Citrus Sinensis ID: 005849
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 674 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RBN5 | 879 | Valine--tRNA ligase OS=Th | yes | no | 0.893 | 0.684 | 0.513 | 0.0 | |
| Q97GG8 | 881 | Valine--tRNA ligase OS=Cl | yes | no | 0.873 | 0.668 | 0.525 | 0.0 | |
| Q46IA7 | 933 | Valine--tRNA ligase OS=Pr | yes | no | 0.882 | 0.637 | 0.530 | 0.0 | |
| Q3AF87 | 878 | Valine--tRNA ligase OS=Ca | yes | no | 0.887 | 0.681 | 0.538 | 0.0 | |
| Q7TUI9 | 929 | Valine--tRNA ligase OS=Pr | yes | no | 0.890 | 0.645 | 0.515 | 0.0 | |
| Q8YX97 | 1014 | Valine--tRNA ligase OS=No | yes | no | 0.875 | 0.581 | 0.516 | 0.0 | |
| Q5N3J4 | 909 | Valine--tRNA ligase OS=Sy | yes | no | 0.864 | 0.641 | 0.513 | 0.0 | |
| Q7U3N4 | 914 | Valine--tRNA ligase OS=Sy | yes | no | 0.876 | 0.646 | 0.535 | 0.0 | |
| Q6MQK8 | 894 | Valine--tRNA ligase OS=Bd | yes | no | 0.853 | 0.643 | 0.532 | 0.0 | |
| Q8XJ42 | 880 | Valine--tRNA ligase OS=Cl | yes | no | 0.875 | 0.670 | 0.511 | 0.0 |
| >sp|Q8RBN5|SYV_THETN Valine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=valS PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/619 (51%), Positives = 440/619 (71%), Gaps = 17/619 (2%)
Query: 60 PKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIM 119
PK F E+RIY++W +G+F P + PF I +PPPNVTG LHMGHA+ TL+DI+
Sbjct: 10 PKEF----EDRIYSFWMEKGFFTPEIDPEKKPFTIVIPPPNVTGELHMGHALDNTLQDIL 65
Query: 120 VRYHRMKGRPTLWLPGTDHAGIATQL-VVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178
+R+ RM+G LW+PGTDHA IAT++ V++K+ G + +L+R+EF ++ WEWK+KY
Sbjct: 66 IRWRRMQGYAALWIPGTDHASIATEIKVLDKIREETGKTKKDLTREEFLEKAWEWKDKYE 125
Query: 179 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238
I SQ+K+LG+SCDWTR FT+DE+ S+AV E F+ L+EKGLIY+G+ ++NW P+ TA
Sbjct: 126 NRILSQLKKLGSSCDWTRTAFTMDEKRSKAVREVFVSLYEKGLIYKGNRIINWCPSCNTA 185
Query: 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298
+SD EVE+ E G L+YIKY V G D++ IATTRPET+ GDVA+AV+P+DE Y IG
Sbjct: 186 LSDAEVEHKEHKGHLWYIKYPVKGEEDYVVIATTRPETMLGDVAVAVHPEDERYRHLIGK 245
Query: 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 358
I+P+ GR +P+I+D+YVD FGTG +K++P HD ND+ + + LP +N+MN++ T+
Sbjct: 246 TLILPLV-GREIPVIADEYVDPSFGTGAVKVTPAHDPNDFEIGVRHNLPFVNIMNENATI 304
Query: 359 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVT 418
NE G + GLDR+EAR+K+ DLEE GL +K E H V R V+EPL+S+QWFV
Sbjct: 305 NENGGKYEGLDRYEAREKIVKDLEEQGLLLKVEEHVHNVGHCYRCDTVVEPLLSEQWFVK 364
Query: 419 MEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEE 478
MEPLA+ AL V++G++ +PERFEKIY +WL NIKDWCISRQLWWGHRIP WY ++
Sbjct: 365 MEPLAKPALQVVKEGKIKFVPERFEKIYTNWLENIKDWCISRQLWWGHRIPAWYC--EDC 422
Query: 479 EYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY 538
++ D + + I+QD +VLDTWFSSALWPFST+GWP+ +D K FY
Sbjct: 423 GHVTVSRED----PVKCEVCGSTNIHQDENVLDTWFSSALWPFSTMGWPE-ETEDLKYFY 477
Query: 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPI 598
PT +L TG+DI+FFWVARM+ M +EF +PF +V +HGL+RD+ GRKMSK+LGN IDP+
Sbjct: 478 PTDVLVTGYDIIFFWVARMIFMSLEFMKEIPFKYVLIHGLVRDALGRKMSKSLGNGIDPL 537
Query: 599 DTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDIS 657
+ I+++GAD LRFT+ +G A G D+ S E++ ++ F NKLWNA +++L NL +ND +
Sbjct: 538 EVIEKYGADTLRFTLVIGNAPGNDMRFSWEKVEHSRNFANKLWNASRYVLLNL-DENDTN 596
Query: 658 RW--EILLAYKVCVLTYGN 674
+ + LA K + Y N
Sbjct: 597 LYLDNLALADKWILTRYNN 615
|
Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner. Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 9 |
| >sp|Q97GG8|SYV_CLOAB Valine--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=valS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/599 (52%), Positives = 423/599 (70%), Gaps = 10/599 (1%)
Query: 57 DTLPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTL 115
D + KT+D E+RIY WWE +G+F P ++ P+ I MPPPN+TG LH+GHA+ L
Sbjct: 5 DEMAKTYDPKEFEDRIYKWWEEEGFFTPKVDKNKKPYTIMMPPPNITGKLHLGHALDCAL 64
Query: 116 EDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKE 175
+D M+R RM+G LWLPG DHA IAT++ VEK + EG+ + E+ R++F +RVW+W +
Sbjct: 65 QDFMIRAKRMQGYEALWLPGQDHASIATEVRVEKEILKEGLNKKEMGREKFLERVWDWTK 124
Query: 176 KYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNL 235
+Y I Q K+LG S D+TRE FT+DE+L++AV F++L+E GLIYQG+ + NW P
Sbjct: 125 EYRERIKGQQKKLGVSADFTRESFTMDEKLNKAVRTVFVKLYEDGLIYQGNRITNWCPKC 184
Query: 236 QTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF 295
QTA+SD E+EY E+ G ++IKY V G F+ IATTRPET+ GD A+AVNP+DE Y +F
Sbjct: 185 QTALSDAEIEYKEDQGFFWHIKYPVEGEDSFIEIATTRPETMLGDTAVAVNPKDERYKEF 244
Query: 296 IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKD 355
IG + ++P+ GR +P+++D YVD EFGTG +KI+P HD NDY + ++ L + ++N D
Sbjct: 245 IGKLLVLPLL-GRKIPVVADDYVDMEFGTGAVKITPAHDPNDYEVGKRHDLKEIVMLNND 303
Query: 356 GTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQW 415
GT+ E G + G+DR+EARK + SDL+E G VK + H V R G +IEP+VSKQW
Sbjct: 304 GTIKEGFGKYSGMDRYEARKAIVSDLKEEGYLVKIKEHVHNVGTHDRCGNIIEPMVSKQW 363
Query: 416 FVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG 475
+V ME LA+ A+ AV+ G+ +PERF+KIY +W+ NI+DWCISRQLWWGHRIPVWY
Sbjct: 364 YVKMESLAKPAIEAVKAGKTKFVPERFDKIYFNWMENIQDWCISRQLWWGHRIPVWY-CK 422
Query: 476 KEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFK 535
E IV+ +A K + +N+E QD DVLDTWFSSALWPFSTLGWPD + +D +
Sbjct: 423 DCGEIIVSEKEPKACSKCN---SENLE--QDKDVLDTWFSSALWPFSTLGWPDKN-EDLE 476
Query: 536 KFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI 595
FYPT L TG+DI+FFWVARMV GI G VPF HVY+HGL+RD++GRKMSK+LGN +
Sbjct: 477 YFYPTDTLVTGYDIIFFWVARMVFSGIYNMGEVPFKHVYIHGLVRDAEGRKMSKSLGNGV 536
Query: 596 DPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQ 653
DP+D I FGADALRF + G A G D+ E++ A + F NK+WNA +F+L NL +
Sbjct: 537 DPLDVIDTFGADALRFMLITGNAPGNDIRYKTEKVEAARNFANKIWNASRFVLMNLDKE 595
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Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner. Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q46IA7|SYV_PROMT Valine--tRNA ligase OS=Prochlorococcus marinus (strain NATL2A) GN=valS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/620 (53%), Positives = 417/620 (67%), Gaps = 25/620 (4%)
Query: 59 LPKTFD-FTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
LPKT+D +E R WE +G FKP+ DPF + +PPPNVTGSLHMGHA L D
Sbjct: 16 LPKTYDPVGTENRWQKAWEEKGAFKPDPSAPGDPFSVVIPPPNVTGSLHMGHAFNTALID 75
Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
+VRY R+KG L LPGTDHA IA Q ++E+ L EG R +L R F ++ WEWKEK
Sbjct: 76 TVVRYKRLKGNNVLCLPGTDHASIAVQTILERQLKEEGKNRRDLGRASFLEKAWEWKEKS 135
Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
GG I Q+KRLG S DW+RERFTLDE LS+AV EAF+RLHEKGLIY+G Y+VNW P +
Sbjct: 136 GGRIVDQLKRLGYSVDWSRERFTLDEGLSKAVSEAFVRLHEKGLIYRGEYLVNWCPASGS 195
Query: 238 AVSDLEVEYSEEPGTLYYIKYRVAGRS-------DFLTIATTRPETLFGDVALAVNPQDE 290
AVSDLEVE E G L++ +Y + S +L +ATTRPET+ GDVA+AVNP DE
Sbjct: 196 AVSDLEVEMKEVDGHLWHFRYPLVTSSVSSAKQISYLEVATTRPETMLGDVAVAVNPSDE 255
Query: 291 HYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILN 350
Y IG +P+ GR +PII D +VDK+FGTG +K++P HD ND+ + ++ LP +
Sbjct: 256 RYKDLIGEKLTLPLV-GRTIPIIGDPHVDKDFGTGCVKVTPAHDPNDFEIGQRHDLPQIT 314
Query: 351 VMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410
VM K GT+N AG F GLDRFEAR+ + L+E GL K E + VP S RG +EPL
Sbjct: 315 VMTKKGTMNHNAGQFEGLDRFEAREAVIDSLKEIGLLTKIEAYKHSVPFSDRGKVPVEPL 374
Query: 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV 470
+S QWFV M+PL+ EKG+ +P R+ K+Y WL++I+DWCISRQLWWGHRIP
Sbjct: 375 LSTQWFVKMDPLSSSCSEFFEKGQPKFIPNRWSKVYRDWLTDIRDWCISRQLWWGHRIPA 434
Query: 471 WYIVGK-------EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFST 523
W+++ + E YIVAR DEA + A +KYG +V+I QD DVLDTWFSS LWPFST
Sbjct: 435 WFVISQTDNKVVNETPYIVARTEDEAKKLAREKYGDSVKIEQDEDVLDTWFSSGLWPFST 494
Query: 524 LGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ 583
LGWPD + DF+++YPT L TG DI+FFWVARM MM FT +PF+ VY+HGL+RD Q
Sbjct: 495 LGWPDETHPDFQRWYPTNTLVTGFDIIFFWVARMTMMAGVFTERMPFADVYIHGLVRDEQ 554
Query: 584 GRKMSKTLGNVIDPIDTIKEFGADALRFTI--SLGTAGQDLSLSIER-------LTANKA 634
RKMSK+ GN IDP+ I+ +G DALRF + + AGQD+ L +R + A++
Sbjct: 555 NRKMSKSAGNGIDPLLLIERYGTDALRFALVREVAGAGQDIRLDFDRKNQTSATVEASRN 614
Query: 635 FTNKLWNAGKFILQNLPSQN 654
F NKLWNA +F L NL Q+
Sbjct: 615 FANKLWNATRFALINLEDQD 634
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Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner. Prochlorococcus marinus (strain NATL2A) (taxid: 59920) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q3AF87|SYV_CARHZ Valine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=valS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/611 (53%), Positives = 427/611 (69%), Gaps = 13/611 (2%)
Query: 58 TLPKTFDFTSEERI-YNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLE 116
TLP + ER Y +WE G+F + +PF I MPPPNVTG LHMGHA+ T++
Sbjct: 4 TLPSVYSPQEVERKWYKYWEENGFFHTEPDE-REPFCIVMPPPNVTGQLHMGHALDNTMQ 62
Query: 117 DIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEK 176
DI+ RY RM+G TLWLPGTDHAGIATQ VE+ L EG+ + +L R++F +RVW WKE
Sbjct: 63 DILARYKRMQGFNTLWLPGTDHAGIATQAKVEEELRKEGLTKDDLGREKFLERVWAWKEN 122
Query: 177 YGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQ 236
YG IT Q++ LGASCDW RERFTLDE S AV E F+RL+EKGLIY+ Y+ NW P+ +
Sbjct: 123 YGNRITEQLRTLGASCDWKRERFTLDEGCSEAVKEVFLRLYEKGLIYRDYYITNWCPHCK 182
Query: 237 TAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFI 296
T +SD+EVE+ E G LYYI Y + S +LT+ATTRPET+ GD A+AV+P+DE Y + I
Sbjct: 183 TTISDIEVEHLEREGKLYYINYPLEDGSGYLTVATTRPETMLGDTAVAVHPEDERYRELI 242
Query: 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG 356
G I+P+ R +P+I+D+YVDKEFGTG +KI+P HD ND+ + + LP + V++ D
Sbjct: 243 GKNVILPLV-NRPIPVIADEYVDKEFGTGAVKITPAHDPNDFEVGLRHKLPQVVVLDDDA 301
Query: 357 TLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
+NE AG +RGLDR+EARKK+ DL++ GL VK+E T V R VIEP +SKQWF
Sbjct: 302 VMNENAGKYRGLDRYEARKKIVEDLKDLGLLVKEEEITHSVGHCYRCDTVIEPRLSKQWF 361
Query: 417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
V M+PLAE A+ A G++ +PERF KIY +WL NI+DWCISRQLWWGHRIPVWY +
Sbjct: 362 VKMKPLAEPAIEAALTGKVKFVPERFTKIYLNWLYNIRDWCISRQLWWGHRIPVWY-CDE 420
Query: 477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536
E I +R ++ K ++ +++QDPDVLDTWFSSALWPFSTLGWP + ++ K
Sbjct: 421 CGEVIPSREEVKSCPKC-----QSTKVHQDPDVLDTWFSSALWPFSTLGWPQ-NTEELKY 474
Query: 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596
+YPT++L TG DI+FFWVARM+ MG+EF VPF V +HGL+ D+QGRKMSK+LGN +D
Sbjct: 475 YYPTSVLVTGRDIIFFWVARMLFMGLEFMKEVPFKEVLIHGLVLDAQGRKMSKSLGNGVD 534
Query: 597 PIDTIKEFGADALRFTISLG-TAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLP--SQ 653
P++ I GAD+LRF + G T G DL ERL + F NKLWNA +F+L NL +
Sbjct: 535 PVEVIASHGADSLRFMLVTGNTPGNDLRFHFERLDGARNFANKLWNASRFVLMNLEGFTP 594
Query: 654 NDISRWEILLA 664
I + E+ LA
Sbjct: 595 QGIKQEELTLA 605
|
Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner. Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q7TUI9|SYV_PROMM Valine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313) GN=valS PE=3 SV=2 | Back alignment and function description |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/623 (51%), Positives = 424/623 (68%), Gaps = 23/623 (3%)
Query: 57 DTLPKTFD-FTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTL 115
D L KT+D +E R WE G F P+ + +PF + +PPPNVTGSLHMGHA L
Sbjct: 16 DALAKTYDPAGTESRWQCAWEESGVFHPDPQAAGEPFSVVIPPPNVTGSLHMGHAFNTAL 75
Query: 116 EDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKE 175
D +VR+ R++G+ L LPGTDHA IA Q ++EK L AE I R +L R+ F +R W WKE
Sbjct: 76 IDTIVRFQRLQGKNVLCLPGTDHASIAVQTILEKQLKAEAISRYDLGREAFLERAWAWKE 135
Query: 176 KYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNL 235
+ GG I Q++RLG S DW R+RFTLDE LS AV EAF+RLHE+GLIY+G Y+VNW P
Sbjct: 136 ESGGRIVDQLRRLGYSVDWQRQRFTLDEGLSAAVREAFVRLHEQGLIYRGEYLVNWCPAS 195
Query: 236 QTAVSDLEVEYSEEPGTLYYIKYRVAG-----RSDFLTIATTRPETLFGDVALAVNPQDE 290
+AVSDLEVE E G L++++Y + G + L +ATTRPET+ GDVA+AVNP DE
Sbjct: 196 GSAVSDLEVEMKEVDGHLWHLRYPLTGGPAADGTTHLEVATTRPETMLGDVAVAVNPADE 255
Query: 291 HYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILN 350
Y +G I+P+ GR +P+I+D +VD++FGTG +K++P HD ND+ + R+ LP +
Sbjct: 256 RYRHLVGQTLILPL-LGREIPVIADDHVDQDFGTGCVKVTPAHDPNDFAIGRRHDLPQIT 314
Query: 351 VMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410
VMNK+G++N AG F GLDRFEARK + + L+E GL VK EPH VP S RG +EPL
Sbjct: 315 VMNKNGSMNGHAGRFEGLDRFEARKAVVAALQEEGLLVKVEPHRHSVPYSDRGKVPVEPL 374
Query: 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV 470
+S QWFV MEPLA + ++ G +P R++K+Y WL+ I+DWCISRQLWWGHRIP
Sbjct: 375 LSTQWFVRMEPLAARCHECLDHGAPRFVPNRWQKVYRDWLTEIRDWCISRQLWWGHRIPA 434
Query: 471 WYIVGKEEE-------YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFST 523
W++V + ++ Y+VAR+ +EA ++A ++G+ V I QD DVLDTWFSS LWPFST
Sbjct: 435 WFVVSETDDQLTDATPYLVARSEEEAWQQARDQFGEAVVIQQDEDVLDTWFSSGLWPFST 494
Query: 524 LGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ 583
+GWPD + D + +YPT+ L TG DI+FFWVARM MM FTG +PF+ VY+HGL+RD Q
Sbjct: 495 MGWPDQESADLECWYPTSTLVTGFDIIFFWVARMTMMAGAFTGRMPFADVYIHGLVRDEQ 554
Query: 584 GRKMSKTLGNVIDPIDTIKEFGADALRFTI--SLGTAGQDLSLSIER-------LTANKA 634
RKMSK+ GN IDP+ I+ +G DALRF + + AGQD+ L +R + A +
Sbjct: 555 NRKMSKSAGNGIDPLLLIERYGTDALRFALVREVAGAGQDIRLDYDRKSDTSATVEAARN 614
Query: 635 FTNKLWNAGKFILQNLPSQNDIS 657
F NKLWNA +F L NL + S
Sbjct: 615 FANKLWNATRFALMNLGGETPAS 637
|
Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner. Prochlorococcus marinus (strain MIT 9313) (taxid: 74547) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q8YX97|SYV_NOSS1 Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=valS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/610 (51%), Positives = 422/610 (69%), Gaps = 20/610 (3%)
Query: 59 LPKTFD-FTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
LP +D FT+E + +WE +K + +G +P+ + +PPPNVTGSLHMGHA L D
Sbjct: 8 LPSLYDPFTTEAKWQKFWEENQIYKADPNKGGEPYCVVIPPPNVTGSLHMGHAFESALID 67
Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
+VRYHRM+GR TLWLPGTDHA IA ++EK L AEG R EL R++F +R W+WK +
Sbjct: 68 TLVRYHRMQGRNTLWLPGTDHASIAVHTILEKQLKAEGKTRQELGREKFLERSWQWKAES 127
Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
GGTI +Q++RLG S DW+RERFTLDE LS+AV EAF+ L+++GLIY+G Y+VNW P Q+
Sbjct: 128 GGTIVNQLRRLGVSVDWSRERFTLDEGLSKAVAEAFVSLYDEGLIYRGEYLVNWCPATQS 187
Query: 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297
AVSD+EVE E G L++ +Y + S ++ +ATTRPET+ GD A+AVNP D+ Y IG
Sbjct: 188 AVSDVEVESKEVEGNLWHFRYPLTDGSGYVEVATTRPETMLGDTAVAVNPNDDRYKHLIG 247
Query: 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357
+P+T + +PIISD+ VD FGTG +K++P HD ND+ + ++ LP +N++NKDGT
Sbjct: 248 KTLTLPITQ-QEIPIISDELVDPAFGTGCVKVTPAHDLNDFEMGKRHNLPFINILNKDGT 306
Query: 358 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFV 417
LN G F G DRF ARK + S LE G VK E + VP S RG +EPL+S QWFV
Sbjct: 307 LNANGGEFAGQDRFVARKNVVSRLETDGFLVKIEDYKHTVPYSDRGKVPVEPLLSTQWFV 366
Query: 418 TMEPLAEKALHAV-EKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
+ PLA+K+L + EK +P+R+ K+Y WL N++DWCISRQLWWGH+IP WY V +
Sbjct: 367 KIRPLADKSLAFLDEKNSPEFVPQRWTKVYRDWLVNLRDWCISRQLWWGHQIPAWYAVSE 426
Query: 477 -------EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529
++VA++ +EA EKA ++G+NV++ QDPDVLDTWFSS LWPFSTLGWP+
Sbjct: 427 TNGQITDNTPFVVAKSTNEAWEKAKSQFGENVQLEQDPDVLDTWFSSGLWPFSTLGWPEQ 486
Query: 530 SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSK 589
+ D K+YPTT L TG DI+FFWVARM MM FTG +PF VY+HGL+RD +KMSK
Sbjct: 487 TP-DLAKYYPTTTLVTGFDIIFFWVARMTMMAGHFTGQMPFQTVYIHGLVRDENNKKMSK 545
Query: 590 TLGNVIDPIDTIKEFGADALRFTI--SLGTAGQDLSLSIER-------LTANKAFTNKLW 640
+ N IDP+ I ++G DALR+T+ + AGQD+ L +R + A++ F NKLW
Sbjct: 546 SANNGIDPLLLIDKYGTDALRYTLVREVAGAGQDIRLEYDRKKDESPSVEASRNFANKLW 605
Query: 641 NAGKFILQNL 650
NA +F++ NL
Sbjct: 606 NAARFVMMNL 615
|
Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q5N3J4|SYV_SYNP6 Valine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=valS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/602 (51%), Positives = 418/602 (69%), Gaps = 19/602 (3%)
Query: 66 TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRM 125
+E R WE F+ N + ++P+ I +PPPNVTGSLHMGHA +L D+++R+ RM
Sbjct: 16 ATEVRWQKLWEETSAFQANSQSSAEPYCIVIPPPNVTGSLHMGHAFEASLIDVLIRFQRM 75
Query: 126 KGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQI 185
+G+ LWLPGTDHA IA Q ++++ L EG+ R +L R++F +R W+WK + GGTI Q+
Sbjct: 76 RGKNALWLPGTDHASIAVQTILDRQLREEGLSRYDLGREKFLERAWQWKAESGGTIVGQL 135
Query: 186 KRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE 245
+RLG S DW+RERFT+DE LS+AV+EAFI+L+E+GLIY+G Y+VNW P Q+AVSDLEVE
Sbjct: 136 RRLGVSVDWSRERFTMDEGLSKAVLEAFIQLYEEGLIYRGQYLVNWCPASQSAVSDLEVE 195
Query: 246 YSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMT 305
E G+L+Y +Y + S L +ATTRPET+ GD A+AVNPQD+ Y IG +P+
Sbjct: 196 MKEVDGSLWYFRYPLTDGSGHLEVATTRPETMLGDTAVAVNPQDKRYQHLIGKTITLPLV 255
Query: 306 YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLF 365
R +PII+D +V+ EFGTG +K++P HD ND+ + ++ LP++ VMNKDGT+NE AG F
Sbjct: 256 Q-REIPIIADPWVEAEFGTGCVKVTPAHDPNDFAMGQRHQLPLITVMNKDGTMNENAGQF 314
Query: 366 RGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEK 425
GLDRFEARK + + LEE G VK E + +P S RG +EPL+S QWFV +EPLA++
Sbjct: 315 EGLDRFEARKAVVAALEEAGFLVKVEDYRHSIPISDRGKVPVEPLLSTQWFVKIEPLAQR 374
Query: 426 ALHAVEKGE-LTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWY-------IVGKE 477
AL A+ E +PER+ K+Y WL N++DWCISRQLWWGH+IP WY +V
Sbjct: 375 ALEALNGEEGPRFVPERWTKVYRDWLENLRDWCISRQLWWGHQIPAWYAVSETNGVVTDS 434
Query: 478 EEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 537
++VA++A+EA ++A ++G +V + QD DVLDTWFSS LWPFSTLGWP+ +D + F
Sbjct: 435 TPFVVAKSAEEAQQQAIAQFGPDVVLQQDEDVLDTWFSSGLWPFSTLGWPN-QTEDLETF 493
Query: 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 597
YPT+ L TG DI+FFWVARM MM FTG +PF VY+HGL+RD +KMSK+ GN IDP
Sbjct: 494 YPTSTLVTGFDIIFFWVARMTMMAGHFTGKMPFKDVYIHGLVRDENNKKMSKSAGNGIDP 553
Query: 598 IDTIKEFGADALRFTI--SLGTAGQDLSLSIERLTANKA-------FTNKLWNAGKFILQ 648
+ I +G DALR+ + + AGQD+ L R T A F NK+WNA +F++
Sbjct: 554 LILIDRYGTDALRYALIREVVGAGQDIRLDYNRKTDESATVETSRNFANKVWNASRFVML 613
Query: 649 NL 650
NL
Sbjct: 614 NL 615
|
Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner. Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q7U3N4|SYV_SYNPX Valine--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=valS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/609 (53%), Positives = 416/609 (68%), Gaps = 18/609 (2%)
Query: 59 LPKTFD-FTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
L KT+D +E R WE QG F P+ + +PF + +PPPNVTGSLHMGHA L D
Sbjct: 4 LAKTYDPVGTEARWQQAWEDQGAFHPDPKAPGEPFSVVIPPPNVTGSLHMGHAFNTALID 63
Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
+VRY R+ G+ L LPGTDHA IA Q ++EK L EG R L RD F +R W+WK +
Sbjct: 64 TIVRYQRLAGKNVLCLPGTDHASIAVQTILEKQLKQEGKTRHHLGRDGFLERAWQWKAES 123
Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
GG I Q++RLG S DW R+RFTLDE LS AV EAF+RLHE+GLIY+G Y+VNW P +
Sbjct: 124 GGRIVGQLRRLGYSVDWQRQRFTLDEGLSEAVKEAFVRLHEQGLIYRGEYLVNWCPASGS 183
Query: 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297
AVSDLEVE E G L++ +Y ++ L +ATTRPET+ GD A+AVNP DE Y+ +G
Sbjct: 184 AVSDLEVEMKEVDGHLWHFRYPLSSGDGHLEVATTRPETMLGDTAVAVNPTDERYAHLVG 243
Query: 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357
+P GR +PI++D +V+K+FGTG +K++P HD ND+ + ++ GLP + VM K+GT
Sbjct: 244 QTLTLPFV-GREIPIVADDHVEKDFGTGCVKVTPAHDPNDFAIGQRHGLPQITVMRKNGT 302
Query: 358 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFV 417
+N+ AG F GLDRFEARK + + L+E GL VK E + VP S RG +EPL+S QWFV
Sbjct: 303 MNKEAGQFEGLDRFEARKAVVAGLDELGLLVKVEDYRHSVPYSDRGKVPVEPLLSTQWFV 362
Query: 418 TMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV--- 474
EPLA + A+EK + +PER+EK+Y WL++I+DWCISRQLWWGHRIP W+++
Sbjct: 363 RTEPLAARCREALEKQDPRFIPERWEKVYRDWLTDIRDWCISRQLWWGHRIPAWFVISET 422
Query: 475 -GKEEE---YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS 530
GK + Y+VARN EALEKA KYG I QD DVLDTWFSS LWPFSTLGWPD
Sbjct: 423 GGKYTDTTPYVVARNEVEALEKAKAKYGAAAVIEQDEDVLDTWFSSGLWPFSTLGWPDAE 482
Query: 531 ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKT 590
+ D +++YPT+ L TG DI+FFWVARM MM FTG +PF VY+HGL+RD Q RKMSK+
Sbjct: 483 SADLQRWYPTSTLVTGFDIIFFWVARMTMMAGAFTGEMPFQDVYIHGLVRDEQNRKMSKS 542
Query: 591 LGNVIDPIDTIKEFGADALRFTI--SLGTAGQDLSLSIERLT-------ANKAFTNKLWN 641
GN IDP+ I +G DALRF + + AGQD+ L +R T A++ F NKLWN
Sbjct: 543 AGNGIDPLLLIDRYGTDALRFALVREVAGAGQDIRLDYDRKTDTSATVEASRNFANKLWN 602
Query: 642 AGKFILQNL 650
A +F L NL
Sbjct: 603 ATRFALMNL 611
|
Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner. Synechococcus sp. (strain WH8102) (taxid: 84588) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q6MQK8|SYV_BDEBA Valine--tRNA ligase OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=valS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/584 (53%), Positives = 406/584 (69%), Gaps = 9/584 (1%)
Query: 68 EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKG 127
E R Y WWE GYFK + PF I +PPPNVTG LHMGHA+ T++D+M+R+ RM G
Sbjct: 17 ESRTYEWWEKNGYFKAQDQSTKPPFSIILPPPNVTGFLHMGHALDHTIQDMMIRWKRMNG 76
Query: 128 RPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKR 187
T+WLPGTDHAGIATQ VVE+ L +G+ R +L R++F ++VW+WK +YG I Q++R
Sbjct: 77 YNTMWLPGTDHAGIATQSVVERELKKDGVTRHDLGREKFVEKVWDWKHQYGNRIYGQMRR 136
Query: 188 LGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247
LG SCDW R FTLDE +S+AV + F+ LH+KGLIY+G +VNWS L+TA+SDLEVE+
Sbjct: 137 LGDSCDWDRAVFTLDEGVSKAVRKVFVSLHKKGLIYRGQRLVNWSGPLETAISDLEVEHK 196
Query: 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYG 307
+ G+LY++KY + S FL +ATTRPET+ GD A+ V+P+DE Y IG ++P+T
Sbjct: 197 QIKGSLYHVKYPLEDGSGFLVVATTRPETMLGDSAVCVHPEDERYKHLIGKNVLLPLT-N 255
Query: 308 RHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRG 367
R + II+D YVDKEFG+GV+KI+P HD NDY + + L +N++ K +NE G++ G
Sbjct: 256 RKIKIIADTYVDKEFGSGVVKITPAHDFNDYKIGKTHNLEFINILTKKAEINENGGVYAG 315
Query: 368 LDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKAL 427
L EARK++ DL+ L K+EPH V R G V+EP +S+QWFV ME LA A
Sbjct: 316 LKVQEARKRILEDLKAQDLLEKEEPHVHSVGHCSRSGAVVEPYLSEQWFVKMEALAVPAK 375
Query: 428 HAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487
E G + PE + K+Y HWL+NI+DWCISRQLWWGHRIPVWY + VA
Sbjct: 376 RVAENGTIRFEPESWTKVYLHWLNNIEDWCISRQLWWGHRIPVWYCEDCNHQ-TVAETDV 434
Query: 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGH 547
A EK + +++QD DVLDTWFSSALWPFST+GWP+ + K FYPT+ L TGH
Sbjct: 435 TACEKC-----GSTKLHQDDDVLDTWFSSALWPFSTMGWPN-ETETLKTFYPTSYLVTGH 488
Query: 548 DILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGAD 607
DI+FFWVARM+MMG+EF VPF VY+HGL+RDSQGRKMSK+LGN IDP++ I++ GAD
Sbjct: 489 DIIFFWVARMIMMGLEFQRDVPFRTVYIHGLVRDSQGRKMSKSLGNSIDPVEMIEKHGAD 548
Query: 608 ALRFTISLGT-AGQDLSLSIERLTANKAFTNKLWNAGKFILQNL 650
ALRFT + +G+D S +RL + F NK+WNA +F L NL
Sbjct: 549 ALRFTFAAHLYSGKDFKFSEQRLEGYRNFMNKVWNAARFALSNL 592
|
Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner. Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) (taxid: 264462) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q8XJ42|SYV_CLOPE Valine--tRNA ligase OS=Clostridium perfringens (strain 13 / Type A) GN=valS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/610 (51%), Positives = 422/610 (69%), Gaps = 20/610 (3%)
Query: 60 PKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIM 119
PK F EER+Y+ W+ + YF P ++ P+ I MPPPN+TG LH+GHA+ TL+D++
Sbjct: 12 PKEF----EERLYSNWQEKKYFTPVIDKSKKPYTIIMPPPNITGKLHLGHALDNTLQDML 67
Query: 120 VRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGG 179
+R+ RM+G TLWLPG DHA IAT++ VE L EG+ + E+ R+ F ++VWEW ++Y
Sbjct: 68 IRFKRMQGYCTLWLPGQDHASIATEVKVENELLKEGLYKKEMGREAFLEKVWEWTDEYRE 127
Query: 180 TITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAV 239
I Q+K++G S D+TRE FT+DE LS+AV F++L+++GLIYQG+ + NW P QTA+
Sbjct: 128 RIREQLKKMGCSADFTREAFTMDENLSKAVRHVFVKLYKEGLIYQGNRITNWCPKCQTAL 187
Query: 240 SDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMM 299
SD E+EY E+ G ++IKY V G +FL IATTRPETL GD A+AVNP DE Y+ +G M
Sbjct: 188 SDAEIEYEEKEGNFWHIKYPVVGSEEFLEIATTRPETLLGDSAVAVNPSDERYAHLVGKM 247
Query: 300 AIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLN 359
+P+T R +P+I+D YVD EFGTG +KI+P HD ND+ + ++ LP + VM+ G +N
Sbjct: 248 LKLPLT-DREIPVIADDYVDVEFGTGAVKITPAHDPNDFEVGKRHNLPQIRVMDDSGVIN 306
Query: 360 EVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTM 419
+ G ++GLDR+EARK++ +DLEE GL VK +PHT V R G V+EP++SKQW+V M
Sbjct: 307 HLGGKYKGLDRYEARKQMVADLEELGLLVKIKPHTHNVGTHDRCGTVVEPIISKQWYVKM 366
Query: 420 EPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479
+ LA+ A+ V +PERFEK Y +W+ NI+DWCISRQLWWGHRIPV+Y K+
Sbjct: 367 QSLADPAIEVVRNKGTKFVPERFEKTYFNWMENIQDWCISRQLWWGHRIPVFYC--KDCG 424
Query: 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539
I+ D K + +N+E QD DVLDTWFSSALWPFSTLGWPD DD + FYP
Sbjct: 425 EIMVELEDPT--KCCKCGSENIE--QDKDVLDTWFSSALWPFSTLGWPD-RTDDLEFFYP 479
Query: 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599
T+ L TG+DI+FFWVARM+ GI G PF V +HG+IRD+QGRKMSK+LGN +DP++
Sbjct: 480 TSTLVTGYDIIFFWVARMIFSGIHNMGETPFDTVLIHGIIRDAQGRKMSKSLGNGVDPLE 539
Query: 600 TIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISR 658
I E+GADALRF + G A G D+ ER+ A + F NK+WNA +F++ NL
Sbjct: 540 VIDEYGADALRFMLVTGNAPGNDIRYIPERVEAARNFANKIWNASRFVMMNLDR------ 593
Query: 659 WEILLAYKVC 668
E++ YK C
Sbjct: 594 -ELMDKYKDC 602
|
Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner. Clostridium perfringens (strain 13 / Type A) (taxid: 195102) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 674 | ||||||
| 359487063 | 959 | PREDICTED: valyl-tRNA synthetase-like [V | 0.970 | 0.681 | 0.874 | 0.0 | |
| 359488299 | 958 | PREDICTED: valyl-tRNA synthetase-like [V | 0.970 | 0.682 | 0.872 | 0.0 | |
| 296085363 | 963 | unnamed protein product [Vitis vinifera] | 0.970 | 0.679 | 0.865 | 0.0 | |
| 255580737 | 694 | valyl-tRNA synthetase, putative [Ricinus | 0.985 | 0.956 | 0.857 | 0.0 | |
| 224065184 | 951 | predicted protein [Populus trichocarpa] | 0.913 | 0.647 | 0.895 | 0.0 | |
| 356563701 | 971 | PREDICTED: valyl-tRNA synthetase-like [G | 0.959 | 0.666 | 0.842 | 0.0 | |
| 449456259 | 923 | PREDICTED: valine--tRNA ligase-like [Cuc | 0.925 | 0.676 | 0.854 | 0.0 | |
| 334187718 | 974 | valyl-tRNA synthetase [Arabidopsis thali | 0.928 | 0.642 | 0.848 | 0.0 | |
| 218199135 | 958 | hypothetical protein OsI_25003 [Oryza sa | 0.955 | 0.672 | 0.817 | 0.0 | |
| 222636480 | 960 | hypothetical protein OsJ_23192 [Oryza sa | 0.955 | 0.670 | 0.813 | 0.0 |
| >gi|359487063|ref|XP_002270806.2| PREDICTED: valyl-tRNA synthetase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1209 bits (3129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/667 (87%), Positives = 624/667 (93%), Gaps = 13/667 (1%)
Query: 10 SGPTLLSS---YRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLP---KTF 63
S P+LLSS YRLNPLLFS R ++L H H K RFFAVAA EN+ T P K+F
Sbjct: 4 STPSLLSSCSAYRLNPLLFSHRCLRIRLSHSHL---KPRFFAVAARENDVFTSPETAKSF 60
Query: 64 DFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 123
DFTSEERIYNWW+SQGYFKPN +RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH
Sbjct: 61 DFTSEERIYNWWDSQGYFKPNLDRGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 120
Query: 124 RMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITS 183
RMKGRPTLW+PGTDHAGIATQLVVE+MLA+EGIKR ELSRDEFTKRVWEWKEKYGGTIT+
Sbjct: 121 RMKGRPTLWIPGTDHAGIATQLVVERMLASEGIKRAELSRDEFTKRVWEWKEKYGGTITN 180
Query: 184 QIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLE 243
QIKRLGASCDWTRE FTLDE+LS AV+EAF+RLHE+GLIYQGSYMVNWSPNLQTAVSDLE
Sbjct: 181 QIKRLGASCDWTREHFTLDEKLSWAVIEAFVRLHERGLIYQGSYMVNWSPNLQTAVSDLE 240
Query: 244 VEYSEEPGTLYYIKYRVAG--RSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAI 301
VEYSEEPGTLYYIKYRVAG +SD+LTIATTRPETLFGD A+AV+PQD+ YS++IG MAI
Sbjct: 241 VEYSEEPGTLYYIKYRVAGGSKSDYLTIATTRPETLFGDTAIAVHPQDDRYSRYIGRMAI 300
Query: 302 VPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 361
VPMT+GRHVPIISD+YVDK+FGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV
Sbjct: 301 VPMTFGRHVPIISDRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 360
Query: 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 421
AGL+RGLDRFEARKKLW DLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP
Sbjct: 361 AGLYRGLDRFEARKKLWLDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 420
Query: 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EEE 479
LAEKAL AVE+GELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK EEE
Sbjct: 421 LAEKALQAVERGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEE 480
Query: 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539
YIVARNA+EALEKA +KYGK+VEIYQ+PDVLDTWFSSALWPFSTLGWPDVS DFKKFYP
Sbjct: 481 YIVARNANEALEKAQEKYGKDVEIYQEPDVLDTWFSSALWPFSTLGWPDVSTQDFKKFYP 540
Query: 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599
TT+LETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQGRKMSKTLGNVIDPID
Sbjct: 541 TTVLETGHDILFFWVARMVMMGIEFTGAVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPID 600
Query: 600 TIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRW 659
TIKEFG DALRFT++LGTAGQDL+LS ERLT+NKAFTNKLWNAGKF+LQNLPSQ+DIS W
Sbjct: 601 TIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDISAW 660
Query: 660 EILLAYK 666
E +LA K
Sbjct: 661 ETILACK 667
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488299|ref|XP_003633739.1| PREDICTED: valyl-tRNA synthetase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1206 bits (3119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/666 (87%), Positives = 622/666 (93%), Gaps = 12/666 (1%)
Query: 10 SGPTLLSS---YRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKT---F 63
S P+LLSS YRLNPLLFS R+ ++L H H K RFFAVAA EN+ T P+T F
Sbjct: 4 STPSLLSSCSAYRLNPLLFSHRRLRIRLSHSHL---KPRFFAVAARENDVFTSPETAKPF 60
Query: 64 DFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 123
DFTSEERIYNWW+SQGYFKPN +RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH
Sbjct: 61 DFTSEERIYNWWDSQGYFKPNLDRGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 120
Query: 124 RMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITS 183
RMKGRPTLW+PGTDHAGIATQLVVE+MLA+EGIKR ELSRDEFTKRVWEWKEKYGGTIT+
Sbjct: 121 RMKGRPTLWIPGTDHAGIATQLVVERMLASEGIKRAELSRDEFTKRVWEWKEKYGGTITN 180
Query: 184 QIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLE 243
QIKRLGASCDWTRE FTLDEQLSRAV+EAF+RLHE+GLIYQGSYMVNWSPNLQTAVSDLE
Sbjct: 181 QIKRLGASCDWTREHFTLDEQLSRAVIEAFVRLHERGLIYQGSYMVNWSPNLQTAVSDLE 240
Query: 244 VEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV 302
VEYSEEPGTLYYIKYRVAG S D+LTIATTRPETLFGD A+AV+PQD+ YS++IG MAIV
Sbjct: 241 VEYSEEPGTLYYIKYRVAGGSNDYLTIATTRPETLFGDTAIAVHPQDDRYSRYIGRMAIV 300
Query: 303 PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA 362
PMT+GRHVPIISD+YVDK+FGTGVLKI PGHDHNDYLLARKLGLPILNVMNKDGTLNEVA
Sbjct: 301 PMTFGRHVPIISDRYVDKDFGTGVLKIIPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA 360
Query: 363 GLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPL 422
GL+ G DRFEARKKLW DLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPL
Sbjct: 361 GLYCGFDRFEARKKLWLDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPL 420
Query: 423 AEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EEEY 480
AEKAL AV++GELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK EEEY
Sbjct: 421 AEKALQAVQRGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEEY 480
Query: 481 IVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPT 540
IVARNA+EALEKA +KYGK+VEIYQ+PDVLDTWFSSALWPFSTLGWPDVS DFKKFYPT
Sbjct: 481 IVARNANEALEKAQEKYGKDVEIYQEPDVLDTWFSSALWPFSTLGWPDVSTQDFKKFYPT 540
Query: 541 TMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDT 600
T+LETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQGRKMSKTLGNVIDPIDT
Sbjct: 541 TVLETGHDILFFWVARMVMMGIEFTGAVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPIDT 600
Query: 601 IKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWE 660
IKEFG DALRFT++LGTAGQDL+LS ERLT+NKAFTNKLWNAGKF+LQNLPSQ+DIS WE
Sbjct: 601 IKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDISAWE 660
Query: 661 ILLAYK 666
+LA K
Sbjct: 661 TILACK 666
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085363|emb|CBI29095.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1200 bits (3105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/671 (86%), Positives = 622/671 (92%), Gaps = 17/671 (2%)
Query: 10 SGPTLLSS---YRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLP---KTF 63
S P+LLSS YRLNPLLFS R ++L H H K RFFAVAA EN+ T P K+F
Sbjct: 4 STPSLLSSCSAYRLNPLLFSHRCLRIRLSHSHL---KPRFFAVAARENDVFTSPETAKSF 60
Query: 64 DFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 123
DFTSEERIYNWW+SQGYFKPN +RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH
Sbjct: 61 DFTSEERIYNWWDSQGYFKPNLDRGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 120
Query: 124 RMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITS 183
RMKGRPTLW+PGTDHAGIATQLVVE+MLA+EGIKR ELSRDEFTKRVWEWKEKYGGTIT+
Sbjct: 121 RMKGRPTLWIPGTDHAGIATQLVVERMLASEGIKRAELSRDEFTKRVWEWKEKYGGTITN 180
Query: 184 QIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLE 243
QIKRLGASCDWTRE FTLDE+LS AV+EAF+RLHE+GLIYQGSYMVNWSPNLQTAVSDLE
Sbjct: 181 QIKRLGASCDWTREHFTLDEKLSWAVIEAFVRLHERGLIYQGSYMVNWSPNLQTAVSDLE 240
Query: 244 VEYSEEPGTLYYIKYRVAG--RSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAI 301
VEYSEEPGTLYYIKYRVAG +SD+LTIATTRPETLFGD A+AV+PQD+ YS++IG MAI
Sbjct: 241 VEYSEEPGTLYYIKYRVAGGSKSDYLTIATTRPETLFGDTAIAVHPQDDRYSRYIGRMAI 300
Query: 302 VPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 361
VPMT+GRHVPIISD+YVDK+FGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV
Sbjct: 301 VPMTFGRHVPIISDRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 360
Query: 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 421
AGL+RGLDRFEARKKLW DLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP
Sbjct: 361 AGLYRGLDRFEARKKLWLDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 420
Query: 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EEE 479
LAEKAL AVE+GELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK EEE
Sbjct: 421 LAEKALQAVERGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEE 480
Query: 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539
YIVARNA+EALEKA +KYGK+VEIYQ+PDVLDTWFSSALWPFSTLGWPDVS DFKKFYP
Sbjct: 481 YIVARNANEALEKAQEKYGKDVEIYQEPDVLDTWFSSALWPFSTLGWPDVSTQDFKKFYP 540
Query: 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG----RKMSKTLGNVI 595
TT+LETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQ KMSKTLGNVI
Sbjct: 541 TTVLETGHDILFFWVARMVMMGIEFTGAVPFSYVYLHGLIRDSQASTMQEKMSKTLGNVI 600
Query: 596 DPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQND 655
DPIDTIKEFG DALRFT++LGTAGQDL+LS ERLT+NKAFTNKLWNAGKF+LQNLPSQ+D
Sbjct: 601 DPIDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSD 660
Query: 656 ISRWEILLAYK 666
IS WE +LA K
Sbjct: 661 ISAWETILACK 671
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580737|ref|XP_002531190.1| valyl-tRNA synthetase, putative [Ricinus communis] gi|223529231|gb|EEF31205.1| valyl-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1193 bits (3087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/676 (85%), Positives = 626/676 (92%), Gaps = 12/676 (1%)
Query: 1 MILQMSPFISGPTLLSS---YRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKD 57
M LQ+ +S P LLSS +RLNPL+FS+R+R + L +W F + RFFAVAA+EN
Sbjct: 1 MALQVG--LSSPFLLSSCSAHRLNPLIFSQRRRFIPLSNWRFYCQRPRFFAVAASENGVF 58
Query: 58 TLP---KTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVT 114
T P K+FDF+SEERIYNWWESQGYFKPNFERGSDPFVI MPPPNVTGSLHMGHAMFVT
Sbjct: 59 TSPEIAKSFDFSSEERIYNWWESQGYFKPNFERGSDPFVIPMPPPNVTGSLHMGHAMFVT 118
Query: 115 LEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174
LEDIMVRY+RMKGRPTLWLPGTDHAGIATQLVVEKMLA+EGIKR EL R+EF +RVWEWK
Sbjct: 119 LEDIMVRYNRMKGRPTLWLPGTDHAGIATQLVVEKMLASEGIKRTELGREEFVQRVWEWK 178
Query: 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPN 234
EKYGGTIT+QIKRLGASCDWTRE FTLDEQLSRAVVEAFIRLHEKGLIYQGSY+VNWSPN
Sbjct: 179 EKYGGTITNQIKRLGASCDWTREHFTLDEQLSRAVVEAFIRLHEKGLIYQGSYLVNWSPN 238
Query: 235 LQTAVSDLEVEYSEEPGTLYYIKYRVAG--RSDFLTIATTRPETLFGDVALAVNPQDEHY 292
LQTAVSDLEVEYSEEPGTLY+IKYRVAG R DFLT+ATTRPETLFGDVA+AV+P+D+ Y
Sbjct: 239 LQTAVSDLEVEYSEEPGTLYHIKYRVAGGSRGDFLTVATTRPETLFGDVAIAVHPKDDRY 298
Query: 293 SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 352
SQ+IG MAIVPMTYGRHVPIISD++VDK+FGTGVLKISPGHDHNDYLLARKLGLPILNVM
Sbjct: 299 SQYIGRMAIVPMTYGRHVPIISDRHVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVM 358
Query: 353 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVS 412
NKDGTLNEVAGL+ GLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGE+IEPLVS
Sbjct: 359 NKDGTLNEVAGLYCGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEIIEPLVS 418
Query: 413 KQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWY 472
KQWFVTMEPLAEKAL AVEKGEL I+PERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWY
Sbjct: 419 KQWFVTMEPLAEKALRAVEKGELNILPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWY 478
Query: 473 IVGK--EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS 530
I GK EE+YIVAR+ADEAL KAH+KYGK+V IYQDPDVLDTWFSSALWPFSTLGWPD S
Sbjct: 479 IDGKNCEEDYIVARDADEALAKAHEKYGKDVNIYQDPDVLDTWFSSALWPFSTLGWPDAS 538
Query: 531 ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKT 590
++DFKKFYPTTMLETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQGRKMSKT
Sbjct: 539 SEDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGTVPFSNVYLHGLIRDSQGRKMSKT 598
Query: 591 LGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNL 650
LGNVIDP+DTIK+FG DALRFT++LGTAGQDL+LS ERLTANKAFTNKLWNAGKFILQNL
Sbjct: 599 LGNVIDPLDTIKDFGTDALRFTLALGTAGQDLNLSTERLTANKAFTNKLWNAGKFILQNL 658
Query: 651 PSQNDISRWEILLAYK 666
P Q D S WE +LAY+
Sbjct: 659 PRQTDKSAWETVLAYE 674
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065184|ref|XP_002301705.1| predicted protein [Populus trichocarpa] gi|222843431|gb|EEE80978.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1179 bits (3050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/621 (89%), Positives = 596/621 (95%), Gaps = 5/621 (0%)
Query: 47 FAVAAAENNKDTLP---KTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTG 103
A AA EN T P K+FDF+SEERIYNWWESQG+FKP F+RGSDPFV+SMPPPNVTG
Sbjct: 21 IAAAATENGVFTSPENAKSFDFSSEERIYNWWESQGFFKPTFDRGSDPFVVSMPPPNVTG 80
Query: 104 SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSR 163
SLHMGHAMFVTLEDIMVRY+RMKGRPTLWLPGTDHAGIATQLVVEKMLA+EGIKR +LSR
Sbjct: 81 SLHMGHAMFVTLEDIMVRYNRMKGRPTLWLPGTDHAGIATQLVVEKMLASEGIKRTDLSR 140
Query: 164 DEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIY 223
DEFTKRVWEWKEKYGGTIT+QIKRLGASCDWTRERFTLDEQLS++V+EAFI+LHEKGLIY
Sbjct: 141 DEFTKRVWEWKEKYGGTITNQIKRLGASCDWTRERFTLDEQLSQSVIEAFIKLHEKGLIY 200
Query: 224 QGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVAL 283
QGSY+VNWSPNLQTAVSDLEVEYSEEPGTLY+IKYRVAG+SDFLT+ATTRPETLFGDVA+
Sbjct: 201 QGSYLVNWSPNLQTAVSDLEVEYSEEPGTLYHIKYRVAGQSDFLTVATTRPETLFGDVAI 260
Query: 284 AVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK 343
AVNP+D+ YS+FIG MAIVPMTYGRHVPII+D++VDK+FGTGVLKISPGHDHNDY LARK
Sbjct: 261 AVNPKDDRYSKFIGKMAIVPMTYGRHVPIIADRHVDKDFGTGVLKISPGHDHNDYYLARK 320
Query: 344 LGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRG 403
LGLPILNVMNKDGTLNEVAGL+ GLDRFEARKKLWS+LEETGLA+KKEPHTLRVPRSQRG
Sbjct: 321 LGLPILNVMNKDGTLNEVAGLYCGLDRFEARKKLWSELEETGLAIKKEPHTLRVPRSQRG 380
Query: 404 GEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLW 463
GE+IEPLVSKQWFVTMEPLAEKAL AVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLW
Sbjct: 381 GEIIEPLVSKQWFVTMEPLAEKALRAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLW 440
Query: 464 WGHRIPVWYIVGK--EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPF 521
WGHRIPVWYIVGK EE+YIVARNADEALEKA +KYGKNVEIYQDPDVLDTWFSSALWPF
Sbjct: 441 WGHRIPVWYIVGKNCEEDYIVARNADEALEKAREKYGKNVEIYQDPDVLDTWFSSALWPF 500
Query: 522 STLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRD 581
STLGWPDVSA+DFKKFYPTTMLETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRD
Sbjct: 501 STLGWPDVSAEDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRD 560
Query: 582 SQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWN 641
SQGRKMSKTLGNVIDP+DTIKEFG DALRFTISLGTAGQDL+LS ERLTANKAFTNKLWN
Sbjct: 561 SQGRKMSKTLGNVIDPLDTIKEFGTDALRFTISLGTAGQDLNLSTERLTANKAFTNKLWN 620
Query: 642 AGKFILQNLPSQNDISRWEIL 662
AGKF+LQN+PSQ D+S WE +
Sbjct: 621 AGKFVLQNMPSQTDVSAWEAI 641
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563701|ref|XP_003550098.1| PREDICTED: valyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1159 bits (2998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/659 (84%), Positives = 608/659 (92%), Gaps = 12/659 (1%)
Query: 15 LSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAE--NNKDTLP---KTFDFTSEE 69
SS R NPLLF R R ++ +R AVAA+E N T P K+FDF +EE
Sbjct: 21 FSSSR-NPLLFFTRCRRRRIAL----SCTRRHLAVAASERENGVFTSPEVAKSFDFAAEE 75
Query: 70 RIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRP 129
RIYNWWESQGYF+P+F+RGSDPFVI MPPPNVTGSLHMGHAMFVTLEDIM+RY+RMKGRP
Sbjct: 76 RIYNWWESQGYFRPSFDRGSDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMIRYNRMKGRP 135
Query: 130 TLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLG 189
TLWLPGTDHAGIATQLVVE+MLA+EG+KR ELSRDEFTKRVW+WKEKYGGTI +QIKRLG
Sbjct: 136 TLWLPGTDHAGIATQLVVERMLASEGVKRTELSRDEFTKRVWQWKEKYGGTIANQIKRLG 195
Query: 190 ASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249
ASCDW+RE FTLDEQLS+AVVEAF+RLHEKGLIYQGSYMVNWSP LQTAVSDLEVEYSEE
Sbjct: 196 ASCDWSREHFTLDEQLSQAVVEAFVRLHEKGLIYQGSYMVNWSPTLQTAVSDLEVEYSEE 255
Query: 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRH 309
G LY+IKYRVAGRSDFLT+ATTRPETLFGDVALAV+P+D+ YS++IGMMAIVP T+GRH
Sbjct: 256 SGYLYHIKYRVAGRSDFLTVATTRPETLFGDVALAVHPKDDRYSKYIGMMAIVPQTFGRH 315
Query: 310 VPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLD 369
VPII+DK+VD+EFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLN+VAGL+ GLD
Sbjct: 316 VPIIADKHVDREFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNDVAGLYSGLD 375
Query: 370 RFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHA 429
RFEARKKLW++LEET LAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKAL A
Sbjct: 376 RFEARKKLWAELEETRLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALQA 435
Query: 430 VEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EEEYIVARNAD 487
VEKGELTI+PERF+KIYNHWLSNIKDWCISRQLWWGHRIPVWYI GK EE+YIVARNA
Sbjct: 436 VEKGELTIIPERFQKIYNHWLSNIKDWCISRQLWWGHRIPVWYIAGKENEEDYIVARNAK 495
Query: 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGH 547
EALEKAH+KYGK+VEIYQDPDVLDTWFSSALWPFSTLGWPD+ A+DFK+FYPTTMLETGH
Sbjct: 496 EALEKAHKKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDLCAEDFKRFYPTTMLETGH 555
Query: 548 DILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGAD 607
DILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQGRKMSKTLGNVIDP+DTIKEFG D
Sbjct: 556 DILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTD 615
Query: 608 ALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYK 666
ALRFT++LGTAGQDL+LS ERLT+NKAFTNKLWNAGKFILQNLP++ND S WE +L+YK
Sbjct: 616 ALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFILQNLPNENDTSAWEEILSYK 674
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456259|ref|XP_004145867.1| PREDICTED: valine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1140 bits (2948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/634 (85%), Positives = 595/634 (93%), Gaps = 10/634 (1%)
Query: 47 FAVAAAENNKDTLP---KTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTG 103
F+VAA+ N T P KTFDF SEERIY WWESQGYF+P+ ++ + PFVISMPPPNVTG
Sbjct: 3 FSVAASANGVFTSPEIAKTFDFASEERIYKWWESQGYFRPHHDQDTVPFVISMPPPNVTG 62
Query: 104 SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSR 163
SLHMGHAMFVTLEDIMVRY+RMKGRPTLWLPGTDHAGIATQLVVE+MLA+EGIKRVEL R
Sbjct: 63 SLHMGHAMFVTLEDIMVRYNRMKGRPTLWLPGTDHAGIATQLVVERMLASEGIKRVELGR 122
Query: 164 DEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIY 223
DEFTKRVWEWKEKYGGTIT+QIKRLGASCDWT+E FTLD+QLSRAV+EAF+RLHE+GLIY
Sbjct: 123 DEFTKRVWEWKEKYGGTITNQIKRLGASCDWTKEHFTLDDQLSRAVIEAFVRLHERGLIY 182
Query: 224 QGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG-RSDFLTIATTRPETLFGDVA 282
QGSYMVNWSPNLQTAVSDLEVEYSEE GTLY+IKYRVAG SD+LT+ATTRPETLFGDVA
Sbjct: 183 QGSYMVNWSPNLQTAVSDLEVEYSEESGTLYHIKYRVAGGSSDYLTVATTRPETLFGDVA 242
Query: 283 LAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLAR 342
+AV+PQD+ YS+++GMMAIVPMTYGRHVPIISDK VDK+FGTGVLKISPGHDHNDYLLAR
Sbjct: 243 IAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDKNVDKDFGTGVLKISPGHDHNDYLLAR 302
Query: 343 KLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQR 402
KLGLPILNVMNKDGTLN+VAGL+ GLDRFEARKKLW+DLEETGLAVKKE HTLRVPRSQR
Sbjct: 303 KLGLPILNVMNKDGTLNKVAGLYCGLDRFEARKKLWADLEETGLAVKKEAHTLRVPRSQR 362
Query: 403 GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQL 462
GGE+IEPLVSKQWFVTMEPLAEKAL AVEKGELTI+PERFEKIYNHWLSNIKDWCISRQL
Sbjct: 363 GGEIIEPLVSKQWFVTMEPLAEKALRAVEKGELTIIPERFEKIYNHWLSNIKDWCISRQL 422
Query: 463 WWGHRIPVWYIVGK--EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWP 520
WWGHRIPVWYIVG+ EE+YIVARNADEALE+A +KYGK VEIYQDPDVLDTWFSSALWP
Sbjct: 423 WWGHRIPVWYIVGRNPEEDYIVARNADEALEQAQKKYGKGVEIYQDPDVLDTWFSSALWP 482
Query: 521 FSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIR 580
FSTLGWPD +A+DFK+FYPTTMLETGHDILFFWVARMVMMGIEFTG+VPFS++YLHGLIR
Sbjct: 483 FSTLGWPDETAEDFKRFYPTTMLETGHDILFFWVARMVMMGIEFTGTVPFSYIYLHGLIR 542
Query: 581 DSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLW 640
DSQGRKMSKTLGNVIDP+DTIKEFG DALRFT++LGTAGQDL+LS ERLT+NKAFTNKLW
Sbjct: 543 DSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLW 602
Query: 641 NAGKFILQNLPSQNDISRWEILLAYKV----CVL 670
NAGKFILQNLP+QND W+ +L+++ C+L
Sbjct: 603 NAGKFILQNLPTQNDSQSWDSILSFEFEKDDCLL 636
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334187718|ref|NP_568337.4| valyl-tRNA synthetase [Arabidopsis thaliana] gi|332004946|gb|AED92329.1| valyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1130 bits (2924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/632 (84%), Positives = 587/632 (92%), Gaps = 6/632 (0%)
Query: 42 TKQRF-FAVAAAENNKDTLP---KTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMP 97
+++RF F+ AA+ NN T P KTFDF+SEE+IY WWESQGYFKPNF++G PFVI MP
Sbjct: 48 SQRRFSFSAAASGNNVFTSPETSKTFDFSSEEKIYKWWESQGYFKPNFDQGGSPFVIPMP 107
Query: 98 PPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK 157
PPNVTGSLHMGHAMFVTLEDIMVRY+RM GRPTLWLPGTDHAGIATQLVVEKMLA+EGIK
Sbjct: 108 PPNVTGSLHMGHAMFVTLEDIMVRYNRMNGRPTLWLPGTDHAGIATQLVVEKMLASEGIK 167
Query: 158 RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217
RV+L RDEFTKRVWEWKEKYGGTIT+QIKRLGASCDW+RERFTLDEQLSRAVVEAF++LH
Sbjct: 168 RVDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVKLH 227
Query: 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETL 277
+KGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG LY+IKYRVAG DFLTIATTRPETL
Sbjct: 228 DKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGFLYHIKYRVAGSPDFLTIATTRPETL 287
Query: 278 FGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHND 337
FGDVALAV+P+D+ YS+++G AIVPMTYGRHVPII+DKYVDK+FGTGVLKISPGHDHND
Sbjct: 288 FGDVALAVHPEDDRYSKYVGQTAIVPMTYGRHVPIIADKYVDKDFGTGVLKISPGHDHND 347
Query: 338 YLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRV 397
YLLARKLGLPILNVMNKD TLN+VAGLF GLDRFE R+KLW+DLEE GLAVKKEPHTLRV
Sbjct: 348 YLLARKLGLPILNVMNKDATLNDVAGLFCGLDRFEVREKLWADLEEIGLAVKKEPHTLRV 407
Query: 398 PRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457
PRSQRGGEVIEPLVSKQWFV M+PLAEKAL AVE ELTI+PERFEKIYNHWL+NIKDWC
Sbjct: 408 PRSQRGGEVIEPLVSKQWFVHMDPLAEKALLAVENKELTIIPERFEKIYNHWLTNIKDWC 467
Query: 458 ISRQLWWGHRIPVWYIVGK--EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFS 515
ISRQLWWGHRIPVWY+VGK EE+YIVA++A+EALEKA +KYGK+VEIYQDPDVLDTWFS
Sbjct: 468 ISRQLWWGHRIPVWYVVGKDCEEDYIVAKSAEEALEKALEKYGKDVEIYQDPDVLDTWFS 527
Query: 516 SALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYL 575
S+LWPFSTLGWPDV+A DF FYPT MLETGHDILFFWVARMVMMGIEFTG+VPFSHVYL
Sbjct: 528 SSLWPFSTLGWPDVAAKDFNNFYPTNMLETGHDILFFWVARMVMMGIEFTGTVPFSHVYL 587
Query: 576 HGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAF 635
HGLIRDSQGRKMSK+LGNVIDP+DTIK+FG DALRFTI+LGTAGQDL+LS ERLTANKAF
Sbjct: 588 HGLIRDSQGRKMSKSLGNVIDPLDTIKDFGTDALRFTIALGTAGQDLNLSTERLTANKAF 647
Query: 636 TNKLWNAGKFILQNLPSQNDISRWEILLAYKV 667
TNKLWNAGKF+L +LPS +D S WE LL K+
Sbjct: 648 TNKLWNAGKFVLHSLPSLSDTSAWENLLDLKL 679
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218199135|gb|EEC81562.1| hypothetical protein OsI_25003 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 1128 bits (2917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/656 (81%), Positives = 601/656 (91%), Gaps = 12/656 (1%)
Query: 19 RLNPLLFSKRQRCMKLPHWH-FNRTKQRFFAVAAAENNKDTLP---KTFDFTSEERIYNW 74
RLNPLLFS +R P W ++ A A+E + T P K+FDFT+EERIY W
Sbjct: 14 RLNPLLFSAHRR----PAWTPRRAARRFCAAAVASERDVFTSPEVAKSFDFTNEERIYKW 69
Query: 75 WESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134
WESQG+FKPNF+RG DPFVI MPPPNVTGSLHMGHAMFVTLEDIMVRY RMKGRP LWLP
Sbjct: 70 WESQGFFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYFRMKGRPALWLP 129
Query: 135 GTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDW 194
GTDHAGIATQLVVEKMLAAEGIKR +L+R+EFTKRVWEWKEKYG TIT+QIKRLGASCDW
Sbjct: 130 GTDHAGIATQLVVEKMLAAEGIKRTDLTREEFTKRVWEWKEKYGSTITNQIKRLGASCDW 189
Query: 195 TRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLY 254
+RERFTLDEQLSRAV+EAF+RLHEKGLIYQGSY+VNWSPNLQTAVSDLEVEYSEEPG LY
Sbjct: 190 SRERFTLDEQLSRAVIEAFVRLHEKGLIYQGSYLVNWSPNLQTAVSDLEVEYSEEPGNLY 249
Query: 255 YIKYRVAG--RSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPI 312
+IKYRVAG R DF+TIATTRPETLFGDVA+AVNP+DE Y++++G +AIVP+T+GRHVPI
Sbjct: 250 FIKYRVAGGSRDDFMTIATTRPETLFGDVAIAVNPEDERYAKYVGKLAIVPLTFGRHVPI 309
Query: 313 ISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFE 372
I+D+YVD EFGTGVLKISPGHDHNDY +ARKLGLPILNVMNKDGTLN+VAGL+ G+DRFE
Sbjct: 310 IADRYVDPEFGTGVLKISPGHDHNDYHIARKLGLPILNVMNKDGTLNDVAGLYSGMDRFE 369
Query: 373 ARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEK 432
AR+KLWSDL ET LAVKKEP+TLRVPRSQRGGEVIEPL+SKQWFVTM+PLAEKALHAVEK
Sbjct: 370 AREKLWSDLVETNLAVKKEPYTLRVPRSQRGGEVIEPLISKQWFVTMDPLAEKALHAVEK 429
Query: 433 GELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EEEYIVARNADEAL 490
G+LTI+PERFEKIYNHWL+NIKDWCISRQLWWGHRIPVWYIVGK EE+YIVAR+A+EAL
Sbjct: 430 GQLTILPERFEKIYNHWLTNIKDWCISRQLWWGHRIPVWYIVGKKCEEDYIVARSAEEAL 489
Query: 491 EKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDIL 550
KA +KYGK+VEIYQDPDVLDTWFSSALWPFSTLGWPD+S++DFK FYP T+LETGHDIL
Sbjct: 490 AKAQEKYGKSVEIYQDPDVLDTWFSSALWPFSTLGWPDLSSEDFKHFYPATVLETGHDIL 549
Query: 551 FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR 610
FFWVARMVMMGIEFTG+VPFS+VYLHGLIRDS+GRKMSKTLGNVIDP+DTIKE+G DALR
Sbjct: 550 FFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSEGRKMSKTLGNVIDPLDTIKEYGTDALR 609
Query: 611 FTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYK 666
FT+S+GTAGQDL+LS ERLT+NKAFTNKLWNAGKF+LQNLP ++D + W++LLA K
Sbjct: 610 FTLSMGTAGQDLNLSTERLTSNKAFTNKLWNAGKFLLQNLPDRSDATAWDVLLANK 665
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222636480|gb|EEE66612.1| hypothetical protein OsJ_23192 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1123 bits (2904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/658 (81%), Positives = 601/658 (91%), Gaps = 14/658 (2%)
Query: 19 RLNPLLFSKRQRCMKLPHWH-FNRTKQRFFAVAAAENNKDTLP---KTFDFTSEERIYNW 74
RLNPLLFS +R P W ++ A A+E + T P K+FDFT+EERIY W
Sbjct: 14 RLNPLLFSAHRR----PAWTPRRAARRFCAAAVASERDVFTSPEVAKSFDFTNEERIYKW 69
Query: 75 WESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTL--EDIMVRYHRMKGRPTLW 132
WESQG+FKPNF+RG DPFVI MPPPNVTGSLHMGHAMFVTL +DIMVRY RMKGRP LW
Sbjct: 70 WESQGFFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLSTQDIMVRYFRMKGRPALW 129
Query: 133 LPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASC 192
LPGTDHAGIATQLVVEKMLAAEGIKR +L+R+EFTKRVWEWKEKYG TIT+QIKRLGASC
Sbjct: 130 LPGTDHAGIATQLVVEKMLAAEGIKRTDLTREEFTKRVWEWKEKYGSTITNQIKRLGASC 189
Query: 193 DWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGT 252
DW+RERFTLDEQLSRAV+EAF+RLHEKGLIYQGSY+VNWSPNLQTAVSDLEVEYSEEPG
Sbjct: 190 DWSRERFTLDEQLSRAVIEAFVRLHEKGLIYQGSYLVNWSPNLQTAVSDLEVEYSEEPGN 249
Query: 253 LYYIKYRVAG--RSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHV 310
LY+IKYRVAG R DF+TIATTRPETLFGDVA+AVNP+DE Y++++G +AIVP+T+GRHV
