CCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence                      378999999999999999999999998 4 3445999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCC
Q 005790          265 PLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDG  344 (677)
Q Consensus       265 pL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G  344 (677)
                      |||+|+..|+.+++++|++.|..                                                 ++ .+..|
T Consensus       193 ~L~~A~~~~~~~~v~~Ll~~ga~-------------------------------------------------~~-~~~~g  222 (285)
T 3d9h_A          193 PLYLACENQQRACVKKLLESGAD-------------------------------------------------VN-QGKGQ  222 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-------------------------------------------------TT-CCBTT
T ss_pred             HHHHHHHcCcHHHHHHHHHCCCC-------------------------------------------------CC-CCCCC
Confidence            99999999999999999998832                                                 23 25678


Q ss_pred             chHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHc-CCCCCC
Q 005790          345 RTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISA-GGIFGC  411 (677)
Q Consensus       345 ~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~-Gadin~  411 (677)
                      .||||+|+..+ +.++|++|++ .|+|++.+|..|+||||+|+..  .+    ++++|+++ |+++..
T Consensus       223 ~t~L~~A~~~~-~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~--~~----~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          223 DSPLHAVVRTA-SEELACLLMD-FGADTQAKNAEGKRPVELVPPE--SP----LAQLFLEREGASLPK  282 (285)
T ss_dssp             BCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTT--SH----HHHHHHHHC------
T ss_pred             CCHHHHHHHcC-CHHHHHHHHH-CCCCCCCcCCCCCCHHHHhcCc--cH----HHHHHHHhhccCCCC
Confidence            89999999988 9999999999 8999999999999999999943  33    68888887 777654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.3e-40  Score=354.84  Aligned_cols=284  Identities=16%  Similarity=0.136  Sum_probs=220.5

Q ss_pred             ccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhh
Q 005790           25 WYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIR  104 (677)
Q Consensus        25 ~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~  104 (677)
                      |-++++.-|...|+++++++++....                 ...+.++||.|+.++. +++++|+.      .+++..
T Consensus        65 ~~~~~~~~~~~~g~~~~~~~~~~~~~-----------------~~~g~t~L~~Aa~~~~-~~~~~L~~------~~~n~~  120 (373)
T 2fo1_E           65 NPQGYGNGNDFLGDFNHTNLQIPTEP-----------------EPESPIKLHTEAAGSY-AITEPITR------ESVNII  120 (373)
T ss_dssp             ----------------------------------------------CCCHHHHHHHSSS-CCCSCCST------TTTTTC
T ss_pred             CccccCCCCCccccccccccccccCC-----------------CCCCccHHHHHhcCCc-hHHHHhcc------cccccc
Confidence            34567788899999999999987543                 3468999999999765 55555543      467778


Q ss_pred             c-CCCChHHHHHHHcCCHHHHHHHH--------HcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCccccccc
Q 005790          105 A-GYGGWLLYTAASAGDLGFVKQLL--------DKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAK  175 (677)
Q Consensus       105 d-~~G~t~L~~Aa~~g~~eivk~LL--------~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~  175 (677)
                      | ..|.||||+||..|+.++|++|+        +.|+ +++..|..|.||||+|| ..|+.++|++|+++|++++..+..
T Consensus       121 d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga-~vn~~d~~g~TpL~~A~-~~g~~~iv~~Ll~~ga~~~~~~~~  198 (373)
T 2fo1_E          121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-DVNAMDCDENTPLMLAV-LARRRRLVAYLMKAGADPTIYNKS  198 (373)
T ss_dssp             CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC-CTTCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             CCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCC-CCcCCCCCCCCHHHHHH-HcChHHHHHHHHHCCCCCcccCCC
Confidence            8 78999999999999999888887        6675 67788999999999986 669999999999999999876554


Q ss_pred             CCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcC---CCccccCCCCCCcHHHHHHHhC---CHHHHHHHH
Q 005790          176 GGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENC---TDVLTYRDKQGSTILHAAAGRG---QVEVVKDLI  249 (677)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~g---a~~~~~~d~~g~TpL~~A~~~g---~~eivk~Ll  249 (677)
                                         |.||||+|+..|+.+++++|++++   +++ +..+..|.||||+|+..+   +.+++++|+
T Consensus       199 -------------------g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll  258 (373)
T 2fo1_E          199 -------------------ERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLV  258 (373)
T ss_dssp             -------------------CCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred             -------------------CCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHH
Confidence                               378999999999999999999998   677 778999999999999998   899999999


Q ss_pred             hcCCCCCC--------CCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHH
Q 005790          250 ASFDIINS--------TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKL  321 (677)
Q Consensus       250 ~~ga~in~--------~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~ei  321 (677)
                      ++|++++.        .|..|.||||+|+..|+.++|++|++.++.+                                 
T Consensus       259 ~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---------------------------------  305 (373)
T 2fo1_E          259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN---------------------------------  305 (373)
T ss_dssp             HHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC---------------------------------
T ss_pred             HCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC---------------------------------
Confidence            99999886        5678999999999999999999999887443                                 


Q ss_pred             HHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHH
Q 005790          322 MKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH  401 (677)
Q Consensus       322 v~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~  401 (677)
                                     ++.+|..|.||||+|+..+ +.++|++|++ .|++++.+|..|.||||+|+..++.+    ++++
T Consensus       306 ---------------~n~~d~~g~TpL~~A~~~g-~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~~----iv~~  364 (373)
T 2fo1_E          306 ---------------KDKQDEDGKTPIMLAAQEG-RIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHN----IVDI  364 (373)
T ss_dssp             ---------------TTCCCTTCCCHHHHHHHHT-CHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHH----HHHH
T ss_pred             ---------------ccCcCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCHH----HHHH
Confidence                           5556778888888888888 9999999999 89999999999999999999999877    6888


Q ss_pred             HHHcCCC
Q 005790          402 LISAGGI  408 (677)
Q Consensus       402 Ll~~Gad  408 (677)
                      |+++|++
T Consensus       365 Ll~~~a~  371 (373)
T 2fo1_E          365 FDRCRPE  371 (373)
T ss_dssp             HHTTC--
T ss_pred             HHhcCcc
Confidence            8888875

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.5e-39  Score=348.85  Aligned_cols=257  Identities=16%  Similarity=0.163  Sum_probs=214.5

Q ss_pred             CCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccC
Q 005790           97 NGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKG  176 (677)
Q Consensus        97 ~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~  176 (677)
                      .+.+++..|..|.||||+||..|+.++|++|++.|+ +++..+..|.||||+|| ..|+.++|++|+++|++++..    
T Consensus         9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~----   82 (364)
T 3ljn_A            9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGV-SPTIQNRFGCTALHLAC-KFGCVDTAKYLASVGEVHSLW----   82 (364)
T ss_dssp             -------CCHHHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHH-HHCCHHHHHHHHHHCCCCCCB----
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCcHHHHHH-HcCCHHHHHHHHHCCCCcccc----
Confidence            456677788899999999999999999999999986 56778899999999986 669999999999999966532    


Q ss_pred             CcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhc----CCCcccc-----------------CCCCCCcHHHH
Q 005790          177 GELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLEN----CTDVLTY-----------------RDKQGSTILHA  235 (677)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~----ga~~~~~-----------------~d~~g~TpL~~  235 (677)
                                       .|.||||+|+..|+.++|++|+++    |+++ +.                 .+..|.||||+
T Consensus        83 -----------------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  144 (364)
T 3ljn_A           83 -----------------HGQKPIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHW  144 (364)
T ss_dssp             -----------------TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHH
T ss_pred             -----------------CCCCHHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHH
Confidence                             146899999999999999999998    7766 44                 77899999999


Q ss_pred             HHHhC--CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC----ccccCCCCCchhhhhhhcCch
Q 005790          236 AAGRG--QVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM----ISVKNTSGETFLHSAVSGFQT  309 (677)
Q Consensus       236 A~~~g--~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~----~~~~~~~g~tpLh~A~~~~~~  309 (677)
                      |+..|  +.++|++|+++|++++..|..|.||||+|+..|+.+++++|++.++..    ++..+..|.||||+|+..   
T Consensus       145 A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~---  221 (364)
T 3ljn_A          145 CVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI---  221 (364)
T ss_dssp             HHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTT---
T ss_pred             HHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHc---
Confidence            99999  999999999999999999999999999999999999999999998432    788888899999999884   


Q ss_pred             HHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccc------------cCC
Q 005790          310 YAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV------------RDN  377 (677)
Q Consensus       310 ~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~------------~d~  377 (677)
                             ++.+++++|++.+     ++++.+|..|.||||+|+..+ +.++|++|++ .|++++.            .+.
T Consensus       222 -------g~~~~v~~Ll~~g-----ad~~~~d~~g~tpL~~A~~~g-~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~  287 (364)
T 3ljn_A          222 -------NWEDVAMRFVEMG-----IDVNMEDNEHTVPLYLSVRAA-MVLLTKELLQ-KTDVFLIQACPYHNGTTVLPDR  287 (364)
T ss_dssp             -------TCHHHHHHHHTTT-----CCTTCCCTTSCCHHHHHHHTC-CHHHHHHHHH-HSCHHHHHTCTTBSSSSBCGGG
T ss_pred             -------CCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHhC-hHHHHHHHHH-cCCchhhhcCcccCcccccccc
Confidence                   4556666776654     568888889999999999888 8999999998 7877644            355


Q ss_pred             CCCcHHHHHhhCCCCch
Q 005790          378 DGMTTLDLLKQRPQSAS  394 (677)
Q Consensus       378 ~G~TpL~~A~~~~~~~~  394 (677)
                      .++|||++|+..++.+.
T Consensus       288 ~~~~~l~~aa~~~~~~~  304 (364)
T 3ljn_A          288 VVWLDFVPAAADPSKQE  304 (364)
T ss_dssp             CCCCTTSCSSCCHHHHH
T ss_pred             cccccchhhhhccCHHH
Confidence            77888888888887653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.3e-38  Score=322.23  Aligned_cols=232  Identities=21%  Similarity=0.231  Sum_probs=151.8

Q ss_pred             CCchhhcCCCChHHHHHHHcC-------------CHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhc
Q 005790           99 KNSLIRAGYGGWLLYTAASAG-------------DLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDF  165 (677)
Q Consensus        99 ~~~~~~d~~G~t~L~~Aa~~g-------------~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~  165 (677)
                      .|+|.+|..|.||||+|+..|             +.++|++|++.|+......+..|.||||+|| ..|+.+++++|+++
T Consensus         1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~   79 (253)
T 1yyh_A            1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAA-RYSRSDAAKRLLEA   79 (253)
T ss_dssp             ---------------------------------------------------CCCTTSCCHHHHHH-HTTCHHHHHHHHHT
T ss_pred             CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHH-HcCCHHHHHHHHHc
Confidence            367889999999999999987             7788888888777666666777888888774 56788888888888


Q ss_pred             CCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHH
Q 005790          166 AVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVV  245 (677)
Q Consensus       166 Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eiv  245 (677)
                      |++++..+..                   |.||||+|+..|+.+++++|+++|+...+..+..|.||||+|+..|+.+++
T Consensus        80 g~~~~~~~~~-------------------g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  140 (253)
T 1yyh_A           80 SADANIQDNM-------------------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML  140 (253)
T ss_dssp             TCCTTCCCTT-------------------SCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHH
T ss_pred             CCCCCCCCCC-------------------CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHH
Confidence            8777665433                   357888888888888888888877733366777788888888888888888


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHH
Q 005790          246 KDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQL  325 (677)
Q Consensus       246 k~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~L  325 (677)
                      ++|+++|++++..|..|.||||+|+..|+.+++++|++.|+ +                                     
T Consensus       141 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~-------------------------------------  182 (253)
T 1yyh_A          141 EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA-N-------------------------------------  182 (253)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-C-------------------------------------
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-C-------------------------------------
Confidence            88888888888777778888888888888888888877762 2                                     


Q ss_pred             HcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHc
Q 005790          326 ASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISA  405 (677)
Q Consensus       326 l~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~  405 (677)
                                 ++.+|..|.||||+|+..+ +.+++++|++ .|++++.+|..|.|||++|+..|+.+    ++++|...
T Consensus       183 -----------~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~----i~~~l~~~  245 (253)
T 1yyh_A          183 -----------KDMQNNREETPLFLAAREG-SYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHD----IVRLLDLE  245 (253)
T ss_dssp             -----------TTCCCTTSCCHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHC-
T ss_pred             -----------CCCcCCCCCCHHHHHHHCC-CHHHHHHHHH-cCCCccccccCCCCHHHHHHHcCCHH----HHHHHHHH
Confidence                       5566788899999999888 9999999999 89999999999999999999999988    46665543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.8e-37  Score=309.08  Aligned_cols=234  Identities=25%  Similarity=0.269  Sum_probs=205.2

Q ss_pred             CCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCc
Q 005790           99 KNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGE  178 (677)
Q Consensus        99 ~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~  178 (677)
                      .+++..|..|.||||+||..|+.++|++|+++|+ +++..+..|.||||+|+ ..|+.+++++|+++|++++..+..   
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~---   76 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA-NIDTCSEDQRTPLMEAA-ENNHLEAVKYLIKAGALVDPKDAE---   76 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHH-HTTCHHHHHHHHTTTCCCCCCCTT---
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCC-CcCccCCCCCCHHHHHH-HhCCHHHHHHHHhCCCCCCCCCCC---
Confidence            4677788899999999999999999999999986 56677888999999985 679999999999999988765543   


Q ss_pred             chhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcC-CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCC
Q 005790          179 LEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENC-TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS  257 (677)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~g-a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~  257 (677)
                                      |.||||+|+..|+.+++++|++.| .++ +..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus        77 ----------------g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  139 (237)
T 3b7b_A           77 ----------------GSTCLHLAAKKGHYEVVQYLLSNGQMDV-NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI  139 (237)
T ss_dssp             ----------------SCCHHHHHHHTTCHHHHHHHHTTTCCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             ----------------CCcHHHHHHHcCCHHHHHHHHhCCCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence                            368999999999999999999998 455 77888999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhh
Q 005790          258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDII  337 (677)
Q Consensus       258 ~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~i  337 (677)
                      .+..|.||||+|+..|+.+++++|++.|..                                                 +
T Consensus       140 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------------------------------------------------~  170 (237)
T 3b7b_A          140 RDNEENICLHWAAFSGCVDIAEILLAAKCD-------------------------------------------------L  170 (237)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-------------------------------------------------T
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-------------------------------------------------C
Confidence            999999999999999999999999987732                                                 5


Q ss_pred             hccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHc
Q 005790          338 NAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISA  405 (677)
Q Consensus       338 n~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~  405 (677)
                      +.+|..|.||||+|+..+ +.+++++|++ .|+|++.+|..|.||||+|+..++...+..+++.|.+.
T Consensus       171 ~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds  236 (237)
T 3b7b_A          171 HAVNIHGDSPLHIAAREN-RYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS  236 (237)
T ss_dssp             TCCCTTCCCHHHHHHHTT-CHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred             CCcCCCCCCHHHHHHHhC-CHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            566788999999999988 9999999999 99999999999999999999999988888888887653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.3e-38  Score=339.64  Aligned_cols=283  Identities=20%  Similarity=0.131  Sum_probs=227.3

Q ss_pred             cccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchh
Q 005790           24 WWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLI  103 (677)
Q Consensus        24 ~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~  103 (677)
                      ..|.||||+||..|+.++|++||++|+++                                                 +.
T Consensus        18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-------------------------------------------------~~   48 (364)
T 3ljn_A           18 DENMEKIHVAARKGQTDEVRRLIETGVSP-------------------------------------------------TI   48 (364)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHTTCCT-------------------------------------------------TC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------------------------------------------------cc
Confidence            34779999999999999999999876654                                                 45


Q ss_pred             hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhc----CCCcccccccCCcc
Q 005790          104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDF----AVSPRFLTAKGGEL  179 (677)
Q Consensus       104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~----Gad~~~~~~~~~~~  179 (677)
                      +|..|.||||+||..|+.++|++|++.++..   .+..|.||||+|+ ..|+.+++++|+++    |++++.........
T Consensus        49 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  124 (364)
T 3ljn_A           49 QNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAV-MANKTDLVVALVEGAKERGQMPESLLNECDER  124 (364)
T ss_dssp             CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHH-HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHH-HcCCHHHHHHHHHhccccCCCHHHHHhhcchH
Confidence            6778999999999999999999999999832   3357899999985 77999999999999    88777532221110


Q ss_pred             hhhhhcchhhhhhhccchHHHHHHhcC--CHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC---
Q 005790          180 EEHIEEIPSVYKWEMMNRAVHAAARGG--NLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI---  254 (677)
Q Consensus       180 ~~~~~~~~~~~~~~~~~t~Lh~A~~~g--~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~---  254 (677)
                        ..........+..|.||||+|+..|  +.++|++|+++|+++ +..|..|.||||+|+..|+.++|++|+++|++   
T Consensus       125 --~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  201 (364)
T 3ljn_A          125 --EVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS  201 (364)
T ss_dssp             --CEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSS
T ss_pred             --hhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Confidence              0111222335556789999999999  999999999999999 88999999999999999999999999999999   


Q ss_pred             --CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccc
Q 005790          255 --INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFN  332 (677)
Q Consensus       255 --in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~  332 (677)
                        ++..|..|.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..+          +.+++++|++.+...
T Consensus       202 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~g----------~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          202 LRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHTVPLYLSVRAA----------MVLLTKELLQKTDVF  270 (364)
T ss_dssp             CCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTC----------CHHHHHHHHHHSCHH
T ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhC----------hHHHHHHHHHcCCch
Confidence              9999999999999999999999999999998 779999999999999999955          455566666554110


Q ss_pred             -------hhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCcccc
Q 005790          333 -------MEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVR  375 (677)
Q Consensus       333 -------~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~  375 (677)
                             ........+..+.|||++|+..+ +.+.|..||. .+++....
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~-~~~~v~~ll~-~~~~~~~~  318 (364)
T 3ljn_A          271 LIQACPYHNGTTVLPDRVVWLDFVPAAADP-SKQEVLQLLQ-EKLDEVVR  318 (364)
T ss_dssp             HHHTCTTBSSSSBCGGGCCCCTTSCSSCCH-HHHHHHHHHH-HHHHHHHT
T ss_pred             hhhcCcccCcccccccccccccchhhhhcc-CHHHHHHHHH-HHHHHHhh
Confidence                   00011225667899999999988 7777777777 56554443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=7.3e-37  Score=305.79  Aligned_cols=228  Identities=21%  Similarity=0.267  Sum_probs=204.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      ..+.+|||.|+..|+.++|++|++.++..++..+..|.||||+|+ ..|+.+++++|+++|++++..+..          
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~----------   72 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWAC-SAGHTEIVEFLLQLGVPVNDKDDA----------   72 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCCSCCCCTT----------
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHH-HcCcHHHHHHHHHhCCCCCCcCCC----------
Confidence            457899999999999999999999988778888999999999985 669999999999999988866544          


Q ss_pred             chhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 005790          186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP  265 (677)
Q Consensus       186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp  265 (677)
                               |.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus        73 ---------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  142 (231)
T 3aji_A           73 ---------GWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA  142 (231)
T ss_dssp             ---------SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ---------CCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence                     478999999999999999999999998 7889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCc
Q 005790          266 LHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGR  345 (677)
Q Consensus       266 L~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~  345 (677)
                      ||+|+..|+.+++++|++.+. +                                                ++.+|..|.
T Consensus       143 L~~A~~~~~~~~v~~Ll~~g~-~------------------------------------------------~~~~~~~g~  173 (231)
T 3aji_A          143 MHRAAAKGNLKMVHILLFYKA-S------------------------------------------------TNIQDTEGN  173 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC-C------------------------------------------------SCCCCTTSC
T ss_pred             HHHHHHcCCHHHHHHHHhcCC-C------------------------------------------------ccccCCCCC
Confidence            999999999999999998873 2                                                455677889


Q ss_pred             hHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCC
Q 005790          346 TALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIF  409 (677)
Q Consensus       346 TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadi  409 (677)
                      ||||+|+..+ +.+++++|++ .|++++.+|..|.|||++|+..++.+    ++++|+++|+++
T Consensus       174 t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~----i~~lL~~~~a~i  231 (231)
T 3aji_A          174 TPLHLACDEE-RVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGLGLI----LKRLAEGEEASM  231 (231)
T ss_dssp             CHHHHHHHTT-CHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHHHHHH----HHHHHHHHHHCC
T ss_pred             CHHHHHHHCC-CHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhhHHHH----HHHHHccccccC
Confidence            9999999988 9999999999 89999999999999999998877765    688888887764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.2e-37  Score=317.41  Aligned_cols=253  Identities=21%  Similarity=0.213  Sum_probs=191.7

Q ss_pred             hhhccchHHHHHHhcCCHHHHHHHHhcCCCc--cccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 005790          191 KWEMMNRAVHAAARGGNLKILKELLENCTDV--LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHI  268 (677)
Q Consensus       191 ~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~--~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~  268 (677)
                      .+..|.||||+|+..|+.++|++|+++|++.  .+..+..|+||||+|+..|+.++|++|+++|++++..+..|.||||+
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~   84 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            3455789999999999999999999999982  37889999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhCCCCc------------cccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhh
Q 005790          269 AAYRGQPAVVEALILASPSMI------------SVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI  336 (677)
Q Consensus       269 A~~~g~~~iv~~LL~~g~~~~------------~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~  336 (677)
                      |+..|+.+++++|++.++...            ......+.++++.++....         .......+     ...+.+
T Consensus        85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-----~~~~~~  150 (282)
T 1oy3_D           85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP---------ENEEEPRD-----EDWRLQ  150 (282)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC--------------------------------------------C-----CCGGGG
T ss_pred             HHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcccccc---------chhhhhhh-----hhhhhc
Confidence            999999999999999884321            1122334455555554211         11112222     344567


Q ss_pred             hhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCC-CCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCccc
Q 005790          337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDND-GMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYS  415 (677)
Q Consensus       337 in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~-G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~  415 (677)
                      ++.++..|.||||+|+..+ +.++|++|++ .|++++.++.. |+||||+|+..++.+    ++++|+++|++++.+|..
T Consensus       151 ~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~gad~~~~d~~  224 (282)
T 1oy3_D          151 LEAENYDGHTPLHVAVIHK-DAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAAS----VLELLLKAGADPTARMYG  224 (282)
T ss_dssp             TTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTT
T ss_pred             CCCcCCCCcCHHHHHHHcC-CHHHHHHHHH-cCCCCCCCCCCCCcCHHHHHHHcCCHH----HHHHHHHcCCCCcccccC
Confidence            8999999999999999988 9999999999 99999999865 999999999999987    799999999999999999


Q ss_pred             CCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCCCCCCCCCCCCCCCCccCC
Q 005790          416 ARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELN  473 (677)
Q Consensus       416 G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~~~g~t~~~~~~~~~~~~  473 (677)
                      |+||||+|+....          .+++++|+++||+++.++..|.|+.......+..+
T Consensus       225 g~tpL~~A~~~~~----------~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~~  272 (282)
T 1oy3_D          225 GRTPLGSALLRPN----------PILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSD  272 (282)
T ss_dssp             SCCHHHHHHTSSC----------HHHHHHHHHTTCCCCCCC-----------------
T ss_pred             CCCHHHHHHHcCC----------cHHHHHHHHcCCCcCcCCCcccccccccCCccccc
Confidence            9999999987432          88999999999999999999999887776555443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=7.5e-37  Score=311.05  Aligned_cols=226  Identities=22%  Similarity=0.180  Sum_probs=177.9

Q ss_pred             cccCcHHHHHHHcC-------------CHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHH
Q 005790           24 WWYASPIDWAAANG-------------HYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLF   90 (677)
Q Consensus        24 ~~g~TpL~~Aa~~G-------------~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lL   90 (677)
                      ..|.||||+||..|             +.++|++|++.|++++..           ....+.|+||+|+..++.+++++|
T Consensus         8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~-----------~d~~g~t~L~~A~~~g~~~~v~~L   76 (253)
T 1yyh_A            8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ-----------TDRTGETALHLAARYSRSDAAKRL   76 (253)
T ss_dssp             --------------------------------------------C-----------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccc-----------cCCCCCcHHHHHHHcCCHHHHHHH
Confidence            34789999999988             999999999999987532           356789999999999999999999


Q ss_pred             HhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcc
Q 005790           91 LECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPR  170 (677)
Q Consensus        91 l~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~  170 (677)
                      ++    .|++++.+|..|.||||+|+..|+.++|++|++.++..++..+..|.||||+|+ ..|+.+++++|+++|++++
T Consensus        77 l~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~  151 (253)
T 1yyh_A           77 LE----ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVN  151 (253)
T ss_dssp             HH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHH-HHTCSSHHHHHHHTTCCTT
T ss_pred             HH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHH-HcChHHHHHHHHHcCCCCC
Confidence            99    899999999999999999999999999999999998788888999999999986 6699999999999999988


Q ss_pred             cccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHh
Q 005790          171 FLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA  250 (677)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~  250 (677)
                      ..+..                   |.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++
T Consensus       152 ~~d~~-------------------g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  211 (253)
T 1yyh_A          152 AVDDL-------------------GKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLD  211 (253)
T ss_dssp             CBCTT-------------------SCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CcCCC-------------------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            76544                   478999999999999999999999998 7889999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 005790          251 SFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS  285 (677)
Q Consensus       251 ~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g  285 (677)
                      +|++++.+|..|.|||++|+..|+.+++++|....
T Consensus       212 ~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             cCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            99999999999999999999999999999998754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.9e-37  Score=308.10  Aligned_cols=230  Identities=23%  Similarity=0.240  Sum_probs=191.1

Q ss_pred             hhhcCCCChHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCc
Q 005790          102 LIRAGYGGWLLYTAASAGDLGFVKQLLDK---NPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGE  178 (677)
Q Consensus       102 ~~~d~~G~t~L~~Aa~~g~~eivk~LL~~---g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~  178 (677)
                      +.+|..|.||||+||..|+.++|++|++.   ....++..+..|.||||+|+ ..|+.+++++|+++|++++..+..   
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~---   78 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV-ITTLPSVVRLLVTAGASPMALDRH---   78 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT---
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHH-HcCCHHHHHHHHHcCCCccccCCC---
Confidence            45788999999999999999999999972   34467778889999999985 679999999999999988866544   


Q ss_pred             chhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCC----CccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 005790          179 LEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCT----DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI  254 (677)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga----~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~  254 (677)
                                      |.||||+|+..|+.+++++|++.++    ++ +..+..|.||||+|+..|+.+++++|+++|++
T Consensus        79 ----------------g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  141 (241)
T 1k1a_A           79 ----------------GQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGAD  141 (241)
T ss_dssp             ----------------SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             ----------------CCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence                            3689999999999999999999988    55 67888999999999999999999999999999


Q ss_pred             CCCCC-CCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccch
Q 005790          255 INSTD-HQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNM  333 (677)
Q Consensus       255 in~~d-~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~  333 (677)
                      ++..+ ..|.||||+|+..|+.+++++|++.| .+                                             
T Consensus       142 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~---------------------------------------------  175 (241)
T 1k1a_A          142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-AN---------------------------------------------  175 (241)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CC---------------------------------------------
T ss_pred             cccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CC---------------------------------------------
Confidence            99988 78999999999999999999999887 33                                             


Q ss_pred             hhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCC
Q 005790          334 EDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGG  407 (677)
Q Consensus       334 ~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Ga  407 (677)
                         ++.+|..|.||||+|+..+ +.+++++|++ .|+|++.+|..|.||||+|+..++.+    +++.|++.++
T Consensus       176 ---~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~----i~~~l~~~~a  240 (241)
T 1k1a_A          176 ---VNAQMYSGSSALHSASGRG-LLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVID----ILRGKATRPA  240 (241)
T ss_dssp             ---TTCBCTTSCBHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHH----HHTC------
T ss_pred             ---CCCcCCCCCCHHHHHHHcC-CHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcCcHH----HHhhhccCCC
Confidence               4555777888888888877 8889999988 88888888888889999888888766    5776666554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=319.58  Aligned_cols=233  Identities=25%  Similarity=0.255  Sum_probs=166.9

Q ss_pred             hcCCCChHHHHHHHcCCHHHHHHHHHcCCCc-------cccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccC
Q 005790          104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLL-------VFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKG  176 (677)
Q Consensus       104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~-------~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~  176 (677)
                      +|..+.++|+.||..|+.++|++||+.++.+       ++..+..|.|||++|+...+...++++|++.|+++|..+.. 
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~-   85 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD-   85 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT-
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC-
Confidence            4666789999999999999999999988753       34566778899999875544556889999999988876554 


Q ss_pred             CcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCC
Q 005790          177 GELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIIN  256 (677)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in  256 (677)
                                        |+||||+|+..|+.++|++|++.|+++ +..+..|.||||+|+..++.+++++|+++|++++
T Consensus        86 ------------------G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n  146 (269)
T 4b93_B           86 ------------------GSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN  146 (269)
T ss_dssp             ------------------SCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred             ------------------CCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCC
Confidence                              368999999999999999999999988 7788899999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhh
Q 005790          257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI  336 (677)
Q Consensus       257 ~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~  336 (677)
                      .+|..|.||||+|+..|+.+++++|++.|+ +                                                
T Consensus       147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga-d------------------------------------------------  177 (269)
T 4b93_B          147 KKDLSGNTPLIYACSGGHHELVALLLQHGA-S------------------------------------------------  177 (269)
T ss_dssp             CCCTTCCCHHHHHHHTTCGGGHHHHHHTTC-C------------------------------------------------
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-C------------------------------------------------
Confidence            999999999999999999999999998873 2                                                


Q ss_pred             hhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCC
Q 005790          337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFG  410 (677)
Q Consensus       337 in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin  410 (677)
                      +|.++..|.||||+|+..| +.++|++||+ .|+|+|.+|..|+||||+|+.+++  + ..+++.|...++.++
T Consensus       178 vn~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~~--i-~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          178 INASNNKGNTALHEAVIEK-HVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSK--I-MELLQVVPSCVASLD  246 (269)
T ss_dssp             TTCBCTTSCBHHHHHHHTT-CHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTCH--H-HHHTTC---------
T ss_pred             CCccccCCCcHHHHHHHcC-CHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCCc--H-HHHHHHHHHhchhhh
Confidence            5667888999999999988 9999999999 999999999999999999988764  2 235556666655443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.9e-36  Score=302.77  Aligned_cols=226  Identities=26%  Similarity=0.312  Sum_probs=208.7

Q ss_pred             cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 005790          195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ  274 (677)
Q Consensus       195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~  274 (677)
                      +.+|||.|+..|+.++++.|++.+....+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            46899999999999999999999887768889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhC
Q 005790          275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITG  354 (677)
Q Consensus       275 ~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~  354 (677)
                      .+++++|++.+ .+++..+..|.||||+|+..          ++.+++++|++.+     ++++.++..|.||||+|+..
T Consensus        86 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~----------~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~  149 (231)
T 3aji_A           86 DEIVKALLVKG-AHVNAVNQNGCTPLHYAASK----------NRHEIAVMLLEGG-----ANPDAKDHYDATAMHRAAAK  149 (231)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT----------TCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHc----------CCHHHHHHHHHcC-----CCCCCcCCCCCcHHHHHHHc
Confidence            99999999998 67899999999999999995          4566777776655     55888999999999999998


Q ss_pred             CCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCC
Q 005790          355 NVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPG  434 (677)
Q Consensus       355 ~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~  434 (677)
                      + +.+++++|++ .|++++.+|..|.||||+|+..++.+    ++++|+++|++++.+|..|+|||++|.....      
T Consensus       150 ~-~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~------  217 (231)
T 3aji_A          150 G-NLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVE----EAKFLVTQGASIYIENKEEKTPLQVAKGGLG------  217 (231)
T ss_dssp             T-CHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHSCHHHH------
T ss_pred             C-CHHHHHHHHh-cCCCccccCCCCCCHHHHHHHCCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHhhHH------
Confidence            8 9999999999 99999999999999999999999977    7899999999999999999999999876533      


Q ss_pred             CccchhhHHHHHHcCCCC
Q 005790          435 TSFRISDTEIFLYTGIDV  452 (677)
Q Consensus       435 ~~~~~~~v~~LL~~Gad~  452 (677)
                          .+++++|+++|+++
T Consensus       218 ----~~i~~lL~~~~a~i  231 (231)
T 3aji_A          218 ----LILKRLAEGEEASM  231 (231)
T ss_dssp             ----HHHHHHHHHHHHCC
T ss_pred             ----HHHHHHHccccccC
Confidence                78999999999874

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.2e-35  Score=298.12  Aligned_cols=215  Identities=26%  Similarity=0.259  Sum_probs=122.7

Q ss_pred             ccccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCch
Q 005790           23 QWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSL  102 (677)
Q Consensus        23 ~~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~  102 (677)
                      +..|.||||+||..|+.++|++|+++|++++.                                                
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------------------------------------------   39 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDT------------------------------------------------   39 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTC------------------------------------------------
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCc------------------------------------------------
Confidence            34578999999999999999999998877642                                                


Q ss_pred             hhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcC-CCcccccccCCcchh
Q 005790          103 IRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFA-VSPRFLTAKGGELEE  181 (677)
Q Consensus       103 ~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~G-ad~~~~~~~~~~~~~  181 (677)
                       .+..|.||||+|+..|+.++|++|++.|+ .++..+..|.||||+|+ ..|+.+++++|+++| ++++..+..      
T Consensus        40 -~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~~~~~Ll~~~~~~~~~~~~~------  110 (237)
T 3b7b_A           40 -CSEDQRTPLMEAAENNHLEAVKYLIKAGA-LVDPKDAEGSTCLHLAA-KKGHYEVVQYLLSNGQMDVNCQDDG------  110 (237)
T ss_dssp             -CCTTCCCHHHHHHHTTCHHHHHHHHTTTC-CCCCCCTTSCCHHHHHH-HTTCHHHHHHHHTTTCCCTTCCCTT------
T ss_pred             -cCCCCCCHHHHHHHhCCHHHHHHHHhCCC-CCCCCCCCCCcHHHHHH-HcCCHHHHHHHHhCCCCCcccCCCC------
Confidence             23345555555555555555555555544 23334445555555543 345555555555555 444433222      


Q ss_pred             hhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCC
Q 005790          182 HIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ  261 (677)
Q Consensus       182 ~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~  261 (677)
                                   |.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..|..
T Consensus       111 -------------g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  176 (237)
T 3b7b_A          111 -------------GWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH  176 (237)
T ss_dssp             -------------SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTT
T ss_pred             -------------CCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC
Confidence                         234555555555555555555555554 445555555555555555555555555555555555555


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCch
Q 005790          262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQT  309 (677)
Q Consensus       262 g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~  309 (677)
                      |.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++.
T Consensus       177 g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          177 GDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHH
T ss_pred             CCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHH
Confidence            555555555555555555555555 34555555555555555555544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.7e-36  Score=310.46  Aligned_cols=249  Identities=14%  Similarity=0.020  Sum_probs=184.7

Q ss_pred             ccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhh
Q 005790           25 WYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIR  104 (677)
Q Consensus        25 ~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~  104 (677)
                      .|.||||+||..|+.++|++||++|++++.-         -.....+.||||+|+..++.+++++|++    .|++++.+
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~   74 (282)
T 1oy3_D            8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYL---------DLQNDLGQTALHLAAILGEASTVEKLYA----AGAGVLVA   74 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGG---------GCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCSSCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccc---------cccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCC
Confidence            4779999999999999999999999984310         0235578999999999999999999999    89999999


Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHHcCCCccc------------cCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccc
Q 005790          105 AGYGGWLLYTAASAGDLGFVKQLLDKNPLLVF------------GEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFL  172 (677)
Q Consensus       105 d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~------------~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~  172 (677)
                      +..|.||||+|+..|+.++|++|+++++....            .....+.++++.++.......+...+...+++++..
T Consensus        75 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (282)
T 1oy3_D           75 ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE  154 (282)
T ss_dssp             CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC
T ss_pred             CCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc
Confidence            99999999999999999999999998764221            112345566666655545555566666666655544


Q ss_pred             cccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCC-CCCCcHHHHHHHhCCHHHHHHHHhc
Q 005790          173 TAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRD-KQGSTILHAAAGRGQVEVVKDLIAS  251 (677)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d-~~g~TpL~~A~~~g~~eivk~Ll~~  251 (677)
                      +.                   .|.||||+|+..|+.++|++|+++|+++ +..+ ..|+||||+|+..|+.++|++|+++
T Consensus       155 ~~-------------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  214 (282)
T 1oy3_D          155 NY-------------------DGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKA  214 (282)
T ss_dssp             CT-------------------TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CC-------------------CCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            33                   3579999999999999999999999999 5555 5699999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcC
Q 005790          252 FDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF  307 (677)
Q Consensus       252 ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~  307 (677)
                      |++++.+|..|.||||+|+..|+.+++++|+++| ++++.++..|.|||++|....
T Consensus       215 gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHG-APEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT-CCCCCCC--------------
T ss_pred             CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC-CCcCcCCCcccccccccCCcc
Confidence            9999999999999999999999999999999999 779999999999999998743

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3e-36  Score=302.96  Aligned_cols=228  Identities=23%  Similarity=0.237  Sum_probs=201.5

Q ss_pred             hhhccchHHHHHHhcCCHHHHHHHHh----cCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 005790          191 KWEMMNRAVHAAARGGNLKILKELLE----NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPL  266 (677)
Q Consensus       191 ~~~~~~t~Lh~A~~~g~~eivk~LL~----~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL  266 (677)
                      .+..|.||||+|+..|+.+++++|++    .|.++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   83 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA   83 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            45567899999999999999999997    78888 78899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCC---CccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccC-C
Q 005790          267 HIAAYRGQPAVVEALILASPS---MISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKN-N  342 (677)
Q Consensus       267 ~~A~~~g~~~iv~~LL~~g~~---~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d-~  342 (677)
                      |+|+..|+.+++++|++.++.   +++..+..|.||||+|+.          .++.+++++|++.+     .+++..+ .
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~----------~~~~~~~~~Ll~~g-----~~~~~~~~~  148 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN----------TECQETVQLLLERG-----ADIDAVDIK  148 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHH----------HTCHHHHHHHHHTT-----CCTTCCCTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHH----------cCCHHHHHHHHHcC-----CCccccccc
Confidence            999999999999999999852   788899999999999998          45567777777765     4578778 7


Q ss_pred             CCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHH
Q 005790          343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIAS  422 (677)
Q Consensus       343 ~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~  422 (677)
                      .|.||||+|+..+ +.+++++|++ .|+++|.+|..|.||||+|+..++.+    ++++|+++|++++.+|..|+|||++
T Consensus       149 ~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~  222 (241)
T 1k1a_A          149 SGRSPLIHAVENN-SLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSSLKNCHNDTPLMV  222 (241)
T ss_dssp             TCCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCTTTT
T ss_pred             CCCcHHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCCCcCCCCCCHHHH
Confidence            8999999999988 9999999999 99999999999999999999999987    7899999999999999999999998


Q ss_pred             HHHHhCCCCCCCCccchhhHHHHHHcCC
Q 005790          423 HIKMLGNGSSPGTSFRISDTEIFLYTGI  450 (677)
Q Consensus       423 al~~~~~~~~~~~~~~~~~v~~LL~~Ga  450 (677)
                      |+....          .++++.|++.++
T Consensus       223 A~~~~~----------~~i~~~l~~~~a  240 (241)
T 1k1a_A          223 ARSRRV----------IDILRGKATRPA  240 (241)
T ss_dssp             CSSHHH----------HHHHTC------
T ss_pred             HHhcCc----------HHHHhhhccCCC
Confidence            876533          788999988776

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.7e-36  Score=309.20  Aligned_cols=223  Identities=22%  Similarity=0.216  Sum_probs=160.3

Q ss_pred             CCccccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCC
Q 005790           21 GDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKN  100 (677)
Q Consensus        21 ~~~~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~  100 (677)
                      -.++.+.+||+.||..|++++|++||+.|++....                                         ....
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-----------------------------------------~~~~   44 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED-----------------------------------------AEDT   44 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc-----------------------------------------cccc
Confidence            34455679999999999999999999998764321                                         2223


Q ss_pred             chhhcCCCChHHHHHHHcCCHH-HHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcc
Q 005790          101 SLIRAGYGGWLLYTAASAGDLG-FVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGEL  179 (677)
Q Consensus       101 ~~~~d~~G~t~L~~Aa~~g~~e-ivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~  179 (677)
                      ++..+..|.|||++|+..++.+ ++++|++.|+ +++..|.+|.||||+|| ..|+.++|++|+++|++++..+..    
T Consensus        45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga-dvn~~d~~G~TpLh~A~-~~g~~~~v~~Ll~~~a~~~~~~~~----  118 (269)
T 4b93_B           45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL-GVNVTSQDGSSPLHVAA-LHGRADLIPLLLKHGANAGARNAD----  118 (269)
T ss_dssp             ------------------------------CCC-CTTCCCTTSCCHHHHHH-HTTCTTHHHHHHHTTCCTTCCCTT----
T ss_pred             ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC-CCCCcCCCCCCHHHHHH-HcCcHHHHHHHHhcCCCcCccCCC----
Confidence            4556777888999988877754 7888888887 56778888999999885 668999999999999888766544    


Q ss_pred             hhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCC
Q 005790          180 EEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD  259 (677)
Q Consensus       180 ~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d  259 (677)
                                     |.||+|+|+..++.+++++|++.|+++ +.+|..|+||||+|+..|+.++|++|+++|+++|..+
T Consensus       119 ---------------g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~  182 (269)
T 4b93_B          119 ---------------QAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN  182 (269)
T ss_dssp             ---------------CCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBC
T ss_pred             ---------------CCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccc
Confidence                           368999999999999999999999998 7788999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcC
Q 005790          260 HQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF  307 (677)
Q Consensus       260 ~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~  307 (677)
                      ..|.||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+.++
T Consensus       183 ~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          183 NKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             TTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTC
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCC
Confidence            99999999999999999999999988 678899999999999998754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.6e-35  Score=295.13  Aligned_cols=215  Identities=23%  Similarity=0.273  Sum_probs=189.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP  187 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~  187 (677)
                      |.||||+||..|+.++|++|++.++......+..|.||||+|+ ..|+.+++++|+++|++++....             
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~-------------   67 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV-SFQAHEITSFLLSKMENVNLDDY-------------   67 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTCTTCCGGGC-------------
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHH-HcCCHHHHHHHHhcccccccccc-------------
Confidence            7899999999999999999999998777778999999999985 77999999999999965553321             