Sbjct: 250 LYFIKYRVAGGSRDDFMTIATTRPETLFGDVAIAVNPEDERYAKYVGKLAIVPLTFGRHV 309
Query: 311 PIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDR 370
PII+D+YVD EFGTGVLKISPGHDHNDY +ARKLGLPILNVMNKDGTLN+VAGL+ G+DR
Sbjct: 310 PIIADRYVDPEFGTGVLKISPGHDHNDYHIARKLGLPILNVMNKDGTLNDVAGLYSGMDR 369
Query: 371 FEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAV 430
FEAR+KLWSDL ET LAVKKEP+TLRVPRSQRGGEVIEPL+SKQWFVTM+PLAEKALHAV
Sbjct: 370 FEAREKLWSDLVETNLAVKKEPYTLRVPRSQRGGEVIEPLISKQWFVTMDPLAEKALHAV 429
Query: 431 EKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EEEYIVARNADE 488
EKG+LTI+PERFEKIYNHWL+NIKDWCISRQLWWGHRIPVWYIVGK EE+YIVAR+A+E
Sbjct: 430 EKGQLTILPERFEKIYNHWLTNIKDWCISRQLWWGHRIPVWYIVGKKCEEDYIVARSAEE 489
Query: 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHD 548
AL KA +KYGK+VEIYQDPDVLDTWFSSALWPFSTLGWPD+S++DFK FYP T+LETGHD
Sbjct: 490 ALAKAQEKYGKSVEIYQDPDVLDTWFSSALWPFSTLGWPDLSSEDFKHFYPATVLETGHD 549
Query: 549 ILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADA 608
ILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDS+GRKMSKTLGNVIDP+DTIKE+G DA
Sbjct: 550 ILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSEGRKMSKTLGNVIDPLDTIKEYGTDA 609
Query: 609 LRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYK 666
LRFT+S+GTAGQDL+LS ERLT+NKAFTNKLWNAGKF+LQNLP ++D + W++LLA K
Sbjct: 610 LRFTLSMGTAGQDLNLSTERLTSNKAFTNKLWNAGKFLLQNLPDRSDATAWDVLLANK 667
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 674 | ||||||
| TIGR_CMR|CBU_0808 | 920 | CBU_0808 "valyl-tRNA synthetas | 0.854 | 0.626 | 0.548 | 2.9e-183 | |
| TIGR_CMR|CHY_0334 | 878 | CHY_0334 "valyl-tRNA synthetas | 0.884 | 0.678 | 0.541 | 4.5e-178 | |
| TIGR_CMR|BA_4690 | 881 | BA_4690 "valyl-tRNA synthetase | 0.867 | 0.664 | 0.517 | 1.7e-171 | |
| TIGR_CMR|DET_0430 | 880 | DET_0430 "valyl-tRNA synthetas | 0.859 | 0.657 | 0.522 | 8.2e-170 | |
| TIGR_CMR|GSU_2045 | 887 | GSU_2045 "valyl-tRNA synthetas | 0.866 | 0.658 | 0.519 | 4.5e-169 | |
| UNIPROTKB|E1BLV6 | 1001 | VARS "Uncharacterized protein" | 0.525 | 0.353 | 0.478 | 3e-154 | |
| TIGR_CMR|SO_3424 | 958 | SO_3424 "valyl-tRNA synthetase | 0.449 | 0.316 | 0.516 | 1.2e-153 | |
| UNIPROTKB|E2RTJ7 | 1264 | VARS "Uncharacterized protein" | 0.525 | 0.280 | 0.481 | 1.8e-153 | |
| CGD|CAL0003105 | 1119 | VAS1 [Candida albicans (taxid: | 0.540 | 0.325 | 0.465 | 5.4e-153 | |
| UNIPROTKB|H0Y4A6 | 1183 | VARS "Valine--tRNA ligase" [Ho | 0.525 | 0.299 | 0.475 | 8.8e-153 |
| TIGR_CMR|CBU_0808 CBU_0808 "valyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1680 (596.4 bits), Expect = 2.9e-183, Sum P(2) = 2.9e-183
Identities = 322/587 (54%), Positives = 421/587 (71%)
Query: 59 LPKTFDFTSEERIY-NWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
+ KT+D + E+ + ++WE + KP + GS P+ I +PPPNVTG+LHMGH TL D
Sbjct: 1 MEKTYDPKAIEKKWADYWEKRQLSKPTAQ-GS-PYCIMLPPPNVTGTLHMGHGFQQTLMD 58
Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
++RYHRMKG TLW GTDHAGIATQ+VVE+ LA E + R +L R F KRVWEW+E+
Sbjct: 59 TLIRYHRMKGERTLWQGGTDHAGIATQMVVEQQLAQEDLTREDLGRQAFIKRVWEWRERS 118
Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
GG IT Q++RLG S DW+RERF++DE LSRA EAFIRLH +GLIY+G +VNW P L T
Sbjct: 119 GGKITHQMRRLGVSIDWSRERFSMDEGLSRATTEAFIRLHHEGLIYRGKRLVNWDPKLNT 178
Query: 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297
A+SDLEV E G L++I+Y +A S L IATTRPETL GDVA+AV+PQDE Y F+G
Sbjct: 179 AISDLEVVTEEVEGHLWHIRYPLAEGSGHLIIATTRPETLLGDVAIAVHPQDERYQPFVG 238
Query: 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357
+P+T R +P+I+D+ VDKEFGTG LKI+PGHD NDY + ++ LP++N++ +G
Sbjct: 239 KKVRLPLT-DRTIPVIADEAVDKEFGTGSLKITPGHDFNDYEIGQRHQLPLINILTSEGY 297
Query: 358 LNE-VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
LNE V +RGL+RFEARKK+ +DL+ L K EP+ + VPR +R G +IEPL++ QWF
Sbjct: 298 LNENVPEPYRGLERFEARKKIIADLQRENLLEKTEPYRVPVPRGERSGVIIEPLLTDQWF 357
Query: 417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
+ ME LA+ A+ AVE GEL +P+ +EK Y WLSNI+DWCISRQLWWGHR+PVWY +
Sbjct: 358 IKMEALAKPAMEAVESGELKFIPKNWEKTYLQWLSNIQDWCISRQLWWGHRLPVWY--DE 415
Query: 477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536
E+ V R+ +E L+K H +V++ Q+ DVLDTWFS++LWPF+TLGWP+ + FK
Sbjct: 416 EKNSYVGRSREEILKKYH--LSPDVKLQQETDVLDTWFSASLWPFATLGWPE-KTESFKT 472
Query: 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596
FYPT +L TG DI+FFWVARMVMMG++ T +PF VY+HGLIRDSQGRKMSK+ GNVID
Sbjct: 473 FYPTQVLVTGFDIIFFWVARMVMMGLKLTHKIPFHSVYIHGLIRDSQGRKMSKSKGNVID 532
Query: 597 PIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAG 643
PID I DAL + ++ +IE++T K F N + + G
Sbjct: 533 PIDIIDGISLDALIEKRTHALLQPKMAKTIEKMT-RKEFPNGIASFG 578
|
|
| TIGR_CMR|CHY_0334 CHY_0334 "valyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1729 (613.7 bits), Expect = 4.5e-178, P = 4.5e-178
Identities = 332/613 (54%), Positives = 431/613 (70%)
Query: 58 TLPKTFDFTSEERI-YNWWESQGYF--KPNFERGSDPFVISMPPPNVTGSLHMGHAMFVT 114
TLP + ER Y +WE G+F +P+ ER +PF I MPPPNVTG LHMGHA+ T
Sbjct: 4 TLPSVYSPQEVERKWYKYWEENGFFHTEPD-ER--EPFCIVMPPPNVTGQLHMGHALDNT 60
Query: 115 LEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174
++DI+ RY RM+G TLWLPGTDHAGIATQ VE+ L EG+ + +L R++F +RVW WK
Sbjct: 61 MQDILARYKRMQGFNTLWLPGTDHAGIATQAKVEEELRKEGLTKDDLGREKFLERVWAWK 120
Query: 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPN 234
E YG IT Q++ LGASCDW RERFTLDE S AV E F+RL+EKGLIY+ Y+ NW P+
Sbjct: 121 ENYGNRITEQLRTLGASCDWKRERFTLDEGCSEAVKEVFLRLYEKGLIYRDYYITNWCPH 180
Query: 235 LQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ 294
+T +SD+EVE+ E G LYYI Y + S +LT+ATTRPET+ GD A+AV+P+DE Y +
Sbjct: 181 CKTTISDIEVEHLEREGKLYYINYPLEDGSGYLTVATTRPETMLGDTAVAVHPEDERYRE 240
Query: 295 FIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK 354
IG I+P+ R +P+I+D+YVDKEFGTG +KI+P HD ND+ + + LP + V++
Sbjct: 241 LIGKNVILPLV-NRPIPVIADEYVDKEFGTGAVKITPAHDPNDFEVGLRHKLPQVVVLDD 299
Query: 355 DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQ 414
D +NE AG +RGLDR+EARKK+ DL++ GL VK+E T V R VIEP +SKQ
Sbjct: 300 DAVMNENAGKYRGLDRYEARKKIVEDLKDLGLLVKEEEITHSVGHCYRCDTVIEPRLSKQ 359
Query: 415 WFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV 474
WFV M+PLAE A+ A G++ +PERF KIY +WL NI+DWCISRQLWWGHRIPVWY
Sbjct: 360 WFVKMKPLAEPAIEAALTGKVKFVPERFTKIYLNWLYNIRDWCISRQLWWGHRIPVWYC- 418
Query: 475 GKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDF 534
+ E I +R ++ K ++ +++QDPDVLDTWFSSALWPFSTLGWP + ++
Sbjct: 419 DECGEVIPSREEVKSCPKC-----QSTKVHQDPDVLDTWFSSALWPFSTLGWPQ-NTEEL 472
Query: 535 KKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNV 594
K +YPT++L TG DI+FFWVARM+ MG+EF VPF V +HGL+ D+QGRKMSK+LGN
Sbjct: 473 KYYYPTSVLVTGRDIIFFWVARMLFMGLEFMKEVPFKEVLIHGLVLDAQGRKMSKSLGNG 532
Query: 595 IDPIDTIKEFGADALRFTISLG-TAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLP-- 651
+DP++ I GAD+LRF + G T G DL ERL + F NKLWNA +F+L NL
Sbjct: 533 VDPVEVIASHGADSLRFMLVTGNTPGNDLRFHFERLDGARNFANKLWNASRFVLMNLEGF 592
Query: 652 SQNDISRWEILLA 664
+ I + E+ LA
Sbjct: 593 TPQGIKQEELTLA 605
|
|
| TIGR_CMR|BA_4690 BA_4690 "valyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1667 (591.9 bits), Expect = 1.7e-171, P = 1.7e-171
Identities = 311/601 (51%), Positives = 412/601 (68%)
Query: 54 NNKDTLPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMF 112
N + LP +D S EE +Y WW YF+ + P+ I +PPPNVTG LH+GHA
Sbjct: 3 NTEKNLPTKYDHMSVEEGLYQWWLEGKYFEATGDEKKQPYTIVIPPPNVTGKLHLGHAWD 62
Query: 113 VTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172
TL+DI+ R RM+G LWLPG DHAGIATQ VE L EGI R +L R++F ++ WE
Sbjct: 63 TTLQDILTRTKRMQGYDVLWLPGMDHAGIATQAKVEGKLREEGISRYDLGREKFLEKAWE 122
Query: 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWS 232
WKE+Y I Q ++G D++RERFTLD+ LS AV + F++L+EKGLIY+G Y++NW
Sbjct: 123 WKEEYASHIRQQWGKVGLGLDYSRERFTLDKGLSDAVNKVFVQLYEKGLIYRGEYIINWD 182
Query: 233 PNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHY 292
P +TA+SD+EV + E G Y++ Y + S + +ATTRPET+ GD A+AV+P+D+ Y
Sbjct: 183 PATRTALSDIEVIHKEVQGAFYHMNYPLTDGSGHIRLATTRPETMLGDTAVAVHPEDDRY 242
Query: 293 SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 352
IG +P+ GR +PII+D+YV+K+FGTGV+KI+P HD ND+ + + LP + VM
Sbjct: 243 KHLIGKTVTLPIV-GREIPIIADEYVEKDFGTGVVKITPAHDPNDFEVGNRHDLPRILVM 301
Query: 353 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVS 412
N+DG++NE AG + G+DRFE RK L DL+E G+ V+ EPH V S+R G V+EP +S
Sbjct: 302 NEDGSMNEKAGKYNGMDRFECRKALVKDLQEAGVLVEIEPHMHSVGHSERSGAVVEPYLS 361
Query: 413 KQWFVTMEPLAEKALHAVEKGE--LTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV 470
QWFV M PLAEKA+ +K E +T +P+RFE Y W+ NI DWCISRQLWWGHRIP
Sbjct: 362 TQWFVKMAPLAEKAIELQQKEEEKVTFVPDRFENTYLRWMENIHDWCISRQLWWGHRIPA 421
Query: 471 WYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS 530
WY E Y V A +E +Q D DVLDTWFSSALWPFSTLGWP+
Sbjct: 422 WYHKETGEVY-VGTEAPADIENWNQ----------DNDVLDTWFSSALWPFSTLGWPNED 470
Query: 531 ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKT 590
A DFK++Y T L TG+DI+FFWV+RM+ G+EFTG PF V +HGL+RD QGRKMSK+
Sbjct: 471 AADFKRYYSTDALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKS 530
Query: 591 LGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQN 649
LGN IDP+D I+++GADA+RF +S G+A GQDL S+E++ + F NK+WNA +F+L N
Sbjct: 531 LGNGIDPMDVIEKYGADAMRFFLSTGSAPGQDLRFSMEKVESTWNFINKIWNASRFVLMN 590
Query: 650 L 650
+
Sbjct: 591 M 591
|
|
| TIGR_CMR|DET_0430 DET_0430 "valyl-tRNA synthetase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 1651 (586.2 bits), Expect = 8.2e-170, P = 8.2e-170
Identities = 309/591 (52%), Positives = 408/591 (69%)
Query: 68 EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKG 127
E++ Y +W +GYFKPN + PFVI MPPPNVTG LH+GHA+ TLEDIM+R+HRM G
Sbjct: 20 EKKWYQYWMEKGYFKPNPDSDKKPFVIIMPPPNVTGELHLGHALTATLEDIMIRWHRMLG 79
Query: 128 RPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKR 187
P LWLPG DHAGIA Q+VVE+MLA +G R EL R+ F +++WEW I Q R
Sbjct: 80 EPALWLPGADHAGIAAQVVVERMLAKQGKTRQELGRELFLEKMWEWVNPCRERIRHQHMR 139
Query: 188 LGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247
LGASCDW RE FTLD +AV E F L++KGLIY+G ++NW P TAVSDLEV++
Sbjct: 140 LGASCDWDRETFTLDPGPVKAVREIFTNLYQKGLIYRGERIINWCPRCATAVSDLEVDHK 199
Query: 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYG 307
+ G +++++Y + S F+T+ATTRPET+ GD A+AV+P D Y+ +G ++P+
Sbjct: 200 DLAGHIWHLRYPLEDGSGFVTVATTRPETMLGDTAVAVHPDDARYTGMVGKNVLLPIM-N 258
Query: 308 RHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRG 367
R +P+I+D+ VD FGTG +K++P HD ND+ + + LP++ + N+D T+NE AG G
Sbjct: 259 RRIPVIADEAVDMAFGTGAVKVTPAHDPNDFEMGLRHSLPMITIQNRDTTMNENAGPCSG 318
Query: 368 LDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKAL 427
+ R+ + S+L+ GL +K E +T V QR VIEP+VSKQWFV MEPLA+ AL
Sbjct: 319 MTAKACREYVVSELKSLGLLLKIEDYTHSVGHCQRCSAVIEPMVSKQWFVKMEPLAKPAL 378
Query: 428 HAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYI-VGKEEEYIVARNA 486
AV G + I+PERF K+Y +W+ NI+DWCISRQLWWGHRIPVWY G E IV++
Sbjct: 379 EAVNSGRIQILPERFTKVYQNWMENIRDWCISRQLWWGHRIPVWYCPCG---EMIVSKED 435
Query: 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETG 546
A K G + ++ QDPDVLDTWFSS LWP STLGWPD +D K+FYP ++LET
Sbjct: 436 PTACPKC----G-STKLEQDPDVLDTWFSSGLWPHSTLGWPD-QTEDLKRFYPGSVLETA 489
Query: 547 HDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGA 606
+DI+FFWVARM++MGIE VPF VYLHGLIRD +G KMSKT GNVIDP+ I ++G
Sbjct: 490 YDIIFFWVARMIVMGIEDMKEVPFRTVYLHGLIRDDKGEKMSKTKGNVIDPLKVIDQYGT 549
Query: 607 DALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDI 656
DALRF ++ GT+ G D L +L A + F NKLWNA +F++ NL + ++
Sbjct: 550 DALRFAVTFGTSPGNDSKLGQTKLEAARNFVNKLWNASRFVIMNLGEEKEL 600
|
|
| TIGR_CMR|GSU_2045 GSU_2045 "valyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1644 (583.8 bits), Expect = 4.5e-169, P = 4.5e-169
Identities = 309/595 (51%), Positives = 414/595 (69%)
Query: 59 LPKTFDFTSEERI-YNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
L K ++ T+ ER Y WE +GYF+ N + G + I +PPPNVTG+LHMGHA+ TL+D
Sbjct: 6 LAKVYEPTAVERKWYETWEQEGYFRANPDSGKPSYSIVIPPPNVTGALHMGHALNNTLQD 65
Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
I+ R+ RM G LW+PGTDHAGIATQ VVE+ LA EG R EL R+ F +RVW+WK +
Sbjct: 66 ILCRWKRMNGYEVLWMPGTDHAGIATQNVVERQLAGEGTSRHELGREAFIERVWKWKAES 125
Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
GG I Q+KRLGASCDW RERFT+DE LSRAV E F+RL+E+GLIY+ + ++NW P T
Sbjct: 126 GGQIIGQLKRLGASCDWGRERFTMDEGLSRAVREVFVRLYEEGLIYRDNRLINWCPRCHT 185
Query: 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSD-FLTIATTRPETLFGDVALAVNPQDEHYSQFI 296
A+SD+EVE+ ++ G L++I+Y V G F+ +ATTRPET+ GD A+AV+P+DE Y+ +
Sbjct: 186 ALSDIEVEHEDKAGNLWHIRYPVVGEPGRFVVVATTRPETMLGDTAVAVHPEDERYADLV 245
Query: 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG 356
G ++P+ R +P+++D YVD+EFGTGV+KI+P HD ND+ + R+ L +LNV ++
Sbjct: 246 GKKVLLPLV-NREIPVVADGYVDREFGTGVVKITPAHDFNDFEVGRRHNLDLLNVFDESA 304
Query: 357 TLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
+N + G++RF ARK++ DLE GL K + H V R V+EP +S QW+
Sbjct: 305 VVNSAGHQYEGMERFAARKRVVEDLEALGLLEKIDDHAHAVGGCYRCKTVVEPYLSLQWY 364
Query: 417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
V + PLAE+AL AV+ G I+P+++E Y W+ NIKDWCISRQ+WWGHRIP WY
Sbjct: 365 VKVGPLAERALAAVKDGRTRIVPQQWENTYYDWMENIKDWCISRQIWWGHRIPAWYC-DH 423
Query: 477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536
E VA+ D + A G + EI Q+ DVLDTWFSSALWPFST+GWPD +
Sbjct: 424 CGETTVAK-IDPTVCAA---CGSD-EIRQETDVLDTWFSSALWPFSTMGWPD-RTPELAA 477
Query: 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596
FYPT+ L TG DILFFWVARM+MMG+ F VPFS VY+H L+RD+QG+KMSK+ GNVID
Sbjct: 478 FYPTSCLVTGFDILFFWVARMMMMGLHFMNEVPFSDVYIHALVRDAQGQKMSKSKGNVID 537
Query: 597 PIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNL 650
P+ I ++G DA RFT++ A G+D+ L+ ER+ + F NK+WNA +F L NL
Sbjct: 538 PLVVIDQYGTDAFRFTLAAFAAQGRDIKLAEERIAGYRNFVNKIWNASRFALMNL 592
|
|
| UNIPROTKB|E1BLV6 VARS "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 3.0e-154, Sum P(3) = 3.0e-154
Identities = 179/374 (47%), Positives = 244/374 (65%)
Query: 246 YSE--EPGTLYYIKYRVAGR--SDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAI 301
Y E E G L Y+V G +D + +ATTR ET+ GDVA+AV+P+D Y G I
Sbjct: 243 YKEKVEFGVLVSFAYKVQGSDSNDEVVVATTRIETMLGDVAVAVHPKDPRYQHLKGKSVI 302
Query: 302 VPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 361
P R +PI+ D +VD EFGTG +KI+P HD NDY + ++ GL +++M+ G L V
Sbjct: 303 HPFV-SRSLPIVFDDFVDMEFGTGAVKITPAHDQNDYEVGQRHGLEAVSIMDARGALVNV 361
Query: 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 421
F GL RFEARK + + L+E GL E + + VP R +V+EPL+ QW+V
Sbjct: 362 PPPFLGLPRFEARKAVLAALKEQGLFRGIEDNPMVVPLCNRSKDVVEPLLRPQWYVRCGE 421
Query: 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV------- 474
+A+ A AV +G+L I+PE ++ ++ W+ NI+DWCISRQLWWGHRIP ++I
Sbjct: 422 MAQAASAAVTRGDLRILPEAHQRTWHAWMDNIRDWCISRQLWWGHRIPAYFITVNDPAVP 481
Query: 475 -GKEEE---YIVARNADEALEKAHQKY---GKNVEIYQDPDVLDTWFSSALWPFSTLGWP 527
G++ + ++ R EA EKA +++ + + QD DVLDTWFSS L+PFS LGWP
Sbjct: 482 PGEDPDGRYWVSGRTEAEAREKAAKEFCVSPDKISLQQDEDVLDTWFSSGLFPFSILGWP 541
Query: 528 DVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKM 587
+ S +D FYP T+LETGHDILFFWVARMVM+G++ TG +PF VYLH ++RD+ GRKM
Sbjct: 542 NQS-EDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFKEVYLHAIVRDAHGRKM 600
Query: 588 SKTLGNVIDPIDTI 601
SK+LGNVIDP+D I
Sbjct: 601 SKSLGNVIDPLDVI 614
|
|
| TIGR_CMR|SO_3424 SO_3424 "valyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 848 (303.6 bits), Expect = 1.2e-153, Sum P(2) = 1.2e-153
Identities = 161/312 (51%), Positives = 217/312 (69%)
Query: 59 LPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
+ KT+D S E+ +Y WE +GYFKP+ + + I +PPPNVTGSLHMGHA T+ D
Sbjct: 1 MEKTYDPQSIEQTLYQNWEEKGYFKPHGDASQGNYCIMIPPPNVTGSLHMGHAFQDTIMD 60
Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAE-GIKRVELSRDEFTKRVWEWKEK 176
++RY RMKG+ TLW GTDHAGIATQ++VE+ L AE G R +L RD F ++VWEWK +
Sbjct: 61 TLIRYQRMKGKNTLWQVGTDHAGIATQMLVERKLEAEEGKSRHDLGRDVFMEKVWEWKAQ 120
Query: 177 YGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQ 236
GGTIT Q++R+GAS DW RERFT+DE LS+AV E F+RL+E LIY+G +VNW P L
Sbjct: 121 SGGTITKQLRRMGASVDWDRERFTMDEGLSKAVQEVFVRLYEDDLIYRGKRLVNWDPKLH 180
Query: 237 TAVSDLEVEYSEEPGTLYYIKYRVA-GR-----SDFLTIATTRPETLFGDVALAVNPQDE 290
TA+SDLEVE E+ G +++++Y +A G D+L +ATTRPET+ GD A+AV+P DE
Sbjct: 181 TAISDLEVENKEKQGHMWHLRYPLADGELTADGKDYLEVATTRPETMLGDSAVAVHPDDE 240
Query: 291 HYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILN 350
Y IG ++P+ R +PI++D YVD FGTG +KI+P HD NDY + ++ LP+ N
Sbjct: 241 RYQALIGKYILLPIV-NRRIPIVADDYVDMAFGTGCVKITPAHDFNDYEVGKRHKLPMFN 299
Query: 351 VMNKDGTLNEVA 362
V+ D + A
Sbjct: 300 VLTLDAAIRSSA 311
|
|
| UNIPROTKB|E2RTJ7 VARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 1.8e-153, Sum P(3) = 1.8e-153
Identities = 180/374 (48%), Positives = 244/374 (65%)
Query: 246 YSE--EPGTLYYIKYRVAGRS--DFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAI 301
Y E E G L Y++ G + + +ATTR ET+ GDVA+AV+P+D Y G I
Sbjct: 506 YKEKVEFGVLVSFAYKIQGSDGDEEVVVATTRIETMLGDVAVAVHPKDPRYQHLKGRSVI 565
Query: 302 VPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 361
P R +PII D +VD EFGTG +KI+P HD NDY + R+ L + +M+ G L V
Sbjct: 566 HPFL-SRSLPIIFDDFVDMEFGTGAVKITPAHDQNDYEVGRRHRLEAITIMDSQGALINV 624
Query: 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 421
F GL RFEARK + + L+E GL E + + VP R +V+EPL+ QW+V
Sbjct: 625 PPPFLGLPRFEARKAVLAALKEQGLFRGVEDNPMVVPLCNRSKDVVEPLLRPQWYVRCGE 684
Query: 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV------- 474
+A+ A AV +G+L I+PE ++ ++ W+ NI+DWCISRQLWWGHRIP +++
Sbjct: 685 MAQAASAAVTRGDLRILPEAHQRTWHTWMDNIRDWCISRQLWWGHRIPAYFVTVSDPAVP 744
Query: 475 -GKE--EEYIVA-RNADEALEKAHQKYGKN---VEIYQDPDVLDTWFSSALWPFSTLGWP 527
G++ E Y V+ R+ EA EKA +++G + + + QD DVLDTWFSS L+PFS GWP
Sbjct: 745 PGEDPDERYWVSGRSKAEAREKAAKEFGVSSDKISLQQDEDVLDTWFSSGLFPFSIFGWP 804
Query: 528 DVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKM 587
+ S +D FYP T+LETGHDILFFWVARMVM+G++ TG +PF VYLH ++RD+ GRKM
Sbjct: 805 NQS-EDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFREVYLHAIVRDAHGRKM 863
Query: 588 SKTLGNVIDPIDTI 601
SK+LGNVIDP+D I
Sbjct: 864 SKSLGNVIDPLDVI 877
|
|
| CGD|CAL0003105 VAS1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 5.4e-153, Sum P(3) = 5.4e-153
Identities = 177/380 (46%), Positives = 245/380 (64%)
Query: 236 QTAVSDLEVEYSEEPGTLYYIKYRVAGR--SDFLTIATTRPETLFGDVALAVNPQDEHYS 293
+T +S E E GTL Y V ++ LT+ATTRPET+FGD A+AV+P+D Y+
Sbjct: 355 KTLLSVPGYESKIEFGTLTSFSYPVVDSETNEKLTVATTRPETIFGDTAVAVHPKDPRYT 414
Query: 294 QFIGMMAIVPMTYGRHVPIISD-KYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 352
G P R +PII D + VD EFGTG +KI+P HD NDY ++ L +N+
Sbjct: 415 HLHGKFVQHPFL-DRKLPIICDAETVDMEFGTGAVKITPAHDQNDYNTGKRNNLEFINIY 473
Query: 353 NKDGTLNEVAGL-FRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411
DG LNE G ++G+ RF+AR K+ L++ GL V ++ + + +P R G++IEPL+
Sbjct: 474 TDDGLLNENCGPEWKGMKRFDARYKVIEQLKQKGLFVDQKDNEMTIPVCSRSGDIIEPLL 533
Query: 412 SKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVW 471
QW+V + +A+ A+ V++GE+ I P+ E Y WL NI+DWCISRQLWWGHR PV+
Sbjct: 534 KPQWYVDQKQMAKDAIEVVKRGEIVINPKTSEAEYFQWLENIQDWCISRQLWWGHRCPVY 593
Query: 472 YIVGKEEE---------YIVARNADEALEKAHQKY-GKNVEIYQDPDVLDTWFSSALWPF 521
++ + E+ ++ R +EA +KA +K+ K + QD DVLDTWFSS LWP
Sbjct: 594 FVNIENEQIHDKLDNNYWVAGRTEEEAFKKAQEKFPNKKFTLEQDEDVLDTWFSSGLWPI 653
Query: 522 STLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRD 581
STLGWP+ D + F P +MLETG DILFFWV+RM++M I+ TG VPF V+ H L+RD
Sbjct: 654 STLGWPN-ETKDMELFNPMSMLETGWDILFFWVSRMILMSIKLTGKVPFKEVFCHSLVRD 712
Query: 582 SQGRKMSKTLGNVIDPIDTI 601
+QGRKMSK+LGNV+DP+D I
Sbjct: 713 AQGRKMSKSLGNVVDPLDVI 732
|
|
| UNIPROTKB|H0Y4A6 VARS "Valine--tRNA ligase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 884 (316.2 bits), Expect = 8.8e-153, Sum P(3) = 8.8e-153
Identities = 178/374 (47%), Positives = 246/374 (65%)
Query: 246 YSE--EPGTLYYIKYRVAGR-SDF-LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAI 301
Y E E G L Y+V G SD + +ATTR ET+ GDVA+AV+P+D Y G I
Sbjct: 425 YKEKVEFGVLVSFAYKVQGSDSDEEVVVATTRIETMLGDVAVAVHPKDTRYQHLKGKNVI 484
Query: 302 VPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 361
P R +PI+ D++VD +FGTG +KI+P HD NDY + ++ GL +++M+ G L V
Sbjct: 485 HPFL-SRSLPIVFDEFVDMDFGTGAVKITPAHDQNDYEVGQRHGLEAISIMDSRGALINV 543
Query: 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 421
F GL RFEARK + L+E GL E + + VP R +V+EPL+ QW+V
Sbjct: 544 PPPFLGLPRFEARKAVLVALKERGLFRGIEDNPMVVPLCNRSKDVVEPLLRPQWYVRCGE 603
Query: 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV------- 474
+A+ A AV +G+L I+PE ++ ++ W+ NI++WCISRQLWWGHRIP +++
Sbjct: 604 MAQAASAAVTRGDLRILPEAHQRTWHAWMDNIREWCISRQLWWGHRIPAYFVTVSDPAVP 663
Query: 475 -GKEEE---YIVARNADEALEKAHQKYGKN---VEIYQDPDVLDTWFSSALWPFSTLGWP 527
G++ + ++ RN EA EKA +++G + + + QD DVLDTWFSS L+P S LGWP
Sbjct: 664 PGEDPDGRYWVSGRNEAEAREKAAKEFGVSPDKISLQQDEDVLDTWFSSGLFPLSILGWP 723
Query: 528 DVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKM 587
+ S +D FYP T+LETGHDILFFWVARMVM+G++ TG +PF VYLH ++RD+ GRKM
Sbjct: 724 NQS-EDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGRLPFREVYLHAIVRDAHGRKM 782
Query: 588 SKTLGNVIDPIDTI 601
SK+LGNVIDP+D I
Sbjct: 783 SKSLGNVIDPLDVI 796
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q83DD0 | SYV_COXBU | 6, ., 1, ., 1, ., 9 | 0.5125 | 0.8724 | 0.6391 | yes | no |
| Q3A253 | SYV_PELCD | 6, ., 1, ., 1, ., 9 | 0.5048 | 0.8902 | 0.6674 | yes | no |
| Q05873 | SYV_BACSU | 6, ., 1, ., 1, ., 9 | 0.5124 | 0.8694 | 0.6659 | yes | no |
| Q5N3J4 | SYV_SYNP6 | 6, ., 1, ., 1, ., 9 | 0.5132 | 0.8649 | 0.6413 | yes | no |
| Q46IA7 | SYV_PROMT | 6, ., 1, ., 1, ., 9 | 0.5306 | 0.8827 | 0.6377 | yes | no |
| Q72V30 | SYV_LEPIC | 6, ., 1, ., 1, ., 9 | 0.5145 | 0.8516 | 0.6507 | yes | no |
| Q6MQK8 | SYV_BDEBA | 6, ., 1, ., 1, ., 9 | 0.5325 | 0.8531 | 0.6431 | yes | no |
| Q65GK8 | SYV_BACLD | 6, ., 1, ., 1, ., 9 | 0.5041 | 0.8694 | 0.6659 | yes | no |
| Q72ZW8 | SYV_BACC1 | 6, ., 1, ., 1, ., 9 | 0.5207 | 0.8679 | 0.6640 | yes | no |
| Q8RHK3 | SYV_FUSNN | 6, ., 1, ., 1, ., 9 | 0.5273 | 0.8590 | 0.6527 | yes | no |
| Q7NCQ9 | SYV_GLOVI | 6, ., 1, ., 1, ., 9 | 0.5115 | 0.8768 | 0.6588 | yes | no |
| Q7UZI3 | SYV_PROMP | 6, ., 1, ., 1, ., 9 | 0.5137 | 0.8827 | 0.6481 | yes | no |
| Q817R6 | SYV_BACCR | 6, ., 1, ., 1, ., 9 | 0.5174 | 0.8679 | 0.6640 | yes | no |
| Q6HD68 | SYV_BACHK | 6, ., 1, ., 1, ., 9 | 0.5174 | 0.8679 | 0.6640 | yes | no |
| Q9X2D7 | SYV_THEMA | 6, ., 1, ., 1, ., 9 | 0.5253 | 0.8575 | 0.6682 | yes | no |
| Q8XJ42 | SYV_CLOPE | 6, ., 1, ., 1, ., 9 | 0.5114 | 0.8753 | 0.6704 | yes | no |
| Q82X51 | SYV_NITEU | 6, ., 1, ., 1, ., 9 | 0.5085 | 0.8709 | 0.6394 | yes | no |
| Q7V9I9 | SYV_PROMA | 6, ., 1, ., 1, ., 9 | 0.5129 | 0.8798 | 0.6355 | yes | no |
| Q4FM20 | SYV_PELUB | 6, ., 1, ., 1, ., 9 | 0.5017 | 0.8545 | 0.6582 | yes | no |
| Q7U3N4 | SYV_SYNPX | 6, ., 1, ., 1, ., 9 | 0.5353 | 0.8768 | 0.6466 | yes | no |
| Q3Z9C5 | SYV_DEHE1 | 6, ., 1, ., 1, ., 9 | 0.5203 | 0.8605 | 0.6590 | yes | no |
| Q67SJ2 | SYV_SYMTH | 6, ., 1, ., 1, ., 9 | 0.5230 | 0.8531 | 0.6311 | yes | no |
| Q3ZZG9 | SYV_DEHSC | 6, ., 1, ., 1, ., 9 | 0.5109 | 0.8620 | 0.6602 | yes | no |
| Q633Y6 | SYV_BACCZ | 6, ., 1, ., 1, ., 9 | 0.5191 | 0.8679 | 0.6640 | yes | no |
| Q8EZT8 | SYV_LEPIN | 6, ., 1, ., 1, ., 9 | 0.5145 | 0.8516 | 0.6507 | yes | no |
| Q8DIS8 | SYV_THEEB | 6, ., 1, ., 1, ., 9 | 0.5114 | 0.8813 | 0.6506 | yes | no |
| Q81LD3 | SYV_BACAN | 6, ., 1, ., 1, ., 9 | 0.5174 | 0.8679 | 0.6640 | yes | no |
| Q7TUI9 | SYV_PROMM | 6, ., 1, ., 1, ., 9 | 0.5152 | 0.8902 | 0.6458 | yes | no |
| Q97GG8 | SYV_CLOAB | 6, ., 1, ., 1, ., 9 | 0.5258 | 0.8738 | 0.6685 | yes | no |
| Q73MZ2 | SYV_TREDE | 6, ., 1, ., 1, ., 9 | 0.5201 | 0.8768 | 0.6501 | yes | no |
| A8F8Q3 | SYV_THELT | 6, ., 1, ., 1, ., 9 | 0.5111 | 0.8486 | 0.6643 | yes | no |
| Q74BJ6 | SYV_GEOSL | 6, ., 1, ., 1, ., 9 | 0.5126 | 0.8664 | 0.6583 | yes | no |
| Q8RBN5 | SYV_THETN | 6, ., 1, ., 1, ., 9 | 0.5137 | 0.8931 | 0.6848 | yes | no |
| B7GH39 | SYV_ANOFW | 6, ., 1, ., 1, ., 9 | 0.5092 | 0.8605 | 0.6628 | yes | no |
| Q3AF87 | SYV_CARHZ | 6, ., 1, ., 1, ., 9 | 0.5384 | 0.8872 | 0.6810 | yes | no |
| Q5KWL3 | SYV_GEOKA | 6, ., 1, ., 1, ., 9 | 0.5175 | 0.8605 | 0.6590 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.9 | 0.824 |
| 3rd Layer | 6.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_II002297 | aminoacyl-tRNA ligase (EC-6.1.1.9) (951 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.VII.52.1 | branched-chain amino acid aminotransferase (EC-2.6.1.42) (338 aa) | • | • | 0.919 | ||||||
 | estExt_Genewise1_v1.C_LG_II1818 | hypothetical protein (319 aa) | • | • | 0.915 | ||||||
 | fgenesh4_pm.C_LG_IX000386 | hypothetical protein (339 aa) | • | • | 0.914 | ||||||
 | gw1.1161.2.1 | hypothetical protein (342 aa) | • | • | 0.911 | ||||||
 | eugene3.00180323 | aminodeoxychorismate lyase (EC-4.1.3.38) (295 aa) | • | • | 0.910 | ||||||
 | estExt_fgenesh4_pm.C_LG_XI0275 | aminodeoxychorismate lyase (EC-4.1.3.38) (339 aa) | • | 0.899 | |||||||
 | eugene3.00031274 | aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa) | • | • | 0.799 | ||||||
 | gw1.28.724.1 | histidine-tRNA ligase (EC-6.1.1.21) (441 aa) | • | • | 0.783 | ||||||
 | eugene3.114390001 | Predicted protein (351 aa) | • | 0.756 | |||||||
 | gw1.VIII.2106.1 | threonine-tRNA ligase (EC-6.1.1.3) (669 aa) | • | • | • | 0.748 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 674 | |||
| PLN02943 | 958 | PLN02943, PLN02943, aminoacyl-tRNA ligase | 0.0 | |
| PRK05729 | 874 | PRK05729, valS, valyl-tRNA synthetase; Reviewed | 0.0 | |
| COG0525 | 877 | COG0525, ValS, Valyl-tRNA synthetase [Translation, | 0.0 | |
| TIGR00422 | 861 | TIGR00422, valS, valyl-tRNA synthetase | 0.0 | |
| PTZ00419 | 995 | PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro | 0.0 | |
| PRK14900 | 1052 | PRK14900, valS, valyl-tRNA synthetase; Provisional | 0.0 | |
| pfam00133 | 606 | pfam00133, tRNA-synt_1, tRNA synthetases class I ( | 0.0 | |
| PLN02381 | 1066 | PLN02381, PLN02381, valyl-tRNA synthetase | 0.0 | |
| PRK13208 | 800 | PRK13208, valS, valyl-tRNA synthetase; Reviewed | 1e-159 | |
| cd00817 | 382 | cd00817, ValRS_core, catalytic core domain of valy | 1e-116 | |
| COG0060 | 933 | COG0060, IleS, Isoleucyl-tRNA synthetase [Translat | 7e-93 | |
| TIGR00392 | 861 | TIGR00392, ileS, isoleucyl-tRNA synthetase | 5e-90 | |
| cd00817 | 382 | cd00817, ValRS_core, catalytic core domain of valy | 2e-86 | |
| PRK06039 | 975 | PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe | 6e-78 | |
| PRK05743 | 912 | PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe | 1e-65 | |
| PRK13804 | 961 | PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi | 3e-53 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 2e-47 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 4e-43 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 1e-41 | |
| PLN02882 | 1159 | PLN02882, PLN02882, aminoacyl-tRNA ligase | 6e-37 | |
| cd00818 | 338 | cd00818, IleRS_core, catalytic core domain of isol | 2e-36 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 3e-36 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 6e-35 | |
| TIGR00396 | 842 | TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba | 1e-34 | |
| PLN02843 | 974 | PLN02843, PLN02843, isoleucyl-tRNA synthetase | 5e-33 | |
| PRK00390 | 805 | PRK00390, leuS, leucyl-tRNA synthetase; Validated | 9e-26 | |
| PLN02843 | 974 | PLN02843, PLN02843, isoleucyl-tRNA synthetase | 4e-25 | |
| PTZ00427 | 1205 | PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati | 2e-24 | |
| cd00818 | 338 | cd00818, IleRS_core, catalytic core domain of isol | 2e-18 | |
| PLN02563 | 963 | PLN02563, PLN02563, aminoacyl-tRNA ligase | 2e-18 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 1e-16 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 1e-16 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 8e-14 | |
| pfam13603 | 178 | pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, | 2e-13 | |
| PRK12267 | 648 | PRK12267, PRK12267, methionyl-tRNA synthetase; Rev | 2e-13 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 2e-13 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 3e-13 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 5e-13 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 3e-12 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 7e-12 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 2e-11 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 6e-11 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 6e-11 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 1e-09 | |
| PRK12267 | 648 | PRK12267, PRK12267, methionyl-tRNA synthetase; Rev | 4e-08 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 2e-07 | |
| PRK00390 | 805 | PRK00390, leuS, leucyl-tRNA synthetase; Validated | 3e-07 | |
| PTZ00427 | 1205 | PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati | 7e-07 | |
| PLN02959 | 1084 | PLN02959, PLN02959, aminoacyl-tRNA ligase | 7e-07 | |
| PLN02224 | 616 | PLN02224, PLN02224, methionine-tRNA ligase | 1e-05 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 2e-05 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 2e-05 | |
| COG0215 | 464 | COG0215, CysS, Cysteinyl-tRNA synthetase [Translat | 3e-05 | |
| cd07962 | 135 | cd07962, Anticodon_Ia_Val, Anticodon-binding domai | 5e-05 | |
| PLN02563 | 963 | PLN02563, PLN02563, aminoacyl-tRNA ligase | 6e-04 | |
| PRK00133 | 673 | PRK00133, metG, methionyl-tRNA synthetase; Reviewe | 8e-04 | |
| cd00672 | 213 | cd00672, CysRS_core, catalytic core domain of cyst | 0.003 |
| >gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 1286 bits (3328), Expect = 0.0
Identities = 569/667 (85%), Positives = 612/667 (91%), Gaps = 14/667 (2%)
Query: 6 SPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLP---KT 62
P + + S RLNPLL S +R P R +RF A AA+EN+ T P K+
Sbjct: 5 RPSSALLSCSSIRRLNPLLLSACRRRAWAP----RRAARRFCAAAASENDVFTSPETAKS 60
Query: 63 FDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRY 122
FDFTSEERIYNWWESQGYFKPNF+RG DPFVI MPPPNVTGSLHMGHAMFVTLEDIMVRY
Sbjct: 61 FDFTSEERIYNWWESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRY 120
Query: 123 HRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTIT 182
+RMKGRPTLW+PGTDHAGIATQLVVEKMLA+EGIKR +L RDEFTKRVWEWKEKYGGTIT
Sbjct: 121 NRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTIT 180
Query: 183 SQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDL 242
+QIKRLGASCDW+RERFTLDEQLSRAVVEAF+RLHEKGLIYQGSYMVNWSPNLQTAVSDL
Sbjct: 181 NQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDL 240
Query: 243 EVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAI 301
EVEYSEEPGTLYYIKYRVAG S DFLTIATTRPETLFGDVA+AVNP+D+ YS++IG MAI
Sbjct: 241 EVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAI 300
Query: 302 VPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 361
VPMTYGRHVPII+D+YVDK+FGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV
Sbjct: 301 VPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 360
Query: 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 421
AGL+ FEAR+KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP
Sbjct: 361 AGLY----WFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 416
Query: 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EEE 479
LAEKAL AVE GELTI+PERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK EE+
Sbjct: 417 LAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEED 476
Query: 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539
YIVAR+A+EALEKA +KYGK+VEIYQDPDVLDTWFSSALWPFSTLGWPDVSA+DFKKFYP
Sbjct: 477 YIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYP 536
Query: 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599
TT+LETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQGRKMSKTLGNVIDP+D
Sbjct: 537 TTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLD 596
Query: 600 TIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRW 659
TIKEFG DALRFT++LGTAGQDL+LS ERLT+NKAFTNKLWNAGKF+LQNLPSQ+D S W
Sbjct: 597 TIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAW 656
Query: 660 EILLAYK 666
E +LA K
Sbjct: 657 EHILACK 663
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Length = 958 |
| >gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 1082 bits (2801), Expect = 0.0
Identities = 360/602 (59%), Positives = 454/602 (75%), Gaps = 15/602 (2%)
Query: 56 KDTLPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVT 114
LPKT+D E + Y WE +GYFKP+ + PF I +PPPNVTGSLHMGHA+ T
Sbjct: 2 MMELPKTYDPKEVEAKWYQKWEEKGYFKPD-DNSKKPFSIVIPPPNVTGSLHMGHALNNT 60
Query: 115 LEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174
L+DI++RY RM+G TLWLPGTDHAGIATQ+VVE+ LAAEG R +L R++F ++VWEWK
Sbjct: 61 LQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWK 120
Query: 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPN 234
E+ GGTIT+Q++RLGASCDW+RERFT+DE LS+AV E F+RL+EKGLIY+G +VNW P
Sbjct: 121 EESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPK 180
Query: 235 LQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ 294
LQTA+SDLEVEY E G L++I+Y +A SD+L +ATTRPET+ GD A+AVNP+DE Y
Sbjct: 181 LQTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKH 240
Query: 295 FIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK 354
IG I+P+ GR +PII+D+YVD EFGTG +KI+P HD ND+ + ++ LP++N+M++
Sbjct: 241 LIGKTVILPLV-GREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDE 299
Query: 355 DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQ 414
DGT+NE G ++GLDRFEARK + +DLEE GL VK EPHT V S R G VIEP +S Q
Sbjct: 300 DGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQ 359
Query: 415 WFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV 474
WFV M+PLA+ AL AVE GE+ +PER+EK Y HW+ NI+DWCISRQLWWGHRIP WY
Sbjct: 360 WFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWY-- 417
Query: 475 GKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDF 534
++ E V R EA EKA + QD DVLDTWFSSALWPFSTLGWP+ +D
Sbjct: 418 DEDGEVYVGREEPEAREKAL--------LTQDEDVLDTWFSSALWPFSTLGWPE-KTEDL 468
Query: 535 KKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNV 594
K+FYPT++L TG DI+FFWVARM+MMG+ FTG VPF VY+HGL+RD QGRKMSK+ GNV
Sbjct: 469 KRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNV 528
Query: 595 IDPIDTIKEFGADALRFT-ISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQ 653
IDP+D I ++GADALRFT +L + G+D+ ER+ + F NKLWNA +F+L NL
Sbjct: 529 IDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGA 588
Query: 654 ND 655
+
Sbjct: 589 DV 590
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Length = 874 |
| >gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 954 bits (2469), Expect = 0.0
Identities = 350/614 (57%), Positives = 438/614 (71%), Gaps = 18/614 (2%)
Query: 59 LPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
LPKT+D EE+ Y WE GYFKP+ PF I PPPNVTGSLHMGHA+ TL+D
Sbjct: 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQD 60
Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
I+ RY RM+G LW PGTDHAGIATQ+VVEK LAAEGI R +L R+EF K+ WEWKE+
Sbjct: 61 ILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEES 120
Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
GGTI Q++RLG S DW+RERFT+D LSRAV EAF+RL+EKGLIY+G +VNW P +T
Sbjct: 121 GGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRT 180
Query: 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297
A+SD+EVEY E G LYYIKY +A +L +ATTRPETL GD A+AV+P DE Y +G
Sbjct: 181 AISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVG 240
Query: 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357
I+P+ GR +PII+D+YVD EFGTG +KI+P HD NDY + ++ LP++N++++DG
Sbjct: 241 KEVILPLV-GREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGR 299
Query: 358 LNEVAGL-FRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
+NE A F GLDRFEARKK+ DLEE GL VK EPH V +R G IEPL+SKQWF
Sbjct: 300 INEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWF 359
Query: 417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
V + LA+KAL AV+ G++ +PER EK Y W+ NI+DWCISRQLWWGHRIPVWY +
Sbjct: 360 VKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCK-E 418
Query: 477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536
+VA E A + + +E QD DVLDTWFSS+LWPFSTLGWP+ + D KK
Sbjct: 419 CGNVVVAEEEPEDPAAAEKCPKEELE--QDEDVLDTWFSSSLWPFSTLGWPEET-PDLKK 475
Query: 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596
FYPT +L TGHDI+FFWVARM+M G+ TG VPF VY+HGL+RD QGRKMSK+ GNVID
Sbjct: 476 FYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVID 535
Query: 597 PIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLP---- 651
P+D I ++GADALRFT++ + G+D++ +R+ + F NKLWNA +F+L NL
Sbjct: 536 PLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGP 595
Query: 652 ------SQNDISRW 659
+ + RW
Sbjct: 596 DDLDLLALSLADRW 609
|
Length = 877 |
| >gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 885 bits (2288), Expect = 0.0
Identities = 354/608 (58%), Positives = 449/608 (73%), Gaps = 8/608 (1%)
Query: 59 LPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
+PK +D E++ Y WE G+FKP+ PF I +PPPNVTGSLH+GHA+ +++D
Sbjct: 1 MPKDYDPHEVEKKWYKKWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQD 60
Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
I+ RY RMKG LWLPGTDHAGIATQ+ VEK L AEG + +L R+EF +++WEWKE+
Sbjct: 61 IIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEES 120
Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
GGTI +QIKRLGAS DW+RERFT+DE LS+AV EAF+RL+EKGLIY+G Y+VNW P L T
Sbjct: 121 GGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNT 180
Query: 238 AVSDLEVEYSEEPGTLYYIKYRVA-GRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFI 296
A+SD+EVEY E G LYYI+Y +A G D+L +ATTRPET+FGD A+AV+P+DE Y I
Sbjct: 181 AISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLI 240
Query: 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG 356
G I+P+T GR +PII+D+YVD EFGTG +K++P HD NDY ++ L +N++++DG
Sbjct: 241 GKKVILPLT-GRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDG 299
Query: 357 TLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
LNE AG ++GL RFEARKK+ DL+E GL VK EPHT V R G V+EPL+SKQWF
Sbjct: 300 LLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWF 359
Query: 417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
V +E LA+KAL A E+GE+ +P+R EK Y +WL NIKDWCISRQL WGHRIPVWY +
Sbjct: 360 VKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCK-E 418
Query: 477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536
E VA+ E L G +VE+ QD DVLDTWFSS+LWPFSTLGWPD + D KK
Sbjct: 419 CGEVYVAKE--EPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDET-KDLKK 475
Query: 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596
FYPT +L TG+DI+FFWVARM+ + TG VPF VY+HGL+RD QGRKMSK+LGNVID
Sbjct: 476 FYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVID 535
Query: 597 PIDTIKEFGADALRFT-ISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQND 655
P+D I+++GADALRFT SL T G D++ +R+ + + F NKLWNA +F+L NL +
Sbjct: 536 PLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLE 595
Query: 656 ISRWEILL 663
+S E L
Sbjct: 596 LSGGEEKL 603
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 828 bits (2142), Expect = 0.0
Identities = 317/690 (45%), Positives = 434/690 (62%), Gaps = 74/690 (10%)
Query: 55 NKDTLPKTFDFTS-EERIYNWWESQGYFKPNF----ERGSDPFVISMPPPNVTGSLHMGH 109
N ++ ++D E Y WWE G+FKP FVI +PPPNVTG LH+GH
Sbjct: 20 NISSMAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGH 79
Query: 110 AMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLA-AEGIKRVELSRDEFTK 168
A+ ++D ++RYHRMKG TLW+PGTDHAGIATQ+VVEK L E R +L R+EF K
Sbjct: 80 ALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLK 139
Query: 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYM 228
+VWEWK+K+G I +Q++RLG+S DW+RE FT+DEQ S+AV EAF+RL+E GLIY+ + +
Sbjct: 140 KVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRL 199
Query: 229 VNWSPNLQTAVSDLEVEYSE----------------EPGTLYYIKYRVAGRSDF-LTIAT 271
VNW L+TA+SD+EVE+ E E G L++ Y + + +AT
Sbjct: 200 VNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVAT 259
Query: 272 TRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISD-KYVDKEFGTGVLKIS 330
TR ET+ GDVA+AV+P+DE Y + G I P R +PII+D + VD EFGTG +KI+
Sbjct: 260 TRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKIT 319
Query: 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKK 390
P HD NDY +A++ LP +N+ DG +NE G F G+ RF+ R+K+ +L+E GL K
Sbjct: 320 PAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDK 379
Query: 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL 450
P+ +R+PR R G+++EP++ QW+V + +A++A+ AV GEL I+P E ++ HWL
Sbjct: 380 VPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWL 439
Query: 451 SNIKDWCISRQLWWGHRIPVWYIVGK--------EEEYIVARNADEALEKAHQKYGKNVE 502
NI+DWCISRQLWWGHRIP + ++ K EE ++VAR+ +EALEKA +K+G + E
Sbjct: 440 ENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEE 499
Query: 503 IY---QDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVM 559
+ QD DVLDTWFSS L+PFSTLGWPD + DD ++F+PT++LETG DILFFWVARMVM
Sbjct: 500 DFELEQDEDVLDTWFSSGLFPFSTLGWPDQT-DDLQRFFPTSLLETGSDILFFWVARMVM 558
Query: 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTI------------------ 601
M + T +PF V+LH ++RDSQG KMSK+ GNVIDP++ I
Sbjct: 559 MSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLP 618
Query: 602 ------------KEF-------GADALRFTI-SLGTAGQDLSLSIERLTANKAFTNKLWN 641
KEF G DALRF + + G++++L I R+ + F NKLWN
Sbjct: 619 EKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWN 678
Query: 642 AGKFILQNLPSQNDISRWEILLAYKVCVLT 671
A KF L L ++ + V L
Sbjct: 679 AVKFALMKLLKDFNLPNSTLFKPNNVESLP 708
|
Length = 995 |
| >gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 708 bits (1828), Expect = 0.0
Identities = 309/603 (51%), Positives = 407/603 (67%), Gaps = 15/603 (2%)
Query: 54 NNKDTLPKTFDFTS-EERIYNWWESQGYFKPN-FERGSDPFVISMPPPNVTGSLHMGHAM 111
N+ L K ++ E R Y +W+ +GYF + +R PF I +PPPNVTGSLH+GHA+
Sbjct: 10 ENRTELAKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHAL 69
Query: 112 FVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML-AAEGIKRVELSRDEFTKRV 170
TL+D+++R+ RM G TLWLPGTDHAGIATQ++VEK L E R +L R+ F +RV
Sbjct: 70 TATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERV 129
Query: 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVN 230
W WKE+YG I Q K LGAS DW RERFT+DE LSRAV E F+RLHE+GLIY+ ++N
Sbjct: 130 WAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLIN 189
Query: 231 WSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQD 289
W P+ +TA+SDLEVE+ E G L+ Y +A S + +ATTRPET+ GD A+AV+P D
Sbjct: 190 WCPDCRTALSDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLD 249
Query: 290 EHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPI 348
Y G P+T GR PI++D VD +FGTG +K++P HD ND+ + ++ GL +
Sbjct: 250 PRYMALHGKKVRHPIT-GRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEM 308
Query: 349 LNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408
+ V+ DG + AG GLDRFEARK++ L E GL +PH L + R QR ++E
Sbjct: 309 ITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILE 368
Query: 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRI 468
PL+S QW+V +EPLA A+ AVE+G +PE++ Y W+ NI DWCISRQLWWGH+I
Sbjct: 369 PLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQI 428
Query: 469 PVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPD 528
P WY + VAR EA + E+ QD DVLDTWFSS LWPFST+GWP+
Sbjct: 429 PAWYC--PDGHVTVARETPEACSTCGKA-----ELRQDEDVLDTWFSSGLWPFSTMGWPE 481
Query: 529 VSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMS 588
D + FYPT+++ETGHDI+FFWVARM+MMG+ F G VPF VYLH ++RD +G+KMS
Sbjct: 482 -QTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMS 540
Query: 589 KTLGNVIDPIDTIKEFGADALRFTI-SLGTAGQDLSLSIERLTANKAFTNKLWNAGKFIL 647
KT GNVIDP+ +++GADALRFT+ +L G+D+ L+ ER+ +AF NKLWNA +F L
Sbjct: 541 KTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFAL 600
Query: 648 QNL 650
NL
Sbjct: 601 MNL 603
|
Length = 1052 |
| >gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) | Back alignment and domain information |
|---|
Score = 675 bits (1743), Expect = 0.0
Identities = 270/608 (44%), Positives = 351/608 (57%), Gaps = 56/608 (9%)
Query: 71 IYNWWESQGYFKPNFERGSD--PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGR 128
IY +W+ QGYFK + E G F I PPN TG LH+GHA+ TL+DI++RY RM+G
Sbjct: 2 IYQFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGF 61
Query: 129 PTLWLPGTDHAGIATQLVVEKMLAAEGIK-RVELSRDEFTKRVWEWKEKYGGTITSQIKR 187
LW+PG DH G+ T+ VEK L +G K R +L R++F ++ EWK +Y I SQ KR
Sbjct: 62 DVLWVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKR 121
Query: 188 LGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247
LG S DW RE FTLD L AV F+RLH+KGLIY+G VNWSP L TA+S+ EVEY
Sbjct: 122 LGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEYK 181
Query: 248 EEPGTLYYIKYRVAGRSD-FLTIATTRPETLFGDVALAVNP------------------- 287
+ G ++ + +A L I TT P TL G+ A+AVNP
Sbjct: 182 DVKGPSIHVAFPLADGKGASLVIWTTTPWTLPGNTAVAVNPEFNYVKIRVTGEYYILAEA 241
Query: 288 ----------------QDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISP 331
+D + IG I P R +PII+D YVD EFGTG + I+P
Sbjct: 242 LLKSLYKKKKEDGEILEDFRGKELIGKKYIHPF-VNREIPIIADDYVDMEFGTGAVHIAP 300
Query: 332 GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKE 391
H +DY + ++ L +N ++ DGT NE A F+GL RF+ARKK+ L E GL +K E
Sbjct: 301 AHGEDDYEVGKRHNLEFINPVDDDGTYNEEAPEFQGLKRFKARKKIVELLTEKGLLLKIE 360
Query: 392 PHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS 451
P P R G I + QWFV M+ LAE AL AVEK + +P+ EK Y +WL
Sbjct: 361 PIEHSYPHCWRSGTPIIYRATPQWFVRMKNLAEAALKAVEK--VQFVPKWGEKRYGNWLE 418
Query: 452 NIKDWCISRQLWWGHRIPVWYIVGKEEEY--------IVARNADEALEKAHQKYGK---- 499
NI+DWCISRQ WWGH IP WY E Y + R +E +E + K
Sbjct: 419 NIQDWCISRQRWWGHPIPAWYSKDTGEVYVRGSLKELVAGREEEEGIEAWLHRDAKDLLG 478
Query: 500 --NVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARM 557
+ QD DVLDTWFSS WPFSTLG+P + +FK+F+P ML G D W RM
Sbjct: 479 KGAGTLEQDEDVLDTWFSSGSWPFSTLGYPFTNTPEFKRFFPADMLLEGSDQTRGWFYRM 538
Query: 558 VMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 617
+++G TGS P+ +V +HGL+RD QGRKMSK+LGNVIDP+D I ++GADALR ++
Sbjct: 539 IVLGTALTGSAPYKNVLVHGLVRDEQGRKMSKSLGNVIDPLDVIDKYGADALRLWLASSD 598
Query: 618 AGQDLSLS 625
G+D++ S
Sbjct: 599 YGRDINFS 606
|
Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606 |
| >gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 643 bits (1659), Expect = 0.0
Identities = 298/664 (44%), Positives = 409/664 (61%), Gaps = 74/664 (11%)
Query: 59 LPKTFDFTSEERI-YNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
+ K + ++ E+ Y WWE GYF + + PFVI +PPPNVTG+LH+GHA+ +ED
Sbjct: 96 MAKQYSPSAVEKSWYAWWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 155
Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAE-GIKRVELSRDEFTKRVWEWKEK 176
++R+ RM G LW+PG DHAGIATQ+VVEK L E + R ++ R+EF VW+WK++
Sbjct: 156 TIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDE 215
Query: 177 YGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQ 236
YGGTI +Q++RLGAS DW+RE FT+DEQ S+AV EAF+RL+++GLIY+ +VNW L+
Sbjct: 216 YGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLR 275
Query: 237 TAVSDLEVEYSE----------------EPGTLYYIKYRVAGRSDFLTIATTRPETLFGD 280
TA+SD+EV+Y + E G L Y + G + +ATTR ET+ GD
Sbjct: 276 TAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGD 335
Query: 281 VALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYL 339
A+A++P DE Y G A+ P GR +PII D VD FGTG +KI+P HD ND+
Sbjct: 336 TAIAIHPDDERYKHLHGKFAVHPFN-GRKLPIICDAILVDPNFGTGAVKITPAHDPNDFE 394
Query: 340 LARKLGLPILNVMNKDGTLNEVAGL-FRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 398
+ ++ L +N+ DG +N G F G+ RF AR+ + L++ GL + + +R+
Sbjct: 395 VGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLG 454
Query: 399 RSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGE---LTIMPERFEKIYNHWLSNIKD 455
R +V+EP++ QWFV +A++AL A GE L +P+++ + WL NI+D
Sbjct: 455 LCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRD 514
Query: 456 WCISRQLWWGHRIPVWYIVGKEEE----------YIVARNADEALEKAHQKY-GKNVEIY 504
WCISRQLWWGHRIP WY+ ++++ ++VARN +AL +A QK+ GK E+
Sbjct: 515 WCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELS 574
Query: 505 QDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEF 564
QDPDVLDTWFSS L+P S LGWPD + DD K FYPT++LETGHDILFFWVARMVMMG++
Sbjct: 575 QDPDVLDTWFSSGLFPLSVLGWPDDT-DDLKAFYPTSVLETGHDILFFWVARMVMMGMQL 633
Query: 565 TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK---------------------- 602
G VPF VYLH +IRD+ GRKMSK+LGNVIDP++ I
Sbjct: 634 GGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELV 693
Query: 603 ---------------EFGADALRFTISLGTAGQD-LSLSIERLTANKAFTNKLWNAGKFI 646
E G DALRF + TA D ++L I R+ + + NKLWNA +F
Sbjct: 694 VAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFA 753
Query: 647 LQNL 650
+ L
Sbjct: 754 MSKL 757
|
Length = 1066 |
| >gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 478 bits (1234), Expect = e-159
Identities = 213/605 (35%), Positives = 322/605 (53%), Gaps = 28/605 (4%)
Query: 58 TLPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLE 116
LPK +D EE+ WE +G +K + + + I PPP V+GSLH+GH T
Sbjct: 5 ELPKKYDPEELEEKWQKIWEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHT 64
Query: 117 DIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEK 176
D + RY RM+G + G D G+ T+ VEK GI++ ++SR+EF + E ++
Sbjct: 65 DFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYY---GIRKDDISREEFIELCRELTDE 121
Query: 177 YGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV-EAFIRLHEKGLIYQGSYMVNWSPNL 235
+RLG S DW+ E T+ R + ++F+ L++KGLIY+ V W P
Sbjct: 122 DEKKFRELWRRLGLSVDWSLEYQTISP-EYRRISQKSFLDLYKKGLIYRAEAPVLWCPRC 180
Query: 236 QTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF 295
+TA++ EVEY E G L YIK+ V + + IATTRPE L VA+ V+P DE Y
Sbjct: 181 ETAIAQAEVEYREREGKLNYIKFPVEDGEE-IEIATTRPELLPACVAVVVHPDDERYKHL 239
Query: 296 IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKD 355
+G AIVP+ +G VPI++D VD +FGTG + I D D R+L LP ++++D
Sbjct: 240 VGKTAIVPL-FGVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDED 298
Query: 356 GTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQW 415
G + E AG GL EARKK+ DL+ GL K+EP V +R +E LV++QW
Sbjct: 299 GRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQW 358
Query: 416 FVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIK-DWCISRQLWWGHRIPVWY-- 472
F+ + L E+ L + E+ PE +W+ + DWCISRQ ++G IPVWY
Sbjct: 359 FIKVLDLKEELLERGK--EINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCK 416
Query: 473 -----IVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWP 527
I+ EE+ V DE + G + DV+DTW +S++ P GW
Sbjct: 417 DCGHPILPDEEDLPVDPTKDEPPGYKCPQCGSP-GFEGETDVMDTWATSSITPLIVTGWE 475
Query: 528 DVSADDFKKFYPTTMLETGHDILFFW----VARMVMMGIEFTGSVPFSHVYLHGLIRDSQ 583
D F+K +P + GHDI+ W + R ++ TG +P+ ++ + G++ D
Sbjct: 476 R-DEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLL----TGKLPWKNIMISGMVLDPD 530
Query: 584 GRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAG 643
G+KMSK+ GNV+ P + ++++GADA+R+ + G D +++ + KLWNA
Sbjct: 531 GKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNAS 590
Query: 644 KFILQ 648
+F+L
Sbjct: 591 RFVLH 595
|
Length = 800 |
| >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 353 bits (909), Expect = e-116
Identities = 138/227 (60%), Positives = 171/227 (75%), Gaps = 6/227 (2%)
Query: 402 RGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQ 461
R G+VIEPL+ QWFV ++ LA+KAL AV++G++ +PER EK Y +WL NI+DWCISRQ
Sbjct: 158 RSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQ 217
Query: 462 LWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQK---YGKNVEIYQDPDVLDTWFSSAL 518
LWWGHRIP WY VAR DEA++KA + E+ QD DVLDTWFSS+L
Sbjct: 218 LWWGHRIPAWYCKDGGHWV-VAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSL 276
Query: 519 WPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGL 578
WPFSTLGWP+ + D KKFYPT++L TGHDI+FFWVARM+M G++ TG +PF VYLHGL
Sbjct: 277 WPFSTLGWPEET-KDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGL 335
Query: 579 IRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFT-ISLGTAGQDLSL 624
+RD GRKMSK+LGNVIDP+D I +GADALRFT S T G+D++L
Sbjct: 336 VRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 |
| >gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 307 bits (789), Expect = 7e-93
Identities = 207/670 (30%), Positives = 302/670 (45%), Gaps = 107/670 (15%)
Query: 60 PKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIM 119
PK F E IY + +G FV+ PP G++H+GHA+ L+DI+
Sbjct: 25 PKILKFWEENDIYEKI------REERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDII 78
Query: 120 VRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR----VWEWKE 175
VRY M+G ++PG D G+ +L VEK L +EF ++ E +
Sbjct: 79 VRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVD 138
Query: 176 KYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNL 235
+ Q KRLG DW T+D +V AF L+EKGL+Y+G V WSP
Sbjct: 139 EQ----KEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRC 194
Query: 236 QTAVSDLEVEYSEEPGTLYYIKYRVAGRSD----FLTIATTRPETLFGDVALAVNPQ--- 288
+TA+++ EVEY + Y+K+ V +L I TT P TL ++A+AV+P
Sbjct: 195 ETALAEAEVEYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDY 254
Query: 289 ------DEHY---------------------------SQFIGMMAIVPMTY---GRHVPI 312
E S+ G+ P R P+
Sbjct: 255 VLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPV 314
Query: 313 ISDKYVDKEFGTGVLKISPGHDHNDYLLARKLG-LPILNVMNKDGTLNEVAGLFRGLDRF 371
I +V + GTG++ +PGH DY + +K G L +LN ++ +G E A + GL
Sbjct: 315 ILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVK 374
Query: 372 EARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV---SKQWFVTMEPLAEKALH 428
+A KK+ DL+E G +K E P R PL+ + QWFV+++ L +K L
Sbjct: 375 DANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKT---PLIYRATPQWFVSVDKLRDKMLK 431
Query: 429 AVEKGELTIMPE----RFEKIYNHWLSNIKDWCISRQLWWGHRIPVWY-------IVGKE 477
+ K + +P+ RF + N DWCISRQ +WG IPVWY +V E
Sbjct: 432 EINK--VNWVPDWGKNRFGN----MVENRPDWCISRQRYWGVPIPVWYCKETGEILVITE 485
Query: 478 E--EYIVARNADEALEKAHQKYGKNVEI--YQD-------PDVLDTWFSS------ALWP 520
E E + ++ ++ H+ + +D PDVLD WF S L P
Sbjct: 486 ELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHP 545
Query: 521 FSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIR 580
L +P + AD FY LE G D W ++ G P+ +V HG +
Sbjct: 546 RENLKFPALFAD----FY----LE-GSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVL 596
Query: 581 DSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLW 640
D +GRKMSK+LGNV+DP D I ++GAD LR ++ +DL S E L + K+
Sbjct: 597 DEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIR 656
Query: 641 NAGKFILQNL 650
N +F+L NL
Sbjct: 657 NTYRFLLGNL 666
|
Length = 933 |
| >gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = 5e-90
Identities = 195/677 (28%), Positives = 299/677 (44%), Gaps = 91/677 (13%)
Query: 58 TLPKTFDF-TSEERIYNWWESQGYFKPNFER--GSDPFVISMPPPNVTGSLHMGHAMFVT 114
P + EE+I +W+ F+ + G F+ PP GS+H+GHA+
Sbjct: 1 KFPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKI 60
Query: 115 LEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE-LSRDEFTKRVWEW 173
L+DI++RY M+G PG D G+ + VEK L G K + L +EF ++ E+
Sbjct: 61 LKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREF 120
Query: 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSP 233
K Q +RLG DW T+D + F HEKGL+Y+G V WSP
Sbjct: 121 ALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSP 180
Query: 234 NLQTAVSDLEVEYSEEPGTLY----YIKYRVAGRSD--------FLTIATTRPETLFGDV 281
+TA+++ EVEY E + Y+K+ V L I TT P TL ++
Sbjct: 181 RCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNL 240
Query: 282 ALAVNPQ--------DEHYSQFIGMMA--------------IVPMTYGRHVP-------- 311
A+AV+P + FI I+ G +
Sbjct: 241 AIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPL 300
Query: 312 -------------IISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 358
+I +V E GTG++ +PGH DY + +K GL +L+ +++ G
Sbjct: 301 YDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVY 360
Query: 359 NE----VAGLFR---GLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411
E G F D +A K + L++ GL +K E T P R +
Sbjct: 361 TEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRA 420
Query: 412 SKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVW 471
++QWF+ + + ++ L ++K + +PE E + +WL N DWCISRQ +WG IP+W
Sbjct: 421 TEQWFIKTKDIKDQMLEQIKK--VNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIW 478
Query: 472 YIVGKEEEYIVARNADEALEKAHQK--------------------YGKNVEIYQDPDVLD 511
Y E IV + +E +E K G E + PDVLD
Sbjct: 479 Y-CEDTGEPIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLD 537
Query: 512 TWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFS 571
WF S P++++ +P + + FK+ +P + G D W + +G G P+
Sbjct: 538 VWFDSGSMPYASIHYPFEN-EKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYK 596
Query: 572 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLT- 630
+V HG D +GRKMSK+LGNV+DP+ I ++GAD LR ++ +DL S E L
Sbjct: 597 NVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASSDPWEDLRFSDEILKQ 656
Query: 631 ANKAFTNKLWNAGKFIL 647
+ + WN +F+L
Sbjct: 657 VVEKYRKIRWNTYRFLL 673
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 275 bits (706), Expect = 2e-86
Identities = 100/155 (64%), Positives = 121/155 (78%)
Query: 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEK 149
FVI PPPNVTGSLHMGHA+ T++DI+ RY RMKG LW PGTDHAGIATQ+VVEK
Sbjct: 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEK 60
Query: 150 MLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAV 209
L EG R +L R+EF ++ WEWKE+ GG I Q+KRLGAS DW+RE FT+D LSRAV
Sbjct: 61 KLGIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAV 120
Query: 210 VEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244
EAF+RL+EKGLIY+ + +VNW P L+TA+SD+EV
Sbjct: 121 QEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV 155
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 |
| >gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 267 bits (686), Expect = 6e-78
Identities = 185/684 (27%), Positives = 293/684 (42%), Gaps = 134/684 (19%)
Query: 59 LPKTFDFTS-EERIYNWWESQGYFKPNFER--GSDPFVISMPPPNVTGSLHMGHAMFVTL 115
+ DF + EE + +W+ F+ + E G FV PP G H GH + T+
Sbjct: 7 VDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTI 66
Query: 116 EDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRV----ELSRDEFTKR-- 169
+D++ RY MKG G D G+ +L VEK L GI E ++F ++
Sbjct: 67 KDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKEL---GISGKKDIEEYGIEKFNEKCR 123
Query: 170 --VW----EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIY 223
V EW+E +RLG D+ TLD + +V A +L++KGL+Y
Sbjct: 124 ESVLRYTDEWEE--------YTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLY 175
Query: 224 QGSYMVNWSPNLQTAVSDLEVE--YSEEPGTLYYIKYRVAGRSD-FLTIATTRPETLFGD 280
+G +V + P +T +S+ EV Y + Y+K+++ G + +L TT P TL +
Sbjct: 176 KGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSN 235
Query: 281 VALAVNP---------QDEHY-----------------------SQFIGMMAIVPMTYGR 308
+ALAV+P E Y S+ G+ P Y
Sbjct: 236 LALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFA 295
Query: 309 HVP----IISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGL 364
++ +V E GTG++ I+P +D+ + +K GLP++ ++ DG E
Sbjct: 296 DEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPD 355
Query: 365 FRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSK---QWFVTMEP 421
+ G +A K++ DL+E GL K E + P R PL+ WF+ +
Sbjct: 356 YAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCD---TPLIYYATESWFIRVTK 412
Query: 422 LAEKALHAVEKGELTIMPE-----RFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
+ ++ L +K + PE RF K WL N +DW ISR +WG +P+W
Sbjct: 413 IKDRMLELNQK--INWYPEHIKDGRFGK----WLENARDWNISRNRYWGTPLPIW-RCED 465
Query: 477 EEEYIVARNADEALEKAHQKYGKNVEI---YQD---------------PDVLDTWFSSAL 518
V + +E LE+ + + +++ Y D PDV+D WF S
Sbjct: 466 CGRIDVIGSIEE-LEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGS 524
Query: 519 WPFSTLGWPDVSADDFKKFYPTTMLETGHD--------------ILFFWVARMVMMGIEF 564
P++ L +P + + F+K +P + G D LF
Sbjct: 525 MPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALF------------- 571
Query: 565 TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFT-ISLGTAGQDLS 623
P+ +V +HG + D G+KMSK+LGN +DP + ++GADALR+ +S +DL
Sbjct: 572 -DRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLR 630
Query: 624 LSIE--RLTANKAFTNKLWNAGKF 645
S + R K LWN F
Sbjct: 631 FSEDGVREVVRKFL-LTLWNVYSF 653
|
Length = 975 |
| >gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 1e-65
Identities = 203/660 (30%), Positives = 298/660 (45%), Gaps = 153/660 (23%)
Query: 56 KDT--LPKTFDF-------TSEERIYNWWESQGYF----KPNFERGSDPFVISMPPPNVT 102
KDT LPKT DF E I WE + + N +G F++ PP
Sbjct: 5 KDTLNLPKT-DFPMRANLPKREPEILKRWEENDLYQKIREAN--KGKPKFILHDGPPYAN 61
Query: 103 GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD-HAGIATQLVVEKMLAAEGIKRVEL 161
G +H+GHA+ L+DI+V+ M G ++PG D H G+ +L VEK L G K +L
Sbjct: 62 GDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCH-GLPIELKVEKKL---GKKGKKL 117
Query: 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGL 221
S EF K+ E+ + KRLG DW T+D + ++ A ++ +KG
Sbjct: 118 SAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGY 177
Query: 222 IYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRV-------AGRSDFLTIATTRP 274
+Y+G V W P+ +A+++ EVEY ++ Y+ + V A + L I TT P
Sbjct: 178 LYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTP 237
Query: 275 ETLFGDVALAVNP---------QDEHY---------------------------SQFIGM 298
TL + A+AV+P + E + G+
Sbjct: 238 WTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELEGL 297
Query: 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 358
+A P Y R P+I +V + GTG++ +PGH +DY++ +K GL +LN ++ DG
Sbjct: 298 VAQHPF-YDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRY 356
Query: 359 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP---RSQRGGEVIEPLV---S 412
E A LF GL F+A K+ LEE G +K+E T P R++ +P++ +
Sbjct: 357 TEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTK------KPVIFRAT 410
Query: 413 KQWFVTME--PLAEKALHAVEKGELTIMPERFEK-IYNHWLSNIKDWCISRQLWWGHRIP 469
QWF++M+ L E+AL A+EK + +P + I + + N DWCISRQ WG IP
Sbjct: 411 PQWFISMDKKGLREQALKAIEKVKW--IPAWGKNRIES-MVENRPDWCISRQRTWGVPIP 467
Query: 470 VWY------IVGKEE--EYIVAR------------NADEALEKAHQKYGKNVEIYQDPDV 509
++Y + E E++ +A E L +Y K D+
Sbjct: 468 IFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKE------TDI 521
Query: 510 LDTWFSSALWPFST----------LGWPDVSADDFKKFYPTTMLETGHD---------IL 550
LD WF S S+ LG+P AD Y LE G D +L
Sbjct: 522 LDVWFDSG----SSHAAVLEQRPELGYP---AD----LY----LE-GSDQHRGWFQSSLL 565
Query: 551 FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR 610
+ G P+ V HG D +GRKMSK+LGNVIDP D IK++GAD LR
Sbjct: 566 -------TSVAT--RGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILR 616
|
Length = 912 |
| >gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 3e-53
Identities = 179/707 (25%), Positives = 282/707 (39%), Gaps = 118/707 (16%)
Query: 48 AVAAAENNKDTL--PKTFDF-------TSEERIYNWWESQGYFKPNFERGSD--PFVISM 96
A + K TL P+T F E I WE +K E+ FV+
Sbjct: 2 TDTTAMDYKKTLNLPQT-AFPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHD 60
Query: 97 PPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGI 156
PP G++H+GHA+ L+D++VR +M G ++PG D G+ + +E+ A+G
Sbjct: 61 GPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGK 120
Query: 157 KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216
+ E+ EF K E+ + + KRLG DW T+D + F +
Sbjct: 121 NKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKF 180
Query: 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLY--------------------- 254
KG +Y+GS V WS +TA+++ E+EY + E T++
Sbjct: 181 AAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIW 240
Query: 255 --------------------YIKYRVAG--------RSDFLTIATTRPETLFGDVALAVN 286
Y Y V G + L +A E++ +
Sbjct: 241 TTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESF 300
Query: 287 PQDEHYS--QFIGMMAIVPMT----YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL 340
+ ++ P+ Y VP++ +V + GTG + +PGH D+ +
Sbjct: 301 ERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNV 360
Query: 341 ARKLGL-PILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSD--------LEETGLAVKKE 391
K G I +++DG E A F G + K + D L E GL + +
Sbjct: 361 WMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARG 420
Query: 392 PHTLRVPRSQRGGEVIEPLV---SKQWFVTMEP-------LAEKALHAVEKGELTIMPER 441
P S R + P++ + QWF++M+ L +AL A++K +P
Sbjct: 421 RLKHSYPHSWRSKK---PVIFRNTPQWFISMDKDLGDGTTLRSRALDAIDK--TRFVPAA 475
Query: 442 FEKIYNHWLSNIKDWCISRQLWWGHRIPVWY------IVGK----------EEEYIVARN 485
+ + + + DW ISRQ WG IP++ ++ + EEE A
Sbjct: 476 GQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAEDGEILMDEEVNARIADAFEEEGADAWF 535
Query: 486 ADEALEKAHQKYGKNVEIYQDPDVLDTWFSS-ALWPFSTLGWPDVSADDFKKFYPTTM-L 543
A+ A E+ + N E + D+LD WF S + F L D K +P + L
Sbjct: 536 AEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAF-VLEDRP----DLK--WPADLYL 588
Query: 544 ETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE 603
E G D W ++ G P+ V HG D +G KMSK+LGN + P D IK+
Sbjct: 589 E-GSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQ 647
Query: 604 FGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNL 650
GAD LR ++ D + E L KL N +++L NL
Sbjct: 648 SGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNL 694
|
Length = 961 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 2e-47
Identities = 71/214 (33%), Positives = 102/214 (47%), Gaps = 41/214 (19%)
Query: 412 SKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVW 471
++QWF M EK L A+ +G+ I+PE + WL ++ DW ISRQ +WG +P
Sbjct: 139 TEQWFFDMPKFKEKLLKALRRGK--IVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP-- 194
Query: 472 YIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA 531
DV D WF S + P +LG+P+
Sbjct: 195 -----------------------------------EDVFDVWFDSGIGPLGSLGYPEEKE 219
Query: 532 DDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTL 591
FK YP G DIL W + M + G +P ++ +HG + D G+KMSK+
Sbjct: 220 W-FKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSK 278
Query: 592 GNVIDPIDTIKEFGADALRFTI-SLGTAGQDLSL 624
GNVIDP D ++++GADALR+ + SL G D+ L
Sbjct: 279 GNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 4e-43
Identities = 152/676 (22%), Positives = 252/676 (37%), Gaps = 162/676 (23%)
Query: 68 EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKG 127
E++ WE F+ + + + F ++M P + G +H GH T+ ++ R+ RMKG
Sbjct: 4 EKKWQKRWEEAHIFEADPDD-REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKG 62
Query: 128 RPTLW-----LPGTDHAGIATQLVVEKMLAAE------GIKRVELSRDEFTKRVWEWKEK 176
+ L+ + GT G+A + L + I R EL + + E
Sbjct: 63 KNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEY---IVEY 119
Query: 177 YGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQ 236
+ S K +G S DW R T D R + +L E GLI +G + V + P
Sbjct: 120 FSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDG 179
Query: 237 TAVSDLEVEYSEE--PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHY-- 292
V D ++ E IK+ + + + AT RPET++G VNP +
Sbjct: 180 NPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIA 239
Query: 293 --------------------------------SQFIGMMAIVPMTYGRHVPIISDKYVDK 320
QFIG P+ VPI+ ++VD
Sbjct: 240 EVGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVG-PEVPILPAEFVDT 298
Query: 321 EFGTGVLKISPGHDHNDYLLARKLG--------------LPILNVMNKD----------- 355
GTGV+ P H +DY+ L + + +++ D
Sbjct: 299 TKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIV 358
Query: 356 ----------------------------GTLNEVAGLFRGLDRFEARKKLWSDLEETGLA 387
G + ++G+ EA++K+ +DL + GLA
Sbjct: 359 EEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKADLIDAGLA 418
Query: 388 -VKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTM--EPLAEKALHAVEKGELTIMPERFEK 444
V E V + G + I +V QWFV E E A +E + I+PE +
Sbjct: 419 DVMYEFSESPV-ICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEG--MRIIPEEVKN 475
Query: 445 IYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAH--------QK 496
+ + +KDW R+ G R+P W +E++++ +D + A+ +
Sbjct: 476 AFEGKIDWLKDWACCRRYGLGTRLP-W-----DEKWLIESLSDSTIYMAYYTIAHYLNKD 529
Query: 497 YGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA------------DDFKKFYPTTMLE 544
Y N ++ + D F LG DV +F+ +YP
Sbjct: 530 YYGNEQM--TDEFFDYIF---------LGKGDVKNTNIPLPAIQKLRREFEYWYPLDWRI 578
Query: 545 TGHD-----ILFFWVARMVMMGIEF--TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 597
+G D + F+ + + +F G V +V L +G+KMSK+ GNV+
Sbjct: 579 SGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVML-------EGKKMSKSKGNVLTL 631
Query: 598 IDTIKEFGADALRFTI 613
+++FGAD R I
Sbjct: 632 EQAVEKFGADVARLYI 647
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-41
Identities = 163/708 (23%), Positives = 258/708 (36%), Gaps = 217/708 (30%)
Query: 68 EERIYNWWESQGYFKPNFERGSDP--FVISM-PPPNVTGSLHMGHAMFVTLEDIMVRYHR 124
EE+ WE F+ + + +V+ M P P+ G+LH+GH T+ D++ RY R
Sbjct: 11 EEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPS--GALHVGHVRNYTIGDVIARYKR 68
Query: 125 MKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQ 184
M+G L G D G L AE +++ D +W + Q
Sbjct: 69 MQGYNVLHPMGWDAFG----------LPAENAA-IKIGTDPA-----KWTYYNIAYMKKQ 112
Query: 185 IKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244
+K LG S DW RE T D + + + F++L+EKGL Y+ VNW P T +++ +V
Sbjct: 113 LKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQV 172
Query: 245 -------------------------EYSEE------------PGTLY------------Y 255
+Y++E P T+ Y
Sbjct: 173 IDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGY 232
Query: 256 IKYRVAGRSDF---LTIATTRPETLFG----DVA--------LAVNPQDEHYSQFI---- 296
V + + + TTRP+TLFG +A L NPQ ++F+
Sbjct: 233 EVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECK 292
Query: 297 -------------------GMMAIVPMTYGRHVPIISDKYVDKEFGTG-VLKISPGHDHN 336
G AI P+ G +P+ YV E+GTG V+ + P HD
Sbjct: 293 GTGVVESVPAHAEKDGVFLGGYAINPVN-GEKIPVWIANYVLMEYGTGAVMGV-PAHDER 350
Query: 337 DYLLARKLGLPILNV-MNKDGTLNEV---------AGLFRGLDRFEARKKLWSDLEETGL 386
D A K LPI V M + +V +G GLD EA+ K+ L + GL
Sbjct: 351 DLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRGL 410
Query: 387 AVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIY 446
QWFV Y
Sbjct: 411 G--------------------------QWFVN---------------------------Y 417
Query: 447 NHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEK-------------- 492
++DW SRQ +WG IP+ + E+ V ++ L
Sbjct: 418 R-----LRDWLKSRQRYWGEPIPIIH----CEDCGVVPVPEDWLPVKLPERVRGLGTGSP 468
Query: 493 --AHQKYGKNVE-----IYQDPDVLDTWFSS-----ALWPFSTLGWPDVSADDFKKFYPT 540
+++ Y++ D +DT+ S + LG ++F +YP
Sbjct: 469 LPWDEEW-VIESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPV 527
Query: 541 TMLETGHDI-----LFFWVARMVMMGIEFTGS-VPFSHVYLHGLIRDSQGRKMSKTLGNV 594
+ G + L+F + PF + G++ +G KMSK+ GNV
Sbjct: 528 DLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNV 587
Query: 595 IDPIDTIKEFGADALR-FTISLGTAGQDLSLSIERLTANKAFTNKLWN 641
+DP + ++++GAD +R + + QDL S + + F ++WN
Sbjct: 588 VDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWN 635
|
Length = 814 |
| >gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 6e-37
Identities = 166/656 (25%), Positives = 265/656 (40%), Gaps = 125/656 (19%)
Query: 59 LPKTFDF-TSEERIYNWWESQGYFKPNFER--GSDPFVISMPPPNVTGSLHMGHAMFVTL 115
K F F EE+I + W FK +R G ++ PP TG H GH + T+
Sbjct: 4 EGKDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTI 63
Query: 116 EDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRV------------ELSR 163
+DI+ RY M G G D G+ + ++K L GIKR E R
Sbjct: 64 KDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKL---GIKRRDDVLKMGIDKYNEECR 120
Query: 164 DEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIY 223
T+ EW EK + R G D+ + T+D + +V F +L EKGL+Y
Sbjct: 121 SIVTRYSKEW-EK-------TVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVY 172
Query: 224 QGSYMVNWSPNLQTA------------VSDLE----------------VEYSEEPGTL-- 253
+G ++ +S +T VSD V ++ P TL
Sbjct: 173 KGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPS 232
Query: 254 ----------YYIKYRVAGRSDFLTIATTRPETLFGDVALAVNP-----QDEHY---SQF 295
Y+K R +A +R L + E Y ++
Sbjct: 233 NLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKV 292
Query: 296 IGMMAIVPMTYGRHVPI--------------ISDKYVDKEFGTGVLKISPGHDHNDY--L 339
G ++V Y P+ ++D YV + GTGV+ +P +DY
Sbjct: 293 PGS-SLVGKKY---EPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVC 348
Query: 340 LARKL---GLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLR 396
LA + G + ++ DG E F G +A K + + ++ G VK T
Sbjct: 349 LANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHS 408
Query: 397 VPRSQRGGEVIEPLVSK---QWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNI 453
P R PL+ + WFV +E + ++ L ++ + EK +++WL N
Sbjct: 409 YPFCWRSDT---PLIYRAVPSWFVKVEEIKDRLLENNKQTYW-VPDYVKEKRFHNWLENA 464
Query: 454 KDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKA--------HQKYGKNVEI-- 503
+DW +SR +WG +P+W I EE +V + E LEK H+ + ++ I
Sbjct: 465 RDWAVSRSRFWGTPLPIW-ISDDGEEVVVIGSIAE-LEKLSGVKVTDLHRHFIDHITIPS 522
Query: 504 YQDP---------DVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWV 554
+ P DV D WF S P++ + +P + + F+K +P + G D W
Sbjct: 523 SRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQTRGWF 582
Query: 555 ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR 610
++++ F ++ +GL+ G+KMSK+L N DP + I ++GADALR
Sbjct: 583 YTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALR 638
|
Length = 1159 |
| >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-36
Identities = 66/202 (32%), Positives = 106/202 (52%), Gaps = 25/202 (12%)
Query: 412 SKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVW 471
+ QWF+ + + ++ L A +K + +PE + + +WL N +DWCISRQ +WG IPVW
Sbjct: 150 TPQWFIRVTKIKDRLLEANDK--VNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVW 207
Query: 472 YIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA 531
Y E + + PDVLD WF S P++ L +P +
Sbjct: 208 YCEDCGEVLVR----------------------RVPDVLDVWFDSGSMPYAQLHYPFEN- 244
Query: 532 DDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTL 591
+DF++ +P + G D W ++++ G P+ +V +HG + D GRKMSK+L
Sbjct: 245 EDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSL 304
Query: 592 GNVIDPIDTIKEFGADALRFTI 613
GN +DP + + ++GADALR +
Sbjct: 305 GNYVDPQEVVDKYGADALRLWV 326
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 3e-36
Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
F ++ PPP GSLH+GHA+ + D + RY RM+G +LPG D G+ +L E+
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 151 LAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210
G K+ + +EF + E+ E+ G +RLG S DW+ E T + + S+AV
Sbjct: 61 G---GRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVE 117
Query: 211 EAFIRLHEKGLIYQGSYMVNWSPN 234
F RL+EKGLIY+G++ V +
Sbjct: 118 LIFSRLYEKGLIYRGTHPVRITEQ 141
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 6e-35
Identities = 130/481 (27%), Positives = 184/481 (38%), Gaps = 144/481 (29%)
Query: 105 LHMGHAMFVTLEDIMVRYHRMKGRPTLWLP------GTDHAGIATQLVVEKMLAAEGIKR 158
LH+GH T+ D++ RY RM+G L+ P GT GIA E I R
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLF-PMAFHVTGTPILGIA-----------ERIAR 48
Query: 159 VELSRDEFTKRVWEWKEKYG--------------------GTITSQIKRLGASCDWTRER 198
D T + +K YG +KR+G S DW RE
Sbjct: 49 ----GDPET--IELYKSLYGIPEEELEKFKDPEYIVEYFSEEAKEDMKRIGYSIDWRREF 102
Query: 199 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYY--I 256
T D + S+ + F +L EKGLI +GS+ V + PN V D ++ EEP + Y I
Sbjct: 103 TTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEYTLI 162
Query: 257 KYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHY------------------------ 292
K+ + AT RPET+FG L VNP D Y
Sbjct: 163 KFEESEDLILPA-ATLRPETIFGVTNLWVNP-DATYVKAEVDGEKWIVSKEAAEKLSFQD 220
Query: 293 -----------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLA 341
S+ IG P+T G+ VPI+ +VD + GTGV+ P H DY+
Sbjct: 221 RDVEIIEEIKGSELIGKKVKNPVT-GKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVAL 279
Query: 342 RKLGL---------PI-------------------LNVMNKD------------------ 355
R L PI L + +++
Sbjct: 280 RDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHK 339
Query: 356 GTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVK-----KEPHTLRVPRSQRGGEVIEPL 410
G L E G + G EAR+K+ DL E G+A P R G E + +
Sbjct: 340 GVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRC-----GTECVVKV 394
Query: 411 VSKQWFVTM--EPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRI 468
V QWF+ E A A++ + I+PE + K + + + +KD +R+ G R+
Sbjct: 395 VKDQWFIDYSDPEWKELAHKALDN--MEIIPEEYRKEFENTIDWLKDRACARRRGLGTRL 452
Query: 469 P 469
P
Sbjct: 453 P 453
|
Length = 897 |
| >gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 1e-34
Identities = 179/709 (25%), Positives = 266/709 (37%), Gaps = 171/709 (24%)
Query: 68 EERIYNWWESQGYFKPNFERGSDPFVI-SM-PPPNVTGSLHMGHAMFVTLEDIMVRYHRM 125
EE+ W+ FK + + I SM P P +G+LHMGH T+ D++ RY+RM
Sbjct: 7 EEKWQQKWDENKTFKVTDDSSKPKYYILSMFPYP--SGALHMGHVRNYTITDVLSRYYRM 64
Query: 126 KGRPTLWLPGTDHAGIATQLVVEKMLAAEG--IKRVELSRDEFTKRVWEWKEKYGGTITS 183
KG L G D G L AE IKR +W + +
Sbjct: 65 KGYNVLHPIGWDAFG----------LPAENAAIKR--------GIHPAKWTYENIANMKK 106
Query: 184 QIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAV---- 239
Q++ LG S DW RE T D + + F+ L EKGL Y VNW PN T +
Sbjct: 107 QLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQ 166
Query: 240 ---------SDLEVE-------------YSEE-----------PGTL------------- 253
D VE Y+EE P ++
Sbjct: 167 VDSDGRSWRGDTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEG 226
Query: 254 YYIKYRVAGRSDFLTIATTRPETLFGDVALAV-------------NPQ------------ 288
I +++A + +T+ TTRP+T+FG LA+ NP+
Sbjct: 227 VEITFKIADHDEKITVFTTRPDTIFGVTYLALAPEHPLVEKAAENNPKVAAFIKKILNKT 286
Query: 289 --------DEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL 340
E G+ AI P+T G +PI YV E+GTG + P HD D+
Sbjct: 287 VAERTKATKEKKGVDTGIKAIHPLT-GEKIPIWVANYVLMEYGTGAVMGVPAHDERDFEF 345
Query: 341 ARKLGLPILNVM---NKDGTLNE---------VAGLFRGLDRFEARKKLWSDLEETGLAV 388
A+K GLPI V+ KD +L +G F GL+ EAR + LE+ G
Sbjct: 346 AQKYGLPIKPVIDPAEKDLSLTAAYTEDGVLVNSGEFNGLNSSEARNAIIDMLEKEGKGK 405
Query: 389 KKEPHTLR---VPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKI 445
+K + LR R + GE I + + V P+ E+ L V E ++
Sbjct: 406 RKVNYRLRDWGFSRQRYWGEPIPIIHCEDGGVV--PVPEEDL-PVILPED----VVYDGD 458
Query: 446 YNHWLSNIKDW-------CISRQL--------WWGHRIPVWYIVGKEEEYIVARNADEAL 490
LS I +W C L + G WY + Y+ +N D
Sbjct: 459 GGSPLSRIPEWVNVTCPSCGKPALRETDTMDTFAG---SSWYYLR----YLDPKNTDGPF 511
Query: 491 EKAHQKYGKNVEIY---QDPDVLDTWFSSALWPF-STLGWPDVSADD-FKKFYPTTML-- 543
+K +Y V++Y + +L ++ F +G+ V+ + FKK M+
Sbjct: 512 DKEKAEYWLPVDLYIGGIEHAILHLLYARFFHKFLRDIGY--VNTKEPFKKLINQGMVLG 569
Query: 544 -ETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK 602
+ ++ KMSK+ GN IDP + ++
Sbjct: 570 FYYPPNGKVPADVLTERDEKGK---DKAGGELVYVGY-----EKMSKSKGNGIDPQEIVE 621
Query: 603 EFGADALR-FTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNL 650
+GADALR F + +G L + L + F +++WN I L
Sbjct: 622 SYGADALRLFIMFMGPIAASLEWNESGLEGARRFLDRVWNLVYEITGEL 670
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches [Protein synthesis, tRNA aminoacylation]. Length = 842 |
| >gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 5e-33
Identities = 104/351 (29%), Positives = 153/351 (43%), Gaps = 38/351 (10%)
Query: 293 SQFIGMMAIVPMTYGRHVP-IISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNV 351
S G I P+ Y R P +I Y+ E GTG++ +PGH DY+ K GLP+L+
Sbjct: 307 SDLEGCRYIHPL-YNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSP 365
Query: 352 MNKDGTLNEVAGLFRGLDRF-EARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410
++ G E AG F GL E + L+E G + +E + + P R +
Sbjct: 366 VDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFR 425
Query: 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV 470
++QWF ++E + AL A++K + +P + E +S DWCISRQ WG IPV
Sbjct: 426 ATEQWFASVEGFRQAALDAIDK--VKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPV 483
Query: 471 WYIVGKEEEYIVARNADEALEKAHQK------YGKNVEI----YQD--------PDVLDT 512
+Y V +E + QK Y ++ Y+D D +D
Sbjct: 484 FYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDV 543
Query: 513 WFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSH 572
WF S W V YP + G D W ++ + G P+
Sbjct: 544 WFDSG------SSWAGVLGSREGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKS 597
Query: 573 VYLHGLIRDSQGRKMSKTLGNVIDPIDTI------KE---FGADALRFTIS 614
V HG + D +G KMSK+LGNV+DP I K+ +GAD LR ++
Sbjct: 598 VLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVA 648
|
Length = 974 |
| >gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 9e-26
Identities = 112/435 (25%), Positives = 164/435 (37%), Gaps = 161/435 (37%)
Query: 75 WESQGYFKPNFERGSDPF-VISM-PPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTL- 131
WE FK E S + V+ M P P +G LHMGH T+ D++ RY RM+G L
Sbjct: 18 WEENKTFKTT-EDSSKKYYVLDMFPYP--SGGLHMGHVRNYTIGDVIARYKRMQGYNVLH 74
Query: 132 ---W----LPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK---RVWEWK--EKYGG 179
W LP A AA IK T W ++
Sbjct: 75 PMGWDAFGLP-------AEN-------AA--IK---------TGTHPAEWTYENIANM-- 107
Query: 180 TITSQIKRLGASCDWTRERFTLD------EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSP 233
Q+K LG S DW+RE T D Q F++L+EKGL Y+ VNW P
Sbjct: 108 --KKQLKSLGFSYDWSREIATCDPEYYKWTQ------WIFLKLYEKGLAYRKESPVNWCP 159
Query: 234 NLQTAVSDLEV-------------------------EYSEE-----------P------- 250
T +++ +V +Y++E P
Sbjct: 160 VDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQ 219
Query: 251 --------GTLYYIKYRVAGRSDFLTIATTRPETLFG----------DVALAVNPQDEHY 292
G + ++V + + + TTRP+TLFG + + Q+
Sbjct: 220 RNWIGRSEGA--EVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAV 277
Query: 293 SQFI-----------------------GMMAIVPMTYGRHVPI-ISDKYVDKEFGTGVLK 328
+ FI G+ AI P+T G +P+ I+D YV ++GTG +
Sbjct: 278 AAFIEECKKKSDLERQTETKEKTGVFTGLYAIHPLT-GEKIPVWIAD-YVLMDYGTGAVM 335
Query: 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA-------------GLFRGLDRFEARK 375
P HD D+ A+K GLPI V+ +++ G GLD EA++
Sbjct: 336 AVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEEAKE 395
Query: 376 KLWSDLEETGLAVKK 390
+ + LEE GL +K
Sbjct: 396 AIIAWLEEKGLGKRK 410
|
Length = 805 |
| >gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 4e-25
Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 17/238 (7%)
Query: 66 TSEERIYNWWESQGYFKPNFERG-SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHR 124
T E I WE +K +R + F + PP G LH+GHA+ L+D + RY
Sbjct: 7 TREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQL 66
Query: 125 MKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQ 184
++G+ ++PG D G+ +L V + L E R EL+ + + ++ +K T
Sbjct: 67 LQGKKVHYVPGWDCHGLPIELKVLQSLDQE--ARKELTPIKLRAKAAKFAKKTVDTQRES 124
Query: 185 IKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244
KR G DW TLD + A +E F ++ G IY+G V+WSP+ +TA+++ E+
Sbjct: 125 FKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAEL 184
Query: 245 EYSE-EPGTLYYIKYRVAGRSD-------------FLTIATTRPETLFGDVALAVNPQ 288
EY E Y+ + V S+ L I TT P T+ + A+AVN +
Sbjct: 185 EYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDK 242
|
Length = 974 |
| >gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-24
Identities = 92/390 (23%), Positives = 174/390 (44%), Gaps = 49/390 (12%)
Query: 308 RHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL--P----ILNVMNKDGTLNEV 361
R I++D +V + GTG++ +P + +D+ + +K G+ P ++ ++ +G
Sbjct: 418 RAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNE 477
Query: 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQ---WFVT 418
+ L EA + L+ + P R PL+ + WF+
Sbjct: 478 VEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDT---PLIYRAIPAWFIR 534
Query: 419 MEPLAEKALHAVEKGELTI-MPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
+ + V+ E T +P EK +++W+ + KDWCISR +WG IP+W +
Sbjct: 535 VSNSTNEL---VKNNETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIW--ADE 589
Query: 477 EEEYIVARNADEALEKA---------HQKYGKNVEIYQD-----------PDVLDTWFSS 516
+ E ++ + + LE+ H+ + ++EI P+V D WF S
Sbjct: 590 KMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFES 649
Query: 517 ALWPFSTLGWP-DVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYL 575
P++ + +P +DF K +P + G D W ++++ PF ++
Sbjct: 650 GSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLIC 709
Query: 576 HGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTAN--- 632
+GL+ S G+KMSK L N DP+ + ++GAD+LR + A + +L + N
Sbjct: 710 NGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVV 769
Query: 633 KAFTNKLWNAGKFILQNLPSQNDISRWEIL 662
K+F +++ +F Q +++R+E L
Sbjct: 770 KSFILPFYHSFRFFSQ------EVTRYECL 793
|
Length = 1205 |
| >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 2e-18
Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 98 PPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK 157
PP G H GHA+ L+DI+ RY M+G PG D G+ +L VEK L G K
Sbjct: 9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKK 68
Query: 158 RVE-LSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216
+E + EF + E+ +Y Q +RLG DW T+D + +V F +L
Sbjct: 69 DIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQL 128
Query: 217 HEKGLIYQGSYMVNW 231
HEKGL+Y+G +V W
Sbjct: 129 HEKGLLYRGYKVVPW 143
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 |
| >gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 2e-18
Identities = 135/545 (24%), Positives = 190/545 (34%), Gaps = 149/545 (27%)
Query: 1 MILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLP 60
+ L +S + P SSY + +
Sbjct: 25 LFLVVSSAQT-PASASSYFRRSRRGGVSRS------LTRRAFAAPSALTSTTAKTTPAAK 77
Query: 61 KTFDFTS-EERIYNWWESQGYFK-PNFERGSDP--FVISMPPPNVTGSLHMGHAMFVTLE 116
+ + F E + +WE F+ P+ S P +V+ M P LH+GH T
Sbjct: 78 RAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTAT 137
Query: 117 DIMVRYHRMKGRPTLWLPGTDHAGI-ATQLVVE-----KMLAAEGIKRVELSRDEFTKRV 170
DI+ RY RM+G L G D G+ A Q +E K+ + I R
Sbjct: 138 DILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFR---------- 187
Query: 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ------ 224
SQ+K LG S DW RE T + + + F++L ++GL YQ
Sbjct: 188 ------------SQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVN 235
Query: 225 ---------------------GSYMVNWSPNLQ-----TAVSDLEVEYSEE---PGTLYY 255
G + V P Q TA +D +E ++ P ++
Sbjct: 236 WCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKE 295
Query: 256 IKYRVAGRS-----DF-------------LTIATTRPETLFGDVALAVNP---------- 287
++ GRS DF +T+ TTRP+TLFG L V P
Sbjct: 296 MQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTT 355
Query: 288 -------------------------QDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEF 322
Q E F G AI P T G +PI YV +
Sbjct: 356 AEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAINPAT-GEAIPIWVADYVLGSY 414
Query: 323 GTGVLKISPGHDHNDYLLARKLGLPILNVM-NKDGTLNEV------AGL----------F 365
GTG + P HD D+ A+K LPI V+ DG ++ G+
Sbjct: 415 GTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDI 474
Query: 366 RGLDRFEARKKLWSDLEETGLAVKKEPHTLR---VPRSQRGGEVIEPLVSKQWFVTMEPL 422
GL EA KK+ LEETG KK + LR R + GE I P+V + P+
Sbjct: 475 NGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPI-PVVFLEDSGEPVPV 533
Query: 423 AEKAL 427
E L
Sbjct: 534 PESDL 538
|
Length = 963 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-16
Identities = 64/265 (24%), Positives = 98/265 (36%), Gaps = 56/265 (21%)
Query: 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL 450
EP L PRS G E + +F + +K L +++ P ++ WL
Sbjct: 160 EPTELINPRSAISGSTPELKEEEHYFFRLSKFQDKLLEWIKENPD-EPPSNVNEVVLSWL 218
Query: 451 SN-IKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPD- 508
+KD I+R L WG +P DP
Sbjct: 219 KEGLKDLSITRDLDWGIPVP-----------------------------------GDPGK 243
Query: 509 VLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLET-----GHDILFF----WVARMVM 559
V+ WF + + S + + + +KKF+ G DI+ F W A ++
Sbjct: 244 VIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEIVHFIGKDIIRFHAIYWPA--ML 301
Query: 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR-FTISLGTA 618
M + V+ HG + +G KMSK+ GNV+DP + + +G DALR +
Sbjct: 302 MAAGLP---LPTQVFAHGWLTV-EGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPE 357
Query: 619 GQDLSLSIERLTA--NKAFTNKLWN 641
G+D S E N N L N
Sbjct: 358 GKDGDFSWEDFVERVNSELANDLGN 382
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 49/140 (35%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F I + P +G+LH+GH T+ DI+ RY RM+G L+ G D A L E
Sbjct: 2 FYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFD----AFGLPAEN-- 55
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVE 211
AA I R W E + Q+KR+G S DW RE T D + +
Sbjct: 56 AAIKIGRDPED----------WTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQW 105
Query: 212 AFIRLHEKGLIYQGSYMVNW 231
F++L+EKGL Y+ VNW
Sbjct: 106 LFLKLYEKGLAYKKEAPVNW 125
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 8e-14
Identities = 59/256 (23%), Positives = 93/256 (36%), Gaps = 65/256 (25%)
Query: 372 EARKKLWSDLEETGLAVKKEPHTLRVPRSQRG-GEVIEPLVSKQWFVTMEPLAEKALHAV 430
E ++ + L E G + E L +R E E + +F + ++ L +
Sbjct: 99 EIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWRE---EEHYFFRLSKFQDRLLEWL 155
Query: 431 EKGELTIMPERFEKIYNHWLSN-IKDWCISRQLW-WGHRIP-----VWYI-----VGKEE 478
EK I PE WL +KD I+R L+ WG +P V Y+ +G
Sbjct: 156 EKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIG--- 212
Query: 479 EYI-VARNADEALEKAHQKYGKNVEIYQ--DPDVLDTWFSSALWPFSTLGWPDVSADDFK 535
YI +E + E+ D++ F + WP
Sbjct: 213 -YISATGYYNEEWGNSWWWKDGWPELVHFIGKDII---------RFHAIYWP-------- 254
Query: 536 KFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI 595
ML +G + + HG + G+KMSK+ GNV+
Sbjct: 255 -----AML----------------LGAGLP---LPTRIVAHGYLTVE-GKKMSKSRGNVV 289
Query: 596 DPIDTIKEFGADALRF 611
DP D ++ +GADALR+
Sbjct: 290 DPDDLLERYGADALRY 305
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2 | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-13
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 51/177 (28%)
Query: 255 YIKYRVAGRSDFLTIATTRPETLFGD--VALAVN--------PQDEHYSQFI-------- 296
I ++V G + + + TTRP+TLFG +ALA ++ + FI
Sbjct: 4 EIDFKVEGSDEKIEVFTTRPDTLFGVTFLALAPEHPLAKKLAEKNPELAAFIEECKKTST 63
Query: 297 ---------------GMMAIVPMTYGRHVPI-ISDKYVDKEFGTGVLKISPGHDHNDYLL 340
G+ AI P+T G +PI I++ +V ++GTG + P HD D+
Sbjct: 64 IERTIATAEKEGIFTGLYAIHPIT-GEKIPIWIAN-FVLMDYGTGAVMAVPAHDQRDFEF 121
Query: 341 ARKLGLPILNV-MNKDGTL----NEVA----------GLFRGLDRFEARKKLWSDLE 382
A+K LPI V +DG E A G F GLD EA++ + LE
Sbjct: 122 AKKYNLPIKQVIKPEDGDEDDLIMEEAYTEKGILINSGEFDGLDSEEAKEAIAEKLE 178
|
This is a family of the conserved region of Leucine-tRNA ligase or Leucyl-tRNA synthetase, EC:6.1.1.4. Length = 178 |
| >gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-13
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 522 STLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHG 577
+ LG+ + FKKF+P + G DIL F W ++ +G+ V+ HG
Sbjct: 237 TALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMALGLP-----LPKKVFAHG 291
Query: 578 -LIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRF 611
+ KMSK+ GNV+DP + + +G DALR+
Sbjct: 292 WWLMK--DGKMSKSKGNVVDPEELVDRYGLDALRY 324
|
Length = 648 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 25/143 (17%)
Query: 501 VEIYQDPD-VLDTWFSSALWPF-STLGWPD---VSADDFKKFYPTTMLETGHDILFF--- 552
+ + DP V+ WF AL + + LG+PD + A+ F K++P + G DIL F
Sbjct: 212 IPVPGDPKHVIYVWFD-ALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAV 270
Query: 553 -WVARMVMMGIEFTGSVPFSHVYLHG-LIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR 610
W A ++ G+ V+ HG L D G KMSK+LGNVIDP D + E+G DA+R
Sbjct: 271 YWPAFLMAAGLPL-----PKRVFAHGFLTLD--GEKMSKSLGNVIDPFDLVDEYGVDAVR 323
Query: 611 F----TISLGTAGQDLSLSIERL 629
+ I GQD S E
Sbjct: 324 YFLLREIPF---GQDGDFSREAF 343
|
Length = 511 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 59/256 (23%), Positives = 92/256 (35%), Gaps = 76/256 (29%)
Query: 376 KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFV--TMEPLAEKALHAVEKG 433
L+ L E GLA KKE + + + QWF+ + EK L +EK
Sbjct: 105 WLFLKLYEKGLAYKKE-APVNWCK-----------LLDQWFLKYSETEWKEKLLKDLEK- 151
Query: 434 ELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV-----------WYIVGKEEEYIV 482
L PE + +W+ SRQ +WG IP WY Y
Sbjct: 152 -LDGWPEEVRAMQENWIG------CSRQRYWGTPIPWTDTMESLSDSTWYYAR----YTD 200
Query: 483 ARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTM 542
A N ++ E + D + +F+ +YP +
Sbjct: 201 AHNLEQPYEGD---------LEFDRE------------------------EFEYWYPVDI 227
Query: 543 LETGHD-----ILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 597
G + +L+ + P + + G++ +G KMSK+ GNV+ P
Sbjct: 228 YIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTP 286
Query: 598 IDTIKEFGADALRFTI 613
+ IK++GADA R I
Sbjct: 287 DEAIKKYGADAARLYI 302
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 5e-13
Identities = 70/273 (25%), Positives = 98/273 (35%), Gaps = 69/273 (25%)
Query: 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL 450
+P L P G E + +F + +K L E I P ++L
Sbjct: 166 DPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFL 225
Query: 451 SN-IKDWCISRQ-LWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPD 508
+KD I+R L WG +P DP
Sbjct: 226 KEGLKDLSITRTDLDWGIPVP-----------------------------------GDPG 250
Query: 509 -VLDTWF------SSAL--WPFSTLGWPDVSADDFKKFYPTTMLETGH----DILFF--- 552
V+ WF SAL +DFKKF+P E H DI+ F
Sbjct: 251 KVIYVWFDALIGYISALGELAEIGDD------EDFKKFWPADDTELVHFIGKDIIRFHAV 304
Query: 553 -WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR- 610
W A M+M G + ++ HG + G+KMSK+ GNV+DP + ++++G DALR
Sbjct: 305 YWPA-MLMA----AGLPLPTRIFAHGFLTLE-GQKMSKSRGNVVDPDELLEQYGVDALRY 358
Query: 611 FTISLGTAGQDLSLSIERLTA--NKAFTNKLWN 641
+ G D S E N NKL N
Sbjct: 359 YLARELPEGSDGDFSWEDFVERVNADLANKLGN 391
|
Length = 558 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 3e-12
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 28/142 (19%)
Query: 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
+++ P G H+GH D+ RY R++G +L GTD G +L EK
Sbjct: 6 KILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK- 64
Query: 151 LAAEGIKRVELSR---DEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERF--TLDEQL 205
EGI EL +EF K +++ L S D F T +
Sbjct: 65 ---EGITPQELVDKNHEEF-KELFKA--------------LNISFD----NFIRTTSPEH 102
Query: 206 SRAVVEAFIRLHEKGLIYQGSY 227
V E F++L+E G IY Y
Sbjct: 103 KELVQEFFLKLYENGDIYLREY 124
|
Length = 558 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 7e-12
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 22/156 (14%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F+I+ P V G H+GH D+ RY R++G L++ GTD G +L EK
Sbjct: 1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEK-- 58
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERF--TLDEQLSRAV 209
EG+ + E R + K L + + + F T E+ V
Sbjct: 59 --EGV-----TPQELVDR-----------YHEEFKELFKKFNISFDDFIRTTSERHKELV 100
Query: 210 VEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE 245
E F++L+EKG IY+G Y + + + + D VE
Sbjct: 101 QEFFLKLYEKGDIYEGEYEGWYCVSDERFLPDRYVE 136
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 2e-11
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 24/140 (17%)
Query: 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
+I+ P V G H+GH L D+ RY R++G L++ GTD G + E+
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE- 59
Query: 151 LAAEGIKRVELSRD--EFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSR 207
EG+ EL E K +++W L S D + R T +
Sbjct: 60 ---EGVTPQELCDKYHEIFKDLFKW--------------LNISFDYFIR---TTSPRHKE 99
Query: 208 AVVEAFIRLHEKGLIYQGSY 227
V E F +L+E G IY+G Y
Sbjct: 100 IVQEFFKKLYENGYIYEGEY 119
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-11
Identities = 43/143 (30%), Positives = 57/143 (39%), Gaps = 30/143 (20%)
Query: 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD-HAGIATQLVVEK 149
F I+ P G H+GHA D++ R+ R++G +L GTD H +++
Sbjct: 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEH-----GQKIQR 56
Query: 150 MLAAEGIKRVELSR---DEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERF--TLDEQ 204
GI EL+ F KR+WE L S D F T D +
Sbjct: 57 KAEEAGISPQELADRNSAAF-KRLWE--------------ALNISYD----DFIRTTDPR 97
Query: 205 LSRAVVEAFIRLHEKGLIYQGSY 227
AV E F RL G IY G Y
Sbjct: 98 HKEAVQEIFQRLLANGDIYLGKY 120
|
Length = 511 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 6e-11
Identities = 60/243 (24%), Positives = 87/243 (35%), Gaps = 72/243 (29%)
Query: 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTM----EPLAEKALHAVEKGELTIMPERFEKIY 446
EP L PR + G E S+ +F + + L E E G +
Sbjct: 160 EPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGS---PASNVKNKA 216
Query: 447 NHWLSN-IKDWCISRQL-WWGHRIP--------VW------YIVGKEEEYIVARNADEAL 490
+WL +KD I+R L +WG +P VW YI E
Sbjct: 217 QNWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGYISSLGIL----SGDTEDW 272
Query: 491 EKAHQKYGKNVEIYQ--DPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHD 548
+K ++ E+ D++ F T+ WP ML
Sbjct: 273 KK-WWNNDEDAELIHFIGKDIV---------RFHTIYWP-------------AML----- 304
Query: 549 ILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADA 608
MG+ + V+ HG + +G KMSK+LGNV+DP D + FGAD
Sbjct: 305 -----------MGLGLP---LPTQVFSHGYLTV-EGGKMSKSLGNVVDPSDLLARFGADI 349
Query: 609 LRF 611
LR+
Sbjct: 350 LRY 352
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 48/169 (28%), Positives = 67/169 (39%), Gaps = 27/169 (15%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
+I+ P G H+GHA L D+ RY R++G L++ GTD G +L E+
Sbjct: 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ-- 58
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERF--TLDEQLSRAV 209
EG+ EL +KY K L S D RF T DE+ V
Sbjct: 59 --EGLTPKELV------------DKYHEEFKDDWKWLNISFD----RFIRTTDEEHKEIV 100
Query: 210 VEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKY 258
+ F +L E G IY+ + P + + D VE GT
Sbjct: 101 QKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVE-----GTCPKCGS 144
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 4e-08
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 44/152 (28%)
Query: 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD-H--------- 138
F I+ P G H+GHA D + RY R++G +L GTD H
Sbjct: 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAE 62
Query: 139 -AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE 197
AG Q V+++ + G K EL WK+ L S D
Sbjct: 63 KAGKTPQEYVDEI--SAGFK--EL-----------WKK------------LDISYD---- 91
Query: 198 RF--TLDEQLSRAVVEAFIRLHEKGLIYQGSY 227
+F T DE+ + V + F +L+E+G IY+G Y
Sbjct: 92 KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEY 123
|
Length = 648 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 99 PNVTGSLHMGH-AMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK 157
P G LH+GH A D+ RY R+KG L++ G+D G +L +K EG+
Sbjct: 12 PYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK----EGV- 66
Query: 158 RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDW-TRERFTLDEQLSRAVVEAFIRL 216
+ E + Y K+LG S D TR T V E F++L
Sbjct: 67 ----TPQELADK-------YHEEHKEDFKKLGISYDLFTR---TTSPNHHEVVQEFFLKL 112
Query: 217 HEKGLIYQGSYMVNWSP 233
+E G IY+ + + P
Sbjct: 113 YENGYIYKKTIEQAYCP 129
|
Length = 556 |
| >gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 3e-07
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 569 PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR-FTISLGTAGQDLSLSIE 627
PF + G++ KMSK+ GNV+DP D I+++GAD R F + G +DL S
Sbjct: 559 PFKKLLTQGMV------KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDS 612
Query: 628 RLTANKAFTNKLWN 641
+ F ++W
Sbjct: 613 GVEGAYRFLQRVWR 626
|
Length = 805 |
| >gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 7e-07
Identities = 45/207 (21%), Positives = 87/207 (42%), Gaps = 13/207 (6%)
Query: 68 EERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRM 125
EE++ +W+S F + + + ++ PP TG H GH + ++D + RY
Sbjct: 78 EEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQ 137
Query: 126 KGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE----LSRDEFTKRVWEWKEKYGGTI 181
G G D G+ + +EK I + E + D + ++ KY
Sbjct: 138 CGFSVERKFGWDCHGLPIEYEIEK---ENNINKKEDILKMGIDVYNEKCRGIVLKYSNEW 194
Query: 182 TSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSD 241
++R+G D+ + T+D+ +V F L++ +Y+ ++ +S T +S+
Sbjct: 195 VKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISN 254
Query: 242 LE--VEYSEEPGTLYYIKYRVAGRSDF 266
E + Y + P I + + SDF
Sbjct: 255 FELNLNYKDTPDPSIIISFVLC--SDF 279
|
Length = 1205 |
| >gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 82/316 (25%), Positives = 124/316 (39%), Gaps = 66/316 (20%)
Query: 355 DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAV-KKEPHTLRVPRSQRGGEVIEPLVSK 413
DGT+ G + G EA+ + L E G A+ EP + RS G E + L +
Sbjct: 480 DGTML--VGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPEKKVMSRS--GDECVVAL-TD 534
Query: 414 QWFVTM--EPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVW 471
QW++T E +KA + K L R + H L + W SR G RIP W
Sbjct: 535 QWYLTYGEEEWKKKAEKCLSKMNLYSDETR--HGFEHTLGWLNQWACSRSFGLGTRIP-W 591
Query: 472 YIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSS--------ALWPFST 523
+E++++ +D + A Y + Q D+ SS +W F
Sbjct: 592 -----DEQFLIESLSDSTIYMA---YYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFVF 643
Query: 524 LGWP-----DVSAD-------DFKKFYPTTMLETGHDIL-----FFWVARMVMM------ 560
G P D+ A+ +F+ +YP + +G D++ F +
Sbjct: 644 CGGPLPKSSDIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWP 703
Query: 561 -GIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAG 619
G G H+ L+ KMSK+ GN + I+EF ADA RF +L AG
Sbjct: 704 RGFRCNG-----HLMLNS-------EKMSKSTGNFLTLRQAIEEFSADATRF--ALADAG 749
Query: 620 QDLS-LSIERLTANKA 634
+ + TAN A
Sbjct: 750 DGVDDANFVFETANAA 765
|
Length = 1084 |
| >gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase | Back alignment and domain information |
|---|
Score = 48.2 bits (114), Expect = 1e-05
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 538 YPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN 593
+P ++ G DIL F W A ++ G+E V F H +L G KM K+LGN
Sbjct: 320 WPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMV-FGHGFL-----TKDGMKMGKSLGN 373
Query: 594 VIDPIDTIKEFGADALRF 611
++P + +++FG DA+R+
Sbjct: 374 TLEPFELVQKFGPDAVRY 391
|
Length = 616 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 584 GRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQD 621
G+KMSK+ GNVI I+E+GAD +R + +A
Sbjct: 575 GKKMSKSKGNVIPLRKAIEEYGADVVRLYL-TSSAELL 611
|
Length = 897 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 51/236 (21%), Positives = 86/236 (36%), Gaps = 56/236 (23%)
Query: 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL 450
+P L PRS+ G E ++ +F+ + AE+ +E P +WL
Sbjct: 165 DPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESS--GDWPPNVLNFTLNWL 222
Query: 451 -SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDV 509
+K I+R L WG +P G E + Y
Sbjct: 223 KEGLKPRAITRDLDWGIPVPW---PGFEGKVF----------------------Y----- 252
Query: 510 LDTWFSSALWPFSTLG-WPDVSAD--DFKKFYPTTMLET----GHDILFF----WVARMV 558
WF + + S W + + D +K+F+ ++ G D + F W A +
Sbjct: 253 --VWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPA--M 308
Query: 559 MMGIEFTGSVP---FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRF 611
++G +P S YL + +G K SK+ G I D ++ + D LR+
Sbjct: 309 LLGSGEPLKLPDEIVSSEYL--TL---EGGKFSKSRGWGIWVDDALERYPPDYLRY 359
|
Length = 556 |
| >gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 564 FTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDL 622
TG PF+ ++H G + G KMSK+LGN I D +K++ + LR + L
Sbjct: 246 ATGVKPFAKYWMHNGFLN-IDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPL 304
Query: 623 SLSIERLTANKAFTNKLWNAGKFILQ 648
S E L K +L+NA + +
Sbjct: 305 DFSEELLEEAKKALERLYNALRRLRD 330
|
Length = 464 |
| >gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-05
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 624 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWE 660
+R+ + F NKLWNA +F+L NL ++
Sbjct: 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDP 37
|
This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. Length = 135 |
| >gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 586 KMSKTLGNVIDPIDTIKEFGADALR 610
KMSK+ GNV++P D + E+GAD+LR
Sbjct: 723 KMSKSRGNVVNPDDVVSEYGADSLR 747
|
Length = 963 |
| >gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 8e-04
Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 30/131 (22%)
Query: 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAA--EGI 156
P G +H+GH + DI VRY RM+G L++ D G ML A EGI
Sbjct: 11 PYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPI------MLKAEKEGI 64
Query: 157 KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDE---QLSRAVVEA 212
EL +Y G S D + T E +L++ E
Sbjct: 65 TPEELI------------ARYHAEHKRDFAGFGISFDNYGS---THSEENRELAQ---EI 106
Query: 213 FIRLHEKGLIY 223
+++L E G IY
Sbjct: 107 YLKLKENGYIY 117
|
Length = 673 |
| >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 569 PFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRF 611
PF+ +LH G + G KMSK+LGN I D +K++ + LR
Sbjct: 157 PFARYWLHTGHLT-IDGEKMSKSLGNFITVRDALKKYDPEVLRL 199
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 674 | |||
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 100.0 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 100.0 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 100.0 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0432 | 995 | consensus Valyl-tRNA synthetase [Translation, ribo | 100.0 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 100.0 | |