Q ss_pred             hhhhhhccchHHHHHHhcCCHHHHHHHHhcC--CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 005790          188 SVYKWEMMNRAVHAAARGGNLKILKELLENC--TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP  265 (677)
Q Consensus       188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~g--a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp  265 (677)
                         .+..|.||||+|+..|+.+++++|+++|  +++ +..+..|.||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus        68 ---~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  143 (228)
T 2dzn_A           68 ---PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIP  143 (228)
T ss_dssp             ---CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             ---CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCH
Confidence               1223579999999999999999999998  777 7788999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCc
Q 005790          266 LHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGR  345 (677)
Q Consensus       266 L~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~  345 (677)
                      ||+|+..|+.+++++|++.+..+                                                ++.+|..|.
T Consensus       144 L~~A~~~~~~~~v~~Ll~~g~~~------------------------------------------------~~~~d~~g~  175 (228)
T 2dzn_A          144 LHRAASVGSLKLIELLCGLGKSA------------------------------------------------VNWQDKQGW  175 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCC------------------------------------------------SCCCCTTSC
T ss_pred             HHHHHHcCCHHHHHHHHhcCccc------------------------------------------------ccCcCCCCC
Confidence            99999999999999999888443                                                455677889


Q ss_pred             hHHHHHHhCCCcHHHHHHHh-hCCCCCccccCCCCCcHHHHHhhCC
Q 005790          346 TALHMAITGNVHLELVQLLM-SAPSINVNVRDNDGMTTLDLLKQRP  390 (677)
Q Consensus       346 TpLh~A~~~~~~~eiv~lLL-~~~Gadin~~d~~G~TpL~~A~~~~  390 (677)
                      ||||+|+..+ +.+++++|+ + .|+|++.+|..|+|||++|+..+
T Consensus       176 t~L~~A~~~~-~~~~v~~Ll~~-~ga~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          176 TPLFHALAEG-HGDAAVLLVEK-YGAEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             CHHHHHHHTT-CHHHHHHHHHH-HCCCSCCBCTTSCBGGGGCSSTT
T ss_pred             CHHHHHHHcC-CHHHHHHHHHh-cCCCCCccCCCCCcHHHHHHHHH
Confidence            9999999988 999999999 6 89999999999999999997653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.2e-35  Score=296.04  Aligned_cols=220  Identities=23%  Similarity=0.271  Sum_probs=198.2

Q ss_pred             cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcC--CCCCC-CCCCCCcHHHHHHH
Q 005790          195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASF--DIINS-TDHQGNTPLHIAAY  271 (677)
Q Consensus       195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~g--a~in~-~d~~g~tpL~~A~~  271 (677)
                      |+||||+|+..|+.++|++|++.++++.+..+..|.||||+|+..|+.+++++|+++|  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6799999999999999999999999987778999999999999999999999999999  55555 78899999999999


Q ss_pred             cCCHHHHHHHHHhC-CCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHH
Q 005790          272 RGQPAVVEALILAS-PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM  350 (677)
Q Consensus       272 ~g~~~iv~~LL~~g-~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~  350 (677)
                      .|+.+++++|++.+ ..+++..+..|.||||+|+..          ++.+++++|++.+     ++++.+|..|.||||+
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~----------~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~  146 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK----------KWFEVSQFLIENG-----ASVRIKDKFNQIPLHR  146 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHT----------TCHHHHHHHHHTT-----CCSCCCCTTSCCHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHc----------CCHhHHHHHHHcC-----CCccccCCCCCCHHHH
Confidence            99999999999987 366888999999999999984          5566777777664     5689999999999999


Q ss_pred             HHhCCCcHHHHHHHhhCCC-CCccccCCCCCcHHHHHhhCCCCchHHHHHHHHH-HcCCCCCCCcccCCchHHHHHHHhC
Q 005790          351 AITGNVHLELVQLLMSAPS-INVNVRDNDGMTTLDLLKQRPQSASSDILIRHLI-SAGGIFGCQDYSARRAIASHIKMLG  428 (677)
Q Consensus       351 A~~~~~~~eiv~lLL~~~G-adin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll-~~Gadin~~d~~G~T~L~~al~~~~  428 (677)
                      |+..+ +.+++++|++ .| +++|.+|..|+||||+|+..++.+    ++++|+ ++|++++.+|..|+|||++|..   
T Consensus       147 A~~~~-~~~~v~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~~~~~----~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~---  217 (228)
T 2dzn_A          147 AASVG-SLKLIELLCG-LGKSAVNWQDKQGWTPLFHALAEGHGD----AAVLLVEKYGAEYDLVDNKGAKAEDVALN---  217 (228)
T ss_dssp             HHHTT-CHHHHHHHHT-TTCCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHHHCCCSCCBCTTSCBGGGGCSS---
T ss_pred             HHHcC-CHHHHHHHHh-cCcccccCcCCCCCCHHHHHHHcCCHH----HHHHHHHhcCCCCCccCCCCCcHHHHHHH---
Confidence            99988 9999999999 88 999999999999999999999987    688888 8999999999999999998744   


Q ss_pred             CCCCCCCccchhhHHHHHHc
Q 005790          429 NGSSPGTSFRISDTEIFLYT  448 (677)
Q Consensus       429 ~~~~~~~~~~~~~v~~LL~~  448 (677)
                                .+++++|+++
T Consensus       218 ----------~~~~~~l~~~  227 (228)
T 2dzn_A          218 ----------EQVKKFFLNN  227 (228)
T ss_dssp             ----------TTHHHHHHTT
T ss_pred             ----------HHHHHHHHhc
Confidence                      4578888764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=8.4e-35  Score=291.45  Aligned_cols=234  Identities=26%  Similarity=0.337  Sum_probs=175.1

Q ss_pred             hhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchh
Q 005790          102 LIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEE  181 (677)
Q Consensus       102 ~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~  181 (677)
                      +..|.+|.|+|++|+..|+.++|++|++.|. +++..+..|.||||+|+ ..|+.+++++|+++|++++.....      
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~------   74 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGY-DVRQPDKENVTLLHWAA-INNRIDLVKYYISKGAIVDQLGGD------   74 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCBTT------
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCC-CcCCCCCCCCCHHHHHH-HhCCHHHHHHHHHcCCcchhhcCC------
Confidence            3456677778888888888888888887775 45566777777777774 667778888888777766544322      


Q ss_pred             hhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCC
Q 005790          182 HIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ  261 (677)
Q Consensus       182 ~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~  261 (677)
                                  .+.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus        75 ------------~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  141 (240)
T 3eu9_A           75 ------------LNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN  141 (240)
T ss_dssp             ------------TTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ------------cCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCC
Confidence                        1357777777777777777777777777 667777777777777777777777777777777777777


Q ss_pred             CCcHHHHHHHcCC-HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhcc
Q 005790          262 GNTPLHIAAYRGQ-PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAK  340 (677)
Q Consensus       262 g~tpL~~A~~~g~-~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~  340 (677)
                      |.||||+|+..++ .+++++|++.+. +                                                ++..
T Consensus       142 g~t~l~~a~~~~~~~~~~~~L~~~~~-~------------------------------------------------~~~~  172 (240)
T 3eu9_A          142 GMTPLMWAAYRTHSVDPTRLLLTFNV-S------------------------------------------------VNLG  172 (240)
T ss_dssp             SCCHHHHHHHHCCSSTTHHHHHHTTC-C------------------------------------------------TTCC
T ss_pred             CCcHHHHHHHhCChHHHHHHHHhcCC-C------------------------------------------------cchh
Confidence            7777777775554 667777776662 2                                                4445


Q ss_pred             CC-CCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCC
Q 005790          341 NN-DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGC  411 (677)
Q Consensus       341 d~-~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~  411 (677)
                      +. .|.||||+|+..+ +.+++++|++ .|++++.+|..|.|||++|+..++.+    ++++|+++|++...
T Consensus       173 ~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~----~v~~L~~~~~~~~~  238 (240)
T 3eu9_A          173 DKYHKNTALHWAVLAG-NTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVW----MINHLQEARQAKGY  238 (240)
T ss_dssp             CTTTCCCHHHHHHHHT-CHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHHHC-----
T ss_pred             hccCCCcHHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHH----HHHHHHHhhhccCc
Confidence            54 7889999999988 9999999999 89999999999999999999999987    68888888877543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=289.55  Aligned_cols=235  Identities=19%  Similarity=0.175  Sum_probs=199.3

Q ss_pred             ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHH
Q 005790          136 FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELL  215 (677)
Q Consensus       136 ~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL  215 (677)
                      +..|.+|.|+|++|+ ..|+.+++++|++.|++++..+..                   |.||||+|+..|+.+++++|+
T Consensus         3 ~~~d~~~~~~l~~A~-~~g~~~~~~~Ll~~g~~~~~~~~~-------------------g~t~L~~A~~~~~~~~v~~Ll   62 (240)
T 3eu9_A            3 THIDDYSTWDIVKAT-QYGIYERCRELVEAGYDVRQPDKE-------------------NVTLLHWAAINNRIDLVKYYI   62 (240)
T ss_dssp             CCCSCGGGCCHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT-------------------SCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccchHHHHHH-HcCChHHHHHHHHcCCCcCCCCCC-------------------CCCHHHHHHHhCCHHHHHHHH
Confidence            345778889998874 779999999999999888765543                   368999999999999999999


Q ss_pred             hcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCC
Q 005790          216 ENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTS  295 (677)
Q Consensus       216 ~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~  295 (677)
                      ++|+++....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+. +       
T Consensus        63 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~-~-------  134 (240)
T 3eu9_A           63 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ-D-------  134 (240)
T ss_dssp             HTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-C-------
T ss_pred             HcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCC-C-------
Confidence            99998866666778899999999999999999999999999888889999999999999999999988773 2       


Q ss_pred             CCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCcccc
Q 005790          296 GETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVR  375 (677)
Q Consensus       296 g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~  375 (677)
                                                               ++.++..|.||||+|+..+...+++++|++ .|++++..
T Consensus       135 -----------------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~-~~~~~~~~  172 (240)
T 3eu9_A          135 -----------------------------------------VDMMDQNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLG  172 (240)
T ss_dssp             -----------------------------------------TTCCCTTSCCHHHHHHHHCCSSTTHHHHHH-TTCCTTCC
T ss_pred             -----------------------------------------ccccCCCCCcHHHHHHHhCChHHHHHHHHh-cCCCcchh
Confidence                                                     455677889999999976646899999999 99999999


Q ss_pred             CC-CCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCC
Q 005790          376 DN-DGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSS  454 (677)
Q Consensus       376 d~-~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~  454 (677)
                      +. .|.||||+|+..++.+    ++++|+++|++++.+|..|+|||++|+....          .+++++|+++|++..-
T Consensus       173 ~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----------~~~v~~L~~~~~~~~~  238 (240)
T 3eu9_A          173 DKYHKNTALHWAVLAGNTT----VISLLLEAGANVDAQNIKGESALDLAKQRKN----------VWMINHLQEARQAKGY  238 (240)
T ss_dssp             CTTTCCCHHHHHHHHTCHH----HHHHHHHHTCCTTCBCTTSCBHHHHHHHTTC----------HHHHHHHHHHC-----
T ss_pred             hccCCCcHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc----------HHHHHHHHHhhhccCc
Confidence            97 9999999999999987    7899999999999999999999999988543          8899999999998653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.1e-35  Score=292.31  Aligned_cols=219  Identities=20%  Similarity=0.214  Sum_probs=199.3

Q ss_pred             cCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005790          205 GGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILA  284 (677)
Q Consensus       205 ~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~  284 (677)
                      .|+.+++++|+++|++++...|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            36788999999999999777799999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHH
Q 005790          285 SPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLL  364 (677)
Q Consensus       285 g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lL  364 (677)
                      ++.+++..+..|.||||+|+.          .++.+++++|++.+     ++++.+|..|.||||+|+..+ +.+++++|
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~----------~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~L  144 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAAR----------LAVEGMLEDLINSH-----ADVNAVDDLGKSALHWAAAVN-NVDAAVVL  144 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHH----------HTCHHHHHHHHHTT-----CCTTCBCTTSCBHHHHHHHTT-CHHHHHHH
T ss_pred             CCCCcccCCCCCCcHHHHHHH----------hCcHHHHHHHHHcC-----CCCcCcCCCCCcHHHHHHHcC-CHHHHHHH
Confidence            977899999999999999999          45667777777755     458899999999999999988 99999999


Q ss_pred             hhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHH
Q 005790          365 MSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEI  444 (677)
Q Consensus       365 L~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~  444 (677)
                      ++ .|++++.+|..|.||||+|+..++.+    ++++|+++|++++.+|..|.|||++|+....          .+++++
T Consensus       145 l~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----------~~i~~~  209 (223)
T 2f8y_A          145 LK-NGANKDMQNNREETPLFLAAREGSYE----TAKVLLDHFANRDITDHMDRLPRDIAQERMH----------HDIVRL  209 (223)
T ss_dssp             HH-TTCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----------HHHHHH
T ss_pred             HH-cCCCCCCcCCCCcCHHHHHHHcCCHH----HHHHHHHcCCCCccccccCCCHHHHHHHhcc----------hHHHHH
Confidence            99 89999999999999999999999987    7999999999999999999999999988533          889999


Q ss_pred             HHHcCCCCCC
Q 005790          445 FLYTGIDVSS  454 (677)
Q Consensus       445 LL~~Gad~~~  454 (677)
                      |+++|+....
T Consensus       210 L~~~g~~~~~  219 (223)
T 2f8y_A          210 LDEYNLVRSP  219 (223)
T ss_dssp             HHHTTCSSCC
T ss_pred             HHHcCCCccc
Confidence            9999998654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.2e-35  Score=304.14  Aligned_cols=252  Identities=23%  Similarity=0.219  Sum_probs=206.6

Q ss_pred             HhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCC
Q 005790          151 ARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGS  230 (677)
Q Consensus       151 ~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~  230 (677)
                      +..++.+.++.++....++........          .......+.|+||.|+..|+.++|++|+++|+++ +..+..|.
T Consensus         6 a~~~~~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~   74 (299)
T 1s70_B            6 AKQKRNEQLKRWIGSETDLEPPVVKRK----------KTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGL   74 (299)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCSCCCCS----------CCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCC
T ss_pred             HHHHHHHHHHHHHccccccccccccCc----------ccccccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCC
Confidence            455777777777776655443222211          1112234579999999999999999999999998 78999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchH
Q 005790          231 TILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTY  310 (677)
Q Consensus       231 TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~  310 (677)
                      ||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++| ++++..+..|.||||+|+..+...
T Consensus        75 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~  153 (299)
T 1s70_B           75 TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEAMEE  153 (299)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCSHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHhcchHH
Confidence            9999999999999999999999999999999999999999999999999999998 678999999999999999966665


Q ss_pred             HHHHhhHH----------------HHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccc
Q 005790          311 AFRRLDRQ----------------VKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV  374 (677)
Q Consensus       311 ~~~~L~~~----------------~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~  374 (677)
                      .+..+...                ...+..++..+..    .....+..|.||||+|+..+ +.++|++|++ .|+|+|.
T Consensus       154 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~g~d~~~  227 (299)
T 1s70_B          154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI----NDVRHAKSGGTALHVAAAKG-YTEVLKLLIQ-ARYDVNI  227 (299)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC----CCCCCTTTCCCHHHHHHHHT-CHHHHHHHHT-TTCCTTC
T ss_pred             HHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc----chhhhcCCCCCHHHHHHHCC-cHHHHHHHHH-cCCCCCC
Confidence            55543211                1112222222211    12335678999999999998 9999999999 9999999


Q ss_pred             cCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHH
Q 005790          375 RDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHI  424 (677)
Q Consensus       375 ~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al  424 (677)
                      +|..|.||||+|+..|+.+    ++++|+++|++++.+|..|+|||++|.
T Consensus       228 ~d~~g~tpL~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~  273 (299)
T 1s70_B          228 KDYDGWTPLHAAAHWGKEE----ACRILVENLCDMEAVNKVGQTAFDVAD  273 (299)
T ss_dssp             CCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             cCCCCCcHHHHHHhcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            9999999999999999987    789999999999999999999999874

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.8e-35  Score=305.24  Aligned_cols=231  Identities=19%  Similarity=0.191  Sum_probs=136.9

Q ss_pred             ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHH
Q 005790          136 FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELL  215 (677)
Q Consensus       136 ~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL  215 (677)
                      +..|..|.||||+|| ..|+.+++++|+++|++++..+                     |.||||+|+..|+.+++++|+
T Consensus        25 ~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~---------------------g~t~L~~A~~~g~~~~v~~Ll   82 (285)
T 3kea_A           25 FKADVHGHSASYYAI-ADNNVRLVCTLLNAGALKNLLE---------------------NEFPLHQAATLEDTKIVKILL   82 (285)
T ss_dssp             TCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTGGGSCCT---------------------TCCHHHHHTTSSSCHHHHHHH
T ss_pred             CccCCCCCCHHHHHH-HcCCHHHHHHHHhCCCCCCCCC---------------------CCCHHHHHHHcCCHHHHHHHH
Confidence            444455555555543 3455555555555555444321                     235555555555555555555


Q ss_pred             hcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCC-CcHHHHHHHcCCHHHHHHHHHhCCCCccccCC
Q 005790          216 ENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG-NTPLHIAAYRGQPAVVEALILASPSMISVKNT  294 (677)
Q Consensus       216 ~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g-~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~  294 (677)
                      ++|+++ +..+..|+||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++++...+.  .
T Consensus        83 ~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~  159 (285)
T 3kea_A           83 FSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--A  159 (285)
T ss_dssp             HTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC--S
T ss_pred             HCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc--c
Confidence            555555 4455555555555555555555555555555555555555 45555555555555555555555322111  1


Q ss_pred             CCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchH-HHHHHhCCCcHHHHHHHhhCCCCCcc
Q 005790          295 SGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTA-LHMAITGNVHLELVQLLMSAPSINVN  373 (677)
Q Consensus       295 ~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~Tp-Lh~A~~~~~~~eiv~lLL~~~Gadin  373 (677)
                      .|.||||+|+..+          +.+++++|++.     +++++.+|..|.|| ||+|+..+ +.+++++|++ .|+|++
T Consensus       160 ~g~t~L~~A~~~g----------~~~~v~~Ll~~-----gad~n~~~~~g~t~~L~~A~~~~-~~~~v~~Ll~-~gad~~  222 (285)
T 3kea_A          160 ILLSCIHITIKNG----------HVDMMILLLDY-----MTSTNTNNSLLFIPDIKLAIDNK-DIEMLQALFK-YDINIY  222 (285)
T ss_dssp             THHHHHHHHHHTT----------CHHHHHHHHHH-----HHHTCTTCCCBCCTTHHHHHHHT-CHHHHHHHTT-SCBCST
T ss_pred             CCccHHHHHHHcC----------hHHHHHHHHHc-----CCCCCcccCCCCChHHHHHHHcC-CHHHHHHHHH-cCCCCC
Confidence            4555555555532          23333333332     34577888889887 99999888 9999999999 899999


Q ss_pred             ccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCch
Q 005790          374 VRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRA  419 (677)
Q Consensus       374 ~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~  419 (677)
                      .+|       +.|+..++.+    ++++|+++|++++.........
T Consensus       223 ~~~-------~~a~~~~~~~----iv~~Ll~~g~~~~~~~~~~~~~  257 (285)
T 3kea_A          223 SAN-------LENVLLDDAE----IAKMIIEKHVEYKSDSYTKDLD  257 (285)
T ss_dssp             TTT-------GGGGTTTCHH----HHHHHHHHHHHHTTCTTTTTCH
T ss_pred             CCC-------hhhhhcCCHH----HHHHHHHcCCCCCCccccchHH
Confidence            887       3567777766    7888889998888766555444

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.5e-34  Score=287.34  Aligned_cols=217  Identities=20%  Similarity=0.225  Sum_probs=177.2

Q ss_pred             CCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchH
Q 005790          119 GDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRA  198 (677)
Q Consensus       119 g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  198 (677)
                      |+.++|++|++.|+......+..|.||||+|| ..|+.+++++|+++|++++..+..                   |.||
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~-------------------g~t~   61 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAA-RYSRSDAAKRLLEASADANIQDNM-------------------GRTP   61 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT-------------------SCCH
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHH-HcCCHHHHHHHHHcCCCCCCcCCC-------------------CCCH
Confidence            66778888888887666666788888888875 668888888888888887765443                   3678


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 005790          199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVV  278 (677)
Q Consensus       199 Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv  278 (677)
                      ||+|+..|+.+++++|+++++...+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++
T Consensus        62 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  141 (223)
T 2f8y_A           62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA  141 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHH
Confidence            88888888888888888888744477788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcH
Q 005790          279 EALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHL  358 (677)
Q Consensus       279 ~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~  358 (677)
                      ++|++.|. +                                                ++.+|..|.||||+|+..+ +.
T Consensus       142 ~~Ll~~g~-~------------------------------------------------~~~~~~~g~t~L~~A~~~~-~~  171 (223)
T 2f8y_A          142 VVLLKNGA-N------------------------------------------------KDMQNNREETPLFLAAREG-SY  171 (223)
T ss_dssp             HHHHHTTC-C------------------------------------------------TTCCCTTCCCHHHHHHHHT-CH
T ss_pred             HHHHHcCC-C------------------------------------------------CCCcCCCCcCHHHHHHHcC-CH
Confidence            88888763 2                                                4556778889999998888 99


Q ss_pred             HHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCC
Q 005790          359 ELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFG  410 (677)
Q Consensus       359 eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin  410 (677)
                      +++++|++ .|++++.+|..|.|||++|+..++.+    ++++|+++|+...
T Consensus       172 ~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~----i~~~L~~~g~~~~  218 (223)
T 2f8y_A          172 ETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHD----IVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCSSC
T ss_pred             HHHHHHHH-cCCCCccccccCCCHHHHHHHhcchH----HHHHHHHcCCCcc
Confidence            99999999 89999999999999999999999877    6888889988754

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.9e-35  Score=306.42  Aligned_cols=238  Identities=16%  Similarity=0.109  Sum_probs=205.4

Q ss_pred             CCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHH
Q 005790          154 KNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTIL  233 (677)
Q Consensus       154 g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL  233 (677)
                      ...++.++|.+.  +++..+.                   .|.||||+|+..|+.++|++|+++|+++ +..  +|+|||
T Consensus        11 ~~~~v~~lL~~~--~~~~~d~-------------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L   66 (285)
T 3kea_A           11 KSKQLKSFLSSK--DTFKADV-------------------HGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPL   66 (285)
T ss_dssp             CHHHHHHHHHST--TTTCCCT-------------------TSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHH
T ss_pred             CHHHHHHHHHhC--CCCccCC-------------------CCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHH
Confidence            455677777665  3444333                   3579999999999999999999999998 444  489999


Q ss_pred             HHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCC-CchhhhhhhcCchHHH
Q 005790          234 HAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSG-ETFLHSAVSGFQTYAF  312 (677)
Q Consensus       234 ~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g-~tpLh~A~~~~~~~~~  312 (677)
                      |+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++| ++++..+..| .||||+|+.       
T Consensus        67 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~~t~L~~A~~-------  138 (285)
T 3kea_A           67 HQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVM-------  138 (285)
T ss_dssp             HHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCSSSGGGSHHHHHHH-------
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCccCCCCCCCHHHHHHH-------
Confidence            9999999999999999999999999999999999999999999999999998 7799999999 899999999       


Q ss_pred             HHhhHHHHHHHHHHcccccchhhhhhccCC-CCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcH-HHHHhhCC
Q 005790          313 RRLDRQVKLMKQLASGQIFNMEDIINAKNN-DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTT-LDLLKQRP  390 (677)
Q Consensus       313 ~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~-~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~Tp-L~~A~~~~  390 (677)
                         .++.+++++|++.+       .+..+. .|.||||+|+..+ +.++|++|++ .|+|+|.+|..|+|| ||+|+..+
T Consensus       139 ---~~~~~~v~~Ll~~g-------~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~~~~  206 (285)
T 3kea_A          139 ---LNDVSIVSYFLSEI-------PSTFDLAILLSCIHITIKNG-HVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNK  206 (285)
T ss_dssp             ---TTCHHHHHHHHTTS-------CTTCCCSTHHHHHHHHHHTT-CHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHHHHT
T ss_pred             ---cCCHHHHHHHHhCC-------CccccccCCccHHHHHHHcC-hHHHHHHHHH-cCCCCCcccCCCCChHHHHHHHcC
Confidence               45677888888877       223344 8999999999988 9999999999 899999999999998 99999999


Q ss_pred             CCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCCC
Q 005790          391 QSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDG  456 (677)
Q Consensus       391 ~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~  456 (677)
                      +.+    ++++|+++|++++.+|..+ ++                ....+++++|+++|++++...
T Consensus       207 ~~~----~v~~Ll~~gad~~~~~~~a-~~----------------~~~~~iv~~Ll~~g~~~~~~~  251 (285)
T 3kea_A          207 DIE----MLQALFKYDINIYSANLEN-VL----------------LDDAEIAKMIIEKHVEYKSDS  251 (285)
T ss_dssp             CHH----HHHHHTTSCBCSTTTTGGG-GT----------------TTCHHHHHHHHHHHHHHTTCT
T ss_pred             CHH----HHHHHHHcCCCCCCCChhh-hh----------------cCCHHHHHHHHHcCCCCCCcc
Confidence            977    7999999999999998522 11                113889999999999987644

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=7.3e-36  Score=315.91  Aligned_cols=214  Identities=16%  Similarity=0.120  Sum_probs=168.2

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCcccc-CCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC-
Q 005790          197 RAVHAAARGGNLKILKELLENCTDVLTY-RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ-  274 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~LL~~ga~~~~~-~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~-  274 (677)
                      +.+|.|+..+..+++++|++.|+++ +. .|..|+||||+|+..|+.++|++|+++|++++..|..|+||||+|+..|+ 
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~  177 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN  177 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHH
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccc
Confidence            4578899999999999999999999 66 89999999999999999999999999999999999999999999999998 


Q ss_pred             --HHHHHHHHHhCCCCccccCCCCCchhhhhhh----cCchHHHHHhhHHHHHHHHH-----HcccccchhhhhhccCCC
Q 005790          275 --PAVVEALILASPSMISVKNTSGETFLHSAVS----GFQTYAFRRLDRQVKLMKQL-----ASGQIFNMEDIINAKNND  343 (677)
Q Consensus       275 --~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~----~~~~~~~~~L~~~~eiv~~L-----l~~~~~~~~~~in~~d~~  343 (677)
                        .++++.|++.+.++++..+..|.||||+|+.    .++.++++.|......+..-     +..+....+++++.++..
T Consensus       178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~  257 (327)
T 1sw6_A          178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE  257 (327)
T ss_dssp             HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--------------
T ss_pred             ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc
Confidence              7888999988867899999999999999998    66666666653322211000     001112226789999999


Q ss_pred             CchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHH
Q 005790          344 GRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASH  423 (677)
Q Consensus       344 G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~a  423 (677)
                      |.||||+|+.       +++|++ .  ++|.+|..|+||||+|+..|+.+    ++++|+++|||++.+|..|+||||+|
T Consensus       258 g~t~L~~a~~-------~~~Ll~-~--~~n~~d~~G~TpLh~A~~~g~~~----~v~~Ll~~Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          258 RKDSILENLD-------LKWIIA-N--MLNAQDSNGDTCLNIAARLGNIS----IVDALLDYGADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             --CHHHHHCS-------HHHHHH-H--TTTCCCTTSCCHHHHHHHHCCHH----HHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             CCChhHHHHH-------HHHHHH-h--CCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            9999999985       899999 5  78999999999999999999987    79999999999999999999999987


Q ss_pred             HH
Q 005790          424 IK  425 (677)
Q Consensus       424 l~  425 (677)
                      +.
T Consensus       324 ~~  325 (327)
T 1sw6_A          324 AG  325 (327)
T ss_dssp             CC
T ss_pred             Hh
Confidence            54

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=7.1e-36  Score=315.99  Aligned_cols=254  Identities=15%  Similarity=0.129  Sum_probs=202.4

Q ss_pred             chHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc-------------CCCCCCC---H
Q 005790           82 RSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFG-------------EGEYGVT---D  145 (677)
Q Consensus        82 ~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~-------------~~~~g~t---p  145 (677)
                      ...+++++|++    .|++++..+..|.|+++     |+.++|++||++|......             ....+.+   .
T Consensus        30 ~~~dlv~~ll~----~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  100 (327)
T 1sw6_A           30 FTHDLTSDFLS----SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQ  100 (327)
T ss_dssp             CCTTCCCSTTT----SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC----------------------------
T ss_pred             hcCchHHHHhh----CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccch
Confidence            34455777877    99999999999999987     9999999999998642210             0001111   1


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccc-ccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCcccc
Q 005790          146 IFYAAARSKNCDVFRLIYDFAVSPRF-LTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTY  224 (677)
Q Consensus       146 L~~AA~~~g~~evv~lLl~~Gad~~~-~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~  224 (677)
                      +|.+ +..+..+++++|++.|++++. .+..                   |.||||+|+..|+.++|++||++|+++ +.
T Consensus       101 ~~~a-~~~~~~~~~~~l~~~g~dvn~~~d~~-------------------g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~  159 (327)
T 1sw6_A          101 QHVS-FDSLLQEVNDAFPNTQLNLNIPVDEH-------------------GNTPLHWLTSIANLELVKHLVKHGSNR-LY  159 (327)
T ss_dssp             ---C-HHHHHHHHHHHCTTSCCCSCSCCSTT-------------------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TB
T ss_pred             hHHH-HHhhHHHHHHHHHhcCCCcccccCCC-------------------CCcHHHHHHHcCCHHHHHHHHHcCCCC-CC
Confidence            2433 466778999999999999997 5544                   479999999999999999999999999 78


Q ss_pred             CCCCCCcHHHHHHHhCC---HHHHHHHHhcC-CCCCCCCCCCCcHHHHHHH----cCCHHHHHHHHHhC-----------
Q 005790          225 RDKQGSTILHAAAGRGQ---VEVVKDLIASF-DIINSTDHQGNTPLHIAAY----RGQPAVVEALILAS-----------  285 (677)
Q Consensus       225 ~d~~g~TpL~~A~~~g~---~eivk~Ll~~g-a~in~~d~~g~tpL~~A~~----~g~~~iv~~LL~~g-----------  285 (677)
                      +|..|+||||+|+..|+   .++++.|++.+ ++++..|..|+||||+|+.    .|+.+++++|++.+           
T Consensus       160 ~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~  239 (327)
T 1sw6_A          160 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP  239 (327)
T ss_dssp             CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             cCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchH
Confidence            99999999999999998   78888999887 7899999999999999999    99999999999873           


Q ss_pred             --------CCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCc
Q 005790          286 --------PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVH  357 (677)
Q Consensus       286 --------~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~  357 (677)
                              ..+++..+..|.||||+|+.                +++|++.+       +|.+|..|+||||+|+..+ +
T Consensus       240 i~~~~~~~g~~~~~~~~~g~t~L~~a~~----------------~~~Ll~~~-------~n~~d~~G~TpLh~A~~~g-~  295 (327)
T 1sw6_A          240 IQSGTNEKESKPNDKNGERKDSILENLD----------------LKWIIANM-------LNAQDSNGDTCLNIAARLG-N  295 (327)
T ss_dssp             EEEC----------------CHHHHHCS----------------HHHHHHHT-------TTCCCTTSCCHHHHHHHHC-C
T ss_pred             HHhhhhcccCCcccccccCCChhHHHHH----------------HHHHHHhC-------CCCCCCCCCCHHHHHHHcC-C
Confidence                    47889999999999999984                56666543       8899999999999999998 9


Q ss_pred             HHHHHHHhhCCCCCccccCCCCCcHHHHHhhCC
Q 005790          358 LELVQLLMSAPSINVNVRDNDGMTTLDLLKQRP  390 (677)
Q Consensus       358 ~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~  390 (677)
                      .++|++||+ .|+|++.+|..|+||||+|+..|
T Consensus       296 ~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          296 ISIVDALLD-YGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcC
Confidence            999999999 99999999999999999998764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-33  Score=290.57  Aligned_cols=237  Identities=23%  Similarity=0.171  Sum_probs=205.7

Q ss_pred             ccccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCch
Q 005790           23 QWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSL  102 (677)
Q Consensus        23 ~~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~  102 (677)
                      ++.+.||||+||..|+.++|++||++|++++.            ....+.||||+|+..++.+++++|++    .|++++
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~  100 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINY------------ANVDGLTALHQACIDDNVDMVKFLVE----NGANIN  100 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTC------------BCTTCCBHHHHHHHTTCHHHHHHHHH----TTCCTT
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcc------------cCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCC
Confidence            45677999999999999999999999999874            35578999999999999999999999    899999


Q ss_pred             hhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHh-cCCCcccccccCCcchh
Q 005790          103 IRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYD-FAVSPRFLTAKGGELEE  181 (677)
Q Consensus       103 ~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~-~Gad~~~~~~~~~~~~~  181 (677)
                      ..|..|.||||+|+..|+.++|++|+++|+ +++..+..|.||||+|+ ..++.+++++|+. .|++++.....      
T Consensus       101 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~-~~~~~~~~~~ll~~~~~~~~~~~~~------  172 (299)
T 1s70_B          101 QPDNEGWIPLHAAASCGYLDIAEYLISQGA-HVGAVNSEGDTPLDIAE-EEAMEELLQNEVNRQGVDIEAARKE------  172 (299)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHCC-SHHHHHHHHHHHHHHTCCHHHHHHH------
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCcCCCCCCHHHHHH-hcchHHHHHHHHhhcCCCchhhhhh------
Confidence            999999999999999999999999999987 56678899999999985 7789999988776 44444322111      


Q ss_pred             hhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCC
Q 005790          182 HIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ  261 (677)
Q Consensus       182 ~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~  261 (677)
                                   +.++++        ..+..++..+.......+..|.||||+|+..|+.+++++|+++|++++..|..
T Consensus       173 -------------~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~  231 (299)
T 1s70_B          173 -------------EERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD  231 (299)
T ss_dssp             -------------HHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             -------------hhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCC
Confidence                         122333        34556677777665677889999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790          262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS  305 (677)
Q Consensus       262 g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~  305 (677)
                      |.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+.
T Consensus       232 g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          232 GWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCS
T ss_pred             CCcHHHHHHhcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHH
Confidence            999999999999999999999999 7899999999999999986

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1e-33  Score=284.33  Aligned_cols=217  Identities=22%  Similarity=0.228  Sum_probs=180.0

Q ss_pred             hhhccchHHHHHHhcCCHHHHHHHHhcCC----CccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 005790          191 KWEMMNRAVHAAARGGNLKILKELLENCT----DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPL  266 (677)
Q Consensus       191 ~~~~~~t~Lh~A~~~g~~eivk~LL~~ga----~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL  266 (677)
                      .+..|.||||+|+..|+.+++++|++.+.    ++ +..+..|.||||+|+..|+.++|++|+++|++++..|..|.|||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHh-hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            34567899999999999999999999876    45 78899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCch
Q 005790          267 HIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRT  346 (677)
Q Consensus       267 ~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~T  346 (677)
                      |+|+..|+.+++++|++.+.. ...                                          ...++..+..|.|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~-~~~------------------------------------------~~~~~~~~~~g~t  119 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTT-PHL------------------------------------------HSILKATNYNGHT  119 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTT-TSS------------------------------------------SCGGGCCCTTCCC
T ss_pred             HHHHHcCCHHHHHHHHhcccc-hhH------------------------------------------HHHhhccCCCCCC
Confidence            999999999999999998842 110                                          1125667888999


Q ss_pred             HHHHHHhCCCcHHHHHHHhhCCCCCccccCC-CCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHH
Q 005790          347 ALHMAITGNVHLELVQLLMSAPSINVNVRDN-DGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIK  425 (677)
Q Consensus       347 pLh~A~~~~~~~eiv~lLL~~~Gadin~~d~-~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~  425 (677)
                      |||+|+..+ +.++|++|++ .|++++.++. .|.||||+|+..++.+    ++++|+++|++++.+|..|+|||++|+.
T Consensus       120 ~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~A~~  193 (236)
T 1ikn_D          120 CLHLASIHG-YLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPD----LVSLLLKCGADVNRVTYQGYSPYQLTWG  193 (236)
T ss_dssp             HHHHHHHTT-CHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHTTTCCSCCCCTTCCCGGGGCTT
T ss_pred             HHHHHHHcC-CHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCcccCCCCCHHHHHHc
Confidence            999999988 9999999999 8999999987 8999999999999877    6888999999999999999999988765


Q ss_pred             HhCCCCCCCCccchhhHHHHHHcCCCCC--CCCCCCCCCCCCCC
Q 005790          426 MLGNGSSPGTSFRISDTEIFLYTGIDVS--SDGNANSGSGGMSS  467 (677)
Q Consensus       426 ~~~~~~~~~~~~~~~~v~~LL~~Gad~~--~~~~~g~t~~~~~~  467 (677)
                      ..          ..+++++|+++||+..  ..+..|.++....+
T Consensus       194 ~~----------~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          194 RP----------STRIQQQLGQLTLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             SS----------CHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred             cC----------chHHHHHHHHcchhhhhcCCccchHHHHhhhc
Confidence            32          2789999999999876  55555665554443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=6.1e-32  Score=270.32  Aligned_cols=205  Identities=21%  Similarity=0.202  Sum_probs=176.4

Q ss_pred             cCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhc
Q 005790           26 YASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRA  105 (677)
Q Consensus        26 g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d  105 (677)
                      |.||||+||..|+.++|++||+.                                                .|++++.+|
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~------------------------------------------------~g~~~~~~~   34 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKF------------------------------------------------EGCEVHQRG   34 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTT------------------------------------------------TCSCTTCCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHh------------------------------------------------cCCCcccCC
Confidence            67999999999999999999985                                                244555678


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCcc----ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchh
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLV----FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEE  181 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~----~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~  181 (677)
                      ..|.||||+|+..|+.++|++|++.++...    +..+..|.||||+|+ ..|+.+++++|+++|++++..+.....   
T Consensus        35 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~~~~---  110 (232)
T 2rfa_A           35 AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAV-INQNVNLVRALLARGASVSARATGSVF---  110 (232)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCCSGGG---
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHH-HcCCHHHHHHHHhCCCCCCcccCCcce---
Confidence            889999999999999999999999997543    456778999999995 779999999999999999876543110   


Q ss_pred             hhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHH----HHHHhcCCCC--
Q 005790          182 HIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVV----KDLIASFDII--  255 (677)
Q Consensus       182 ~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eiv----k~Ll~~ga~i--  255 (677)
                         .......+..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++    ++|+++|+++  
T Consensus       111 ---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~  186 (232)
T 2rfa_A          111 ---HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHL  186 (232)
T ss_dssp             ---SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSS
T ss_pred             ---eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhh
Confidence               0111223345789999999999999999999999999 88999999999999999999988    9999999988  


Q ss_pred             ----CCCCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 005790          256 ----NSTDHQGNTPLHIAAYRGQPAVVEALILASP  286 (677)
Q Consensus       256 ----n~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~  286 (677)
                          +..|..|.||||+|+..|+.+++++|+++++
T Consensus       187 ~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~  221 (232)
T 2rfa_A          187 KSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK  221 (232)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence                5889999999999999999999999999884

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2e-33  Score=282.20  Aligned_cols=215  Identities=17%  Similarity=0.210  Sum_probs=160.5

Q ss_pred             hhcCCCChHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcc
Q 005790          103 IRAGYGGWLLYTAASAGDLGFVKQLLDKNPL---LVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGEL  179 (677)
Q Consensus       103 ~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~---~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~  179 (677)
                      .+|..|.||||+|+..|+.++|++|++.+..   .++..+..|.||||+|| ..|+.+++++|+++|++++..+..    
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~----   77 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV-ITNQPEIAEALLGAGCDPELRDFR----   77 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHH-HTTCHHHHHCCCSCCCCSCCCCTT----
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCCcCCC----
Confidence            4577888999999999999999988887753   46777888889888885 668888888888888888765543    


Q ss_pred             hhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCc-----cccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 005790          180 EEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDV-----LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI  254 (677)
Q Consensus       180 ~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~-----~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~  254 (677)
                                     |.||||+|+..|+.+++++|++.|++.     .+..+..|.||||+|+..|+.+++++|+++|++
T Consensus        78 ---------------g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  142 (236)
T 1ikn_D           78 ---------------GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD  142 (236)
T ss_dssp             ---------------CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ---------------CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                           368888888888888888888888642     356777888888888888888888888888888


Q ss_pred             CCCCCC-CCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccch
Q 005790          255 INSTDH-QGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNM  333 (677)
Q Consensus       255 in~~d~-~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~  333 (677)
                      ++..+. .|.||||+|+..|+.+++++|+++| ++                                             
T Consensus       143 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~---------------------------------------------  176 (236)
T 1ikn_D          143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-AD---------------------------------------------  176 (236)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CC---------------------------------------------
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CC---------------------------------------------
Confidence            888886 8888888888888888888888877 33                                             


Q ss_pred             hhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCcc--ccCCCCCcHHHHHhh
Q 005790          334 EDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN--VRDNDGMTTLDLLKQ  388 (677)
Q Consensus       334 ~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin--~~d~~G~TpL~~A~~  388 (677)
                         ++.+|..|.||||+|+..+ +.+++++|++ .|++..  .++..|.||.+.+..
T Consensus       177 ---~~~~~~~g~tpl~~A~~~~-~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          177 ---VNRVTYQGYSPYQLTWGRP-STRIQQQLGQ-LTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             ---SCCCCTTCCCGGGGCTTSS-CHHHHHHHHT-TSCGGGSSCCCCCTTTCCCCC--
T ss_pred             ---CCcccCCCCCHHHHHHccC-chHHHHHHHH-cchhhhhcCCccchHHHHhhhcc
Confidence               3444556666666666666 7777777777 777665  556666666655443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=2.1e-31  Score=260.21  Aligned_cols=191  Identities=25%  Similarity=0.306  Sum_probs=175.7