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 100.0 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 100.0 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 100.0 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 100.0 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 100.0 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 100.0 | |
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 100.0 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 100.0 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 100.0 | |
| KOG0434 | 1070 | consensus Isoleucyl-tRNA synthetase [Translation, | 100.0 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 100.0 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 100.0 | |
| KOG0433 | 937 | consensus Isoleucyl-tRNA synthetase [Translation, | 100.0 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 100.0 | |
| KOG0435 | 876 | consensus Leucyl-tRNA synthetase [Translation, rib | 100.0 | |
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 100.0 | |
| KOG0437 | 1080 | consensus Leucyl-tRNA synthetase [Translation, rib | 100.0 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 100.0 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 100.0 | |
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 100.0 | |
| PLN02224 | 616 | methionine-tRNA ligase | 100.0 | |
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 100.0 | |
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 100.0 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 100.0 | |
| KOG0436 | 578 | consensus Methionyl-tRNA synthetase [Translation, | 100.0 | |
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 100.0 | |
| KOG1247 | 567 | consensus Methionyl-tRNA synthetase [Translation, | 100.0 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 100.0 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 100.0 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02946 | 557 | cysteine-tRNA ligase | 100.0 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 100.0 | |
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 100.0 | |
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 100.0 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 99.97 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 99.96 | |
| KOG2007 | 586 | consensus Cysteinyl-tRNA synthetase [Translation, | 99.95 | |
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 99.95 | |
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 99.93 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 99.86 | |
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 99.86 | |
| PF13603 | 185 | tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P | 99.86 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 99.85 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 99.79 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 99.77 | |
| PLN02286 | 576 | arginine-tRNA ligase | 99.76 | |
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 99.7 | |
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 99.48 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 99.27 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 99.27 | |
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 99.23 | |
| TIGR00464 | 470 | gltX_bact glutamyl-tRNA synthetase, bacterial fami | 99.12 | |
| PRK01406 | 476 | gltX glutamyl-tRNA synthetase; Reviewed | 99.07 | |
| PRK12558 | 445 | glutamyl-tRNA synthetase; Provisional | 98.92 | |
| TIGR00463 | 560 | gltX_arch glutamyl-tRNA synthetase, archaeal and e | 98.9 | |
| PLN03233 | 523 | putative glutamate-tRNA ligase; Provisional | 98.87 | |
| PRK12410 | 433 | glutamylglutaminyl-tRNA synthetase; Provisional | 98.83 | |
| PLN02907 | 722 | glutamate-tRNA ligase | 98.79 | |
| PRK05347 | 554 | glutaminyl-tRNA synthetase; Provisional | 98.77 | |
| cd00418 | 230 | GlxRS_core catalytic core domain of glutamyl-tRNA | 98.77 | |
| PRK14895 | 513 | gltX glutamyl-tRNA synthetase; Provisional | 98.76 | |
| PLN02627 | 535 | glutamyl-tRNA synthetase | 98.64 | |
| PRK14703 | 771 | glutaminyl-tRNA synthetase/YqeY domain fusion prot | 98.59 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 98.53 | |
| KOG1195 | 567 | consensus Arginyl-tRNA synthetase [Translation, ri | 98.17 | |
| cd00807 | 238 | GlnRS_core catalytic core domain of glutaminyl-tRN | 98.15 | |
| TIGR03838 | 272 | queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe | 98.14 | |
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 98.14 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr | 98.1 | |
| PF00749 | 314 | tRNA-synt_1c: tRNA synthetases class I (E and Q), | 98.07 | |
| PTZ00437 | 574 | glutaminyl-tRNA synthetase; Provisional | 98.07 | |
| TIGR00440 | 522 | glnS glutaminyl-tRNA synthetase. This protein is a | 98.03 | |
| KOG4426 | 656 | consensus Arginyl-tRNA synthetase [Translation, ri | 97.99 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 97.94 | |
| PLN02859 | 788 | glutamine-tRNA ligase | 97.85 | |
| KOG1147 | 712 | consensus Glutamyl-tRNA synthetase [Translation, r | 97.61 | |
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 97.55 | |
| KOG1148 | 764 | consensus Glutaminyl-tRNA synthetase [Translation, | 96.69 | |
| KOG1149 | 524 | consensus Glutamyl-tRNA synthetase (mitochondrial) | 96.6 | |
| PRK13354 | 410 | tyrosyl-tRNA synthetase; Provisional | 95.37 | |
| cd00395 | 273 | Tyr_Trp_RS_core catalytic core domain of tyrosinyl | 95.27 | |
| PRK05912 | 408 | tyrosyl-tRNA synthetase; Validated | 94.97 | |
| cd00805 | 269 | TyrRS_core catalytic core domain of tyrosinyl-tRNA | 94.64 | |
| PF00579 | 292 | tRNA-synt_1b: tRNA synthetases class I (W and Y); | 94.63 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 94.4 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 94.0 | |
| PRK12556 | 332 | tryptophanyl-tRNA synthetase; Provisional | 93.75 | |
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 93.64 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 93.47 | |
| PRK08560 | 329 | tyrosyl-tRNA synthetase; Validated | 93.25 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 92.69 | |
| PRK12284 | 431 | tryptophanyl-tRNA synthetase; Reviewed | 92.65 | |
| PRK12282 | 333 | tryptophanyl-tRNA synthetase II; Reviewed | 91.94 | |
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 91.14 | |
| TIGR00233 | 328 | trpS tryptophanyl-tRNA synthetase. This model repr | 91.12 | |
| PTZ00126 | 383 | tyrosyl-tRNA synthetase; Provisional | 90.82 | |
| cd00806 | 280 | TrpRS_core catalytic core domain of tryptophanyl-t | 90.44 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ri | 90.32 | |
| TIGR00234 | 377 | tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy | 89.75 | |
| KOG0435 | 876 | consensus Leucyl-tRNA synthetase [Translation, rib | 89.61 | |
| COG0162 | 401 | TyrS Tyrosyl-tRNA synthetase [Translation, ribosom | 88.17 | |
| PRK00927 | 333 | tryptophanyl-tRNA synthetase; Reviewed | 87.8 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 87.66 | |
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 86.18 | |
| PLN02486 | 383 | aminoacyl-tRNA ligase | 85.06 | |
| PRK12283 | 398 | tryptophanyl-tRNA synthetase; Reviewed | 84.99 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 83.69 | |
| cd00395 | 273 | Tyr_Trp_RS_core catalytic core domain of tyrosinyl | 83.16 | |
| PLN02486 | 383 | aminoacyl-tRNA ligase | 82.21 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 81.43 |
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-159 Score=1352.09 Aligned_cols=607 Identities=57% Similarity=1.026 Sum_probs=573.8
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~ 138 (674)
++.||+ ++|++||++|++++.|++..+...++|+|..||||+||.||||||++.++.|+++||+||+||+|+|++||||
T Consensus 2 ~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~Dh 81 (877)
T COG0525 2 PKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDH 81 (877)
T ss_pred CCCCChhhhhHHHHHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCC
Confidence 578998 8999999999999999998765425599999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHH
Q 005849 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (674)
Q Consensus 139 ~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 218 (674)
+|++||.+||+.++++|+++.+++||+|+++||+|++++.+.|++||++||+++||+++++||||++.++|+++|.+|++
T Consensus 82 AGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~ 161 (877)
T COG0525 82 AGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYE 161 (877)
T ss_pred CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCc
Q 005849 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298 (674)
Q Consensus 219 kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~ 298 (674)
+|+||+++++|||||+|+|+|||.||+|++..|.++||+|++.+.+.+|+|||||||||+|+|||+|||+|+||++|+|+
T Consensus 162 ~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk 241 (877)
T COG0525 162 KGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGK 241 (877)
T ss_pred CCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCC
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCccccccc-ccCCCCHHHHHHHH
Q 005849 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRFEARKKL 377 (674)
Q Consensus 299 ~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g-~~~g~~~~~ar~~i 377 (674)
++.+|+. +++|||+.|+|||++||||+|++||+||++||+++++|+||+++++|++|+++++++ +|+|+++++||++|
T Consensus 242 ~v~lPl~-~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kI 320 (877)
T COG0525 242 EVILPLV-GREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKI 320 (877)
T ss_pred EEecCCC-CCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHH
Confidence 9999995 799999999999999999999999999999999999999999999999999998885 99999999999999
Q ss_pred HHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCce
Q 005849 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457 (674)
Q Consensus 378 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ 457 (674)
+++|++.|++.+.+++.|++|+|+|||++||+++++|||+++..+++.+++++++|+++|+|+.+++++.+|+++++|||
T Consensus 321 v~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWc 400 (877)
T COG0525 321 VEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWC 400 (877)
T ss_pred HHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCcccceeeecCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhc
Q 005849 458 ISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 537 (674)
Q Consensus 458 iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~ 537 (674)
||||++||||||+|||.+ ++..+++.+..+...+ ... +....+++++|||||||+|++||++++|||.++ .+|+++
T Consensus 401 ISRQlwwGh~IPvWy~~~-~g~v~v~~~~~~~~~~-~~~-~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t-~~l~~f 476 (877)
T COG0525 401 ISRQLWWGHRIPVWYCKE-CGNVVVAEEEPEDPAA-AEK-CPKEELEQDEDVLDTWFSSSLWPFSTLGWPEET-PDLKKF 476 (877)
T ss_pred eeeeeecCcccceEEecC-CCcEEeCCccccchhh-hcc-CchhcccCCcchhhhhhhcccccccccCCCCcc-hHHHhc
Confidence 999999999999999963 5667777664443322 111 222568899999999999999999999999986 899998
Q ss_pred CCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCC
Q 005849 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 617 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~ 617 (674)
||.|++++|+||||||+++|+++++.+.++.||+.|++||+++|.+|+|||||+||||+|.|++++||+|+|||+|++.+
T Consensus 477 yPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~ 556 (877)
T COG0525 477 YPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLA 556 (877)
T ss_pred CCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh-hHHHHHHHhHHHHHh
Q 005849 618 A-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDI-SRWEILLAYKVCVLT 671 (674)
Q Consensus 618 ~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~-~~~~~L~~~~~~~~~ 671 (674)
. ++|++|+++.++.+++|+|||||+.||++.|+++.... .+...+...|+|||+
T Consensus 557 ~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls 612 (877)
T COG0525 557 SPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILS 612 (877)
T ss_pred CCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcccccccccchHHHHHHH
Confidence 5 99999999999999999999999999999998766641 111444689999997
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-147 Score=1313.37 Aligned_cols=649 Identities=86% Similarity=1.387 Sum_probs=601.3
Q ss_pred ccccccchhhhhhhhhcccCCCCcccccchhhhhhhhccCCCCCC---CCCCChHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 005849 15 LSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTL---PKTFDFTSEERIYNWWESQGYFKPNFERGSDP 91 (674)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~ 91 (674)
++-+|++++..++-...+ |.|.++....|++.+..+.+++. ++.||+..|++||++|+++++|++..+.++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~E~~~~~~W~~~~~f~~~~~~~~~~ 89 (958)
T PLN02943 14 SSIRRLNPLLLSACRRRA----WAPRRAARRFCAAAASENDVFTSPETAKSFDFTSEERIYNWWESQGYFKPNFDRGGDP 89 (958)
T ss_pred hhhcccchhhhhchHHHh----hCCCcccccccchhcCccchhcccccCCCCChhhhHHHHHHHHHCCCcccCcccCCCC
Confidence 344677777777666666 77777787788888788888873 78999933999999999999999987656778
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~ 171 (674)
|+|++||||+||.|||||+++++++|+++||+||+||+|+|++||||||+|+|.+||+.++.+|+++.++++++|++.||
T Consensus 90 f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~ 169 (958)
T PLN02943 90 FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVW 169 (958)
T ss_pred EEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCC
Q 005849 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG 251 (674)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~ 251 (674)
+|++++.+.|++|+++||+++||+++|+|+||+|.++++++|.+|+++|+||++.++|+|||.|+|+|||+||+|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~ 249 (958)
T PLN02943 170 EWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG 249 (958)
T ss_pred HHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEeecCCC-ceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeC
Q 005849 252 TLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (674)
Q Consensus 252 ~~~~~kf~~~~~~-~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~ 330 (674)
.++|++|++.+.+ .+++|||||||||+||+||+|||+++||++|+|+.+.+|++.++++||++++||++++|||+||+|
T Consensus 250 ~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~ 329 (958)
T PLN02943 250 TLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKIS 329 (958)
T ss_pred cEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeC
Confidence 9999999997643 799999999999999999999999999999999999999965899999999999999999999999
Q ss_pred CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce
Q 005849 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (674)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~ 410 (674)
|+||++||+++++||||+++++|++|++++.+|.| ++|||++|+++|+++|++++.++++|.+|+|||||++|+++
T Consensus 330 Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~----~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~ 405 (958)
T PLN02943 330 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLY----WFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 405 (958)
T ss_pred CCCChHHHHHHHHcCCCceeeeCCCceeeccCCcc----HHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEE
Confidence 99999999999999999999999999999876655 99999999999999999999999999999999999999999
Q ss_pred eeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCC-cc-cEEEeCChhH
Q 005849 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK-EE-EYIVARNADE 488 (674)
Q Consensus 411 ~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~-~~-~~~~~~~~~~ 488 (674)
+++|||++++++++++++++++++++|+|+.+++++.+||++++||||||||+||+|||+|+|++. ++ .++++.+.++
T Consensus 406 ~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~ 485 (958)
T PLN02943 406 VSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEE 485 (958)
T ss_pred eccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHH
Confidence 999999999999999999999889999999999999999999999999999999999999998532 22 3788888888
Q ss_pred HHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCC
Q 005849 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV 568 (674)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~ 568 (674)
+...+...+|.+..+.+++|||||||||++||++++|||...+++|++|||+|++++|+||++||+++|+++++.+.+++
T Consensus 486 ~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~ 565 (958)
T PLN02943 486 ALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTV 565 (958)
T ss_pred HHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCC
Confidence 87776666766667899999999999999999999999986557899999999999999999999999999999999999
Q ss_pred CcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHh
Q 005849 569 PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQ 648 (674)
Q Consensus 569 Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~ 648 (674)
||+++++||+++|.+|+|||||+||+|+|.|++++||+|++|||+++.++++|++|+++.+.++++++++|||+.+|+++
T Consensus 566 Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~ 645 (958)
T PLN02943 566 PFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQ 645 (958)
T ss_pred ChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999877999999999999999999999999999998
Q ss_pred cCCC--------------CCChhHHHHHHHhHHHHHh
Q 005849 649 NLPS--------------QNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 649 ~~~~--------------~~~~~~~~~L~~~~~~~~~ 671 (674)
++.+ ++...+...+...|+|||+
T Consensus 646 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wils 682 (958)
T PLN02943 646 NLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVS 682 (958)
T ss_pred ccccccccccccccccccCCccccccccCHHHHHHHH
Confidence 8743 2221122356788999985
|
|
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-143 Score=1283.71 Aligned_cols=611 Identities=48% Similarity=0.924 Sum_probs=566.4
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
.++.||+ .+|++||++|+++++|++..+.++++|+|++||||+||.|||||+++++++|+++||+||+||+|+|++|||
T Consensus 96 ~~~~yd~~~iE~~w~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D 175 (1066)
T PLN02381 96 MAKQYSPSAVEKSWYAWWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVD 175 (1066)
T ss_pred cccCCCHHHHHHHHHHHHHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCC
Confidence 4788999 899999999999999998766667889999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHH-HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHH
Q 005849 138 HAGIATQLVVEKML-AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~-~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (674)
|||+|+|.++++.+ .+.|+++.++++++|++.||+|++++.+.|++++++||+++||+++|+|+|++|.++|+++|.+|
T Consensus 176 ~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L 255 (1066)
T PLN02381 176 HAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRL 255 (1066)
T ss_pred CCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHH
Confidence 99999999999877 44688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceEEcccceeccCCCCcccccchhhccCCC----------------CeeEEEEEeecCCCceEEEeecCCCcccCC
Q 005849 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGRSDFLTIATTRPETLFGD 280 (674)
Q Consensus 217 ~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~ 280 (674)
+++|+||++.++|+|||.|+|+|||+||+|.+.. +..++|+|++.+.+.+++|||||||||+|+
T Consensus 256 ~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~ 335 (1066)
T PLN02381 256 YKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGD 335 (1066)
T ss_pred HHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcc
Confidence 9999999999999999999999999999998866 556788999876556899999999999999
Q ss_pred ceEEeCCCCchhhhccCcEEecCCCCCceeeeeecc-cccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCccc
Q 005849 281 VALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLN 359 (674)
Q Consensus 281 ~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~-~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~ 359 (674)
+||+|||+|++|++|+|+++.+|++ ++.+|||.+. ||++++|||+||+|||||++||+++++|+||+++++|++|+++
T Consensus 336 ~avaV~P~d~ry~~L~G~~~~~Pl~-~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~ 414 (1066)
T PLN02381 336 TAIAIHPDDERYKHLHGKFAVHPFN-GRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKIN 414 (1066)
T ss_pred cceeeCCCCcchhhhCCCEEECCCC-CCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeC
Confidence 9999999999999999999999995 7899999875 9999999999999999999999999999999999999999999
Q ss_pred cccc-ccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHH---HhCCc
Q 005849 360 EVAG-LFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAV---EKGEL 435 (674)
Q Consensus 360 e~~g-~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i---~~~~~ 435 (674)
+++| .|+|+.+++||++|+++|++.|++++.+++.|++|+||||+++|++++++||||+++++++++++++ .++++
T Consensus 415 ~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i 494 (1066)
T PLN02381 415 SNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKL 494 (1066)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCce
Confidence 9876 8999999999999999999999999999999999999999999999999999999999999999999 67899
Q ss_pred eEechhHHHHHHHHHhcCCCceeecccCCCcccceeeec--C-------C-cccEEEeCChhHHHHHHhhhc-CCCcceE
Q 005849 436 TIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV--G-------K-EEEYIVARNADEALEKAHQKY-GKNVEIY 504 (674)
Q Consensus 436 ~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~--~-------~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 504 (674)
+|+|+.+++++.+||++++||||||||+||+|||+|+|. + . .+.+++..+..++...+...| +....++
T Consensus 495 ~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1066)
T PLN02381 495 EFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELS 574 (1066)
T ss_pred EEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCcccee
Confidence 999999999999999999999999999999999999984 1 0 134666777666655443333 3334699
Q ss_pred ecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCC
Q 005849 505 QDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG 584 (674)
Q Consensus 505 ~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G 584 (674)
|++||||||||||+||+++++||.+. ++|++|||+|++++|+||+|||+++|+++++.+.++.||++|++||+|+|.+|
T Consensus 575 rd~DVlDtWF~Sg~~p~~~lg~P~~~-~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G 653 (1066)
T PLN02381 575 QDPDVLDTWFSSGLFPLSVLGWPDDT-DDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG 653 (1066)
T ss_pred ecCceeeEEEeCCchHHHHhcCCCCH-HHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCC
Confidence 99999999999999999999999875 78999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccChhhHHh-------------------------------------hhChhHHHHHHhcCCC-CCccccCH
Q 005849 585 RKMSKTLGNVIDPIDTIK-------------------------------------EFGADALRFTISLGTA-GQDLSLSI 626 (674)
Q Consensus 585 ~KMSKS~gN~i~~~dll~-------------------------------------~ygaD~lR~~l~~~~~-~~d~~fs~ 626 (674)
+|||||+||+|+|.++++ +||+|+|||||++..+ ++|++|+.
T Consensus 654 ~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~ 733 (1066)
T PLN02381 654 RKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDI 733 (1066)
T ss_pred CCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccH
Confidence 999999999999999999 7999999999998887 88999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-CCCh--hHHHHHHHhHHHHHh
Q 005849 627 ERLTANKAFTNKLWNAGKFILQNLPS-QNDI--SRWEILLAYKVCVLT 671 (674)
Q Consensus 627 ~~l~~~~~~~~kl~n~~~f~~~~~~~-~~~~--~~~~~L~~~~~~~~~ 671 (674)
+.+...++|++||||+++|+++++.+ +++. .+...+...|+|||+
T Consensus 734 ~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~~~~~~~~~~DrWILs 781 (1066)
T PLN02381 734 LRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPATLSVETMPFSCKWILS 781 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCccccCHHHHHHHH
Confidence 99999999999999999999988863 4321 223456778999986
|
|
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-143 Score=1276.62 Aligned_cols=600 Identities=60% Similarity=1.074 Sum_probs=564.0
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
.++.||+ .+|++||++|+++++|++..+ .+++|+|++||||+||.|||||+++++++|+++||+||+||+|+|++|||
T Consensus 5 ~~~~y~~~~~E~~~~~~W~~~~~f~~~~~-~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D 83 (874)
T PRK05729 5 LPKTYDPKEVEAKWYQKWEEKGYFKPDDN-SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTD 83 (874)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCcC-CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC
Confidence 4789999 899999999999999998765 35569999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHH
Q 005849 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (674)
|||+|+|.+|++.+.++|+++.++++++|++.||+|++++.+.|++|+++||+++||+|+|+|+|++|.++|+++|.+|+
T Consensus 84 ~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 163 (874)
T PRK05729 84 HAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLY 163 (874)
T ss_pred ccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccC
Q 005849 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297 (674)
Q Consensus 218 ~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G 297 (674)
++|+||++.++|+|||.|+|+|||+||+|++..+.++|++|++.+.+.+|+|||||||||+||+||+|||+++||++|+|
T Consensus 164 ~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g 243 (874)
T PRK05729 164 EKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIG 243 (874)
T ss_pred HCCCEeecCcccccCCCCCCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred cEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHH
Q 005849 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKL 377 (674)
Q Consensus 298 ~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i 377 (674)
+++.+|++ ++++|||+++||++++|||+||+||+||++||+++++++||+++++|++|++++++|.|+|+++++||++|
T Consensus 244 ~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i 322 (874)
T PRK05729 244 KTVILPLV-GREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAI 322 (874)
T ss_pred CEEECCCC-CCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHH
Confidence 99999995 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCce
Q 005849 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457 (674)
Q Consensus 378 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ 457 (674)
+++|+++|++.+.+++.|++|+|||||++|++++++||||+++++++++++++++++++|+|+..++++.+||++++|||
T Consensus 323 ~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWc 402 (874)
T PRK05729 323 VADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWC 402 (874)
T ss_pred HHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccce
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred eecccCCCcccceeeecCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhc
Q 005849 458 ISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 537 (674)
Q Consensus 458 iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~ 537 (674)
||||++||+|||+|++++ +.+.+..+..+. + ....+++++|||||||||++||+++++||.+. .+|++|
T Consensus 403 ISRq~~WG~pIP~~~~~~--~~~~v~~~~~~~-------~-~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~-~~~~~~ 471 (874)
T PRK05729 403 ISRQLWWGHRIPAWYDED--GEVYVGREEPEA-------R-EKALLTQDEDVLDTWFSSALWPFSTLGWPEKT-EDLKRF 471 (874)
T ss_pred eeeecccCCcccEEEeCC--CcEEeCCccccc-------c-cccCeEeCCceecceecCCccHHHHhCCCCCc-HHHHhc
Confidence 999999999999999965 234444332111 0 11358899999999999999999999999764 789999
Q ss_pred CCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCC
Q 005849 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 617 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~ 617 (674)
||+|++++|+||++||+++|+++++.+.++.||+++++||+++|.+|+|||||+||+|+|.|++++||+|++||||++.+
T Consensus 472 ~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~ 551 (874)
T PRK05729 472 YPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALA 551 (874)
T ss_pred CCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred C-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh--hHHHHHHHhHHHHHh
Q 005849 618 A-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDI--SRWEILLAYKVCVLT 671 (674)
Q Consensus 618 ~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~--~~~~~L~~~~~~~~~ 671 (674)
. ++|++|+++.+...++++++|||+.||++.++.++... .+...+...|+|||+
T Consensus 552 ~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~ 608 (874)
T PRK05729 552 SPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSLADRWILS 608 (874)
T ss_pred CCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccccCCHHHHHHHH
Confidence 5 99999999999999999999999999998886554321 123356778999986
|
|
| >KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-144 Score=1191.50 Aligned_cols=611 Identities=55% Similarity=1.008 Sum_probs=578.3
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCC-CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFE-RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~-~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
.++.|++ .+|+.|+.||++++.|++... ..+..|+++.||||+||.||||||++.++.|+++||+||+||+|+|++|+
T Consensus 42 ~~~~y~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~ 121 (995)
T KOG0432|consen 42 LPAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGT 121 (995)
T ss_pred ccccCCccchHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCc
Confidence 3678998 899999999999999998765 34678999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcC-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHH
Q 005849 137 DHAGIATQLVVEKMLAAEG-IKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (674)
Q Consensus 137 D~~Gl~~e~~ve~~~~~~g-~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~ 215 (674)
||+|++||..|||.+..++ +++.+++|++|++++|+|.+++...|.+||++||.++||+|+++|||+...+.|.++|.+
T Consensus 122 DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvr 201 (995)
T KOG0432|consen 122 DHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVR 201 (995)
T ss_pred cccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHH
Confidence 9999999999999998776 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCceEEcccceeccCCCCcccccchhhccCCC----------------CeeEEEEEeecCCCceEEEeecCCCcccC
Q 005849 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGRSDFLTIATTRPETLFG 279 (674)
Q Consensus 216 L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~kf~~~~~~~~l~v~Tt~Petl~~ 279 (674)
|++.|+||++.+.|||||.++|++||.||++.+.. |.++.|+|++.+++..|+|+|||||||+|
T Consensus 202 L~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lG 281 (995)
T KOG0432|consen 202 LHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILG 281 (995)
T ss_pred HHhcCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCcccccc
Confidence 99999999999999999999999999999988743 77999999999998999999999999999
Q ss_pred CceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCccc
Q 005849 280 DVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLN 359 (674)
Q Consensus 280 ~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~ 359 (674)
++||||||+|+||+++.|+.+.|||+ ++.+|||.|.+||++||||+|+++|+|+++||++++++||+.+++++++|.++
T Consensus 282 DvAvAVhP~D~RYk~lhGk~~~hP~~-~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~ 360 (995)
T KOG0432|consen 282 DVAVAVHPDDDRYKHLHGKFVKHPFT-GRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLN 360 (995)
T ss_pred ceeEEeCCCCcccccccCceeecCCC-CCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCcee
Confidence 99999999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEec
Q 005849 360 EVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMP 439 (674)
Q Consensus 360 e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P 439 (674)
+.||+|+||++++||++|++.|++.|++...+++.+.+|.|.|||++||+++.+|||++++++.+++++++++|++++.|
T Consensus 361 ~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P 440 (995)
T KOG0432|consen 361 NVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILP 440 (995)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCceeecccCCCcccceeeecC-----CcccEEEeCChhHHHHHHhhhcC--CCcceEecCCeeee
Q 005849 440 ERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG-----KEEEYIVARNADEALEKAHQKYG--KNVEIYQDPDVLDT 512 (674)
Q Consensus 440 ~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dvld~ 512 (674)
+..++.+.+|+++++|||||||.||||+||+|++.. ..+.|+++++++|+++++.+++| ++.++++++|||||
T Consensus 441 ~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDT 520 (995)
T KOG0432|consen 441 EFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDT 520 (995)
T ss_pred hHHHHHHHHHHhhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHh
Confidence 999999999999999999999999999999999842 24568999999999999999885 66789999999999
Q ss_pred eccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCC
Q 005849 513 WFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLG 592 (674)
Q Consensus 513 Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~g 592 (674)
||+|++|||+++|||+++ ++|+.+||.+++.+|+||++||+++|+|+++.++|+.||+.|++||+|+|..|+|||||+|
T Consensus 521 WFSS~L~PfS~lGWP~~t-~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLG 599 (995)
T KOG0432|consen 521 WFSSGLWPFSTLGWPEET-KDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLG 599 (995)
T ss_pred hhhcccccchhcCCcccc-ccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeechhhccccccccchhhc
Confidence 999999999999999987 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChhhHHh-------------------------------------hhChhHHHHHHhcCCC-CCccccCHHHHHHHHH
Q 005849 593 NVIDPIDTIK-------------------------------------EFGADALRFTISLGTA-GQDLSLSIERLTANKA 634 (674)
Q Consensus 593 N~i~~~dll~-------------------------------------~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~ 634 (674)
|||+|.|+|+ +.|.|+|||.|++... .+|+++|...+.+++.
T Consensus 600 NVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~ 679 (995)
T KOG0432|consen 600 NVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRH 679 (995)
T ss_pred cccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHH
Confidence 9999999998 3499999999999888 9999999999999999
Q ss_pred HHHHHHHHHHHHHhcCC-CCCC--hhHHHHHHH-hHHHHHh
Q 005849 635 FTNKLWNAGKFILQNLP-SQND--ISRWEILLA-YKVCVLT 671 (674)
Q Consensus 635 ~~~kl~n~~~f~~~~~~-~~~~--~~~~~~L~~-~~~~~~~ 671 (674)
|+|||||+.||+++.+. +|.+ ..+.+--.. .|+|||+
T Consensus 680 FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIls 720 (995)
T KOG0432|consen 680 FCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILS 720 (995)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHH
Confidence 99999999999998654 3442 112211121 8999986
|
|
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-143 Score=1286.87 Aligned_cols=612 Identities=51% Similarity=0.953 Sum_probs=569.7
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCC----CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNF----ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~----~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~ 133 (674)
.++.||+ .+|++||++|+++++|++.. +.++++|+|++|||||||.|||||+++++++|+++||+||+|++|+|+
T Consensus 24 ~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~ 103 (995)
T PTZ00419 24 MAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWV 103 (995)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 4688999 89999999999999999852 335678999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHH-HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHH
Q 005849 134 PGTDHAGIATQLVVEKML-AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEA 212 (674)
Q Consensus 134 ~G~D~~Gl~~e~~ve~~~-~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~ 212 (674)
+||||||+|+|.+||+.+ .+.|+++.++++++|+++||+|++++.+.|+++|++||+++||+++|+|+|++|.+.++++
T Consensus 104 ~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~ 183 (995)
T PTZ00419 104 PGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEA 183 (995)
T ss_pred CCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHH
Confidence 999999999999999987 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCceEEcccceeccCCCCcccccchhhccCCC----------------CeeEEEEEeecCCCc-eEEEeecCCC
Q 005849 213 FIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGRSD-FLTIATTRPE 275 (674)
Q Consensus 213 f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~kf~~~~~~~-~l~v~Tt~Pe 275 (674)
|.+|+++|+||++.++|+|||.|+|+|||+||+|.+.. +.++|++|++.+.+. +|+|||||||
T Consensus 184 F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPe 263 (995)
T PTZ00419 184 FVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIE 263 (995)
T ss_pred HHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcc
Confidence 99999999999999999999999999999999998876 677899999987655 9999999999
Q ss_pred cccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecc-cccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccC
Q 005849 276 TLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK 354 (674)
Q Consensus 276 tl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~-~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~ 354 (674)
||+||+||+|||++++|++|+|+++.+|+..++.+||++++ ||++++|||+||+|||||++||+++++||||+++++|+
T Consensus 264 Tl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~ 343 (995)
T PTZ00419 264 TMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTL 343 (995)
T ss_pred hhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCC
Confidence 99999999999999999999999999999437999999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCC
Q 005849 355 DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGE 434 (674)
Q Consensus 355 ~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~ 434 (674)
+|+|++++|.|.|+.+.|||++|+++|+++|++++.+++.|++|+|||||++|++++++||||+++++++++++++++++
T Consensus 344 ~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~ 423 (995)
T PTZ00419 344 DGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGE 423 (995)
T ss_pred CceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred ceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCC--------cccEEEeCChhHHHHHHhhhcC---CCcce
Q 005849 435 LTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--------EEEYIVARNADEALEKAHQKYG---KNVEI 503 (674)
Q Consensus 435 ~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 503 (674)
++|+|+++++++.+||++++||||||||+||+|||+|+|++. .+.+++..+.+++...+...++ ++..+
T Consensus 424 i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (995)
T PTZ00419 424 LKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFEL 503 (995)
T ss_pred eEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCe
Confidence 999999999999999999999999999999999999999652 1235667777776655433332 23569
Q ss_pred EecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCC
Q 005849 504 YQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ 583 (674)
Q Consensus 504 ~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~ 583 (674)
+|++|||||||||++||+++++||.+. .+|++|||+|++++|+||+|+|+++|+++++.+.++.||++|++||+++|.+
T Consensus 504 ~~~~DVlDtWFdS~l~p~~~~g~p~~~-~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~ 582 (995)
T PTZ00419 504 EQDEDVLDTWFSSGLFPFSTLGWPDQT-DDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQ 582 (995)
T ss_pred EECCceEEEEEeCCHHHHHHhCCCCCh-HHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhccceEECCC
Confidence 999999999999999999999999765 6799999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCccChhhHHh-------------------------------------hhChhHHHHHHhcCCC-CCccccC
Q 005849 584 GRKMSKTLGNVIDPIDTIK-------------------------------------EFGADALRFTISLGTA-GQDLSLS 625 (674)
Q Consensus 584 G~KMSKS~gN~i~~~dll~-------------------------------------~ygaD~lR~~l~~~~~-~~d~~fs 625 (674)
|+|||||+||+|+|.++++ +||+|++||||++... ++|++|+
T Consensus 583 G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~ 662 (995)
T PTZ00419 583 GEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLD 662 (995)
T ss_pred CCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCcccc
Confidence 9999999999999999999 8999999999998776 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCChh--------HHHHHHHhHHHHHh
Q 005849 626 IERLTANKAFTNKLWNAGKFILQNLPSQNDIS--------RWEILLAYKVCVLT 671 (674)
Q Consensus 626 ~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~~--------~~~~L~~~~~~~~~ 671 (674)
.+.+...+++++||||+++|+++++.++.... +...+...|+|||+
T Consensus 663 ~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls 716 (995)
T PTZ00419 663 INRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILH 716 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHH
Confidence 99999999999999999999999887643211 12456678999986
|
|
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-142 Score=1265.96 Aligned_cols=607 Identities=58% Similarity=1.032 Sum_probs=572.0
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~ 138 (674)
++.||+ ++|++||++|+++++|++..+.++++|+|++||||+||.|||||+++++++|+++||+||+|++|++++||||
T Consensus 2 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 81 (861)
T TIGR00422 2 PKDYDPHEVEKKWYKKWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDH 81 (861)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCc
Confidence 578999 8999999999999999998766678899999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHH
Q 005849 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (674)
Q Consensus 139 ~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 218 (674)
||+|||.+||+.+..+|+++.++++|+|+++|++|++++.+.+++++++||+++||+++|+|+|++|.++|+++|.+|++
T Consensus 82 ~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~ 161 (861)
T TIGR00422 82 AGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYE 161 (861)
T ss_pred CCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCC-ceEEEeecCCCcccCCceEEeCCCCchhhhccC
Q 005849 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297 (674)
Q Consensus 219 kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~-~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G 297 (674)
+|+||++.++|+|||.|+|+|||+||+|++..++++|++|++.+.+ .+|+|||||||||+||+||+|||++++|++|+|
T Consensus 162 ~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g 241 (861)
T TIGR00422 162 KGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIG 241 (861)
T ss_pred CCCeeecCcccccCCCCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcC
Confidence 9999999999999999999999999999999999999999998754 899999999999999999999999999999999
Q ss_pred cEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHH
Q 005849 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKL 377 (674)
Q Consensus 298 ~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i 377 (674)
+++.+|++ ++++||++++||++++|||+||+||+||++||+++++||||+++++|++|++++++|.|+|++++|||++|
T Consensus 242 ~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i 320 (861)
T TIGR00422 242 KKVILPLT-GRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKI 320 (861)
T ss_pred CEEEcCCC-CCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHH
Confidence 99999996 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCce
Q 005849 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457 (674)
Q Consensus 378 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ 457 (674)
+++|+++|++++.+++.|.+|+|+|||+++++++++||||+++++++++++++++++++|+|++.++++.+||++++|||
T Consensus 321 ~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ 400 (861)
T TIGR00422 321 VEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWC 400 (861)
T ss_pred HHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccce
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred eecccCCCcccceeeecCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhc
Q 005849 458 ISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 537 (674)
Q Consensus 458 iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~ 537 (674)
|||||+||+|||+|+|+. ++...++.+..++...+ .++....+.|++|||||||||++||+++++||.++ .+|++|
T Consensus 401 ISRq~~WG~piP~w~~~~-~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~-~~~~~~ 476 (861)
T TIGR00422 401 ISRQLIWGHRIPVWYCKE-CGEVYVAKEEPLPDDKT--NTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDET-KDLKKF 476 (861)
T ss_pred eeeecccCCcceEEEECC-CCcEEeccchHHhhhhh--ccCCcccEEECCCcccceeccchHHHHHhCCCCCh-HHHhhc
Confidence 999999999999999975 45566666666655433 24444579999999999999999999999999866 789999
Q ss_pred CCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCC
Q 005849 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 617 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~ 617 (674)
||+|++++|+||++||+++|+++++++.++.||+++++||+++|.+|+|||||+||+|+|.+++++||+|++||||++..
T Consensus 477 ~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~ 556 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLV 556 (861)
T ss_pred CCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-hhHHHHHHHhHHHHHh
Q 005849 618 A-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQND-ISRWEILLAYKVCVLT 671 (674)
Q Consensus 618 ~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~-~~~~~~L~~~~~~~~~ 671 (674)
+ ++|++|+++.+.+.++++++|||+.+|+..++.+++. ......+...|+|||+
T Consensus 557 ~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~D~wil~ 612 (861)
T TIGR00422 557 TPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELSGGEEKLSLADRWILS 612 (861)
T ss_pred CCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCHHHHHHHH
Confidence 8 9999999999999999999999999999887765421 1112345677999885
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-141 Score=1218.47 Aligned_cols=609 Identities=33% Similarity=0.545 Sum_probs=560.3
Q ss_pred CCCCCCCCCCh-HHHHHHHHHHHhCCCCCCCCC---CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCe
Q 005849 55 NKDTLPKTFDF-TSEERIYNWWESQGYFKPNFE---RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPT 130 (674)
Q Consensus 55 ~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~---~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V 130 (674)
|...-|..+|+ ++|++++++|+++++|++..+ ++++.|++++||||+||.+|||||+|.+++|++.||+.|+||+|
T Consensus 10 p~T~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v 89 (933)
T COG0060 10 PKTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDV 89 (933)
T ss_pred ccCCCCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcC
Confidence 33444788898 899999999999999998763 56789999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHH
Q 005849 131 LWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210 (674)
Q Consensus 131 ~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~ 210 (674)
.+++||||||||||.+|++.+...+...++++.++|.+.|++++.++.+.++++++|||++.||+++|.|||++|.+.++
T Consensus 90 ~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~ 169 (933)
T COG0060 90 PYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVW 169 (933)
T ss_pred CCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHH
Confidence 99999999999999999988865334557789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecC----CCceEEEeecCCCcccCCceEEeC
Q 005849 211 EAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG----RSDFLTIATTRPETLFGDVALAVN 286 (674)
Q Consensus 211 ~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~----~~~~l~v~Tt~Petl~~~~av~v~ 286 (674)
++|.+|+++|+||++.+||+|||+|+|+||++||+|.+..++++|++|++++ .+.+++||||||||||+|.||+||
T Consensus 170 ~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~ 249 (933)
T COG0060 170 WAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVH 249 (933)
T ss_pred HHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeC
Confidence 9999999999999999999999999999999999999999999999999974 589999999999999999999999
Q ss_pred CCCch----------------------------h--------hhccCcEEecCCCC---CceeeeeecccccccCCCcce
Q 005849 287 PQDEH----------------------------Y--------SQFIGMMAIVPMTY---GRHVPIISDKYVDKEFGTGVL 327 (674)
Q Consensus 287 p~~~~----------------------------y--------~~l~G~~~~~P~~~---~~~vpii~~~~V~~~~GTG~v 327 (674)
|+.++ | ++|.|.++.|||.+ .+.+||+.++||+.+.|||+|
T Consensus 250 pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~V 329 (933)
T COG0060 250 PDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLV 329 (933)
T ss_pred CCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccce
Confidence 99752 1 36889999999965 699999999999999999999
Q ss_pred eeCCCCChhhHHHHHHhC-CCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCc
Q 005849 328 KISPGHDHNDYLLARKLG-LPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 406 (674)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~-l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 406 (674)
|++||||++||.+|+++| ||+++++|++|+++++.+.|.|+.++||++.|++.|+++|.+++.+.+.|+|||||||++|
T Consensus 330 HtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktP 409 (933)
T COG0060 330 HTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTP 409 (933)
T ss_pred ecCCCCCHHHHHHHHHcCCcCCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCe
Confidence 999999999999999999 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCCh
Q 005849 407 IEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA 486 (674)
Q Consensus 407 i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~ 486 (674)
+++|+++|||++++++++++++.+. +++|+|+..+++|.+||++.+||||||||+||+|||+|+|++ ++..++. .
T Consensus 410 lIyRAt~QWFi~v~~~r~~~l~~i~--~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~-~g~~~~~--~ 484 (933)
T COG0060 410 LIYRATPQWFVSVDKLRDKMLKEIN--KVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKE-TGEILVI--T 484 (933)
T ss_pred eEEeecchheeEHHHHHHHHHHHHh--cceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECC-CCCeecc--H
Confidence 9999999999999999999998886 799999999999999999999999999999999999999976 3444443 3
Q ss_pred hHHHHHHhh--------------------hc-CCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEE
Q 005849 487 DEALEKAHQ--------------------KY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLET 545 (674)
Q Consensus 487 ~~~~~~~~~--------------------~~-~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~ 545 (674)
.|+.+.... .+ .++..++|++||||||||||+++++..+ |.++ ..|..++ +|++++
T Consensus 485 ~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~-~~~~-~~~~~~~-aD~~lE 561 (933)
T COG0060 485 EELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLH-PREN-LKFPALF-ADFYLE 561 (933)
T ss_pred HHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccC-Cccc-ccCcccc-CcEEEE
Confidence 333222111 01 2234899999999999999999999887 5543 3344444 599999
Q ss_pred eehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccC
Q 005849 546 GHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLS 625 (674)
Q Consensus 546 G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs 625 (674)
|+||+|+||+++++++.++.++.||+++++|||++|.+|+|||||+||+|+|.|++++||||+||||++++.+..|+.||
T Consensus 562 GsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s 641 (933)
T COG0060 562 GSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFS 641 (933)
T ss_pred eccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCchhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 626 IERLTANKAFTNKLWNAGKFILQNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 626 ~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
++.++..++.+++|||+++|+++||++|++. +..++|...|+|||+
T Consensus 642 ~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~ 690 (933)
T COG0060 642 DEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILS 690 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHH
Confidence 9999999999999999999999999999975 567799999999996
|
|
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-140 Score=1255.70 Aligned_cols=610 Identities=29% Similarity=0.513 Sum_probs=560.9
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
.++.||+ ++|++||++|+++++|++..+ .++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|
T Consensus 7 ~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~G 86 (975)
T PRK06039 7 VDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAG 86 (975)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCC
Confidence 3688999 899999999999999998654 4578899999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHH
Q 005849 136 TDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFI 214 (674)
Q Consensus 136 ~D~~Gl~~e~~ve~~~~~~g~-~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 214 (674)
|||||+|||.+|++.+...+. ..+++++++|+++|++|+.++.+.+++++++||+++||+++|+|+||.|.++++|+|.