Q ss_pred             cchHHHHHHhcCCHHHHHHHHhcCC-CccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 005790          195 MNRAVHAAARGGNLKILKELLENCT-DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG  273 (677)
Q Consensus       195 ~~t~Lh~A~~~g~~eivk~LL~~ga-~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g  273 (677)
                      +.||||.|+..|+.++++.|+..+. ++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccHHHHHHHhccHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4699999999999999999999998 65 888999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790          274 QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT  353 (677)
Q Consensus       274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~  353 (677)
                      +.+++++|++.++.+++..+..|.||||+|+..          ++.+++++|++.+.    ++++.+|..|.||||+|+.
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~----------~~~~~v~~Ll~~g~----~~~~~~~~~g~t~L~~A~~  149 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEK----------GHIDNVKLLLEDGR----EDIDFQNDFGYTALIEAVG  149 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHT----------TCHHHHHHHHHHCC----CCTTCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHc----------CCHHHHHHHHHcCC----CCcCCCCCCCCCHHHHHHH
Confidence            999999999888789999999999999999994          55667777776653    3488999999999999999


Q ss_pred             CCCc-----HHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcC
Q 005790          354 GNVH-----LELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAG  406 (677)
Q Consensus       354 ~~~~-----~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~G  406 (677)
                      .+ .     .+++++|++ .|+|++.+|..|.||||+|+..++.+    ++++|+++|
T Consensus       150 ~~-~~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~G  201 (201)
T 3hra_A          150 LR-EGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTE----ISKILAQYN  201 (201)
T ss_dssp             SS-CCSHHHHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHTCC
T ss_pred             hc-cchhhHHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHh----HHHHHHhcC
Confidence            87 6     999999999 99999999999999999999999988    688888876

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=3e-32  Score=280.01  Aligned_cols=224  Identities=19%  Similarity=0.166  Sum_probs=175.9

Q ss_pred             ccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCch--
Q 005790           25 WYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSL--  102 (677)
Q Consensus        25 ~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~--  102 (677)
                      .|.||||+||..|+.++|+.||+.+++                                             .+.+++  
T Consensus        12 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~---------------------------------------------~~~~~~~~   46 (273)
T 2pnn_A           12 YDRRSIFDAVAQSNCQELESLLPFLQR---------------------------------------------SKKRLTDS   46 (273)
T ss_dssp             CCHHHHHHHHHTTCSSTTTTHHHHHHH---------------------------------------------SCCCTTSG
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHHHhh---------------------------------------------cccccCCc
Confidence            477999999999999999999986532                                             223332  


Q ss_pred             --hhcCCCChHHHHHHHc---CCHHHHHHHHHcCCCc------c----ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCC
Q 005790          103 --IRAGYGGWLLYTAASA---GDLGFVKQLLDKNPLL------V----FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV  167 (677)
Q Consensus       103 --~~d~~G~t~L~~Aa~~---g~~eivk~LL~~g~~~------~----~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Ga  167 (677)
                        ..|..|.||||+||..   |+.++|++|++.|+..      +    ...+..|.||||+|| ..|+.+++++|+++|+
T Consensus        47 ~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~-~~g~~~~v~~Ll~~ga  125 (273)
T 2pnn_A           47 EFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAI-ERRNMTLVTLLVENGA  125 (273)
T ss_dssp             GGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHH-HTTCHHHHHHHHHTTC
T ss_pred             ccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHH-HcCCHHHHHHHHHCCC
Confidence              3477899999999987   9999999999987531      1    225678999999995 7799999999999999


Q ss_pred             CcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHh---cCCCccccCCCCCCcHHHHHHHhCC---
Q 005790          168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLE---NCTDVLTYRDKQGSTILHAAAGRGQ---  241 (677)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~---~ga~~~~~~d~~g~TpL~~A~~~g~---  241 (677)
                      +++..+..+..     ........+..|.||||+|+..|+.++|++|++   +|+++ +.+|..|+||||+|+..|+   
T Consensus       126 ~~~~~~~~~~~-----~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~  199 (273)
T 2pnn_A          126 DVQAAANGDFF-----KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTV  199 (273)
T ss_dssp             CTTCCBCSGGG-----SSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCH
T ss_pred             CcCcccccccc-----ccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcch
Confidence            99987653210     000111222357899999999999999999999   99999 8899999999999999998   


Q ss_pred             ------HHHHHHHHhcCCCCC-------CCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchh
Q 005790          242 ------VEVVKDLIASFDIIN-------STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFL  300 (677)
Q Consensus       242 ------~eivk~Ll~~ga~in-------~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpL  300 (677)
                            .+++++|+++|++++       ..|..|.||||+|+..|+.+++++|+++|+.+.......+.+|-
T Consensus       200 ~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          200 DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             hHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence                  899999999999997       48999999999999999999999999999777777776666553

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=3.9e-31  Score=252.02  Aligned_cols=159  Identities=42%  Similarity=0.570  Sum_probs=142.3

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 005790          197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPA  276 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~  276 (677)
                      ++|+.|++.|+.++|++||++|+++ +.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            5799999999999999999999999 889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCC
Q 005790          277 VVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNV  356 (677)
Q Consensus       277 iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~  356 (677)
                      ++++|++.|+ +                                                +|.+|..|+||||+|+..+ 
T Consensus        85 ~v~~Ll~~ga-d------------------------------------------------vn~~d~~G~TpLh~A~~~g-  114 (169)
T 4gpm_A           85 VVKLLISKGA-D------------------------------------------------VNAKDSDGRTPLHHAAENG-  114 (169)
T ss_dssp             HHHHHHHTTC-C------------------------------------------------TTCCCTTSCCHHHHHHHTT-
T ss_pred             HHHHHHHCcC-C------------------------------------------------CCCCCCCCCCHHHHHHHcC-
Confidence            9999999883 2                                                5666888999999999988 


Q ss_pred             cHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCC
Q 005790          357 HLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGC  411 (677)
Q Consensus       357 ~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~  411 (677)
                      +.++|++|++ .|+|++.+|..|+||||+|+..++.+    ++++|+++||+++.
T Consensus       115 ~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~----iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          115 HKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEE----VVKLLEKQGGWLEH  164 (169)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHTC------
T ss_pred             CHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCcCC
Confidence            9999999999 89999999999999999999999977    78999999999875

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=5.2e-32  Score=275.37  Aligned_cols=209  Identities=16%  Similarity=0.107  Sum_probs=171.7

Q ss_pred             ccCcHHHHHHHcCCHHHH----HHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCC
Q 005790           25 WYASPIDWAAANGHYDLV----RELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKN  100 (677)
Q Consensus        25 ~g~TpL~~Aa~~G~~diV----~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~  100 (677)
                      ||+||||+||..|+.++|    ++|++.|++++..                                             
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~---------------------------------------------   35 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDS---------------------------------------------   35 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG---------------------------------------------
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccc---------------------------------------------
Confidence            578999999999999855    5555555554310                                             


Q ss_pred             chhhcCCCChHHHHHHHc---CCHHHHHHHHHcCCCccc----------cCCCCCCCHHHHHHHhcCCHHHHHHHHhcCC
Q 005790          101 SLIRAGYGGWLLYTAASA---GDLGFVKQLLDKNPLLVF----------GEGEYGVTDIFYAAARSKNCDVFRLIYDFAV  167 (677)
Q Consensus       101 ~~~~d~~G~t~L~~Aa~~---g~~eivk~LL~~g~~~~~----------~~~~~g~tpL~~AA~~~g~~evv~lLl~~Ga  167 (677)
                      ...+|..|.||||+|+..   |+.++|++|++.|+....          ..+..|.||||+|| ..|+.+++++|+++|+
T Consensus        36 ~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ga  114 (256)
T 2etb_A           36 AYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAI-EKRSLQCVKLLVENGA  114 (256)
T ss_dssp             GGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHH-HTTCHHHHHHHHHTTC
T ss_pred             cccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHH-HcCCHHHHHHHHHcCC
Confidence            001678899999999999   999999999999764321          23467999999985 7799999999999999


Q ss_pred             CcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHh---cCCCccccCCCCCCcHHHHHHH--hCCH
Q 005790          168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLE---NCTDVLTYRDKQGSTILHAAAG--RGQV  242 (677)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~---~ga~~~~~~d~~g~TpL~~A~~--~g~~  242 (677)
                      +++..+..+..      .......+..|.||||+|+..|+.+++++|++   +|+++ +.+|..|+||||+|+.  .++.
T Consensus       115 ~~~~~~~~~~~------~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~  187 (256)
T 2etb_A          115 DVHLRACGRFF------QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSP  187 (256)
T ss_dssp             CTTCCCCSGGG------SCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCH
T ss_pred             CCCcccccccc------cccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCc
Confidence            99977654210      00111122236899999999999999999999   99999 8899999999999999  8888


Q ss_pred             H-------HHHHHHhcCCCC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 005790          243 E-------VVKDLIASFDII-------NSTDHQGNTPLHIAAYRGQPAVVEALILASP  286 (677)
Q Consensus       243 e-------ivk~Ll~~ga~i-------n~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~  286 (677)
                      +       ++++|+++|+++       +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       188 ~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          188 ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            8       999999999999       8999999999999999999999999999884

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=2.1e-30  Score=252.98  Aligned_cols=192  Identities=22%  Similarity=0.243  Sum_probs=148.5

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      .++.||||.|+..|+.+.|+.|+..++.+++..+..|.||||+|| ..|+.+++++|+++|++++..+..          
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~----------   71 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNNDIEIAKALIDRGADINLQNSI----------   71 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCCTTCCCTT----------
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCC----------
Confidence            467888888888888888888888887777778888888888875 668888888888888887765543          


Q ss_pred             chhhhhhhccchHHHHHHhcCCHHHHHHHHhcC-CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcC-CCCCCCCCCCC
Q 005790          186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENC-TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASF-DIINSTDHQGN  263 (677)
Q Consensus       186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~g-a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~g-a~in~~d~~g~  263 (677)
                               |.||||+|+..|+.+++++|++.+ .++ +..+..|.||||+|+..|+.+++++|+++| ++++..|..|.
T Consensus        72 ---------g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~  141 (201)
T 3hra_A           72 ---------SDSPYLYAGAQGRTEILAYMLKHATPDL-NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY  141 (201)
T ss_dssp             ---------SCCHHHHHHHTTCHHHHHHHHHHSCCCT-TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSC
T ss_pred             ---------CCCHHHHHHHcCCHHHHHHHHhccCccc-ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCC
Confidence                     357888888888888888888444 455 677888888888888888888888888888 78888888888


Q ss_pred             cHHHHHHHcCC-----HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhh
Q 005790          264 TPLHIAAYRGQ-----PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIIN  338 (677)
Q Consensus       264 tpL~~A~~~g~-----~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in  338 (677)
                      ||||+|+..++     .+++++|++.| ++                                                ++
T Consensus       142 t~L~~A~~~~~~~~~~~~~v~~Ll~~g-a~------------------------------------------------~~  172 (201)
T 3hra_A          142 TALIEAVGLREGNQLYQDIVKLLMENG-AD------------------------------------------------QS  172 (201)
T ss_dssp             CHHHHHHHSSCCSHHHHHHHHHHHHTT-CC------------------------------------------------TT
T ss_pred             CHHHHHHHhccchhhHHHHHHHHHHCC-CC------------------------------------------------CC
Confidence            88888888777     77777777776 33                                                44


Q ss_pred             ccCCCCchHHHHHHhCCCcHHHHHHHhhCCC
Q 005790          339 AKNNDGRTALHMAITGNVHLELVQLLMSAPS  369 (677)
Q Consensus       339 ~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~G  369 (677)
                      .+|..|.||||+|+..+ +.+++++|++ +|
T Consensus       173 ~~~~~g~t~l~~A~~~~-~~~~~~~Ll~-~G  201 (201)
T 3hra_A          173 IKDNSGRTAMDYANQKG-YTEISKILAQ-YN  201 (201)
T ss_dssp             CCCTTSCCHHHHHHHHT-CHHHHHHHHT-CC
T ss_pred             ccCCCCCCHHHHHHHcC-CHhHHHHHHh-cC
Confidence            55666777777777766 7777777776 44

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.6e-31  Score=274.60  Aligned_cols=233  Identities=19%  Similarity=0.209  Sum_probs=145.3

Q ss_pred             CCCchhhcCCCChHHHHHHHcCCHHHHHHHHHc----CCCccc---cCCCCCCCHHHHHHHh--cCCHHHHHHHHhcCCC
Q 005790           98 GKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDK----NPLLVF---GEGEYGVTDIFYAAAR--SKNCDVFRLIYDFAVS  168 (677)
Q Consensus        98 g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~----g~~~~~---~~~~~g~tpL~~AA~~--~g~~evv~lLl~~Gad  168 (677)
                      ++..+..|..|.||||+||..|+.++|+.|++.    ++....   ..+..|.||||+||..  .|+.+++++|+++|++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            455667889999999999999999999999974    332211   4578999999999642  4999999999999986


Q ss_pred             cccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCC--------------CCCcHHH
Q 005790          169 PRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDK--------------QGSTILH  234 (677)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~--------------~g~TpL~  234 (677)
                      ++....        .........+..|.||||+|+..|+.++|++|+++|+++ +..+.              .|.||||
T Consensus        83 ~~~~~~--------~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~  153 (273)
T 2pnn_A           83 TDSLKQ--------FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLS  153 (273)
T ss_dssp             TTCHHH--------HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHH
T ss_pred             ccchhH--------HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHH
Confidence            542100        000000112234567777777777777777777777776 44554              5667777


Q ss_pred             HHHHhCCHHHHHHHHh---cCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHHhCCCCccccCCCCCchhhh
Q 005790          235 AAAGRGQVEVVKDLIA---SFDIINSTDHQGNTPLHIAAYRGQ---------PAVVEALILASPSMISVKNTSGETFLHS  302 (677)
Q Consensus       235 ~A~~~g~~eivk~Ll~---~ga~in~~d~~g~tpL~~A~~~g~---------~~iv~~LL~~g~~~~~~~~~~g~tpLh~  302 (677)
                      +|+..|+.++|++|++   +|++++.+|..|+||||+|+..|+         .+++++|++.| ++++...         
T Consensus       154 ~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~---------  223 (273)
T 2pnn_A          154 LAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPTL---------  223 (273)
T ss_dssp             HHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTC---------
T ss_pred             HHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhccccc---------
Confidence            7777777777777776   666777666667777777766665         45555555554 1111000         


Q ss_pred             hhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCC-CccccCCCCCc
Q 005790          303 AVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSI-NVNVRDNDGMT  381 (677)
Q Consensus       303 A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Ga-din~~d~~G~T  381 (677)
                                                      ..++.+|..|.||||+|+..+ +.++|++||+ +|+ |+......+.+
T Consensus       224 --------------------------------~~~~~~d~~g~TpL~~A~~~g-~~~iv~~Ll~-~ga~dp~~~~~~~~~  269 (273)
T 2pnn_A          224 --------------------------------KLEEITNRKGLTPLALAASSG-KIGVLAYILQ-REIHEPECRHAAAHH  269 (273)
T ss_dssp             --------------------------------CGGGCCCTTSCCHHHHHHHTT-CHHHHHHHHH-HHTC-----------
T ss_pred             --------------------------------ccccccCCCCCCHHHHHHHhC-hHHHHHHHHH-CCCCCchhhhhhhhh
Confidence                                            002457889999999999988 9999999999 888 88887777666


Q ss_pred             HH
Q 005790          382 TL  383 (677)
Q Consensus       382 pL  383 (677)
                      |-
T Consensus       270 ~~  271 (273)
T 2pnn_A          270 HH  271 (273)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.2e-30  Score=248.78  Aligned_cols=159  Identities=33%  Similarity=0.419  Sum_probs=142.8

Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchH
Q 005790          231 TILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTY  310 (677)
Q Consensus       231 TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~  310 (677)
                      ++|+.||+.|+.++|++||++|+++|.+|..|+||||+|+..++.+++++|++.|. +                      
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga-d----------------------   62 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA-D----------------------   62 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-C----------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc-c----------------------
Confidence            57999999999999999999999999999999999999999999999999998883 2                      


Q ss_pred             HHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCC
Q 005790          311 AFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRP  390 (677)
Q Consensus       311 ~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~  390 (677)
                                                ++.+|..|.||||+|+..+ +.++|++||+ .|+|+|.+|.+|+||||+|+..|
T Consensus        63 --------------------------~~~~d~~g~TpLh~A~~~g-~~~~v~~Ll~-~gadvn~~d~~G~TpLh~A~~~g  114 (169)
T 4gpm_A           63 --------------------------VNAKDSDGRTPLHHAAENG-HKEVVKLLIS-KGADVNAKDSDGRTPLHHAAENG  114 (169)
T ss_dssp             --------------------------TTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             --------------------------hhhhccCCCCHHHHHHHcC-CHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcC
Confidence                                      5566888999999999988 9999999999 99999999999999999999999


Q ss_pred             CCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCC
Q 005790          391 QSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSS  454 (677)
Q Consensus       391 ~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~  454 (677)
                      +.+    ++++|+++|++++.+|..|+|||++|+....          .+++++|+++||+++-
T Consensus       115 ~~~----~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~----------~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          115 HKE----VVKLLISKGADVNTSDSDGRTPLDLAREHGN----------EEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----------HHHHHHHHTC------
T ss_pred             CHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCC----------HHHHHHHHHCCCCcCC
Confidence            987    7899999999999999999999999988533          8899999999999864

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.6e-31  Score=270.17  Aligned_cols=195  Identities=20%  Similarity=0.225  Sum_probs=171.4

Q ss_pred             cchHHHHHHhcCCHH----HHHHHHhcCCCcccc----CCCCCCcHHHHHHHh---CCHHHHHHHHhcCCCCCCC-----
Q 005790          195 MNRAVHAAARGGNLK----ILKELLENCTDVLTY----RDKQGSTILHAAAGR---GQVEVVKDLIASFDIINST-----  258 (677)
Q Consensus       195 ~~t~Lh~A~~~g~~e----ivk~LL~~ga~~~~~----~d~~g~TpL~~A~~~---g~~eivk~Ll~~ga~in~~-----  258 (677)
                      |+||||.|+..|+.+    ++++|++.|+++ +.    .|..|+||||+|+..   |+.++|++|+++|++++..     
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            679999999999997    677888899998 55    899999999999999   9999999999999987643     


Q ss_pred             ------CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCC-------------CCchhhhhhhcCchHHHHHhhHHH
Q 005790          259 ------DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTS-------------GETFLHSAVSGFQTYAFRRLDRQV  319 (677)
Q Consensus       259 ------d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~-------------g~tpLh~A~~~~~~~~~~~L~~~~  319 (677)
                            |..|.||||+|+..|+.+++++|+++| ++++..+..             |.||||+|+..          ++.
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~----------~~~  149 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG-ADVHLRACGRFFQKHQGTCFYFGELPLSLAACT----------KQW  149 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT----------TCH
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccccccccccccccccCCCCHHHHHHHc----------CCH
Confidence                  367999999999999999999999998 678888876             99999999994          556


Q ss_pred             HHHHHHHcccccchhhhhhccCCCCchHHHHHHh--CCCcHH-------HHHHHhhCCCCCc-------cccCCCCCcHH
Q 005790          320 KLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT--GNVHLE-------LVQLLMSAPSINV-------NVRDNDGMTTL  383 (677)
Q Consensus       320 eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~--~~~~~e-------iv~lLL~~~Gadi-------n~~d~~G~TpL  383 (677)
                      +++++|++..  ..++++|.+|..|.||||+|+.  .+ +.+       ++++|++ .|+++       +.+|..|+|||
T Consensus       150 ~~v~~Ll~~~--~~ga~~n~~d~~g~TpLh~A~~~~~~-~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL  225 (256)
T 2etb_A          150 DVVTYLLENP--HQPASLEATDSLGNTVLHALVMIADN-SPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPL  225 (256)
T ss_dssp             HHHHHHHHCS--SCCCCTTCCCTTSCCHHHHHHHHCCS-CHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHH
T ss_pred             HHHHHHHhcc--ccCCCcCccCCCCCCHHHHHHHcccC-CchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHH
Confidence            7788887720  0235699999999999999998  66 888       9999999 99999       99999999999


Q ss_pred             HHHhhCCCCchHHHHHHHHHHcCCCC
Q 005790          384 DLLKQRPQSASSDILIRHLISAGGIF  409 (677)
Q Consensus       384 ~~A~~~~~~~~~~~lv~~Ll~~Gadi  409 (677)
                      |+|+..|+.+    ++++|+++|++.
T Consensus       226 ~~A~~~g~~~----~v~~Ll~~g~~~  247 (256)
T 2etb_A          226 KLAAKEGKIE----IFRHILQREFSG  247 (256)
T ss_dssp             HHHHHTTCHH----HHHHHHHHHHHH
T ss_pred             HHHHHhCCHH----HHHHHHhCCCCC
Confidence            9999999988    688888888654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.6e-30  Score=264.85  Aligned_cols=210  Identities=18%  Similarity=0.103  Sum_probs=170.5

Q ss_pred             ccCcHHHHHHHcCCHHHHHHHHH----hcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCC
Q 005790           25 WYASPIDWAAANGHYDLVRELLR----IDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKN  100 (677)
Q Consensus        25 ~g~TpL~~Aa~~G~~diV~~LL~----~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~  100 (677)
                      +++||||.||+.|+.++|+.|++    .|++++..                                             
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~---------------------------------------------   38 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE---------------------------------------------   38 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG---------------------------------------------
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh---------------------------------------------
Confidence            47799999999999996665555    66665422                                             


Q ss_pred             chhhcCCCChHHHHHH---HcCCHHHHHHHHHcCCC----------ccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCC
Q 005790          101 SLIRAGYGGWLLYTAA---SAGDLGFVKQLLDKNPL----------LVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV  167 (677)
Q Consensus       101 ~~~~d~~G~t~L~~Aa---~~g~~eivk~LL~~g~~----------~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Ga  167 (677)
                      ....+..|.||||+|+   ..|+.++|++|++.++.          .....+..|.||||+|| ..|+.++|++|+++|+
T Consensus        39 ~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ga  117 (260)
T 3jxi_A           39 EFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI-ERRCKHYVELLVEKGA  117 (260)
T ss_dssp             GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHH-HTTCHHHHHHHHHTTC
T ss_pred             hhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHH-HcCCHHHHHHHHhCCC
Confidence            0123467999999999   67999999999998742          23445568999999985 7799999999999999


Q ss_pred             CcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHh---cCCCccccCCCCCCcHHHHHHHhCC---
Q 005790          168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLE---NCTDVLTYRDKQGSTILHAAAGRGQ---  241 (677)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~---~ga~~~~~~d~~g~TpL~~A~~~g~---  241 (677)
                      +++..+......     .......+..|.||||+|+..|+.++|++|++   +|+++ +.+|..|+||||+|+..++   
T Consensus       118 ~~~~~~~~~~~~-----~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~  191 (260)
T 3jxi_A          118 DVHAQARGRFFQ-----PKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTR  191 (260)
T ss_dssp             CTTCCCEECCCS-----SSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSH
T ss_pred             CcCccccccccC-----cccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCch
Confidence            999776421100     00011122346899999999999999999999   99999 8899999999999999888   


Q ss_pred             ------HHHHHHHHhcCCCC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 005790          242 ------VEVVKDLIASFDII-------NSTDHQGNTPLHIAAYRGQPAVVEALILASP  286 (677)
Q Consensus       242 ------~eivk~Ll~~ga~i-------n~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~  286 (677)
                            .+++++|+++|+++       +..|..|.||||+|+..|+.+++++||++|+
T Consensus       192 ~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  249 (260)
T 3jxi_A          192 ENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI  249 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence                  79999999999998       6799999999999999999999999999984

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=5.4e-31  Score=282.73  Aligned_cols=301  Identities=13%  Similarity=-0.009  Sum_probs=203.7

Q ss_pred             HHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHh-hchHHHHHHHHhhhhcCCCCchhhcCCCChH
Q 005790           33 AAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAK-CRSKVARKLFLECKSKNGKNSLIRAGYGGWL  111 (677)
Q Consensus        33 Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~-~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~  111 (677)
                      +...+..+++..++....+++..              ...+.++++.. .+...+.++|+.    .|.+       +.||
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~ll~~~~a~~~~~~~~~~~~l~~----~g~~-------~~T~   95 (376)
T 2aja_A           41 LMTLSYKEAIHIFLPGTKNMEQV--------------RQLLCLYYAHYNRNAKQLWSDAHK----KGIK-------SEVI   95 (376)
T ss_dssp             HHHSCHHHHHHHCCCCSSHHHHH--------------HHHHHHHHHHTTTTCTTHHHHHHH----HTCC-------HHHH
T ss_pred             hhhccHHHHHHHHhcCCCCHHHH--------------HHHHHHHHHHhcCCCHHHHHHHHH----cCCC-------cCCH
Confidence            33466678888888766554321              12344555555 456677777776    4443       4599


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhh
Q 005790          112 LYTAASAGDLGFVKQLLDKNPLLV--FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSV  189 (677)
Q Consensus       112 L~~Aa~~g~~eivk~LL~~g~~~~--~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~  189 (677)
                      ||+|+..|+.++|++|++.++...  ...+..|.||||+|| ..|+.++|++|+++|+++...+....            
T Consensus        96 Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa-~~G~~eiv~~Ll~~gad~~~~~i~~~------------  162 (376)
T 2aja_A           96 CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA-ENGHLHVLNRLCELAPTEIMAMIQAE------------  162 (376)
T ss_dssp             HHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH-HTTCHHHHHHHHHSCTTTHHHHHSHH------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH-HcCCHHHHHHHHhCCCCccccccCCC------------
Confidence            999999999999999999987321  133456788999985 77999999999999987443222110            


Q ss_pred             hhhhccchHHHHHHhcCCHHHHHHHHhcCCCcccc--CCCCCCcHHHHHH-HhCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 005790          190 YKWEMMNRAVHAAARGGNLKILKELLENCTDVLTY--RDKQGSTILHAAA-GRGQVEVVKDLIASFDIINSTDHQGNTPL  266 (677)
Q Consensus       190 ~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~--~d~~g~TpL~~A~-~~g~~eivk~Ll~~ga~in~~d~~g~tpL  266 (677)
                           ..||||+|+..|+.++|++|+++|+++ +.  .|..|.||||+|+ ..|+.++|++|+++|++       |.|||
T Consensus       163 -----~~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL  229 (376)
T 2aja_A          163 -----NYHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAE  229 (376)
T ss_dssp             -----HHHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHH
T ss_pred             -----CCCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHH
Confidence                 058999999999999999999999987 44  6778999999999 99999999999998753       78999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHH------------HHh-----hHHHHHHHHHHccc
Q 005790          267 HIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAF------------RRL-----DRQVKLMKQLASGQ  329 (677)
Q Consensus       267 ~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~------------~~L-----~~~~eiv~~Ll~~~  329 (677)
                      |+|+..|+.+++++|++.| ++++..+    ++++.|+..|+.+++            +.+     ....+.+++|++..
T Consensus       230 ~~Aa~~g~~evv~lL~~~g-a~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~  304 (376)
T 2aja_A          230 IHEFEYGEKYVNPFIARHV-NRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP  304 (376)
T ss_dssp             HCTTTTTTTTHHHHHHHHH-HHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTST
T ss_pred             HHHHHCCCHHHHHHHHhcC-ccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhCh
Confidence            9999999999999999988 4444433    477788777765432            111     22355667776644


Q ss_pred             ccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCch
Q 005790          330 IFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSAS  394 (677)
Q Consensus       330 ~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~  394 (677)
                      .+..-.........+.||||+|+..| +.++|++|++ .|   ..++..|+|++.+|...|..+.
T Consensus       305 ~vk~l~~~g~~~n~~~~~L~~A~~~g-~~e~v~lLl~-~~---~v~~~~~~~~~~~~~~~~~~~~  364 (376)
T 2aja_A          305 GIKALAPTATIPGDANELLRLALRLG-NQGACALLLS-IP---SVLALTKANNYYINETGGRLDL  364 (376)
T ss_dssp             TTGGGSSCCSSTTCCCHHHHHHHHHT-CTTHHHHHTT-SH---HHHHSCC---------------
T ss_pred             hhhhhhccCCCCCCccHHHHHHHHcC-cHHHHHHHHc-Ch---HHHHHHHHhccccccccccccH
Confidence            32221111222345678999999988 9999999998 44   6677889999999999998874

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=4.1e-29  Score=257.60  Aligned_cols=194  Identities=22%  Similarity=0.196  Sum_probs=170.1

Q ss_pred             ccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHH
Q 005790           71 DEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAA  150 (677)
Q Consensus        71 ~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA  150 (677)
                      ..+++|.|+..++...++.+++...  ...++..|..|.||||+||..|+.++|++|++.|+.+++..+..|.||||+|+
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~--~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLL--DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHH--HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHH--hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence            3456677777777777777766211  12267789999999999999999999999999998888899999999999986


Q ss_pred             H----hcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCC
Q 005790          151 A----RSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRD  226 (677)
Q Consensus       151 ~----~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d  226 (677)
                      .    ..++.+++++|++.|++++..+..                   |.||||+|+..|+.++|++|+++|+++ +.+|
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~-------------------g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d  213 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRLGNINAKASQA-------------------GQTALMLAVSHGRVDVVKALLACEADV-NVQD  213 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHHSCTTCCCTTT-------------------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred             HHHhhhhhhHHHHHHHHHcCCCccccCCC-------------------CCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCC
Confidence            3    458899999999999877654433                   479999999999999999999999999 8899


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 005790          227 KQGSTILHAAAGRGQVEVVKDLIA-SFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASP  286 (677)
Q Consensus       227 ~~g~TpL~~A~~~g~~eivk~Ll~-~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~  286 (677)
                      ..|+||||+|+..|+.++|++|++ .|++++..|..|.||||+|+..|+.+++++|+++..
T Consensus       214 ~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          214 DDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            999999999999999999999999 899999999999999999999999999999999863

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=9.3e-30  Score=259.19  Aligned_cols=197  Identities=20%  Similarity=0.241  Sum_probs=166.8

Q ss_pred             ccchHHHHHHhcCCHHH----HHHHHhcCCCccccCC----CCCCcHHHHHH---HhCCHHHHHHHHhcCCC--------
Q 005790          194 MMNRAVHAAARGGNLKI----LKELLENCTDVLTYRD----KQGSTILHAAA---GRGQVEVVKDLIASFDI--------  254 (677)
Q Consensus       194 ~~~t~Lh~A~~~g~~ei----vk~LL~~ga~~~~~~d----~~g~TpL~~A~---~~g~~eivk~Ll~~ga~--------  254 (677)
                      .++++||.|+..|+.+.    +++|++.|+++ +..+    ..|.||||+|+   ..|+.++|++|+++|++        
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            35799999999999995    55555599988 4343    77999999999   77999999999998854        


Q ss_pred             ---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccC--------------CCCCchhhhhhhcCchHHHHHhhH
Q 005790          255 ---INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKN--------------TSGETFLHSAVSGFQTYAFRRLDR  317 (677)
Q Consensus       255 ---in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~--------------~~g~tpLh~A~~~~~~~~~~~L~~  317 (677)
                         ++..|..|.||||+|+..|+.++|++|++.| ++++..+              ..|.||||+|+..          +
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~----------g  151 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG-ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT----------N  151 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHT----------T
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCC-CCcCccccccccCcccccccccCCCCHHHHHHHc----------C
Confidence               4455568999999999999999999999998 6788888              6899999999994          5


Q ss_pred             HHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCc---------HHHHHHHhhCCCCCc-------cccCCCCCc
Q 005790          318 QVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVH---------LELVQLLMSAPSINV-------NVRDNDGMT  381 (677)
Q Consensus       318 ~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~---------~eiv~lLL~~~Gadi-------n~~d~~G~T  381 (677)
                      +.+++++|++.+  ..+++++.+|..|.||||+|+..+ +         .+++++|++ .|+++       +.+|..|+|
T Consensus       152 ~~~~v~~Ll~~~--~~ga~~~~~d~~g~TpLh~A~~~~-~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~t  227 (260)
T 3jxi_A          152 QPHIVHYLTENG--HKQADLRRQDSRGNTVLHALVAIA-DNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLS  227 (260)
T ss_dssp             CHHHHHHHHHCS--SCCCCTTCCCTTSCCHHHHHHHHC-CSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCC
T ss_pred             CHHHHHHHHhcc--ccCCCCcccCCCCCcHHHHHHHhc-cCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCC
Confidence            567777887721  023569999999999999999866 5         799999999 99999       779999999


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHcCCCCC
Q 005790          382 TLDLLKQRPQSASSDILIRHLISAGGIFG  410 (677)
Q Consensus       382 pL~~A~~~~~~~~~~~lv~~Ll~~Gadin  410 (677)
                      |||+|+..|+.+    ++++|+++|++..
T Consensus       228 pL~~A~~~g~~~----~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          228 PLMMAAKTGKIG----IFQHIIRREIADA  252 (260)
T ss_dssp             HHHHHHHTTCHH----HHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHH----HHHHHHHhCCCcc
Confidence            999999999988    6888999887654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.2e-28  Score=234.72  Aligned_cols=169  Identities=22%  Similarity=0.242  Sum_probs=148.2

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP  275 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~  275 (677)
                      .+|||.|+..|+.++++.|++.+.+..+..+..|+||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence            58999999999999999999999986588899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCC
Q 005790          276 AVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGN  355 (677)
Q Consensus       276 ~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~  355 (677)
                      +++++|++.+. +                                                ++.+|..|.||||+|+..+
T Consensus        83 ~~v~~Ll~~g~-~------------------------------------------------~~~~~~~g~t~L~~A~~~~  113 (172)
T 3v30_A           83 DIVGLLLERDV-D------------------------------------------------INIYDWNGGTPLLYAVRGN  113 (172)
T ss_dssp             HHHHHHHTTTC-C------------------------------------------------TTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCC-C------------------------------------------------CCCCCCCCCCHHHHHHHcC
Confidence            99999998873 2                                                5556788899999999988


Q ss_pred             CcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCch
Q 005790          356 VHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRA  419 (677)
Q Consensus       356 ~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~  419 (677)
                       +.+++++|++ .|++++.+|..|.||||+|+..++.+    ++++|+++|+++...+..|.||
T Consensus       114 -~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~----~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          114 -HVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRK----VQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             -CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHHHHHHSCC-------
T ss_pred             -CHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHH----HHHHHHHHHHHHhcccCCCCCC
Confidence             9999999999 89999999999999999999999977    6888889999998888888876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=4.7e-28  Score=230.60  Aligned_cols=170  Identities=24%  Similarity=0.282  Sum_probs=150.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP  187 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~  187 (677)
                      +.||||+|+..|+.++|++|++.++..++..+..|.||||+|| ..|+.+++++|+++|++++..+..            
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~------------   68 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWAS-AFGEIETVRFLLEWGADPHILAKE------------   68 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHH-HTTCHHHHHHHHHHTCCTTCCCTT------------
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCchhhccc------------
Confidence            4689999999999999999999998778889999999999985 779999999999999998876554            


Q ss_pred             hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790          188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH  267 (677)
Q Consensus       188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~  267 (677)
                             |.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||
T Consensus        69 -------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  140 (172)
T 3v30_A           69 -------RESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD  140 (172)
T ss_dssp             -------CCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             -------CCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence                   368999999999999999999999998 789999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhCCCCccccCCCCCch
Q 005790          268 IAAYRGQPAVVEALILASPSMISVKNTSGETF  299 (677)
Q Consensus       268 ~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tp  299 (677)
                      +|+..|+.+++++|++++ .+....+..|.||
T Consensus       141 ~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~~p  171 (172)
T 3v30_A          141 LAVALGYRKVQQVIENHI-LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHTCHHHHHHHHHHH-HHHSCC-------
T ss_pred             HHHHhCcHHHHHHHHHHH-HHHhcccCCCCCC
Confidence            999999999999999998 4566667666665

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.5e-29  Score=253.60  Aligned_cols=199  Identities=23%  Similarity=0.173  Sum_probs=167.2

Q ss_pred             HHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH
Q 005790          159 FRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAG  238 (677)
Q Consensus       159 v~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~  238 (677)
                      ++.|+++|++++..+..+..                +.||||+|+..|+.++|++|++.|+++ +..|..|+||||+|+.
T Consensus         1 v~~ll~~~~~~~~~~~~~~~----------------~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~   63 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLN----------------PLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAIC   63 (229)
T ss_dssp             ---------CCCCCCCTTSC----------------HHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHH
T ss_pred             CeehhccCCCCccccccccc----------------hhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHH
Confidence            56789999998876654432                469999999999999999999999998 7899999999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccC-CCCCchhhhh--hhcCchHHHHHh
Q 005790          239 RGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKN-TSGETFLHSA--VSGFQTYAFRRL  315 (677)
Q Consensus       239 ~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~-~~g~tpLh~A--~~~~~~~~~~~L  315 (677)
                      .|+.++|++|+++|++++..|..|+||||+|+..|+.+++++|++.| ++++..+ ..|.||||+|  +.          
T Consensus        64 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~a~~----------  132 (229)
T 2vge_A           64 GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG-AAIFATTLSDGATAFEKCDPYR----------  132 (229)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCSSTTCCTGGGCCTTS----------
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHh----------
Confidence            99999999999999999999999999999999999999999999998 6677775 6999999999  77          


Q ss_pred             hHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCC--ccccCCCCCcHHHHHhhCCCCc
Q 005790          316 DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSIN--VNVRDNDGMTTLDLLKQRPQSA  393 (677)
Q Consensus       316 ~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gad--in~~d~~G~TpL~~A~~~~~~~  393 (677)
                      .++.+++++|++.     +++++.+|..|.|||+.++..+    .+++|++ .|++  ++.+|..|+||||+|+..|+.+
T Consensus       133 ~~~~~~v~~Ll~~-----ga~~~~~~~~~~~~l~~~~~~~----~~~~ll~-~ga~~~~~~~d~~G~TpL~~A~~~g~~~  202 (229)
T 2vge_A          133 EGYADCATYLADV-----EQSMGLMNSGAVYALWDYSAEF----GDELSFR-EGESVTVLRRDGPEETDWWWAALHGQEG  202 (229)
T ss_dssp             TTHHHHHHHHHHH-----HHHTTTSGGGEEEESSCBCCSS----TTBCCBC-TTCEEEEEESSCTTCSSEEEEEETTEEE
T ss_pred             cChHHHHHHHHHc-----CCCcccccCCchHHHHHHhhcc----ccccCcc-ccccccccccCCCcccHHHHHHHcCCcc
Confidence            5667777777665     4679999999999999766544    2368888 8999  7788999999999999999998


Q ss_pred             hH
Q 005790          394 SS  395 (677)
Q Consensus       394 ~~  395 (677)
                      ++
T Consensus       203 ~v  204 (229)
T 2vge_A          203 YV  204 (229)
T ss_dssp             EE
T ss_pred             ee
Confidence            63

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.3e-27  Score=231.95  Aligned_cols=163  Identities=19%  Similarity=0.153  Sum_probs=151.4

Q ss_pred             chhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcch
Q 005790          101 SLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELE  180 (677)
Q Consensus       101 ~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~  180 (677)
                      ++.+|..|.||||+||..|+.++|++|++.++ +++..+..|.||||+|+ ..|+.+++++|+++|++++..+..     
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~-----  100 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFD-KLEDKDIEGSTALIWAV-KNNRLGIAEKLLSKGSNVNTKDFS-----  100 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHC-CTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHTCCTTCCCTT-----
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcc-ccccccccCccHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCC-----
Confidence            45678899999999999999999999999987 56778889999999985 779999999999999998876544     


Q ss_pred             hhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCC
Q 005790          181 EHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDH  260 (677)
Q Consensus       181 ~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~  260 (677)
                                    |.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..|.
T Consensus       101 --------------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  165 (192)
T 2rfm_A          101 --------------GKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL  165 (192)
T ss_dssp             --------------SCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT
T ss_pred             --------------CCcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence                          479999999999999999999999999 78999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhC
Q 005790          261 QGNTPLHIAAYRGQPAVVEALILAS  285 (677)
Q Consensus       261 ~g~tpL~~A~~~g~~~iv~~LL~~g  285 (677)
                      .|.||||+|+..|+.+++++|++.+
T Consensus       166 ~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          166 TGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            9999999999999999999999875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=4.7e-28  Score=249.67  Aligned_cols=193  Identities=19%  Similarity=0.261  Sum_probs=125.9

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCC--ccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHHc
Q 005790          196 NRAVHAAARGGNLKILKELLENCTD--VLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD-IINSTDHQGNTPLHIAAYR  272 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~--~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga-~in~~d~~g~tpL~~A~~~  272 (677)
                      .+++|.|+..|+.+.++.+++.+.+  + +..|..|+||||+|+..|+.++|++|+++|+ +++..+..|.||||+|+..
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~-n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVV-NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHH-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcC-cCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            4455555555555555555554443  2 4455555555555555555555555555554 5555555555555555511


Q ss_pred             CCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHH
Q 005790          273 GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI  352 (677)
Q Consensus       273 g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~  352 (677)
                      ..                             ..          .+..+++++|++.+     ++++..+..|.||||+|+
T Consensus       156 ~~-----------------------------~~----------~~~~~~v~~Ll~~g-----~~~~~~~~~g~tpLh~A~  191 (276)
T 4hbd_A          156 TL-----------------------------KT----------QDDIETVLQLFRLG-----NINAKASQAGQTALMLAV  191 (276)
T ss_dssp             CC-----------------------------CS----------HHHHHHHHHHHHHS-----CTTCCCTTTCCCHHHHHH
T ss_pred             Hh-----------------------------hh----------hhhHHHHHHHHHcC-----CCccccCCCCCCHHHHHH
Confidence            00                             01          23444444444433     224556677888888888


Q ss_pred             hCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHH-cCCCCCCCcccCCchHHHHHHHhCCCC
Q 005790          353 TGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLIS-AGGIFGCQDYSARRAIASHIKMLGNGS  431 (677)
Q Consensus       353 ~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~-~Gadin~~d~~G~T~L~~al~~~~~~~  431 (677)
                      ..+ +.++|++|++ .|+|+|.+|..|+||||+|+..|+.+    ++++|++ .|++++.+|..|+|||++|+....   
T Consensus       192 ~~g-~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~----iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~---  262 (276)
T 4hbd_A          192 SHG-RVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKE----IAGLLLAVPSCDISLTDRDGSTALMVALDAGQ---  262 (276)
T ss_dssp             HTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC---
T ss_pred             HcC-CHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHH----HHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC---
Confidence            877 8888888888 78888888888888888888888866    6788887 788888888888888888887533   


Q ss_pred             CCCCccchhhHHHHHHcC
Q 005790          432 SPGTSFRISDTEIFLYTG  449 (677)
Q Consensus       432 ~~~~~~~~~~v~~LL~~G  449 (677)
                             .+++++|++++
T Consensus       263 -------~~iv~~Ll~~~  273 (276)
T 4hbd_A          263 -------SEIASMLYSRM  273 (276)
T ss_dssp             -------HHHHHHHHHHC
T ss_pred             -------HHHHHHHHhcc
Confidence                   77888888764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=1.3e-27  Score=225.02  Aligned_cols=156  Identities=25%  Similarity=0.359  Sum_probs=135.7