T Consensus 87 wD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~ 166 (975)
T PRK06039 87 WDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALK 166 (975)
T ss_pred cCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHH
Confidence 999999999999987633322 3457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCceEEcccceeccCCCCcccccchhh--ccCCCCeeEEEEEeecC-CCceEEEeecCCCcccCCceEEeCCCC--
Q 005849 215 RLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE--YSEEPGTLYYIKYRVAG-RSDFLTIATTRPETLFGDVALAVNPQD-- 289 (674)
Q Consensus 215 ~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~--~~~~~~~~~~~kf~~~~-~~~~l~v~Tt~Petl~~~~av~v~p~~-- 289 (674)
+|+++|+||++.++|+|||.|+|+|||+||+ |++..++++||+|++.+ .+.+++|||||||||+||+||+|||++
T Consensus 167 ~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y 246 (975)
T PRK06039 167 QLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDY 246 (975)
T ss_pred HHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCce
Confidence 9999999999999999999999999999999 99999999999999974 678999999999999999999999998
Q ss_pred -------chh-----------------------hhccCcEEecCCCC--C--ceeeeeecccccccCCCcceeeCCCCCh
Q 005849 290 -------EHY-----------------------SQFIGMMAIVPMTY--G--RHVPIISDKYVDKEFGTGVLKISPGHDH 335 (674)
Q Consensus 290 -------~~y-----------------------~~l~G~~~~~P~~~--~--~~vpii~~~~V~~~~GTG~v~~~P~h~~ 335 (674)
++| ++|+|+++.+|++. + +.+||++++||++++|||+||+|||||+
T Consensus 247 ~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~ 326 (975)
T PRK06039 247 VKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGE 326 (975)
T ss_pred EEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCCh
Confidence 465 67999999999963 3 5799999999999999999999999999
Q ss_pred hhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccc
Q 005849 336 NDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQW 415 (674)
Q Consensus 336 ~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qw 415 (674)
+||++++++|||+++++|++|+|++++|.|+|+.++|||++|+++|+++|++++.+++.|++|+|||||+++++++++||
T Consensus 327 ~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qW 406 (975)
T PRK06039 327 DDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESW 406 (975)
T ss_pred HHHHHHHHcCCCccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhCCceEechhHHH-HHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHHHHHh
Q 005849 416 FVTMEPLAEKALHAVEKGELTIMPERFEK-IYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAH 494 (674)
Q Consensus 416 fi~~~~~~~~~~~~i~~~~~~~~P~~~~~-~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (674)
||++++++++++++++ +++|+|+..++ ++.+||++++||||||||+||+|||+|+|++ ++.+++..++.++.....
T Consensus 407 Fi~~~~~k~~ll~~~~--~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~-~g~~~v~~~~~el~~~~g 483 (975)
T PRK06039 407 FIRVTKIKDRMLELNQ--KINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCED-CGRIDVIGSIEELEELFG 483 (975)
T ss_pred eEecHHHHHHHHHhhC--CeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecC-CCeEEEeccHHHHHHHhC
Confidence 9999999999999885 59999999998 9999999999999999999999999999976 456888888887754432
Q ss_pred h-----------------hcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHH
Q 005849 495 Q-----------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARM 557 (674)
Q Consensus 495 ~-----------------~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~ 557 (674)
. +|+++..+.|++|||||||||++||+++++||.++++.|+++||+|++++|+||++||+++|
T Consensus 484 ~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l 563 (975)
T PRK06039 484 EDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTL 563 (975)
T ss_pred CCcchhhhcccccccccccCCCCcceEeccccccceeecCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHH
Confidence 1 12224568999999999999999999999999877678999999999999999999999999
Q ss_pred HHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHH-HHHHHHH
Q 005849 558 VMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIER-LTANKAF 635 (674)
Q Consensus 558 ~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~-l~~~~~~ 635 (674)
++++.++.++.||+++++||++++.+|+|||||+||+|+|.+++++||+|++||||++.++ ++|++|+++. ++.++++
T Consensus 564 ~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~ 643 (975)
T PRK06039 564 LALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKF 643 (975)
T ss_pred HHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987 9999999999 6678999
Q ss_pred HHHHHHHHHHHH--hcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 636 TNKLWNAGKFIL--QNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 636 ~~kl~n~~~f~~--~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
+++|||+++|+. .++.+++.. .+...+...|+|+|+
T Consensus 644 l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils 684 (975)
T PRK06039 644 LLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILS 684 (975)
T ss_pred HHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHH
Confidence 999999999976 355554321 123456778999885
|
|
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-140 Score=1257.45 Aligned_cols=603 Identities=51% Similarity=0.949 Sum_probs=559.6
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCC-CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNF-ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~-~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
++.||+ .+|++||++|+++++|+... +.++++|+|++||||+||.|||||+++++++|+++||+||+||+|+|++|||
T Consensus 16 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D 95 (1052)
T PRK14900 16 AKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTD 95 (1052)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCC
Confidence 788999 89999999999999999863 3457789999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHH-HcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHH
Q 005849 138 HAGIATQLVVEKMLA-AEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~~-~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (674)
|||+|+|.++++.+. +.|+++.++++++|++.||+|++++.+.|+++|++||+++||+++|+|+||+|.++++++|.+|
T Consensus 96 ~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L 175 (1052)
T PRK14900 96 HAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRL 175 (1052)
T ss_pred ccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHH
Confidence 999999999998773 4688899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceEEcccceeccCCCCcccccchhhccC-CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhc
Q 005849 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF 295 (674)
Q Consensus 217 ~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l 295 (674)
+++|+||++.++|+|||.|+|+|||+||+|.+ ..+.++||+|++.+.+.+|+|||||||||+||+||+|||++++|++|
T Consensus 176 ~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L 255 (1052)
T PRK14900 176 HEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMAL 255 (1052)
T ss_pred HHCCCEEeccceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHh
Confidence 99999999999999999999999999999998 78889999999988778999999999999999999999999999999
Q ss_pred cCcEEecCCCCCceeeeeecc-cccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHH
Q 005849 296 IGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEAR 374 (674)
Q Consensus 296 ~G~~~~~P~~~~~~vpii~~~-~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar 374 (674)
+|+++.+|++ ++.+|||.+. +|++++|||+||+||+||++||+++++++||+++++|++|++++++|.|.|+.++|||
T Consensus 256 ~G~~~~~Pl~-~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear 334 (1052)
T PRK14900 256 HGKKVRHPIT-GRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEAR 334 (1052)
T ss_pred cCCEEECCCC-CCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHH
Confidence 9999999995 8999999764 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCC
Q 005849 375 KKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIK 454 (674)
Q Consensus 375 ~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~ 454 (674)
+.|+++|+++|++++.+++.|++|+||||+++|++++++||||+++++++++++++++++++|+|++.++++.+||++++
T Consensus 335 ~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~ 414 (1052)
T PRK14900 335 KEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIH 414 (1052)
T ss_pred HHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred CceeecccCCCcccceeeecCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhh
Q 005849 455 DWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDF 534 (674)
Q Consensus 455 DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f 534 (674)
||||||||+||+|||+|+|++ +.++++....+.. ..|+ +..+.+++|||||||||++||+++++||.+. .+|
T Consensus 415 DW~ISRqr~WG~PIP~w~~~~--~~~~v~~~~~~~~----~~~~-~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~-~~~ 486 (1052)
T PRK14900 415 DWCISRQLWWGHQIPAWYCPD--GHVTVARETPEAC----STCG-KAELRQDEDVLDTWFSSGLWPFSTMGWPEQT-DTL 486 (1052)
T ss_pred cceEEeecCCCceeCeEEcCC--CcEEecccccccc----cccC-ccceecCCceEEEEEcCChHHHHHHcCCCch-HHH
Confidence 999999999999999999964 3466655432111 1222 2358899999999999999999999999864 679
Q ss_pred hhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHh
Q 005849 535 KKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTIS 614 (674)
Q Consensus 535 ~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~ 614 (674)
++|||+|++++|+||++||+++|+++++.+.++.||++|++||+++|.+|+|||||+||+|+|.|++++||+|++||||+
T Consensus 487 ~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~ 566 (1052)
T PRK14900 487 RTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLA 566 (1052)
T ss_pred HhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 615 LGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 615 ~~~~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
+..+ ++|++|+++.+...++++++|||+.||++.++.++... ..-..+...|+|||+
T Consensus 567 ~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils 627 (1052)
T PRK14900 567 ALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADRWILA 627 (1052)
T ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccCHHHHHHHH
Confidence 8776 99999999999889999999999999998877665321 111235667889875
|
|
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-139 Score=1249.58 Aligned_cols=609 Identities=22% Similarity=0.395 Sum_probs=549.3
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
++.||+ ++|++|+++|+++++|++..+ .++++|+|++||||+||.|||||+++++++|+++||+||+||+|++++||
T Consensus 69 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~Gw 148 (1205)
T PTZ00427 69 SENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGW 148 (1205)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCcc
Confidence 778999 899999999999999999764 35677999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHH
Q 005849 137 DHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (674)
Q Consensus 137 D~~Gl~~e~~ve~~~~~~g~-~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~ 215 (674)
||||+|||.++|+.+...+. ...++++++|.+.|++|+.++.+.+++++++||+++||+++|+|+|+.|.+.++++|.+
T Consensus 149 D~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~ 228 (1205)
T PTZ00427 149 DCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSE 228 (1205)
T ss_pred CCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHH
Confidence 99999999999987733222 23368999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCceEEcccceeccCCCCcccccchh--hccCCCCeeEEEEEeecCC------------------------------
Q 005849 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGR------------------------------ 263 (674)
Q Consensus 216 L~~kGliy~~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~kf~~~~~------------------------------ 263 (674)
|+++|+||++.++|+|||.|+|+||++|| +|++..++++|++|++.+.
T Consensus 229 L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~ 308 (1205)
T PTZ00427 229 LYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRE 308 (1205)
T ss_pred HHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeeccccccc
Confidence 99999999999999999999999999999 7999999999999988641
Q ss_pred -----------------CceEEEeecCCCcccCCceEEeCCCCc--hh--------------------------------
Q 005849 264 -----------------SDFLTIATTRPETLFGDVALAVNPQDE--HY-------------------------------- 292 (674)
Q Consensus 264 -----------------~~~l~v~Tt~Petl~~~~av~v~p~~~--~y-------------------------------- 292 (674)
+.+++|||||||||+||+||||||+++ +|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v 388 (1205)
T PTZ00427 309 NSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDLKI 388 (1205)
T ss_pred cccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccccEE
Confidence 368999999999999999999999864 11
Q ss_pred ------hhccCcEEecCCC--------CCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCC--C----eeeec
Q 005849 293 ------SQFIGMMAIVPMT--------YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL--P----ILNVM 352 (674)
Q Consensus 293 ------~~l~G~~~~~P~~--------~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l--~----~~~~~ 352 (674)
++|+|.+|.+|+. .++.+||++++||++++|||+||+|||||++||+++++||| | +++++
T Consensus 389 ~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~v 468 (1205)
T PTZ00427 389 VNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPL 468 (1205)
T ss_pred EEEeechhhCCCeeeCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCcccccccccc
Confidence 2456788887762 26789999999999999999999999999999999999999 2 78999
Q ss_pred cCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHh
Q 005849 353 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEK 432 (674)
Q Consensus 353 ~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~ 432 (674)
|++|+|++++|.|+|+.++|||+.|+++|+++|++++.+++.|+||+|||||+||++++++||||+++++++++++++
T Consensus 469 d~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~-- 546 (1205)
T PTZ00427 469 DANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNN-- 546 (1205)
T ss_pred CCCceecCCCcccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCceEechhH-HHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHHHHHhh--------h-------
Q 005849 433 GELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQ--------K------- 496 (674)
Q Consensus 433 ~~~~~~P~~~-~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------- 496 (674)
++++|+|+++ +++|.+||++++||||||||+||+|||+|+|++ ++..++..+++++.+.... .
T Consensus 547 ~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~-~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~ 625 (1205)
T PTZ00427 547 ETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEK-METVICVESIKHLEELSGVKNINDLHRHFIDHIEI 625 (1205)
T ss_pred CccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCC-CCeEeccCCHHHHHHHhccccchhhcccccChhhc
Confidence 4799999999 699999999999999999999999999999975 5567778888776543320 1
Q ss_pred ---cCC-CcceEecCCeeeeeccCCccchhccCCCCC-ChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcc
Q 005849 497 ---YGK-NVEIYQDPDVLDTWFSSALWPFSTLGWPDV-SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFS 571 (674)
Q Consensus 497 ---~~~-~~~~~~~~dvld~Wfds~~~~~~~~~~~~~-~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~ 571 (674)
++. ...++|++||||||||||+||+++++||.+ ++++|+++||+|++++|+||+|+|+++|++++.+++++.||+
T Consensus 626 ~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK 705 (1205)
T PTZ00427 626 KNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFK 705 (1205)
T ss_pred cCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhccHHHHHHHHHHHhcCCCCcc
Confidence 111 124899999999999999999999999986 458899999999999999999999999999999999999999
Q ss_pred eeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC--CCccccCHHHHH-HHHHHHHHHHHHHHHHHh
Q 005849 572 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA--GQDLSLSIERLT-ANKAFTNKLWNAGKFILQ 648 (674)
Q Consensus 572 ~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~--~~d~~fs~~~l~-~~~~~~~kl~n~~~f~~~ 648 (674)
+|++||+++|.+|+|||||+||+|+|.+++++||+|+|||||++... .+|++|+++.+. ..+++++++||+++|+.+
T Consensus 706 ~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~ 785 (1205)
T PTZ00427 706 NLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQ 785 (1205)
T ss_pred eeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998644 699999999986 489999999999999998
Q ss_pred cCCCCC--------Ch--hHHHHHHHhHHHHHh
Q 005849 649 NLPSQN--------DI--SRWEILLAYKVCVLT 671 (674)
Q Consensus 649 ~~~~~~--------~~--~~~~~L~~~~~~~~~ 671 (674)
++.++. .. .....+...|+|||+
T Consensus 786 ~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs 818 (1205)
T PTZ00427 786 EVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFS 818 (1205)
T ss_pred ccccccccccccCCcCcccccccCCHHHHHHHH
Confidence 876422 10 012345678999986
|
|
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-137 Score=1237.56 Aligned_cols=607 Identities=26% Similarity=0.437 Sum_probs=551.6
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+.+.||+ ++|++|+++|+++++|++..+ .++++|+|++||||+||.|||||+++++++|+++||+||+||+|++++|
T Consensus 4 ~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~G 83 (1159)
T PLN02882 4 EGKDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFG 83 (1159)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCc
Confidence 3567899 899999999999999998654 3567899999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHcCCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHH
Q 005849 136 TDHAGIATQLVVEKMLAAEGIK----RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVE 211 (674)
Q Consensus 136 ~D~~Gl~~e~~ve~~~~~~g~~----~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~ 211 (674)
|||||+|||.++++.+ |++ ..++++++|.+.|++|+.++.+.+++++++||+++||+++|.|+|++|.+.++|
T Consensus 84 wD~hGlPiE~~vek~l---gi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~ 160 (1159)
T PLN02882 84 WDCHGLPVEYEIDKKL---GIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWW 160 (1159)
T ss_pred cCCCCcHHHHHHHHHc---CCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHH
Confidence 9999999999988766 543 335899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceEEcccceeccCCCCcccccchh--hccCCCCeeEEEEEeecCC--CceEEEeecCCCcccCCceEEeCC
Q 005849 212 AFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGR--SDFLTIATTRPETLFGDVALAVNP 287 (674)
Q Consensus 212 ~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~kf~~~~~--~~~l~v~Tt~Petl~~~~av~v~p 287 (674)
+|.+|+++|+||++.++|+|||.|+|+||++|+ +|++..++++|++|++.++ +.+++|||||||||+||+||+|||
T Consensus 161 ~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP 240 (1159)
T PLN02882 161 VFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNP 240 (1159)
T ss_pred HHHHHHHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECC
Confidence 999999999999999999999999999999888 7999999999999999774 379999999999999999999999
Q ss_pred CCc------------------hh-------------------------------hhccCcEEecCCC-----CCceeeee
Q 005849 288 QDE------------------HY-------------------------------SQFIGMMAIVPMT-----YGRHVPII 313 (674)
Q Consensus 288 ~~~------------------~y-------------------------------~~l~G~~~~~P~~-----~~~~vpii 313 (674)
+++ ++ ++|+|+++.+|+- .++.+||+
T Consensus 241 ~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi 320 (1159)
T PLN02882 241 NFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVV 320 (1159)
T ss_pred CCcEEEEEecCCCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEE
Confidence 976 22 1688999987762 14689999
Q ss_pred ecccccccCCCcceeeCCCCChhhHHHHHHhCC-----CeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcc
Q 005849 314 SDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL-----PILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAV 388 (674)
Q Consensus 314 ~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l-----~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~ 388 (674)
+++||++++|||+||+|||||++||++|+++|| |+++++|++|+|++++|.|+|+.++|||+.|+++|+++|.++
T Consensus 321 ~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~ 400 (1159)
T PLN02882 321 ADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLV 400 (1159)
T ss_pred ccCccCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCcc
Confidence 999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhH-HHHHHHHHhcCCCceeecccCCCcc
Q 005849 389 KKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHR 467 (674)
Q Consensus 389 ~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~-~~~~~~~l~~l~DW~iSRq~~WG~p 467 (674)
+.+++.|+||+|||||+|+++++++||||+++++++++++++ ++++|+|++. ++++.+||++++||||||||+||+|
T Consensus 401 ~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~--~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtP 478 (1159)
T PLN02882 401 KSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENN--KQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTP 478 (1159)
T ss_pred ceeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhh--CCcEEECCcchhhHHHHHHhcCcccceeeccccCCc
Confidence 999999999999999999999999999999999999999976 4799999999 5899999999999999999999999
Q ss_pred cceeeecCCcccEEEeCChhHHHHHHhh-----------------hcCC-CcceEecCCeeeeeccCCccchhccCCCCC
Q 005849 468 IPVWYIVGKEEEYIVARNADEALEKAHQ-----------------KYGK-NVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529 (674)
Q Consensus 468 iP~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~-~~~~~~~~dvld~Wfds~~~~~~~~~~~~~ 529 (674)
||+|+|++ ++..++..+++++.+.... .++. ...++|++||||+|||||+||+++.+||.+
T Consensus 479 IPvw~~~~-~~~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e 557 (1159)
T PLN02882 479 LPIWISDD-GEEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFE 557 (1159)
T ss_pred cceEEeCC-CCeEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCccc
Confidence 99999976 4557777888776654321 1111 136899999999999999999999999987
Q ss_pred ChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHH
Q 005849 530 SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADAL 609 (674)
Q Consensus 530 ~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~l 609 (674)
+++.|+++||+|++++|+||+|+|++++++++.++.++.||+++++||++++.+|+|||||+||+|+|.+++++||+|+|
T Consensus 558 ~~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaL 637 (1159)
T PLN02882 558 NKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADAL 637 (1159)
T ss_pred ChhHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCC--CCccccCHHHHHH-HHHHHHHHHHHHHHHHhcCCC--------CCChh--HH-HHHHHhHHHHHh
Q 005849 610 RFTISLGTA--GQDLSLSIERLTA-NKAFTNKLWNAGKFILQNLPS--------QNDIS--RW-EILLAYKVCVLT 671 (674)
Q Consensus 610 R~~l~~~~~--~~d~~fs~~~l~~-~~~~~~kl~n~~~f~~~~~~~--------~~~~~--~~-~~L~~~~~~~~~ 671 (674)
||||++.++ .+|++|+.+.+.. .+++++++||+++|+++++.+ +.+.. .+ ..+...|+|||+
T Consensus 638 R~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls 713 (1159)
T PLN02882 638 RLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINS 713 (1159)
T ss_pred HHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHH
Confidence 999998765 6889999999887 467999999999999987744 33311 11 234577999986
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-136 Score=1212.44 Aligned_cols=605 Identities=32% Similarity=0.522 Sum_probs=549.6
Q ss_pred CCCCCCCCCCCh-HHHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCe
Q 005849 54 NNKDTLPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPT 130 (674)
Q Consensus 54 ~~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V 130 (674)
.|...-|..+|+ ++|++||++|+++++|++.. +.++++|+|++||||+||.|||||+++++++|+++||+||+|++|
T Consensus 10 lp~t~f~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v 89 (912)
T PRK05743 10 LPKTDFPMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDA 89 (912)
T ss_pred CCCCCCCCCCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcc
Confidence 344455677998 89999999999999999753 345778999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHH
Q 005849 131 LWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210 (674)
Q Consensus 131 ~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~ 210 (674)
+|++||||||+|||.++++.+ |.+..++++++|.+.|++|++++.+.++++|++||+++||+++|+|+||.|.++++
T Consensus 90 ~~~~G~D~~Glpie~~~ek~l---~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~ 166 (912)
T PRK05743 90 PYVPGWDCHGLPIELKVEKKL---GKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANII 166 (912)
T ss_pred cCCCCcCCCccHhHHHHHHHc---CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHH
Confidence 999999999999999998765 56667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCC-------CceEEEeecCCCcccCCceE
Q 005849 211 EAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGR-------SDFLTIATTRPETLFGDVAL 283 (674)
Q Consensus 211 ~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~-------~~~l~v~Tt~Petl~~~~av 283 (674)
++|.+|+++|+||++.++|+|||.|+|+|||+||+|++..++++||+|++.+. +.+++|||||||||+||+||
T Consensus 167 ~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~ai 246 (912)
T PRK05743 167 RALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAI 246 (912)
T ss_pred HHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEE
Confidence 99999999999999999999999999999999999999999999999999763 47899999999999999999
Q ss_pred EeCCCCc---------hh---------------------------hhccCcEEecCCCCCceeeeeecccccccCCCcce
Q 005849 284 AVNPQDE---------HY---------------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (674)
Q Consensus 284 ~v~p~~~---------~y---------------------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v 327 (674)
+|||+++ +| ++|+|+++.||++ ++++||++++||++++|||+|
T Consensus 247 av~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~-~~~~pvi~~~~V~~~~GTG~V 325 (912)
T PRK05743 247 AVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFY-DRDSPVILGDHVTLDAGTGLV 325 (912)
T ss_pred EECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCCC-CCeeeEeCCCccCCCCCcCeE
Confidence 9999984 55 4689999999995 789999999999999999999
Q ss_pred eeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcc
Q 005849 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (674)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i 407 (674)
|+||+||++||++++++|||+++++|++|++++++|.|+|+.++||+++|+++|+++|.+++.+++.|++|+|||||++|
T Consensus 326 h~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pv 405 (912)
T PRK05743 326 HTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPV 405 (912)
T ss_pred EeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccccccchH--HHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCC
Q 005849 408 EPLVSKQWFVTMEP--LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARN 485 (674)
Q Consensus 408 ~~~~~~qwfi~~~~--~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~ 485 (674)
++++++|||+++++ ++++++++++ +++|+|++.++++.+||++++||||||||+||+|||+|+|++ ++..++..+
T Consensus 406 i~r~~~QWFi~~~~~~~k~~~l~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~-~g~~~~~~~ 482 (912)
T PRK05743 406 IFRATPQWFISMDKKGLREQALKAIE--KVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKE-TGELHPTPE 482 (912)
T ss_pred EEEecCcccEeCChHHHHHHHHHHHc--ccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECC-CCcEeecHH
Confidence 99999999999998 9999999997 599999999999999999999999999999999999999975 344444222
Q ss_pred hhH----HHHHHhh----------hcC-CCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhh
Q 005849 486 ADE----ALEKAHQ----------KYG-KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDIL 550 (674)
Q Consensus 486 ~~~----~~~~~~~----------~~~-~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii 550 (674)
... ..++... -++ +...+.+++||||||||||+++++..++. . +++||+|++++|+||+
T Consensus 483 ~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~~----~--~~~~P~Dl~~~G~Di~ 556 (912)
T PRK05743 483 LIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQR----P--ELGYPADLYLEGSDQH 556 (912)
T ss_pred HHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcCc----c--ccCCCceEEEeccccc
Confidence 111 1111100 011 13468999999999999999998877631 1 2689999999999999
Q ss_pred hhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHH
Q 005849 551 FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLT 630 (674)
Q Consensus 551 ~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~ 630 (674)
|+|++++++.++++.+..||++|++||+++|.+|+|||||+||+|+|.+++++||+|++|||++++++++|++|+.+.+.
T Consensus 557 r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~~~~~~D~~~s~~~l~ 636 (912)
T PRK05743 557 RGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYSGDVRISDEILK 636 (912)
T ss_pred chHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHhcCCCCCeeecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998777999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 631 ANKAFTNKLWNAGKFILQNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 631 ~~~~~~~kl~n~~~f~~~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
++++.+++|||+++|+++|+.++++. .+...|...|+|+|+
T Consensus 637 ~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~ 680 (912)
T PRK05743 637 QVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALH 680 (912)
T ss_pred HHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHH
Confidence 99999999999999999999886632 224567788999985
|
|
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-135 Score=1212.06 Aligned_cols=607 Identities=27% Similarity=0.438 Sum_probs=548.9
Q ss_pred CCCCCCCCCCCh-HHHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCe
Q 005849 54 NNKDTLPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPT 130 (674)
Q Consensus 54 ~~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V 130 (674)
.|...-|..+|+ ++|++||++|+++++|++..+ .++++|+|++||||+||.||||||+|++++|+++||+||+||+|
T Consensus 15 lp~t~f~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v 94 (961)
T PRK13804 15 LPQTAFPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDA 94 (961)
T ss_pred CCCCCCCCCCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 344445677898 899999999999999998653 45678999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHH
Q 005849 131 LWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210 (674)
Q Consensus 131 ~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~ 210 (674)
+|++||||||||||.++++.+..+|+.++++++++|.+.|++|+.++++.++++|++||+++||+++|.|+||.|+++++
T Consensus 95 ~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~ 174 (961)
T PRK13804 95 NYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIA 174 (961)
T ss_pred cCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHH
Confidence 99999999999999999988877788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCC------CceEEEeecCCCcccCCceEE
Q 005849 211 EAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVALA 284 (674)
Q Consensus 211 ~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~------~~~l~v~Tt~Petl~~~~av~ 284 (674)
++|.+|+++|+||++.+||+|||.|+|+|||+||+|.+..++++||+|++.+. +.+++|||||||||+||+||+
T Consensus 175 ~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aia 254 (961)
T PRK13804 175 REFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAIS 254 (961)
T ss_pred HHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEE
Confidence 99999999999999999999999999999999999999999999999999652 478999999999999999999
Q ss_pred eCCCCc-------------------h-------------------hh--------hccCcEEecCCCCCc-----eeeee
Q 005849 285 VNPQDE-------------------H-------------------YS--------QFIGMMAIVPMTYGR-----HVPII 313 (674)
Q Consensus 285 v~p~~~-------------------~-------------------y~--------~l~G~~~~~P~~~~~-----~vpii 313 (674)
|||+++ + |+ +|+|+++.||++ ++ .+||+
T Consensus 255 v~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~-~~~~~~~~~pvi 333 (961)
T PRK13804 255 YSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLD-GLDGYEFEVPVL 333 (961)
T ss_pred ECCCCceEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCC-CcccccceeEEE
Confidence 999973 3 23 689999999996 56 89999
Q ss_pred ecccccccCCCcceeeCCCCChhhHHHHHHhCC-CeeeeccCCCcccccccc--------cCCCCHHHHHHHHHHHHHHc
Q 005849 314 SDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL-PILNVMNKDGTLNEVAGL--------FRGLDRFEARKKLWSDLEET 384 (674)
Q Consensus 314 ~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l-~~~~~~~~~G~~~e~~g~--------~~g~~~~~ar~~i~~~L~~~ 384 (674)
+++||++++|||+||+||+||++||++++++|| |+++++|++|++++++|. |+|+.+.|||+.|+++|+++
T Consensus 334 ~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~ 413 (961)
T PRK13804 334 DGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEA 413 (961)
T ss_pred ecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhC
Confidence 999999999999999999999999999999999 999999999999998887 89999999999999999999
Q ss_pred CCcccccccccccccccCCCCcccceeeccccccchH-------HHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCce
Q 005849 385 GLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP-------LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457 (674)
Q Consensus 385 g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~-------~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ 457 (674)
|.+++.+++.|++|+|||||+||++++++||||++++ ++++++++++ +++|+|+..++++.+||++++|||
T Consensus 414 g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~--~v~~~P~~~~~r~~~~i~~~~DWc 491 (961)
T PRK13804 414 GLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAID--KTRFVPAAGQNRLYNMIEDRPDWV 491 (961)
T ss_pred CCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHHh--ccEEECHHHHHHHHHHHhcCccce
Confidence 9999999999999999999999999999999999998 9999999996 699999999999999999999999
Q ss_pred eecccCCCcccceeeecCCcccEEEeCCh----hHHHHHHh--------------hhcCCCcceEecCCeeeeeccCCcc
Q 005849 458 ISRQLWWGHRIPVWYIVGKEEEYIVARNA----DEALEKAH--------------QKYGKNVEIYQDPDVLDTWFSSALW 519 (674)
Q Consensus 458 iSRq~~WG~piP~~~~~~~~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~~~~~~dvld~Wfds~~~ 519 (674)
|||||+||+|||+|+|++ +..++.... .+...+.. ..+++...++|++||||||||||++
T Consensus 492 ISRQR~WG~PIP~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s 569 (961)
T PRK13804 492 ISRQRAWGVPIPIFVAED--GEILMDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGST 569 (961)
T ss_pred eeeeccCCceeeEEEcCC--CCEeccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCC
Confidence 999999999999999954 232222111 11111110 0111234699999999999999987
Q ss_pred chhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhh
Q 005849 520 PFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 520 ~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
+...... +.+| .||+|++++|+||+|+|++++++++.++.++.||++|++||+++|.+|+|||||+||+|+|.+
T Consensus 570 ~~~~~~~----~~~~--~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ 643 (961)
T PRK13804 570 HAFVLED----RPDL--KWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQD 643 (961)
T ss_pred ccccccC----Cccc--CCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHH
Confidence 7654321 2334 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 600 TIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 600 ll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
++++||+|++|||+++.++++|++|+.+.+..+++.+++|||++||+++|+.++++. .+...+...|+|+|+
T Consensus 644 ii~~yGaD~lRl~lls~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~ 718 (961)
T PRK13804 644 VIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLH 718 (961)
T ss_pred HHHhcCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHH
Confidence 999999999999999877799999999999999999999999999999999887643 234567788999985
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-134 Score=1199.86 Aligned_cols=596 Identities=30% Similarity=0.491 Sum_probs=535.8
Q ss_pred Ch-HHHHHHHHHHHhCCCCCCCCC-CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCc
Q 005849 64 DF-TSEERIYNWWESQGYFKPNFE-RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGI 141 (674)
Q Consensus 64 ~~-~~E~~~~~~W~~~~~f~~~~~-~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl 141 (674)
++ ++|++||++|+++++|++..+ ..+++|+|++||||+||.||||||+|++++|+++||+||+||+|+|++||||||+
T Consensus 4 ~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGl 83 (974)
T PLN02843 4 NSVTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGL 83 (974)
T ss_pred ChHHhhHHHHHHHHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCc
Confidence 45 789999999999999998654 2456799999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCc
Q 005849 142 ATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGL 221 (674)
Q Consensus 142 ~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGl 221 (674)
|||.++++.+.. .+.+++++++|+++|++|++++.+.|+++|++||++.||+++|+|+||+|.+.++++|.+|+++|+
T Consensus 84 pie~~vek~l~~--~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~Gl 161 (974)
T PLN02843 84 PIELKVLQSLDQ--EARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGY 161 (974)
T ss_pred HHHHHHHHHhch--hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCC
Confidence 999998877632 155678999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccceeccCCCCcccccchhhccC-CCCeeEEEEEeecCC-------------CceEEEeecCCCcccCCceEEeCC
Q 005849 222 IYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGR-------------SDFLTIATTRPETLFGDVALAVNP 287 (674)
Q Consensus 222 iy~~~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~~~kf~~~~~-------------~~~l~v~Tt~Petl~~~~av~v~p 287 (674)
||++.+||+|||.|+|+|||+||+|.+ ..++++||+|++.+. +.+++|||||||||+||+||+|||
T Consensus 162 Iyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP 241 (974)
T PLN02843 162 IYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVND 241 (974)
T ss_pred EEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECC
Confidence 999999999999999999999999997 579999999999753 248999999999999999999999
Q ss_pred CCc-------------h-----------------------------------------------hhhccCcEEecCCCCC
Q 005849 288 QDE-------------H-----------------------------------------------YSQFIGMMAIVPMTYG 307 (674)
Q Consensus 288 ~~~-------------~-----------------------------------------------y~~l~G~~~~~P~~~~ 307 (674)
+++ | +++|+|+++.||+. +
T Consensus 242 ~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~-~ 320 (974)
T PLN02843 242 KLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLY-N 320 (974)
T ss_pred CCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCC-C
Confidence 954 1 26799999999995 7
Q ss_pred ceeeeee-cccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHH-HHHHHHHHHHHHcC
Q 005849 308 RHVPIIS-DKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRF-EARKKLWSDLEETG 385 (674)
Q Consensus 308 ~~vpii~-~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~-~ar~~i~~~L~~~g 385 (674)
+++||+. ++||++++|||+||+|||||++||+++++||||+++++|++|++++++|.|+|+.+. |||+.|+++|+++|
T Consensus 321 ~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g 400 (974)
T PLN02843 321 RESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAG 400 (974)
T ss_pred CceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCC
Confidence 8999975 899999999999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred CcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCC
Q 005849 386 LAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWG 465 (674)
Q Consensus 386 ~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG 465 (674)
.+++.+++.|+|||||||++||++|+++||||++++++++++++++ +++|+|+..++++.+||++++||||||||+||
T Consensus 401 ~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG 478 (974)
T PLN02843 401 SLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAID--KVKWIPAQGENRIRAMVSGRSDWCISRQRTWG 478 (974)
T ss_pred CeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHh--ccEEEChHHHHHHHHHHhcCcceeeeeccccc
Confidence 9999999999999999999999999999999999999999999996 59999999999999999999999999999999
Q ss_pred cccceeeecCCcccEEE-eCChhH---HHHHHh--------------hhc-CCCcceEecCCeeeeeccCCccchhccCC
Q 005849 466 HRIPVWYIVGKEEEYIV-ARNADE---ALEKAH--------------QKY-GKNVEIYQDPDVLDTWFSSALWPFSTLGW 526 (674)
Q Consensus 466 ~piP~~~~~~~~~~~~~-~~~~~~---~~~~~~--------------~~~-~~~~~~~~~~dvld~Wfds~~~~~~~~~~ 526 (674)
+|||+|++.+ ++..++ ...+.. +.+... ..+ ++...+.+++||||||||||+++....+.
T Consensus 479 ~pIP~~~~~~-~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~ 557 (974)
T PLN02843 479 VPIPVFYHVE-TKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGS 557 (974)
T ss_pred cEEEEEEEcC-CCCEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhcc
Confidence 9999999965 333332 222221 111110 011 11335889999999999999977654432
Q ss_pred CCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHh----
Q 005849 527 PDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK---- 602 (674)
Q Consensus 527 ~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~---- 602 (674)
..+.+||+|++++|+||+|+|++++++.++++.++.||+++++||+++|.+|+|||||+||+|+|.++++
T Consensus 558 ------~~~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~ 631 (974)
T PLN02843 558 ------REGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKN 631 (974)
T ss_pred ------ccccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccc
Confidence 1234799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----hhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--hhHHHHHHHhHHHHHh
Q 005849 603 -----EFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQND--ISRWEILLAYKVCVLT 671 (674)
Q Consensus 603 -----~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~--~~~~~~L~~~~~~~~~ 671 (674)
+||+|+||||+++.++++|++|+.+.++++++.+++|||+++|+++|+.++++ ..+..++...|+|+|+
T Consensus 632 ~~~~~~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLs 707 (974)
T PLN02843 632 QKQEPAYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALF 707 (974)
T ss_pred cccccccChHHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHH
Confidence 79999999999998889999999999999999999999999999999988764 1234556677999986
|
|
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-133 Score=1181.43 Aligned_cols=601 Identities=35% Similarity=0.639 Sum_probs=551.3
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
.++.||+ ++|++||++|++++.|++..+.++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|||
T Consensus 6 ~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D 85 (800)
T PRK13208 6 LPKKYDPEELEEKWQKIWEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWD 85 (800)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcC
Confidence 3678999 899999999999999998766667889999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHH
Q 005849 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (674)
|||+|+|.++++.+ |+++.++++++|.+.|++|++++.+.|++++++||+++||+++|.|+||+|.++++++|.+|+
T Consensus 86 ~~Glpie~~~ek~~---g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~ 162 (800)
T PRK13208 86 DNGLPTERKVEKYY---GIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLY 162 (800)
T ss_pred CCcchHHHHHHHHh---CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHH
Confidence 99999998887644 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccC
Q 005849 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297 (674)
Q Consensus 218 ~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G 297 (674)
++|+||++.++|+|||.|+|+|||+||+|++..++++||+|++.+ +.+++|||||||||+|++||+|||++++|++|+|
T Consensus 163 ~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~~~~ikf~~~~-~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g 241 (800)
T PRK13208 163 KKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGKLNYIKFPVED-GEEIEIATTRPELLPACVAVVVHPDDERYKHLVG 241 (800)
T ss_pred HCCCeeecCcccccCCCCCCccchhhhccccccceEEEEEEEecC-CCEEEEEeCCcchhhhCeEEEECCCchHHHHhcC
Confidence 999999999999999999999999999999999999999999985 5689999999999999999999999999999999
Q ss_pred cEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHH
Q 005849 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKL 377 (674)
Q Consensus 298 ~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i 377 (674)
+.+.+|++ ++++||++++||++++|||+||+||+|+++||++++++|||+++++|++|++++++|.|+|++++|||++|
T Consensus 242 ~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i 320 (800)
T PRK13208 242 KTAIVPLF-GVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKI 320 (800)
T ss_pred CEEEcCCC-CCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHH
Confidence 99999995 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCC-Cc
Q 005849 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIK-DW 456 (674)
Q Consensus 378 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~-DW 456 (674)
++.|+++|++++.+++.|++|+|||||+++++++++||||++++++++++++++ +++|+|++.++++.+||++++ ||
T Consensus 321 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~--~~~~~P~~~~~~~~~~l~~~~~DW 398 (800)
T PRK13208 321 VEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGK--EINWYPEHMRVRLENWIEGLNWDW 398 (800)
T ss_pred HHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhc--CcEEECHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999999995 589999999999999999988 99
Q ss_pred eeecccCCCcccceeeecCCcccEEEeCChhHH----HHHHh-----hhcCCCcceEecCCeeeeeccCCccchhccCCC
Q 005849 457 CISRQLWWGHRIPVWYIVGKEEEYIVARNADEA----LEKAH-----QKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWP 527 (674)
Q Consensus 457 ~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~ 527 (674)
||||||+||+|||+|+|++ ++..+++. ..++ ...+. ..|+. ..++|++|||||||||+++|++.++||
T Consensus 399 ~ISRqr~WG~pIP~~~~~~-~g~~~~~~-~~~l~~~~~~d~~~~~~~~~~g~-~~~~~~~dvlD~WfdS~~~~~~~~~~~ 475 (800)
T PRK13208 399 CISRQRYFGTPIPVWYCKD-CGHPILPD-EEDLPVDPTKDEPPGYKCPQCGS-PGFEGETDVMDTWATSSITPLIVTGWE 475 (800)
T ss_pred eeeeccccCCcceEEEeCC-CCCeecCc-hhhhccCchhhccccccccccCC-cCEEecCCEEEEEEeCCchHHHHhCCC
Confidence 9999999999999999976 34444331 1111 00001 11221 358999999999999999999999998
Q ss_pred CCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChh
Q 005849 528 DVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGAD 607 (674)
Q Consensus 528 ~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD 607 (674)
.+. .+|++|||+|++++|+||+++|++++++++.++.++.||+++++||++++.+|+|||||+||+|+|.|++++||+|
T Consensus 476 ~~~-~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D 554 (800)
T PRK13208 476 RDE-DLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGAD 554 (800)
T ss_pred CCh-hhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCcc
Confidence 765 6799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHhHHHHHh
Q 005849 608 ALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 608 ~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
++|||++.+++++|++|+.+.+..+++++++|||+++|++. +.+.......+.+...|+|+++
T Consensus 555 ~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~-~~~~~~~~~~~~~~~~D~~il~ 617 (800)
T PRK13208 555 AVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLH-FSADPEPDKAEVLEPLDRWILA 617 (800)
T ss_pred HHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHh-cccccccCccccCCHHHHHHHH
Confidence 99999996666999999999999999999999999999873 3321111122345667888875
|
|
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-134 Score=1157.87 Aligned_cols=552 Identities=41% Similarity=0.772 Sum_probs=485.1
Q ss_pred HHHHHHHhCCCCCCC--CCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHH
Q 005849 70 RIYNWWESQGYFKPN--FERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVV 147 (674)
Q Consensus 70 ~~~~~W~~~~~f~~~--~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~v 147 (674)
+||++|+++++|+.. .++++++|+|++||||+||.|||||+++++++|+++||+||+||+|++++||||||+|+|.++
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 699999999999987 455678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-cCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc
Q 005849 148 EKMLAA-EGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (674)
Q Consensus 148 e~~~~~-~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~ 226 (674)
++.+.. .+.+..++++++|++.|++|++++.+.+++++++||+++||+++|+|+||+|.++++++|.+|+++|+||++.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 887632 2335678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCcccccchhhccCCCCeeEEEEEeecCCC-ceEEEeecCCCcccCCceEEeCCC-----------------
Q 005849 227 YMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQ----------------- 288 (674)
Q Consensus 227 ~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~-~~l~v~Tt~Petl~~~~av~v~p~----------------- 288 (674)
++|+|||.|+|+|||+||+|++..++++||+|++.+.+ .+|+|||||||||+||+||+|||+
T Consensus 161 ~pv~w~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~ 240 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEVEYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLV 240 (601)
T ss_dssp EEEEEETTTTEEE-GGGEEEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHH
T ss_pred CCCCcCcccccchhhhhcccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHH
Confidence 99999999999999999999999999999999998865 499999999999999999999999
Q ss_pred ------------CchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCC
Q 005849 289 ------------DEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG 356 (674)
Q Consensus 289 ------------~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G 356 (674)
+.++++|+|+++.+|++ ++.+||++++||++++|||+||+|||||++||+++++++||+++++|++|
T Consensus 241 ~~~~~~~~~~~~~~~g~~L~g~~~~~P~~-~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G 319 (601)
T PF00133_consen 241 EKLSKQEKTKLEDFRGKELVGLKYIHPLT-GREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDG 319 (601)
T ss_dssp HHHHTTTSSSEEEEECHHHTTSEEE-TTS-SSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTS
T ss_pred HHHHhhhhhcccccCcceecCcEeccccc-cceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCc
Confidence 66789999999999994 79999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCce
Q 005849 357 TLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (674)
Q Consensus 357 ~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~ 436 (674)
++++.+|.|+|++++|||+.|+++|+++|++++.+++.|++|+|||||++|++++++||||++++++++++++++ +++
T Consensus 320 ~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~--~i~ 397 (601)
T PF00133_consen 320 RFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALE--KIK 397 (601)
T ss_dssp TBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHH--TSE
T ss_pred eEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcc--cce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 799
Q ss_pred EechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHHHHH--------------hhhc-CCCc
Q 005849 437 IMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKA--------------HQKY-GKNV 501 (674)
Q Consensus 437 ~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~ 501 (674)
|+|+..++++.+||++++||||||||+||+|||+|++++ ++...+..+..+..... .+.+ ..+.
T Consensus 398 ~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (601)
T PF00133_consen 398 FYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCED-CGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGG 476 (601)
T ss_dssp ESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETT-SEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSS
T ss_pred EEcccchhhhhhhccccccchhhccCCCCccceeeeccc-Cccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999987 33343333333322111 0111 2345
Q ss_pred ceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeC
Q 005849 502 EIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRD 581 (674)
Q Consensus 502 ~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d 581 (674)
.+.+++||||||||||++|++.+++|.+++.+|++|||+|++++|+||+++|++++++++.++.++.||+++++||+++|
T Consensus 477 ~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld 556 (601)
T PF00133_consen 477 ELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLD 556 (601)
T ss_dssp EEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEE
T ss_pred ceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhhHHHHhHhhccccccCCchheeeecccccc
Confidence 78999999999999999999999999987799999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCCccccC
Q 005849 582 SQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLS 625 (674)
Q Consensus 582 ~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs 625 (674)
.+|+|||||+||+|+|.+++++||||++|||+++ +.+.+|++||
T Consensus 557 ~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 557 EDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp TTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred cceeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCcccCcccC
Confidence 9999999999999999999999999999999995 5559999986
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-132 Score=1183.33 Aligned_cols=607 Identities=32% Similarity=0.554 Sum_probs=544.1
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
|+.||+ ++|++||++|+++++|++.. +.++++|+|++|||||||.|||||++|++++|+++||+||+||+|++++||
T Consensus 3 ~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~ 82 (861)
T TIGR00392 3 PMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGW 82 (861)
T ss_pred CCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCc
Confidence 466999 89999999999999999754 345778999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHH
Q 005849 137 DHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (674)
Q Consensus 137 D~~Gl~~e~~ve~~~~~~g~-~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~ 215 (674)
||||+|||.++++.+...+. +...+++++|.+.|++|+.++.+.++++|++||+++||+++|.|+||.|.++++++|.+
T Consensus 83 D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~ 162 (861)
T TIGR00392 83 DTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKE 162 (861)
T ss_pred CCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHH
Confidence 99999999999887632221 22235678999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCceEEcccceeccCCCCcccccchhhccC----CCCeeEEEEEeecCCCc--------eEEEeecCCCcccCCceE
Q 005849 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE----EPGTLYYIKYRVAGRSD--------FLTIATTRPETLFGDVAL 283 (674)
Q Consensus 216 L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~----~~~~~~~~kf~~~~~~~--------~l~v~Tt~Petl~~~~av 283 (674)
|+++|+||++.++|+|||.|+|+|||+||+|++ ..++++||+|++.+.+. +++|||||||||+||+||
T Consensus 163 l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai 242 (861)
T TIGR00392 163 AHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAI 242 (861)
T ss_pred HHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeee
Confidence 999999999999999999999999999999987 78999999999976544 899999999999999999
Q ss_pred EeCCCCc-----------hh--------------------------hhccCcEEecCCCCCcee------ee-eeccccc
Q 005849 284 AVNPQDE-----------HY--------------------------SQFIGMMAIVPMTYGRHV------PI-ISDKYVD 319 (674)
Q Consensus 284 ~v~p~~~-----------~y--------------------------~~l~G~~~~~P~~~~~~v------pi-i~~~~V~ 319 (674)
+|||+++ +| ++|+|+++.||++ ++++ || ++++||+
T Consensus 243 ~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~-~~~~~~~~~~p~v~~~~~V~ 321 (861)
T TIGR00392 243 AVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLY-DFVSQLKEGAPVVIGGDHVT 321 (861)
T ss_pred eeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCC-ccccccccCCcEEeCCCCCC
Confidence 9999975 33 4689999999995 6777 86 5569999
Q ss_pred ccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCccccccc-------ccCCCCHHHHHHHHHHHHHHcCCcccccc
Q 005849 320 KEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-------LFRGLDRFEARKKLWSDLEETGLAVKKEP 392 (674)
Q Consensus 320 ~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g-------~~~g~~~~~ar~~i~~~L~~~g~~~~~~~ 392 (674)
+++|||+||+|||||++||++++++|||+++++|++|+++++.+ .|+|+++.|||++|+++|+++|++++.++
T Consensus 322 ~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~ 401 (861)
T TIGR00392 322 TEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEK 401 (861)
T ss_pred CCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeee
Confidence 99999999999999999999999999999999999999876554 58999999999999999999999999999
Q ss_pred cccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceee
Q 005849 393 HTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWY 472 (674)
Q Consensus 393 ~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~ 472 (674)
+.|.+|+|||||++|++++++||||++++++++++++++ +++|+|+..++++.+||++++||||||||+||+|||+|+
T Consensus 402 ~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~--~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~ 479 (861)
T TIGR00392 402 ITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIK--KVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWY 479 (861)
T ss_pred EecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhC--CcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEEE
Confidence 999999999999999999999999999999999999995 699999999999999999999999999999999999999
Q ss_pred ecCCcccEEEeCChhHHHHHHhh--------------------hcCCCcceEecCCeeeeeccCCccchhccCCCCCChh
Q 005849 473 IVGKEEEYIVARNADEALEKAHQ--------------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAD 532 (674)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~ 532 (674)
|++++ ..++..++++...+... .+++...+.|++|||||||||+++|++..+||.+. .
T Consensus 480 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~-~ 557 (861)
T TIGR00392 480 CEDTG-EPIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFEN-E 557 (861)
T ss_pred ECCCC-CCcCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCCc-c
Confidence 98633 34666666665432110 12222568999999999999999999999998765 5
Q ss_pred hhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHH
Q 005849 533 DFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFT 612 (674)
Q Consensus 533 ~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~ 612 (674)
+|++|||+|++++|+||+++|+.++++.++++.+..||+++++||++++.+|+|||||+||+|+|.|++++||+|++|||
T Consensus 558 ~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ 637 (861)
T TIGR00392 558 KFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLY 637 (861)
T ss_pred hhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHH
Confidence 79999999999999999999999999999888899999999999999988999999999999999999999999999999
Q ss_pred HhcCCCCCccccCHHHHHHHHH-HHHHHHHHHHHHH--hcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 613 ISLGTAGQDLSLSIERLTANKA-FTNKLWNAGKFIL--QNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 613 l~~~~~~~d~~fs~~~l~~~~~-~~~kl~n~~~f~~--~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
+++.++.+|++|+++.+....+ +.+++||+++|++ +++.++++. .+...+...|+|+++
T Consensus 638 ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~ 702 (861)
T TIGR00392 638 VASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILS 702 (861)
T ss_pred HHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHH
Confidence 9999559999999999988555 8999999999998 777766531 122345667888875
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-119 Score=1083.37 Aligned_cols=601 Identities=23% Similarity=0.368 Sum_probs=506.2
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCCC----CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFER----GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~----~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~ 134 (674)
++.+++ ++|++||++|+++++|+.+.+. ++++|++++||||+||.|||||++|++++|+++||+||+||+|+|++
T Consensus 10 ~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~ 89 (1084)
T PLN02959 10 ARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPF 89 (1084)
T ss_pred chhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 467888 8999999999999999997653 23779999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHH---HHcCCCc----------------------cccCHHHHHHHHHHHHHH-------------
Q 005849 135 GTDHAGIATQLVVEKML---AAEGIKR----------------------VELSRDEFTKRVWEWKEK------------- 176 (674)
Q Consensus 135 G~D~~Gl~~e~~ve~~~---~~~g~~~----------------------~~l~~e~f~~~~~~~~~~------------- 176 (674)
||||||+||+..+++.. .+.|..+ +++.+++|.+.|++++.+
T Consensus 90 G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~ 169 (1084)
T PLN02959 90 AFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRS 169 (1084)
T ss_pred CcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhh
Confidence 99999999999988753 3445432 345667888888877644
Q ss_pred --------------------HHHHHHHHHHHhccccCCCCccccCC--hhHHHHHHHHHHHHHHcCceEEcccceeccCC
Q 005849 177 --------------------YGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPN 234 (674)
Q Consensus 177 --------------------~~~~~~~~l~~lgi~~Dw~~~~~T~~--~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~ 234 (674)
|...++++|++||+++||+|+|.|+| |.|.++++|+|.+|+++|+||++.++|+|||.
T Consensus 170 ~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~ 249 (1084)
T PLN02959 170 FGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPL 249 (1084)
T ss_pred cCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCC
Confidence 33678999999999999999999999 99999999999999999999999999999999
Q ss_pred CCcccccchhhccCCCCeeEE--EEEeec-----------CCCceEEEeecCCCcccCCceEEeCCCCc-----------
Q 005849 235 LQTAVSDLEVEYSEEPGTLYY--IKYRVA-----------GRSDFLTIATTRPETLFGDVALAVNPQDE----------- 290 (674)
Q Consensus 235 ~~t~lsd~Ev~~~~~~~~~~~--~kf~~~-----------~~~~~l~v~Tt~Petl~~~~av~v~p~~~----------- 290 (674)
|+|+|||+|++|++..+++.| |||++. +.+.++++||||||||+||+||+|||+.+
T Consensus 250 ~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~ 329 (1084)
T PLN02959 250 DGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEV 329 (1084)
T ss_pred CCCCchhhHHhcCCCCCcceeEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeE
Confidence 999999999999998888877 568753 34579999999999999999999999976
Q ss_pred -----h------h------------------hhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHH-
Q 005849 291 -----H------Y------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL- 340 (674)
Q Consensus 291 -----~------y------------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~- 340 (674)
+ | ++|+|+.+.+|++....+||+++.||++++|||+||+||+|+++||++
T Consensus 330 ~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~ 409 (1084)
T PLN02959 330 FILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMAL 409 (1084)
T ss_pred EEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHH
Confidence 1 4 579999999999643349999999999999999999999999999998
Q ss_pred ---------HHHhCC--------CeeeeccCCCc----------------------------------cccc---ccccC
Q 005849 341 ---------ARKLGL--------PILNVMNKDGT----------------------------------LNEV---AGLFR 366 (674)
Q Consensus 341 ---------~~~~~l--------~~~~~~~~~G~----------------------------------~~e~---~g~~~ 366 (674)
+++||| +++.++|.+|. +.+. +|.|+
T Consensus 410 ~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~ 489 (1084)
T PLN02959 410 SDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYA 489 (1084)
T ss_pred HhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcC
Confidence 577887 45778777653 2232 68999
Q ss_pred CCCHHHHHHHHHHHHHHcCCccc-ccccccccccccCCCCcccceeeccccccch--HHHHHHHHHHHhCCceEechhHH
Q 005849 367 GLDRFEARKKLWSDLEETGLAVK-KEPHTLRVPRSQRGGEVIEPLVSKQWFVTME--PLAEKALHAVEKGELTIMPERFE 443 (674)
Q Consensus 367 g~~~~~ar~~i~~~L~~~g~~~~-~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~--~~~~~~~~~i~~~~~~~~P~~~~ 443 (674)
|+.|.|||++|+++|+++|+++. .++ ..|+|+|||++|++++++||||+++ +++++++++++ +++|+|+..+
T Consensus 490 G~~v~eAr~~Ii~~L~~~G~l~~~~ep---~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~--~v~~~P~~~~ 564 (1084)
T PLN02959 490 GRKVQEAKPLIKKKLIEAGQAILYSEP---EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLS--KMNLYSDETR 564 (1084)
T ss_pred CcCHHHHHHHHHHHHHhCCCceeeeEc---CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHc--ccEEECHHHH
Confidence 99999999999999999998874 454 2589999999999999999999998 69999999995 6999999999
Q ss_pred HHHHHHHhcCCCceeecccCCCcccce---eeecCCccc--EEEeCChhHHHHHHhhhcCCC---cceEe-cCCeeeeec
Q 005849 444 KIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVARNADEALEKAHQKYGKN---VEIYQ-DPDVLDTWF 514 (674)
Q Consensus 444 ~~~~~~l~~l~DW~iSRq~~WG~piP~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~dvld~Wf 514 (674)
+++.+||++++||||||||+||||||+ |++++++++ |+...++.+..... ..++.+ +...+ ++||+|+||
T Consensus 565 ~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~-~~~g~~~~~i~~~~~~~dV~D~wF 643 (1084)
T PLN02959 565 HGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGG-DMYGKDKSSIKPEQMTDEVWDFVF 643 (1084)
T ss_pred HHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHHHHhhh-hccCCccccCChhhcCccceeEee
Confidence 999999999999999999999999993 344544443 44445555544331 112211 11222 689999999
Q ss_pred cCCccchhccCCCCCC----hhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCc-ceeEeeeeEeCCCCccccc
Q 005849 515 SSALWPFSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF-SHVYLHGLIRDSQGRKMSK 589 (674)
Q Consensus 515 ds~~~~~~~~~~~~~~----~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf-~~v~~hg~v~d~~G~KMSK 589 (674)
+|++||+++ +||.+. +.+|++|||+|++++|+||+++|+.++++.+.++.++.|| +.+++||+++ .+|+||||
T Consensus 644 ~Sg~~p~~t-~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G~KMSK 721 (1084)
T PLN02959 644 CGGPLPKSS-DIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LNSEKMSK 721 (1084)
T ss_pred cCCCccccc-CCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cCCcCccc
Confidence 999999987 888753 5789999999999999999999999999999999999999 5799999999 89999999
Q ss_pred cCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHhHHH
Q 005849 590 TLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKVC 668 (674)
Q Consensus 590 S~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~~~~~~L~~~~~~ 668 (674)
|+||+|+|.+++++||+|++||||++..+ .+|.+|+.+.+.. ...+++|.++|+..++.......+.+.+...|+|
T Consensus 722 SkGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~---~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~D~w 798 (1084)
T PLN02959 722 STGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANA---AILRLTKEIAWMEEVLAAESSLRTGPPSTYADRV 798 (1084)
T ss_pred cCCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHH---HHHHHHHHHHHHHHhhhhhcccCCcccCCHHHHH
Confidence 99999999999999999999999998866 8999999988764 4555667666766654321110112235678999
Q ss_pred HHh
Q 005849 669 VLT 671 (674)
Q Consensus 669 ~~~ 671 (674)
+|+
T Consensus 799 ils 801 (1084)
T PLN02959 799 FEN 801 (1084)
T ss_pred HHH
Confidence 986
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-117 Score=1054.49 Aligned_cols=573 Identities=25% Similarity=0.391 Sum_probs=495.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHH
Q 005849 66 TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQL 145 (674)
Q Consensus 66 ~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~ 145 (674)
++|++||++|+++++|+.+.+ .+++|+|++||||+||.|||||+++++++|+++||+||+|++|+|++|||+||+|++.