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP  275 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~  275 (677)
                      .||||.|+..|+.+++++|+++|+++ +..+..|.||||+|+. |+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            58999999999999999999999998 7789999999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCC
Q 005790          276 AVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGN  355 (677)
Q Consensus       276 ~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~  355 (677)
                      +++++|++.| .+                                                ++.+|..|.||||+|+..+
T Consensus        84 ~~v~~Ll~~g-~~------------------------------------------------~~~~~~~g~t~L~~A~~~~  114 (162)
T 1ihb_A           84 DTLQTLLEFQ-AD------------------------------------------------VNIEDNEGNLPLHLAAKEG  114 (162)
T ss_dssp             HHHHHHHHTT-CC------------------------------------------------TTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcC-CC------------------------------------------------CCCcCCCCCCHHHHHHHcC
Confidence            9999999887 33                                                4555677888888888877


Q ss_pred             CcHHHHHHHhhCCCCC-ccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCC
Q 005790          356 VHLELVQLLMSAPSIN-VNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI  408 (677)
Q Consensus       356 ~~~eiv~lLL~~~Gad-in~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gad  408 (677)
                       +.+++++|++ .|++ ++.+|..|.||||+|+..++.+    ++++|+++|||
T Consensus       115 -~~~~v~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~GAd  162 (162)
T 1ihb_A          115 -HLRVVEFLVK-HTASNVGHRNHKGDTACDLARLYGRNE----VVSLMQANGAG  162 (162)
T ss_dssp             -CHHHHHHHHH-HSCCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTC--
T ss_pred             -CHHHHHHHHH-ccCCCCCCcCCCCCcHHHHHHHcCCHH----HHHHHHHhCCC
Confidence             8888888888 7877 5888888888888888888876    68888888875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=3.9e-27  Score=223.93  Aligned_cols=157  Identities=33%  Similarity=0.452  Sum_probs=140.7

Q ss_pred             ccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 005790          194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG  273 (677)
Q Consensus       194 ~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g  273 (677)
                      .+.++|+.|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG   91 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            3468999999999999999999999998 778999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790          274 QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT  353 (677)
Q Consensus       274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~  353 (677)
                      +.+++++|++.|. +                                                ++.+|..|.||||+|+.
T Consensus        92 ~~~~~~~Ll~~g~-~------------------------------------------------~~~~~~~g~t~L~~A~~  122 (169)
T 2y1l_E           92 HLEIVEVLLKNGA-D------------------------------------------------VNANDMEGHTPLHLAAM  122 (169)
T ss_dssp             CHHHHHHHHHTTC-C------------------------------------------------TTCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHHHcCC-C------------------------------------------------CCCCCCCCCCHHHHHHH
Confidence            9999999999873 2                                                45567788899999998


Q ss_pred             CCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcC
Q 005790          354 GNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAG  406 (677)
Q Consensus       354 ~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~G  406 (677)
                      .+ +.+++++|++ .|++++.+|..|.|||++|+..++.+    ++++|++.|
T Consensus       123 ~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~L~~~G  169 (169)
T 2y1l_E          123 FG-HLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNED----LAEILQKLN  169 (169)
T ss_dssp             TT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHTC-
T ss_pred             cC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHH----HHHHHHHcC
Confidence            88 9999999999 89999999999999999999999877    677777765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=2e-30  Score=278.31  Aligned_cols=286  Identities=18%  Similarity=0.118  Sum_probs=195.3

Q ss_pred             hchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHH-cCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHH
Q 005790           81 CRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAAS-AGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVF  159 (677)
Q Consensus        81 ~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~-~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv  159 (677)
                      .+..++..+++.    ...+++.  ..+.+++++|.. .++.+++++|++++..        +.||||+|| ..|+.++|
T Consensus        44 ~~~~~~~~~~~~----~~~~~~~--~~~ll~~~~a~~~~~~~~~~~~l~~~g~~--------~~T~Lh~Aa-~~G~~e~v  108 (376)
T 2aja_A           44 LSYKEAIHIFLP----GTKNMEQ--VRQLLCLYYAHYNRNAKQLWSDAHKKGIK--------SEVICFVAA-ITGCSSAL  108 (376)
T ss_dssp             SCHHHHHHHCCC----CSSHHHH--HHHHHHHHHHHTTTTCTTHHHHHHHHTCC--------HHHHHHHHH-HHCCHHHH
T ss_pred             ccHHHHHHHHhc----CCCCHHH--HHHHHHHHHHHhcCCCHHHHHHHHHcCCC--------cCCHHHHHH-HcCCHHHH
Confidence            344555555554    3333332  234578888887 5889999999998752        459999996 77999999


Q ss_pred             HHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCcc--ccCCCCCCcHHHHHH
Q 005790          160 RLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVL--TYRDKQGSTILHAAA  237 (677)
Q Consensus       160 ~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~--~~~d~~g~TpL~~A~  237 (677)
                      ++|+++|+.....+...                ..+.||||+|+..|+.++|++|+++|+++.  +..+.+ .||||+|+
T Consensus       109 ~~Ll~~ga~~~~~~~~~----------------~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa  171 (376)
T 2aja_A          109 DTLCLLLTSDEIVKVIQ----------------AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA  171 (376)
T ss_dssp             HHHTTC--CCSSCC--C----------------HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHhc----------------cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence            99999998332211110                113589999999999999999999997521  222223 89999999


Q ss_pred             HhCCHHHHHHHHhcCCCCCC--CCCCCCcHHHHHH-HcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHH
Q 005790          238 GRGQVEVVKDLIASFDIINS--TDHQGNTPLHIAA-YRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR  314 (677)
Q Consensus       238 ~~g~~eivk~Ll~~ga~in~--~d~~g~tpL~~A~-~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~  314 (677)
                      ..|+.++|++|+++|++++.  .|..|.||||+|+ ..|+.++|++|++.|.        .|.||||+|+..|+.++++.
T Consensus       172 ~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~l  243 (376)
T 2aja_A          172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPF  243 (376)
T ss_dssp             HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHH
T ss_pred             HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHH
Confidence            99999999999999999887  8888999999999 9999999999998662        38899999999999999999


Q ss_pred             hhHHHHHHHHHHcccccchhhhhhccCCCCch-------------HHHHHHhCC--CcHHHHHHHhhC--------CCCC
Q 005790          315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRT-------------ALHMAITGN--VHLELVQLLMSA--------PSIN  371 (677)
Q Consensus       315 L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~T-------------pLh~A~~~~--~~~eiv~lLL~~--------~Gad  371 (677)
                      |.....-+..--. .       +......|..             .+...+..+  ...+.+++|++.        .|++
T Consensus       244 L~~~ga~~~~~~~-~-------l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~  315 (376)
T 2aja_A          244 IARHVNRLKEMHD-A-------FKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI  315 (376)
T ss_dssp             HHHHHHHHHHHHT-T-------TTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSS
T ss_pred             HHhcCcccccccH-H-------HHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCC
Confidence            8665443322110 0       1111111111             111111111  156778888762        2444


Q ss_pred             ccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHH
Q 005790          372 VNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIK  425 (677)
Q Consensus       372 in~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~  425 (677)
                      +|    .+.||||+|+..|+.+    ++++|++.|   ..++..|.|++.++-.
T Consensus       316 ~n----~~~~~L~~A~~~g~~e----~v~lLl~~~---~v~~~~~~~~~~~~~~  358 (376)
T 2aja_A          316 PG----DANELLRLALRLGNQG----ACALLLSIP---SVLALTKANNYYINET  358 (376)
T ss_dssp             TT----CCCHHHHHHHHHTCTT----HHHHHTTSH---HHHHSCC---------
T ss_pred             CC----CccHHHHHHHHcCcHH----HHHHHHcCh---HHHHHHHHhccccccc
Confidence            43    5678999999999998    688888776   4466778888766443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.6e-27  Score=231.36  Aligned_cols=157  Identities=22%  Similarity=0.271  Sum_probs=109.3

Q ss_pred             ccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 005790          194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG  273 (677)
Q Consensus       194 ~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g  273 (677)
                      .|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  112 (192)
T 2rfm_A           34 YNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG  112 (192)
T ss_dssp             TCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence            3455666666666666666666555555 445555556666666666666666666655555555555556666666555


Q ss_pred             CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790          274 QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT  353 (677)
Q Consensus       274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~  353 (677)
                      +.+++++|++.|                                                 ++++.+|..|.||||+|+.
T Consensus       113 ~~~~v~~Ll~~g-------------------------------------------------~~~~~~~~~g~t~L~~A~~  143 (192)
T 2rfm_A          113 YSEMSYFLLEHG-------------------------------------------------ANVNDRNLEGETPLIVASK  143 (192)
T ss_dssp             CHHHHHHHHHTT-------------------------------------------------CCSSCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHCC-------------------------------------------------CCCCCCCCCCCCHHHHHHH
Confidence            555555555554                                                 2266678889999999999


Q ss_pred             CCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcC
Q 005790          354 GNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAG  406 (677)
Q Consensus       354 ~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~G  406 (677)
                      .+ +.+++++|++ .|++++.+|..|.||||+|+..++.+    ++++|+++|
T Consensus       144 ~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~----~v~~Ll~~~  190 (192)
T 2rfm_A          144 YG-RSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQE----VIKIFTEVR  190 (192)
T ss_dssp             HT-CHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHHHH
T ss_pred             cC-CHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHH----HHHHHHhcc
Confidence            88 9999999999 89999999999999999999999987    566666553

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=6.7e-27  Score=221.46  Aligned_cols=159  Identities=21%  Similarity=0.245  Sum_probs=147.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      +.|.||||+|+..|+.++|++|++.++ +++..+..|.||||+|+ ..|+.+++++|+++|++++..+..          
T Consensus         1 G~~~t~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~----------   68 (167)
T 3v31_A            1 GANSLSVHQLAAQGEMLYLATRIEQEN-VINHTDEEGFTPLMWAA-AHGQIAVVEFLLQNGADPQLLGKG----------   68 (167)
T ss_dssp             CTTCCCHHHHHHTTCHHHHHHHHHHSS-CTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT----------
T ss_pred             CCCcchHHHHHHCCCHHHHHHHHHcCC-CcCCCCCCCCCHHHHHH-HCCCHHHHHHHHHcCCCCCCcCCC----------
Confidence            358899999999999999999999986 57788999999999985 779999999999999998876544          


Q ss_pred             chhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 005790          186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP  265 (677)
Q Consensus       186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp  265 (677)
                               |.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus        69 ---------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  138 (167)
T 3v31_A           69 ---------RESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS  138 (167)
T ss_dssp             ---------CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ---------CCcHHHHHHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence                     368999999999999999999999999 7889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCC
Q 005790          266 LHIAAYRGQPAVVEALILASP  286 (677)
Q Consensus       266 L~~A~~~g~~~iv~~LL~~g~  286 (677)
                      ||+|+..|+.+++++|++++.
T Consensus       139 l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A          139 MDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHH
Confidence            999999999999999998763

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=2.5e-27  Score=227.34  Aligned_cols=167  Identities=26%  Similarity=0.305  Sum_probs=147.6

Q ss_pred             cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 005790          195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ  274 (677)
Q Consensus       195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~  274 (677)
                      +.++||.|+..|+.++|++|++.+....+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH   84 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            46899999999999999999999665448899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhC
Q 005790          275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITG  354 (677)
Q Consensus       275 ~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~  354 (677)
                      .+++++|++.|. +                                                ++.+|..|.||||+|+..
T Consensus        85 ~~~v~~Ll~~g~-~------------------------------------------------~~~~d~~g~t~L~~A~~~  115 (179)
T 3f6q_A           85 RDIVQKLLQYKA-D------------------------------------------------INAVNEHGNVPLHYACFW  115 (179)
T ss_dssp             HHHHHHHHHTTC-C------------------------------------------------TTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHcCC-C------------------------------------------------CCccCCCCCCHHHHHHHc
Confidence            999999999873 2                                                556678889999999998


Q ss_pred             CCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccC
Q 005790          355 NVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSA  416 (677)
Q Consensus       355 ~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G  416 (677)
                      + +.+++++|++ .|++++.+|..|.|||++|+..++.+    ++++|+++|++++..+..+
T Consensus       116 ~-~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~----~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          116 G-QDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLREL----LRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             T-CHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHH----HHHHHHHTTCCCSCBCCCC
T ss_pred             C-CHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHH----HHHHHHHhhcCcccCCccc
Confidence            8 9999999999 89999999999999999998877755    7899999999998876554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=9.5e-27  Score=220.42  Aligned_cols=158  Identities=23%  Similarity=0.274  Sum_probs=139.2

Q ss_pred             cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 005790          195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ  274 (677)
Q Consensus       195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~  274 (677)
                      |.||||.|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            468999999999999999999999887 7788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhC
Q 005790          275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITG  354 (677)
Q Consensus       275 ~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~  354 (677)
                      .+++++|++.+..                                                 ++.+|..|.||||+|+..
T Consensus        82 ~~~v~~Ll~~g~~-------------------------------------------------~~~~~~~g~t~L~~A~~~  112 (167)
T 3v31_A           82 TDIVKMLLDCGVD-------------------------------------------------VNEYDWNGGTPLLYAVHG  112 (167)
T ss_dssp             HHHHHHHHHHTCC-------------------------------------------------TTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHCCCC-------------------------------------------------CCcCCCCCCCHHHHHHHc
Confidence            9999999988732                                                 556678899999999998


Q ss_pred             CCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCC
Q 005790          355 NVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI  408 (677)
Q Consensus       355 ~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gad  408 (677)
                      + +.+++++|++ .|++++.+|..|.||||+|+..++.++    +++|++++++
T Consensus       113 ~-~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~----~~~L~~~~~~  160 (167)
T 3v31_A          113 N-HVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSV----QQVIESHLLK  160 (167)
T ss_dssp             T-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHH----HHHHHHHHHH
T ss_pred             C-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHH----HHHHHHHHHH
Confidence            8 9999999999 899999999999999999999999884    5555555543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1.4e-26  Score=219.99  Aligned_cols=158  Identities=27%  Similarity=0.275  Sum_probs=144.2

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      ..+.++|++||..|+.++|++|++.|+ +++..+..|.||||+|+ ..|+.+++++|+++|++++..+..          
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~----------   79 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGA-DVNAEDASGWTPLHLAA-FNGHLEIVEVLLKNGADVNAVDHA----------   79 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT----------
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCccCCC----------
Confidence            456789999999999999999999987 56778899999999985 779999999999999998866544          


Q ss_pred             chhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 005790          186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP  265 (677)
Q Consensus       186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp  265 (677)
                               |.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus        80 ---------g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  149 (169)
T 2y1l_E           80 ---------GMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA  149 (169)
T ss_dssp             ---------SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ---------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence                     478999999999999999999999998 7889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhC
Q 005790          266 LHIAAYRGQPAVVEALILAS  285 (677)
Q Consensus       266 L~~A~~~g~~~iv~~LL~~g  285 (677)
                      ||+|+..|+.+++++|++.|
T Consensus       150 l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          150 FDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=1.1e-26  Score=218.62  Aligned_cols=157  Identities=29%  Similarity=0.345  Sum_probs=143.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790          107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI  186 (677)
Q Consensus       107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~  186 (677)
                      ...||||+|+..|+.++|++|++.++ .++..+..|.||||+|+ . |+.+++++|+++|++++..+..           
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~-~-~~~~~v~~Ll~~g~~~~~~~~~-----------   69 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMK-L-GNPEIARRLLLRGANPDLKDRT-----------   69 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCC-CTTCCCTTSCCHHHHCC-S-SCHHHHHHHHHTTCCTTCCCTT-----------
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCC-CccccCccCccHHHHHH-c-CcHHHHHHHHHcCCCCCCCCCC-----------
Confidence            45799999999999999999999886 56778899999999974 6 9999999999999998876544           


Q ss_pred             hhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC-CCCCCCCCCcH
Q 005790          187 PSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI-INSTDHQGNTP  265 (677)
Q Consensus       187 ~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~-in~~d~~g~tp  265 (677)
                              |.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||
T Consensus        70 --------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~  140 (162)
T 1ihb_A           70 --------GFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA  140 (162)
T ss_dssp             --------SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred             --------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcH
Confidence                    478999999999999999999999998 78999999999999999999999999999998 69999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCC
Q 005790          266 LHIAAYRGQPAVVEALILASP  286 (677)
Q Consensus       266 L~~A~~~g~~~iv~~LL~~g~  286 (677)
                      ||+|+..|+.+++++|+++|+
T Consensus       141 l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          141 CDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHHcCCHHHHHHHHHhCC
Confidence            999999999999999999984

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=6.5e-27  Score=221.10  Aligned_cols=161  Identities=22%  Similarity=0.208  Sum_probs=146.5

Q ss_pred             hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790          104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI  183 (677)
Q Consensus       104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~  183 (677)
                      .+..|.|+||.|+..|+.++|++|++.++......+..|.||||+|| ..|+.+++++|+++|++++..+..        
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~--------   74 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA-GYNRVSVVEYLLQHGADVHAKDKG--------   74 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT--------
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHH-HcChHHHHHHHHhcCCCCCccCCC--------
Confidence            35678899999999999999999999888788888899999999985 779999999999999998876654        


Q ss_pred             hcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC
Q 005790          184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN  263 (677)
Q Consensus       184 ~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~  263 (677)
                                 |.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus        75 -----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  142 (165)
T 3twr_A           75 -----------GLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN  142 (165)
T ss_dssp             -----------SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             -----------CCCHHHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence                       378999999999999999999999999 78999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCC
Q 005790          264 TPLHIAAYRGQPAVVEALILASP  286 (677)
Q Consensus       264 tpL~~A~~~g~~~iv~~LL~~g~  286 (677)
                      ||||+|+. ++.+++++|++.|+
T Consensus       143 t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          143 TPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CTGGGSCT-TCHHHHHHHHTC--
T ss_pred             ChhHhHhc-CChHHHHHHhhccc
Confidence            99999877 99999999998873

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=1.3e-26  Score=222.43  Aligned_cols=168  Identities=18%  Similarity=0.190  Sum_probs=152.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790          107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI  186 (677)
Q Consensus       107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~  186 (677)
                      .+.++||.||..|+.++|++|++.++.+++..+..|.||||+|| ..|+.+++++|+++|++++..+..           
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~-----------   71 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWAC-REGRSAVVEMLIMRGARINVMNRG-----------   71 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT-----------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHH-HcCcHHHHHHHHHcCCCCCCcCCC-----------
Confidence            46789999999999999999999988888899999999999985 779999999999999999876554           


Q ss_pred             hhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 005790          187 PSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPL  266 (677)
Q Consensus       187 ~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL  266 (677)
                              |.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus        72 --------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl  142 (179)
T 3f6q_A           72 --------DDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV  142 (179)
T ss_dssp             --------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGG
T ss_pred             --------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcH
Confidence                    478999999999999999999999999 88999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCccccCCCC
Q 005790          267 HIAAYRGQPAVVEALILASPSMISVKNTSG  296 (677)
Q Consensus       267 ~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g  296 (677)
                      ++|+..++.+++++|++.| ++++..+..+
T Consensus       143 ~~A~~~~~~~~~~~L~~~g-~~~~~~~~~~  171 (179)
T 3f6q_A          143 DKAKAPLRELLRERAEKMG-QNLNRIPYKD  171 (179)
T ss_dssp             GGSCHHHHHHHHHHHHHTT-CCCSCBCCCC
T ss_pred             HHHHHHHHHHHHHHHHHhh-cCcccCCccc
Confidence            9999999999999999999 5566554443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.1e-26  Score=219.48  Aligned_cols=159  Identities=27%  Similarity=0.324  Sum_probs=137.8

Q ss_pred             hccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 005790          193 EMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYR  272 (677)
Q Consensus       193 ~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~  272 (677)
                      ..+.|+||.|+..|+.++++.|++.+....+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence            44679999999999999999999976654477888999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHH
Q 005790          273 GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI  352 (677)
Q Consensus       273 g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~  352 (677)
                      |+.+++++|++.|. +                                                ++.+|..|.||||+|+
T Consensus        86 ~~~~~v~~Ll~~g~-~------------------------------------------------~~~~~~~g~t~L~~A~  116 (165)
T 3twr_A           86 GHYEVAELLVKHGA-V------------------------------------------------VNVADLWKFTPLHEAA  116 (165)
T ss_dssp             TCHHHHHHHHHTTC-C------------------------------------------------TTCCCTTCCCHHHHHH
T ss_pred             CcHHHHHHHHhCCC-C------------------------------------------------CCCcCCCCCCHHHHHH
Confidence            99999999999873 2                                                4556778888888888


Q ss_pred             hCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCC
Q 005790          353 TGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGG  407 (677)
Q Consensus       353 ~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Ga  407 (677)
                      ..+ +.+++++|++ .|++++.+|..|.||||+|+. ++.+    ++++|+++||
T Consensus       117 ~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~----i~~~L~~~gA  164 (165)
T 3twr_A          117 AKG-KYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTD----IQDLLRGDAA  164 (165)
T ss_dssp             HTT-CHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHH----HHHHHHTC--
T ss_pred             HcC-CHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChH----HHHHHhhccc
Confidence            887 8999999998 899999999999999998776 6655    6888888876

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=9.5e-29  Score=247.67  Aligned_cols=201  Identities=17%  Similarity=0.104  Sum_probs=139.8

Q ss_pred             HHHHHHcCCCcc--ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHH
Q 005790          124 VKQLLDKNPLLV--FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHA  201 (677)
Q Consensus       124 vk~LL~~g~~~~--~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~  201 (677)
                      |+.||++++...  +..+..+.||||+|| ..|+.+++++|+++|++++..+..                   |.||||+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~d~~-------------------g~tpLh~   60 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAA-LTGELEVVQQAVKEMNDPSQPNEE-------------------GITALHN   60 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHH-HHTCHHHHHHHHHHSSCTTCCCTT-------------------SCCHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHH-HcCCHHHHHHHHhcCCCCCCCCCC-------------------CCCHHHH
Confidence            355666665332  334455666777774 557777888777777777655443                   3678888


Q ss_pred             HHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHH--HHcCCHHHH
Q 005790          202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD-HQGNTPLHIA--AYRGQPAVV  278 (677)
Q Consensus       202 A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d-~~g~tpL~~A--~~~g~~~iv  278 (677)
                      |+..|+.++|++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|  +..|+.+++
T Consensus        61 A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v  139 (229)
T 2vge_A           61 AICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCA  139 (229)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHH
Confidence            88888888888888888887 6777888888888888888888888888888888876 5788888888  888888888


Q ss_pred             HHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhh--hhccCCCCchHHHHHHhCCC
Q 005790          279 EALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI--INAKNNDGRTALHMAITGNV  356 (677)
Q Consensus       279 ~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~--in~~d~~G~TpLh~A~~~~~  356 (677)
                      ++|++.| ++++..+..|.|+++.++.....             ++|+     ..+++  ++.+|..|.||||+|+..| 
T Consensus       140 ~~Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~-------------~~ll-----~~ga~~~~~~~d~~G~TpL~~A~~~g-  199 (229)
T 2vge_A          140 TYLADVE-QSMGLMNSGAVYALWDYSAEFGD-------------ELSF-----REGESVTVLRRDGPEETDWWWAALHG-  199 (229)
T ss_dssp             HHHHHHH-HHTTTSGGGEEEESSCBCCSSTT-------------BCCB-----CTTCEEEEEESSCTTCSSEEEEEETT-
T ss_pred             HHHHHcC-CCcccccCCchHHHHHHhhcccc-------------ccCc-----cccccccccccCCCcccHHHHHHHcC-
Confidence            8888887 56777788888888865543211             2222     22344  6778888899999988877 


Q ss_pred             cHHHHHHHh
Q 005790          357 HLELVQLLM  365 (677)
Q Consensus       357 ~~eiv~lLL  365 (677)
                      +.++|+.++
T Consensus       200 ~~~~v~~~~  208 (229)
T 2vge_A          200 QEGYVPRNY  208 (229)
T ss_dssp             EEEEEEGGG
T ss_pred             Ccceeehhh
Confidence            888886543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=4.9e-26  Score=212.45  Aligned_cols=151  Identities=25%  Similarity=0.241  Sum_probs=138.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP  187 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~  187 (677)
                      ..|+|+.|+..|+.++|++|++.++...  .+..|.||||+|+ ..|+.+++++|+++|++++..+..            
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~------------   66 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAA-QYGHFSTTEVLLRAGVSRDARTKV------------   66 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHH-HHTCHHHHHHHHTTTCCTTCCCTT------------
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCC------------
Confidence            4589999999999999999999997443  5788999999986 669999999999999998866544            


Q ss_pred             hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790          188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH  267 (677)
Q Consensus       188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~  267 (677)
                             |.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||
T Consensus        67 -------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  138 (153)
T 1awc_B           67 -------DRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD  138 (153)
T ss_dssp             -------CCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             -------CCCHHHHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence                   478999999999999999999999998 788999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHH
Q 005790          268 IAAYRGQPAVVEAL  281 (677)
Q Consensus       268 ~A~~~g~~~iv~~L  281 (677)
                      +|+..|+.+++++|
T Consensus       139 ~A~~~~~~~i~~~L  152 (153)
T 1awc_B          139 ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999987

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=4.6e-26  Score=212.65  Aligned_cols=146  Identities=29%  Similarity=0.338  Sum_probs=133.9

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP  275 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~  275 (677)
                      .++||.|+..|+.+++++|++.|+++ + .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            58999999999999999999999987 3 588999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCC
Q 005790          276 AVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGN  355 (677)
Q Consensus       276 ~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~  355 (677)
                      +++++|++.|. +                                                ++.+|..|.||||+|+..+
T Consensus        81 ~~v~~Ll~~g~-~------------------------------------------------~~~~~~~g~t~L~~A~~~~  111 (153)
T 1awc_B           81 NIVEVLLKHGA-D------------------------------------------------VNAKDMLKMTALHWATEHN  111 (153)
T ss_dssp             HHHHHHHTTTC-C------------------------------------------------TTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCC-C------------------------------------------------CCCCCCCCCCHHHHHHHcC
Confidence            99999998873 2                                                4556788899999999988


Q ss_pred             CcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCch
Q 005790          356 VHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSAS  394 (677)
Q Consensus       356 ~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~  394 (677)
                       +.+++++|++ .|++++.+|..|.||||+|+..++.++
T Consensus       112 -~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i  148 (153)
T 1awc_B          112 -HQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             -CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             -CHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHH
Confidence             9999999999 899999999999999999999999874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=5.8e-26  Score=212.30  Aligned_cols=154  Identities=29%  Similarity=0.330  Sum_probs=143.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP  187 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~  187 (677)
                      +.||||+|+..|+.++|++|++....+++..+..|.||||+ | ..|+.+++++|+++|++++..+..            
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~-~~~~~~~v~~Ll~~g~~~~~~~~~------------   67 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-M-MFGSTAIALELLKQGASPNVQDTS------------   67 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-S-CTTCHHHHHHHHHTTCCTTCCCTT------------
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-H-HcCCHHHHHHHHHCCCCCCCcCCC------------
Confidence            56899999999999999999999655788889999999999 5 679999999999999999876554            


Q ss_pred             hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790          188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH  267 (677)
Q Consensus       188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~  267 (677)
                             |.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ ++++..|..|.||||
T Consensus        68 -------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~  138 (156)
T 1bd8_A           68 -------GTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLE  138 (156)
T ss_dssp             -------SCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHH
T ss_pred             -------CCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHH
Confidence                   479999999999999999999999998 78999999999999999999999999999 999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHh
Q 005790          268 IAAYRGQPAVVEALILA  284 (677)
Q Consensus       268 ~A~~~g~~~iv~~LL~~  284 (677)
                      +|+..|+.+++++|+++
T Consensus       139 ~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          139 LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHSCCHHHHHHHHTT
T ss_pred             HHHHcCcHHHHHHHHhh
Confidence            99999999999999864

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=1.7e-26  Score=232.59  Aligned_cols=169  Identities=20%  Similarity=0.234  Sum_probs=123.1

Q ss_pred             ccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 005790          194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG  273 (677)
Q Consensus       194 ~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g  273 (677)
                      .|.||||.|+..++.++++.||++|+++ +. +..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            3689999999999999999999999998 43 477899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790          274 QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT  353 (677)
Q Consensus       274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~  353 (677)
                      +.+++++|+++|. +                                                +|.+|..|.||||+|+.
T Consensus        82 ~~~~v~~Ll~~ga-~------------------------------------------------~~~~d~~g~tpL~~A~~  112 (239)
T 1ycs_B           82 HTEIVKFLVQFGV-N------------------------------------------------VNAADSDGWTPLHCAAS  112 (239)
T ss_dssp             CHHHHHHHHHHTC-C------------------------------------------------TTCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHcCC-C------------------------------------------------CCccCCCCCCHHHHHHH
Confidence            9999999999883 2                                                56678889999999999


Q ss_pred             CCCcHHHHHHHhhCCCCCccccCCCCC-cHHHHH--hhCCCCchHHHHHHHHHHcCCCCCCCcccCCch
Q 005790          354 GNVHLELVQLLMSAPSINVNVRDNDGM-TTLDLL--KQRPQSASSDILIRHLISAGGIFGCQDYSARRA  419 (677)
Q Consensus       354 ~~~~~eiv~lLL~~~Gadin~~d~~G~-TpL~~A--~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~  419 (677)
                      .+ +.++|++|++ .|++++.++..|. ||||+|  +..|+.+    ++++|+++|++++..+..+.++
T Consensus       113 ~~-~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~----~~~~Ll~~~a~~~~~~~~~~~a  175 (239)
T 1ycs_B          113 CN-NVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQ----CSQFLYGVQEKMGIMNKGVIYA  175 (239)
T ss_dssp             TT-CHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCC----HHHHHHHHHHHTTTTGGGEEEE
T ss_pred             cC-CHHHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHH----HHHHHHHhhhcccccccceEEE
Confidence            88 9999999999 9999999998887 999999  7888888    6899999999999886655554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.1e-25  Score=208.54  Aligned_cols=146  Identities=23%  Similarity=0.346  Sum_probs=122.4

Q ss_pred             cchHHHHHHhcCCHHHHHHHHhcC-CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 005790          195 MNRAVHAAARGGNLKILKELLENC-TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG  273 (677)
Q Consensus       195 ~~t~Lh~A~~~g~~eivk~LL~~g-a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g  273 (677)
                      +.|+||.|+..|+.+++++|++.. .++ +..+..|.||||+ +..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCc-cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            358999999999999999999993 255 7789999999999 9999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790          274 QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT  353 (677)
Q Consensus       274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~  353 (677)
                      +.+++++|++.| .+                                                ++.+|..|.||||+|+.
T Consensus        80 ~~~~v~~Ll~~g-~~------------------------------------------------~~~~~~~g~t~L~~A~~  110 (156)
T 1bd8_A           80 FLDTLKVLVEHG-AD------------------------------------------------VNVPDGTGALPIHLAVQ  110 (156)
T ss_dssp             CHHHHHHHHHTT-CC------------------------------------------------SCCCCTTSCCHHHHHHH
T ss_pred             cHHHHHHHHHcC-CC------------------------------------------------CCCcCCCCCcHHHHHHH
Confidence            999999999988 43                                                34445667777777777


Q ss_pred             CCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCch
Q 005790          354 GNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSAS  394 (677)
Q Consensus       354 ~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~  394 (677)
                      .+ +.+++++|++ . ++++.+|..|.||||+|+..++.++
T Consensus       111 ~~-~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~~~  148 (156)
T 1bd8_A          111 EG-HTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDL  148 (156)
T ss_dssp             HT-CHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHH
T ss_pred             hC-hHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcHHH
Confidence            66 7777777777 5 7777777777777777777777663

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=6.4e-26  Score=228.40  Aligned_cols=179  Identities=16%  Similarity=0.056  Sum_probs=129.3

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      ..|.||||.|+..|+.++++.|+++|+...  .+..|.||||+|| ..|+.+++++|+++|++++..+..          
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~d~~----------   69 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSS-LEGEFDLVQRIIYEVDDPSLPNDE----------   69 (239)
T ss_dssp             ------------------------------------CHHHHHHHH-HHTCHHHHHHHTSTTSSCCCCCTT----------
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHH-HcCCHHHHHHHHHcCCCCCCcCCC----------
Confidence            358999999999999999999999997554  2467899999985 679999999999999998877654          


Q ss_pred             chhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC-c
Q 005790          186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN-T  264 (677)
Q Consensus       186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~-t  264 (677)
                               |.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++++..+..|. |
T Consensus        70 ---------g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t  139 (239)
T 1ycs_B           70 ---------GITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT  139 (239)
T ss_dssp             ---------SCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred             ---------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcc
Confidence                     379999999999999999999999999 88999999999999999999999999999999999998877 9


Q ss_pred             HHHHH--HHcCCHHHHHHHHHhCCCCcccc---------CCCCCchhhhhhhcCc
Q 005790          265 PLHIA--AYRGQPAVVEALILASPSMISVK---------NTSGETFLHSAVSGFQ  308 (677)
Q Consensus       265 pL~~A--~~~g~~~iv~~LL~~g~~~~~~~---------~~~g~tpLh~A~~~~~  308 (677)
                      |||+|  +..|+.+++++|++.+ ++++..         +..+.+++++++..|.
T Consensus       140 ~l~~a~~~~~g~~~~~~~Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          140 AADKCEEMEEGYTQCSQFLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHCCSSSTTCCCHHHHHHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hHHHHHHhhhccHHHHHHHHHhh-hcccccccceEEEEeccCCCCCCcccccCCC
Confidence            99999  8889999999999987 444443         6678889988887553

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=3.4e-24  Score=195.96  Aligned_cols=133  Identities=24%  Similarity=0.305  Sum_probs=112.0

Q ss_pred             CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCc
Q 005790          219 TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGET  298 (677)
Q Consensus       219 a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~t  298 (677)
                      +++ +..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+. |+.+++++|++++. +          
T Consensus         3 ~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~-~----------   69 (136)
T 1d9s_A            3 PGI-HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGA-E----------   69 (136)
T ss_dssp             CCC-SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC-C----------
T ss_pred             CCc-cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC-C----------
Confidence            455 6678888888888888888888888888888888888888888888888 88888888888773 2          


Q ss_pred             hhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCC-CchHHHHHHhCCCcHHHHHHHhhCCCCCccccCC
Q 005790          299 FLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNND-GRTALHMAITGNVHLELVQLLMSAPSINVNVRDN  377 (677)
Q Consensus       299 pLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~-G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~  377 (677)
                                                            ++.+|.. |.||||+|+..+ +.+++++|++ .|++++.+|.
T Consensus        70 --------------------------------------~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~d~  109 (136)
T 1d9s_A           70 --------------------------------------PNCADPATLTRPVHDAAREG-FLDTLVVLHR-AGARLDVCDA  109 (136)
T ss_dssp             --------------------------------------SSCCBTTTTBCHHHHHHHHT-CHHHHHHHHH-TCCCCCCCSS
T ss_pred             --------------------------------------CCCcCCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCccCC
Confidence                                                  4556777 889999999888 9999999999 8999999999


Q ss_pred             CCCcHHHHHhhCCCCchHHHHHHHHHHcCCC
Q 005790          378 DGMTTLDLLKQRPQSASSDILIRHLISAGGI  408 (677)
Q Consensus       378 ~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gad  408 (677)
                      .|+||||+|+..++.+    ++++|+++|||
T Consensus       110 ~g~tpl~~A~~~~~~~----~~~~Ll~~Gad  136 (136)
T 1d9s_A          110 WGRLPVDLAEEQGHRD----IARYLHAATGD  136 (136)
T ss_dssp             SSSCHHHHHHHHTCHH----HHHHHHHHHCC
T ss_pred             CCCCHHHHHHHcCCHH----HHHHHHHcCCC
Confidence            9999999999999876    68888888876

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=3.7e-24  Score=200.58  Aligned_cols=139  Identities=18%  Similarity=0.177  Sum_probs=87.2

Q ss_pred             ccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCc-HHHHHHHc
Q 005790          194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNT-PLHIAAYR  272 (677)
Q Consensus       194 ~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~t-pL~~A~~~  272 (677)
                      .+.||||+|+..|+.++|++|+++|+++ +..+..|+||||+|+ .|+.+++++|+++|++++..|..|.| |||+|+..
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~   88 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   88 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHC
Confidence            3467777777777777777777777776 566677777777764 67777777777777777777777776 77777777


Q ss_pred             CCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHH
Q 005790          273 GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI  352 (677)
Q Consensus       273 g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~  352 (677)
                      |+.+++++|+++|. +                                                ++.+|..|.||||+|+
T Consensus        89 ~~~~~v~~Ll~~ga-~------------------------------------------------~~~~d~~g~tpl~~A~  119 (156)
T 1bi7_B           89 GFLDTLVVLHRAGA-R------------------------------------------------LDVRDAWGRLPVDLAE  119 (156)
T ss_dssp             TCHHHHHHHHHHTC-C------------------------------------------------SSCCCTTCCCHHHHHH
T ss_pred             CCHHHHHHHHHcCC-C------------------------------------------------CcccCCCCCCHHHHHH
Confidence            77777777777662 2                                                4445666777777777


Q ss_pred             hCCCcHHHHHHHhhCCCCCccccCCCCCcHHHH
Q 005790          353 TGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL  385 (677)
Q Consensus       353 ~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~  385 (677)
                      ..+ +.+++++|++ .|++++.+|..|.||.+-
T Consensus       120 ~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B          120 ELG-HRDVARYLRA-AAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             HHT-CHHHHHHHSS-CC----------------
T ss_pred             HhC-HHHHHHHHHH-cCCCCCccCcCcCccccc
Confidence            766 7777777777 777777777777777663

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=1.7e-24  Score=202.92  Aligned_cols=144  Identities=24%  Similarity=0.272  Sum_probs=107.9

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhh
Q 005790          224 YRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA  303 (677)
Q Consensus       224 ~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A  303 (677)
                      ..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+ .|+.+++++|++.|. +               
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~-~---------------   69 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA-E---------------   69 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC-C---------------
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCC-C---------------
Confidence            35667788888888888888888888888888888888888888875 788888888887762 2               


Q ss_pred             hhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCch-HHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcH
Q 005790          304 VSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRT-ALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTT  382 (677)
Q Consensus       304 ~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~T-pLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~Tp  382 (677)
                                                       ++.+|..|.| |||+|+..+ +.++|++|++ .|++++.+|..|+||
T Consensus        70 ---------------------------------~~~~d~~g~ttpL~~A~~~~-~~~~v~~Ll~-~ga~~~~~d~~g~tp  114 (156)
T 1bi7_B           70 ---------------------------------PNCADPATLTRPVHDAAREG-FLDTLVVLHR-AGARLDVRDAWGRLP  114 (156)
T ss_dssp             ---------------------------------CCCCCTTTCCCHHHHHHHHT-CHHHHHHHHH-HTCCSSCCCTTCCCH
T ss_pred             ---------------------------------CCCcCCCCCcHHHHHHHHCC-CHHHHHHHHH-cCCCCcccCCCCCCH
Confidence                                             5666788898 999999988 9999999999 899999999999999


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHH
Q 005790          383 LDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASH  423 (677)
Q Consensus       383 L~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~a  423 (677)
                      ||+|+..++.+    ++++|+++|++++.++..|.||...+
T Consensus       115 l~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          115 VDLAEELGHRD----VARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHH----HHHHHSSCC-----------------
T ss_pred             HHHHHHhCHHH----HHHHHHHcCCCCCccCcCcCcccccC
Confidence            99999999987    79999999999999999999997643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=4.2e-24  Score=206.69  Aligned_cols=159  Identities=18%  Similarity=0.193  Sum_probs=120.8

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCH----HHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQV----EVVKDLIASFDIINSTDHQGNTPLHIAAY  271 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~----eivk~Ll~~ga~in~~d~~g~tpL~~A~~  271 (677)
                      .++|+.|++.|+.+.++.++..+.+.  ..+..|+||||+|+.+|+.    +++++|+++|+++|.+|..|+||||+|+.
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            47899999999999999999987543  2237899999999999975    59999999999999999999999999999


Q ss_pred             cCC------HHHHHHHHHhCCCCccccCCCCC-chhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCC
Q 005790          272 RGQ------PAVVEALILASPSMISVKNTSGE-TFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDG  344 (677)
Q Consensus       272 ~g~------~~iv~~LL~~g~~~~~~~~~~g~-tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G  344 (677)
                      .++      .+++++|+++| ++++.+|..|. ||||+|+..+...     .                            
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~~-----~----------------------------  130 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVDE-----N----------------------------  130 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSCH-----H----------------------------
T ss_pred             cCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCCh-----h----------------------------
Confidence            987      57899999988 67888888787 7888777632110     1                            


Q ss_pred             chHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHH
Q 005790          345 RTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH  401 (677)
Q Consensus       345 ~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~  401 (677)
                                + +.+++++|++..|+|+|.+|..|.||||+|+..++.++++.|.++
T Consensus       131 ----------~-~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          131 ----------E-MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             ----------H-HHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             ----------h-HHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence                      1 345666666545666666666666666666666666543333333

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=1.6e-23  Score=191.44  Aligned_cols=133  Identities=23%  Similarity=0.233  Sum_probs=68.9

Q ss_pred             CCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCc
Q 005790           99 KNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGE  178 (677)
Q Consensus        99 ~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~  178 (677)
                      .+++..+..|.||||+|+..|+.++|++|+++++ +++..+..|.||||+|+ . |+.+++++|+++|++++..+...  
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~-~~~~~v~~Ll~~g~~~~~~~~~~--   77 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA-DPNALNRFGRRPIQVMM-M-GSAQVAELLLLHGAEPNCADPAT--   77 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCTTTTTST-T-SCHHHHHHHHHHTCCSSCCBTTT--
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCC-CcCCcCCCCCCHHHHHH-c-CCHHHHHHHHHCCCCCCCcCCCC--
Confidence            4455555556666666666666666666665554 34444555555555553 3 55555555555555554433220  


Q ss_pred             chhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCC
Q 005790          179 LEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD  253 (677)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga  253 (677)
                                      |.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++|+++|+
T Consensus        78 ----------------g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           78 ----------------LTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             ----------------TBCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             ----------------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence                            134555555555555555555555544 4444455555555555555555555555444

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=1e-23  Score=203.87  Aligned_cols=155  Identities=16%  Similarity=0.088  Sum_probs=134.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCH----HHHHHHHhcCCCcccccccCCcchhhh
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNC----DVFRLIYDFAVSPRFLTAKGGELEEHI  183 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~----evv~lLl~~Gad~~~~~~~~~~~~~~~  183 (677)
                      +.++|+.|+..|+.+.++.++..+....  .+..|+||||+|+ ..|+.    +++++|+++|++++..+..|       
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~-~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g-------   75 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVL-RNNNDEARYKISMFLINKGADIKSRTKEG-------   75 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCH--HHHHTTTHHHHHT-TCSCHHHHHHHHHHHHHTTCCSSCCCTTC-------
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcccc--cccCCCCHHHHHH-HcCCcchHHHHHHHHHHCCCCCCCCCCCC-------
Confidence            4578999999999999999998875332  2367999999985 66764    59999999999999876553       


Q ss_pred             hcchhhhhhhccchHHHHHHhcCC------HHHHHHHHhcCCCccccCCCCCC-cHHHHHHHhC-----CHHHHHHHHh-
Q 005790          184 EEIPSVYKWEMMNRAVHAAARGGN------LKILKELLENCTDVLTYRDKQGS-TILHAAAGRG-----QVEVVKDLIA-  250 (677)
Q Consensus       184 ~~~~~~~~~~~~~t~Lh~A~~~g~------~eivk~LL~~ga~~~~~~d~~g~-TpL~~A~~~g-----~~eivk~Ll~-  250 (677)
                                  +||||+|+..|+      .+++++||++|+++ +.+|..|. ||||+|+..+     +.+++++|++ 
T Consensus        76 ------------~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~  142 (186)
T 3t8k_A           76 ------------TTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ  142 (186)
T ss_dssp             ------------CCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS
T ss_pred             ------------CcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh
Confidence                        789999999887      68999999999999 88999999 9999999844     4679999999 


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 005790          251 SFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS  285 (677)
Q Consensus       251 ~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g  285 (677)
                      +|++++.+|..|.||||+|+..|+.++|++|++..
T Consensus       143 ~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          143 SGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999999999999998764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=3.4e-22  Score=178.82  Aligned_cols=126  Identities=40%  Similarity=0.620  Sum_probs=86.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcC
Q 005790          228 QGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF  307 (677)
Q Consensus       228 ~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~  307 (677)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+. +                   
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~-------------------   60 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-D-------------------   60 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-C-------------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC-C-------------------
Confidence            36677777777777777777777777777777777777777777777777777776652 1                   


Q ss_pred             chHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHh
Q 005790          308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLK  387 (677)
Q Consensus       308 ~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~  387 (677)
                                                   ++.+|..|.||||+|+..+ +.+++++|++ .|++++.+|..|.|||++|+
T Consensus        61 -----------------------------~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~  109 (126)
T 1n0r_A           61 -----------------------------VNAKDKNGRTPLHLAARNG-HLEVVKLLLE-AGADVNAKDKNGRTPLHLAA  109 (126)
T ss_dssp             -----------------------------TTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHH
T ss_pred             -----------------------------CcccCCCCCcHHHHHHHcC-hHHHHHHHHH-cCCCCcccCCCCCCHHHHHH
Confidence                                         3344556666777776666 6777777777 67777777777777777777


Q ss_pred             hCCCCchHHHHHHHHHHcCCC
Q 005790          388 QRPQSASSDILIRHLISAGGI  408 (677)
Q Consensus       388 ~~~~~~~~~~lv~~Ll~~Gad  408 (677)
                      ..++.+    ++++|+++|||
T Consensus       110 ~~~~~~----~~~~Ll~~Gad  126 (126)
T 1n0r_A          110 RNGHLE----VVKLLLEAGAY  126 (126)
T ss_dssp             HTTCHH----HHHHHHHHTCC
T ss_pred             HcCcHH----HHHHHHHcCCC
Confidence            777655    56666666664

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=5e-22  Score=181.42  Aligned_cols=124  Identities=30%  Similarity=0.441  Sum_probs=107.5

Q ss_pred             hhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 005790          192 WEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAY  271 (677)
Q Consensus       192 ~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~  271 (677)
                      ...+.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            344679999999999999999999999998 7889999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHH
Q 005790          272 RGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMA  351 (677)
Q Consensus       272 ~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A  351 (677)
                      .|+.+++++|+++| ++                                                ++.+|..|.||||+|
T Consensus        90 ~~~~~~v~~Ll~~g-~~------------------------------------------------~~~~~~~g~tpl~~A  120 (136)
T 2jab_A           90 IGHLEIAEVLLKHG-AD------------------------------------------------VNAQDKFGKTAFDIS  120 (136)
T ss_dssp             HTCHHHHHHHHHTT-CC------------------------------------------------TTCCCTTSCCHHHHH
T ss_pred             cCCHHHHHHHHHcC-CC------------------------------------------------CcCcCCCCCCHHHHH
Confidence            99999999999988 33                                                344456667777777


Q ss_pred             HhCCCcHHHHHHHhh
Q 005790          352 ITGNVHLELVQLLMS  366 (677)
Q Consensus       352 ~~~~~~~eiv~lLL~  366 (677)
                      +..+ +.+++++|++
T Consensus       121 ~~~~-~~~~~~~Ll~  134 (136)
T 2jab_A          121 IGNG-NEDLAEILQK  134 (136)
T ss_dssp             HHTT-CHHHHHHHHH
T ss_pred             HHCC-CHHHHHHHHH
Confidence            7766 7777777776

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=9.6e-22  Score=175.82  Aligned_cols=125  Identities=44%  Similarity=0.631  Sum_probs=113.8

Q ss_pred             cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 005790          195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ  274 (677)
Q Consensus       195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~  274 (677)
                      |+||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++|+++|++++..|..|.||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            679999999999999999999999998 7789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhC
Q 005790          275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITG  354 (677)
Q Consensus       275 ~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~  354 (677)
                      .+++++|++.|. +                                                ++.+|..|.||||+|+..
T Consensus        81 ~~~~~~Ll~~g~-~------------------------------------------------~~~~~~~g~t~l~~A~~~  111 (126)
T 1n0r_A           81 LEVVKLLLEAGA-D------------------------------------------------VNAKDKNGRTPLHLAARN  111 (126)
T ss_dssp             HHHHHHHHHTTC-C------------------------------------------------TTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHcCC-C------------------------------------------------CcccCCCCCCHHHHHHHc
Confidence            999999999873 2                                                445567788888888887


Q ss_pred             CCcHHHHHHHhhCCCCC
Q 005790          355 NVHLELVQLLMSAPSIN  371 (677)
Q Consensus       355 ~~~~eiv~lLL~~~Gad  371 (677)
                      + +.+++++|++ +|+|
T Consensus       112 ~-~~~~~~~Ll~-~Gad  126 (126)
T 1n0r_A          112 G-HLEVVKLLLE-AGAY  126 (126)
T ss_dssp             T-CHHHHHHHHH-HTCC
T ss_pred             C-cHHHHHHHHH-cCCC
Confidence            7 8888888888 7875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=6.6e-22  Score=180.65  Aligned_cols=126  Identities=26%  Similarity=0.251  Sum_probs=93.2

Q ss_pred             CCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcC
Q 005790          139 GEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENC  218 (677)
Q Consensus       139 ~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~g  218 (677)
                      ...+.||||+|| ..|+.+++++|+++|++++..+..                   |.||||+|+..|+.+++++|+++|
T Consensus        11 ~~~~~t~l~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~-------------------g~t~L~~A~~~~~~~~v~~Ll~~g   70 (136)
T 2jab_A           11 GSDLGKKLLEAA-RAGQDDEVRILMANGADVNAKDEY-------------------GLTPLYLATAHGHLEIVEVLLKNG   70 (136)
T ss_dssp             -CHHHHHHHHHH-HHTCHHHHHHHHHTTCCTTCCCTT-------------------SCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cccccHHHHHHH-HhCCHHHHHHHHHcCCCCCCcCCC-------------------CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344567777764 557777777777777766654433                   357777777777777788888777


Q ss_pred             CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 005790          219 TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS  285 (677)
Q Consensus       219 a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g  285 (677)
                      +++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.|
T Consensus        71 ~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           71 ADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            777 667778888888888888888888888888888888888888888888888888888887654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=1.3e-21  Score=197.60  Aligned_cols=143  Identities=27%  Similarity=0.262  Sum_probs=130.3

Q ss_pred             hhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHH
Q 005790          192 WEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD-HQGNTPLHIAA  270 (677)
Q Consensus       192 ~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d-~~g~tpL~~A~  270 (677)
                      ...|.||||+|+..|+.++|++|++ |+++ +..|..|+||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            3457899999999999999999999 9988 7899999999999999999999999999999999998 88999999999


Q ss_pred             HcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHH
Q 005790          271 YRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM  350 (677)
Q Consensus       271 ~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~  350 (677)
                      ..|+.+++++|+++| ++++.++..|.||||+|+..                                .....+.||||+
T Consensus       120 ~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~--------------------------------~~~~~~~~~l~~  166 (244)
T 3ui2_A          120 GYVRPEVVEALVELG-ADIEVEDERGLTALELAREI--------------------------------LKTTPKGNPMQF  166 (244)
T ss_dssp             HTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHH--------------------------------HTTCCCSSHHHH
T ss_pred             HcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHH--------------------------------HhccCCCCHHHH
Confidence            999999999999998 78999999999999999851                                123578999999


Q ss_pred             HHhCCCcHHHHHHHhhCCCCC
Q 005790          351 AITGNVHLELVQLLMSAPSIN  371 (677)
Q Consensus       351 A~~~~~~~eiv~lLL~~~Gad  371 (677)
                      |+..| +.+++++|++ .+.+
T Consensus       167 a~~~g-~~~iv~~L~~-~~~~  185 (244)
T 3ui2_A          167 GRRIG-LEKVINVLEG-QVFE  185 (244)
T ss_dssp             HHHHH-HHHHHHHHHH-HHEE
T ss_pred             HHHcC-hHHHHHHHHH-hccc
Confidence            99988 9999999998 5544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=2.1e-21  Score=186.87  Aligned_cols=140  Identities=28%  Similarity=0.269  Sum_probs=128.5

Q ss_pred             hhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHH
Q 005790          191 KWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD-HQGNTPLHIA  269 (677)
Q Consensus       191 ~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d-~~g~tpL~~A  269 (677)
                      .+..|.||||+|+..|+.+++++|++ |+++ +..|..|+||||+|+..|+.+++++|+++|++++..+ ..|+||||+|
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            34567899999999999999999999 9988 7899999999999999999999999999999999998 8899999999


Q ss_pred             HHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHH
Q 005790          270 AYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALH  349 (677)
Q Consensus       270 ~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh  349 (677)
                      +..|+.+++++|+++| ++++.+|..|.||||+|+..+                                ....+.++|+
T Consensus       118 ~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~--------------------------------~~~~~~~~l~  164 (183)
T 3deo_A          118 AGYVRPEVVEALVELG-ADIEVEDERGLTALELAREIL--------------------------------KTTPKGNPMQ  164 (183)
T ss_dssp             HHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHH--------------------------------HTCCCCSHHH
T ss_pred             HhcCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHHHhc--------------------------------cCcccccHHH
Confidence            9999999999999998 789999999999999999621                                1246789999


Q ss_pred             HHHhCCCcHHHHHHHhh
Q 005790          350 MAITGNVHLELVQLLMS  366 (677)
Q Consensus       350 ~A~~~~~~~eiv~lLL~  366 (677)
                      +|+..+ +.+++++|.+
T Consensus       165 ~a~~~~-~~~i~~~L~~  180 (183)
T 3deo_A          165 FGRRIG-LEKVINVLEG  180 (183)
T ss_dssp             HHHHHH-HHHHHHHHHT
T ss_pred             HHHHcC-HHHHHHHHHH
Confidence            999988 9999999987

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=2.9e-22  Score=183.05  Aligned_cols=132  Identities=27%  Similarity=0.389  Sum_probs=102.9

Q ss_pred             CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCC
Q 005790          218 CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGE  297 (677)
Q Consensus       218 ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~  297 (677)
                      |+|+  .+|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.+. +         
T Consensus         1 G~d~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~---------   68 (137)
T 3c5r_A            1 GIDP--FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA-L---------   68 (137)
T ss_dssp             ---C--CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-C---------
T ss_pred             CCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-c---------
Confidence            4454  578889999999999999999999999999999999999999999999999999999988773 2         


Q ss_pred             chhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCC
Q 005790          298 TFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN  377 (677)
Q Consensus       298 tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~  377 (677)
                                                             ++.+|..|.||||+|+..+ +.+++++|++ .|++++.+|.
T Consensus        69 ---------------------------------------~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~  107 (137)
T 3c5r_A           69 ---------------------------------------VNTTGYQNDSPLHDAAKNG-HVDIVKLLLS-YGASRNAVNI  107 (137)
T ss_dssp             ---------------------------------------TTCCCGGGCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCT
T ss_pred             ---------------------------------------ccCcCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCCCCC
Confidence                                                   4455667788888888877 8888888888 7888888888


Q ss_pred             CCCcHHHHHhhCCCCchHHHHHHHHHHcC
Q 005790          378 DGMTTLDLLKQRPQSASSDILIRHLISAG  406 (677)
Q Consensus       378 ~G~TpL~~A~~~~~~~~~~~lv~~Ll~~G  406 (677)
                      .|.||||+|+..+..+    ++++|.+.+
T Consensus       108 ~g~tpl~~A~~~~~~~----~l~~l~~~~  132 (137)
T 3c5r_A          108 FGLRPVDYTDDESMKS----LLLLPEKNE  132 (137)
T ss_dssp             TSCCGGGGCCCHHHHH----HHSCC----
T ss_pred             CCCCHHHHHhhccHHH----HHhhccccc
Confidence            8888888887665544    455554443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=2.6e-21  Score=176.71  Aligned_cols=124  Identities=25%  Similarity=0.302  Sum_probs=112.5

Q ss_pred             hhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 005790          192 WEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAY  271 (677)
Q Consensus       192 ~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~  271 (677)
                      +..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence            344689999999999999999999999998 7899999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHc
Q 005790          272 RGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLAS  327 (677)
Q Consensus       272 ~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~  327 (677)
                      .|+.+++++|++.| ++++.+|..|.||||+|+.          .+..+++.+|.+
T Consensus        86 ~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~----------~~~~~~l~~l~~  130 (137)
T 3c5r_A           86 NGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDD----------ESMKSLLLLPEK  130 (137)
T ss_dssp             TTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCC----------HHHHHHHSCC--
T ss_pred             cCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhh----------ccHHHHHhhccc
Confidence            99999999999998 7799999999999999998          455555555443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=8e-21  Score=197.94  Aligned_cols=109  Identities=24%  Similarity=0.280  Sum_probs=86.7

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCcccc-----CCCCCCcHHHHHHHh---CCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTY-----RDKQGSTILHAAAGR---GQVEVVKDLIASFDIINSTDHQGNTPLH  267 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~-----~d~~g~TpL~~A~~~---g~~eivk~Ll~~ga~in~~d~~g~tpL~  267 (677)
                      .++|+.|+..|+.+.|+.|++.|++++..     .+..|.||||+|+..   |+.+++++|+++|++++..|..|+||||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh  231 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH  231 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence            36799999999999999999999888332     588889999999987   8899999999999999999988999999


Q ss_pred             HHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790          268 IAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS  305 (677)
Q Consensus       268 ~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~  305 (677)
                      +|+..|+.+++++|++.| ++++.+|..|.||||+|+.
T Consensus       232 ~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~  268 (301)
T 2b0o_E          232 YAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARK  268 (301)
T ss_dssp             HHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHH
Confidence            999999999999999887 4455444444444444443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=1.4e-20  Score=168.52  Aligned_cols=110  Identities=28%  Similarity=0.351  Sum_probs=105.1

Q ss_pred             ccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 005790          194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG  273 (677)
Q Consensus       194 ~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g  273 (677)
                      .+.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            4579999999999999999999999998 789999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790          274 QPAVVEALILASPSMISVKNTSGETFLHSAVS  305 (677)
Q Consensus       274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~  305 (677)
                      +.+++++|+++| ++++.++..|.||||+|..
T Consensus        85 ~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           85 HVSCVKLLLSKG-ADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             CHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCC
T ss_pred             CHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCC
Confidence            999999999998 6799999999999999965

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=1.2e-20  Score=196.64  Aligned_cols=144  Identities=17%  Similarity=0.132  Sum_probs=97.8

Q ss_pred             CHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhc---CCHHHHHHHHhcCCC
Q 005790          144 TDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARG---GNLKILKELLENCTD  220 (677)
Q Consensus       144 tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~eivk~LL~~ga~  220 (677)
                      ++|+.| +..|+.+.++.|++.|++++........             +..|.||||+|+..   |+.+++++|+++|++
T Consensus       153 ~~L~~A-~~~g~~~~v~~ll~~g~d~~~~~~~~~~-------------~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad  218 (301)
T 2b0o_E          153 QRLWTA-ICNRDLLSVLEAFANGQDFGQPLPGPDA-------------QAPEELVLHLAVKVANQASLPLVDFIIQNGGH  218 (301)
T ss_dssp             HHHHHH-HHTTCHHHHHHHHHTTCCTTSCEECSSS-------------CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC
T ss_pred             HHHhhh-hhccCHHHHHHHHhcCCcccccCCCccc-------------CCCCccHHHHHHHhcccCcHHHHHHHHhcCCC
Confidence            445555 3556666666666666666542110000             00135777777776   778888888888888


Q ss_pred             ccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchh
Q 005790          221 VLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFL  300 (677)
Q Consensus       221 ~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpL  300 (677)
                      + +..|..|+||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|++.++.       .|.|||
T Consensus       219 v-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpL  290 (301)
T 2b0o_E          219 L-DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPL  290 (301)
T ss_dssp             T-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCC
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChh
Confidence            7 67788888888888888888888888888888888888888888888888888888888887732       578888


Q ss_pred             hhhhhcCch
Q 005790          301 HSAVSGFQT  309 (677)
Q Consensus       301 h~A~~~~~~  309 (677)
                      |+|+..|+.
T Consensus       291 h~A~~~g~~  299 (301)
T 2b0o_E          291 HVDYSWVIS  299 (301)
T ss_dssp             C--------
T ss_pred             HHHHhcCCc
Confidence            888876653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.84  E-value=1.7e-21  Score=193.35  Aligned_cols=134  Identities=23%  Similarity=0.311  Sum_probs=64.7

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790          226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS  305 (677)
Q Consensus       226 d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~  305 (677)
                      +..|.||||+|+..|+.++|++|++.|++++..|..|.||||+|+..|+.+++++|++.++++                 
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-----------------  132 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-----------------  132 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-----------------
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-----------------
Confidence            334555555555555555555555555555555555555555555555555555555541121                 


Q ss_pred             cCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHH
Q 005790          306 GFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL  385 (677)
Q Consensus       306 ~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~  385 (677)
                                                     ++.+|..|.||||+|+..+ +.++|++|++ .|++++.+|..|.||||+
T Consensus       133 -------------------------------~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~  179 (222)
T 3ehr_A          133 -------------------------------LNQQNKLGDTALHAAAWKG-YADIVQLLLA-KGARTDLRNIEKKLAFDM  179 (222)
T ss_dssp             -------------------------------CCCCCTTSCCHHHHHHHHT-CHHHHHHHHH-HTCCSCCCCTTSCCHHHH
T ss_pred             -------------------------------ccccCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCccccCCCCCHHHH
Confidence                                           3333444555555555544 5555555555 455555555555555555


Q ss_pred             HhhCCCCchHHHHHHHHHHcCCCCCCCc
Q 005790          386 LKQRPQSASSDILIRHLISAGGIFGCQD  413 (677)
Q Consensus       386 A~~~~~~~~~~~lv~~Ll~~Gadin~~d  413 (677)
                      |+..++.+    +++.|++.|++.+..+
T Consensus       180 A~~~~~~~----~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          180 ATNAACAS----LLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             CCSHHHHH----HHC-------------
T ss_pred             hcchhHHH----HHHHHhccchhhhccc
Confidence            55544433    4555555555544443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=5.8e-21  Score=189.49  Aligned_cols=114  Identities=30%  Similarity=0.402  Sum_probs=99.3

Q ss_pred             hhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhc-CCCCCCCCCCCCcHHHH
Q 005790          190 YKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS-FDIINSTDHQGNTPLHI  268 (677)
Q Consensus       190 ~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~-ga~in~~d~~g~tpL~~  268 (677)
                      ..+..|.||||+|+..|+.++|++|++.|+++ +..|..|+||||+|+..|+.++|++|+++ |++++..|..|.||||+
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA  146 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence            34556789999999999999999999999998 78899999999999999999999999998 99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790          269 AAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS  305 (677)
Q Consensus       269 A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~  305 (677)
                      |+..|+.+++++|++.| ++++.++..|.||||+|+.
T Consensus       147 A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~  182 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATN  182 (222)
T ss_dssp             HHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCS
T ss_pred             HHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcc
Confidence            99999999999999998 4455444444444444443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.82  E-value=1.6e-20  Score=189.64  Aligned_cols=142  Identities=22%  Similarity=0.191  Sum_probs=124.9

Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhh
Q 005790          105 AGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIE  184 (677)
Q Consensus       105 d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~  184 (677)
                      +..|.||||+||..|+.++|++|++ ++ +++..+..|.||||+|| ..|+.++|++|+++|++++..+...        
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~~~~~~~~~--------  110 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DR-DVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDHRDMRG--------  110 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TC-CTTCBCTTSCBHHHHHH-HHTCHHHHHHHHHTTCCTTCCCSSS--------
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CC-CCCCcCCCCCCHHHHHH-HCCCHHHHHHHHHcCCCCCcCCCCC--------
Confidence            4568899999999999999999999 65 67788999999999996 6699999999999999998776332        


Q ss_pred             cchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCc
Q 005790          185 EIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNT  264 (677)
Q Consensus       185 ~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~t  264 (677)
                                |.||||+|+..|+.++|++|+++|+++ +..|..|.||||+|+..++                 ...+.|
T Consensus       111 ----------g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~-----------------~~~~~~  162 (244)
T 3ui2_A          111 ----------GLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK-----------------TTPKGN  162 (244)
T ss_dssp             ----------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT-----------------TCCCSS
T ss_pred             ----------CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh-----------------ccCCCC
Confidence                      469999999999999999999999999 7899999999999986332                 245789


Q ss_pred             HHHHHHHcCCHHHHHHHHHhC
Q 005790          265 PLHIAAYRGQPAVVEALILAS  285 (677)
Q Consensus       265 pL~~A~~~g~~~iv~~LL~~g  285 (677)
                      |||+|+..|+.+++++|++.+
T Consensus       163 ~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          163 PMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHhc
Confidence            999999999999999999864

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.82  E-value=1.9e-20  Score=180.18  Aligned_cols=142  Identities=22%  Similarity=0.189  Sum_probs=123.3

Q ss_pred             hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790          104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI  183 (677)
Q Consensus       104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~  183 (677)
                      .+..|.||||+|+..|+.++|++|++ ++ +++..+..|.||||+|| ..|+.+++++|+++|++++..+...       
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~-~~~~~~~v~~Ll~~ga~~~~~~~~~-------  109 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DR-DVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDHRDMRG-------  109 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TS-CTTCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCCTTCCCSSS-------
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cC-CCCCcCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCcCCCCC-------
Confidence            35578999999999999999999999 54 67788999999999996 6699999999999999998766222       


Q ss_pred             hcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC
Q 005790          184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN  263 (677)
Q Consensus       184 ~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~  263 (677)
                                 |+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++.                 ..+.
T Consensus       110 -----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~-----------------~~~~  160 (183)
T 3deo_A          110 -----------GLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT-----------------TPKG  160 (183)
T ss_dssp             -----------SCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT-----------------CCCC
T ss_pred             -----------CCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC-----------------cccc
Confidence                       469999999999999999999999998 78999999999999975433                 3467


Q ss_pred             cHHHHHHHcCCHHHHHHHHHh
Q 005790          264 TPLHIAAYRGQPAVVEALILA  284 (677)
Q Consensus       264 tpL~~A~~~g~~~iv~~LL~~  284 (677)
                      +||++|+..|+.+++++|.++
T Consensus       161 ~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          161 NPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHcCHHHHHHHHHHh
Confidence            999999999999999999754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.81  E-value=3.7e-20  Score=165.79  Aligned_cols=110  Identities=22%  Similarity=0.177  Sum_probs=82.2

Q ss_pred             CCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCC
Q 005790          140 EYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCT  219 (677)
Q Consensus       140 ~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga  219 (677)
                      ..|.||||+|+ ..|+.+++++|+++|++++..+..                   |.||||+|+..|+.+++++|+++|+
T Consensus         5 ~~~~~~l~~A~-~~~~~~~v~~ll~~~~~~~~~~~~-------------------g~t~L~~A~~~~~~~~v~~Ll~~g~   64 (123)
T 3aaa_C            5 SMCDKEFMWAL-KNGDLDEVKDYVAKGEDVNRTLEG-------------------GRKPLHYAADCGQLEILEFLLLKGA   64 (123)
T ss_dssp             --CHHHHHHHH-HTTCHHHHHHHHHTTCCTTSCCTT-------------------SSCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             cccchHHHHHH-HcCCHHHHHHHHHcCCCcCccCCC-------------------CCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            45566777764 557777777777777766654433                   3577777777788888888888888


Q ss_pred             CccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 005790          220 DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAA  270 (677)
Q Consensus       220 ~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~  270 (677)
                      ++ +..|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|.
T Consensus        65 ~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           65 DI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             CT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             CC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            77 677888888888888888888888888888888888888888888884

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=1.2e-19  Score=193.83  Aligned_cols=161  Identities=19%  Similarity=0.241  Sum_probs=98.6

Q ss_pred             cchHHHHHHhc-CCHHHHHHHHhcCCCccccCC--CCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 005790          195 MNRAVHAAARG-GNLKILKELLENCTDVLTYRD--KQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAY  271 (677)
Q Consensus       195 ~~t~Lh~A~~~-g~~eivk~LL~~ga~~~~~~d--~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~  271 (677)
                      +.|+||.|+.. |+.++|++||++|+++ +..+  ..|.||||+|+..|+.++|++|+++|++++..|..|+||||+|+.
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            45788888888 8888888888888888 5566  788888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHH
Q 005790          272 RGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMA  351 (677)
Q Consensus       272 ~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A  351 (677)
                      .|+.+++++||++| ++                                                ++.+|..|.||||+|
T Consensus       278 ~g~~~~v~~LL~~G-ad------------------------------------------------~~~~d~~G~TpL~~A  308 (368)
T 3jue_A          278 LGHTGLACLFLKRG-AD------------------------------------------------LGARDSEGRDPLTIA  308 (368)
T ss_dssp             HTCHHHHHHHHHTT-CC------------------------------------------------TTCCCTTSCCHHHHH
T ss_pred             cCcHHHHHHHHHCc-CC------------------------------------------------CCCcCCCCCCHHHHH
Confidence            88888888888887 33                                                455566777777777


Q ss_pred             HhCCCcHHHHHHHhhCCC---CCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCC
Q 005790          352 ITGNVHLELVQLLMSAPS---INVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIF  409 (677)
Q Consensus       352 ~~~~~~~eiv~lLL~~~G---adin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadi  409 (677)
                      +..+ +.+++++|+. .+   ++....+..+.|+|+++........  .-.+.|...+.++
T Consensus       309 ~~~g-~~~iv~lLl~-~~~~~~~~~~~~~~~~t~l~i~~~~~~~~~--~~~ekl~r~~~~~  365 (368)
T 3jue_A          309 META-NADIVTLLRL-AKMREAEAAQGQAGDETYLDIFRDFSLMAS--DDPEKLSRRSHDL  365 (368)
T ss_dssp             HHTT-CHHHHHHHHH-HHC------------------------------------------
T ss_pred             HHCC-CHHHHHHHHH-cCCCcccccccCCCCCCHHHHHHHHHhhcC--CCHHHHHhcCCCc
Confidence            7766 7777777776 43   3333445566777777665543221  1234444555444

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.80  E-value=1.9e-19  Score=185.36  Aligned_cols=207  Identities=18%  Similarity=0.125  Sum_probs=149.5

Q ss_pred             ccccccccHHHHHhhchHHHHHHHHhhhhcCCC-CchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCH
Q 005790           67 TVWDDEEQFDDVAKCRSKVARKLFLECKSKNGK-NSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTD  145 (677)
Q Consensus        67 ~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~-~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tp  145 (677)
                      .+.-+.+.++.+...|+..+..++..+...... .+.    .+....    .....-..+++................++
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~----~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~  133 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPN----PGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHS  133 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCC----TTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCC----CCCCHH----HHHHHHHHHHHHhhcccccccccchhhhh
Confidence            344466788888899998888887653322111 111    111111    11111122343333322222222223467


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhc---CCHHHHHHHHhcCCCcc
Q 005790          146 IFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARG---GNLKILKELLENCTDVL  222 (677)
Q Consensus       146 L~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~eivk~LL~~ga~~~  222 (677)
                      |+.| +..|+.+.++.|++.|++++....             ....+..|.||||+|+..   |+.+++++|+++|+++ 
T Consensus       134 l~~a-~~~~d~~~~~~ll~~g~~~~~~~~-------------l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-  198 (278)
T 1dcq_A          134 LCEA-VKTRDIFGLLQAYADGVDLTEKIP-------------LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-  198 (278)
T ss_dssp             HHHH-HHTTCHHHHHHHHHTTCCTTSBCC-------------CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-
T ss_pred             hhhH-hhhcccHHHHHHHHhhcchhhhcc-------------ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-
Confidence            7776 588999999999999998764320             011233468999999999   8999999999999999 


Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhh
Q 005790          223 TYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHS  302 (677)
Q Consensus       223 ~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~  302 (677)
                      +.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+         +.+++|.
T Consensus       199 n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga---------~~~~~~~  269 (278)
T 1dcq_A          199 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS---------GRFNSHV  269 (278)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT---------TCCCSSC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC---------CCCCcce
Confidence            8899999999999999999999999999999999999999999999999999999999999985         3466666


Q ss_pred             hhh
Q 005790          303 AVS  305 (677)
Q Consensus       303 A~~  305 (677)
                      ++.
T Consensus       270 ~v~  272 (278)
T 1dcq_A          270 HVE  272 (278)
T ss_dssp             CCC
T ss_pred             eee
Confidence            665

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.80  E-value=1.5e-19  Score=201.73  Aligned_cols=87  Identities=23%  Similarity=0.287  Sum_probs=44.3

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccC------CCCCCcHHHHHHH---hCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 005790          198 AVHAAARGGNLKILKELLENCTDVLTYR------DKQGSTILHAAAG---RGQVEVVKDLIASFDIINSTDHQGNTPLHI  268 (677)
Q Consensus       198 ~Lh~A~~~g~~eivk~LL~~ga~~~~~~------d~~g~TpL~~A~~---~g~~eivk~Ll~~ga~in~~d~~g~tpL~~  268 (677)
                      .||.|+..|+.++|+.||+.|+++ +..      +..|.||||+||.   .|+.++|++|+++|+++|..|..|+||||+
T Consensus       135 ~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~  213 (497)
T 3lvq_E          135 RLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY  213 (497)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred             HHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence            455555555555555555555554 222      4445555555533   455555555555555555555555555555


Q ss_pred             HHHcCCHHHHHHHHHhC
Q 005790          269 AAYRGQPAVVEALILAS  285 (677)
Q Consensus       269 A~~~g~~~iv~~LL~~g  285 (677)
                      |+..|+.+++++||++|
T Consensus       214 A~~~g~~~~v~~Ll~~g  230 (497)
T 3lvq_E          214 AALYNQPDCLKLLLKGR  230 (497)
T ss_dssp             HTTTTCHHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHHcC
Confidence            55555555555555544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.80  E-value=4e-19  Score=182.92  Aligned_cols=194  Identities=13%  Similarity=0.009  Sum_probs=142.3

Q ss_pred             ccccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCch
Q 005790           23 QWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSL  102 (677)
Q Consensus        23 ~~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~  102 (677)
                      +-|+.++|+++...|+..+.+++...-.....            .........   .........+++...   ......
T Consensus        63 d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~------------~kP~~~s~~---~~~~~fI~aKYl~~~---f~~~~~  124 (278)
T 1dcq_A           63 DVLGTSELLLAKNIGNAGFNEIMECCLPSEDP------------VKPNPGSDM---IARKDYITAKYMERR---YARKKH  124 (278)
T ss_dssp             SCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSC------------CSCCTTCCH---HHHHHHHHHHHTTCT---TSCCCS
T ss_pred             CCCCHHHHHHHHHcCcHHHHHHHHhhCChhhc------------CCCCCCCCH---HHHHHHHHHHHHHhh---cccccc
Confidence            33578999999999999888876543221100            000000011   111111222232221   111111


Q ss_pred             hhcCCCChHHHHHHHcCCHHHHHHHHHcCCCc-----cccCCCCCCCHHHHHHHhc--CCHHHHHHHHhcCCCccccccc
Q 005790          103 IRAGYGGWLLYTAASAGDLGFVKQLLDKNPLL-----VFGEGEYGVTDIFYAAARS--KNCDVFRLIYDFAVSPRFLTAK  175 (677)
Q Consensus       103 ~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~-----~~~~~~~g~tpL~~AA~~~--g~~evv~lLl~~Gad~~~~~~~  175 (677)
                      .......++|+.|+..|+.+.++.+++.|+..     ++..+..|.||||+||...  |+.+++++|+++|++++..+..
T Consensus       125 ~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~  204 (278)
T 1dcq_A          125 ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK  204 (278)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT
T ss_pred             cccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCC
Confidence            12223457899999999999999999999864     3345788999999997443  8999999999999999877654


Q ss_pred             CCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 005790          176 GGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI  254 (677)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~  254 (677)
                                         |+||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       205 -------------------g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          205 -------------------GSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             -------------------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             -------------------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                               479999999999999999999999999 88999999999999999999999999999986

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.79  E-value=1.6e-19  Score=192.75  Aligned_cols=166  Identities=18%  Similarity=0.195  Sum_probs=113.0

Q ss_pred             CCCCCCcHHHHHHHh-CCHHHHHHHHhcCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhh
Q 005790          225 RDKQGSTILHAAAGR-GQVEVVKDLIASFDIINSTD--HQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH  301 (677)
Q Consensus       225 ~d~~g~TpL~~A~~~-g~~eivk~Ll~~ga~in~~d--~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh  301 (677)
                      .+..+.|+||+|+.. ++++++++|+++|++++..+  ..|.||||+|+..|+.+++++|+++|+ +             
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga-d-------------  260 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA-N-------------  260 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC-C-------------
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCC-C-------------
Confidence            445667899999999 99999999999999999998  889999999999999999999999883 2             


Q ss_pred             hhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCc
Q 005790          302 SAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMT  381 (677)
Q Consensus       302 ~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~T  381 (677)
                                                         +|.+|..|.||||+|+..+ +.++|++||+ .|+|++.+|..|.|
T Consensus       261 -----------------------------------vn~~d~~G~TpLh~A~~~g-~~~~v~~LL~-~Gad~~~~d~~G~T  303 (368)
T 3jue_A          261 -----------------------------------VNQADSAGRGPLHHATILG-HTGLACLFLK-RGADLGARDSEGRD  303 (368)
T ss_dssp             -----------------------------------TTCCCTTSCCHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred             -----------------------------------CCCCCCCCCCHHHHHHHcC-cHHHHHHHHH-CcCCCCCcCCCCCC
Confidence                                               5667888999999999988 9999999999 99999999999999


Q ss_pred             HHHHHhhCCCCchHHHHHHHHHHcC---CCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCC
Q 005790          382 TLDLLKQRPQSASSDILIRHLISAG---GIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVS  453 (677)
Q Consensus       382 pL~~A~~~~~~~~~~~lv~~Ll~~G---adin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~  453 (677)
                      |||+|+..++.+    ++++|+.+|   ++....+..+.|++..+-.....        ..+..+.|+..|.+++
T Consensus       304 pL~~A~~~g~~~----iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~--------~~~~~ekl~r~~~~~~  366 (368)
T 3jue_A          304 PLTIAMETANAD----IVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLM--------ASDDPEKLSRRSHDLH  366 (368)
T ss_dssp             HHHHHHHTTCHH----HHHHHHHHHC-------------------------------------------------
T ss_pred             HHHHHHHCCCHH----HHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhh--------cCCCHHHHHhcCCCcC
Confidence            999999999988    566666655   44455567778887665443221        1234566777776654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.78  E-value=9.5e-19  Score=148.43  Aligned_cols=91  Identities=44%  Similarity=0.597  Sum_probs=87.7

Q ss_pred             cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 005790          195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ  274 (677)
Q Consensus       195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~  274 (677)
                      |+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            579999999999999999999999998 8899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 005790          275 PAVVEALILASP  286 (677)
Q Consensus       275 ~~iv~~LL~~g~  286 (677)
                      .+++++|+++|+
T Consensus        81 ~~~~~~Ll~~ga   92 (93)
T 1n0q_A           81 LEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999999884

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.76  E-value=1.2e-18  Score=153.90  Aligned_cols=109  Identities=36%  Similarity=0.525  Sum_probs=87.1

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhh
Q 005790          224 YRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA  303 (677)
Q Consensus       224 ~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A  303 (677)
                      ++|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.|+ +               
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~---------------   67 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA-D---------------   67 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC-C---------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC-C---------------
Confidence            467788888888888888888888888888888888888888888888888888888887763 2               


Q ss_pred             hhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHH
Q 005790          304 VSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL  383 (677)
Q Consensus       304 ~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL  383 (677)
                                                       ++.+|..|.||||+|+..+ +.+++++|++ .|+|+|.++..|.||-
T Consensus        68 ---------------------------------~~~~d~~g~tpl~~A~~~~-~~~~~~~Ll~-~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           68 ---------------------------------VNARSKDGNTPEHLAKKNG-HHEIVKLLDA-KGADVNARSWGSSHHH  112 (115)
T ss_dssp             ---------------------------------TTCCCTTCCCTTHHHHTTT-CHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred             ---------------------------------CcccCCCCCCHHHHHHHCC-CHHHHHHHHH-cCCCCCcCCccccccc
Confidence                                             4555677888888888877 8888888888 8888888888888763

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.76  E-value=2.4e-18  Score=145.88  Aligned_cols=93  Identities=28%  Similarity=0.466  Sum_probs=85.9

Q ss_pred             CCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHH
Q 005790          343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIAS  422 (677)
Q Consensus       343 ~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~  422 (677)
                      +|+||||+|+..+ +.+++++|++ .|+++|.+|..|+||||+|+..++.+    ++++|+++|++++.+|..|+||||+
T Consensus         1 ~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAARNG-HLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLE----VVKLLLEAGADVNAKDKNGRTPLHL   74 (93)
T ss_dssp             --CCHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcC-CHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCCHHHH
Confidence            4899999999988 9999999999 99999999999999999999999987    7899999999999999999999999


Q ss_pred             HHHHhCCCCCCCCccchhhHHHHHHcCCC
Q 005790          423 HIKMLGNGSSPGTSFRISDTEIFLYTGID  451 (677)
Q Consensus       423 al~~~~~~~~~~~~~~~~~v~~LL~~Gad  451 (677)
                      |+....          .+++++|+++||+
T Consensus        75 A~~~~~----------~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           75 AARNGH----------LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHTTC----------HHHHHHHHHTTCC
T ss_pred             HHHcCC----------HHHHHHHHHcCCC
Confidence            988533          8899999999986

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.74  E-value=1.6e-18  Score=153.05  Aligned_cols=109  Identities=31%  Similarity=0.415  Sum_probs=100.5

Q ss_pred             hhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 005790          190 YKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA  269 (677)
Q Consensus       190 ~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A  269 (677)
                      +++..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            34556789999999999999999999999998 78899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhCCCCccccCCCCCchh
Q 005790          270 AYRGQPAVVEALILASPSMISVKNTSGETFL  300 (677)
Q Consensus       270 ~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpL  300 (677)
                      +..|+.+++++|+++| ++++..+..|.+|-
T Consensus        83 ~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKG-ADVNARSWGSSHHH  112 (115)
T ss_dssp             HTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred             HHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence            9999999999999999 78999999988873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.65  E-value=5.1e-16  Score=136.03  Aligned_cols=91  Identities=33%  Similarity=0.406  Sum_probs=84.0

Q ss_pred             hhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 005790          190 YKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA  269 (677)
Q Consensus       190 ~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A  269 (677)
                      ..+..|.|+||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            34456789999999999999999999999998 77899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHH
Q 005790          270 AYRGQPAVVEAL  281 (677)
Q Consensus       270 ~~~g~~~iv~~L  281 (677)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.57  E-value=6e-15  Score=129.12  Aligned_cols=92  Identities=26%  Similarity=0.286  Sum_probs=81.9

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhh
Q 005790          223 TYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHS  302 (677)
Q Consensus       223 ~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~  302 (677)
                      ...+.+|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcHHHH
Confidence            446788999999999999999999999999999999999999999999999999999999998 7799999999999999


Q ss_pred             hhhcCchHHHHHh
Q 005790          303 AVSGFQTYAFRRL  315 (677)
Q Consensus       303 A~~~~~~~~~~~L  315 (677)
                      |+..++.++++.|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9997666655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	677
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-27
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-23
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-20
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-15
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-11
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	7e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-08
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	9e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 6e-27
 Identities = 62/301 (20%), Positives = 102/301 (33%), Gaps = 43/301 (14%)

Query: 111 LLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPR 170
           LL  A    D+  V+QLL+    + F E E G T +  A  +    D+  L         
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV-QMSREDIVEL--------- 57

Query: 171 FLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGS 230
                       +         +         A       L +L  +    +   D  G 
Sbjct: 58  -----------LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF 106

Query: 231 TILHAAAGRGQVEVVKDLIASFDIINSTDHQ----------GNTPLHIAAYRGQPAVVEA 280
           T    AA  G+V+ +K L      +N               G T L  AA +G   V++ 
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

Query: 281 LILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAK 340
           L+    + ++  +  G   L  A+          +     L+   A          +N +
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL--LLDHGAD---------VNVR 215

Query: 341 NNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIR 400
              G+T L +A+    HL LVQ L+    I +N  D+DG T L L  +      +++L +
Sbjct: 216 GERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