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~-~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~ 80 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD-DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILG 80 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC-CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHH
Confidence 589999999999999998754 4678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC------CccccCHHHHHHHH--HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHH
Q 005849 146 VVEKMLAAEGI------KRVELSRDEFTKRV--WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (674)
Q Consensus 146 ~ve~~~~~~g~------~~~~l~~e~f~~~~--~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (674)
.+++.....+. ...++++++|.+.| ++|++++...++++|++||+++||+|+|+|+||.|.++++|+|.+|+
T Consensus 81 ~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~ 160 (938)
T TIGR00395 81 LAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLK 160 (938)
T ss_pred HHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHH
Confidence 88875433221 34578899999987 89999999999999999999999999999999999999999999999
Q ss_pred HcCceEEcccceeccCCCCcccccchhhccCCCC--eeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCc-----
Q 005849 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG--TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDE----- 290 (674)
Q Consensus 218 ~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~--~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~----- 290 (674)
++|+||++.++|+|||.|+|+|||+|+++.+..+ .+++|+|++.+.+.++++||||||||+|++||+|||+++
T Consensus 161 e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~ 240 (938)
T TIGR00395 161 ELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAE 240 (938)
T ss_pred HCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEE
Confidence 9999999999999999999999999999887654 679999999877779999999999999999999999986
Q ss_pred ----------------hh-------------hhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHH
Q 005849 291 ----------------HY-------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLA 341 (674)
Q Consensus 291 ----------------~y-------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~ 341 (674)
+| ++|+|+.+.+|++ ++++||++++||++++|||+||+||+|+++||+++
T Consensus 241 ~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~-~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~ 319 (938)
T TIGR00395 241 VGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVV-GPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIAL 319 (938)
T ss_pred eCCcEEEEeHHHHHhhhhcccceeEEEEEchHhccCCEEECCCC-CCeeEEeecceeecCCCcceEEeCCCCCHHHHHHH
Confidence 23 6899999999984 78999999999999999999999999999999998
Q ss_pred HHh--------------CCCeeeeccC---------------------------------------CCcccccccccCCC
Q 005849 342 RKL--------------GLPILNVMNK---------------------------------------DGTLNEVAGLFRGL 368 (674)
Q Consensus 342 ~~~--------------~l~~~~~~~~---------------------------------------~G~~~e~~g~~~g~ 368 (674)
+++ +++++.+++. +|+|++++|.|+|+
T Consensus 320 ~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~ 399 (938)
T TIGR00395 320 EDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGM 399 (938)
T ss_pred HHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCc
Confidence 874 3444544422 46777788999999
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce-eeccccccch--HHHHHHHHHHHhCCceEechhHHHH
Q 005849 369 DRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTME--PLAEKALHAVEKGELTIMPERFEKI 445 (674)
Q Consensus 369 ~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~-~~~qwfi~~~--~~~~~~~~~i~~~~~~~~P~~~~~~ 445 (674)
++.|||++|+++|+++|.+++.+.+.+ .|+|+|||++++++ +++||||+++ +++++++++++ +++|+|+..+++
T Consensus 400 ~v~ear~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~--~~~~~P~~~~~~ 476 (938)
T TIGR00395 400 KVSEAKEKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLE--GMRIIPEEVKNA 476 (938)
T ss_pred CHHHhHHHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHh--cCEEeCHHHHHH
Confidence 999999999999999999998766533 57788999999998 9999999999 59999999997 589999999999
Q ss_pred HHHHHhcCCCceeecccCCCcccce---eeecCCccc--EEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccc
Q 005849 446 YNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWP 520 (674)
Q Consensus 446 ~~~~l~~l~DW~iSRq~~WG~piP~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~ 520 (674)
+.+||++++||||||||+||+|||+ |.+++.+++ |+...++.+..... .++. . ....+++|+||.++..+
T Consensus 477 ~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~--~~~~-~--~l~~ev~D~~~~~~~~~ 551 (938)
T TIGR00395 477 FEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKD--YYGN-E--QMTDEFFDYIFLGKGDV 551 (938)
T ss_pred HHHHHhhhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhcc--CCCh-H--HCCcccCceEEECCCCh
Confidence 9999999999999999999999997 666654443 22222332222110 0110 0 12467899999875444
Q ss_pred hhccCCCCC----ChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCc-ceeEeeeeEeCCCCccccccCCCcc
Q 005849 521 FSTLGWPDV----SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVI 595 (674)
Q Consensus 521 ~~~~~~~~~----~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf-~~v~~hg~v~d~~G~KMSKS~gN~i 595 (674)
...++|.. .+++|++|||+|++++|+||+++|...+++++.++.+..|| +++++||++++ +|+|||||+||+|
T Consensus 552 -~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~-~G~KMSKSlGNvI 629 (938)
T TIGR00395 552 -KNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVML-EGKKMSKSKGNVL 629 (938)
T ss_pred -hhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEe-CCccccCcCCCCC
Confidence 33455543 14689999999999999999999988888887777665555 89999999995 9999999999999
Q ss_pred ChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005849 596 DPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNL 650 (674)
Q Consensus 596 ~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~ 650 (674)
+|.+++++||+|++||||++... ++|++|+++.+.++.+++++++|+++++....
T Consensus 630 ~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~ 685 (938)
T TIGR00395 630 TLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKES 685 (938)
T ss_pred CHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998865 99999999999999999999999999877543
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-110 Score=987.05 Aligned_cols=530 Identities=29% Similarity=0.457 Sum_probs=447.7
Q ss_pred CCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCc
Q 005849 63 FDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGI 141 (674)
Q Consensus 63 ~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl 141 (674)
||+ ++|++||++|+++++|+...+.++++|+++++||||||.|||||+++++++|+++||+||+||+|++++|||+||+
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl 80 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGL 80 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCCCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCCh
Confidence 788 8999999999999999987766678899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCc
Q 005849 142 ATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGL 221 (674)
Q Consensus 142 ~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGl 221 (674)
|+|.++ .+.|+++. +|++++++.|+++|++||+++||+++|.|+||+|.+++|++|.+|+++|+
T Consensus 81 pie~~a----~~~g~~p~------------~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGl 144 (842)
T TIGR00396 81 PAENAA----IKRGIHPA------------KWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGL 144 (842)
T ss_pred HHHHHH----HHcCCCHH------------HHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 977665 34577764 68899999999999999999999999999999999999999999999999
Q ss_pred eEEcccceeccCCCCcccccchhhccC---CC-----------------------------------------------C
Q 005849 222 IYQGSYMVNWSPNLQTAVSDLEVEYSE---EP-----------------------------------------------G 251 (674)
Q Consensus 222 iy~~~~~v~w~p~~~t~lsd~Ev~~~~---~~-----------------------------------------------~ 251 (674)
||++.++|+|||.|+|+||++||++.. .. +
T Consensus 145 iy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s 224 (842)
T TIGR00396 145 AYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKS 224 (842)
T ss_pred eEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhccccc
Confidence 999999999999999999999995311 11 2
Q ss_pred eeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhh---------------------------------hccCc
Q 005849 252 TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYS---------------------------------QFIGM 298 (674)
Q Consensus 252 ~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~---------------------------------~l~G~ 298 (674)
..++++|++.+.+.+|+|||||||||+|+++|+|||+++++. .++|+
T Consensus 225 ~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (842)
T TIGR00396 225 EGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGI 304 (842)
T ss_pred ceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCC
Confidence 347888998876679999999999999999999999997542 27899
Q ss_pred EEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccC------------CCcccccccccC
Q 005849 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK------------DGTLNEVAGLFR 366 (674)
Q Consensus 299 ~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~------------~G~~~e~~g~~~ 366 (674)
++.||++ ++.+||+.++||++++|||+||+|||||++||++++++|||+++++++ +|++++ .|.|+
T Consensus 305 ~~~~P~~-~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~-~~~~~ 382 (842)
T TIGR00396 305 KAIHPLT-GEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVN-SGEFN 382 (842)
T ss_pred EEECCCC-CCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEec-chhcC
Confidence 9999994 899999999999999999999999999999999999999999999984 677775 48999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHH
Q 005849 367 GLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIY 446 (674)
Q Consensus 367 g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~ 446 (674)
|+.+.||++.|+++|+++|++.+. +.
T Consensus 383 Gl~~~~A~~~Ii~~L~~~g~~~~~--------------------------------------------v~---------- 408 (842)
T TIGR00396 383 GLNSSEAREAIIAMLEKEGKGKRK--------------------------------------------VN---------- 408 (842)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCce--------------------------------------------EE----------
Confidence 999999999999999999985321 11
Q ss_pred HHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCC-----hhHHHH----------HHh----hhc-CCCcceEec
Q 005849 447 NHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARN-----ADEALE----------KAH----QKY-GKNVEIYQD 506 (674)
Q Consensus 447 ~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~-----~~~~~~----------~~~----~~~-~~~~~~~~~ 506 (674)
.+++|||||||||||+|||+|+|++ ++.+.+..+ ..+... ... ..| .++..+.|+
T Consensus 409 ----yrlrDW~ISRQRyWG~PIPi~~~~~-~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~re 483 (842)
T TIGR00396 409 ----YRLRDWLFSRQRYWGEPIPIIHCED-GGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRE 483 (842)
T ss_pred ----eecccceeecccccCCceEEEEECC-CCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeC
Confidence 1478999999999999999999975 333332221 111000 000 112 124468999
Q ss_pred CCeeeeeccCCccchhccCCCCCC-----hhhhhhcCCcceeEEeehhh--hhHHHHHH----HHhhhhcCCCCcceeEe
Q 005849 507 PDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHDIL--FFWVARMV----MMGIEFTGSVPFSHVYL 575 (674)
Q Consensus 507 ~dvld~Wfds~~~~~~~~~~~~~~-----~~~f~~~~P~d~~~~G~Dii--~~w~~~~~----~~~~~~~~~~Pf~~v~~ 575 (674)
+|||||||||+ ||+.++.+|.+. ++.|++|||+|++++|+|+. |.|++++. ...-.+.++.||+++++
T Consensus 484 tDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~ 562 (842)
T TIGR00396 484 TDTMDTFAGSS-WYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLIN 562 (842)
T ss_pred CCCCCCcccCC-HHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhc
Confidence 99999999988 999888877652 46788999999999999864 44444442 22222567899999999
Q ss_pred eeeEeC----CCCc---------------------------cccccCCCccChhhHHhhhChhHHHHHHhcCC-CCCccc
Q 005849 576 HGLIRD----SQGR---------------------------KMSKTLGNVIDPIDTIKEFGADALRFTISLGT-AGQDLS 623 (674)
Q Consensus 576 hg~v~d----~~G~---------------------------KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~-~~~d~~ 623 (674)
|||+++ .+|+ |||||+||+|+|.+++++||+|++|||+++.+ ++++++
T Consensus 563 ~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~ 642 (842)
T TIGR00396 563 QGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLE 642 (842)
T ss_pred cceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCc
Confidence 999998 8888 99999999999999999999999999999765 599999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHhHHHHHh
Q 005849 624 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 624 fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
|+.+.+++++++++||||+++++++++.+++. .+...+...|+|+++
T Consensus 643 ~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~-~~~~~l~~~d~~il~ 689 (842)
T TIGR00396 643 WNDSGLEGARRFLDRVWNLFYNILGELDGKTY-LTPTILEEAQKELRR 689 (842)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhhccccc-CCcccCCHHHHHHHH
Confidence 99999999999999999999999888765331 112335667888875
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-111 Score=901.70 Aligned_cols=613 Identities=25% Similarity=0.431 Sum_probs=556.0
Q ss_pred CCCCCCCCh-HHHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 005849 57 DTLPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (674)
Q Consensus 57 ~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~ 133 (674)
.+.++++++ +-|+++.++|.+.+.|+... .+++++|.+.+|||++||-+|-||++..+|+|++.||..|.||.|..-
T Consensus 2 ~~~~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRR 81 (1070)
T KOG0434|consen 2 SEVPENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERR 81 (1070)
T ss_pred CcccccCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeee
Confidence 345788999 78999999999999999753 456889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHH
Q 005849 134 PGTDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEA 212 (674)
Q Consensus 134 ~G~D~~Gl~~e~~ve~~~~~~g~-~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~ 212 (674)
+||||||+|+|..+.+.+...|. +..++|.+++...|+..+-.|...++++..|||-|+||++.|.|++|.+.+.|+|+
T Consensus 82 FGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwv 161 (1070)
T KOG0434|consen 82 FGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWV 161 (1070)
T ss_pred cccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHH
Confidence 99999999999999987733332 23457889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCceEEcccceeccCCCCcccccchh--hccCCCCeeEEEEEeecC-CCceEEEeecCCCcccCCceEEeCCCC
Q 005849 213 FIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAG-RSDFLTIATTRPETLFGDVALAVNPQD 289 (674)
Q Consensus 213 f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~kf~~~~-~~~~l~v~Tt~Petl~~~~av~v~p~~ 289 (674)
|++|+++|++|+|.+.++||..|.|+||+-|. .|++..++++++.|++.+ ....+++|||+|||||+|.|++|||+.
T Consensus 162 FkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~ 241 (1070)
T KOG0434|consen 162 FKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDF 241 (1070)
T ss_pred HHHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCe
Confidence 99999999999999999999999999999776 599999999999999877 678899999999999999999999996
Q ss_pred ch----------------------h----------------hhccCcEEecCCC------CCceeeeeecccccccCCCc
Q 005849 290 EH----------------------Y----------------SQFIGMMAIVPMT------YGRHVPIISDKYVDKEFGTG 325 (674)
Q Consensus 290 ~~----------------------y----------------~~l~G~~~~~P~~------~~~~vpii~~~~V~~~~GTG 325 (674)
.+ | ++|+|+++..+|- ......|+.++||+.+.|||
T Consensus 242 ~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTG 321 (1070)
T KOG0434|consen 242 QYVKIKDKTTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTG 321 (1070)
T ss_pred EEEEEEeccCCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCce
Confidence 41 1 2578888877763 24578999999999999999
Q ss_pred ceeeCCCCChhhHHHHHHhCC-----CeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccc
Q 005849 326 VLKISPGHDHNDYLLARKLGL-----PILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRS 400 (674)
Q Consensus 326 ~v~~~P~h~~~D~~~~~~~~l-----~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~ 400 (674)
+||++|+.|++||++|...|+ -+.|++|++|.++.....|+|..|+||.+.|++.|++.|.+++...+.|+||+|
T Consensus 322 iVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFC 401 (1070)
T KOG0434|consen 322 IVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFC 401 (1070)
T ss_pred eeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCce
Confidence 999999999999999999885 457899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHH-HHHHHHHhcCCCceeecccCCCcccceeeecCCccc
Q 005849 401 QRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFE-KIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (674)
Q Consensus 401 ~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~-~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~ 479 (674)
|||.+|++++++|.||++++.+.+++++..+ +..|+|...+ ++|.|||++.+||.|||.|+||+|||+|..++ .+.
T Consensus 402 WRSDTPLiYraVPsWFVrVk~~v~~ll~nn~--~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD-~ee 478 (1070)
T KOG0434|consen 402 WRSDTPLIYRAVPSWFVRVKNIVDQLLRNNM--KTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDD-YEE 478 (1070)
T ss_pred ecCCChHHHhhccHhhhhHHHHHHHHHhccc--ccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccC-Cce
Confidence 9999999999999999999999999998754 6889999985 79999999999999999999999999999987 778
Q ss_pred EEEeCChhHHHHHHhhhc----------------CCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCccee
Q 005849 480 YIVARNADEALEKAHQKY----------------GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTML 543 (674)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~ 543 (674)
.++..|+.|+.+....+. +....+.|.++|+|.||+||+||+++.+||.++++.|+.-||+|++
T Consensus 479 vVcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadFI 558 (1070)
T KOG0434|consen 479 VVCIGSIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFI 558 (1070)
T ss_pred EEEeccHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCchHhh
Confidence 899999999876543321 1135688999999999999999999999999999999999999999
Q ss_pred EEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC--CCc
Q 005849 544 ETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA--GQD 621 (674)
Q Consensus 544 ~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~--~~d 621 (674)
-+|.||.|+|++.++.++.++.++.||++++++|+|+..+|+|||||+.|.-+|..++++||||+||+||+.++- ...
T Consensus 559 aEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~ 638 (1070)
T KOG0434|consen 559 AEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAEN 638 (1070)
T ss_pred hhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887 789
Q ss_pred cccCHHHHHH-HHHHHHHHHHHHHHHHhcCCC--------CCChhHHHHHHHhHHHHHhh
Q 005849 622 LSLSIERLTA-NKAFTNKLWNAGKFILQNLPS--------QNDISRWEILLAYKVCVLTY 672 (674)
Q Consensus 622 ~~fs~~~l~~-~~~~~~kl~n~~~f~~~~~~~--------~~~~~~~~~L~~~~~~~~~~ 672 (674)
+.|.++.+.+ .++.+..+||+++|+.+|..- |........-+.+|+||++.
T Consensus 639 LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~ 698 (1070)
T KOG0434|consen 639 LKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILAS 698 (1070)
T ss_pred cccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHH
Confidence 9999999988 678899999999999987521 22223333566799999974
|
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-109 Score=986.55 Aligned_cols=547 Identities=27% Similarity=0.427 Sum_probs=458.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHH----------H-cCCCccccCHHHHHHHHHHH
Q 005849 105 LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLA----------A-EGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 105 LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~----------~-~g~~~~~l~~e~f~~~~~~~ 173 (674)
|||||+++++++|+++||+||+||+|++++||||||+|+|.++++... . .|++.+++ ++|. .+++|
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i--~~f~-~~~~~ 77 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEEL--EKFK-DPEYI 77 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHH--HHhc-CHHHH
Confidence 799999999999999999999999999999999999999988875321 1 25544433 3453 36899
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCee
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTL 253 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~ 253 (674)
++++.+.+++++++||+++||+|+|.|+||.|.++++|+|.+|+++|+||++.++|+|||.|+|+|||+|+++.+..+++
T Consensus 78 ~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~ 157 (897)
T PRK12300 78 VEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIV 157 (897)
T ss_pred HHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988766554
Q ss_pred --EEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCc---------------------hhh-------------hccC
Q 005849 254 --YYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDE---------------------HYS-------------QFIG 297 (674)
Q Consensus 254 --~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~---------------------~y~-------------~l~G 297 (674)
+||+|+ .+.+.++++||||||||+||+||+|||+++ +|. +|+|
T Consensus 158 ~~~~ikf~-~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G 236 (897)
T PRK12300 158 EYTLIKFE-ESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIG 236 (897)
T ss_pred eEEEEEEe-CCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcC
Confidence 688998 556789999999999999999999999997 343 6999
Q ss_pred cEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhC--------CCeeeec-----------------
Q 005849 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLG--------LPILNVM----------------- 352 (674)
Q Consensus 298 ~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~--------l~~~~~~----------------- 352 (674)
+.+.+|++ ++.+||++++||++++|||+||+||+||++||+++++++ |+++.++
T Consensus 237 ~~~~~Pl~-~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~ 315 (897)
T PRK12300 237 KKVKNPVT-GKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKL 315 (897)
T ss_pred CEEECCCC-CCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHh
Confidence 99999995 789999999999999999999999999999999999998 6654333
Q ss_pred ------c---------------CCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccccee
Q 005849 353 ------N---------------KDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411 (674)
Q Consensus 353 ------~---------------~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~ 411 (674)
| .+|+|++++|.|+|+.++|||++|+++|+++|++++.+.+.| +|+|+|||++|++++
T Consensus 316 ~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~-~~~~~R~~~~~i~~~ 394 (897)
T PRK12300 316 GIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSN-RPVYCRCGTECVVKV 394 (897)
T ss_pred CCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCC-CCcCcCCCCEEEEEe
Confidence 3 489999999999999999999999999999999999888777 577779999999986
Q ss_pred -eccccccch--HHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccce---eeecCCccc--EEEe
Q 005849 412 -SKQWFVTME--PLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVA 483 (674)
Q Consensus 412 -~~qwfi~~~--~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~---~~~~~~~~~--~~~~ 483 (674)
++||||+++ +++++++++++ +++|+|+..++++.+||++++||||||||+||+|||+ |.+++++++ |+..
T Consensus 395 ~~~QWFi~~~~~~~k~~~~~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~ 472 (897)
T PRK12300 395 VKDQWFIDYSDPEWKELAHKALD--NMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAY 472 (897)
T ss_pred cCCceEEEcCcHHHHHHHHHHHc--cCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEeeeccccchhhhH
Confidence 599999998 79999999995 6999999999999999999999999999999999996 787765444 3333
Q ss_pred CChhHHHHHHh---hhcCCC---cceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHH
Q 005849 484 RNADEALEKAH---QKYGKN---VEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARM 557 (674)
Q Consensus 484 ~~~~~~~~~~~---~~~~~~---~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~ 557 (674)
.++.+.+.... +..-++ .-+....+.+++|++|| +|...+. +.+++|++|||+|++++|+||+++|...+
T Consensus 473 ~~i~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg-~p~~~~~---~~~~~f~~~~P~D~~~~GkDii~~Hl~~~ 548 (897)
T PRK12300 473 YTIAHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTG-IPKEILE---EMREEFLYWYPVDWRHSGKDLIPNHLTFF 548 (897)
T ss_pred HHHHHHHHHcCCChHHCChhhCceEEeCCCccccCchhcC-CCHHHHH---HHHHHHhccCCceEEEeeeccCccHHHHH
Confidence 33322221100 000000 00111123444444444 2333221 12467999999999999999999988888
Q ss_pred HHHhhhhcCCCCc-ceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHH
Q 005849 558 VMMGIEFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAF 635 (674)
Q Consensus 558 ~~~~~~~~~~~Pf-~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~ 635 (674)
++++.++.+..|+ +++++||++++ +|+|||||+||+|+|.+++++||+|++||||++..+ .+|.+|+.+.+....++
T Consensus 549 ~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~~ 627 (897)
T PRK12300 549 IFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRRQ 627 (897)
T ss_pred HHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCCCCCccCHHHHHHHHHH
Confidence 8888888887777 89999999997 999999999999999999999999999999998765 99999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChhHHHHHHHhHHHHHh
Q 005849 636 TNKLWNAGKFILQNLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 636 ~~kl~n~~~f~~~~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
+++++|+++++.+...+ ..+...|+|+++
T Consensus 628 l~r~~~~~~~~~~~~~~-------~~~~~~D~wils 656 (897)
T PRK12300 628 LERFYELAKELIEIGGE-------EELRFIDKWLLS 656 (897)
T ss_pred HHHHHHHHHHHhcCCCc-------cccCHhHHHHHH
Confidence 99999999988764321 134456777765
|
|
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-109 Score=973.89 Aligned_cols=508 Identities=30% Similarity=0.481 Sum_probs=433.9
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~~pP~~nG~-LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~ 134 (674)
.++.||+ ++|++||++|+++++|+... +.++++|+|+++||||||. |||||+++++++|+++||+||+||+|++++
T Consensus 76 ~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~ 155 (963)
T PLN02563 76 AKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPM 155 (963)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccc
Confidence 3788999 89999999999999999865 4457789999999999996 999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHH
Q 005849 135 GTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFI 214 (674)
Q Consensus 135 G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 214 (674)
|||+||+|+|.++ .+.|.++. .|+.++++.|+++|++||+++||++++.|++|+|++++||+|.
T Consensus 156 G~D~~GlPiE~~a----~~~g~~p~------------~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~ 219 (963)
T PLN02563 156 GWDAFGLPAEQYA----IETGTHPK------------ITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFL 219 (963)
T ss_pred cccccCcHHHHHH----HHcCCChH------------HhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHH
Confidence 9999999976543 45576654 5778999999999999999999999999999999999999999
Q ss_pred HHHHcCceEEcccceeccCCCCcccccchhhcc--CCCCe----------------------------------------
Q 005849 215 RLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS--EEPGT---------------------------------------- 252 (674)
Q Consensus 215 ~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~--~~~~~---------------------------------------- 252 (674)
+|+++|+||++.++|+|||.|+|+||++||++. +..+.
T Consensus 220 ~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~n 299 (963)
T PLN02563 220 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRN 299 (963)
T ss_pred HHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHH
Confidence 999999999999999999999999999999874 22222
Q ss_pred ------eEEEEEeecC-----CCceEEEeecCCCcccCCceEEeCCCCc---------------hhhh------------
Q 005849 253 ------LYYIKYRVAG-----RSDFLTIATTRPETLFGDVALAVNPQDE---------------HYSQ------------ 294 (674)
Q Consensus 253 ------~~~~kf~~~~-----~~~~l~v~Tt~Petl~~~~av~v~p~~~---------------~y~~------------ 294 (674)
.++++|++.+ .+.+|+|||||||||+|+++|+|||+++ +|..
T Consensus 300 wiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~ 379 (963)
T PLN02563 300 WIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTE 379 (963)
T ss_pred hccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhh
Confidence 4788899865 2578999999999999999999999996 2321
Q ss_pred --------ccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccC------------
Q 005849 295 --------FIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK------------ 354 (674)
Q Consensus 295 --------l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~------------ 354 (674)
+.|..+.||++ ++++||+.++||++++|||+||+|||||++||++++++|||++++++.
T Consensus 380 ~~~~k~g~~~g~~~~~P~~-~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y 458 (963)
T PLN02563 380 LQKEKTGVFTGSYAINPAT-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAY 458 (963)
T ss_pred ccceecccccCcEEeccCC-CCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccc
Confidence 46889999995 899999999999999999999999999999999999999999999942
Q ss_pred --CCcccccccc----cCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHH
Q 005849 355 --DGTLNEVAGL----FRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALH 428 (674)
Q Consensus 355 --~G~~~e~~g~----~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~ 428 (674)
+|.+. +.|. |.|+.++||+++|+++|+++|++.+
T Consensus 459 ~~~G~l~-ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~--------------------------------------- 498 (963)
T PLN02563 459 TGEGVIV-NSSSSGLDINGLSSKEAAKKVIEWLEETGNGKK--------------------------------------- 498 (963)
T ss_pred cCceeEe-cCCCcccccCCcCHHHHHHHHHHHHHhCCCCCC---------------------------------------
Confidence 24443 2343 9999999999999999999998621
Q ss_pred HHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHH-------HH---------
Q 005849 429 AVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL-------EK--------- 492 (674)
Q Consensus 429 ~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~-------~~--------- 492 (674)
.++| +++|||||||||||+|||+|+|++ +++.+... ++++. ..
T Consensus 499 -----~v~y--------------~lrDW~ISRQRyWG~PIPi~~c~~-cg~~v~v~-e~~Lpv~lpe~~~~~~~~~g~~p 557 (963)
T PLN02563 499 -----KVNY--------------KLRDWLFARQRYWGEPIPVVFLED-SGEPVPVP-ESDLPLTLPELDDFTPTGTGEPP 557 (963)
T ss_pred -----eeEe--------------cCCCceEeeecccCCceEEEEEcC-CCcEEecc-hHhCcccchhhhhcccCCCCCCc
Confidence 1222 589999999999999999999976 34333222 11110 00
Q ss_pred ---Hh----hhc-CCCcceEecCCeeeeeccCCccchhccCCCCCCh-----hhhhhcCCcceeEEeehhh-------hh
Q 005849 493 ---AH----QKY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA-----DDFKKFYPTTMLETGHDIL-------FF 552 (674)
Q Consensus 493 ---~~----~~~-~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~-----~~f~~~~P~d~~~~G~Dii-------~~ 552 (674)
.. ..| .++..+.||+|||||||+|+ ||+.++.+|+++. ..+++|||+|++++|.|+. ||
T Consensus 558 l~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Ss-wy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rf 636 (963)
T PLN02563 558 LAKAVSWVNTVDPSSGKPARRETNTMPQWAGSC-WYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARF 636 (963)
T ss_pred hhcchhhhcCcCcCCCCCcEECCCcCCchhhcc-HHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHH
Confidence 00 011 12456899999999999987 8888888998643 3345799999999999984 89
Q ss_pred HHHHHHHHhhhhcCCCCcceeEeeeeEeC---------CCCc--------------------------------------
Q 005849 553 WVARMVMMGIEFTGSVPFSHVYLHGLIRD---------SQGR-------------------------------------- 585 (674)
Q Consensus 553 w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d---------~~G~-------------------------------------- 585 (674)
|+.+|+.+++ +.++.||+++++|||+++ .+|+
T Consensus 637 w~~~l~~~g~-~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (963)
T PLN02563 637 WHKVLYDIGV-VSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSI 715 (963)
T ss_pred HHHHHHHhhc-cCCcccHHHHhccceeecCccccceecCCCcCcccccccccccccccccccccccccccccccccCCcc
Confidence 9999998888 467899999999999997 6677
Q ss_pred -------cccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHHHHHHHHHHHHH
Q 005849 586 -------KMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFI 646 (674)
Q Consensus 586 -------KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~ 646 (674)
|||||+||+|+|.+++++||||++|||+++..+ .++++|+.+.+.++.++++++||++...
T Consensus 716 ~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~ 784 (963)
T PLN02563 716 RLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGA 784 (963)
T ss_pred cccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888 8999999999999999999999998764
|
|
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-108 Score=967.14 Aligned_cols=519 Identities=28% Similarity=0.465 Sum_probs=439.1
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~ 138 (674)
++.||+ ++|++||++|+++++|+...+.+ ++|+++++||||||.|||||+++++++|+++||+||+|++|++++|||+
T Consensus 2 ~~~y~~~~iE~~w~~~W~~~~~f~~~~~~~-~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 80 (805)
T PRK00390 2 MERYNPKEIEKKWQKYWEENKTFKTTEDSS-KKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDA 80 (805)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCccCC-CCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCC
Confidence 467999 89999999999999999876543 4788999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHH
Q 005849 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (674)
Q Consensus 139 ~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 218 (674)
||+|+|.+++ +.|+++. +|++++++.|+++|++||+++||+++|.|+||+|.++++++|.+|++
T Consensus 81 ~Glpie~~a~----~~g~~~~------------~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 144 (805)
T PRK00390 81 FGLPAENAAI----KTGTHPA------------EWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYE 144 (805)
T ss_pred CCCHHHHHHH----HcCCCHH------------HHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHH
Confidence 9999876653 4576654 78899999999999999999999999999999999999999999999
Q ss_pred cCceEEcccceeccCCCCcccccchhhccC--C-----------------------------------------------
Q 005849 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSE--E----------------------------------------------- 249 (674)
Q Consensus 219 kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~--~----------------------------------------------- 249 (674)
+|+||++.++|+|||.|+|+||++||+... .
T Consensus 145 ~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig 224 (805)
T PRK00390 145 KGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIG 224 (805)
T ss_pred CCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhcc
Confidence 999999999999999999999999997421 1
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhh---------------------------------cc
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ---------------------------------FI 296 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~---------------------------------l~ 296 (674)
.+..++++|++.+.+.+++|||||||||+||+||+|||+++++.. |+
T Consensus 225 ~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 304 (805)
T PRK00390 225 RSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFT 304 (805)
T ss_pred ccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeec
Confidence 124678999998767899999999999999999999999987533 58
Q ss_pred CcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccC--------------CCcccccc
Q 005849 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK--------------DGTLNEVA 362 (674)
Q Consensus 297 G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~--------------~G~~~e~~ 362 (674)
|+++.||++ ++++||+.++||++++|||+||+|||||++||++++++|||+++++|. +|++++.
T Consensus 305 g~~~~~P~~-~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~- 382 (805)
T PRK00390 305 GLYAIHPLT-GEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINS- 382 (805)
T ss_pred CcEEECCCC-CCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEec-
Confidence 999999995 789999999999999999999999999999999999999999999975 4445433
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhH
Q 005849 363 GLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF 442 (674)
Q Consensus 363 g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~ 442 (674)
|.|+|+.+++||++|++.|++.|++. . .+.+
T Consensus 383 ~~~~Gl~~~~a~~~Ii~~L~~~g~~~----------------~----------------------------~v~~----- 413 (805)
T PRK00390 383 GELDGLDSEEAKEAIIAWLEEKGLGK----------------R----------------------------KVNY----- 413 (805)
T ss_pred cccCCCCHHHHHHHHHHHHHHcCCCC----------------C----------------------------ceEE-----
Confidence 88999999999999999999999841 1 1222
Q ss_pred HHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHHH----------------HHh----hhc-CCCc
Q 005849 443 EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALE----------------KAH----QKY-GKNV 501 (674)
Q Consensus 443 ~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~----------------~~~----~~~-~~~~ 501 (674)
+++||||||||+||+|||+|+|++ ++...+. .+++.. ... ..| .++.
T Consensus 414 ---------~l~DW~ISRQR~WG~PIPi~~~~~-~g~~~v~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 481 (805)
T PRK00390 414 ---------RLRDWGISRQRYWGEPIPIIHCED-CGIVPVP--EEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGK 481 (805)
T ss_pred ---------ECCCccccccccCCCceeEEEECC-CCceeCc--hHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCC
Confidence 468999999999999999999965 3332221 111110 000 112 1245
Q ss_pred ceEecCCeeeeeccCCccchhccCCCCCC-----hhhhhhcCCcceeEEeehhh-------hhHHHHHHHHhhhhcCCCC
Q 005849 502 EIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHDIL-------FFWVARMVMMGIEFTGSVP 569 (674)
Q Consensus 502 ~~~~~~dvld~Wfds~~~~~~~~~~~~~~-----~~~f~~~~P~d~~~~G~Dii-------~~w~~~~~~~~~~~~~~~P 569 (674)
.++|++|||||||||+ ||++.+++|+++ ++.|++|||+|++++|+|++ ++|...+..++. ..++.|
T Consensus 482 ~~~re~Dv~DtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~-~~~~~P 559 (805)
T PRK00390 482 PARRETDTMDTFVGSS-WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGL-VSSDEP 559 (805)
T ss_pred CceeCCcccccccccc-cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhc-ccCCcc
Confidence 6999999999999997 999999888642 57899999999999999965 444433333333 467899
Q ss_pred cceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHh
Q 005849 570 FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG-TAGQDLSLSIERLTANKAFTNKLWNAGKFILQ 648 (674)
Q Consensus 570 f~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~-~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~ 648 (674)
|+++++||++ |||||+||+|+|.+++++||||++|||+++. ++++|++|+.+.+.+++++++|+||++++.++
T Consensus 560 fk~v~~~G~v------KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~ 633 (805)
T PRK00390 560 FKKLLTQGMV------KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKG 633 (805)
T ss_pred hhhheecCcE------EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999 9999999999999999999999999999986 45999999999999999999999999999766
Q ss_pred cCCCCCChhHHHHHHHhHHHHHh
Q 005849 649 NLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 649 ~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
+..+++. .+...|+|+++
T Consensus 634 ~~~~~~~-----~~~~~D~~il~ 651 (805)
T PRK00390 634 EAGALDV-----AALSEDKELRR 651 (805)
T ss_pred cccccCc-----ccChhhHHHHH
Confidence 6554442 22356788775
|
|
| >KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-108 Score=890.92 Aligned_cols=592 Identities=24% Similarity=0.379 Sum_probs=519.7
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCC-CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFE-RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~-~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
+..+|. ..++++++-|....++....+ .++..|++.+ +||.||||||+|.|++||+.||+.++|.+|++++|||
T Consensus 27 ~v~~Ns~gr~~q~~evi~~~~~~~~qls~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwD 102 (937)
T KOG0433|consen 27 LVHFNSTGRIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWD 102 (937)
T ss_pred ccccccccchHHHHHHhCChHHHHHHHhhccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCC
Confidence 556666 667779998888877765443 3467799998 9999999999999999999999999999999999999
Q ss_pred CCCchhHH-HHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHH
Q 005849 138 HAGIATQL-VVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (674)
Q Consensus 138 ~~Gl~~e~-~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (674)
|||+|+|. ++.+.+.++ ..+++.-+..++.+.++.+.++.+++.++|+||..||.++|.|+||+|+....++|.+|
T Consensus 103 chGLPiEs~kalssl~~~---~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~l 179 (937)
T KOG0433|consen 103 CHGLPIESTKALSSLTES---EGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKL 179 (937)
T ss_pred cCCCchHHHHHhhhhhhc---cccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHH
Confidence 99999984 554433222 24455667788888999999999999999999999999999999999999999999999
Q ss_pred HHcCceEEcccceeccCCCCcccccchhhccCC-CCeeEEEEEeecC------------CCceEEEeecCCCcccCCceE
Q 005849 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE-PGTLYYIKYRVAG------------RSDFLTIATTRPETLFGDVAL 283 (674)
Q Consensus 217 ~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~-~~~~~~~kf~~~~------------~~~~l~v~Tt~Petl~~~~av 283 (674)
++|||||++.+||+|+|+.+|+||+.|+||.++ .++++|++|++.+ ++.|.+||||+|||||+|.||
T Consensus 180 yekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai 259 (937)
T KOG0433|consen 180 YEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAI 259 (937)
T ss_pred HhccceeccCCcceecCcchhhhhhhhccCCcCCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCcccccccee
Confidence 999999999999999999999999999999875 7899999999864 358999999999999999999
Q ss_pred EeCCCCch-------------h--------------------------hhccCcEEecCCCCCceeeeeecccccccCCC
Q 005849 284 AVNPQDEH-------------Y--------------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGT 324 (674)
Q Consensus 284 ~v~p~~~~-------------y--------------------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GT 324 (674)
++||+..+ | ..|.|.+|.||+.+.+..|++.+++|+++.||
T Consensus 260 ~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GT 339 (937)
T KOG0433|consen 260 SVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGT 339 (937)
T ss_pred eeccccceEEEEeccCCcceEEEEccchhhhhhhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCccc
Confidence 99998642 1 24778899999988899999999999999999
Q ss_pred cceeeCCCCChhhHHHHHHhCCCeeeeccCCCccccccc-ccCCCCHH-HHHHHHHHHHHHcCCcccccccccccccccC
Q 005849 325 GVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRF-EARKKLWSDLEETGLAVKKEPHTLRVPRSQR 402 (674)
Q Consensus 325 G~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g-~~~g~~~~-~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r 402 (674)
|+||++||||++||.++.++|||+.+++|++|+++.++| .+.|+.|. |..+.|+..|. +.+++.+++.|+||+.||
T Consensus 340 GLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWR 417 (937)
T KOG0433|consen 340 GLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWR 417 (937)
T ss_pred ceeecCCCCChHHHHHHhhcCCCcccccCCCCceecccccccccchhhccccHhHHHHHh--hhhhhhhcccccCCcccc
Confidence 999999999999999999999999999999999999988 89999997 56677888777 888999999999999999
Q ss_pred CCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEE
Q 005849 403 GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIV 482 (674)
Q Consensus 403 ~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~ 482 (674)
+++|++.|+++|||+++++++..+.++++ ++++.|.....++..++..+++|||||||.||+|||++|..+ .++|+.
T Consensus 418 TKKPvIiRAseQWFi~~e~~k~~A~~al~--~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~-~~~~l~ 494 (937)
T KOG0433|consen 418 TKKPVIIRASEQWFIDVEEIKKRASMALD--DVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKN-GGSYLS 494 (937)
T ss_pred cCCceEEecchhheeeHHhhhhHHHHHHh--hceeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecC-CCceee
Confidence 99999999999999999999999999997 599999999999999999999999999999999999999866 355544
Q ss_pred eCChhH-HHHHHhh-----------------hc----CC-CcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCC
Q 005849 483 ARNADE-ALEKAHQ-----------------KY----GK-NVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539 (674)
Q Consensus 483 ~~~~~~-~~~~~~~-----------------~~----~~-~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P 539 (674)
.....+ +..+... .+ ++ ...+.+.+|+||+|||||..+-+..+ +.+-.+
T Consensus 495 ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~--------~~~~~~ 566 (937)
T KOG0433|consen 495 NSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLD--------NEREHV 566 (937)
T ss_pred hHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeecC--------CCCCcc
Confidence 432222 1111100 00 11 12467899999999999976655443 233457
Q ss_pred cceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhh------hChhHHHHHH
Q 005849 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE------FGADALRFTI 613 (674)
Q Consensus 540 ~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~------ygaD~lR~~l 613 (674)
+|++++|.||.++||++.++++++..++.||+.+++|||++|.+|.|||||.||||+|+.+++. ||+|+||||+
T Consensus 567 aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WV 646 (937)
T KOG0433|consen 567 ADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWV 646 (937)
T ss_pred eeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeee
Confidence 8999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred hcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---hhHHHHHHHhHHHHHh
Q 005849 614 SLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQND---ISRWEILLAYKVCVLT 671 (674)
Q Consensus 614 ~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~---~~~~~~L~~~~~~~~~ 671 (674)
+......++...++.|+++.+.+.|+++++||++||+.+++. ..|..+|.--|.+.|.
T Consensus 647 A~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ 707 (937)
T KOG0433|consen 647 AGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQ 707 (937)
T ss_pred ecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHH
Confidence 977778999999999999999999999999999999998885 3788999888888774
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-90 Score=789.96 Aligned_cols=510 Identities=29% Similarity=0.484 Sum_probs=423.0
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCCCCC-CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGS-DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~-~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
...|++ .||++||++|+++++|+.+.+.++ ++|+++++.|||||.|||||+|||+++|++|||+||+||+|++|+|||
T Consensus 2 ~~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwd 81 (814)
T COG0495 2 MSRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 81 (814)
T ss_pred CcccchHHHHHHHHHHHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCccc
Confidence 356787 899999999999999999877665 599999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHH
Q 005849 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (674)
++|+| +++.+.+.|.+|. .|++++++.+++||++||.++||+|++.|+||+|++++||+|.+|+
T Consensus 82 afGlP----ae~~A~~~~~~P~------------~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ 145 (814)
T COG0495 82 AFGLP----AENAAIKIGTDPA------------KWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLY 145 (814)
T ss_pred ccCch----HHHHHHHhCCChH------------HHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHH
Confidence 99999 5666667788887 7899999999999999999999999999999999999999999999
Q ss_pred HcCceEEcccceeccCCCCcccccchhhcc------CC------------------------------------------
Q 005849 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYS------EE------------------------------------------ 249 (674)
Q Consensus 218 ~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~------~~------------------------------------------ 249 (674)
++||||+++.+|+|||.|+|+|+|+||... ..
T Consensus 146 ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nW 225 (814)
T COG0495 146 EKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNW 225 (814)
T ss_pred HCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcC
Confidence 999999999999999999999999999855 11
Q ss_pred --CCeeEEEEEeecCC--CceEEEeecCCCcccCCceEEeCCCCchhh--------------------------------
Q 005849 250 --PGTLYYIKYRVAGR--SDFLTIATTRPETLFGDVALAVNPQDEHYS-------------------------------- 293 (674)
Q Consensus 250 --~~~~~~~kf~~~~~--~~~l~v~Tt~Petl~~~~av~v~p~~~~y~-------------------------------- 293 (674)
.+..+-+.|.+.+. ...+.|+||||.|++|.+.+++-|+++..+
T Consensus 226 Ig~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~ 305 (814)
T COG0495 226 IGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAE 305 (814)
T ss_pred cCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCC
Confidence 11123333444332 356999999999999999999999986321
Q ss_pred ---hccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCC-----------ccc
Q 005849 294 ---QFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG-----------TLN 359 (674)
Q Consensus 294 ---~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G-----------~~~ 359 (674)
-..|..+.||++ +..+||+..+||.+..|||+||.||+|+.+|++.|++|+||+..++...+ . .
T Consensus 306 k~gv~~g~~a~~p~~-~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~-l 383 (814)
T COG0495 306 KDGVFLGGYAINPVN-GEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGV-L 383 (814)
T ss_pred CcceeccccccCCCC-CCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCce-E
Confidence 133566789995 59999999999999999999999999999999999999999998876543 3 2
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEec
Q 005849 360 EVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMP 439 (674)
Q Consensus 360 e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P 439 (674)
-+.|.+.|++..+|...+... ++-+...|||++++
T Consensus 384 inS~~~~gl~~e~a~~~~~~~--------------------------l~~~~~~q~~v~Y~------------------- 418 (814)
T COG0495 384 INSGGLDGLDYEEAKVKIRCG--------------------------LVKRGLGQWFVNYR------------------- 418 (814)
T ss_pred eccccccCcchhHHHHHHHHh--------------------------HHHhcCCceEEecc-------------------
Confidence 245577788777664444433 45566789999865
Q ss_pred hhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHHHHHhh---------hc----------CCC
Q 005849 440 ERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQ---------KY----------GKN 500 (674)
Q Consensus 440 ~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----------~~~ 500 (674)
++||++||||+||.|||+.+|+.. .. ++..+.++...+++ +. ..+
T Consensus 419 -------------lrdW~~srqRywg~pipii~~e~~-~~--~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~ 482 (814)
T COG0495 419 -------------LRDWLKSRQRYWGEPIPIIHCEDC-GV--VPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPD 482 (814)
T ss_pred -------------cchHHHHHHHHhCCCcceeEcccC-Cc--ccCchHhcCcccccccccCCCCCCCCCCcceEEEecCC
Confidence 689999999999999999999752 21 22222222111111 00 123
Q ss_pred cceEecCCeeeeeccCCccchhccCCCCCC------hhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhc------CCC
Q 005849 501 VEIYQDPDVLDTWFSSALWPFSTLGWPDVS------ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT------GSV 568 (674)
Q Consensus 501 ~~~~~~~dvld~Wfds~~~~~~~~~~~~~~------~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~------~~~ 568 (674)
.+.+|+.+|||+|++|+ |++..+..|... ++.|++|||+|++++|+|.+-.|+....+...++. .+.
T Consensus 483 s~~~ret~Tm~~~~~ss-wy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~e 561 (814)
T COG0495 483 STAYRETDTMDTFIDSS-WYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDE 561 (814)
T ss_pred CceeeehhhhhHhcccc-cccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCcc
Confidence 67899999999999999 776665544432 57899999999999999988777766666655553 357
Q ss_pred CcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHH
Q 005849 569 PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFIL 647 (674)
Q Consensus 569 Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~ 647 (674)
||++++++|||+..+|+|||||+||+|+|++++++||||++|+|+++.++ .+|++|+++.+++++++++|+|+++.-..
T Consensus 562 pf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~ 641 (814)
T COG0495 562 PFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHL 641 (814)
T ss_pred chhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhh
Confidence 89999999999954899999999999999999999999999999999998 99999999999999999999999887665
Q ss_pred hc
Q 005849 648 QN 649 (674)
Q Consensus 648 ~~ 649 (674)
..
T Consensus 642 ~~ 643 (814)
T COG0495 642 EK 643 (814)
T ss_pred hc
Confidence 43
|
|
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-85 Score=710.32 Aligned_cols=378 Identities=62% Similarity=1.142 Sum_probs=344.5
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
++|+|++|||||||.|||||+++++++|+++||+||+|++|++++|||+||+|+|.++++.+...+++.+++++++|++.
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999998877666666677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCC
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
|+++++++++.+++++++||+++||++.+.|++|.|.+.++++|.+|+++|+||++.++|+|||.|+|+||+.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev----- 155 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV----- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997322
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
|+|||+++++
T Consensus 156 ----------------------------------------------------------------------c~~cg~~~~~ 165 (382)
T cd00817 156 ----------------------------------------------------------------------CSRSGDVIEP 165 (382)
T ss_pred ----------------------------------------------------------------------cccCCCeEEE
Confidence 8899999999
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHH
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~ 489 (674)
+.++||||+++++++++++.+++++++|+|++.++++.+||++++|||||||++||+|||+|+|++ ++.+++.....+.
T Consensus 166 ~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~-~~~~~~~~~~~~~ 244 (382)
T cd00817 166 LLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKD-GGHWVVAREEDEA 244 (382)
T ss_pred EecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCC-CCcEEecchhHHH
Confidence 999999999999999999999977799999999999999999999999999999999999999975 4455555444444
Q ss_pred HHHHhh--hcC-CCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcC
Q 005849 490 LEKAHQ--KYG-KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTG 566 (674)
Q Consensus 490 ~~~~~~--~~~-~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~ 566 (674)
...+.. .+. ....++++++|+||||||+++|++.++++.+. .+|+++||+|++++|+||+++|+.++++++..+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~-~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g 323 (382)
T cd00817 245 IDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEET-KDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTG 323 (382)
T ss_pred HHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcc-hhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhC
Confidence 333211 111 23478999999999999999999999998765 67999999999999999999999999999988888
Q ss_pred CCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCcccc
Q 005849 567 SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (674)
Q Consensus 567 ~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~f 624 (674)
+.||+++++||++++.+|+|||||+||+|+|+|++++||+|++|||+++.++ .+|.+|
T Consensus 324 ~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 324 KLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred CCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 8899999999999999999999999999999999999999999999999887 888876
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-84 Score=699.73 Aligned_cols=503 Identities=29% Similarity=0.462 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHH
Q 005849 66 TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQL 145 (674)
Q Consensus 66 ~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~ 145 (674)
.+|+.|+++|+++..|.+..+.++++|++.+. |||+|.|||||.|.|++.|++|||+||+||+|++++|||.+|||
T Consensus 34 ~iEk~W~~~~~~~~~~~~~~d~sk~KYiLsMF-PYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLP--- 109 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKDSDKSKKKYILSMF-PYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLP--- 109 (876)
T ss_pred HHHHHHHHHHhcCCccccccccCCCceEEEec-CCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCc---
Confidence 68999999999999998766666777888777 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 146 VVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 146 ~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
+|+++.+.|+.|. .|+.++++.+++||++||++|||+|++.|++|+|+++.||+|.+|+++||+|+.
T Consensus 110 -AENAAiergv~P~------------sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~ 176 (876)
T KOG0435|consen 110 -AENAAIERGVHPA------------SWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQA 176 (876)
T ss_pred -hhhHHHhcCCCch------------hhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhcc
Confidence 7888888999998 688999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCcccccchhhccC-------------------------------------------------CCCeeEEE
Q 005849 226 SYMVNWSPNLQTAVSDLEVEYSE-------------------------------------------------EPGTLYYI 256 (674)
Q Consensus 226 ~~~v~w~p~~~t~lsd~Ev~~~~-------------------------------------------------~~~~~~~~ 256 (674)
+..|||||.++|+|+++||.... ..+...-+
T Consensus 177 Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el 256 (876)
T KOG0435|consen 177 EAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAEL 256 (876)
T ss_pred ccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEE
Confidence 99999999999999999995211 11223456
Q ss_pred EEeecC---CCceEEEeecCCCcccCCceEEeCCCCch------hhh------cc------CcEEecCCCCCceeeeeec
Q 005849 257 KYRVAG---RSDFLTIATTRPETLFGDVALAVNPQDEH------YSQ------FI------GMMAIVPMTYGRHVPIISD 315 (674)
Q Consensus 257 kf~~~~---~~~~l~v~Tt~Petl~~~~av~v~p~~~~------y~~------l~------G~~~~~P~~~~~~vpii~~ 315 (674)
.|++.+ .++.|.|+||+||||+|.+.+++.|++.. +++ |. +..+.+|++ |+++||+..
T Consensus 257 ~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~t-g~~iPv~~a 335 (876)
T KOG0435|consen 257 MFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVT-GRAIPVVVA 335 (876)
T ss_pred EEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCC-CceeeEEEe
Confidence 677765 35999999999999999999999999863 122 22 335789995 999999999
Q ss_pred ccccccCCCcceeeCCCCChhhHHHHHHhCCCeeee----ccCCCcccccccccCC-CCHHHHHHHHHHHHHHcCCcccc
Q 005849 316 KYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNV----MNKDGTLNEVAGLFRG-LDRFEARKKLWSDLEETGLAVKK 390 (674)
Q Consensus 316 ~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~----~~~~G~~~e~~g~~~g-~~~~~ar~~i~~~L~~~g~~~~~ 390 (674)
+||....|||+++.||+|+.+|++++++-|+..+.. .+.+|+.++ .+.++| +.+++|+.+|.+.+++.|+.-..
T Consensus 336 ~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~-~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~ 414 (876)
T KOG0435|consen 336 DYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNE-QKAFTNLDIRQNAALKLFQFAERKGVGGYV 414 (876)
T ss_pred chhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhc-cccccchhHHHHHHHHHHHHHHhcCCCcce
Confidence 999999999999999999999999999966544322 344555443 345677 45567888888888877764221
Q ss_pred cccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccce
Q 005849 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV 470 (674)
Q Consensus 391 ~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~ 470 (674)
-. ..|+||.||||||||+|||+
T Consensus 415 vs----------------------------------------------------------~kLkDWLiSRQRyWGTPIPi 436 (876)
T KOG0435|consen 415 VS----------------------------------------------------------YKLKDWLISRQRYWGTPIPI 436 (876)
T ss_pred ec----------------------------------------------------------chhhhhhhhhhhccCCCcce
Confidence 11 25789999999999999999
Q ss_pred eeecCCcccEEEeCChhHHH----------------HHHhh--hc---CCCcceEecCCeeeeeccCCccchhccCCCCC
Q 005849 471 WYIVGKEEEYIVARNADEAL----------------EKAHQ--KY---GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529 (674)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~--~~---~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~ 529 (674)
.+|+. ++..-| .++++- .++.+ ++ .++...+||+|+||||+||+ |||.++-.|++
T Consensus 437 vhc~~-cG~vpV--pes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSs-WYYlRylDpkN 512 (876)
T KOG0435|consen 437 VHCDD-CGAVPV--PESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSS-WYYLRYLDPKN 512 (876)
T ss_pred EEcCC-CCcccC--cHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccc-eeeEeecCCCC
Confidence 99976 333222 222221 11111 11 23457899999999999998 77778877877
Q ss_pred Chhhh-----hhcCCcceeEEe--ehhhhhHHHHHHHHhhh----hcCCCCcceeEeeeeEeCC------CC--------
Q 005849 530 SADDF-----KKFYPTTMLETG--HDILFFWVARMVMMGIE----FTGSVPFSHVYLHGLIRDS------QG-------- 584 (674)
Q Consensus 530 ~~~~f-----~~~~P~d~~~~G--~Dii~~w~~~~~~~~~~----~~~~~Pf~~v~~hg~v~d~------~G-------- 584 (674)
....| ++|+|+|++++| |.++|..+++++.-.+. .....||+.++.+|+|+.. .|
T Consensus 513 ~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ev 592 (876)
T KOG0435|consen 513 PEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEV 592 (876)
T ss_pred cccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHHHh
Confidence 64444 568999999999 67788888888654332 2346899999999998731 11
Q ss_pred -----------------------ccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHHHHHHH
Q 005849 585 -----------------------RKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLW 640 (674)
Q Consensus 585 -----------------------~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~~~kl~ 640 (674)
+|||||++|+|+|.|++.+||+|.+|+|++...+ +++++|++..|.+..+++.|+|
T Consensus 593 ~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw 672 (876)
T KOG0435|consen 593 QQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIW 672 (876)
T ss_pred hhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHH
Confidence 8999999999999999999999999999998888 9999999999999999999999
Q ss_pred HHHHHHHhc
Q 005849 641 NAGKFILQN 649 (674)
Q Consensus 641 n~~~f~~~~ 649 (674)
++...++..
T Consensus 673 ~l~~~~~~a 681 (876)
T KOG0435|consen 673 ALVSQILQA 681 (876)
T ss_pred HHHHHHHHH
Confidence 998776654
|
|
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-74 Score=618.44 Aligned_cols=336 Identities=35% Similarity=0.686 Sum_probs=307.3
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcC-CCccccCHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEG-IKRVELSRDEFTK 168 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g-~~~~~l~~e~f~~ 168 (674)
++|+|.+|||||||+|||||+++++++|+++||+||+|++|++++|||+||+|+|.++++.+...+ ..++++++++|.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999988887653222 2346788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
.|+++++++.+.+++++++||++.||++.+.|++++|.+.++++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999999988866
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
+++
T Consensus 144 -----------------------------------------------------------------------------~v~ 146 (338)
T cd00818 144 -----------------------------------------------------------------------------PLI 146 (338)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 235
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhH
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADE 488 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~ 488 (674)
+++++||||+++++++++++.+++ ++|+|+..++++.+||++++|||||||++||+|+|+|++++ ++..++
T Consensus 147 ~~~~~qwf~~l~~~~~~l~~~~~~--~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~-~~~~~~------ 217 (338)
T cd00818 147 YRATPQWFIRVTKIKDRLLEANDK--VNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCED-CGEVLV------ 217 (338)
T ss_pred EEecCeEEEEcHHHHHHHHHHHhc--CcEECHHHHHHHHHHHhcchhcceeeecccCceeeEEEecC-CCeEEE------
Confidence 677899999999999999999974 78899999999999999999999999999999999999875 233222
Q ss_pred HHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCC
Q 005849 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV 568 (674)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~ 568 (674)
.++++|+||||||++++++..+++.+. .+|+++||+|++++|+||+++|+..+++.++++.+..
T Consensus 218 ---------------~~~~~v~~vWfda~~~~~~~~~~~~~~-~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~~~~ 281 (338)
T cd00818 218 ---------------RRVPDVLDVWFDSGSMPYAQLHYPFEN-EDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKA 281 (338)
T ss_pred ---------------ecCCceEEEEEeCCCCHHHHcCCCCcc-hhhhccCCCeEEeecchHHhHHHHHHHHHHHHhcCCC
Confidence 357899999999999999998998765 6799999999999999999999999999888888889
Q ss_pred CcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCcccc
Q 005849 569 PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (674)
Q Consensus 569 Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~f 624 (674)
||+++++||++++.+|+|||||+||+|+++|++++||+|++||||++.++ .+|++|
T Consensus 282 p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 282 PYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred ccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 99999999999988999999999999999999999999999999999887 888875
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-73 Score=614.82 Aligned_cols=575 Identities=23% Similarity=0.383 Sum_probs=455.1
Q ss_pred CCCCh--HHHHHHHHHHHhCCCCCCCCC----CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 005849 61 KTFDF--TSEERIYNWWESQGYFKPNFE----RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (674)
Q Consensus 61 ~~~~~--~~E~~~~~~W~~~~~f~~~~~----~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~ 134 (674)
..+|. ++|+++|++|+..++|+.+.. .++++|++++|.||+||.||+||+++....|+.+-|+||+|++|+|++
T Consensus 9 ar~d~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPf 88 (1080)
T KOG0437|consen 9 ARRDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPF 88 (1080)
T ss_pred HHHHHHHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeec
Confidence 34554 899999999999999998763 247889999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHH---cCCCcc------------------------------------------------ccCH
Q 005849 135 GTDHAGIATQLVVEKMLAA---EGIKRV------------------------------------------------ELSR 163 (674)
Q Consensus 135 G~D~~Gl~~e~~ve~~~~~---~g~~~~------------------------------------------------~l~~ 163 (674)
|++|.|+||..-+.+..++ .|.++. .+.+
T Consensus 89 gFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~d 168 (1080)
T KOG0437|consen 89 GFHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPD 168 (1080)
T ss_pred ccccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCH
Confidence 9999999986544332211 111110 1122
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHhccccCCCCccccCC--hhHHHHHHHHHHHHHHcCceEEcccceeccCCCCccc
Q 005849 164 DEFTK--RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAV 239 (674)
Q Consensus 164 e~f~~--~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~--~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~l 239 (674)
++..+ ...+|..++.-...++|+++|..+||+|+|.|+| |.|..+|+|+|.+|.+.|.|..|++...|||++++++
T Consensus 169 eEI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpC 248 (1080)
T KOG0437|consen 169 EEIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPC 248 (1080)
T ss_pred HHhhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcc
Confidence 22221 2347888888888999999999999999999875 5689999999999999999999999999999999999
Q ss_pred ccchhhccCCCCeeEEEEEeec-------------CCCceEEEeecCCCcccCCceEEeCCCCch---------------
Q 005849 240 SDLEVEYSEEPGTLYYIKYRVA-------------GRSDFLTIATTRPETLFGDVALAVNPQDEH--------------- 291 (674)
Q Consensus 240 sd~Ev~~~~~~~~~~~~kf~~~-------------~~~~~l~v~Tt~Petl~~~~av~v~p~~~~--------------- 291 (674)
.||+..-+|.+++.-|.-.+++ +...+++++|.|||||+|.|+++|+|+-++
T Consensus 249 mDHDR~sGEgV~PqeytliKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t 328 (1080)
T KOG0437|consen 249 MDHDRASGEGVGPQEYTLIKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIAT 328 (1080)
T ss_pred cccccccCCCCCcceEEEEEEEecccchhhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEee
Confidence 9999999999998876654432 245899999999999999999999999641
Q ss_pred --------h------------------hhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHH--
Q 005849 292 --------Y------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK-- 343 (674)
Q Consensus 292 --------y------------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~-- 343 (674)
| .+++|..+..|++--..+.++|..-|..+.|||+|.++|+.+|+||...+.