Query: 401 H 401
            
Sbjct: 275 R 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 1e-24
 Identities = 39/225 (17%), Positives = 81/225 (36%), Gaps = 7/225 (3%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDII 255
           N  +  A +  ++ ++++LLE   +V    ++ G T LH A    + ++V+ L+      
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRL 315
                 G TP  +AA  G   +++  +     +    +  G T    A    +  A +  
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKF- 123

Query: 316 DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVR 375
                  +          ++        G TAL  A     H+E++++L+     +VN  
Sbjct: 124 ----LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG-HVEVLKILLDEMGADVNAC 178

Query: 376 DNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAI 420
           DN G   L         +  + +   L+  G     +    +  +
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 1e-16
 Identities = 48/265 (18%), Positives = 82/265 (30%), Gaps = 42/265 (15%)

Query: 28  SPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVAR 87
           +P+  A      D+V  LLR   +                    ++         +    
Sbjct: 41  TPLHNAVQMSREDIVELLLRHGADP----------------VLRKKNGATPFLLAAIAGS 84

Query: 88  KLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLL---------DKNPLLVFGE 138
              L+     G +      YG      AA  G +  +K L           K        
Sbjct: 85  VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL 144

Query: 139 GEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRA 198
            + G T +  AA    + +V ++          L   G ++               +  A
Sbjct: 145 RKGGATALMDAA-EKGHVEVLKI---------LLDEMGADVN-----ACDNMGRNALIHA 189

Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI-INS 257
           + ++       I   LL++  DV   R ++G T L  A  +  + +V+ L+    I IN 
Sbjct: 190 LLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALI 282
           TD  G T L +A       + E L 
Sbjct: 249 TDSDGKTALLLAVELKLKKIAELLC 273

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 12/135 (8%)

Query: 27  ASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVA 86
           A+ +  AA  GH ++++ LL   G  +    ++ R                      +  
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR-------NALIHALLSSDDSDVEAI 201

Query: 87  RKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDI 146
             L L+    +G +  +R   G   L  A     LG V++LL++  + +      G T +
Sbjct: 202 THLLLD----HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257

Query: 147 FYAAARSKNCDVFRL 161
              A   K   +  L
Sbjct: 258 LL-AVELKLKKIAEL 271

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 6e-27
 Identities = 75/396 (18%), Positives = 141/396 (35%), Gaps = 57/396 (14%)

Query: 28  SPIDWAAANGHYDLVRELLR-------------------IDGNHLIKLTSLRRIRRLETV 68
           +P+  AA  GH ++ + LL+                       H   +  L  +      
Sbjct: 35  TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL--LENNANP 92

Query: 69  WDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLL 128
                         ++      +    +   +       G   L+ AA  G +   + LL
Sbjct: 93  NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 152

Query: 129 DKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKG----------GE 178
           +++       G+ G+T +  A     N D+ +L+     SP      G           +
Sbjct: 153 ERDAH-PNAAGKNGLTPLHVAV-HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 210

Query: 179 LEEHIEEIPSVYKWEMMNR----AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILH 234
           +E     +         +      +H AA+ G+ +++  LL    +     +K G T LH
Sbjct: 211 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLH 269

Query: 235 AAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNT 294
             A  G V V   LI    ++++T   G TPLH+A++ G   +V+  +L   + ++ K  
Sbjct: 270 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQADVNAKTK 328

Query: 295 SGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITG 354
            G + LH A            D    L+K  AS          N  ++DG T L +A   
Sbjct: 329 LGYSPLHQAAQ------QGHTDIVTLLLKNGAS---------PNEVSSDGTTPLAIAKRL 373

Query: 355 NVHLELVQLL--MSAPSINVNVRDNDGMTTLDLLKQ 388
             ++ +  +L  ++  +  V V D   M+  + + +
Sbjct: 374 G-YISVTDVLKVVTDETSFVLVSDKHRMSFPETVDE 408

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 8e-27
 Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 20/221 (9%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
            +H A+  G+L I+K LL+         + +  T LH AA  G  EV K L+ +   +N+
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDR 317
                 TPLH AA  G   +V+ L+  + +              +A  G        L++
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 318 QVKLMKQLASGQI-------FNMEDI----------INAKNNDGRTALHMAITGNVHLEL 360
           +         G         +    +           NA   +G T LH+A+  N +L++
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN-NLDI 180

Query: 361 VQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
           V+LL+     + +    +G T L +  ++ Q   +  L+++
Sbjct: 181 VKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 220

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 9e-23
 Identities = 71/369 (19%), Positives = 117/369 (31%), Gaps = 84/369 (22%)

Query: 29  PIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARK 88
           P+  A+  GH  +V+ LL                                          
Sbjct: 3   PLHVASFMGHLPIVKNLL------------------------------------------ 20

Query: 89  LFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFY 148
                  + G +  +        L+ AA AG     K LL      V  + +   T +  
Sbjct: 21  -------QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA-KVNAKAKDDQTPLHC 72

Query: 149 AAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMM------------- 195
            AAR  + ++ +L+ +   +P   T  G            V     +             
Sbjct: 73  -AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK 131

Query: 196 -NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
               +H AA+ G +++ + LLE          K G T LH A     +++VK L+     
Sbjct: 132 GFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 190

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
            +S    G TPLHIAA + Q  V  +L+       + ++  G T LH A           
Sbjct: 191 PHSPAWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAESVQGVTPLHLAAQEGHAEMVA- 248

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374
                          + + +   N  N  G T LH+      H+ +  +L+    + V+ 
Sbjct: 249 --------------LLLSKQANGNLGNKSGLTPLHLVAQEG-HVPVADVLIKH-GVMVDA 292

Query: 375 RDNDGMTTL 383
               G T L
Sbjct: 293 TTRMGYTPL 301

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (235), Expect = 2e-21
 Identities = 70/303 (23%), Positives = 107/303 (35%), Gaps = 33/303 (10%)

Query: 112 LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV---- 167
           L+ A+  G L  VK LL +             T +  AA R+ + +V + +         
Sbjct: 4   LHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAA-RAGHTEVAKYLLQNKAKVNA 61

Query: 168 ------SPRFLTAKGGELEEH---IEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENC 218
                 +P    A+ G        +E   +              A           L   
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 219 TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVV 278
                   K+G T LH AA  G+V V + L+      N+    G TPLH+A +     +V
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 279 EALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIIN 338
           + L+    S       +G T LH A    Q    R L                      N
Sbjct: 182 KLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSL---------------LQYGGSAN 225

Query: 339 AKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDIL 398
           A++  G T LH+A     H E+V  L+ +   N N+ +  G+T L L+ Q      +D+L
Sbjct: 226 AESVQGVTPLHLAAQEG-HAEMVA-LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 283

Query: 399 IRH 401
           I+H
Sbjct: 284 IKH 286

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 6e-11
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 17/106 (16%)

Query: 264 TPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMK 323
           TPLH+A++ G   +V+ L+    S  +V N   ET LH A     T   +       L++
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKY------LLQ 54

Query: 324 QLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPS 369
             A          +NAK  D +T LH A     H  +V+LL+   +
Sbjct: 55  NKAK---------VNAKAKDDQTPLHCAARIG-HTNMVKLLLENNA 90

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (238), Expect = 4e-23
 Identities = 45/225 (20%), Positives = 78/225 (34%), Gaps = 51/225 (22%)

Query: 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRG------------- 240
           + N  V   A  G L+ LKE +     + T  D+   T LH A   G             
Sbjct: 2   VSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 61

Query: 241 --------------------QVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEA 280
                               + E+VK L+     +N+ +  G TPLH AA + +  +   
Sbjct: 62  PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 121

Query: 281 LILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAK 340
           L+    +    K+    T +H A +         L                  +   N +
Sbjct: 122 LLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHIL---------------LYYKASTNIQ 165

Query: 341 NNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
           + +G T LH+A      +E  +LL+S    ++ + + +  T L +
Sbjct: 166 DTEGNTPLHLACDEE-RVEEAKLLVSQ-GASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (219), Expect = 1e-20
 Identities = 43/254 (16%), Positives = 90/254 (35%), Gaps = 39/254 (15%)

Query: 111 LLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPR 170
           ++   A +G L  +K+ +  +  L     +   T + +A +      V            
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF---------- 55

Query: 171 FLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGS 230
                       ++    V   +    +    A       + + L      +   ++ G 
Sbjct: 56  -----------LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC 104

Query: 231 TILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMIS 290
           T LH AA + + E+   L+      ++ DH   T +H AA +G   ++  L+    +  +
Sbjct: 105 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL-YYKASTN 163

Query: 291 VKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM 350
           +++T G T LH            R++    L+ Q AS         I  +N + +T L +
Sbjct: 164 IQDTEGNTPLH------LACDEERVEEAKLLVSQGAS---------IYIENKEEKTPLQV 208

Query: 351 AITGNVHLELVQLL 364
           A  G     +++ +
Sbjct: 209 AKGG--LGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 47/250 (18%), Positives = 86/250 (34%), Gaps = 38/250 (15%)

Query: 33  AAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLE 92
            A +G  + ++E +  D +   +     R     T                 +   + + 
Sbjct: 10  LAYSGKLEELKESILADKSLATRTDQDSR-----TALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 93  CKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAAR 152
            K   G + L  A   G              + + L      V    + G T + YAA++
Sbjct: 65  DKDDAGWSPLHIAASAGR-----------DEIVKALLGKGAQVNAVNQNGCTPLHYAASK 113

Query: 153 SKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILK 212
           +++     L+             G   +          K      A+H AA  GNLK++ 
Sbjct: 114 NRHEIAVMLL-----------EGGANPDA---------KDHYEATAMHRAAAKGNLKMIH 153

Query: 213 ELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYR 272
            LL         +D +G+T LH A    +VE  K L++    I   + +  TPL +A   
Sbjct: 154 ILLYYKASTNI-QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-G 211

Query: 273 GQPAVVEALI 282
           G   +++ ++
Sbjct: 212 GLGLILKRMV 221

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.5 bits (223), Expect = 1e-20
 Identities = 30/205 (14%), Positives = 70/205 (34%), Gaps = 31/205 (15%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQ----VEVVKDLIAS 251
           N  +H      NL+++K L+++ ++   Y D  G + L  A               L   
Sbjct: 108 NTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 166

Query: 252 FDIINSTDHQGNTPLHIAAYRGQP------------AVVEALILASPSMISVKNTSGETF 299
           +  +   D    T LH                     ++  ++      I       E+ 
Sbjct: 167 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 226

Query: 300 LHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLE 359
            +      +      LD +            + + +++NA++++G T L++A     ++ 
Sbjct: 227 PNDKNGERKDSILENLDLK------------WIIANMLNAQDSNGDTCLNIAARLG-NIS 273

Query: 360 LVQLLMSAPSINVNVRDNDGMTTLD 384
           +V  L+     +  + +  G+  +D
Sbjct: 274 IVDALLDY-GADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.2 bits (186), Expect = 1e-15
 Identities = 39/240 (16%), Positives = 81/240 (33%), Gaps = 11/240 (4%)

Query: 170 RFLTAKGGELEEHIEEIPSVYKWEMM---NRAVHAAARGGNLKILKELLENCTDVLTYRD 226
           R L  +  E+   +    S    E      +  H +      ++         ++    D
Sbjct: 45  RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVD 104

Query: 227 KQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPA---VVEALIL 283
           + G+T LH       +E+VK L+         D+ G + L  A            EAL+ 
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 164

Query: 284 ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNND 343
                + ++++   T LH  +    T          K    +  G I   ++       +
Sbjct: 165 YLYPCLILEDSMNRTILHHII---ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 221

Query: 344 GRTALHMAITGNVHLELVQLLMSAPSI--NVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
            + +      G     +++ L     I   +N +D++G T L++  +    +  D L+ +
Sbjct: 222 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY 281

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.0 bits (162), Expect = 1e-12
 Identities = 33/244 (13%), Positives = 65/244 (26%), Gaps = 57/244 (23%)

Query: 112 LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRF 171
           L+   S  +L  VK L+             G + +  A     N D              
Sbjct: 111 LHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 169

Query: 172 LTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGST 231
           L  +       +  I              AAA+     ++  +++     +     +  +
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGC----SAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 232 ILHAAAGRGQVEVVKDLIASFDI---INSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
             +   G  +  ++++L   + I   +N+ D  G+T L+IAA  G  ++V+A        
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA-------- 277

Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
                                           L+   A              N  G   +
Sbjct: 278 --------------------------------LLDYGAD---------PFIANKSGLRPV 296

Query: 349 HMAI 352
               
Sbjct: 297 DFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.9 bits (141), Expect = 5e-10
 Identities = 31/245 (12%), Positives = 60/245 (24%), Gaps = 55/245 (22%)

Query: 28  SPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVAR 87
           +P+ W  +  + +LV+ L++   N                                    
Sbjct: 109 TPLHWLTSIANLELVKHLVKHGSN------------------------------------ 132

Query: 88  KLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIF 147
                     G++ L++A        +      L ++   L         E     T + 
Sbjct: 133 ---RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL-------EDSMNRTILH 182

Query: 148 YAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGN 207
           +    S           +         K                        +       
Sbjct: 183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS-------GTNEKESKPNDKNGERK 235

Query: 208 LKILKELLEN--CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265
             IL+ L       ++L  +D  G T L+ AA  G + +V  L+         +  G  P
Sbjct: 236 DSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 295

Query: 266 LHIAA 270
           +   A
Sbjct: 296 VDFGA 300

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.6 bits (192), Expect = 8e-17
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 7/164 (4%)

Query: 221 VLTYRDKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAV 277
           V  Y  + G T LH A        +  L+   A  + ++  +  G T LH+AA  G+ + 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 278 VEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDII 337
           VE L  A   ++  +         +      T A   L  +    +  +   +   +D  
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC- 119

Query: 338 NAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMT 381
               +       +    N   E          + +   + DG T
Sbjct: 120 --TPDTSHAPAAVDSQPNPENEEEPRDEDWR-LQLEAENYDGHT 160

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.1 bits (183), Expect = 1e-15
 Identities = 46/240 (19%), Positives = 77/240 (32%), Gaps = 40/240 (16%)

Query: 198 AVHAAARGGNLKILKELLENCTDV--LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDII 255
           A+H A    +   L  LL        L  ++  G T LH AA  G+   V+ L A+   +
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRL 315
              +  G+T LH+A           L+   PS       + +T+L  +       +    
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPSHP---RDASDTYLTQSQDCTPDTSHAPA 128

Query: 316 DRQVKLMKQLASGQIFNMEDI-INAKNNDGRTALHMAITGNV------------------ 356
               +   +           + + A+N DG T LH+A+                      
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 357 ---------------HLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
                             +++LL+ A   +   R   G T L     RP    + +L  H
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 1e-11
 Identities = 46/271 (16%), Positives = 77/271 (28%), Gaps = 51/271 (18%)

Query: 112 LYTAASAGDLGFVKQLLDK--NPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSP 169
           L+ A       F+  LL        +  + + G T +  AA   +   V +         
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK--------- 63

Query: 170 RFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLT------ 223
                       +      +      + A+H A R         LL+             
Sbjct: 64  -----------LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112

Query: 224 -------YRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPA 276
                    D   +     +    + E           + + ++ G+TPLH+A       
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172

Query: 277 VVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI 336
           +V  L  A   +   + T G T LH AV          L      +K  A          
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL------LKAGAD--------- 217

Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSA 367
             A+   GRT L  A+    +  L +LL + 
Sbjct: 218 PTARMYGGRTPLGSALLRP-NPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 8e-10
 Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 24/257 (9%)

Query: 28  SPIDWAAANGHYDLVRELLR--IDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKV 85
           + +  A  + H   +  LL       +L     L +          E    +        
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE-------- 62

Query: 86  ARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTD 145
                       G   L+    G   L+ A           LL   P           +D
Sbjct: 63  -------KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP-----SHPRDASD 110

Query: 146 IFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARG 205
            +   ++    D           P     +    E+   ++ +  +    +  +H A   
Sbjct: 111 TYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA--ENYDGHTPLHVAVIH 168

Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265
            + ++++ L +   D+       G T LH A       V++ L+ +     +  + G TP
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP 228

Query: 266 LHIAAYRGQPAVVEALI 282
           L  A  R  P +   L 
Sbjct: 229 LGSALLRPNPILARLLR 245

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 78.0 bits (191), Expect = 4e-16
 Identities = 54/356 (15%), Positives = 99/356 (27%), Gaps = 43/356 (12%)

Query: 30  IDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKL 89
           I W       +L +  +  +   L+ L+    I        + EQ       +       
Sbjct: 19  IPWILWE---NLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVR-----QLLCLYYA 70

Query: 90  FLECKSKNGKNSLIRAGYGGW-LLYTAASAGDLGFVK--QLLDKNPLLVFGEGEYGVTDI 146
                +K   +   + G     + + AA  G    +    LL  +  +V           
Sbjct: 71  HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ-A 129

Query: 147 FYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGG 206
           F  AA + +  V                    L E                A   AA  G
Sbjct: 130 FRLAAENGHLHVLNR-----------------LCELAPTEIMAMIQAENYHAFRLAAENG 172

Query: 207 NLKILKELLENCTDVLTY--RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD----- 259
           +L +L  L E      T   + +       AA GRG   V+  L+    ++   +     
Sbjct: 173 HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE 232

Query: 260 --HQGNTPLHIAAYRGQPAVVEALILASPS-MISVKNTSGETFLHSAVSGFQTYAFRRLD 316
              +   P           + +A  L++P  +  +   S        +          L 
Sbjct: 233 YGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLL 292

Query: 317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINV 372
             ++ +  L+   I  +         D    L +A+    +     LL+S PS+  
Sbjct: 293 DDIRFL--LSIPGIKALAPT-ATIPGDANELLRLALRLG-NQGACALLLSIPSVLA 344

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 73.0 bits (178), Expect = 2e-14
 Identities = 30/260 (11%), Positives = 63/260 (24%), Gaps = 55/260 (21%)

Query: 28  SPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVAR 87
                AA NGH  ++  L  +    ++ +             ++   F   A+       
Sbjct: 128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQ----------AENYHAFRLAAENGHLHVL 177

Query: 88  KLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIF 147
               E        ++I+A       + A   G    +  LLD                  
Sbjct: 178 NRLCELAP-TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC--------PVMLAYAEI 228

Query: 148 YAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGN 207
           +                            GE   +      V + + M+ A   +   G 
Sbjct: 229 HEFEY------------------------GEKYVNPFIARHVNRLKEMHDAFKLSNPDGV 264

Query: 208 LKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI-----INSTDHQG 262
             ++ +           +       L        ++ ++ L++   I       +     
Sbjct: 265 FDLVTKSECL-------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA 317

Query: 263 NTPLHIAAYRGQPAVVEALI 282
           N  L +A   G       L+
Sbjct: 318 NELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 73.0 bits (178), Expect = 2e-14
 Identities = 34/240 (14%), Positives = 67/240 (27%), Gaps = 42/240 (17%)

Query: 207 NLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQ---VEVVKDLIASFDIINSTDHQGN 263
                +   +  +D    +  +   I   AA  G    ++ +  L+ S +I+     +  
Sbjct: 69  YAHYNRNAKQLWSD-AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENY 127

Query: 264 TPLHIAAYRGQPAVVEALILASPSM-ISVKNTSGETFLHSAVSGFQTYAFRRLDRQ---- 318
               +AA  G   V+  L   +P+  +++           A      +   RL       
Sbjct: 128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187

Query: 319 -------------------------VKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT 353
                                    +  +  L    +    +I   +  +      +A  
Sbjct: 188 ATAMIQAENYYAFRWAAVGRGHHNVINFL--LDCPVMLAYAEIHEFEYGEKYVNPFIARH 245

Query: 354 GNVHLELVQLLMSA-PSINVNVRDND----GMTTLDLLKQRPQSASSDILIRHLISAGGI 408
            N   E+      + P    ++        G   L  L +R      D  IR L+S  GI
Sbjct: 246 VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDD-IRFLLSIPGI 304

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.7 bits (179), Expect = 2e-15
 Identities = 33/234 (14%), Positives = 69/234 (29%), Gaps = 31/234 (13%)

Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS---- 251
           N  +H A        ++ELL +   +L  +D+ G   LH +      E+   L++     
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 252 -------------FDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
                        F I  S  +                        +   ++V     E 
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 299 FLHSAVSGFQTYAFRRLDR------QVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI 352
                 +G       + ++            +L        +  +N ++  G T L  A+
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 353 TGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAG 406
               H +   LL+       ++ DN G    D+       A ++ + +  ++  
Sbjct: 181 A-EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV-------ALNEQVKKFFLNNV 226

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.2 bits (175), Expect = 9e-15
 Identities = 43/255 (16%), Positives = 81/255 (31%), Gaps = 34/255 (13%)

Query: 112 LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRF 171
           L+ A    +   V++LL   P L+  + + G   + ++ +   +     L+         
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 172 LTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGST 231
                                 + +                         L     QG T
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVVKSLYDR----------------PLKPDLNKITNQGVT 107

Query: 232 ILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISV 291
            LH A G+   EV + LI +   +   D     PLH AA  G   ++E L     S ++ 
Sbjct: 108 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 167

Query: 292 KNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMA 351
           ++  G T L  A++     A   L     + K  A           +  +N G  A  +A
Sbjct: 168 QDKQGWTPLFHALAEGHGDAAVLL-----VEKYGAE---------YDLVDNKGAKAEDVA 213

Query: 352 ITGNVHLELVQLLMS 366
               ++ ++ +  ++
Sbjct: 214 ----LNEQVKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 37/262 (14%), Positives = 71/262 (27%), Gaps = 49/262 (18%)

Query: 29  PIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARK 88
           P+  A     +  V+ELL    +                                     
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSL------------------------------------ 26

Query: 89  LFLECKSKNGKNSLIRAGYGG--WLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDI 146
             L  K ++G+  L  +       +     S  +   +    D +    F          
Sbjct: 27  --LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 84

Query: 147 FYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIE-----EIPSVYKWEMMNRAVHA 201
              +   +                   A G +  E  +           K +     +H 
Sbjct: 85  VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHR 144

Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI-INSTDH 260
           AA  G+LK+++ L       + ++DKQG T L  A   G  +    L+  +    +  D+
Sbjct: 145 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 204

Query: 261 QGNTPLHIAAYRGQPAVVEALI 282
           +G     +A       V +  +
Sbjct: 205 KGAKAEDVAL---NEQVKKFFL 223

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 73.2 bits (178), Expect = 8e-15
 Identities = 41/255 (16%), Positives = 80/255 (31%), Gaps = 15/255 (5%)

Query: 28  SPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVAR 87
           + + W A+N   +   +L+  +    I           +    D ++   +        R
Sbjct: 35  TVLHWIASNSSAEKSEDLIVHEAKECIA-------AGADVNAMDCDENTPLMLAVLARRR 87

Query: 88  KLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIF 147
           +L           ++        L + AA+  D G +  +L+   L    E         
Sbjct: 88  RLVAYLMKAGADPTIYNKSERSAL-HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 146

Query: 148 YAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGN 207
                                   L  + G   ++        +      A+H AA+  N
Sbjct: 147 LMIVAHNEGRDQVASA-------KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 199

Query: 208 LKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH 267
           + I+K L+         +D+ G T +  AA  G++EVV  LI     + + D   +T   
Sbjct: 200 MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQ 259

Query: 268 IAAYRGQPAVVEALI 282
           +A       +V+   
Sbjct: 260 LAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.8 bits (156), Expect = 5e-12
 Identities = 31/242 (12%), Positives = 68/242 (28%), Gaps = 41/242 (16%)

Query: 198 AVHAAARGGNLKILKELLENCTDVL-------TYRDKQGSTILHAAAGRGQVEVVKDLIA 250
            +H  A   + +  ++L+ +               D   +T L  A    +  +V  L+ 
Sbjct: 36  VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK 95

Query: 251 SFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH----SAVSG 306
           +       +    + LH AA      ++  ++ ++     ++             +   G
Sbjct: 96  AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG 155

Query: 307 FQTYAFRRLDRQVKLMKQLASGQIFNMEDI----------------------------IN 338
               A  +L  +             + E                               +
Sbjct: 156 RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD 215

Query: 339 AKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDIL 398
            ++ DG+T + +A      +E+V  L+     +V   D    T   L +        DI 
Sbjct: 216 KQDEDGKTPIMLAAQEG-RIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIF 273

Query: 399 IR 400
            R
Sbjct: 274 DR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.4 bits (150), Expect = 3e-11
 Identities = 40/263 (15%), Positives = 82/263 (31%), Gaps = 51/263 (19%)

Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI---- 254
           +H  A  G+  I + +     +++    +   T+LH  A     E  +DLI         
Sbjct: 6   LHTEA-AGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 62

Query: 255 ----INSTDHQGNTPLHIAAYR---------------------------------GQPAV 277
               +N+ D   NTPL +A                                        +
Sbjct: 63  AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGM 122

Query: 278 VEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDII 337
           +  ++ ++     ++           +        +    ++ + K              
Sbjct: 123 MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR--K 180

Query: 338 NAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDI 397
           +++   GRTALH       ++ +V+ L+     N + +D DG T + L  Q  +      
Sbjct: 181 DSEKYKGRTALHY-AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE---- 235

Query: 398 LIRHLISAGGIFGCQDYSARRAI 420
           ++ +LI  G      D +   A 
Sbjct: 236 VVMYLIQQGASVEAVDATDHTAR 258

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 41/288 (14%), Positives = 87/288 (30%), Gaps = 53/288 (18%)

Query: 112 LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV---- 167
           +     A     + + + +  + +  +  +  T + + A  + + +    +         
Sbjct: 4   IKLHTEAAGSYAITEPITRESVNI-IDPRHNRTVLHWIA-SNSSAEKSEDLIVHEAKECI 61

Query: 168 --------------SPRFLTAKGGELEEHIEEIPSVYKWEMMN----RAVHAAARGGNLK 209
                         +P  L             + +     + N     A+H AA   +  
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG 121

Query: 210 ILKELLEN--CTDVLTYRDKQGSTILHAAAGRG-----------QVEVVKDLIASFDIIN 256
           ++  +L +      +   D+ G T L   A                +  K         +
Sbjct: 122 MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD 181

Query: 257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD 316
           S  ++G T LH AA      +V+ L+    S    ++  G+T +  A    +      L 
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL- 240

Query: 317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLL 364
                ++Q AS         + A +    TA  +A   N H  +V + 
Sbjct: 241 -----IQQGAS---------VEAVDATDHTARQLAQANN-HHNIVDIF 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.6 bits (153), Expect = 1e-11
 Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 16/216 (7%)

Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
              AA   G+ + +  LLE   D+  Y +  G T LH A     V++VK L+ +   IN 
Sbjct: 43  VFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101

Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQ--------- 308
            D++G  PLH AA  G   + E LI     + +  N+ G+T L  A              
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 309 ---TYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLM 365
                       + ++M + A   + +           G TALH+A     + E+++LL+
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG-YTEVLKLLI 219

Query: 366 SAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
            A   +VN++D DG T L       +  +  IL+ +
Sbjct: 220 QARY-DVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.2 bits (152), Expect = 2e-11
 Identities = 46/237 (19%), Positives = 76/237 (32%), Gaps = 41/237 (17%)

Query: 108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAAR--------------- 152
            G +   A S+GD   V +LL++    +      G+T +  A                  
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 153 -------SKNCDVFRLIYDFAVSPRFLTAKG---------GELEEHIEEIPSVYKWEMMN 196
                              +     +L ++G         G+    I E  ++ +     
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 197 RAVHAA--------ARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDL 248
                              L+  ++ L +         K G T LH AA +G  EV+K L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 249 IASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
           I +   +N  D+ G TPLH AA+ G+      L+      +   N  G+T    A  
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 38/248 (15%), Positives = 76/248 (30%), Gaps = 29/248 (11%)

Query: 32  WAAANGHYDLVRELLR---------IDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCR 82
            A ++G  + V  LL          +DG   +    +     +     +     +     
Sbjct: 46  AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105

Query: 83  SKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYG 142
             +       C   +    LI  G     + +          ++ +++            
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165

Query: 143 VTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAA 202
           +        R    D  + +    ++                    V   +    A+H A
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHIND-------------------VRHAKSGGTALHVA 206

Query: 203 ARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG 262
           A  G  ++LK L++   DV   +D  G T LHAAA  G+ E  + L+ +   + + +  G
Sbjct: 207 AAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265

Query: 263 NTPLHIAA 270
            T   +A 
Sbjct: 266 QTAFDVAD 273

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.3 bits (147), Expect = 3e-11
 Identities = 45/209 (21%), Positives = 69/209 (33%), Gaps = 48/209 (22%)

Query: 209 KILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHI 268
           +++ +LL    ++    DK G T LH AA   + +  K L+ +    NS D+ G TPLH 
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 269 AAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASG 328
           A       V + L+    + ++ +   G T L  A           L             
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT----------- 111

Query: 329 QIFNMEDIINAKNNDGRTALHMAITGNVH------------------------------- 357
                 DI NA +N G+TALH A   N                                 
Sbjct: 112 ---ADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREG 167

Query: 358 -LELVQLLMSAPSINVNVRDNDGMTTLDL 385
             E  + L+     N  + D+      D+
Sbjct: 168 SYEASKALLDN-FANREITDHMDRLPRDV 195

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 51/241 (21%), Positives = 83/241 (34%), Gaps = 37/241 (15%)

Query: 124 VKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI 183
           +  LL +   L     + G T +  AA R    D  + + D                   
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAA-RFARADAAKRLLDA------------------ 45

Query: 184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVE 243
               +  +       +HAA     + + + LL N    L  R   G+T L  AA      
Sbjct: 46  -GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEG 104

Query: 244 VVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
           +V+DLI +   IN+ D+ G T LH AA       V  L++   +    ++   ET L  A
Sbjct: 105 MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLA 163

Query: 304 VSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQL 363
                  A + L      +   A+             ++  R    +A     H ++V+L
Sbjct: 164 AREGSYEASKAL------LDNFAN---------REITDHMDRLPRDVASERL-HHDIVRL 207

Query: 364 L 364
           L
Sbjct: 208 L 208

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 8e-11
 Identities = 34/175 (19%), Positives = 58/175 (33%), Gaps = 23/175 (13%)

Query: 108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV 167
            G  L  AA+ GD+  V++LL +  +       +G T +      S    +  L    + 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDK 227
           + +  +      +          K  +                           +   D 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVE----------------------HGADVNVPDG 99

Query: 228 QGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
            G+  +H A   G   VV  L A  D+ +  D +G TPL +A  RG   +V+ L 
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLAAESDL-HRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 3e-09
 Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 20/159 (12%)

Query: 261 QGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR------ 314
           +    L  AA RG    V  L+          N  G+T L   + G    A         
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 315 -----------LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQL 363
                      +    +         +      +N  +  G   +H+A+       +  L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 364 LMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHL 402
              +   +++ RD  G+T L+L  QR      DIL  H+
Sbjct: 121 AAES---DLHRRDARGLTPLELALQRGAQDLVDILQGHM 156

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 1e-10
 Identities = 34/258 (13%), Positives = 67/258 (25%), Gaps = 43/258 (16%)

Query: 28  SPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVAR 87
           +P+  A   G+   V  L+ +      +L                               
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQGGREL------------------------------- 33

Query: 88  KLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIF 147
               +  +   +  L  A                     L            E+      
Sbjct: 34  ----DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCL 89

Query: 148 YAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI-------PSVYKWEMMNRAVH 200
            A   S       L          L        +   ++             +     + 
Sbjct: 90  RALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI 149

Query: 201 AAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDH 260
            A    +L +  +LL      +  +   GS+ LH+A+GRG + +V+ L+ S    +  + 
Sbjct: 150 HAVENNSLSM-VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 208

Query: 261 QGNTPLHIAAYRGQPAVV 278
             +TPL +A  R    ++
Sbjct: 209 HNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 2e-10
 Identities = 45/217 (20%), Positives = 77/217 (35%), Gaps = 27/217 (12%)

Query: 198 AVHAAARGGNLKILKELLENCTDV---LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
            +H A   GNL  +  L+         L   +    T LH A       VV+ L+ +   
Sbjct: 6   PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 65

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILA---SPSMISVKNTSGETFLHSAVSGFQTYA 311
             + D  G T  H+A     P  + AL+ +       +  +N  G T LH AV+      
Sbjct: 66  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 125

Query: 312 FRRLDRQ-------------------VKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI 352
            + L  +                   V+         +      +NA+   G +ALH A 
Sbjct: 126 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 185

Query: 353 TGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQR 389
                L LV+ L+ +   + ++++    T L + + R
Sbjct: 186 GRG-LLPLVRTLVRS-GADSSLKNCHNDTPLMVARSR 220

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 343 DGRTALHMAITGNVHLELVQLLMSAPS---INVNVRDNDGMTTLDL 385
           DG T LH+A+    +L  V  L++        +++ +N   T L L
Sbjct: 2   DGDTPLHIAVVQG-NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL 46

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 3/93 (3%)

Query: 262 GNTPLHIAAYRGQPAVVEALI---LASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQ 318
           G+TPLHIA  +G    V  L+         + + N   +T LH AV        R L   
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 319 VKLMKQLASGQIFNMEDIINAKNNDGRTALHMA 351
                 L              ++     AL  +
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDS 95

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (130), Expect = 2e-09
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 19/170 (11%)

Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
           + + +  AAR G    ++ L+ N        D  G++ LH AA  G     + L+ +   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
            ++      TPLH+AA  G   +VE L+     + +       T LH A           
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML-KMTALHWATEHNHQEV--- 115

Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLL 364
               V+L+              ++ ++   +TA  ++I    + +L ++L
Sbjct: 116 ----VELL--------IKYGADVHTQSKFCKTAFDISIDNG-NEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 28/171 (16%), Positives = 43/171 (25%), Gaps = 25/171 (14%)

Query: 112 LYTAASAGDLGFVKQLLDKN-PLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPR 170
           L  AA AG    V+ L+    P      G   +         S    + R         +
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65

Query: 171 FLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGS 230
                          +         N        G ++                +D    
Sbjct: 66  V----------DRTPLHMAASEGHANIVEVLLKHGADVN--------------AKDMLKM 101

Query: 231 TILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
           T LH A      EVV+ LI     +++      T   I+   G   + E L
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (95), Expect = 8e-05
 Identities = 18/138 (13%), Positives = 33/138 (23%), Gaps = 14/138 (10%)

Query: 262 GNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQV 319
               L  AA  GQ   V  L+   A  +   +  +                  R    + 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 320 KLMKQLASGQIFN----MEDIINAKNNDGRTALHMAITGNVHL--------ELVQLLMSA 367
              K   +           +I+      G       +     L        + V  L+  
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121

Query: 368 PSINVNVRDNDGMTTLDL 385
              +V+ +     T  D+
Sbjct: 122 YGADVHTQSKFCKTAFDI 139

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (132), Expect = 3e-09
 Identities = 36/204 (17%), Positives = 62/204 (30%), Gaps = 30/204 (14%)

Query: 229 GSTILHAAAGRGQVEVVKDLIASF----DIINSTDHQGNTPLHIAAYRGQPAVVEALILA 284
           G + LH A    +  +  ++I         +N  ++   TPLH+A    QP + EAL+ A
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 285 SPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMK--------------------- 323
                            +   G                                      
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 324 ---QLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGM 380
               +    +    D+   +  +GRTALH+      + +LV LL+     +VN     G 
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHL-AVDLQNPDLVSLLLKC-GADVNRVTYQGY 179

Query: 381 TTLDLLKQRPQSASSDILIRHLIS 404
           +   L   RP +     L +  + 
Sbjct: 180 SPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 8e-08
 Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 22/194 (11%)

Query: 111 LLYTAASAGDLGFVKQLLDK---NPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV 167
            L+ A    +     +++ +   +   +  +     T +  A   ++      L+     
Sbjct: 5   FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 64

Query: 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNR-------------------AVHAAARGGNL 208
                      L    E+        +                       +H A+  G L
Sbjct: 65  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 124

Query: 209 KILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHI 268
            I++ L+    DV       G T LH A      ++V  L+     +N   +QG +P  +
Sbjct: 125 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 184

Query: 269 AAYRGQPAVVEALI 282
              R    + + L 
Sbjct: 185 TWGRPSTRIQQQLG 198

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 31/210 (14%), Positives = 61/210 (29%), Gaps = 28/210 (13%)

Query: 196 NRAVHAAARGGNLKILKELLENCTD---VLTYRDKQGSTILHAAAGRGQVEVVKDLIASF 252
           +  +H A       +  E++         L +++    T LH A    Q E+ + L+ + 
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 253 DIINSTDHQGNTPLHIAAYRGQPAVVEALILAS------------------PSMISVKNT 294
                 D +GNTPLH+A  +G  A V  L  +                      ++  + 
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 295 SGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDII------NAKNNDGRTAL 348
                      G    A    + +  L   +       +  ++      N     G +  
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY 182

Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDND 378
            +         + Q L      N+ +    
Sbjct: 183 QLTWGRP-STRIQQQLGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 8e-06
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 343 DGRTALHMAITGN---VHLELVQLLMSAPSINVNVRDNDGMTTL 383
           DG + LH+AI      + +E+++ +    +  +N ++N   T L
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLA-FLNFQNNLQQTPL 43

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 4e-09
 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 18/152 (11%)

Query: 233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVK 292
           L +AA RG +E +  L+ +   +N+ +  G T L +            L+  +   +  +
Sbjct: 5   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDR 64

Query: 293 NTSGETFLHSAVSGFQTYAFRRLDRQVKLM-----------------KQLASGQIFNMED 335
                    +      T       +    +                  ++    + +   
Sbjct: 65  TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 124

Query: 336 IINAKNNDGRTALHMAITGNVHLELVQLLMSA 367
            +  +N+ G TA  +A       E+V L+ + 
Sbjct: 125 NVGHRNHKGDTACDLARLYG-RNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 29/175 (16%), Positives = 55/175 (31%), Gaps = 24/175 (13%)

Query: 109 GWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVS 168
           G  L +AA+ GDL  +  LL  N             ++       +       + +  ++
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNV------------NVNAQNGFGRTALQVMKLGNPEIA 49

Query: 169 PRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQ 228
            R L        +       ++                               +   D +
Sbjct: 50  RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTL-----------LEFQADVNIEDNE 98

Query: 229 GSTILHAAAGRGQVEVVKDLIASFDI-INSTDHQGNTPLHIAAYRGQPAVVEALI 282
           G+  LH AA  G + VV+ L+      +   +H+G+T   +A   G+  VV  + 
Sbjct: 99  GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (126), Expect = 6e-09
 Identities = 21/151 (13%), Positives = 37/151 (24%), Gaps = 20/151 (13%)

Query: 233 LHAAAGRGQVEVVKDLIAS-FDI-----INSTDHQGNTPLHIAAYRGQPAVVEALILASP 286
           L  A     +  +    A   D+     + +      T LH+A        +  +     
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 287 SMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRT 346
           +  ++                       L              +   +  I   N  G T
Sbjct: 70  NSGNLDKQ-------------TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGET 116

Query: 347 ALHMAITGNVHLELVQLLMSAPSINVNVRDN 377
            L +A     H    +LL  A S   N   +
Sbjct: 117 PLDIAKRLK-HEHCEELLTQALSGRFNSHVH 146

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 21/128 (16%), Positives = 34/128 (26%), Gaps = 41/128 (32%)

Query: 198 AVHAAARGGNLKILKELLENCTDV-----LTYRDKQGSTILHAAA---GRGQVEVVKDLI 249
           ++  A +  ++  L +   +  D+     L    +   T LH A     R  + +V  L+
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 250 A---------------------------------SFDIINSTDHQGNTPLHIAAYRGQPA 276
                                                 I   +  G TPL IA       
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 128

Query: 277 VVEALILA 284
             E L  A
Sbjct: 129 CEELLTQA 136

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 16/138 (11%)

Query: 231 TILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMIS 290
            +L  ++  G+ ++V+ +I   D  +  + +G T LH A   G              ++ 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH-----------TEIVK 51

Query: 291 VKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM 350
                G     +   G+           V++ K L    + +   +     +D +TA   
Sbjct: 52  FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL----VESGAAVFAMTYSDMQTAADK 107

Query: 351 AI-TGNVHLELVQLLMSA 367
                  + +  Q L   
Sbjct: 108 CEEMEEGYTQCSQFLYGV 125

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 18/142 (12%), Positives = 37/142 (26%), Gaps = 23/142 (16%)

Query: 111 LLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPR 170
           LL  ++  G+   V++++ +               +      +   +     +   V   
Sbjct: 4   LLLDSSLEGEFDLVQRIIYEVDDP----------SLPNDEGITALHNAVCAGHTEIVKFL 53

Query: 171 FLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDV--LTYRDKQ 228
                     +     P        N  V            K L+E+   V  +TY D Q
Sbjct: 54  VQFGVNVNAADSDGWTPLHCAASCNNVQVC-----------KFLVESGAAVFAMTYSDMQ 102

Query: 229 GSTILHAAAGRGQVEVVKDLIA 250
            +         G  +  + L  
Sbjct: 103 TAADKCEEMEEGYTQCSQFLYG 124

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 35/124 (28%)

Query: 200 HAAARGGNLKILKELLENCTDV--------------------------------LTYRDK 227
             ++  G   +++ ++    D                                 +   D 
Sbjct: 6   LDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS 65

Query: 228 QGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILA 284
            G T LH AA    V+V K L+   A+   +  +D Q           G     + L   
Sbjct: 66  DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 125

Query: 285 SPSM 288
              M
Sbjct: 126 QEKM 129

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 3e-08
 Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 17/139 (12%)

Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
            +  L  AA RG+VE V+ L+ +    N+ +  G  P+ +                    
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM----------------G 46

Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
            +                      R +    +         +      ++ ++  GR  +
Sbjct: 47  SARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV 106

Query: 349 HMAITGNVHLELVQLLMSA 367
            +A     H ++ + L +A
Sbjct: 107 DLAEELG-HRDVARYLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 32/120 (26%)

Query: 198 AVHAAARGGNLKILKELLEN--------------------------------CTDVLTYR 225
            +  AA  G ++ ++ LLE                                   +     
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
               +  +H AA  G ++ +  L  +   ++  D  G  P+ +A   G   V   L  A+
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.003
 Identities = 20/141 (14%), Positives = 34/141 (24%), Gaps = 22/141 (15%)

Query: 111 LLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPR 170
            L TAA+ G +  V+ LL+                         N +         +   
Sbjct: 6   WLATAAARGRVEEVRALLEAGA----------------------NPNAPNSYGRRPIQVM 43

Query: 171 FLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGS 230
            + +        +                   A          +L      L  RD  G 
Sbjct: 44  MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 103

Query: 231 TILHAAAGRGQVEVVKDLIAS 251
             +  A   G  +V + L A+
Sbjct: 104 LPVDLAEELGHRDVARYLRAA 124

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.3 bits (92), Expect = 9e-05
 Identities = 14/118 (11%), Positives = 26/118 (22%), Gaps = 18/118 (15%)

Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKL 321
            +     A   G    V+  +     +        +   ++A  G        L +   +
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 322 MKQLASGQ-----------------IFNMEDIINAKNNDGRTALHMAITGNVHLELVQ 362
                                    + +       K  DG TAL           L+Q
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN-QAIKALLQ 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 36/121 (29%)

Query: 194 MMNRAVHAAARGGNLKILKELLEN--------------------------------CTDV 221
           M ++    A + G+L  +K+ +                                      
Sbjct: 1   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 60

Query: 222 LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
           +   DK   T L +A   G V  VK L++           G T L     +     ++AL
Sbjct: 61  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQ----AIKAL 116

Query: 282 I 282
           +
Sbjct: 117 L 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	677
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.79
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.78

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-47  Score=412.05  Aligned_cols=361  Identities=25%  Similarity=0.266  Sum_probs=319.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcC
Q 005790           27 ASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAG  106 (677)
Q Consensus        27 ~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~  106 (677)
                      .||||+||..|+.++|++||++|+++|.            .+..+.||||+|+..++.+++++|++    +|++++.++.
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~------------~d~~g~TpL~~A~~~g~~~iv~~Ll~----~gadi~~~~~   64 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNV------------SNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAK   64 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCC------------SSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCT
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCC------------CCCCCCCHHHHHHHcCCHHHHHHHHH----CcCCCCCCCC
Confidence            3999999999999999999999999875            36679999999999999999999999    8999999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCc--------------------------------cccCCCCCCCHHHHHHHhcC
Q 005790          107 YGGWLLYTAASAGDLGFVKQLLDKNPLL--------------------------------VFGEGEYGVTDIFYAAARSK  154 (677)
Q Consensus       107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~--------------------------------~~~~~~~g~tpL~~AA~~~g  154 (677)
                      .|.||||+|+..|+.+++++|+...+..                                ....+..+.++++++ +..+
T Consensus        65 ~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-~~~~  143 (408)
T d1n11a_          65 DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA-AKYG  143 (408)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH-HHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHH-HHcC
Confidence            9999999999999999999999875421                                223456788899887 4779


Q ss_pred             CHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHH
Q 005790          155 NCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILH  234 (677)
Q Consensus       155 ~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~  234 (677)
                      +.+++++|+++|++++..+..+                   .+|||+|+..|+.+++++|+++|+++ +..+..|.||||
T Consensus       144 ~~~~v~~ll~~~~~~~~~~~~~-------------------~~~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~t~l~  203 (408)
T d1n11a_         144 KVRVAELLLERDAHPNAAGKNG-------------------LTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLH  203 (408)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSC-------------------CCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHH
T ss_pred             CHHHHHHHHHcCCCCCcCCCcC-------------------chHHHHHHHcCCHHHHHHHHhcCCcc-cccCCCCCCcch
Confidence            9999999999999988765543                   57999999999999999999999998 778999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHH
Q 005790          235 AAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR  314 (677)
Q Consensus       235 ~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~  314 (677)
                      +++...+.++...|+..+......+..+.||||+|+..++.+++++++..+ ...+..+..|.|||+.|+.         
T Consensus       204 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~l~~a~~---------  273 (408)
T d1n11a_         204 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQ---------  273 (408)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHH---------
T ss_pred             hhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccc-cccccccCCCCChhhhhhh---------
Confidence            999999999999999999999999999999999999999999999999887 6788889999999999999         


Q ss_pred             hhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCch
Q 005790          315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSAS  394 (677)
Q Consensus       315 L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~  394 (677)
                       .++.+++++|++.+     ++++..+..+.||||.|+..+ +.+++++|++ .|+++|.+|.+|+||||+|+..|+.+ 
T Consensus       274 -~~~~~i~~~Ll~~g-----~~~~~~~~~~~t~L~~~~~~~-~~~~~~~ll~-~g~~in~~d~~G~T~Lh~A~~~g~~~-  344 (408)
T d1n11a_         274 -EGHVPVADVLIKHG-----VMVDATTRMGYTPLHVASHYG-NIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTD-  344 (408)
T ss_dssp             -HTCHHHHHHHHHHT-----CCTTCCCSSCCCHHHHHHHSS-CSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH-
T ss_pred             -cCcHHHHHHHHHCC-----CccccccccccccchhhcccC-cceeeeeecc-ccccccccCCCCCCHHHHHHHcCCHH-
Confidence             55667777777655     458888999999999999988 9999999999 99999999999999999999999987 


Q ss_pred             HHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHH---HHHcCCCCCCCC
Q 005790          395 SDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEI---FLYTGIDVSSDG  456 (677)
Q Consensus       395 ~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~---LL~~Gad~~~~~  456 (677)
                         ++++|+++|||+|.+|.+|+||||+|+....          +++|++   |++.|++....+
T Consensus       345 ---iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~----------~~iv~~L~~~~~~~~~~~~~~  396 (408)
T d1n11a_         345 ---IVTLLLKNGASPNEVSSDGTTPLAIAKRLGY----------ISVTDVLKVVTDETSFVLVSD  396 (408)
T ss_dssp             ---HHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC----------HHHHHHHHHHCCCCSSCC---
T ss_pred             ---HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC----------HHHHHHHHHHHhccccccccc
Confidence               7999999999999999999999999988533          667765   455666665544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-44  Score=388.39  Aligned_cols=355  Identities=21%  Similarity=0.209  Sum_probs=309.9

Q ss_pred             cccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHH
Q 005790           72 EEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAA  151 (677)
Q Consensus        72 ~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~  151 (677)
                      .||||.|+..|+.+++++|++    .|++++..|..|.||||+||..|+.++|++||++|+ +++..+..|.|||++|+ 
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~----~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-di~~~~~~g~t~L~~A~-   74 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA-KVNAKAKDDQTPLHCAA-   74 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC-CSSCCCTTSCCHHHHHH-
T ss_pred             CChHHHHHHCcCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcC-CCCCCCCCCCCHHHHHH-
Confidence            389999999999999999999    899999999999999999999999999999999998 67788999999999985 


Q ss_pred             hcCCHHHHHHHHhcCCCcccccccCCcchhhh--------------hcchhhhhhhccchHHHHHHhcCCHHHHHHHHhc
Q 005790          152 RSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI--------------EEIPSVYKWEMMNRAVHAAARGGNLKILKELLEN  217 (677)
Q Consensus       152 ~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~  217 (677)
                      ..|+.+++++|++.+.++..............              ........+..+.++|+.|+..++.+++++|+++
T Consensus        75 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~  154 (408)
T d1n11a_          75 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER  154 (408)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc
Confidence            77999999999999887765443332211111              1111123345678999999999999999999999


Q ss_pred             CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCC
Q 005790          218 CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGE  297 (677)
Q Consensus       218 ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~  297 (677)
                      |+++ +..+..|.+|||+|+..|+.+++++|+++|++++..+..|.||||+++.....++...|+... ......+..+.
T Consensus       155 ~~~~-~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~  232 (408)
T d1n11a_         155 DAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGV  232 (408)
T ss_dssp             TCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCC
T ss_pred             CCCC-CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcc-ccccccCCCCC
Confidence            9998 788999999999999999999999999999999999999999999999999999999999887 55677888999


Q ss_pred             chhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCC
Q 005790          298 TFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN  377 (677)
Q Consensus       298 tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~  377 (677)
                      |||++|+..+.          .+++++++...     ..++..+..|.|||+.|+..+ +.+++++|++ .|++++..+.
T Consensus       233 t~l~~a~~~~~----------~~~~~~~~~~~-----~~~~~~~~~g~~~l~~a~~~~-~~~i~~~Ll~-~g~~~~~~~~  295 (408)
T d1n11a_         233 TPLHLAAQEGH----------AEMVALLLSKQ-----ANGNLGNKSGLTPLHLVAQEG-HVPVADVLIK-HGVMVDATTR  295 (408)
T ss_dssp             CHHHHHHHTTC----------HHHHHHHHTTT-----CCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHH-HTCCTTCCCS
T ss_pred             CHHHHHHHhCc----------HhHhhhhhccc-----cccccccCCCCChhhhhhhcC-cHHHHHHHHH-CCCccccccc
Confidence            99999999544          45555555443     447788999999999999998 9999999999 9999999999


Q ss_pred             CCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCCCC
Q 005790          378 DGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGN  457 (677)
Q Consensus       378 ~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~~  457 (677)
                      .+.||||+++..++.+    +++.+++.|+++|.+|..|+||||+|++...          .+++++||++|||++.+|.
T Consensus       296 ~~~t~L~~~~~~~~~~----~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~----------~~iv~~Ll~~GAd~n~~d~  361 (408)
T d1n11a_         296 MGYTPLHVASHYGNIK----LVKFLLQHQADVNAKTKLGYSPLHQAAQQGH----------TDIVTLLLKNGASPNEVSS  361 (408)
T ss_dssp             SCCCHHHHHHHSSCSH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----------HHHHHHHHHTTCCSCCCCS
T ss_pred             cccccchhhcccCcce----eeeeeccccccccccCCCCCCHHHHHHHcCC----------HHHHHHHHHCCCCCCCCCC
Confidence            9999999999999987    6889999999999999999999999998532          8899999999999999999


Q ss_pred             CCCCCCCC
Q 005790          458 ANSGSGGM  465 (677)
Q Consensus       458 ~g~t~~~~  465 (677)
                      .|.|+...
T Consensus       362 ~G~t~L~~  369 (408)
T d1n11a_         362 DGTTPLAI  369 (408)
T ss_dssp             SSCCHHHH
T ss_pred             CCCCHHHH
Confidence            99875543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=294.39  Aligned_cols=270  Identities=27%  Similarity=0.311  Sum_probs=235.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP  187 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~  187 (677)
                      +.|+||+|+..|++++|++||++|++.....+..|+||||+|| ..|+.+++++|++.|..+.......           
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~-~~~~~eiv~~L~~~~~~~~~~~~~~-----------   72 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV-QMSREDIVELLLRHGADPVLRKKNG-----------   72 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTTC-----------
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHH-HcCCHHHhhhhcccccccccccccc-----------
Confidence            5789999999999999999999998655556678999999985 7799999999999998776554432           


Q ss_pred             hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCC---------
Q 005790          188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST---------  258 (677)
Q Consensus       188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~---------  258 (677)
                              .++.+.|+..+..+....+++...+. ...+..+.|+|++|+..++..+++.++....+++..         
T Consensus        73 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (285)
T d1wdya_          73 --------ATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER  143 (285)
T ss_dssp             --------CCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHH
T ss_pred             --------chhhHHHhhcCCccccchhhhhcccc-cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhh
Confidence                    57999999999999999999998776 567889999999999999999999999988776654         


Q ss_pred             -CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhh
Q 005790          259 -DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDII  337 (677)
Q Consensus       259 -d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~i  337 (677)
                       +..|.||||+|++.|+.+++++|+++.+++++..+..|.++++.+......      ....+++++|++.+     +++
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~Li~~g-----a~~  212 (285)
T d1wdya_         144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD------SDVEAITHLLLDHG-----ADV  212 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT------TTHHHHHHHHHHTT-----CCS
T ss_pred             hcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccc------hHHHHHHHHHHHCC-----CCC
Confidence             345899999999999999999999987788999999999988876654332      44567888888765     458


Q ss_pred             hccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcc
Q 005790          338 NAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDY  414 (677)
Q Consensus       338 n~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~  414 (677)
                      +.++..|.||||+|+..+ +.++|++||+..|+|+|.+|.+|.||||+|++.++.+    ++++|+++|||+|+.|.
T Consensus       213 n~~~~~g~t~L~~a~~~~-~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~e----iv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         213 NVRGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK----IAELLCKRGASTDCGDL  284 (285)
T ss_dssp             SCCCTTSCCHHHHHHHTT-CHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHHSSCSCCSSC
T ss_pred             CccCCCCCCccchhhhcC-cHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCcccC
Confidence            889999999999999988 9999999998679999999999999999999999987    79999999999999874

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.6e-35  Score=292.84  Aligned_cols=243  Identities=22%  Similarity=0.194  Sum_probs=184.8

Q ss_pred             hhccchHHHHHHhcCCHHHHHHHHhcCCCc--cccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 005790          192 WEMMNRAVHAAARGGNLKILKELLENCTDV--LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA  269 (677)
Q Consensus       192 ~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~--~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A  269 (677)
                      ++.|+||||+||..|+.+++++|+++|+++  .+.++..|.||||+||..|+.+++++|+++|++++..|..|.||||+|
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA   85 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhh
Confidence            456789999999999999999999999873  367889999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHH
Q 005790          270 AYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALH  349 (677)
Q Consensus       270 ~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh  349 (677)
                      +..++.+++++|++.................. .+..........+...... ...........+.+++.+|..|.||||
T Consensus        86 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ-DCTPDTSHAPAAVDSQPNP-ENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-------------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hccCchHHHHHHHhhccchhcccchhhhhHHh-hhcccchHHHHHHHhhcch-hHHHHHHhhhcCcccccccccCccccc
Confidence            99999999999998763321111100000000 0000000000000000000 111111124456678999999999999


Q ss_pred             HHHhCCCcHHHHHHHhhCCCCCcccc-CCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhC
Q 005790          350 MAITGNVHLELVQLLMSAPSINVNVR-DNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLG  428 (677)
Q Consensus       350 ~A~~~~~~~eiv~lLL~~~Gadin~~-d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~  428 (677)
                      +|+..+ +.++|++|++ .|++++.. +..|.||||+|+..++.+    ++++|+++|+++|.+|..|+||||+|+....
T Consensus       164 ~A~~~~-~~~~v~~Ll~-~~~~~~~~~~~~g~TpL~~A~~~~~~~----~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~  237 (255)
T d1oy3d_         164 VAVIHK-DAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAAS----VLELLLKAGADPTARMYGGRTPLGSALLRPN  237 (255)
T ss_dssp             HHHHTT-CHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             cccccc-ccccccchhc-ccccccccccccccccccccccccHHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Confidence            999988 9999999999 89998865 568999999999999977    6889999999999999999999999987543


Q ss_pred             CCCCCCCccchhhHHHHHHcCCCC
Q 005790          429 NGSSPGTSFRISDTEIFLYTGIDV  452 (677)
Q Consensus       429 ~~~~~~~~~~~~~v~~LL~~Gad~  452 (677)
                                .+++++|+++||+-
T Consensus       238 ----------~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         238 ----------PILARLLRAHGAPE  251 (255)
T ss_dssp             ----------HHHHHHHHHTTCCC
T ss_pred             ----------HHHHHHHHHcCCCC
Confidence                      88999999999973

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-34  Score=281.48  Aligned_cols=220  Identities=21%  Similarity=0.309  Sum_probs=192.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP  187 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~  187 (677)
                      +.++|+.+|..|+++.|+.+|..++..++..|..|+||||+|| ..|+.+++++|++.+.++......            
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa-~~g~~e~~~~l~~~~~~~~~~~~~------------   69 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWAC-SAGHTEIVEFLLQLGVPVNDKDDA------------   69 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHH-HHTCHHHHHHHHHHTCCSCCCCTT------------
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHH-Hhhhhccccccccccccccccccc------------
Confidence            4578999999999999999999888889999999999999996 669999999999998876655433            


Q ss_pred             hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790          188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH  267 (677)
Q Consensus       188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~  267 (677)
                             +.++++.|+..++.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus        70 -------~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~  141 (223)
T d1uoha_          70 -------GWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMH  141 (223)
T ss_dssp             -------CCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             -------ccccccccccccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccch
Confidence                   257999999999999999999999998 789999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchH
Q 005790          268 IAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTA  347 (677)
Q Consensus       268 ~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~Tp  347 (677)
                      +|+..++.+++++|++.+. +                                                ++.+|..|.||
T Consensus       142 ~a~~~~~~~~~~~L~~~~~-~------------------------------------------------i~~~d~~g~Tp  172 (223)
T d1uoha_         142 RAAAKGNLKMIHILLYYKA-S------------------------------------------------TNIQDTEGNTP  172 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTTC-C------------------------------------------------SCCCCTTCCCH
T ss_pred             hhhhcCCcchhhhhccccc-e------------------------------------------------eeeccCCCCce
Confidence            9999999999999988773 2                                                55567788888


Q ss_pred             HHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHH
Q 005790          348 LHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLIS  404 (677)
Q Consensus       348 Lh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~  404 (677)
                      ||+|+..+ +.++|++||+ .|+|++.+|.+|+||||+|. .|+.+    ++++|++
T Consensus       173 L~~Aa~~g-~~~~v~~LL~-~Gad~~~~d~~g~tpl~~A~-~~~~~----i~~~Ll~  222 (223)
T d1uoha_         173 LHLACDEE-RVEEAKLLVS-QGASIYIENKEEKTPLQVAK-GGLGL----ILKRMVE  222 (223)
T ss_dssp             HHHHHHTT-CHHHHHHHHH-TTCCSCCCCTTSCCHHHHCC-TTHHH----HHHHHHC
T ss_pred             eccccccC-cHHHHHHHHH-CCCCCCCCCCCCCCHHHHHH-CCCHH----HHhcccC
Confidence            88888888 8999999998 89999999999999999874 46655    5666653

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-33  Score=284.67  Aligned_cols=275  Identities=22%  Similarity=0.236  Sum_probs=233.8

Q ss_pred             cCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhc
Q 005790           26 YASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRA  105 (677)
Q Consensus        26 g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d  105 (677)
                      +.|+||+|++.|++++|++||++|+++|..           ....+.||||+|+..++.+++++|++    .+......+
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~-----------~~~~g~tpL~~A~~~~~~eiv~~L~~----~~~~~~~~~   69 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-----------EEEGGWTPLHNAVQMSREDIVELLLR----HGADPVLRK   69 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCC-----------CTTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCC
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCcc-----------CCCCCCCHHHHHHHcCCHHHhhhhcc----ccccccccc
Confidence            459999999999999999999999998753           34578999999999999999999999    888888889


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      ..+.+|.++|+..+..+...++++... .....+..+.+++++++ ..++..+++.++....+++.......        
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------  139 (285)
T d1wdya_          70 KNGATPFLLAAIAGSVKLLKLFLSKGA-DVNECDFYGFTAFMEAA-VYGKVKALKFLYKRGANVNLRRKTKE--------  139 (285)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCBCTTCCBHHHHHH-HTTCHHHHHHHHHTTCCTTCCCCCCH--------
T ss_pred             cccchhhHHHhhcCCccccchhhhhcc-cccccccCCCchhHHHH-Hhcchhhhhhhhhhcccccccccchh--------
Confidence            999999999999999999999999875 44556788999999985 77999999999998887765443321        


Q ss_pred             chhhhhhhccchHHHHHHhcCCHHHHHHHHhc-CCCccccCCCCCCcHHHHHHHh----CCHHHHHHHHhcCCCCCCCCC
Q 005790          186 IPSVYKWEMMNRAVHAAARGGNLKILKELLEN-CTDVLTYRDKQGSTILHAAAGR----GQVEVVKDLIASFDIINSTDH  260 (677)
Q Consensus       186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~-ga~~~~~~d~~g~TpL~~A~~~----g~~eivk~Ll~~ga~in~~d~  260 (677)
                       ........|.||||+|+..|+.+++++|+++ |+++ +..+..|.++++.+...    +..+++++|+++|++++.++.
T Consensus       140 -~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~  217 (285)
T d1wdya_         140 -DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE  217 (285)
T ss_dssp             -HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT
T ss_pred             -hhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCC
Confidence             1223445678999999999999999999975 6777 77888888888776543    345789999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhcc
Q 005790          261 QGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAK  340 (677)
Q Consensus       261 ~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~  340 (677)
                      .|.||||+|+..|+.+++++||+..+.+                                                +|.+
T Consensus       218 ~g~t~L~~a~~~~~~~~v~~lL~~~g~d------------------------------------------------in~~  249 (285)
T d1wdya_         218 RGKTPLILAVEKKHLGLVQRLLEQEHIE------------------------------------------------INDT  249 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHSSSCC------------------------------------------------TTCC
T ss_pred             CCCCccchhhhcCcHHHHHHHHHcCCCC------------------------------------------------CcCC
Confidence            9999999999999999999999865343                                                5667


Q ss_pred             CCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCC
Q 005790          341 NNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN  377 (677)
Q Consensus       341 d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~  377 (677)
                      |.+|.||||+|+..+ +.++|++||+ +|||+|++|.
T Consensus       250 d~~G~TpL~~A~~~~-~~eiv~~Ll~-~GAd~n~~d~  284 (285)
T d1wdya_         250 DSDGKTALLLAVELK-LKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             CTTSCCHHHHHHHTT-CHHHHHHHHH-HSSCSCCSSC
T ss_pred             CCCCCCHHHHHHHcC-CHHHHHHHHH-CCCCCCcccC
Confidence            889999999999988 9999999999 9999999874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-33  Score=277.50  Aligned_cols=227  Identities=22%  Similarity=0.251  Sum_probs=200.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchh
Q 005790          109 GWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPS  188 (677)
Q Consensus       109 ~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~  188 (677)
                      .+|||+||..|+.++|+.||+.++..++.+|.+|.||||+|+ ..|+.+++++|+++|++++..+..+            
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~-~~g~~~iv~~Ll~~ga~~~~~~~~~------------   67 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV-SFQAHEITSFLLSKMENVNLDDYPD------------   67 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHH-HTTCHHHHHHHHTTCTTCCGGGCCC------------
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHH-HcCCccccchhhhhhcccccccccc------------
Confidence            479999999999999999999888889999999999999985 7799999999999999988665432            


Q ss_pred             hhhhhccchHHHHHHhcCCHHHHHHHHhcCCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790          189 VYKWEMMNRAVHAAARGGNLKILKELLENCTDV-LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH  267 (677)
Q Consensus       189 ~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~-~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~  267 (677)
                          ..+.+++|+|+..+..++++.++..+... ....+..+.|+|+.++..++.+++++|++.|.+++..|..|+||||
T Consensus        68 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~  143 (229)
T d1ixva_          68 ----DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH  143 (229)
T ss_dssp             ----TTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             ----ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccc
Confidence                23578999999999999999999998764 2446778899999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchH
Q 005790          268 IAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTA  347 (677)
Q Consensus       268 ~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~Tp  347 (677)
                      +|+..|+.+++++|++.++.+                                                +|.+|..|.||
T Consensus       144 ~a~~~~~~~~~~~Ll~~~~~~------------------------------------------------in~~d~~g~Tp  175 (229)
T d1ixva_         144 RAASVGSLKLIELLCGLGKSA------------------------------------------------VNWQDKQGWTP  175 (229)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCC------------------------------------------------SCCCCTTSCCH
T ss_pred             hhhhccccccccccccccccc------------------------------------------------ccccccccCCc
Confidence            999999999999999887443                                                55667889999


Q ss_pred             HHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCC
Q 005790          348 LHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI  408 (677)
Q Consensus       348 Lh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gad  408 (677)
                      ||+|+..+ +.++|++||+..|+|++.+|.+|+||||+|+..       .++++|+++|+|
T Consensus       176 Lh~A~~~~-~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~-------~~~~~Ll~~g~d  228 (229)
T d1ixva_         176 LFHALAEG-HGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE-------QVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH-------HHHHHHHHHCCC
T ss_pred             hhhhcccc-cHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH-------HHHHHHHHcCCC
Confidence            99999988 999999999746999999999999999998742       378999999987

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-33  Score=273.49  Aligned_cols=219  Identities=21%  Similarity=0.205  Sum_probs=188.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcC
Q 005790           27 ASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAG  106 (677)
Q Consensus        27 ~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~  106 (677)
                      +++|+.+|+.|+++.|+.+|+.                                                .+..++.+|.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~------------------------------------------------~~~~~~~~D~   35 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILA------------------------------------------------DKSLATRTDQ   35 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHH------------------------------------------------CGGGGGCCCT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHh------------------------------------------------CCCcCcCcCC
Confidence            4788888888888888877764                                                3445667888


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790          107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI  186 (677)
Q Consensus       107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~  186 (677)
                      .|+||||+||..|+.+++++|++.+. ........+.+++++++ ..++.+++++|+++|++++..+..           
T Consensus        36 ~G~TpLh~Aa~~g~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~~~Ll~~~~d~~~~d~~-----------  102 (223)
T d1uoha_          36 DSRTALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAA-SAGRDEIVKALLGKGAQVNAVNQN-----------  102 (223)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTC-CSCCCCTTCCCHHHHHH-HHTCHHHHHHHHHTTCCTTCCCTT-----------
T ss_pred             CCCCHHHHHHHhhhhccccccccccc-ccccccccccccccccc-cccccchhHHHhccCceeEeeCCC-----------
Confidence            99999999999999999999999886 44445667888888875 679999999999999988766554           


Q ss_pred             hhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 005790          187 PSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPL  266 (677)
Q Consensus       187 ~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL  266 (677)
                              |.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++|++.|.+++..|..|+|||
T Consensus       103 --------g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL  173 (223)
T d1uoha_         103 --------GCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPL  173 (223)
T ss_dssp             --------CCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             --------CCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCcee
Confidence                    368999999999999999999999998 78899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHc
Q 005790          267 HIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLAS  327 (677)
Q Consensus       267 ~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~  327 (677)
                      |+|+..|+.++|++|++.| ++++.+|..|+||||+|.           .++.+++++|++
T Consensus       174 ~~Aa~~g~~~~v~~LL~~G-ad~~~~d~~g~tpl~~A~-----------~~~~~i~~~Ll~  222 (223)
T d1uoha_         174 HLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQVAK-----------GGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHCC-----------TTHHHHHHHHHC
T ss_pred             ccccccCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH-----------CCCHHHHhcccC
Confidence            9999999999999999988 789999999999999985           355667777765

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.3e-33  Score=278.60  Aligned_cols=242  Identities=15%  Similarity=0.047  Sum_probs=177.2

Q ss_pred             cCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhc
Q 005790           26 YASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRA  105 (677)
Q Consensus        26 g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d  105 (677)
                      |.||||+||..|+.++|++||++|+++..-         -.....+.||||+|+..++.+++++|++    .|++++.+|
T Consensus         9 G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i---------~~~~~~g~TpL~~A~~~g~~~iv~~Ll~----~ga~i~~~d   75 (255)
T d1oy3d_           9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYL---------DLQNDLGQTALHLAAILGEASTVEKLYA----AGAGVLVAE   75 (255)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHTTSGGG---------GCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCSSCCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcccc---------cCcCCCCCCccchHHhhccccccccccc----ccccccccc
Confidence            679999999999999999999999985421         1234567899999999999999999998    899999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      ..|.||||+|+..++.+++++|++.................. . +. ........++..  ........  ........
T Consensus        76 ~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~  148 (255)
T d1oy3d_          76 RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ-D-CT-PDTSHAPAAVDS--QPNPENEE--EPRDEDWR  148 (255)
T ss_dssp             TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------CCCGG
T ss_pred             cccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHh-h-hc-ccchHHHHHHHh--hcchhHHH--HHHhhhcC
Confidence            999999999999999999999998765322111110000000 0 00 000000000000  00000000  00000001


Q ss_pred             chhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 005790          186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP  265 (677)
Q Consensus       186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp  265 (677)
                      .....++..|.||||+|+..++.++|++|++.+++.....+..|.||||+|+..|+.++|++|+++|++++.+|..|.||
T Consensus       149 ~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~  228 (255)
T d1oy3d_         149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP  228 (255)
T ss_dssp             GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            11223455678999999999999999999999999977778899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCC
Q 005790          266 LHIAAYRGQPAVVEALILASPS  287 (677)
Q Consensus       266 L~~A~~~g~~~iv~~LL~~g~~  287 (677)
                      ||+|+..++.+++++|+++|+.
T Consensus       229 L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         229 LGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999964

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.7e-33  Score=286.20  Aligned_cols=261  Identities=18%  Similarity=0.118  Sum_probs=215.7

Q ss_pred             CHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHH--------H
Q 005790          144 TDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKEL--------L  215 (677)
Q Consensus       144 tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~L--------L  215 (677)
                      ||||+++...|+.++++.|.+.+++...  .                  ..|+||||+|+..|+.++|++|        +
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~--~------------------~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l   61 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIID--P------------------RHNRTVLHWIASNSSAEKSEDLIVHEAKECI   61 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCC--C------------------SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCC--C------------------CCCccHHHHHHHcCCHHHHHHHHhcchhHHH
Confidence            7999877778999999999888765432  1                  1257999999999999888776        5


Q ss_pred             hcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCC--CCccccC
Q 005790          216 ENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASP--SMISVKN  293 (677)
Q Consensus       216 ~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~--~~~~~~~  293 (677)
                      +.|+++ +.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..++.+++++++....  ..++..+
T Consensus        62 ~~Gadv-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~  140 (277)
T d2fo1e1          62 AAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD  140 (277)
T ss_dssp             HTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCC
T ss_pred             HcCCCc-cccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccc
Confidence            679999 7899999999999999999999999999999999999999999999999999999999876431  2355677


Q ss_pred             CCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHccc---ccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCC
Q 005790          294 TSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQ---IFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSI  370 (677)
Q Consensus       294 ~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~---~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Ga  370 (677)
                      ..+.++.+.+.........       ..+..+.+..   ........+..+..|.||||+++..+ +.+++++++...+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~-~~~~~~~~l~~~~~  212 (277)
T d2fo1e1         141 RNGMTALMIVAHNEGRDQV-------ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS-NMPIVKYLVGEKGS  212 (277)
T ss_dssp             TTSCCHHHHHHHSCSTTHH-------HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSC-CHHHHHHHHHHSCC
T ss_pred             cccchhHHHHHhccccccc-------ccccccccccccccccccccccccccCCCCccccccccc-cccccccccccccc
Confidence            8888999988876543322       2222232221   12233445667889999999999988 99999987665899


Q ss_pred             CccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHH
Q 005790          371 NVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLY  447 (677)
Q Consensus       371 din~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~  447 (677)
                      +++.+|..|+||||+|+..|+.+    ++++|+++|+|+|.+|.+|+||||+|+....          .+++++|++
T Consensus       213 ~~~~~d~~g~tpL~~A~~~g~~~----iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~----------~~iv~lL~~  275 (277)
T d2fo1e1         213 NKDKQDEDGKTPIMLAAQEGRIE----VVMYLIQQGASVEAVDATDHTARQLAQANNH----------HNIVDIFDR  275 (277)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC----------HHHHHHHHT
T ss_pred             cccccCCCCCCHHHHHHHcCCHH----HHHHHHHCcCCCCCcCCCCCCHHHHHHHcCC----------HHHHHHHHH
Confidence            99999999999999999999987    7899999999999999999999999999643          889999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-32  Score=272.90  Aligned_cols=223  Identities=24%  Similarity=0.279  Sum_probs=194.8

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCC---CCCCCCcHHHHHHHc
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS---TDHQGNTPLHIAAYR  272 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~---~d~~g~tpL~~A~~~  272 (677)
                      ++|||+||..|+.++|+.|++.+....+.+|.+|+||||+|+..|+.+++++|+++|++++.   .+..|.+|+|+|+..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            47999999999999999999977655588999999999999999999999999999999864   467799999999999


Q ss_pred             CCHHHHHHHHHhCCC-CccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHH
Q 005790          273 GQPAVVEALILASPS-MISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMA  351 (677)
Q Consensus       273 g~~~iv~~LL~~g~~-~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A  351 (677)
                      +..++++.++..+.. .....+..+.|+++.++..          ++.+++.+|+..+     ...+.+|..|+||||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~l~~~~-----~~~~~~~~~g~t~l~~a  145 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK----------KWFEVSQFLIENG-----ASVRIKDKFNQIPLHRA  145 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHT----------TCHHHHHHHHHTT-----CCSCCCCTTSCCHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccc----------chhhhhhhhhhhc-----ccccccCCCCCCccchh
Confidence            999999999887632 3455677899999999984          4556667776655     34677899999999999


Q ss_pred             HhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHH-cCCCCCCCcccCCchHHHHHHHhCCC
Q 005790          352 ITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLIS-AGGIFGCQDYSARRAIASHIKMLGNG  430 (677)
Q Consensus       352 ~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~-~Gadin~~d~~G~T~L~~al~~~~~~  430 (677)
                      +..+ +.+++++|++..+.++|.+|..|+||||+|+..++.+    ++++|++ .|+|++.+|..|+|||++|++     
T Consensus       146 ~~~~-~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~----~v~~Ll~~~gad~~~~d~~g~t~l~~A~~-----  215 (229)
T d1ixva_         146 ASVG-SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD----AAVLLVEKYGAEYDLVDNKGAKAEDVALN-----  215 (229)
T ss_dssp             HHHT-CHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHHHCCCSCCCCTTSCCTGGGCSC-----
T ss_pred             hhcc-cccccccccccccccccccccccCCchhhhcccccHH----HHHHHHHhcCCCCCCcCCCCCCHHHHHhh-----
Confidence            9998 9999999999444899999999999999999999987    6888886 599999999999999998764     


Q ss_pred             CCCCCccchhhHHHHHHcCCC
Q 005790          431 SSPGTSFRISDTEIFLYTGID  451 (677)
Q Consensus       431 ~~~~~~~~~~~v~~LL~~Gad  451 (677)
                              .+++++|+++|||
T Consensus       216 --------~~~~~~Ll~~g~d  228 (229)
T d1ixva_         216 --------EQVKKFFLNNVVD  228 (229)
T ss_dssp             --------HHHHHHHHHHCCC
T ss_pred             --------HHHHHHHHHcCCC
Confidence                    4689999999997

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=7.6e-32  Score=276.61  Aligned_cols=230  Identities=25%  Similarity=0.246  Sum_probs=196.9

Q ss_pred             cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 005790          195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ  274 (677)
Q Consensus       195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~  274 (677)
                      +.|+|+.||..|+.++|++||++|+++ +..|..|+||||+|+..|+.++|++|+++|++.+..+..+.+||++|+..++
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            458999999999999999999999998 8899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHH-----------------HHHHHHHHcccccchhhhh
Q 005790          275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQ-----------------VKLMKQLASGQIFNMEDII  337 (677)
Q Consensus       275 ~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~-----------------~eiv~~Ll~~~~~~~~~~i  337 (677)
                      .++++.|++++ ...+..+..+.+++++|+..+..+.+..+...                 ......+....     ...
T Consensus       119 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  192 (291)
T d1s70b_         119 LDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH-----IND  192 (291)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC-----CCC
T ss_pred             cchhhcccccC-cccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccc-----ccc
Confidence            99999999998 66888999999999999987666555554211                 11111111111     113


Q ss_pred             hccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCC
Q 005790          338 NAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSAR  417 (677)
Q Consensus       338 n~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~  417 (677)
                      ...+..|.||||+|+..+ +.+++++|++ .|+|+|.++..|+||||+|+..|+.+    ++++|+++|||+|.+|..|+
T Consensus       193 ~~~~~~g~t~L~~a~~~~-~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g~~~----iv~lLl~~Gadv~~~d~~G~  266 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAKG-YTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEE----ACRILVENLCDMEAVNKVGQ  266 (291)
T ss_dssp             CCCTTTCCCHHHHHHHHT-CHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccCCCCChhhHHHHcC-Chhhhccccc-ceecccccccCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCC
Confidence            445778999999999988 9999999999 99999999999999999999999987    68999999999999999999


Q ss_pred             chHHHHHHHhCCCCCCCCccchhhHHHHHHcCCC
Q 005790          418 RAIASHIKMLGNGSSPGTSFRISDTEIFLYTGID  451 (677)
Q Consensus       418 T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad  451 (677)
                      ||||+|.+              +++++|.+.+..
T Consensus       267 TaL~~A~e--------------~~~~~L~~~~~~  286 (291)
T d1s70b_         267 TAFDVADE--------------DILGYLEELQKK  286 (291)
T ss_dssp             CTTTSCCS--------------GGGHHHHHHHHH
T ss_pred             CHHHHHHH--------------HHHHHHHHHhhh
Confidence            99998743              377787765543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=6.6e-32  Score=274.44  Aligned_cols=223  Identities=17%  Similarity=0.196  Sum_probs=172.4

Q ss_pred             CCCCHHHHHHHhcCCHHHHHH--------HHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHH
Q 005790          141 YGVTDIFYAAARSKNCDVFRL--------IYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILK  212 (677)
Q Consensus       141 ~g~tpL~~AA~~~g~~evv~l--------Ll~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk  212 (677)
                      +|.||||+|| ..|+.++|++        +++.|+|+|..+..|                   +||||+|+..|+.++|+
T Consensus        32 ~g~T~Lh~A~-~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G-------------------~TpLh~A~~~g~~~iv~   91 (277)
T d2fo1e1          32 HNRTVLHWIA-SNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE-------------------NTPLMLAVLARRRRLVA   91 (277)
T ss_dssp             SCCCHHHHHH-CTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS-------------------CCHHHHHHHHTCHHHHH
T ss_pred             CCccHHHHHH-HcCCHHHHHHHHhcchhHHHHcCCCccccCCCC-------------------Ceeeccccccccccccc
Confidence            3455555543 4445444444        467889988776553                   78999999999999999


Q ss_pred             HHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcC---CCCCCCCCCCCcHHHHHHHcCCHH---HHHHHHHhCC
Q 005790          213 ELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASF---DIINSTDHQGNTPLHIAAYRGQPA---VVEALILASP  286 (677)
Q Consensus       213 ~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~g---a~in~~d~~g~tpL~~A~~~g~~~---iv~~LL~~g~  286 (677)
                      +|+++|+++ +.++..|.|||++|+..++.+++++++..+   ..++..+..+.++.+.+...+..+   .+..+.+...
T Consensus        92 ~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (277)
T d2fo1e1          92 YLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA  170 (277)
T ss_dssp             HHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTC
T ss_pred             ccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccc
Confidence            999999998 778999999999999999999999888754   357777888899999998877544   4444444432


Q ss_pred             C-------CccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHH
Q 005790          287 S-------MISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLE  359 (677)
Q Consensus       287 ~-------~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~e  359 (677)
                      .       ..+..+..|.||||+++..++.          +++.+++...    +.+++.+|..|.||||+|+..+ +.+
T Consensus       171 ~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~----------~~~~~~l~~~----~~~~~~~d~~g~tpL~~A~~~g-~~~  235 (277)
T d2fo1e1         171 KVDYDGAARKDSEKYKGRTALHYAAQVSNM----------PIVKYLVGEK----GSNKDKQDEDGKTPIMLAAQEG-RIE  235 (277)
T ss_dssp             CSSCCSGGGTSSSSCCCCCTHHHHHSSCCH----------HHHHHHHHHS----CCCTTCCCTTCCCHHHHHHHHT-CHH
T ss_pred             cccccccccccccccCCCCccccccccccc----------cccccccccc----cccccccCCCCCCHHHHHHHcC-CHH
Confidence            1       1345667899999999996544          4444433322    2347888999999999999998 999


Q ss_pred             HHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHH
Q 005790          360 LVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLIS  404 (677)
Q Consensus       360 iv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~  404 (677)
                      +|++|++ .|+|+|.+|.+|+||||+|+..|+.+    ++++|++
T Consensus       236 iv~~Ll~-~gadin~~d~~G~T~L~~A~~~~~~~----iv~lL~~  275 (277)
T d2fo1e1         236 VVMYLIQ-QGASVEAVDATDHTARQLAQANNHHN----IVDIFDR  275 (277)
T ss_dssp             HHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHH----HHHHHHT
T ss_pred             HHHHHHH-CcCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHH
Confidence            9999999 99999999999999999999999988    5666654

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=9.8e-30  Score=260.71  Aligned_cols=235  Identities=23%  Similarity=0.157  Sum_probs=193.7

Q ss_pred             ccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhh
Q 005790           25 WYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIR  104 (677)
Q Consensus        25 ~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~  104 (677)
                      .+.|||++||+.|++++|++||++|+++|.            .+.++.||||+|+..++.+++++|++    +|.+....
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~------------~d~~G~T~L~~A~~~g~~eiv~~Ll~----~~~~~~~~  102 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINY------------ANVDGLTALHQACIDDNVDMVKFLVE----NGANINQP  102 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTC------------BCTTCCBHHHHHHHTTCHHHHHHHHH----TTCCTTCC
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCc------------cCCCCCcHHHHHHhcCCceeeeeecc----cccccccc
Confidence            456999999999999999999999999874            36678999999999999999999998    88888888


Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcC-CCcccccccCCcchhhh
Q 005790          105 AGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFA-VSPRFLTAKGGELEEHI  183 (677)
Q Consensus       105 d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~G-ad~~~~~~~~~~~~~~~  183 (677)
                      +..+.+||++|+..++.++++.|++.+. .....+..+.+++++|+ ..+..++++.|++.. .++......        
T Consensus       103 ~~~~~~~L~~a~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~--------  172 (291)
T d1s70b_         103 DNEGWIPLHAAASCGYLDIAEYLISQGA-HVGAVNSEGDTPLDIAE-EEAMEELLQNEVNRQGVDIEAARKE--------  172 (291)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHCC-SHHHHHHHHHHHHHHTCCHHHHHHH--------
T ss_pred             cccccccccccccccccchhhcccccCc-ccccccccCcccccccc-ccccchhcccccccccccccccccc--------
Confidence            8899999999999999999999999886 45667888999999984 668888888888643 222111000        


Q ss_pred             hcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC
Q 005790          184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN  263 (677)
Q Consensus       184 ~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~  263 (677)
                                 ...+.       .......+.....+. ...+..|.||||+|+..|+.+++++|+++|++++..+..|+
T Consensus       173 -----------~~~~~-------~~~~~~~~~~~~~~~-~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~  233 (291)
T d1s70b_         173 -----------EERIM-------LRDARQWLNSGHIND-VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW  233 (291)
T ss_dssp             -----------HHHHH-------HHHHHHHHHHTCCCC-CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCC
T ss_pred             -----------ccccc-------cccchhhhccccccc-ccccCCCCChhhHHHHcCChhhhcccccceecccccccCCC
Confidence                       01111       122333344444443 56788999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790          264 TPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS  305 (677)
Q Consensus       264 tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~  305 (677)
                      ||||+|+..|+.++|++|+++| ++++.+|..|.||||+|++
T Consensus       234 TpL~~A~~~g~~~iv~lLl~~G-adv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         234 TPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCS
T ss_pred             CHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHH
Confidence            9999999999999999999998 6799999999999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.3e-28  Score=236.55  Aligned_cols=219  Identities=21%  Similarity=0.185  Sum_probs=189.5