T Consensus 329 ~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~ 408 (1080)
T KOG0437|consen 329 ERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLK 408 (1080)
T ss_pred hHHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhh
Confidence 1 246777788888767889999999999999999999999999999998854
Q ss_pred -----hC----------CCeeeecc------------------------------------CCCcccccccccCCCCHHH
Q 005849 344 -----LG----------LPILNVMN------------------------------------KDGTLNEVAGLFRGLDRFE 372 (674)
Q Consensus 344 -----~~----------l~~~~~~~------------------------------------~~G~~~e~~g~~~g~~~~~ 372 (674)
|| +|+|.+.. .+|+| -.|+|.|.+|.+
T Consensus 409 kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~m--lig~y~G~KVe~ 486 (1080)
T KOG0437|consen 409 KKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTM--LIGKYKGEKVED 486 (1080)
T ss_pred hcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceE--EEeccccccHHh
Confidence 23 35555431 02222 248899999999
Q ss_pred HHHHHHHHHHHcCCccc-ccccccccccccCCCCcccceeeccccccchH--HHHHHHHHHHhCCceEechhHHHHHHHH
Q 005849 373 ARKKLWSDLEETGLAVK-KEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP--LAEKALHAVEKGELTIMPERFEKIYNHW 449 (674)
Q Consensus 373 ar~~i~~~L~~~g~~~~-~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~--~~~~~~~~i~~~~~~~~P~~~~~~~~~~ 449 (674)
++.+|..+|.+.|.+++ .|+.. ++-.|||+.++..+++||||++++ +++.+.+++++ ++.+.+..|+.|+.-
T Consensus 487 ~K~~i~~~li~~g~a~~y~EPEk---qVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~--l~~f~dEtR~~fE~t 561 (1080)
T KOG0437|consen 487 AKPKIKTDLIETGDALKYNEPEK---QVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLEN--LNTFSDETRNGFEDT 561 (1080)
T ss_pred hhhHHHHHHHhcccceeecCcch---hhhccCCCceEEEeccchhhhcCcHHHHHHHHHHHhh--hhccCHHHHHHHHHH
Confidence 99999999999999987 55544 456799999999999999999976 88899999984 777788889999999
Q ss_pred HhcCCCceeecccCCCcccce---eeecCCccc--EEEeCChhHHHHHHhhhcCCC-----cceEecC-CeeeeeccCCc
Q 005849 450 LSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVARNADEALEKAHQKYGKN-----VEIYQDP-DVLDTWFSSAL 518 (674)
Q Consensus 450 l~~l~DW~iSRq~~WG~piP~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-dvld~Wfds~~ 518 (674)
|++|..|.|||+.+.|++||| |.+++++|+ |+...++..++.+. -+|.. +...+.+ +|+|.-|--..
T Consensus 562 LdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~d--~~g~~~~plgi~~~QMtdeVwdYvF~~~~ 639 (1080)
T KOG0437|consen 562 LDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHRD--LYGKVEGPLGIKPDQMTDEVWDYVFLNEP 639 (1080)
T ss_pred HHHHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHHh--hccCCcccCCCChhhcCHHHHHHhhccCC
Confidence 999999999999999999998 666666555 44444555554442 22221 1222222 35554444332
Q ss_pred cchhccCCCCC----ChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhh--cCCCCcceeEeeeeEeCCCCccccccCC
Q 005849 519 WPFSTLGWPDV----SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEF--TGSVPFSHVYLHGLIRDSQGRKMSKTLG 592 (674)
Q Consensus 519 ~~~~~~~~~~~----~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~--~~~~Pf~~v~~hg~v~d~~G~KMSKS~g 592 (674)
.+- ....+.+ -+.+|++|||.|++++|+|++..|+..+++...++ ..++| +.+.+||+++ ++++|||||.|
T Consensus 640 ~~k-~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WP-kgiraNGHLm-LNsEKMSKSTG 716 (1080)
T KOG0437|consen 640 YPK-NTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWP-KGIRANGHLM-LNSEKMSKSTG 716 (1080)
T ss_pred CCc-CCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCc-cceeeCceEE-ecchhhccccC
Confidence 211 1222221 16889999999999999999998877777655554 46789 8999999999 89999999999
Q ss_pred CccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005849 593 NVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNL 650 (674)
Q Consensus 593 N~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~ 650 (674)
|+.+.++.+++||+|+.|+.|+.+.. ..|.||..... ...+.||++...++..-+
T Consensus 717 NfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~A---nAaILRLyt~~ew~eEm~ 772 (1080)
T KOG0437|consen 717 NFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANA---NAAILRLYTYVEWIEEMC 772 (1080)
T ss_pred CeeeHHHHHHHhCccceeeeeecccCCcccchhHHhcc---cHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888 89999987654 455677777777765433
|
|
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-71 Score=628.36 Aligned_cols=382 Identities=30% Similarity=0.444 Sum_probs=329.7
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~ 171 (674)
|+|++|||||||.|||||+++++.+|+++||+||+|++|++++|+|+||++++.++ +++|+++.
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a----~~~g~~~~------------ 64 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKA----EQEGLTPK------------ 64 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHH----HHcCCCHH------------
Confidence 58999999999999999999999999999999999999999999999999975554 45687765
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCC
Q 005849 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG 251 (674)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~ 251 (674)
++++++.+.+++++++|||++|+ ...|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+|+|.+|+
T Consensus 65 e~~~~~~~~~~~~l~~LgI~~D~--~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~------ 136 (530)
T TIGR00398 65 ELVDKYHEEFKDDWKWLNISFDR--FIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVE------ 136 (530)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC--CccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhc------
Confidence 56788999999999999999883 2348999999999999999999999999999999999999999986542
Q ss_pred eeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeCC
Q 005849 252 TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISP 331 (674)
Q Consensus 252 ~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P 331 (674)
| .||
T Consensus 137 -----------------------------------------------------------------------g-----~cp 140 (530)
T TIGR00398 137 -----------------------------------------------------------------------G-----TCP 140 (530)
T ss_pred -----------------------------------------------------------------------C-----CCC
Confidence 1 267
Q ss_pred CCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccccee
Q 005849 332 GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411 (674)
Q Consensus 332 ~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~ 411 (674)
.|+.. |.+|..||+||.+ .++.++.+|+|+|||+++|++.
T Consensus 141 ~c~~~----------------~~~g~~ce~cg~~------------------------~~~~~l~~p~~~~~~~~~e~~~ 180 (530)
T TIGR00398 141 KCGSE----------------DARGDHCEVCGRH------------------------LEPTELINPRCKICGAKPELRD 180 (530)
T ss_pred CCCCc----------------ccccchhhhcccc------------------------CCHHHhcCCccccCCCcceEEe
Confidence 77664 4689999999853 4666788999999999999999
Q ss_pred eccccccchHHHHHHHHHHHhCC-ceEechhHHHHHHHHHhc-CCCceeecccC-CCcccceeeecCCcccEEEeCChhH
Q 005849 412 SKQWFVTMEPLAEKALHAVEKGE-LTIMPERFEKIYNHWLSN-IKDWCISRQLW-WGHRIPVWYIVGKEEEYIVARNADE 488 (674)
Q Consensus 412 ~~qwfi~~~~~~~~~~~~i~~~~-~~~~P~~~~~~~~~~l~~-l~DW~iSRq~~-WG~piP~~~~~~~~~~~~~~~~~~~ 488 (674)
++|||++++++++++++.+++++ ..+.|+..++++.+||++ ++|||||||+. ||+|+|.|
T Consensus 181 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~----------------- 243 (530)
T TIGR00398 181 SEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPND----------------- 243 (530)
T ss_pred cceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCC-----------------
Confidence 99999999999999999998543 555688899999999987 99999999999 99999964
Q ss_pred HHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcc-----eeEEeehhhhhHHHHHHHHhhh
Q 005849 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTT-----MLETGHDILFFWVARMVMMGIE 563 (674)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d-----~~~~G~Dii~~w~~~~~~~~~~ 563 (674)
+++|++||||+.+.|++..+++.....+|+++||.| ++++|+||+++|.....++..+
T Consensus 244 -----------------~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~ 306 (530)
T TIGR00398 244 -----------------PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMG 306 (530)
T ss_pred -----------------CCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHh
Confidence 146999999999999988777755446799999999 9999999999864443222222
Q ss_pred hcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHH--HHHHHHHH
Q 005849 564 FTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTAN--KAFTNKLW 640 (674)
Q Consensus 564 ~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~--~~~~~kl~ 640 (674)
+ +..|++++++||++++ +|+|||||+||+|+|.|++++||+|++|||+++.++ .+|++|+++.+... .+++++++
T Consensus 307 ~-~~~~~~~~~~~g~v~~-~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~ 384 (530)
T TIGR00398 307 L-GLPLPTQVFSHGYLTV-EGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLG 384 (530)
T ss_pred C-CCCCCCEEEeeccEEE-CCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 2356799999999995 599999999999999999999999999999999876 99999999999874 67889999
Q ss_pred HHHHHHHhc
Q 005849 641 NAGKFILQN 649 (674)
Q Consensus 641 n~~~f~~~~ 649 (674)
|+++++++.
T Consensus 385 n~~~r~~~~ 393 (530)
T TIGR00398 385 NLLNRTLGF 393 (530)
T ss_pred HHHHHHHHH
Confidence 998776543
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-71 Score=632.92 Aligned_cols=383 Identities=25% Similarity=0.382 Sum_probs=322.3
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHH-HHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFV-TLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~-~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
++|+|++|||||||.|||||++++ +++|+++||+||+|++|.+++|+|+||++++.+++ ++|+++.
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~----~~g~~~~--------- 69 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAK----KEGVTPQ--------- 69 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHH----HcCCCHH---------
Confidence 579999999999999999999997 99999999999999999999999999999766654 4688765
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
++++++.+.|++++++|||++|+ .+.|++++|.+.++++|.+|+++|+||++.++++|||.|+|+|++..|.
T Consensus 70 ---~~~~~~~~~~~~~~~~l~i~~d~--~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~--- 141 (556)
T PRK12268 70 ---ELADKYHEEHKEDFKKLGISYDL--FTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVE--- 141 (556)
T ss_pred ---HHHHHHHHHHHHHHHHcCCcCCC--CcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCcccee---
Confidence 67789999999999999998773 4569999999999999999999999999999999999999999974331
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
|
T Consensus 142 --------------------------------------------------------------------------g----- 142 (556)
T PRK12268 142 --------------------------------------------------------------------------G----- 142 (556)
T ss_pred --------------------------------------------------------------------------c-----
Confidence 1
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
.||.|+.. +.+|.+||.||.+ .++.+...|+|++||++++
T Consensus 143 ~cp~c~~~----------------~~~G~~ce~cg~~------------------------~~~~~l~~p~~~~~~~~~e 182 (556)
T PRK12268 143 TCPYCGYE----------------GARGDQCDNCGAL------------------------LDPTDLINPRSKISGSTPE 182 (556)
T ss_pred cCCCCCCc----------------ccCCchhhhcccc------------------------CChHHhcCCccccCCCcCe
Confidence 25655432 4589999999863 1233455699999999999
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeecccCCCcccceeeecCCcccEEEeCChh
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~ 487 (674)
++.++||||++++++++++++++ ++.++|+..++++.+||+ +++|||||||++||+||| |.+.
T Consensus 183 ~~~~~qwF~~l~~~~~~l~~~~~--~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~------------- 246 (556)
T PRK12268 183 FRETEHFFLDLPAFAERLRAWIE--SSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP-WPGF------------- 246 (556)
T ss_pred EEecceEEEEhHHHHHHHHHHHh--hccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC-CCCC-------------
Confidence 99999999999999999999997 478999999999999998 899999999999999999 5542
Q ss_pred HHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCC-CCC--ChhhhhhcC----CcceeEEeehhhhhHHHHHHHH
Q 005849 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGW-PDV--SADDFKKFY----PTTMLETGHDILFFWVARMVMM 560 (674)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~-~~~--~~~~f~~~~----P~d~~~~G~Dii~~w~~~~~~~ 560 (674)
+..++|+|||+...|.+..+. ... ...+|+.|| |.+++++|+||++||.....++
T Consensus 247 ------------------~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~ 308 (556)
T PRK12268 247 ------------------EGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAM 308 (556)
T ss_pred ------------------CCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHH
Confidence 246899999988777654322 221 124688788 7789999999999886544333
Q ss_pred hhhhc--CCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--HHHH
Q 005849 561 GIEFT--GSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAF 635 (674)
Q Consensus 561 ~~~~~--~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~~~ 635 (674)
..+.. .++| +++++||+++ .+|+|||||+||+|+|.|++++||+|++|||+++.++ .+|++|+++.+.. +.++
T Consensus 309 l~~~~~~~~~P-~~v~~~G~v~-~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~ 386 (556)
T PRK12268 309 LLGSGEPLKLP-DEIVSSEYLT-LEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSEL 386 (556)
T ss_pred HHhcCCCCCCC-CEeeccCCEE-ECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHh
Confidence 33332 4567 6999999998 5999999999999999999999999999999998877 8999999999865 6678
Q ss_pred HHHHHHHHHHHHh
Q 005849 636 TNKLWNAGKFILQ 648 (674)
Q Consensus 636 ~~kl~n~~~f~~~ 648 (674)
+++++|+++++..
T Consensus 387 ~~~l~n~~~r~~~ 399 (556)
T PRK12268 387 ADKYGNLVNRVLS 399 (556)
T ss_pred hhhHHHHHHHHHH
Confidence 8999998665443
|
|
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-69 Score=625.03 Aligned_cols=356 Identities=27% Similarity=0.399 Sum_probs=312.8
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
++|+|++|+|||||.|||||+++++++|+++||+||+|++|++++|+|+||++++. .++++|++++
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~----~A~~~g~~~~---------- 69 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQ----AAEKAGKTPQ---------- 69 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHH----HHHHcCCCHH----------
Confidence 57999999999999999999999999999999999999999999999999998644 4567798876
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCC
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
++++++.+.|+++|++|||++| ..+.|+++.|.+.++++|.+|+++|+||++.+.++|||.|+++|++.|+..
T Consensus 70 --e~~d~~~~~fk~~l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~--- 142 (648)
T PRK12267 70 --EYVDEISAGFKELWKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVD--- 142 (648)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhcc---
Confidence 5678999999999999999988 223489999999999999999999999999999999999999999754310
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
T Consensus 143 -------------------------------------------------------------------------------- 142 (648)
T PRK12267 143 -------------------------------------------------------------------------------- 142 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
.|+|++||+++++
T Consensus 143 -------------------------------------------------------------------~~~c~~cg~~~e~ 155 (648)
T PRK12267 143 -------------------------------------------------------------------GGKCPDCGREVEL 155 (648)
T ss_pred -------------------------------------------------------------------CCcCCCCCCcCeE
Confidence 1579999999999
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHH-HHHhc-CCCceeeccc-CCCcccceeeecCCcccEEEeCCh
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYN-HWLSN-IKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNA 486 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~-~~l~~-l~DW~iSRq~-~WG~piP~~~~~~~~~~~~~~~~~ 486 (674)
+.++|||++++++++++++.++++...+.|+..++.+. +||++ ++|||||||+ .||+|+|.+
T Consensus 156 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~--------------- 220 (648)
T PRK12267 156 VKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFD--------------- 220 (648)
T ss_pred EecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCC---------------
Confidence 99999999999999999999986555567999999888 99986 9999999997 699999941
Q ss_pred hHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcC
Q 005849 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTG 566 (674)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~ 566 (674)
+++|+||||||+++|++..+|+.....+|+++||.|++++|+||++||.....++-+++ +
T Consensus 221 -------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~-~ 280 (648)
T PRK12267 221 -------------------PKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMAL-G 280 (648)
T ss_pred -------------------CCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhC-C
Confidence 25799999999999999999986555679999999999999999997765433332222 3
Q ss_pred CCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--HHHHHHHHHHHH
Q 005849 567 SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAG 643 (674)
Q Consensus 567 ~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~~~~~kl~n~~ 643 (674)
..|++++++||+++ .+|+|||||+||+|+|.|++++||+|++||||+...+ .+|.+|+++.+.. +..++++|+|++
T Consensus 281 ~~~p~~v~~hg~l~-~eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~ 359 (648)
T PRK12267 281 LPLPKKVFAHGWWL-MKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLL 359 (648)
T ss_pred CCCCcEEEecceEE-ECCceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHH
Confidence 55779999999999 5899999999999999999999999999999998777 9999999999976 677889999998
Q ss_pred HHHHhc
Q 005849 644 KFILQN 649 (674)
Q Consensus 644 ~f~~~~ 649 (674)
.+++..
T Consensus 360 ~R~~~~ 365 (648)
T PRK12267 360 NRTVAM 365 (648)
T ss_pred HHHHHH
Confidence 876654
|
|
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=593.90 Aligned_cols=383 Identities=28% Similarity=0.434 Sum_probs=339.6
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
.++|+|++|+|||||+|||||+++++.+|+++||+||+|++|+|+.|+|+||++|+.+ +.++|++|+
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~----A~~~g~tP~--------- 70 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELK----AEKEGITPQ--------- 70 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHH----HHHcCCCHH---------
Confidence 4689999999999999999999999999999999999999999999999999996554 567799998
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhcc
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~ 247 (674)
+++++++..++++++.|+|++| |.| |+++.|.+.+|++|.+|+++|+||.+...+.||+.|++++.|.+|+
T Consensus 71 ---el~d~~~~~~~~~~~~l~IsfD~F~r---Tt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~-- 142 (558)
T COG0143 71 ---ELVDKNHEEFKELFKALNISFDNFIR---TTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE-- 142 (558)
T ss_pred ---HHHHHHHHHHHHHHHHhCCccccccc---CCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchhee--
Confidence 5678899999999999999999 666 9999999999999999999999999999999999999999986653
Q ss_pred CCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcce
Q 005849 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (674)
Q Consensus 248 ~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v 327 (674)
|
T Consensus 143 ---------------------------------------------------------------------------g---- 143 (558)
T COG0143 143 ---------------------------------------------------------------------------G---- 143 (558)
T ss_pred ---------------------------------------------------------------------------c----
Confidence 2
Q ss_pred eeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcc
Q 005849 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (674)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i 407 (674)
.||.|+-+ +..|..||+||.. ..+.....|+|+.||..+
T Consensus 144 -~cp~cg~~----------------~arGD~Ce~Cg~~------------------------~~P~~l~~p~~~i~g~~p 182 (558)
T COG0143 144 -TCPKCGGE----------------DARGDQCENCGRT------------------------LDPTELINPVCVISGATP 182 (558)
T ss_pred -cCCCcCcc----------------ccCcchhhhccCc------------------------CCchhcCCCeeEeeCCCc
Confidence 36666644 3689999999943 456666789999999999
Q ss_pred cceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeec-ccCCCcccceeeecCCcccEEEeCC
Q 005849 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR-QLWWGHRIPVWYIVGKEEEYIVARN 485 (674)
Q Consensus 408 ~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSR-q~~WG~piP~~~~~~~~~~~~~~~~ 485 (674)
+++.+++||++++++.+++++.++++.-.+.|++.++.+.+||+ +|+||+||| ...||+|+|- .
T Consensus 183 ~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~----~---------- 248 (558)
T COG0143 183 EVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPG----D---------- 248 (558)
T ss_pred ccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCC----C----------
Confidence 99999999999999999999999987777899999999999996 599999999 8999999991 1
Q ss_pred hhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCC--CChhhhhhcCCcc----eeEEeehhhhhHHHHHHH
Q 005849 486 ADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPD--VSADDFKKFYPTT----MLETGHDILFFWVARMVM 559 (674)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~--~~~~~f~~~~P~d----~~~~G~Dii~~w~~~~~~ 559 (674)
...|++||||+.+.|++.++... ....+|++|||.| +++.|+||++||-...-+
T Consensus 249 --------------------p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPa 308 (558)
T COG0143 249 --------------------PGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPA 308 (558)
T ss_pred --------------------CCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHH
Confidence 35799999999999999998875 3447899999999 999999999976554444
Q ss_pred HhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--HHHHH
Q 005849 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFT 636 (674)
Q Consensus 560 ~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~~~~ 636 (674)
+-++.....| +++++||+++ .+|+|||||+||+|+|.++++.||+|++||||+...+ .+|.+||++.+.+ +..+.
T Consensus 309 mL~~~~~~lP-~~i~ahg~l~-~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~ 386 (558)
T COG0143 309 MLMAAGLPLP-TRIFAHGFLT-LEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLA 386 (558)
T ss_pred HHHhCCCCCC-CEEEeeeeEE-ECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4344444567 8999999998 8999999999999999999999999999999999999 9999999999988 78899
Q ss_pred HHHHHHHHHHHh
Q 005849 637 NKLWNAGKFILQ 648 (674)
Q Consensus 637 ~kl~n~~~f~~~ 648 (674)
+++.|++++.++
T Consensus 387 n~lgNl~~R~~~ 398 (558)
T COG0143 387 NKLGNLANRTLG 398 (558)
T ss_pred HHHHHHHHHHHH
Confidence 999999887666
|
|
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=611.46 Aligned_cols=381 Identities=24% Similarity=0.367 Sum_probs=322.5
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
++|+|++|||||||.|||||+++++++|+++||+||+|++|++++|||+||++++.++ +++|+++.
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A----~~~g~~p~---------- 67 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKA----EKEGITPE---------- 67 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHH----HHcCCCHH----------
Confidence 5799999999999999999999999999999999999999999999999999976655 44688876
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCC
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
++++++.+.+++++++|||++|+ .+.|++++|.+.++++|.+|+++|+||++.++++|||.|+++|++.+|+
T Consensus 68 --e~~~~~~~~~~~~~~~l~i~~d~--f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~---- 139 (673)
T PRK00133 68 --ELIARYHAEHKRDFAGFGISFDN--YGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVK---- 139 (673)
T ss_pred --HHHHHHHHHHHHHHHHhCCCCCC--CccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchhee----
Confidence 56789999999999999999883 3458999999999999999999999999999999999999999984331
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
| .
T Consensus 140 -------------------------------------------------------------------------g-----~ 141 (673)
T PRK00133 140 -------------------------------------------------------------------------G-----T 141 (673)
T ss_pred -------------------------------------------------------------------------c-----c
Confidence 2 2
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
||.|+.. |.+|..|+.||.+ .++.+...|+|.+||+++++
T Consensus 142 cp~C~~~----------------d~~g~~ce~cg~~------------------------~~~~~l~~~~~~~~g~~~e~ 181 (673)
T PRK00133 142 CPKCGAE----------------DQYGDNCEVCGAT------------------------YSPTELINPKSAISGATPVL 181 (673)
T ss_pred cCCCCCc----------------ccCCchhhhcccc------------------------CChHhhcCCccccCCCcceE
Confidence 7766654 3589999999953 23334566899999999999
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeecccCC-CcccceeeecCCcccEEEeCChh
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLWW-GHRIPVWYIVGKEEEYIVARNAD 487 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSRq~~W-G~piP~~~~~~~~~~~~~~~~~~ 487 (674)
+.++|||++++++++++++.+++ +..| |+..++.+.+||+ +++|||||||+.| |+|+|. .
T Consensus 182 ~~~~~~f~~l~~~~~~l~~~~~~-~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~----~------------ 243 (673)
T PRK00133 182 KESEHFFFKLPRFEEFLKEWITR-SGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPG----A------------ 243 (673)
T ss_pred EecceEEEEHHHHHHHHHHHHhc-CCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECCC----C------------
Confidence 99999999999999999999964 3455 8999999999996 6999999999999 999992 1
Q ss_pred HHHHHHhhhcCCCcceEecCCeeeeeccCCccchhcc-CCCCC-ChhhhhhcCCcc-----eeEEeehhhhhHHHHHHHH
Q 005849 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDV-SADDFKKFYPTT-----MLETGHDILFFWVARMVMM 560 (674)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~-~~~~~-~~~~f~~~~P~d-----~~~~G~Dii~~w~~~~~~~ 560 (674)
+.+|++||||+.++|++.. +|+.. +...|+.||+.+ +++.|+||++||.....++
T Consensus 244 ------------------~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~ 305 (673)
T PRK00133 244 ------------------PGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAM 305 (673)
T ss_pred ------------------CCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHH
Confidence 2579999999999998876 56654 335699999433 8999999999653332222
Q ss_pred hhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-C-CccccCHHHHHH--HHHHH
Q 005849 561 GIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-G-QDLSLSIERLTA--NKAFT 636 (674)
Q Consensus 561 ~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~-~d~~fs~~~l~~--~~~~~ 636 (674)
-++..-.+| +++++||++++ +|+|||||+||+|+|.|++++||+|++||||++.++ . +|.+|+++.+.. +.+++
T Consensus 306 l~a~g~~lP-~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~ 383 (673)
T PRK00133 306 LEGAGYRLP-TNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELV 383 (673)
T ss_pred HHhCCCCCC-CEEeeeccEEe-cCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 222222445 99999999996 999999999999999999999999999999998887 7 899999999865 67789
Q ss_pred HHHHHHHHHHHh
Q 005849 637 NKLWNAGKFILQ 648 (674)
Q Consensus 637 ~kl~n~~~f~~~ 648 (674)
++++|+++++..
T Consensus 384 ~~l~Nl~~R~~~ 395 (673)
T PRK00133 384 GKVVNFASRTAG 395 (673)
T ss_pred HHHHHHHHHHHH
Confidence 999998877654
|
|
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-67 Score=607.33 Aligned_cols=386 Identities=20% Similarity=0.278 Sum_probs=325.5
Q ss_pred CCCCCCCEEEeCCCCCCCCCCCchhhHH-HHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCH
Q 005849 85 FERGSDPFVISMPPPNVTGSLHMGHAMF-VTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSR 163 (674)
Q Consensus 85 ~~~~~~~f~i~~~pP~~nG~LHlGH~~~-~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~ 163 (674)
+..+.++|+|++|+|||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||++++.++ .+.|++|+
T Consensus 12 ~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A----~~~g~~p~---- 83 (801)
T PLN02610 12 PIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKA----LEENCTPK---- 83 (801)
T ss_pred CCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHH----HHcCCCHH----
Confidence 3345678999999999999999999996 67799999999999999999999999999976554 55688877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccch
Q 005849 164 DEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLE 243 (674)
Q Consensus 164 e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~E 243 (674)
++++++++.+++++++|||++| +.+.|++++|.+.||++|.+|+++|+||++.+.++|||.|+++|+|..
T Consensus 84 --------e~~d~~~~~~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~ 153 (801)
T PLN02610 84 --------EICDKYHAIHKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRL 153 (801)
T ss_pred --------HHHHHHHHHHHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHH
Confidence 6678899999999999999988 334499999999999999999999999999999999999999999854
Q ss_pred hhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCC
Q 005849 244 VEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFG 323 (674)
Q Consensus 244 v~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~G 323 (674)
|+ |
T Consensus 154 v~-----------------------------------------------------------------------------G 156 (801)
T PLN02610 154 VE-----------------------------------------------------------------------------G 156 (801)
T ss_pred hc-----------------------------------------------------------------------------C
Confidence 42 2
Q ss_pred CcceeeCCC--CChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccccc
Q 005849 324 TGVLKISPG--HDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQ 401 (674)
Q Consensus 324 TG~v~~~P~--h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~ 401 (674)
.||. |+.+ +.+|..||.||.+ .++.++..|+|.
T Consensus 157 -----~CP~~~C~~~----------------~a~Gd~Ce~Cg~~------------------------~~p~eLi~p~c~ 191 (801)
T PLN02610 157 -----TCPTEGCNYD----------------SARGDQCEKCGKL------------------------LNPTELIDPKCK 191 (801)
T ss_pred -----cCCccccCcc----------------ccccchhhhcccc------------------------CChhhhcCCccc
Confidence 2676 5544 4689999999854 566788899999
Q ss_pred CCCCcccceeeccccccchHHHHHHHHHHHhCCceEechh---HHHHHHHHHh-cCCCceeecccCCCcccceeeecCCc
Q 005849 402 RGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPER---FEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKE 477 (674)
Q Consensus 402 r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~---~~~~~~~~l~-~l~DW~iSRq~~WG~piP~~~~~~~~ 477 (674)
+||.+++.+.++|||++++++++.+++.++++. +.|+. ......+||+ .|+||||||+..||+|+|.- +
T Consensus 192 ~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~--~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~---~-- 264 (801)
T PLN02610 192 VCKNTPRIRDTDHLFLELPLLKDKLVEYINETS--VAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLE---K-- 264 (801)
T ss_pred CCCCcceEEEcceEEEEhHHHHHHHHHHHHhCC--CCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCC---C--
Confidence 999999999999999999999999999998654 33443 3445668995 69999999999999999941 0
Q ss_pred ccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhcc-CCCCCChhhhhhcCCc--c---eeEEeehhhh
Q 005849 478 EEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDVSADDFKKFYPT--T---MLETGHDILF 551 (674)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~-~~~~~~~~~f~~~~P~--d---~~~~G~Dii~ 551 (674)
-+..|++||||+.+.|++.. +|. .+|++|||. | +++.|+||++
T Consensus 265 ---------------------------~~~~v~YVWfDAl~~Yis~~~~~~----~~~~~~W~~~~~~~~~hfiGKDi~~ 313 (801)
T PLN02610 265 ---------------------------YKDKVFYVWFDAPIGYVSITACYT----PEWEKWWKNPENVELYQFMGKDNVP 313 (801)
T ss_pred ---------------------------CCCcEEEEehhhHHHHHHHHhhhh----hHHHHhcCCcccceEEEEEeeecch
Confidence 03579999999999998876 563 358889975 6 8999999999
Q ss_pred hHHHHHHHHhhhhcCC--CCcceeEeeeeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcCCC-CCccccCHH
Q 005849 552 FWVARMVMMGIEFTGS--VPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIE 627 (674)
Q Consensus 552 ~w~~~~~~~~~~~~~~--~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~~~-~~d~~fs~~ 627 (674)
||.....++-++.... .| +++++||++. .+|+|||||+||+|+|.++++. ||+|++||||++..+ .+|.+||++
T Consensus 314 fH~i~wPa~L~a~g~~~~~p-~~i~~~g~l~-~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~ 391 (801)
T PLN02610 314 FHTVMFPSTLLGTGENWTMM-KTISVTEYLN-YEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWA 391 (801)
T ss_pred hHHHHHHHHHHhCCCCcCCC-CEEEeccCEe-cCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHH
Confidence 8755554443333322 44 8999999997 8999999999999999999996 999999999999988 999999999
Q ss_pred HHHH--HHHHHHHHHHHHHHHHhcC
Q 005849 628 RLTA--NKAFTNKLWNAGKFILQNL 650 (674)
Q Consensus 628 ~l~~--~~~~~~kl~n~~~f~~~~~ 650 (674)
.|.. +.++++.|+|++.+++..+
T Consensus 392 ~f~~~~NsdL~n~lGNlv~R~~~~i 416 (801)
T PLN02610 392 DLQAKLNSELLNNLGNFINRVLSFI 416 (801)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 6678999999877766543
|
|
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-67 Score=591.47 Aligned_cols=355 Identities=29% Similarity=0.432 Sum_probs=313.5
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
++|+|++|||||||.|||||+++++.+|+++||+||+|++|.+++|+|+||.+++ +.++++|+++.
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~----~~a~~~g~~~~---------- 66 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQ----RKAEEAGISPQ---------- 66 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHH----HHHHHcCCCHH----------
Confidence 4799999999999999999999999999999999999999999999999999854 44567788875
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCC
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
++++++.+.|+++|++|||.+| ..+.|+++.|.+.++++|.+|+++|++|++.+.|+||+.|+++|++.|+..
T Consensus 67 --~~~~~~~~~~~~~l~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~--- 139 (511)
T PRK11893 67 --ELADRNSAAFKRLWEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIE--- 139 (511)
T ss_pred --HHHHHHHHHHHHHHHHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcC---
Confidence 5678899999999999999888 223499999999999999999999999999999999999999999865410
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
T Consensus 140 -------------------------------------------------------------------------------- 139 (511)
T PRK11893 140 -------------------------------------------------------------------------------- 139 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
+ .|+|+|||+++++
T Consensus 140 --------------------------------------------------------------~----~p~~~~~~~~~~~ 153 (511)
T PRK11893 140 --------------------------------------------------------------D----GYRCPPTGAPVEW 153 (511)
T ss_pred --------------------------------------------------------------C----CCCCCCCCCcceE
Confidence 0 1789999999999
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeec-ccCCCcccceeeecCCcccEEEeCChh
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR-QLWWGHRIPVWYIVGKEEEYIVARNAD 487 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSR-q~~WG~piP~~~~~~~~~~~~~~~~~~ 487 (674)
+.++|||++++.+++++.+.++++...+.|+..++.+.+|++ +++|||||| |+.||+|+|.+
T Consensus 154 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~---------------- 217 (511)
T PRK11893 154 VEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGD---------------- 217 (511)
T ss_pred EecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCC----------------
Confidence 999999999999999999999764444679999999999997 599999999 99999999941
Q ss_pred HHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCCh---hhhhhcCCcceeEEeehhhhhHHHHHHHHhhhh
Q 005849 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA---DDFKKFYPTTMLETGHDILFFWVARMVMMGIEF 564 (674)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~---~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~ 564 (674)
+.+++||||||+++|++..++|.+.. ++|.++||.|++++|+||+++|....+++..++
T Consensus 218 ------------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~ 279 (511)
T PRK11893 218 ------------------PKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAA 279 (511)
T ss_pred ------------------CCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEecccccccchhHHHHHHHhC
Confidence 25799999999999999988876532 468999999999999999999988887777776
Q ss_pred cCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--HHHHHHHHHH
Q 005849 565 TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWN 641 (674)
Q Consensus 565 ~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~~~~~kl~n 641 (674)
..+.| +++++||+++ .+|+|||||+||+|++.|++++||+|++||||++.++ ++|++|+++.+.. ...+.+.++|
T Consensus 280 ~~~~p-~~~~~~g~v~-~~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n 357 (511)
T PRK11893 280 GLPLP-KRVFAHGFLT-LDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGN 357 (511)
T ss_pred CCCCC-CEEEeeccEE-ECCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 66778 9999999998 5999999999999999999999999999999999866 9999999999976 4457788888
Q ss_pred HHHHHH
Q 005849 642 AGKFIL 647 (674)
Q Consensus 642 ~~~f~~ 647 (674)
++.++.
T Consensus 358 ~~~r~~ 363 (511)
T PRK11893 358 LAQRTL 363 (511)
T ss_pred HHHHHH
Confidence 876443
|
|
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=544.98 Aligned_cols=311 Identities=39% Similarity=0.741 Sum_probs=285.4
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
+|+|++|||||||.|||||+++++++|+++||+||+|++|.+++|||+||+|++.++++.. +.+.....+++|.+.|
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~---~~~~~~~~~~~~~~~~ 77 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG---GRKKKTIWIEEFREDP 77 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhc---CcccccccHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999988877654 3344445578999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (674)
+++++++.+.|+++|++|||++||++.+.|++++|.+.++++|.+|+++|+||++.++|
T Consensus 78 ~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v--------------------- 136 (312)
T cd00668 78 KEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV--------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee---------------------
Confidence 99999999999999999999999999999999999999999999999999999997654
Q ss_pred CeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeC
Q 005849 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (674)
Q Consensus 251 ~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~ 330 (674)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce
Q 005849 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (674)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~ 410 (674)
+
T Consensus 137 -------------------------------------------------------------------------------~ 137 (312)
T cd00668 137 -------------------------------------------------------------------------------R 137 (312)
T ss_pred -------------------------------------------------------------------------------E
Confidence 2
Q ss_pred eeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHH
Q 005849 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL 490 (674)
Q Consensus 411 ~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~ 490 (674)
..+|||++++++++++++.++++ ++.|+..++++.+||++..|||||||++||+|+|
T Consensus 138 ~~~~~f~~~~~l~~~~~~~~~~~--~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P--------------------- 194 (312)
T cd00668 138 ITEQWFFDMPKFKEKLLKALRRG--KIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP--------------------- 194 (312)
T ss_pred eeeeEEEEcHHHHHHHHHHHhcC--CcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC---------------------
Confidence 35689999999999999999854 4899999999999999877999999999999999
Q ss_pred HHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCc
Q 005849 491 EKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF 570 (674)
Q Consensus 491 ~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf 570 (674)
++|+|+||||+++|+++.+++.+. ..|+++||.|++++|+||+++|+..+++++.++.+..|+
T Consensus 195 ----------------~~~i~~Wfds~~~~~~~~~~~~~~-~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~ 257 (312)
T cd00668 195 ----------------EDVFDVWFDSGIGPLGSLGYPEEK-EWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPP 257 (312)
T ss_pred ----------------cccccchhhccHHHHHHcCCCccc-hhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCc
Confidence 379999999999999999888764 578999999999999999999999999999888877788
Q ss_pred ceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCcccc
Q 005849 571 SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (674)
Q Consensus 571 ~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~f 624 (674)
+++++||++++.+|+|||||+||+|+++|++++||+|++||||++.++ .+|.+|
T Consensus 258 ~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 258 KNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred ceeEECcEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 999999999977779999999999999999999999999999999886 888876
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=572.26 Aligned_cols=356 Identities=24% Similarity=0.347 Sum_probs=304.0
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
+++|+|++|||||||.|||||+++++++|+++||+||+|++|++++|||+||++|+.. ++++|+++.
T Consensus 68 ~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~----A~~~g~~p~--------- 134 (616)
T PLN02224 68 ADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATS----AAANGRNPP--------- 134 (616)
T ss_pred CCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHH----HHHcCCChH---------
Confidence 6789999999999999999999999999999999999999999999999999996544 566788765
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
++++++.+.+++++++|||++| ..+.|++|.|.+.|+++|.+|+++|+||++.++++|||+|++.+.+.|+..
T Consensus 135 ---e~~~~~~~~~~~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~-- 207 (616)
T PLN02224 135 ---EHCDIISQSYRTLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLE-- 207 (616)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcC--
Confidence 4567788889999999999666 556699999999999999999999999999999999999998887644310
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
T Consensus 208 -------------------------------------------------------------------------------- 207 (616)
T PLN02224 208 -------------------------------------------------------------------------------- 207 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
.+.|..||.+++
T Consensus 208 --------------------------------------------------------------------~~~~~~~~~~~~ 219 (616)
T PLN02224 208 --------------------------------------------------------------------NNCCPVHQMPCV 219 (616)
T ss_pred --------------------------------------------------------------------CCCCCCCCCcce
Confidence 023667899999
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeeccc-CCCcccceeeecCCcccEEEeCCh
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNA 486 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSRq~-~WG~piP~~~~~~~~~~~~~~~~~ 486 (674)
++.+++||++++++++.+.+.++++.-.+.|+..++.+.+||+ +|+||||||++ .||+|+|. +
T Consensus 220 ~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~----~----------- 284 (616)
T PLN02224 220 ARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPD----D----------- 284 (616)
T ss_pred EEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCC----C-----------
Confidence 9999999999999999999999865545679988899999996 59999999986 79999993 0
Q ss_pred hHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCC---hhhhhhcCCcceeEEeehhhhhHHHHHHHHhhh
Q 005849 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS---ADDFKKFYPTTMLETGHDILFFWVARMVMMGIE 563 (674)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~---~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~ 563 (674)
+.+|++||||+.+.|++..++.... ...|..+||.|+++.|+||++||.....++-++
T Consensus 285 -------------------~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~ 345 (616)
T PLN02224 285 -------------------DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMS 345 (616)
T ss_pred -------------------CCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHH
Confidence 2589999999999999988775432 112556899999999999999755444443333
Q ss_pred hcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--HHHHHHHHH
Q 005849 564 FTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLW 640 (674)
Q Consensus 564 ~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~~~~~kl~ 640 (674)
..-.+| +++++||++. .+|+|||||+||+|+|.|++++||+|++||||++..+ .+|.+|+++.+.. +.++++.++
T Consensus 346 ~g~~~P-~~i~~~g~l~-~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lg 423 (616)
T PLN02224 346 AGLELP-KMVFGHGFLT-KDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIG 423 (616)
T ss_pred CCCCCC-cEEEecccEe-cCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 333456 8999999975 8999999999999999999999999999999999888 9999999999765 677899999
Q ss_pred HHHHHHHh
Q 005849 641 NAGKFILQ 648 (674)
Q Consensus 641 n~~~f~~~ 648 (674)
|++.+++.
T Consensus 424 Nll~R~l~ 431 (616)
T PLN02224 424 NLLNRTLG 431 (616)
T ss_pred HHHHHHHH
Confidence 99877654
|
|
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-66 Score=561.17 Aligned_cols=378 Identities=29% Similarity=0.471 Sum_probs=305.5
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~ 171 (674)
|+|++|+|||||.|||||+++++.+|+++||+||+|++|+++.|+|+||++++ ..+.++|++|+
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~----~~A~~~g~~p~------------ 64 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIE----TAAEKQGIDPE------------ 64 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHH----HHHHHTTS-HH------------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHH----HHHHHcCCCHH------------
Confidence 78999999999999999999999999999999999999999999999999954 45567799987
Q ss_pred HHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCC
Q 005849 172 EWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (674)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (674)
++++++++.|+++++++||++| |.| |.++.|.++|+++|.+|+++|+||+++..++||+.|+++++|.+|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~I~~D~F~r---Tt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~----- 136 (391)
T PF09334_consen 65 EFCDKYSAKFKELLEALNISYDRFIR---TTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVE----- 136 (391)
T ss_dssp HHHHHHHHHHHHHHHHTT---SEEEE---TTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGET-----
T ss_pred HHHHHHHHHHHHHHHHcCCCCcceeC---CCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceee-----
Confidence 6778999999999999999999 554 8999999999999999999999999999999999999999987763
Q ss_pred CeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeC
Q 005849 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (674)
Q Consensus 251 ~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~ 330 (674)
..|
T Consensus 137 -----------------------------------------------------------------------------g~C 139 (391)
T PF09334_consen 137 -----------------------------------------------------------------------------GTC 139 (391)
T ss_dssp -----------------------------------------------------------------------------CEE
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 126
Q ss_pred CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce
Q 005849 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (674)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~ 410 (674)
|.|+.+ +..|..||+||.. .++.+...|+|..||++++.+
T Consensus 140 P~C~~~----------------~a~g~~Ce~cG~~------------------------~~~~~l~~p~~~~~g~~~~~r 179 (391)
T PF09334_consen 140 PYCGSD----------------KARGDQCENCGRP------------------------LEPEELINPVCKICGSPPEVR 179 (391)
T ss_dssp TTT--S----------------SCTTTEETTTSSB------------------------EECCCSECEEETTTS-B-EEE
T ss_pred cCcCcc----------------ccCCCcccCCCCC------------------------cccccccCCccccccccCccc
Confidence 655532 3688899999843 566778899999999999999
Q ss_pred eeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhc-CCCceeecccCCCcccceeeecCCcccEEEeCChhHH
Q 005849 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN-IKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (674)
Q Consensus 411 ~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~ 489 (674)
.+++||++++++++.+.+.+++.+.. .|+..++.+.+||++ ++||+|||...||+|+|-
T Consensus 180 ~e~~~ff~L~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~------------------- 239 (391)
T PF09334_consen 180 EEENYFFKLSKFRDQLREWLESNPDF-PPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPG------------------- 239 (391)
T ss_dssp EEEEEEE-GGGGHHHHHHHHHHSTTS-SHHHHHHHHHHHHHT----EE-ECTTSSSEEETT-------------------
T ss_pred cceEEEEehHHhHHHHHHHHhcCCCC-CChhHHHHHHHHhhcccCceeeecCCCCcceeec-------------------
Confidence 99999999999999999999865433 677888999999965 999999999999999991
Q ss_pred HHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCC---CChhhhhhcCC-----cceeEEeehhhhhHHHHHHHHh
Q 005849 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPD---VSADDFKKFYP-----TTMLETGHDILFFWVARMVMMG 561 (674)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~---~~~~~f~~~~P-----~d~~~~G~Dii~~w~~~~~~~~ 561 (674)
.+..|++||||+.+.|++..+... .....|+++|+ .-+++.|+||++||.....++.
T Consensus 240 ---------------~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l 304 (391)
T PF09334_consen 240 ---------------DPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAML 304 (391)
T ss_dssp ---------------EEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHH
T ss_pred ---------------cCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHH
Confidence 135799999999999999888775 23467888882 2299999999998766666555
Q ss_pred hhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--HHHHHHH
Q 005849 562 IEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNK 638 (674)
Q Consensus 562 ~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~~~~~k 638 (674)
++..-.+| +++++||+++ .+|+|||||+||+|||.|++++||+|++||||++..+ .+|.+|+++.+.+ +..+.+.
T Consensus 305 ~a~~~~lP-~~i~~~~~~~-~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~ 382 (391)
T PF09334_consen 305 LAAGLPLP-RRIVVHGFLT-LDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANT 382 (391)
T ss_dssp HHCTB----SEEEEE--EE-ETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCC
T ss_pred hcccCCCC-CEEEeeeeEE-ECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 55444566 8999999998 8999999999999999999999999999999999888 9999999999977 4567899
Q ss_pred HHHHHHHHH
Q 005849 639 LWNAGKFIL 647 (674)
Q Consensus 639 l~n~~~f~~ 647 (674)
+.|++.+++
T Consensus 383 ~gNl~~R~~ 391 (391)
T PF09334_consen 383 LGNLVNRVL 391 (391)
T ss_dssp HHHHHHHHH
T ss_pred hhhHHhccC
Confidence 999988764
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-60 Score=504.98 Aligned_cols=313 Identities=29% Similarity=0.445 Sum_probs=272.8
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
+|+|++|||||||.|||||+++++++|+++||+||+|++|.+++|+|+||++++.+ +.++|++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~----a~~~g~~~~----------- 65 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQK----AEEEGVTPQ----------- 65 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHH----HHHcCCCHH-----------
Confidence 58999999999999999999999999999999999999999999999999996655 455688776
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (674)
++++.+.+.|++++++|||.+| ..+.|.++.|.+.++++|++|.++|++|++...++|||.|+++|+
T Consensus 66 -e~~~~~~~~~~~~l~~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~---------- 132 (319)
T cd00814 66 -ELCDKYHEIFKDLFKWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP---------- 132 (319)
T ss_pred -HHHHHHHHHHHHHHHHcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee----------
Confidence 5678899999999999999887 234488999999999999999999999999999999999887766
Q ss_pred CeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeC
Q 005849 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (674)
Q Consensus 251 ~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~ 330 (674)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce
Q 005849 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (674)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~ 410 (674)
+++
T Consensus 133 -----------------------------------------------------------------------------e~~ 135 (319)
T cd00814 133 -----------------------------------------------------------------------------EWR 135 (319)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 234
Q ss_pred eeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhc-CCCceeeccc-CCCcccceeeecCCcccEEEeCChhH
Q 005849 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN-IKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNADE 488 (674)
Q Consensus 411 ~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~iSRq~-~WG~piP~~~~~~~~~~~~~~~~~~~ 488 (674)
.++|||++++++++.+++.++++...+.|+..++.+.+||++ ++|||||||. .||+|+|. .
T Consensus 136 ~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~----~------------- 198 (319)
T cd00814 136 EEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPL----D------------- 198 (319)
T ss_pred eeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCC----C-------------
Confidence 578999999999999999998776668999999999999986 9999999999 99999994 1
Q ss_pred HHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCCh---hhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhc
Q 005849 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA---DDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT 565 (674)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~---~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~ 565 (674)
+.+|++||||+.+.|++..+++.... ..|...+|.++++.|+||+++|.....++..++
T Consensus 199 -----------------~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~- 260 (319)
T cd00814 199 -----------------PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGA- 260 (319)
T ss_pred -----------------CCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhC-
Confidence 25799999999999998888765432 246677899999999999998755444433333
Q ss_pred CCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCcccc
Q 005849 566 GSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (674)
Q Consensus 566 ~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~f 624 (674)
+..|++.+++||+++ .+|+|||||+||+|+|.|++++||+|++||||++..+ .+|.+|
T Consensus 261 ~~~~~~~~~~~~~~~-~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 261 GLPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred CCCCCcEeeeeeeEE-ECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 345569999999998 6899999999999999999999999999999999988 888887
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-56 Score=477.37 Aligned_cols=297 Identities=30% Similarity=0.505 Sum_probs=254.5
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
+|+|++|||||||.+||||+++++++|+++||+|++|++|.+++|+|+||+|++..+ ++.|.++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a----~~~g~~~------------ 64 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAA----IKIGRDP------------ 64 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHH----HHcCCCH------------
Confidence 589999999999999999999999999999999999999999999999999965544 4457654
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (674)
.++++++.+.+++++++|||++||.+.+.|++|+|.+.++++|.+|+++|+||++..+|+||
T Consensus 65 ~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~------------------ 126 (314)
T cd00812 65 EDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC------------------ 126 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee------------------
Confidence 37889999999999999999999998889999999999999999999999999999999886
Q ss_pred CeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeC
Q 005849 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (674)
Q Consensus 251 ~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~ 330 (674)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce
Q 005849 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (674)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~ 410 (674)
+
T Consensus 127 -------------------------------------------------------------------------------~ 127 (314)
T cd00812 127 -------------------------------------------------------------------------------K 127 (314)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred eeccccccc--hHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhH
Q 005849 411 VSKQWFVTM--EPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADE 488 (674)
Q Consensus 411 ~~~qwfi~~--~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~ 488 (674)
.++|||+++ +++++++.+.+++ +.+.|+..++.+.+||+ ||||+.||+|+|+
T Consensus 128 ~~~~~f~~l~~~~~~~~l~~~l~~--~~~~p~~~~~~~~~~l~------isR~~~wGipvP~------------------ 181 (314)
T cd00812 128 LLDQWFLKYSETEWKEKLLKDLEK--LDGWPEEVRAMQENWIG------CSRQRYWGTPIPW------------------ 181 (314)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHh--cCcCCHHHHHHHHHHhe------eeeecCCcCCcCc------------------
Confidence 257999999 9999999999985 34799999999999997 9999999999994
Q ss_pred HHHHHhhhcCCCcceEecCCeeeeeccCCccc---hhccCCCCC-------ChhhhhhcCCcceeEEeehhhhhHHHHHH
Q 005849 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWP---FSTLGWPDV-------SADDFKKFYPTTMLETGHDILFFWVARMV 558 (674)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~---~~~~~~~~~-------~~~~f~~~~P~d~~~~G~Dii~~w~~~~~ 558 (674)
++|+|+||||.+.+ ......... .++.|++|||.|+++.|+||+++|...++
T Consensus 182 ------------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~ 243 (314)
T cd00812 182 ------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSR 243 (314)
T ss_pred ------------------ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHH
Confidence 36899999998633 222221111 23568999999999999999998854343
Q ss_pred HHhhhhc--C---CCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCH
Q 005849 559 MMGIEFT--G---SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSI 626 (674)
Q Consensus 559 ~~~~~~~--~---~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~ 626 (674)
+....+. + ..|++++.+||+++ .+|+|||||+||+|+++|++++||+|++||++++.++ .+.+|++
T Consensus 244 ~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~~f~~ 314 (314)
T cd00812 244 FNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDADFDW 314 (314)
T ss_pred HHHHHHcCcccccccCcHHheecceEe-cCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCCCCCC
Confidence 3332222 2 13558999999998 7999999999999999999999999999999999888 8888863
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=444.65 Aligned_cols=358 Identities=28% Similarity=0.469 Sum_probs=310.6
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHH
Q 005849 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFT 167 (674)
Q Consensus 88 ~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~ 167 (674)
++++|++++|.-|+|..+||||+++.+++|+++||+|++|..|++..|+|+||+.||.+ ++..|..|.
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqta----aatnG~~P~-------- 104 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTA----AATNGRNPP-------- 104 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhh----HhhcCCChH--------
Confidence 35689999999999999999999999999999999999999999999999999996544 566788887
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhc
Q 005849 168 KRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 246 (674)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~ 246 (674)
+.++...+.+.+..+.+||.++ |-| |+||.|+..|++++..+.++|+||++.+..+||.+|+|+..+.+|.-
T Consensus 105 ----e~cDr~s~~f~qL~k~~gi~yt~FIR---TTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k 177 (578)
T KOG0436|consen 105 ----ELCDRISQSFRQLWKDAGIAYTKFIR---TTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLK 177 (578)
T ss_pred ----HHHhhhhHHHHHHHHHhCcchhheee---cCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhc
Confidence 3456777888888999999988 544 99999999999999999999999999999999999999999877742
Q ss_pred cCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcc
Q 005849 247 SEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGV 326 (674)
Q Consensus 247 ~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~ 326 (674)
..
T Consensus 178 ~p------------------------------------------------------------------------------ 179 (578)
T KOG0436|consen 178 NP------------------------------------------------------------------------------ 179 (578)
T ss_pred CC------------------------------------------------------------------------------
Confidence 11
Q ss_pred eeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCc
Q 005849 327 LKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 406 (674)
Q Consensus 327 v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 406 (674)
|| .| .++.--+|++
T Consensus 180 ---~~-----------------------~g----------------------------------------k~vsmEsg~~ 193 (578)
T KOG0436|consen 180 ---CP-----------------------PG----------------------------------------KVVSMESGNP 193 (578)
T ss_pred ---CC-----------------------CC----------------------------------------ceeeeccCCc
Confidence 00 00 0122237889
Q ss_pred ccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeec--c-cCCCcccceeeecCCcccEEE
Q 005849 407 IEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR--Q-LWWGHRIPVWYIVGKEEEYIV 482 (674)
Q Consensus 407 i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSR--q-~~WG~piP~~~~~~~~~~~~~ 482 (674)
++++..+.+|++++++++.+.+.++.+.--+.|+..+.....||+ +++|..||| + ..||+|+|- |
T Consensus 194 vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~-------d---- 262 (578)
T KOG0436|consen 194 VVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPG-------D---- 262 (578)
T ss_pred eeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCC-------C----
Confidence 999999999999999999999999987777899999999999995 799999999 3 699999992 1
Q ss_pred eCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCC---ChhhhhhcCCcceeEEeehhhhh----HHH
Q 005849 483 ARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV---SADDFKKFYPTTMLETGHDILFF----WVA 555 (674)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~---~~~~f~~~~P~d~~~~G~Dii~~----w~~ 555 (674)
++++++||||+.+.|++.+|+|.+ .+..+.-+||+.++++|+||++| |.+
T Consensus 263 -----------------------dsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPa 319 (578)
T KOG0436|consen 263 -----------------------DSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPA 319 (578)
T ss_pred -----------------------CcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHH
Confidence 468999999999999999999853 24677889999999999999986 566
Q ss_pred HHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--H
Q 005849 556 RMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--N 632 (674)
Q Consensus 556 ~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~ 632 (674)
.+++.++ .+| +.|++||+.+ .+|.|||||+||+|+|.+++++||+|++||||+.... +.|-+|+++.+.. +
T Consensus 320 fLmaAGl----plP-~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n 393 (578)
T KOG0436|consen 320 FLMAAGL----PLP-KMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVN 393 (578)
T ss_pred HHHhcCC----CCc-cEEEEeeeee-ecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHH
Confidence 5555444 335 8999999998 8999999999999999999999999999999999887 9999999999977 5
Q ss_pred HHHHHHHHHHHHHHHh
Q 005849 633 KAFTNKLWNAGKFILQ 648 (674)
Q Consensus 633 ~~~~~kl~n~~~f~~~ 648 (674)
..+.++|.|+++++.+
T Consensus 394 ~~La~~lG~LlnRc~g 409 (578)
T KOG0436|consen 394 AHLANTLGNLLNRCLG 409 (578)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6788999999999887
|
|
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=378.06 Aligned_cols=311 Identities=25% Similarity=0.323 Sum_probs=234.7
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccc
Q 005849 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE 160 (674)
Q Consensus 81 f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~ 160 (674)
|++... +..++++|. |+|+|.+||||+++++..|+++||+|++||+|+++.|+|++|.++ .+.+++.|+++.
T Consensus 16 f~p~~~-~~v~~yvcg--Ptvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki----~~~A~~~g~~~~- 87 (463)
T PRK00260 16 FKPLEP-GKVKMYVCG--PTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKI----IKRANEEGESIK- 87 (463)
T ss_pred cccCCC-CcceEEEeC--CccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHH----HHHHHHcCCCHH-
Confidence 554332 334555554 567799999999999999999999999999999999999999874 445567787765
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCccc
Q 005849 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGA-SCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAV 239 (674)
Q Consensus 161 l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi-~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~l 239 (674)
++++++.+.+++++++||| ..||.... | +|...+++++++|+++|++|++..+|+||+..-
T Consensus 88 -----------e~~~~~~~~f~~~~~~Lgi~~~d~~~r~-t---~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~--- 149 (463)
T PRK00260 88 -----------ELTERYIAAFHEDMDALNVLPPDIEPRA-T---EHIPEIIELIERLIDKGHAYEADGDVYFDVRKF--- 149 (463)
T ss_pred -----------HHHHHHHHHHHHHHHHcCCCCCCccccc-c---ccHHHHHHHHHHHHHCCCEEEecCeEEEecccc---
Confidence 6678999999999999999 56754322 2 478889999999999999999999999998631
Q ss_pred ccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeeccccc
Q 005849 240 SDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVD 319 (674)
Q Consensus 240 sd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~ 319 (674)
+.|.+|.+.....-. .|.. |+
T Consensus 150 --------------------------------------------------~~yg~ls~~~~~~~~-~~~~--------~~ 170 (463)
T PRK00260 150 --------------------------------------------------PDYGKLSGRNLDELQ-AGAR--------VE 170 (463)
T ss_pred --------------------------------------------------cccccCCCCCHHHHh-ccCc--------CC
Confidence 112222221110000 0000 00
Q ss_pred ccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccc
Q 005849 320 KEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (674)
Q Consensus 320 ~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (674)
.+ .--+++.||.++++..
T Consensus 171 ~~--------~~K~~~~DF~Lwk~~~------------------------------------------------------ 188 (463)
T PRK00260 171 VA--------EEKRDPLDFALWKAAK------------------------------------------------------ 188 (463)
T ss_pred cc--------cCCCCccccceecCCC------------------------------------------------------
Confidence 00 0024555666654311
Q ss_pred ccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCccc
Q 005849 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (674)
Q Consensus 400 ~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~ 479 (674)
+|+ . -| ...||.--|-|++++.
T Consensus 189 ---~~~-----------------------------~-------------------~w----~s~~g~grpgWhiecs--- 210 (463)
T PRK00260 189 ---PGE-----------------------------P-------------------SW----ESPWGKGRPGWHIECS--- 210 (463)
T ss_pred ---CCC-----------------------------C-------------------CC----CCCCCCCCCChhHHHH---
Confidence 010 0 12 3368988999999761
Q ss_pred EEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHH
Q 005849 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVM 559 (674)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~ 559 (674)
.+-...+| -|.|++.+|.|++|+|+.++++
T Consensus 211 --------------------------------------am~~~~lg------------~~~Dih~gG~DlifpHh~neia 240 (463)
T PRK00260 211 --------------------------------------AMSTKYLG------------ETFDIHGGGADLIFPHHENEIA 240 (463)
T ss_pred --------------------------------------HHHHHhcC------------CCcceecCccccCCCchHhHHH
Confidence 01001111 2579999999999999999999
Q ss_pred HhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHH
Q 005849 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKL 639 (674)
Q Consensus 560 ~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl 639 (674)
.+.++.+ .||.++|+|+.+++.+|+|||||+||+|++.|++++||+|++||++++++++++++|+.+.+..+++.++++
T Consensus 241 qs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~rl 319 (463)
T PRK00260 241 QSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERL 319 (463)
T ss_pred HHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHHH
Confidence 9999888 799999999888889999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHH
Q 005849 640 WNAGKFIL 647 (674)
Q Consensus 640 ~n~~~f~~ 647 (674)
||+++++.