Q ss_pred             cCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhc
Q 005790           26 YASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRA  105 (677)
Q Consensus        26 g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d  105 (677)
                      |.||||+||..|+.++|++|++.                                         +.+    .|++++.+|
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~-----------------------------------------~~~----~g~~in~~d   37 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNL-----------------------------------------FQQ----GGRELDIYN   37 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHH-----------------------------------------HHH----TTCCSCCCC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHH-----------------------------------------HHH----CCCCCCccC
Confidence            77999999999999999999863                                         222    778888999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790          106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE  185 (677)
Q Consensus       106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~  185 (677)
                      ..|.||||+|+..|+.++|++|+++++ ..+.....|.++++.|. ..++.++++.+.............          
T Consensus        38 ~~g~TpL~~A~~~~~~~iv~~Ll~~ga-~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~----------  105 (228)
T d1k1aa_          38 NLRQTPLHLAVITTLPSVVRLLVTAGA-SPMALDRHGQTAAHLAC-EHRSPTCLRALLDSAAPGTLDLEA----------  105 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHSCTTSCCTTC----------
T ss_pred             CCCCccceehhcccccccccccccccc-ccccccccccccccccc-ccccccchhhhhhccccccccccc----------
Confidence            999999999999999999999999987 45567788899999984 778999999888865433221111          


Q ss_pred             chhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 005790          186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP  265 (677)
Q Consensus       186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp  265 (677)
                           ......++|+.+.........+.|.....+........+.++|+.|+..+...+++.++++|.+++..|..|.||
T Consensus       106 -----~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~  180 (228)
T d1k1aa_         106 -----RNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA  180 (228)
T ss_dssp             -----CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBH
T ss_pred             -----cccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcch
Confidence                 112236899999999999999999999988777788899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcC
Q 005790          266 LHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF  307 (677)
Q Consensus       266 L~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~  307 (677)
                      ||+|+..|+.+++++|+++| ++++.+|.+|.||||+|+..+
T Consensus       181 L~~A~~~g~~~~v~~Ll~~G-ad~n~~d~~G~TpL~~A~~~~  221 (228)
T d1k1aa_         181 LHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRR  221 (228)
T ss_dssp             HHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHH
T ss_pred             HHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhCC
Confidence            99999999999999999998 679999999999999999843

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.6e-28  Score=234.96  Aligned_cols=212  Identities=24%  Similarity=0.270  Sum_probs=180.5

Q ss_pred             ccchHHHHHHhcCCHHHHHHHHh----cCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 005790          194 MMNRAVHAAARGGNLKILKELLE----NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA  269 (677)
Q Consensus       194 ~~~t~Lh~A~~~g~~eivk~LL~----~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A  269 (677)
                      .|+||||+||..|+.++|+.|++    .|+++ +.+|..|+||||+|+..|+.+++++|+++|++++..+..|.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            47899999999999999998875    88898 88999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhCC---CCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCch
Q 005790          270 AYRGQPAVVEALILASP---SMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRT  346 (677)
Q Consensus       270 ~~~g~~~iv~~LL~~g~---~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~T  346 (677)
                      ...++.++++.+.....   ...+.......++|+.+.....          ......|.....    ......+..|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~l~~~~~----~~~~~~~~~~~~  146 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC----------QETVQLLLERGA----DIDAVDIKSGRS  146 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC----------HHHHHHHHHTTC----CTTCCCTTTCCC
T ss_pred             cccccccchhhhhhcccccccccccccccccccccccccccc----------chhhhhhhcccc----ccccccccchhh
Confidence            99999999998887542   2234455667889988887433          333344443321    113345668999


Q ss_pred             HHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHH
Q 005790          347 ALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKM  426 (677)
Q Consensus       347 pLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~  426 (677)
                      +|+.|+..+ ...+++.+++ .|.+++.+|..|.||||+|+..|+.+    ++++|+++|+|+|.+|..|+||||+|+..
T Consensus       147 ~l~~a~~~~-~~~~~~~~~~-~~~~~~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         147 PLIHAVENN-SLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             HHHHHHHTT-CHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred             HHHHHHHhh-hhhhhhhhhh-hccccccccccCcchHHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHhC
Confidence            999999988 9999999999 99999999999999999999999987    68999999999999999999999998753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.8e-29  Score=244.50  Aligned_cols=203  Identities=15%  Similarity=0.048  Sum_probs=175.4

Q ss_pred             cccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHH
Q 005790           70 DDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYA  149 (677)
Q Consensus        70 ~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~A  149 (677)
                      +|.||||+|+..++.+++..|++.....++++|.+|.+|.||||+||..|+.+++++|++.|+ +++..+..|.|||+++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~-d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-DPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-CSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccc-cccccccccccccccc
Confidence            488999999999998777777776666899999999999999999999999999999999997 5677899999999998


Q ss_pred             HHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCC
Q 005790          150 AARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQG  229 (677)
Q Consensus       150 A~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g  229 (677)
                      + ..++.+++++|++.+.........             ......+.||||.|+..++.+++++|+..|+.++...+..|
T Consensus        80 ~-~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G  145 (221)
T d1iknd_          80 C-EQGCLASVGVLTQSCTTPHLHSIL-------------KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG  145 (221)
T ss_dssp             H-HHTCHHHHHHHHHSTTTTSSSCGG-------------GCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTC
T ss_pred             c-ccccccccchhhhhcccccccccc-------------cccccccchhhhHHhhcCChhheeeecccCcccccccccCC
Confidence            5 669999999999998765433221             11223357999999999999999999999999966677889


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Q 005790          230 STILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPS  287 (677)
Q Consensus       230 ~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~  287 (677)
                      .||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++.+++++|++....
T Consensus       146 ~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         146 RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             CCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            9999999999999999999999999999999999999999999999999999987643

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=6.9e-28  Score=234.27  Aligned_cols=207  Identities=25%  Similarity=0.260  Sum_probs=180.7

Q ss_pred             HHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Q 005790          208 LKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPS  287 (677)
Q Consensus       208 ~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~  287 (677)
                      .|+|++||++|++++...|.+|.||||+||..|+.+++++|+++|++++..+..+.++++.++..++.............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            48999999999998444689999999999999999999999999999999999999999999999999988888776655


Q ss_pred             CccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhC
Q 005790          288 MISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSA  367 (677)
Q Consensus       288 ~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~  367 (677)
                      ........+.++.+.+.....          ..+.+.|...     +.+++.++..|.|||++++..+ ..++++.|++ 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~L~~~-----~~~~~~~~~~~~t~l~~~~~~~-~~~~~~~l~~-  144 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAI----------EGMVEDLITA-----DADINAADNSGKTALHWAAAVN-NTEAVNILLM-  144 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTC----------TTHHHHHHHT-----TCCTTCBCTTSCBHHHHHHHTT-CHHHHHHHHH-
T ss_pred             ccccccccccccccccccccc----------hhhhhhhhhh-----cccccccCCCCCCcchhhcccC-cceeeeeecc-
Confidence            566667778888888777443          3334444443     3457889999999999999988 9999999999 


Q ss_pred             CCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHH
Q 005790          368 PSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIF  445 (677)
Q Consensus       368 ~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~L  445 (677)
                      .++++|..|..|.||||+|+..|+.+    ++++|+++|+|++.+|..|+||||+|++...          .++|++|
T Consensus       145 ~~~~~~~~d~~g~TpL~~A~~~g~~~----~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~----------~~iv~lL  208 (209)
T d1ot8a_         145 HHANRDAQDDKDETPLFLAAREGSYE----ASKALLDNFANREITDHMDRLPRDVASERLH----------HDIVRLL  208 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----------HHHHHHH
T ss_pred             ccccccccccccccccchhccccHHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC----------HHHHhhc
Confidence            89999999999999999999999987    6899999999999999999999999999643          7899876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-28  Score=242.60  Aligned_cols=197  Identities=22%  Similarity=0.273  Sum_probs=151.9

Q ss_pred             cchHHHHHHhcCCH----HHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 005790          195 MNRAVHAAARGGNL----KILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAA  270 (677)
Q Consensus       195 ~~t~Lh~A~~~g~~----eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~  270 (677)
                      |.||||+|+..|+.    ++++.++..|+++ +.+|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            67999999999985    5666777788888 788999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHH
Q 005790          271 YRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM  350 (677)
Q Consensus       271 ~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~  350 (677)
                      ..++.++++.|++.+... ...                                          ...+.....|.||||.
T Consensus        81 ~~~~~~~~~~l~~~~~~~-~~~------------------------------------------~~~~~~~~~~~t~l~~  117 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTP-HLH------------------------------------------SILKATNYNGHTCLHL  117 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTT-SSS------------------------------------------CGGGCCCTTCCCHHHH
T ss_pred             ccccccccchhhhhcccc-ccc------------------------------------------ccccccccccchhhhH
Confidence            999999999999876321 100                                          0123345567788888


Q ss_pred             HHhCCCcHHHHHHHhhCCCCCccccC-CCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCC
Q 005790          351 AITGNVHLELVQLLMSAPSINVNVRD-NDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGN  429 (677)
Q Consensus       351 A~~~~~~~eiv~lLL~~~Gadin~~d-~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~  429 (677)
                      |+..+ +.+++++|+. .|++++..+ .+|.||||+|+..|+.+    ++++|+++|+|+|.+|..|+||||+|+.... 
T Consensus       118 a~~~~-~~~~~~~l~~-~~~~~~~~~~~~G~T~L~~A~~~g~~~----~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~-  190 (221)
T d1iknd_         118 ASIHG-YLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPD----LVSLLLKCGADVNRVTYQGYSPYQLTWGRPS-  190 (221)
T ss_dssp             HHHTT-CHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC-
T ss_pred             HhhcC-Chhheeeecc-cCcccccccccCCCCccccccccccHH----HHHHHHhcCCcccccCCCCCCHHHHHHHCCC-
Confidence            88777 7888888887 777777664 46788888888888776    5777778888888888888888877655322 


Q ss_pred             CCCCCCccchhhHHHHHHcCCC
Q 005790          430 GSSPGTSFRISDTEIFLYTGID  451 (677)
Q Consensus       430 ~~~~~~~~~~~~v~~LL~~Gad  451 (677)
                               .+++++|++.+.+
T Consensus       191 ---------~~~~~~l~~~~~~  203 (221)
T d1iknd_         191 ---------TRIQQQLGQLTLE  203 (221)
T ss_dssp             ---------HHHHHHHHTTSCG
T ss_pred             ---------HHHHHHHHHcCCc
Confidence                     6778888877765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=6.7e-27  Score=227.24  Aligned_cols=207  Identities=22%  Similarity=0.191  Sum_probs=168.5

Q ss_pred             HHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHc
Q 005790           39 YDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASA  118 (677)
Q Consensus        39 ~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~  118 (677)
                      .|+|++||++|+++|..           .+.+|.||||+|+..|+.+++++|++    .|++++.++..+.++++.++..
T Consensus         2 ~~~v~~Ll~~g~din~~-----------~d~~G~t~L~~A~~~g~~e~v~~Ll~----~g~~~n~~~~~~~~~~~~~~~~   66 (209)
T d1ot8a_           2 AQVISDLLAQGAELNAT-----------MDKTGETSLHLAARFARADAAKRLLD----AGADANSQDNTGRTPLHAAVAA   66 (209)
T ss_dssp             HHHHHHHHHHHHHHHHH-----------HHHHCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHCCCCcCcC-----------cCCCCCCHHHHHHHcCCHHHHHHHHh----hccccccccccccccccccccc
Confidence            47899999999988643           24568888888888888888888888    8888888888888888888888


Q ss_pred             CCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchH
Q 005790          119 GDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRA  198 (677)
Q Consensus       119 g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  198 (677)
                      ++.....................+.++.+.+ .......+.++|++++++++..+..                   |.||
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~~~~~~~~~~-------------------~~t~  126 (209)
T d1ot8a_          67 DAMGVFQILLRNRATNLNARMHDGTTPLILA-ARLAIEGMVEDLITADADINAADNS-------------------GKTA  126 (209)
T ss_dssp             TCHHHHHHHHTCTTCCTTCCCTTCCCHHHHH-HHTTCTTHHHHHHHTTCCTTCBCTT-------------------SCBH
T ss_pred             ccccccccccccccccccccccccccccccc-ccccchhhhhhhhhhcccccccCCC-------------------CCCc
Confidence            8888887777766655555566677766655 5667888888888888877765443                   3678


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 005790          199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVV  278 (677)
Q Consensus       199 Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv  278 (677)
                      |++|+..+..++++.|++.+.++ +..|..|.||||+|+..|+.++|++|+++|++++..|..|+||||+|++.|+.++|
T Consensus       127 l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv  205 (209)
T d1ot8a_         127 LHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIV  205 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             chhhcccCcceeeeeeccccccc-cccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            88888888888888888888887 77888888888888888888888888888888888888888888888888888888


Q ss_pred             HHH
Q 005790          279 EAL  281 (677)
Q Consensus       279 ~~L  281 (677)
                      ++|
T Consensus       206 ~lL  208 (209)
T d1ot8a_         206 RLL  208 (209)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=4.2e-28  Score=255.82  Aligned_cols=248  Identities=15%  Similarity=0.029  Sum_probs=172.4

Q ss_pred             CchhhcCCCChHHHHHHHcCCHHHHHH---HHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccC
Q 005790          100 NSLIRAGYGGWLLYTAASAGDLGFVKQ---LLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKG  176 (677)
Q Consensus       100 ~~~~~d~~G~t~L~~Aa~~g~~eivk~---LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~  176 (677)
                      +++.++..|.||||+||..|+.+++++   |++.|+ +++..+..|+||||+|| +.|+.++|++|+++|++++..+.  
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~-~in~~~~~g~taL~~Aa-~~G~~~~v~~Ll~~g~~~~~~~~--  157 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDE-IVKVIQAENYQAFRLAA-ENGHLHVLNRLCELAPTEIMAMI--  157 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCS-SCC--CHHHHHHHHHHH-HTTCHHHHHHHHHSCTTTHHHHH--
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCC-cccccCCCCCCHHHHHH-HCCCHHHHHHHHHcCCCcccccc--
Confidence            445778899999999999999888776   677776 67778899999999995 78999999999999998875432  


Q ss_pred             CcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCcc--ccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 005790          177 GELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVL--TYRDKQGSTILHAAAGRGQVEVVKDLIASFDI  254 (677)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~--~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~  254 (677)
                                     ...|.||||+|+..|+.++|++|++.|++..  +..+..+.||||.|+.+|+.++|++|+++|++
T Consensus       158 ---------------~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         158 ---------------QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             ---------------SHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             ---------------ccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence                           1235799999999999999999999998652  23445677888999999999999999999987


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchh
Q 005790          255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNME  334 (677)
Q Consensus       255 in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~  334 (677)
                      ++       ++++.+...++..+..+++.....     ...+.++++.+...+..+....                    
T Consensus       223 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~a~~~~~~~~~~~--------------------  270 (346)
T d2ajaa1         223 LA-------YAEIHEFEYGEKYVNPFIARHVNR-----LKEMHDAFKLSNPDGVFDLVTK--------------------  270 (346)
T ss_dssp             HH-------HHHHCTTTTTTTTHHHHHHHHHHH-----HHHHHTTTTTTSSSSCCCCSSH--------------------
T ss_pred             cc-------hHHHHHHHcCcHhhhHHHHHhhcc-----chHHHHHHHHhcccccHhHHhc--------------------
Confidence            65       344455555555555554432210     0111223333332221111000                    


Q ss_pred             hhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCC-----ccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHc
Q 005790          335 DIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSIN-----VNVRDNDGMTTLDLLKQRPQSASSDILIRHLISA  405 (677)
Q Consensus       335 ~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gad-----in~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~  405 (677)
                       ........+.++|+.|+..+ +.+++++|++ .+..     .+..+.+|.||||+|++.|+.+    ++++|++.
T Consensus       271 -~~~~~~~~~~~~l~~a~~~~-~ld~v~~Ll~-~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e----~v~lLL~~  339 (346)
T d2ajaa1         271 -SECLQGFYMLRNLIRRNDEV-LLDDIRFLLS-IPGIKALAPTATIPGDANELLRLALRLGNQG----ACALLLSI  339 (346)
T ss_dssp             -HHHHHHHHHHHHHHHHCCGG-GHHHHHHHHT-STTTGGGSSCCSSTTCCCHHHHHHHHHTCTT----HHHHHTTS
T ss_pred             -ccccccchhhhHHHHHhcCC-hHHHHHHHHh-CcChhhhcccccCCCCCCcHHHHHHHcCcHH----HHHHHhCC
Confidence             01111223458899998877 8999999998 5653     3344567889999999999988    46666654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.1e-25  Score=204.41  Aligned_cols=154  Identities=26%  Similarity=0.379  Sum_probs=127.3

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 005790          197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPA  276 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~  276 (677)
                      ++||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+ .|+.+++++|+++|++++..+..|.++|+.++..++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            6899999999999999999999998 788899999998776 68899999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCC
Q 005790          277 VVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNV  356 (677)
Q Consensus       277 iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~  356 (677)
                      +++.|+..+. .                                                ++..+..|.+|||+|+..+ 
T Consensus        81 ~~~~l~~~~~-~------------------------------------------------~~~~~~~~~~~l~~a~~~~-  110 (156)
T d1ihba_          81 TLQTLLEFQA-D------------------------------------------------VNIEDNEGNLPLHLAAKEG-  110 (156)
T ss_dssp             HHHHHHHTTC-C------------------------------------------------TTCCCTTSCCHHHHHHHTT-
T ss_pred             cccccccccc-c------------------------------------------------ccccccccccccccccccc-
Confidence            9999888773 2                                                4445677788888888877 


Q ss_pred             cHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcC
Q 005790          357 HLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAG  406 (677)
Q Consensus       357 ~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~G  406 (677)
                      +.+++++|++..+.+++.+|..|+||||+|+..++.+    ++++|+++|
T Consensus       111 ~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~----iv~~Ll~~G  156 (156)
T d1ihba_         111 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE----VVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTC
T ss_pred             cccccccccccccccccccCCCCCCHHHHHHHcCCHH----HHHHHHhcC
Confidence            8888888887434478888888888888888888876    577777776

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-24  Score=201.73  Aligned_cols=153  Identities=29%  Similarity=0.374  Sum_probs=141.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhh
Q 005790          110 WLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSV  189 (677)
Q Consensus       110 t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~  189 (677)
                      +|||+||..|++++|++|+++|+ +++..|..|.||||+| + .|+.+++++|+++|++++..+..+             
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~-d~n~~d~~g~TpL~~A-~-~~~~ei~~~Ll~~~a~~~~~~~~~-------------   66 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVM-K-LGNPEIARRLLLRGANPDLKDRTG-------------   66 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC-CTTCCCTTSCCHHHHC-C-SSCHHHHHHHHHTTCCTTCCCTTS-------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC-CcCccCCccccccccc-c-cccccccccccccccccccccccC-------------
Confidence            89999999999999999999997 5688899999999976 3 589999999999999988665543             


Q ss_pred             hhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCC-CCCCCCCCCCcHHHH
Q 005790          190 YKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD-IINSTDHQGNTPLHI  268 (677)
Q Consensus       190 ~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga-~in~~d~~g~tpL~~  268 (677)
                            .++|+.++..++.++++.|++.+.++ +..+..|.+|||+|+..++.+++++|+++|+ +++.+|..|.||||+
T Consensus        67 ------~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~  139 (156)
T d1ihba_          67 ------FAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL  139 (156)
T ss_dssp             ------CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             ------cccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHH
Confidence                  68999999999999999999999998 7889999999999999999999999999887 789999999999999


Q ss_pred             HHHcCCHHHHHHHHHhC
Q 005790          269 AAYRGQPAVVEALILAS  285 (677)
Q Consensus       269 A~~~g~~~iv~~LL~~g  285 (677)
                      |++.++.+++++|+++|
T Consensus       140 A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         140 ARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHTTCHHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHhcC
Confidence            99999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.8e-25  Score=202.38  Aligned_cols=153  Identities=29%  Similarity=0.321  Sum_probs=140.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchh
Q 005790          109 GWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPS  188 (677)
Q Consensus       109 ~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~  188 (677)
                      ...|+.||..|++++|++||+.+..+++..|..|+||||+|+ . |+.+++++|++++++++.....             
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~-~~~~~v~~Ll~~~~~~~~~~~~-------------   67 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-F-GSTAIALELLKQGASPNVQDTS-------------   67 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-T-TCHHHHHHHHHTTCCTTCCCTT-------------
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-c-cccccccccccccccccccccc-------------
Confidence            457999999999999999999877788899999999999874 4 8999999999999998866544             


Q ss_pred             hhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 005790          189 VYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHI  268 (677)
Q Consensus       189 ~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~  268 (677)
                            +.+||+.|+..++.+++++++++|+++ +.+|..|.||||+|+..|+.+++++|+ .|++++.+|..|+||||+
T Consensus        68 ------~~~~l~~~~~~~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~  139 (156)
T d1bd8a_          68 ------GTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLEL  139 (156)
T ss_dssp             ------SCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHH
T ss_pred             ------ccccccccccccccccccccccccccc-ccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHH
Confidence                  368999999999999999999999998 778999999999999999999999887 789999999999999999


Q ss_pred             HHHcCCHHHHHHHHHh
Q 005790          269 AAYRGQPAVVEALILA  284 (677)
Q Consensus       269 A~~~g~~~iv~~LL~~  284 (677)
                      |+..|+.+++++|+++
T Consensus       140 A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         140 ALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHSCCHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHhh
Confidence            9999999999999975

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=1.7e-26  Score=243.32  Aligned_cols=230  Identities=14%  Similarity=0.031  Sum_probs=166.7

Q ss_pred             cCcHHHHHHHcCCHHHHHH---HHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCch
Q 005790           26 YASPIDWAAANGHYDLVRE---LLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSL  102 (677)
Q Consensus        26 g~TpL~~Aa~~G~~diV~~---LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~  102 (677)
                      |.||||+||++||.++|++   |++.|+++|..            ...+.||||+|++.|+.+++++|++    .|++++
T Consensus        90 ~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~------------~~~g~taL~~Aa~~G~~~~v~~Ll~----~g~~~~  153 (346)
T d2ajaa1          90 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVI------------QAENYQAFRLAAENGHLHVLNRLCE----LAPTEI  153 (346)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--------------CHHHHHHHHHHHHTTCHHHHHHHHH----SCTTTH
T ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHhCCCccccc------------CCCCCCHHHHHHHCCCHHHHHHHHH----cCCCcc
Confidence            6699999999999887765   78999998753            4568899999999999999999999    899998


Q ss_pred             hhc--CCCChHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCc
Q 005790          103 IRA--GYGGWLLYTAASAGDLGFVKQLLDKNPLLV--FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGE  178 (677)
Q Consensus       103 ~~d--~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~--~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~  178 (677)
                      ..+  ..|.||||+||..|+.++|++|++.++...  +..+..+.|| +++|+.+|+.++|++|+++|++++........
T Consensus       154 ~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~-l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~  232 (346)
T d2ajaa1         154 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF-RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE  232 (346)
T ss_dssp             HHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHH-HHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTT
T ss_pred             ccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcch-hhHHhhcCHHHHHHHHHhCCCCcchHHHHHHH
Confidence            876  358999999999999999999999987432  2233344454 44456889999999999999877643322111


Q ss_pred             chhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCcc-ccCC-------CCCCcHHHHHHHhCCHHHHHHHHh
Q 005790          179 LEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVL-TYRD-------KQGSTILHAAAGRGQVEVVKDLIA  250 (677)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~-~~~d-------~~g~TpL~~A~~~g~~eivk~Ll~  250 (677)
                                  ......++++.+...+..++...+.....+.. +..+       ..+.++|+.|+..++.+++++|++
T Consensus       233 ------------~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~  300 (346)
T d2ajaa1         233 ------------YGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS  300 (346)
T ss_dssp             ------------TTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHT
T ss_pred             ------------cCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHh
Confidence                        01112355666665555555444444333210 1111       123478888999999999999998


Q ss_pred             cCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005790          251 SFDI-----INSTDHQGNTPLHIAAYRGQPAVVEALILA  284 (677)
Q Consensus       251 ~ga~-----in~~d~~g~tpL~~A~~~g~~~iv~~LL~~  284 (677)
                      .+..     .+..+.+|+||||+|++.|+.++|++||+.
T Consensus       301 ~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         301 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             STTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             CcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            7764     334456789999999999999999999864

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=9.3e-24  Score=194.46  Aligned_cols=151  Identities=25%  Similarity=0.236  Sum_probs=135.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP  187 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~  187 (677)
                      ..|||+.||+.|+.++|++||++|+.. + .+..|.||||+|+ ..++.++++.++............            
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~-~~~~~~~~~~~~~~~~~~~~~~~~------------   66 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAA-QYGHFSTTEVLLRAGVSRDARTKV------------   66 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHH-HHTCHHHHHHHHTTTCCTTCCCTT------------
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccc-cccccccccccccccccccccccc------------
Confidence            359999999999999999999999854 3 6889999999985 779999999999987665543332            


Q ss_pred             hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790          188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH  267 (677)
Q Consensus       188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~  267 (677)
                             +.++++.++...+.+++++++.+|++. +.++..|+||||+|+..|+.++|++|+++|++++.+|..|.||||
T Consensus        67 -------~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~  138 (153)
T d1awcb_          67 -------DRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD  138 (153)
T ss_dssp             -------CCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             -------cccccccccccccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHH
Confidence                   257899999999999999999999998 778999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHH
Q 005790          268 IAAYRGQPAVVEAL  281 (677)
Q Consensus       268 ~A~~~g~~~iv~~L  281 (677)
                      +|+..|+.+++++|
T Consensus       139 ~A~~~g~~eiv~lL  152 (153)
T d1awcb_         139 ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHhC
Confidence            99999999999976

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-23  Score=195.21  Aligned_cols=151  Identities=24%  Similarity=0.364  Sum_probs=119.5

Q ss_pred             hHHHHHHhcCCHHHHHHHHhc-CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 005790          197 RAVHAAARGGNLKILKELLEN-CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP  275 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~LL~~-ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~  275 (677)
                      ..|+.||..|+.++|+.||+. +.++ +..|..|+||||+|+ .|+.+++++|++++++++..+..|.+||+.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~-n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCC-CccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            469999999999999999986 5566 788999999999887 4889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCC
Q 005790          276 AVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGN  355 (677)
Q Consensus       276 ~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~  355 (677)
                      ++++++++.+ .++                                                |.+|..|.||||+|+..+
T Consensus        82 ~~~~~~l~~~-~~~------------------------------------------------n~~~~~~~t~L~~A~~~~  112 (156)
T d1bd8a_          82 DTLKVLVEHG-ADV------------------------------------------------NVPDGTGALPIHLAVQEG  112 (156)
T ss_dssp             HHHHHHHHTT-CCS------------------------------------------------CCCCTTSCCHHHHHHHHT
T ss_pred             cccccccccc-ccc------------------------------------------------ccccCCCCeeeccccccc
Confidence            9999999888 333                                                444566677777777666


Q ss_pred             CcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHc
Q 005790          356 VHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISA  405 (677)
Q Consensus       356 ~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~  405 (677)
                       +.+++++|++  |+|++.+|.+|+||||+|+..|+.+    ++++|+++
T Consensus       113 -~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~~~----iv~~Ll~h  155 (156)
T d1bd8a_         113 -HTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQD----LVDILQGH  155 (156)
T ss_dssp             -CHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCCHH----HHHHHHTT
T ss_pred             -cccccccccc--cccccccCCCCCCHHHHHHHcCCHH----HHHHHHhh
Confidence             7777776653  6677777777777777777777765    45555543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.9e-23  Score=191.11  Aligned_cols=146  Identities=29%  Similarity=0.345  Sum_probs=119.2

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP  275 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~  275 (677)
                      .||||.|++.|+.++|++||++|+++ + .|..|+||||+|+..++.++++.++.........+..+.++++.++...+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            37788888888888888888888776 3 577788888888888888888888777777666677777788888888888


Q ss_pred             HHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCC
Q 005790          276 AVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGN  355 (677)
Q Consensus       276 ~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~  355 (677)
                      +++++|+..+..                                                 ++.+|..|.||||+|+..+
T Consensus        81 ~~~~~l~~~~~~-------------------------------------------------~~~~~~~g~T~L~~A~~~g  111 (153)
T d1awcb_          81 NIVEVLLKHGAD-------------------------------------------------VNAKDMLKMTALHWATEHN  111 (153)
T ss_dssp             HHHHHHHTTTCC-------------------------------------------------TTCCCTTSCCHHHHHHHTT
T ss_pred             eeeecccccCCc-------------------------------------------------cccccccCchHHHhhhhcc
Confidence            877777766621                                                 4556788999999999988


Q ss_pred             CcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCch
Q 005790          356 VHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSAS  394 (677)
Q Consensus       356 ~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~  394 (677)
                       +.++|++|++ .|+|+|.+|.+|.||||+|+.+|+.++
T Consensus       112 -~~~iv~~ll~-~gad~~~~d~~g~Tpl~~A~~~g~~ei  148 (153)
T d1awcb_         112 -HQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             -CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             -hhheeeeccc-cccCCcccCCCCCCHHHHHHHcCCHHH
Confidence             9999999999 899999999999999999999999884

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.6e-23  Score=215.99  Aligned_cols=176  Identities=18%  Similarity=0.240  Sum_probs=113.5

Q ss_pred             ccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCH-------HHHHHHHhcCCCCCCCCCCCCcHH
Q 005790          194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQV-------EVVKDLIASFDIINSTDHQGNTPL  266 (677)
Q Consensus       194 ~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~-------eivk~Ll~~ga~in~~d~~g~tpL  266 (677)
                      .|+||||+|+..|+.++|++||++|+++ +.+|..|+||||.||..++.       +++++|..   .++..|..|+|||
T Consensus       106 ~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g~t~l  181 (301)
T d1sw6a_         106 HGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRTIL  181 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcccccCCHH
Confidence            3578888888888888888888888888 67888888888888876642       34444433   4556677888888


Q ss_pred             HHHHHcCC----H--------HHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchh
Q 005790          267 HIAAYRGQ----P--------AVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNME  334 (677)
Q Consensus       267 ~~A~~~g~----~--------~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~  334 (677)
                      |+++..+.    .        .++.+++..+..........+.++++.+...........+.     +..++       .
T Consensus       182 h~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-------~  249 (301)
T d1sw6a_         182 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD-----LKWII-------A  249 (301)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS-----HHHHH-------H
T ss_pred             HHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHh-----hHHHH-------h
Confidence            88776443    2        23455566665555566666666666665543332222221     11111       2


Q ss_pred             hhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHh
Q 005790          335 DIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLK  387 (677)
Q Consensus       335 ~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~  387 (677)
                      ..+|.+|..|+||||+|++.| +.++|++||+ .|||++.+|..|.|||++|+
T Consensus       250 ~~in~~D~~G~TpLh~A~~~g-~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         250 NMLNAQDSNGDTCLNIAARLG-NISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HTTTCCCTTSCCHHHHHHHHC-CHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             cCccCCCCCCCCHHHHHHHcC-CHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence            237888888999999999888 8999999998 89999999989999998875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=6.1e-24  Score=219.15  Aligned_cols=204  Identities=17%  Similarity=0.109  Sum_probs=133.7

Q ss_pred             HHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH---HHHHHHHHhCC
Q 005790          210 ILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP---AVVEALILASP  286 (677)
Q Consensus       210 ivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~---~iv~~LL~~g~  286 (677)
                      +...+...+.+++...|..|+||||+||..|+.++|++|+++|++++.+|..|+||||.|+..++.   ..++.|++...
T Consensus        88 ~~~~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~  167 (301)
T d1sw6a_          88 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  167 (301)
T ss_dssp             HHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             HHhcCCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh
Confidence            333344456677333489999999999999999999999999999999999999999999987752   22233333323


Q ss_pred             CCccccCCCCCchhhhhhhcCch----HHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHH
Q 005790          287 SMISVKNTSGETFLHSAVSGFQT----YAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQ  362 (677)
Q Consensus       287 ~~~~~~~~~g~tpLh~A~~~~~~----~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~  362 (677)
                      ..+...|..|+||||+++..+..    ...+..  ...++.+++..+...    .......+.++++.+.... ...++.
T Consensus       168 ~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~  240 (301)
T d1sw6a_         168 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYY--LDILMGWIVKKQNRP----IQSGTNEKESKPNDKNGER-KDSILE  240 (301)
T ss_dssp             GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHH--HHHHHHHHHHGGGCC----EEEC-----------------CHHHH
T ss_pred             hhhhhcccccCCHHHHHHHHhCccccHHHHHHH--HHHHHHHHHhcCCcc----hhcccccccchhHHHHhcc-hHHHHH
Confidence            45677899999999998864322    222211  122344554444221    3334456667777665544 222222


Q ss_pred             HHh-h-CCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHH
Q 005790          363 LLM-S-APSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHI  424 (677)
Q Consensus       363 lLL-~-~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al  424 (677)
                      .+. . ..+..+|.+|.+|+||||+|++.|+.+    ++++|+++|||++.+|..|+|||++|+
T Consensus       241 ~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~----iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         241 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS----IVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHH----HHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            211 1 012247889999999999999999987    799999999999999999999998863

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.2e-22  Score=175.88  Aligned_cols=84  Identities=20%  Similarity=0.237  Sum_probs=45.5

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCC-cHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 005790          197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGS-TILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP  275 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~-TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~  275 (677)
                      ||||+|+ .|+.+++++|+++|+++ +..+..+. ||||+|+..|+.+++++|+++|++++.+|..|+||||+|++.|+.
T Consensus        38 t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~  115 (125)
T d1bi7b_          38 RPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR  115 (125)
T ss_dssp             CTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCH
T ss_pred             ccccccc-ccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCH
Confidence            4444332 34555555555555555 33333333 455555555555555555555555555555555666665555555


Q ss_pred             HHHHHHH
Q 005790          276 AVVEALI  282 (677)
Q Consensus       276 ~iv~~LL  282 (677)
                      +++++|+
T Consensus       116 ~~v~~Ll  122 (125)
T d1bi7b_         116 DVARYLR  122 (125)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHH
Confidence            5555554

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-21  Score=174.07  Aligned_cols=121  Identities=26%  Similarity=0.245  Sum_probs=110.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790          108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP  187 (677)
Q Consensus       108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~  187 (677)
                      +.++||+|+..|++++|++|+++|+ +++..+.+|.||||+|  ..|+.+++++|+++|++++..+..+.          
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~ga-d~n~~~~~g~t~l~~a--~~g~~~~v~~Ll~~ga~~~~~~~~~~----------   69 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGA-NPNAPNSYGRRPIQVM--MMGSARVAELLLLHGAEPNCADPATL----------   69 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTC-CTTCCCSSSCCTTTSS--CTTCHHHHHHHHTTTCCCCCCCTTTC----------
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCC-cccccccccccccccc--cccccccccccccccccccccccccc----------
Confidence            5689999999999999999999997 5678899999999865  35999999999999999987766542          


Q ss_pred             hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHh
Q 005790          188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA  250 (677)
Q Consensus       188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~  250 (677)
                              .||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+.+|+.+++++|+.
T Consensus        70 --------~~~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          70 --------TRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             --------CCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             --------cccccccccccccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                    37999999999999999999999998 8899999999999999999999999975

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=2.1e-22  Score=177.55  Aligned_cols=105  Identities=33%  Similarity=0.421  Sum_probs=74.6

Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchH
Q 005790          231 TILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTY  310 (677)
Q Consensus       231 TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~  310 (677)
                      |||++|+++|+.++|++|+++|++++..+..|+||||+|+..|+.+++++|++.|. +                      
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~-d----------------------   60 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA-D----------------------   60 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC-T----------------------
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccc-e----------------------
Confidence            67777777777777777777777777777777777777777777777777776652 1                      


Q ss_pred             HHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHH
Q 005790          311 AFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLL  386 (677)
Q Consensus       311 ~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A  386 (677)
                                                +|.+|..|.||||+|+..+ +.++|++|++ .|+|+|.+|.+|+||||+|
T Consensus        61 --------------------------in~~d~~g~tpLh~A~~~~-~~~~v~~Ll~-~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          61 --------------------------INAPDKHHITPLLSAVYEG-HVSCVKLLLS-KGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             --------------------------TTCCSSSCSCHHHHHHTTT-CCHHHHHHHT-TCCCSSSSSSSTCCCCCTC
T ss_pred             --------------------------eeecccccccchhhhhhcC-chhhhhhhhc-ccccceeeCCCCCCHHHHH
Confidence                                      4455666777777777766 7777777777 7777777777777777766

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=9.9e-22  Score=173.09  Aligned_cols=108  Identities=29%  Similarity=0.353  Sum_probs=104.0

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 005790          196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP  275 (677)
Q Consensus       196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~  275 (677)
                      .|||++|++.|+.++|++|+++|+++ +..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            48999999999999999999999998 78999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790          276 AVVEALILASPSMISVKNTSGETFLHSAVS  305 (677)
Q Consensus       276 ~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~  305 (677)
                      +++++|+++| ++++.+|..|.||||+|..
T Consensus        82 ~~v~~Ll~~G-ad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          82 SCVKLLLSKG-ADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHHHHHHTTC-CCSSSSSSSTCCCCCTCSS
T ss_pred             hhhhhhhccc-ccceeeCCCCCCHHHHHhH
Confidence            9999999999 7899999999999999854

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.5e-20  Score=166.00  Aligned_cols=112  Identities=24%  Similarity=0.325  Sum_probs=65.3

Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchH
Q 005790          231 TILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTY  310 (677)
Q Consensus       231 TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~  310 (677)
                      ++|+.||..|++++|++|+++|+++|.+|.+|+||||+|+..|+.+++++|++.+. +                      
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~-~----------------------   59 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV-N----------------------   59 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC-C----------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccccc-c----------------------
Confidence            45566666666666666666666666666666666666666666666666665552 1                      


Q ss_pred             HHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCC-CCCcHHHHH--h
Q 005790          311 AFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN-DGMTTLDLL--K  387 (677)
Q Consensus       311 ~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~-~G~TpL~~A--~  387 (677)
                                                +|.+|.+|+||||+|+..| +.++|++|++ .|+|++..+. .|.||++++  +
T Consensus        60 --------------------------~~~~d~~g~tpLh~A~~~g-~~~~v~~Ll~-~ga~v~~~~~~~~~~~~~~~~a~  111 (130)
T d1ycsb1          60 --------------------------VNAADSDGWTPLHCAASCN-NVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEM  111 (130)
T ss_dssp             --------------------------TTCCCTTCCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSS
T ss_pred             --------------------------cccccccCcccccccchhh-HHHHHHHHHH-cCCCcccccCCCCCCHHHHHHHH
Confidence                                      3334555666666666655 6666666666 5666665543 355555544  3


Q ss_pred             hCCCCc
Q 005790          388 QRPQSA  393 (677)
Q Consensus       388 ~~~~~~  393 (677)
                      ..|+.+
T Consensus       112 ~~g~~e  117 (130)
T d1ycsb1         112 EEGYTQ  117 (130)
T ss_dssp             STTCCC
T ss_pred             HcChHH
Confidence            445555

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3e-20  Score=166.45  Aligned_cols=117  Identities=22%  Similarity=0.258  Sum_probs=102.5

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 005790          197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPA  276 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~  276 (677)
                      ++|+.|+..|+.++|++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++++..|.+|+||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            6899999999999999999999998 889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCccccC-CCCCchhhhh--hhcCchHHHHHh
Q 005790          277 VVEALILASPSMISVKN-TSGETFLHSA--VSGFQTYAFRRL  315 (677)
Q Consensus       277 iv~~LL~~g~~~~~~~~-~~g~tpLh~A--~~~~~~~~~~~L  315 (677)
                      ++++|+++| ++++..+ ..+.|+++++  +..++.++++.|
T Consensus        82 ~v~~Ll~~g-a~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L  122 (130)
T d1ycsb1          82 VCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  122 (130)
T ss_dssp             HHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             HHHHHHHcC-CCcccccCCCCCCHHHHHHHHHcChHHHHHHH
Confidence            999999998 5677655 4588887665  443444333333

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=6.6e-19  Score=162.15  Aligned_cols=126  Identities=23%  Similarity=0.218  Sum_probs=106.4

Q ss_pred             HhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhc---CCHHHHHHHHhcCCCccccCCC
Q 005790          151 ARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARG---GNLKILKELLENCTDVLTYRDK  227 (677)
Q Consensus       151 ~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~eivk~LL~~ga~~~~~~d~  227 (677)
                      ++.++...+..++..|+|++.....             ......|+||||+|+..   ++.++|++|+++|+++ +.+|.
T Consensus        14 v~~~dl~~l~~~~~~g~d~~~~~~~-------------~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~   79 (154)
T d1dcqa1          14 VKTRDIFGLLQAYADGVDLTEKIPL-------------ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTG   79 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCC-------------SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCT
T ss_pred             HHhCCHHHHHHHHHcCCCcCCCCCc-------------ccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhh
Confidence            5777777777777777776543211             11233468999999974   6799999999999998 88999


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcc
Q 005790          228 QGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMIS  290 (677)
Q Consensus       228 ~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~  290 (677)
                      .|+||||+||..|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|++.+....+
T Consensus        80 ~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          80 KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             hhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999997754443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=7.7e-19  Score=161.71  Aligned_cols=89  Identities=16%  Similarity=0.231  Sum_probs=72.2

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCccc-----cCCCCCCcHHHHHHHh---CCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 005790          197 RAVHAAARGGNLKILKELLENCTDVLT-----YRDKQGSTILHAAAGR---GQVEVVKDLIASFDIINSTDHQGNTPLHI  268 (677)
Q Consensus       197 t~Lh~A~~~g~~eivk~LL~~ga~~~~-----~~d~~g~TpL~~A~~~---g~~eivk~Ll~~ga~in~~d~~g~tpL~~  268 (677)
                      ..|+.|++.+++..+..++..|.++..     ..+..|+||||+|+..   ++.++|++|+++|++++.+|..|+||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            356788888998888888888887622     2266788888888864   56788888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHhC
Q 005790          269 AAYRGQPAVVEALILAS  285 (677)
Q Consensus       269 A~~~g~~~iv~~LL~~g  285 (677)
                      |+..|+.+++++|+++|
T Consensus        88 A~~~~~~~~v~~Ll~~g  104 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGK  104 (154)
T ss_dssp             HHHTTCHHHHHHHHHTT
T ss_pred             ccccccccccccccccC
Confidence            88888888888888877