T Consensus 320 ~~~~~~~~ 327 (463)
T PRK00260 320 YNALAETA 327 (463)
T ss_pred HHHHHHhh
Confidence 99998864
|
|
| >KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=356.77 Aligned_cols=387 Identities=20% Similarity=0.296 Sum_probs=318.4
Q ss_pred CCCCCEEEeCCCCCCCCCCCchhhHHH-HHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHH
Q 005849 87 RGSDPFVISMPPPNVTGSLHMGHAMFV-TLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDE 165 (674)
Q Consensus 87 ~~~~~f~i~~~pP~~nG~LHlGH~~~~-~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~ 165 (674)
.++...+|+..-||+|..+|+|++-+. ..+|++|||.+.+|++.+++.|+|++|.++|.+ +.++|.+|+++
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetk----aleeg~tP~el---- 82 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETK----ALEEGLTPQEL---- 82 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHH----HHHccCCHHHH----
Confidence 356678999999999999999999965 569999999999999999999999999996544 56789999854
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchh
Q 005849 166 FTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244 (674)
Q Consensus 166 f~~~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev 244 (674)
+++++...+.....++|++| +.+ |..+...+.+|.+|.+|+++|++-+..-.+.+|+.|++.|+|-.|
T Consensus 83 --------cdKyh~ihk~vy~Wf~IdfD~fgr---tTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~v 151 (567)
T KOG1247|consen 83 --------CDKYHGIHKVVYDWFKIDFDEFGR---TTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFV 151 (567)
T ss_pred --------HHhcchhHHHHHHhhcccccccCc---ccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhh
Confidence 47888888999999999999 665 888889999999999999999999999999999999999998555
Q ss_pred hccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCC
Q 005849 245 EYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGT 324 (674)
Q Consensus 245 ~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GT 324 (674)
+
T Consensus 152 e------------------------------------------------------------------------------- 152 (567)
T KOG1247|consen 152 E------------------------------------------------------------------------------- 152 (567)
T ss_pred h-------------------------------------------------------------------------------
Confidence 3
Q ss_pred cceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCC
Q 005849 325 GVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGG 404 (674)
Q Consensus 325 G~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~ 404 (674)
..||.|+-+ |..|.+|++||..-+ ..+...|.|..|.
T Consensus 153 ---g~cp~C~yd----------------~ARGDqcd~cG~l~N------------------------~~el~~pkc~ic~ 189 (567)
T KOG1247|consen 153 ---GKCPFCGYD----------------DARGDQCDKCGKLVN------------------------AAELKIPKCKICQ 189 (567)
T ss_pred ---ccCCCCCCc----------------cccchhhhhhhhhcC------------------------HHHhcCcchheec
Confidence 126767665 468999999996522 2355678999999
Q ss_pred CcccceeeccccccchHHHHHHHHHHHhCCce-EechhHHHHHHHHH-hcCCCceeecccCCCcccceeeecCCcccEEE
Q 005849 405 EVIEPLVSKQWFVTMEPLAEKALHAVEKGELT-IMPERFEKIYNHWL-SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIV 482 (674)
Q Consensus 405 ~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~-~~P~~~~~~~~~~l-~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~ 482 (674)
...+++.+.+.|++++++++++.+.++...+. -+..+.+.+...|| ++++..||||..-||+|+|. +.|
T Consensus 190 ~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPl-------e~f-- 260 (567)
T KOG1247|consen 190 AGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPL-------EKF-- 260 (567)
T ss_pred cCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcCh-------hhh--
Confidence 99999999999999999999999998753211 24567889999999 57999999999999999995 111
Q ss_pred eCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcC--Ccc---eeEEeehhhhhHHHHH
Q 005849 483 ARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY--PTT---MLETGHDILFFWVARM 557 (674)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~--P~d---~~~~G~Dii~~w~~~~ 557 (674)
+..|++||||+.+.|.+...... ++|++|| |.. +.+.|+|++-||-..+
T Consensus 261 -----------------------k~KVfYVWFDA~IGYlsit~~yt---~ew~kWwknpE~v~LyqFmgKDNVpFHtviF 314 (567)
T KOG1247|consen 261 -----------------------KDKVFYVWFDAPIGYLSITKNYT---DEWEKWWKNPENVELYQFMGKDNVPFHTVIF 314 (567)
T ss_pred -----------------------cccEEEEEEcCcceEEEeehhhh---HHHHHHhcCHhhhhHHHHhccCCCcceeeec
Confidence 24699999999988876543222 6899998 432 5578999999986655
Q ss_pred HHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHh-hhChhHHHHHHhcCCC-CCccccCHHHHHH--HH
Q 005849 558 VMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK-EFGADALRFTISLGTA-GQDLSLSIERLTA--NK 633 (674)
Q Consensus 558 ~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~-~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~ 633 (674)
-...++...+.+.-+-+.---+++-+..|||||+|..|-..++.+ ..++++.||||++.+| .+|..||++++.. +.
T Consensus 315 P~s~lgt~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~ns 394 (567)
T KOG1247|consen 315 PCSQLGTEENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNS 394 (567)
T ss_pred chhhhcCCCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhH
Confidence 555555555666444444444556889999999999999999887 4899999999999999 8999999999876 88
Q ss_pred HHHHHHHHHHHHHHhc
Q 005849 634 AFTNKLWNAGKFILQN 649 (674)
Q Consensus 634 ~~~~kl~n~~~f~~~~ 649 (674)
.+++.|.|++++++..
T Consensus 395 eLl~NLGNFvNR~l~f 410 (567)
T KOG1247|consen 395 ELLNNLGNFVNRVLKF 410 (567)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998776653
|
|
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=364.70 Aligned_cols=313 Identities=21% Similarity=0.250 Sum_probs=233.8
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccc
Q 005849 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE 160 (674)
Q Consensus 81 f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~ 160 (674)
|.+.. .++.++++|.| ||+|.+||||+|+++..|+++||+|++||+|.++.|+|++|.++ .+.++++|+++.
T Consensus 14 f~p~~-~~~v~~yvcgp--tvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkI----i~~A~~~g~~~~- 85 (465)
T TIGR00435 14 FEPLV-QGKVKMYVCGP--TVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKI----IKRARENGESVY- 85 (465)
T ss_pred cccCC-CCcceEEEecC--ccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHH----HHHHHHcCCCHH-
Confidence 55433 23445666555 77789999999999999999999999999999999999999874 445677898886
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc-cceeccCCCCccc
Q 005849 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPNLQTAV 239 (674)
Q Consensus 161 l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~-~~v~w~p~~~t~l 239 (674)
++++.+.+.+.+++++|||.+|......| .|...+++++++|.++|++|+.. ..|+||+.+-.
T Consensus 86 -----------e~a~~~~~~f~~dl~~LgI~~d~~~~raT---~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~-- 149 (465)
T TIGR00435 86 -----------EVSERFIEAYFEDMKALNVLPPDLEPRAT---EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK-- 149 (465)
T ss_pred -----------HHHHHHHHHHHHHHHHhCCCCCcCCcccc---ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc--
Confidence 45688999999999999999994322222 68899999999999999999998 99999976421
Q ss_pred ccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeeccccc
Q 005849 240 SDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVD 319 (674)
Q Consensus 240 sd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~ 319 (674)
. |..|.|+.+..
T Consensus 150 -----~----------------------------------------------yG~ls~~~~~~----------------- 161 (465)
T TIGR00435 150 -----D----------------------------------------------YGKLSKQDLDQ----------------- 161 (465)
T ss_pred -----h----------------------------------------------hccCCCCCHHH-----------------
Confidence 1 11111110000
Q ss_pred ccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccc
Q 005849 320 KEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (674)
Q Consensus 320 ~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (674)
...|.++-...--.+|.||.
T Consensus 162 ~~~~~~~~~~~~K~~p~DF~------------------------------------------------------------ 181 (465)
T TIGR00435 162 LEAGARVDVDEAKRNKLDFV------------------------------------------------------------ 181 (465)
T ss_pred HhcccccCcccccCCCCCce------------------------------------------------------------
Confidence 00000000000012223333
Q ss_pred ccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCccc
Q 005849 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (674)
Q Consensus 400 ~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~ 479 (674)
+|++.++= ++ .| ...||..-|-|+++|.
T Consensus 182 Lwk~~~~~--------------------------~~-------------------~w----~spwG~grpgWhiecs--- 209 (465)
T TIGR00435 182 LWKSSKEG--------------------------EP-------------------KW----DSPWGKGRPGWHIECS--- 209 (465)
T ss_pred eeCCCCCC--------------------------CC-------------------CC----cCCCCCCCCCcHhHHH---
Confidence 33332211 11 12 3469999999999861
Q ss_pred EEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHH
Q 005849 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVM 559 (674)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~ 559 (674)
.+....+| .|.|++.+|.|++++|..+.++
T Consensus 210 --------------------------------------am~~~~lg------------~~~Dih~gG~Dl~fpHhene~a 239 (465)
T TIGR00435 210 --------------------------------------AMNDKYLG------------DQIDIHGGGVDLIFPHHENEIA 239 (465)
T ss_pred --------------------------------------HHHHHhcC------------CCceeeccccccccchHHHHHH
Confidence 01011111 2569999999999999999999
Q ss_pred HhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHH
Q 005849 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKL 639 (674)
Q Consensus 560 ~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl 639 (674)
.+.+++++ ||.++|+|+.+++.+|+|||||+||+|+++|++++||+|++|||+++.+++++++|+.+.|+++++.+++|
T Consensus 240 qs~a~~g~-~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~rl 318 (465)
T TIGR00435 240 QSEAAFGK-QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALERL 318 (465)
T ss_pred HHHHhcCC-CCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHHHH
Confidence 99998885 77889999877789999999999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHh
Q 005849 640 WNAGKFILQ 648 (674)
Q Consensus 640 ~n~~~f~~~ 648 (674)
+|+++++..
T Consensus 319 ~~~~~~~~~ 327 (465)
T TIGR00435 319 YKALRVLDT 327 (465)
T ss_pred HHHHHHHHh
Confidence 999998754
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=350.49 Aligned_cols=333 Identities=18% Similarity=0.178 Sum_probs=242.3
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccc
Q 005849 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE 160 (674)
Q Consensus 81 f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~ 160 (674)
|.+ .+.-++++|.|.|| +.+||||+|+++..|+++||+|++||+|.|+.|+|+||.+| .+.++++|++++
T Consensus 31 f~p---~~~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKI----i~~A~~~g~t~~- 100 (411)
T TIGR03447 31 VEP---GPEAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPL----FERAERDGVDWR- 100 (411)
T ss_pred ccC---CCcceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHH----HHHHHHcCCCHH-
Confidence 655 34567888888777 89999999999999999999999999999999999999884 445677899887
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cC-CCCccccCChhHHHHHHHHHHHHHHcCceEEccc----ceeccCC
Q 005849 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGAS-CD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY----MVNWSPN 234 (674)
Q Consensus 161 l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~-~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~----~v~w~p~ 234 (674)
++++.+.+.+.+++++|||. .| +-+ |++. .+.+++++++|.++|++|+... .|+++..
T Consensus 101 -----------ela~~y~~~f~~d~~~Lni~~~d~~~R---aTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~ 164 (411)
T TIGR03447 101 -----------ELGTSQIDLFREDMEALRVLPPRDYIG---AVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIE 164 (411)
T ss_pred -----------HHHHHHHHHHHHHHHHcCCCCCCcccC---CCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEecc
Confidence 55688999999999999986 44 333 4333 7899999999999999999886 6887643
Q ss_pred CCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeee
Q 005849 235 LQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIIS 314 (674)
Q Consensus 235 ~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~ 314 (674)
. .+.|..|.|+....-.. ..
T Consensus 165 ~-----------------------------------------------------~~~YG~Ls~~~~~~~~~-------~~ 184 (411)
T TIGR03447 165 A-----------------------------------------------------TEQFGYESGYDRATMLE-------LF 184 (411)
T ss_pred c-----------------------------------------------------hhccccccCCCHHHHHh-------hh
Confidence 1 01122221111000000 00
Q ss_pred cccccccCCCcceeeCC-CCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccc
Q 005849 315 DKYVDKEFGTGVLKISP-GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPH 393 (674)
Q Consensus 315 ~~~V~~~~GTG~v~~~P-~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~ 393 (674)
-+.++-...+ -.++.||.++++.+
T Consensus 185 -------~~~~~~~~~~~K~~p~DFaLWK~~~------------------------------------------------ 209 (411)
T TIGR03447 185 -------AERGGDPDRPGKRDPLDALLWRAAR------------------------------------------------ 209 (411)
T ss_pred -------cccccCcccccCCCCcccceeCCCC------------------------------------------------
Confidence 0000000000 13444444443211
Q ss_pred ccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeee
Q 005849 394 TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYI 473 (674)
Q Consensus 394 ~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~ 473 (674)
.+++ -| ...||.--|-|++
T Consensus 210 --------------------------------------~~e~-------------------~w----~spwG~GRPGWHi 228 (411)
T TIGR03447 210 --------------------------------------EGEP-------------------SW----DSPFGPGRPGWHI 228 (411)
T ss_pred --------------------------------------CCCC-------------------Cc----cCCCCCCCChhHH
Confidence 0111 12 4579999999999
Q ss_pred cCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhH
Q 005849 474 VGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFW 553 (674)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w 553 (674)
||. .+....+| -+.|++.+|.|++|+|
T Consensus 229 ECs-----------------------------------------am~~~~lg------------~~~Dih~GG~DLifpH 255 (411)
T TIGR03447 229 ECS-----------------------------------------AIATNRLG------------AGFDIQGGGSDLIFPH 255 (411)
T ss_pred HHH-----------------------------------------HHHHHHcC------------CceecccCcccccccc
Confidence 871 11111111 1358999999999999
Q ss_pred HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcCCCCCccccCHHHHHHH
Q 005849 554 VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTAN 632 (674)
Q Consensus 554 ~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~~~~~d~~fs~~~l~~~ 632 (674)
..++++.+.++.++.||.++|+|+.+++.+|+|||||+||+|+++|+++. |++|++|||+++++++++++|+++.|+++
T Consensus 256 heneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~fs~e~l~~a 335 (411)
T TIGR03447 256 HEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDWTDAVLAEA 335 (411)
T ss_pred hHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCCccCHHHHHHH
Confidence 99999999999998899999999999999999999999999999999886 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-------------HhcCCCCCChhHHHHHHHhHHH
Q 005849 633 KAFTNKLWNAGKFI-------------LQNLPSQNDISRWEILLAYKVC 668 (674)
Q Consensus 633 ~~~~~kl~n~~~f~-------------~~~~~~~~~~~~~~~L~~~~~~ 668 (674)
++.+++|++++..+ ....+|++.+..+..|...-+-
T Consensus 336 ~~~l~rl~~~~~~~~~~~~~~~~~~~~~al~dDln~p~a~~~l~~~~~~ 384 (411)
T TIGR03447 336 EARLARWRAALAATDAPDATDLIARLRQHLANDLDTPAALAAVDNWAAA 384 (411)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 99999999887532 1123567766666666655443
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=347.15 Aligned_cols=329 Identities=19% Similarity=0.180 Sum_probs=241.0
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
-++++|.|.|| +++||||+|+++..|+++||+|++|++|.++.|+|+||.+| .+.++++|++++
T Consensus 10 v~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKI----i~~A~~~G~~~~---------- 73 (384)
T PRK12418 10 ATMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPL----LERAARDGVDWR---------- 73 (384)
T ss_pred eEEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHH----HHHHHHcCCCHH----------
Confidence 36777777666 99999999999999999999999999999999999999884 455677899987
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-ccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEccc----ceeccCCCCcccccch
Q 005849 170 VWEWKEKYGGTITSQIKRLGA-SCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY----MVNWSPNLQTAVSDLE 243 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi-~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~----~v~w~p~~~t~lsd~E 243 (674)
++++.+.+.+.+++++||| ..| +-| |++ +.+.++.++++|.++|++|+... .|+++...-
T Consensus 74 --e~a~~~~~~f~~d~~~Lni~~~~~~~r---aTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~------- 139 (384)
T PRK12418 74 --DLAEREIALFREDMEALRVLPPRDYVG---AVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDAT------- 139 (384)
T ss_pred --HHHHHHHHHHHHHHHHhCCCCCCcccc---CCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCch-------
Confidence 5668899999999999997 455 322 444 48899999999999999999988 788865410
Q ss_pred hhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccC-
Q 005849 244 VEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEF- 322 (674)
Q Consensus 244 v~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~- 322 (674)
+.|..|.|+.... ...
T Consensus 140 ----------------------------------------------~~YG~ls~~~~~~-----------------~~~~ 156 (384)
T PRK12418 140 ----------------------------------------------PQFGYESGYDRAT-----------------MLEL 156 (384)
T ss_pred ----------------------------------------------hhcccccCCCHHH-----------------HHhh
Confidence 0111111110000 000
Q ss_pred -CCcceee-CC-CCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccc
Q 005849 323 -GTGVLKI-SP-GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (674)
Q Consensus 323 -GTG~v~~-~P-~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (674)
|...+-. .+ -.++.||.+++..
T Consensus 157 ~~~~~~~~~~~~K~~p~DFaLWK~~------------------------------------------------------- 181 (384)
T PRK12418 157 FAERGGDPDRPGKRDPLDALLWRAA------------------------------------------------------- 181 (384)
T ss_pred hcccccCcccccCCCcccceeeccC-------------------------------------------------------
Confidence 0000000 00 1233343333210
Q ss_pred ccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCccc
Q 005849 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (674)
Q Consensus 400 ~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~ 479 (674)
++ +++ -| ...||.--|-|++||.
T Consensus 182 -----~~--------------------------~~~-------------------~w----~spwG~GRPGWHiECs--- 204 (384)
T PRK12418 182 -----RP--------------------------GEP-------------------SW----PSPFGPGRPGWHIECS--- 204 (384)
T ss_pred -----CC--------------------------CCC-------------------cc----cCCCCCCCChhHHHHH---
Confidence 00 011 12 4579999999999871
Q ss_pred EEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHH
Q 005849 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVM 559 (674)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~ 559 (674)
.+....+| -+.|++.+|.|++|+|..++++
T Consensus 205 --------------------------------------am~~~~lg------------~~~DIH~GG~DL~FPHHeneia 234 (384)
T PRK12418 205 --------------------------------------AIALNRLG------------SGFDIQGGGSDLIFPHHEFSAA 234 (384)
T ss_pred --------------------------------------HHHHHHcC------------CCcccccCccccccchhHhHHH
Confidence 11111111 1469999999999999999999
Q ss_pred HhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHH
Q 005849 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAFTNK 638 (674)
Q Consensus 560 ~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~k 638 (674)
.+.++.++.||.++|+|+.+++.+|+|||||+||+|++.++++. ++++++|||+++++++++++|+++.|+++++.+.+
T Consensus 235 q~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r 314 (384)
T PRK12418 235 HAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLAR 314 (384)
T ss_pred HHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHH
Confidence 99999998899999999999999999999999999999998754 66669999999888899999999999999999999
Q ss_pred HHHHHHHH-------------HhcCCCCCChhHHHHHHHhHHHHHhhc
Q 005849 639 LWNAGKFI-------------LQNLPSQNDISRWEILLAYKVCVLTYG 673 (674)
Q Consensus 639 l~n~~~f~-------------~~~~~~~~~~~~~~~L~~~~~~~~~~~ 673 (674)
+++++... ....+|++.+..+..|...-+-+-.|+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~ 362 (384)
T PRK12418 315 WRAAAALPAGPDAADVVARVRAALADDLDTPGALAAVDGWATDALEGG 362 (384)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcc
Confidence 99887532 112356777777777776666555553
|
|
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=347.16 Aligned_cols=305 Identities=18% Similarity=0.197 Sum_probs=231.9
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC----------CCCCCCchhHHHHHHHHHHcCCCccc
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP----------GTDHAGIATQLVVEKMLAAEGIKRVE 160 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~----------G~D~~Gl~~e~~ve~~~~~~g~~~~~ 160 (674)
+.++ .| |++++.+||||+|+++..|+++||++++||+|.|+. |.|+||-.+ .+.++++|+++.
T Consensus 25 ~mYv-CG-pTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKi----i~~A~~~g~~~~- 97 (490)
T PRK14536 25 RLYG-CG-PTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKM----VKSAQEHGKSVL- 97 (490)
T ss_pred EEEe-eC-CccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHH----HHHHHHcCCCHH-
Confidence 3444 44 688899999999999999999999999999999996 888888774 445677899886
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccc
Q 005849 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVS 240 (674)
Q Consensus 161 l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~ls 240 (674)
++++.+.+.+.+++++|||..+ .++|..++|...++.++++|.++|++|+....|+||+..
T Consensus 98 -----------e~a~~~~~~f~~d~~~Lni~~~---~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~----- 158 (490)
T PRK14536 98 -----------EIAAHYTAAFFRDTARLNIERP---SIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT----- 158 (490)
T ss_pred -----------HHHHHHHHHHHHHHHHcCCCCC---ceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc-----
Confidence 5668899999999999999886 244667899999999999999999999999999998741
Q ss_pred cchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccc
Q 005849 241 DLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDK 320 (674)
Q Consensus 241 d~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~ 320 (674)
.+.|.+|.|+.... +
T Consensus 159 ------------------------------------------------~~~YG~Ls~~~~~~-----------------l 173 (490)
T PRK14536 159 ------------------------------------------------FPSYGSLASAAVED-----------------L 173 (490)
T ss_pred ------------------------------------------------ccchhhhcCCCHHH-----------------h
Confidence 01122222211000 0
Q ss_pred cCCCcceeeCC-CCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccc
Q 005849 321 EFGTGVLKISP-GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (674)
Q Consensus 321 ~~GTG~v~~~P-~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (674)
..|.. |-..+ -.++.||.+++..
T Consensus 174 ~~g~~-v~~~~~K~np~DFaLWK~~------------------------------------------------------- 197 (490)
T PRK14536 174 QAGAR-IEHDTNKRNPHDFVLWFTR------------------------------------------------------- 197 (490)
T ss_pred hcCCc-CCCCCCCCCchhchhcccc-------------------------------------------------------
Confidence 00000 00000 1233444443210
Q ss_pred ccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCccc
Q 005849 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (674)
Q Consensus 400 ~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~ 479 (674)
+.+.+..++....||.+.|-|+++|.
T Consensus 198 ---------------------------------------------------~~~~~~~~~W~SpWG~GRPGWHIECs--- 223 (490)
T PRK14536 198 ---------------------------------------------------SKFENHALTWDSPWGRGYPGWHIECS--- 223 (490)
T ss_pred ---------------------------------------------------cCCCCCCCcccCCCCCCCCChHHHHH---
Confidence 01112233457789999999999871
Q ss_pred EEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHH
Q 005849 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVM 559 (674)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~ 559 (674)
.+....+| . ..|++.+|.|++|+|....++
T Consensus 224 --------------------------------------aMs~~~lg------~------~~DIH~GG~DliFPHHeneiA 253 (490)
T PRK14536 224 --------------------------------------AMSMKYLG------E------QCDIHIGGVDHIRVHHTNEIA 253 (490)
T ss_pred --------------------------------------HHHHHHcC------C------ceeEEeccccCCCcchhhHHH
Confidence 11111111 1 249999999999999999999
Q ss_pred HhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHH
Q 005849 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAFTNK 638 (674)
Q Consensus 560 ~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~k 638 (674)
++.+++++ ||.++|+|+.++..+|+|||||+||+|+++|++++ |+++++||++++.+++++++|+++.|+++.+.+.+
T Consensus 254 qs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~r 332 (490)
T PRK14536 254 QCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRS 332 (490)
T ss_pred HHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99988886 88999999988889999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 005849 639 LWNAGKFIL 647 (674)
Q Consensus 639 l~n~~~f~~ 647 (674)
|.+++..+.
T Consensus 333 l~~~~~~~~ 341 (490)
T PRK14536 333 LVRRVARVV 341 (490)
T ss_pred HHHHHHHHH
Confidence 999876653
|
|
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=352.81 Aligned_cols=332 Identities=17% Similarity=0.191 Sum_probs=246.5
Q ss_pred hccCCCCCCCCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCC
Q 005849 51 AAENNKDTLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRP 129 (674)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~ 129 (674)
++|.......+-||. ..++.- |.+.. .++-+.++| | |++.|.+||||+|+++..|+++||++++||+
T Consensus 51 ~~~~~~~~~l~lyNTltr~ke~---------f~P~~-~~~v~~Y~C-G-pTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~ 118 (557)
T PLN02946 51 GAPASRGRELHLYNTMSRKKEL---------FKPKV-EGKVGMYVC-G-VTAYDLSHIGHARVYVTFDVLYRYLKHLGYE 118 (557)
T ss_pred CCcCCCCCceEEEECCCCCeec---------cccCC-CCceeEEEe-C-CccCCCCccccchhhHHHHHHHHHHHhcCCc
Confidence 556666666777886 433222 66543 234456665 4 5777999999999999999999999999999
Q ss_pred eeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHH
Q 005849 130 TLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAV 209 (674)
Q Consensus 130 V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v 209 (674)
|.++.|+|++|.+| .+.++++|+++. ++++++.+.+.+++++|||.-. .+.|...+|...+
T Consensus 119 V~~V~niTDiDDKI----i~~A~~~g~~~~------------ela~~y~~~f~~d~~~LnI~~p---~~~pratehi~~i 179 (557)
T PLN02946 119 VRYVRNFTDVDDKI----IARANELGEDPI------------SLSRRYCEEFLSDMAYLHCLPP---SVEPRVSDHIPQI 179 (557)
T ss_pred EEEEECCCCccCHH----HHHHHHcCCCHH------------HHHHHHHHHHHHHHHHCCCCCC---CeecCcchhHHHH
Confidence 99999999999985 445677898887 5668899999999999999744 3447788999999
Q ss_pred HHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCC
Q 005849 210 VEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQD 289 (674)
Q Consensus 210 ~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~ 289 (674)
++++++|+++|++|++...|+||... .
T Consensus 180 i~~i~~Li~kG~aY~~~g~VYFdv~~-----------------------------------------------------f 206 (557)
T PLN02946 180 IDMIKQILDNGCAYRVDGDVYFSVDK-----------------------------------------------------F 206 (557)
T ss_pred HHHHHHHHHCCCEEEECCeEEEecCc-----------------------------------------------------c
Confidence 99999999999999999999998651 1
Q ss_pred chhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCC
Q 005849 290 EHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLD 369 (674)
Q Consensus 290 ~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~ 369 (674)
+.|..|.|+....- ..|..+-...--.+|.||.+++..+
T Consensus 207 ~~YG~Ls~~~l~~l-----------------~~g~rv~~~~~K~np~DFaLWK~~k------------------------ 245 (557)
T PLN02946 207 PEYGKLSGRKLEDN-----------------RAGERVAVDSRKKNPADFALWKAAK------------------------ 245 (557)
T ss_pred hhhhhcCCCChhHh-----------------hcCCCCCcccccCCccccceeccCC------------------------
Confidence 12333333221100 0011100000123455555553211
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHH
Q 005849 370 RFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHW 449 (674)
Q Consensus 370 ~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~ 449 (674)
.|++
T Consensus 246 --------------------------------------------------------------~ge~-------------- 249 (557)
T PLN02946 246 --------------------------------------------------------------EGEP-------------- 249 (557)
T ss_pred --------------------------------------------------------------CCCC--------------
Confidence 0111
Q ss_pred HhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCC
Q 005849 450 LSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529 (674)
Q Consensus 450 l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~ 529 (674)
-| ...||..-|-|++||. .|....+|
T Consensus 250 -----~W----~SPWG~GRPGWHIECS-----------------------------------------aMs~~~lG---- 275 (557)
T PLN02946 250 -----FW----DSPWGPGRPGWHIECS-----------------------------------------AMSAAYLG---- 275 (557)
T ss_pred -----Cc----cCCCCCCCCcHHHHHH-----------------------------------------HHHHHHcC----
Confidence 13 4579999999999871 11111111
Q ss_pred ChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEee-eeEeCCCCccccccCCCccChhhHHhhhChhH
Q 005849 530 SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADA 608 (674)
Q Consensus 530 ~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~h-g~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~ 608 (674)
-+.|++.+|.|++|+|....++.+.+..++ ||.+.|+| |++. .+|+|||||+||+++++|++++||+|+
T Consensus 276 --------~~~DIH~GG~DL~FPHHENEiAQsea~~g~-~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~y~~da 345 (557)
T PLN02946 276 --------HSFDIHGGGMDLVFPHHENEIAQSCAACCD-SNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDLYHPLA 345 (557)
T ss_pred --------CCeeEeccccccCCCcccchHHHHHHHhCC-CCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHhcCccc
Confidence 135999999999999999999999887775 67788888 5555 999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Q 005849 609 LRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFIL 647 (674)
Q Consensus 609 lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~ 647 (674)
+|||+++++++++++|+++.|+.+.+.+.+++++++.+.
T Consensus 346 lR~~lLs~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~ 384 (557)
T PLN02946 346 LRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCE 384 (557)
T ss_pred eeeeeeccCCCCCcEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888888876653
|
|
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=341.52 Aligned_cols=302 Identities=21% Similarity=0.250 Sum_probs=228.8
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
+.++|- |++.+.+||||+|+++..|+++||++++||+|.++.|+|++|-+| .+.+++.|+++.
T Consensus 250 ~mYvCG--PTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKI----I~~A~e~G~sp~----------- 312 (699)
T PRK14535 250 RMYVCG--MTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKI----IARAAENGETIG----------- 312 (699)
T ss_pred EEEecC--CcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHH----HHHHHHcCCCHH-----------
Confidence 344444 577799999999999999999999999999999999999999884 445677898887
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc-cceeccCCCCcccccchhhccCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~-~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
++++.+.+.+.+++++|||..+ .+.|...+|...++.++++|.++|++|++. ..|+||..+-
T Consensus 313 -ela~~y~~~F~~d~~~LnI~~p---~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f------------- 375 (699)
T PRK14535 313 -ELTARFIQAMHEDADALGVLRP---DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF------------- 375 (699)
T ss_pred -HHHHHHHHHHHHHHHHcCCCCC---cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc-------------
Confidence 5668899999999999999888 245667799999999999999999999874 4799986521
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
+.|..|.|+.... +..|..+-..
T Consensus 376 ----------------------------------------~~YG~LS~~~~~~-----------------l~~g~rve~d 398 (699)
T PRK14535 376 ----------------------------------------AAYGQLSGKSLDD-----------------LRAGERVEVD 398 (699)
T ss_pred ----------------------------------------cccccccCCChHH-----------------hcCCCccccc
Confidence 1122222211100 0001100000
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
.--.++.||.+++...
T Consensus 399 ~~Krnp~DFaLWK~sk---------------------------------------------------------------- 414 (699)
T PRK14535 399 GFKRDPLDFVLWKAAK---------------------------------------------------------------- 414 (699)
T ss_pred cccCCccccceeccCC----------------------------------------------------------------
Confidence 0124555666554311
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHH
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~ 489 (674)
.|+. -| ...||..-|-|++||
T Consensus 415 ----------------------~Gep-------------------~W----~SPWG~GRPGWHIEC-------------- 435 (699)
T PRK14535 415 ----------------------AGEP-------------------AW----ESPWGNGRPGWHIEC-------------- 435 (699)
T ss_pred ----------------------CCCC-------------------Cc----cCCCCCCCCchHHHH--------------
Confidence 0111 13 457999999999987
Q ss_pred HHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCC-
Q 005849 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV- 568 (674)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~- 568 (674)
+.+....+| . +.|++.+|.|++|+|.-..++.+.+.+|+.
T Consensus 436 ---------------------------SAMs~~~LG------~------~~DIHgGG~DLiFPHHENEiAQseA~~g~~~ 476 (699)
T PRK14535 436 ---------------------------SAMSENLFG------D------TFDIHGGGADLQFPHHENEIAQSVGATGHTC 476 (699)
T ss_pred ---------------------------HHHHHHHcC------C------cceeECCccccCCCCCccHHHHHHHhhCCCc
Confidence 111111121 1 359999999999999999999998877762
Q ss_pred --------------CcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHH
Q 005849 569 --------------PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKA 634 (674)
Q Consensus 569 --------------Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~ 634 (674)
||.++|+|+-++..+|+|||||+||++++.|++++||+|++|||+++++++++++|+.+.|+++++
T Consensus 477 ~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLsshYRspL~fS~e~Le~Ak~ 556 (699)
T PRK14535 477 GHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKG 556 (699)
T ss_pred ccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHHHHH
Confidence 588999986555599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005849 635 FTNKLWNAGKF 645 (674)
Q Consensus 635 ~~~kl~n~~~f 645 (674)
.+++++++++-
T Consensus 557 ~l~Rl~~~l~~ 567 (699)
T PRK14535 557 ALTRLYTTLKN 567 (699)
T ss_pred HHHHHHHHHHh
Confidence 99999888754
|
|
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=345.13 Aligned_cols=322 Identities=20% Similarity=0.261 Sum_probs=237.3
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHH-HcCCCeeecCCCCCCCchhHHHHHHHHHHcCCC-c
Q 005849 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHR-MKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK-R 158 (674)
Q Consensus 81 f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r-~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~-~ 158 (674)
|.+.. .+.-++++|.|.+| +.+||||||+++..|++.||++ +.||+|.|++|+|++|-.| .+.+++.|++ +
T Consensus 53 f~p~~-~~~v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKI----i~~A~~~g~~~~ 125 (651)
T PTZ00399 53 FVPQN-GRQVRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKI----IKRAREEKLSIF 125 (651)
T ss_pred cccCC-CCeeEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHH----HHHHHHhCCCcH
Confidence 65543 34456888888777 9999999999999999999999 9999999999999999874 4556777887 6
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcc
Q 005849 159 VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238 (674)
Q Consensus 159 ~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~ 238 (674)
. ++++.+.+.+.+++++|||..+ .+.+...+|...+..++++|.++|++|.+...|+++...
T Consensus 126 ~------------el~~~~~~~f~~d~~~Lni~~p---~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~--- 187 (651)
T PTZ00399 126 L------------ELARKWEKEFFEDMKALNVRPP---DVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA--- 187 (651)
T ss_pred H------------HHHHHHHHHHHHHHHHcCCCCC---ccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchh---
Confidence 5 5668899999999999999876 233333689999999999999999999998877776431
Q ss_pred cccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccc
Q 005849 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYV 318 (674)
Q Consensus 239 lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V 318 (674)
|+- ....|..|. |-. ..+-.
T Consensus 188 -------------------f~~---------------------------~~~~Yg~L~------p~~--------~~~~~ 207 (651)
T PTZ00399 188 -------------------FRK---------------------------AGHVYPKLE------PES--------VADED 207 (651)
T ss_pred -------------------ccc---------------------------chhhHHhhC------hhh--------cCCHH
Confidence 000 000111111 000 00111
Q ss_pred cccCCCcce-eeC-CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccc
Q 005849 319 DKEFGTGVL-KIS-PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLR 396 (674)
Q Consensus 319 ~~~~GTG~v-~~~-P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~ 396 (674)
.+..|.|.+ ..+ -..++.||.+++.-
T Consensus 208 ~~~~g~~~l~~~~~~Kr~~~DFaLWk~~---------------------------------------------------- 235 (651)
T PTZ00399 208 RIAEGEGALGKVSGEKRSPNDFALWKAS---------------------------------------------------- 235 (651)
T ss_pred HHhcccCCccccCcCCCCCccHHhhCCC----------------------------------------------------
Confidence 111233311 111 12344555544210
Q ss_pred cccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCC
Q 005849 397 VPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476 (674)
Q Consensus 397 ~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~ 476 (674)
.| ++ ..|. ..||-.-|.|+++|.
T Consensus 236 --------kp--------------------------ge-------------------p~W~----SpwG~GrPGWHiECs 258 (651)
T PTZ00399 236 --------KP--------------------------GE-------------------PSWD----SPWGKGRPGWHIECS 258 (651)
T ss_pred --------CC--------------------------CC-------------------CCCC----CCCCCCCCCchHHHH
Confidence 00 01 1132 468888999999761
Q ss_pred cccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHH
Q 005849 477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVAR 556 (674)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~ 556 (674)
.+--..+ .+|.|++.+|.|++|+|.-+
T Consensus 259 -----------------------------------------am~~~~l------------g~~~DIh~gG~DL~FPHHeN 285 (651)
T PTZ00399 259 -----------------------------------------AMASNIL------------GDPIDIHSGGIDLKFPHHDN 285 (651)
T ss_pred -----------------------------------------HHHHHHc------------CCcceeeccCCCCCCCcchh
Confidence 1111111 13789999999999999999
Q ss_pred HHHHhhhhcCCCCcceeEee-eeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHH
Q 005849 557 MVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAF 635 (674)
Q Consensus 557 ~~~~~~~~~~~~Pf~~v~~h-g~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~ 635 (674)
.++.+.+++++.||.++|+| |++. .+|+|||||+||+|+|+|++++||+|++||||++.+++++++||++.+..+.+.
T Consensus 286 EiAQseA~~~~~~~v~y~~H~G~L~-i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~ 364 (651)
T PTZ00399 286 ELAQSEAYFDKHQWVNYFLHSGHLH-IKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIEK 364 (651)
T ss_pred HHHHHHHhhCCCCCCcEEEEEEEEE-eccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHHHHHHHHHH
Confidence 99999999998899999999 7765 899999999999999999999999999999999988899999999999999888
Q ss_pred HHHHHHHHHHHHhcC
Q 005849 636 TNKLWNAGKFILQNL 650 (674)
Q Consensus 636 ~~kl~n~~~f~~~~~ 650 (674)
.++++|++..+...+
T Consensus 365 ~~~l~n~~~rl~s~l 379 (651)
T PTZ00399 365 DKVFFNFFANVKIKL 379 (651)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999988876544
|
|
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=325.93 Aligned_cols=299 Identities=18% Similarity=0.220 Sum_probs=224.6
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeee---------cCCC-CCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLW---------LPGT-DHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 99 P~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~---------~~G~-D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
|++...+||||+|+++..|+++||++++||+|.+ +.|. |+||-+ +.+.++++|+++.
T Consensus 29 pTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddK----Ii~~A~~~g~~~~--------- 95 (481)
T PRK14534 29 PTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDK----VVKAARERGLTVY--------- 95 (481)
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcH----HHHHHHHcCCCHH---------
Confidence 6777999999999999999999999999999999 6888 444544 5556678899987
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
++++.+.+.+.+++++|||..|- +....++|...++.++++|.++|++|.....|+||+.+-
T Consensus 96 ---e~a~~~~~~f~~d~~~Lni~~~~---~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~------------ 157 (481)
T PRK14534 96 ---EISRFFTEAFFDDCKKLNIVYPD---KVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF------------ 157 (481)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCCc---eecCccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc------------
Confidence 56688999999999999999882 222357899999999999999999999999999987631
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEec-CCCCCceeeeeecccccccCCCcce
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV-PMTYGRHVPIISDKYVDKEFGTGVL 327 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~-P~~~~~~vpii~~~~V~~~~GTG~v 327 (674)
+.|.+|.|+.... +- ..|+++
T Consensus 158 -----------------------------------------~~YG~ls~~~l~~l~~----------------~~~~~v- 179 (481)
T PRK14534 158 -----------------------------------------KSYGQMAGINLNDFKD----------------MSVSRV- 179 (481)
T ss_pred -----------------------------------------cchhhhcCCCHHHHhh----------------hccCcC-
Confidence 1122222211110 00 000000
Q ss_pred eeC-CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCc
Q 005849 328 KIS-PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 406 (674)
Q Consensus 328 ~~~-P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 406 (674)
... --.++.||.+++..
T Consensus 180 ~~~~~K~np~DFaLWK~~-------------------------------------------------------------- 197 (481)
T PRK14534 180 EIDKSKRNKSDFVLWFTN-------------------------------------------------------------- 197 (481)
T ss_pred CcccCCCCcccchhcCcC--------------------------------------------------------------
Confidence 000 01222233222100
Q ss_pred ccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCCh
Q 005849 407 IEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA 486 (674)
Q Consensus 407 i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~ 486 (674)
+.+++..+++...||..-|-|++||.
T Consensus 198 --------------------------------------------~~~~~~~~~w~spWG~GrPgWHiECs---------- 223 (481)
T PRK14534 198 --------------------------------------------SKFKDQEMKWDSPWGFGYPSWHLECA---------- 223 (481)
T ss_pred --------------------------------------------CcCCCCCCeecCCCCCcCCcHHHHHH----------
Confidence 11344556678899999999999871
Q ss_pred hHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcC
Q 005849 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTG 566 (674)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~ 566 (674)
.+....++ -..|++.+|.|++|+|....++++.+.++
T Consensus 224 -------------------------------am~~~~lg------------~~~DIH~GG~DliFPHHene~Aqs~a~~g 260 (481)
T PRK14534 224 -------------------------------AMNLEYFK------------STLDIHLGGVDHIGVHHINEIAIAECYLN 260 (481)
T ss_pred -------------------------------HHHHHHcC------------CcceEEecccccCCCcchhHHHHHhhhcC
Confidence 01111111 13599999999999999999999988877
Q ss_pred CCCcceeEeeeeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHH
Q 005849 567 SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKF 645 (674)
Q Consensus 567 ~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f 645 (674)
+ ||.++|+|+-++..+|+|||||+||+++++|++++ |+++++||++++.+++++++||++.|+++++.+.++++.++.
T Consensus 261 ~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~ 339 (481)
T PRK14534 261 K-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTY 339 (481)
T ss_pred C-CcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5 77899999866668999999999999999999996 999999999999999999999999999999989898887764
Q ss_pred H
Q 005849 646 I 646 (674)
Q Consensus 646 ~ 646 (674)
+
T Consensus 340 ~ 340 (481)
T PRK14534 340 F 340 (481)
T ss_pred H
Confidence 4
|
|
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=307.36 Aligned_cols=335 Identities=22% Similarity=0.299 Sum_probs=245.4
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccc
Q 005849 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE 160 (674)
Q Consensus 81 f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~ 160 (674)
|.+..+ ++-+.++|- |++....||||+|+++..|++.||++.+||.|.|+..+-+- ..++.+.+.+.|.+..
T Consensus 15 F~P~~~-~~V~mYvCG--pTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDI----DDKIi~rA~~~g~~~~- 86 (464)
T COG0215 15 FVPIDP-GKVKMYVCG--PTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDI----DDKIINRAREEGLSIR- 86 (464)
T ss_pred ccCCCC-CeEEEEecC--CccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccc----cHHHHHHHHHhCCCHH-
Confidence 555332 233455544 57889999999999999999999999999999999887664 4456677788888755
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCccccCChhHHHHHHHHHHHHHHcCceEEc-ccceeccCCCCcc
Q 005849 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGASC-DWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNLQTA 238 (674)
Q Consensus 161 l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~-~~~v~w~p~~~t~ 238 (674)
++++.|.+.+.+++..|||.- |.. +--.+|...+.+++++|.++|++|.. ...|+|+...
T Consensus 87 -----------ev~~~~i~~f~~D~~aL~v~~p~~~----PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~--- 148 (464)
T COG0215 87 -----------EVAERYIAAFFEDMDALNVLPPDIE----PRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSK--- 148 (464)
T ss_pred -----------HHHHHHHHHHHHHHHHhCCCCCccc----CcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEeccc---
Confidence 567899999999999999953 422 33346888999999999999999998 5789886541
Q ss_pred cccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccc
Q 005849 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYV 318 (674)
Q Consensus 239 lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V 318 (674)
.+.|.+|.|+....-+..
T Consensus 149 --------------------------------------------------f~~YG~LS~~~~le~l~~------------ 166 (464)
T COG0215 149 --------------------------------------------------FKDYGKLSGRDSLEELQA------------ 166 (464)
T ss_pred --------------------------------------------------chhhHhhcCCCChhHHhh------------
Confidence 112333333211000000
Q ss_pred cccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccc
Q 005849 319 DKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 398 (674)
Q Consensus 319 ~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p 398 (674)
|..+-...--.+|.||.+++..+
T Consensus 167 ----gar~~~~~~Krnp~DFvLWK~sk----------------------------------------------------- 189 (464)
T COG0215 167 ----GARVEVDEEKRNPLDFVLWKAAK----------------------------------------------------- 189 (464)
T ss_pred ----ccccccccccCCchhheeeccCC-----------------------------------------------------
Confidence 00000000023445555543211
Q ss_pred cccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcc
Q 005849 399 RSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEE 478 (674)
Q Consensus 399 ~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~ 478 (674)
.|+. -| ...||..-|-|++||
T Consensus 190 ---------------------------------~gEp-------------------~W----~SPWG~GRPGWHIEC--- 210 (464)
T COG0215 190 ---------------------------------PGEP-------------------SW----DSPWGKGRPGWHIEC--- 210 (464)
T ss_pred ---------------------------------CCCC-------------------CC----CCCCCCCCCchhHHH---
Confidence 0111 13 678999999999987
Q ss_pred cEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHH
Q 005849 479 EYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMV 558 (674)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~ 558 (674)
+.|....+| +. .|++.+|.|++|+|.-..+
T Consensus 211 --------------------------------------SaM~~~~LG------~~------~DIHgGG~DLiFPHHENEi 240 (464)
T COG0215 211 --------------------------------------SAMSTKYLG------ET------FDIHGGGSDLIFPHHENEI 240 (464)
T ss_pred --------------------------------------HHHHHHHhC------CC------cceecCcccccCCCcccHH
Confidence 112222232 12 3999999999999999999
Q ss_pred HHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHH
Q 005849 559 MMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNK 638 (674)
Q Consensus 559 ~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~k 638 (674)
+.+.+.+|..||.++|+|.-++..+|+|||||+||++++.|++++|++.+|||+|++++++++++||++.|+++++.+.+
T Consensus 241 AQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~r 320 (464)
T COG0215 241 AQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALER 320 (464)
T ss_pred HHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHH
Confidence 99999999889999999977667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh--------------------cCCCCCChhHHHHHHHhHHHH
Q 005849 639 LWNAGKFILQ--------------------NLPSQNDISRWEILLAYKVCV 669 (674)
Q Consensus 639 l~n~~~f~~~--------------------~~~~~~~~~~~~~L~~~~~~~ 669 (674)
|.++++.+.. ..+||+.+..+..|...-+.+
T Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~ 371 (464)
T COG0215 321 LYNALRRLRDLAGDAELADLKEFEARFREALDDDFNTPKALAVLFELAKEI 371 (464)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999886432 225666666666666665554
|
|
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=272.89 Aligned_cols=86 Identities=28% Similarity=0.413 Sum_probs=81.7
Q ss_pred CcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC
Q 005849 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA 618 (674)
Q Consensus 539 P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~ 618 (674)
|.|++.+|.|++++|..++++++.++.++ ||.++++|+.+++.+|+|||||+||+|+++|++++||+|++|||+++.++
T Consensus 128 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~ 206 (213)
T cd00672 128 TFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206 (213)
T ss_pred CccEEeecCCCCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCc
Confidence 45899999999999999999999999888 89999999988889999999999999999999999999999999999999
Q ss_pred CCccccC
Q 005849 619 GQDLSLS 625 (674)
Q Consensus 619 ~~d~~fs 625 (674)
+++++|+
T Consensus 207 ~~~l~f~ 213 (213)
T cd00672 207 RSPLDFS 213 (213)
T ss_pred CCCCCCC
Confidence 9999986
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=271.73 Aligned_cols=290 Identities=23% Similarity=0.314 Sum_probs=190.4
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
++++|- |++...+||||+|+++..|++.||++..||+|.++.+..+.. .++.+.+++.|+++.
T Consensus 10 ~~Y~CG--PTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiD----DKii~~A~~~g~~~~----------- 72 (300)
T PF01406_consen 10 RMYVCG--PTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDID----DKIIKRAREEGVSPQ----------- 72 (300)
T ss_dssp EEEEEE--EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SS----HHHHHHHHHTTS-HH-----------
T ss_pred EEEcCC--CCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccc----hHHHHHHHhccCCHH-----------
Confidence 455554 577799999999999999999999999999999999886653 446677788898876
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc-cceeccCCCCcccccchhhccCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~-~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
+.++.+.+.+.++|++|||.-. ...+--.++...+.+++++|.++|++|... ..|+++...
T Consensus 73 -ela~~y~~~f~~dm~~Lnv~~p---~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~-------------- 134 (300)
T PF01406_consen 73 -ELARRYEEEFFEDMKALNVLPP---DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK-------------- 134 (300)
T ss_dssp -HHHHHHHHHHHHHHHHTT-------SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG--------------
T ss_pred -HHHHHHHHHHHHHHHHcCCCCC---ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc--------------
Confidence 4567889999999999999865 233445579999999999999999999999 999886431
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
.
T Consensus 135 ---------------------------------------~---------------------------------------- 135 (300)
T PF01406_consen 135 ---------------------------------------F---------------------------------------- 135 (300)
T ss_dssp ---------------------------------------S----------------------------------------
T ss_pred ---------------------------------------c----------------------------------------
Confidence 0
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
++.|.+++.+..+....-..+.. ..-+.|. +-+.+
T Consensus 136 ------------------------------~~YG~Ls~~~~~~l~~~~~~~~~----------~~K~~p~-----DFaLW 170 (300)
T PF01406_consen 136 ------------------------------PDYGKLSNQDLEDLEAGARVEVD----------YEKRNPR-----DFALW 170 (300)
T ss_dssp ------------------------------TTTTTTTT-SHHHHHHCHHHTT-----------TTSSSTT------EEEE
T ss_pred ------------------------------cccccccccchhhHHhhhhcccc----------cccCCCc-----ceeee
Confidence 01233333332221110000000 0000010 00000
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHH
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~ 489 (674)
+.. +.+++ -| ...||...|-|++||.
T Consensus 171 K~~------------------~~~e~-------------------~w----~spwG~GRPGWHiECs------------- 196 (300)
T PF01406_consen 171 KAA------------------KPGEP-------------------SW----DSPWGKGRPGWHIECS------------- 196 (300)
T ss_dssp EE--------------------TTS---------------------B------TTSSEEE-HHHHHH-------------
T ss_pred ecc------------------cccCC-------------------cc----cCCCccCcCceeeehH-------------
Confidence 000 00111 12 4579999999999871
Q ss_pred HHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCC
Q 005849 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVP 569 (674)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~P 569 (674)
.+....+| -+.|++.+|.|++|+|....++.+.++++ .|
T Consensus 197 ----------------------------am~~~~lG------------~~~DIH~GG~DL~FPHHENEiAqs~a~~g-~~ 235 (300)
T PF01406_consen 197 ----------------------------AMSMKYLG------------DTFDIHGGGIDLIFPHHENEIAQSEAATG-KP 235 (300)
T ss_dssp ----------------------------HHHHHHHT------------TSEEEEEEEGGGTTTHHHHHHHHHHHHHS-S-
T ss_pred ----------------------------HHHHHHcC------------CCceEEccccccCCCCccchHHHHHHhhC-ch
Confidence 11111111 24699999999999999999999999988 58
Q ss_pred cceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHH
Q 005849 570 FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKA 634 (674)
Q Consensus 570 f~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~ 634 (674)
|.++|+|.-.+..+|+|||||+||+++++|++++|+++++||+|++++++++++||++.|+++++
T Consensus 236 ~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 236 FANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAKN 300 (300)
T ss_dssp SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH-
T ss_pred HHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhcC
Confidence 89999997666689999999999999999999999999999999999999999999999998764
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=261.08 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=99.0
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC--------chhHHHHHHHHHHcCCCcccc
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--------IATQLVVEKMLAAEGIKRVEL 161 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~G--------l~~e~~ve~~~~~~g~~~~~l 161 (674)
.+++|++|+ +|||.+||||++.++.+|+++||+|++|++|.+++|+|+|| +|.+ .++..|++...+
T Consensus 19 ~~~~v~tgi-~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~-----~~~~~G~pi~~i 92 (353)
T cd00674 19 EKYVVASGI-SPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES-----YEQYIGMPLSSV 92 (353)
T ss_pred CeEEEecCC-CCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH-----HHHhcCccchhc
Confidence 569999997 59999999999999999999999999999999999999994 4432 234456665544
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc
Q 005849 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (674)
Q Consensus 162 ~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~ 226 (674)
.++. ..|..|++++.+.+++.|.+|||++|+-+. |.....-...+.++..|.+++.|..-.
T Consensus 93 p~p~--g~~~~~~d~~~~~f~~~l~~lgi~~d~~~~--T~~y~~g~~~~~i~~~L~~~~~I~~i~ 153 (353)
T cd00674 93 PDPF--GCCESYAEHFERPFEESLEKLGIEVEFISQ--SQMYKSGLYDENILIALEKRDEIMAIL 153 (353)
T ss_pred hhhc--CCCHHHHHHHHHHHHHHHHHcCCeeeeeec--CCchhhchHHHHHHHHHHHCChHHHHH
Confidence 3222 234478999999999999999999995431 444444578888889999998876543
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=246.66 Aligned_cols=315 Identities=22% Similarity=0.253 Sum_probs=228.1
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHH-HcCCCeeecCCCCCCCchhHHHHHHHHHH--cCCC
Q 005849 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHR-MKGRPTLWLPGTDHAGIATQLVVEKMLAA--EGIK 157 (674)
Q Consensus 81 f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r-~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~--~g~~ 157 (674)
|-+.. .++-++++|. |++...-||||||+|+--||+.|+++ .-||+|.|++++-+-.- ++.+.++. .+..
T Consensus 48 fip~~-~~~v~wY~CG--pTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDD----KII~RAr~~~m~e~ 120 (586)
T KOG2007|consen 48 FIPNN-GNKVTWYICG--PTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDD----KIIKRARKEEMGEK 120 (586)
T ss_pred eeeCC-CCeEEEEEec--CcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhH----HHHHHhhhhhhccc
Confidence 55432 2334566655 58889999999999999999999999 89999999999876433 34444431 1222
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCc
Q 005849 158 RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237 (674)
Q Consensus 158 ~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t 237 (674)
+..+ .+. + ..|.+.+.++|.+|++... ...|--.+|...+..+++++.++|+.|.....|+++..--.
T Consensus 121 ~~~l-----~~~---F-~~~e~eF~~DM~~LnvLpP---tv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~ 188 (586)
T KOG2007|consen 121 PLSL-----SER---F-CYYEEEFLQDMAALNVLPP---TVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFP 188 (586)
T ss_pred hhhH-----HHH---H-HHHHHHHHHHHHHhCCCCC---cccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccccc
Confidence 2211 111 1 2567889999999998765 23355567888899999999999999999999998753100
Q ss_pred ccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeeccc
Q 005849 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKY 317 (674)
Q Consensus 238 ~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~ 317 (674)
..|..|+|..-..+
T Consensus 189 ----------------------------------------------------~~YgKL~G~~~~~~-------------- 202 (586)
T KOG2007|consen 189 ----------------------------------------------------HSYGKLVGQRKNLQ-------------- 202 (586)
T ss_pred ----------------------------------------------------chhhhhcCchhhcc--------------
Confidence 12445555331111
Q ss_pred ccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccc
Q 005849 318 VDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRV 397 (674)
Q Consensus 318 V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~ 397 (674)
.|.|..-..---.++||++++..+
T Consensus 203 ----~gEg~l~ds~KR~p~DFALWKAsK---------------------------------------------------- 226 (586)
T KOG2007|consen 203 ----EGEGVLSDSRKRSPADFALWKASK---------------------------------------------------- 226 (586)
T ss_pred ----cCcCccccccCCChhhhhhhhhcC----------------------------------------------------
Confidence 122221112224567777775422
Q ss_pred ccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCc
Q 005849 398 PRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKE 477 (674)
Q Consensus 398 p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~ 477 (674)
.|+.. | ...||..-|-|++||.
T Consensus 227 ----------------------------------~gEP~-------------------W----eSPWG~GRPGWHIECS- 248 (586)
T KOG2007|consen 227 ----------------------------------PGEPS-------------------W----ESPWGKGRPGWHIECS- 248 (586)
T ss_pred ----------------------------------CCCCC-------------------C----CCCCCCCCCCceeeeH-
Confidence 11211 2 4579999999999871
Q ss_pred ccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHH
Q 005849 478 EEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARM 557 (674)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~ 557 (674)
.+--..+| . ..|++-+|.|+-|+|.-+.
T Consensus 249 ----------------------------------------aMas~~lG------~------~lDIH~GG~DL~FPHHeNE 276 (586)
T KOG2007|consen 249 ----------------------------------------AMASAILG------S------QLDIHGGGIDLAFPHHENE 276 (586)
T ss_pred ----------------------------------------HHHHHhhc------c------ccceecCcccccCCCcccH
Confidence 01111111 1 2489999999999999999
Q ss_pred HHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHH
Q 005849 558 VMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTN 637 (674)
Q Consensus 558 ~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~ 637 (674)
++.+.+.....++-++|+|.-.+..+|+|||||++|+|+++|++++|+|++||++++++.++++++|+.+.|..+.++..
T Consensus 277 iAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~ 356 (586)
T KOG2007|consen 277 IAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEK 356 (586)
T ss_pred HHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHH
Confidence 99999988888899999985555589999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHH
Q 005849 638 KLWNAGKFI 646 (674)
Q Consensus 638 kl~n~~~f~ 646 (674)
.+.|++.-+
T Consensus 357 ~~~~ff~~~ 365 (586)
T KOG2007|consen 357 SLNNFFLDV 365 (586)
T ss_pred HHHHHHHHH
Confidence 888887543
|
|
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=261.84 Aligned_cols=133 Identities=20% Similarity=0.265 Sum_probs=108.4
Q ss_pred CCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCC
Q 005849 78 QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK 157 (674)
Q Consensus 78 ~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~ 157 (674)
...|+......+++++|..++|||||+|||||+|+.+++|+++|++|+.||+|.++.|+|++|.++...++.. +.
T Consensus 99 ~~~~g~~~~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~----~~- 173 (507)
T PRK01611 99 GERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASL----EL- 173 (507)
T ss_pred hhhcCCCcCCCCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHH----HH-
Confidence 3567765444567899999999999999999999999999999999999999999999999998865444321 11
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHcCceE-Ecccce
Q 005849 158 RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIY-QGSYMV 229 (674)
Q Consensus 158 ~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy-~~~~~v 229 (674)
...++++.+.+.+++++++|||.+| |.+ +.+..+...+++++++|.++|++| +....+
T Consensus 174 -----------~~~~~~~~~~~~~~~~l~~LgI~~D~~~~---es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~ 233 (507)
T PRK01611 174 -----------LWRKAVDISLDEIKEDLDRLGVHFDVWFS---ESELYYNGKVDEVVEDLKEKGLLYVESDGAL 233 (507)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHcCCeeeEEee---cCcchhcchHHHHHHHHHHCCCEEEeeCCcE
Confidence 2235678899999999999999999 544 445556678999999999999999 655544
|
|
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=247.60 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=81.3
Q ss_pred CcceeEEeehhhh-hHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcC-
Q 005849 539 PTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG- 616 (674)
Q Consensus 539 P~d~~~~G~Dii~-~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~- 616 (674)
-+|+-..|+|+.. .|.....+....+....|+. ++||++++.+|+|||||+||+|++.|+++.+++|++|||++..
T Consensus 234 ~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~ 311 (510)
T PRK00750 234 GVDFEPFGKDHASASYDTSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARP 311 (510)
T ss_pred CCCEEeeCcccCcchHHHHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCC
Confidence 4688899999999 88776665554666777854 7899999777999999999999999999999999999888754
Q ss_pred CCCCccccCHHHHHHHHHHHHHHHHHH
Q 005849 617 TAGQDLSLSIERLTANKAFTNKLWNAG 643 (674)
Q Consensus 617 ~~~~d~~fs~~~l~~~~~~~~kl~n~~ 643 (674)
++.++++|+. +..+.+-+.++.+.+
T Consensus 312 ~~~~~~~f~~--l~~~~dey~rl~~~~ 336 (510)
T PRK00750 312 KPAKRLDFDV--IPKLVDEYDRFERKY 336 (510)
T ss_pred CCCCCCcccH--HHHHHHHHHHHHHHH
Confidence 4599999998 666555555555443
|
|
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-21 Score=216.33 Aligned_cols=98 Identities=14% Similarity=0.178 Sum_probs=73.8
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCC--------CchhHHHHHHHHHHcCCCcccc
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA--------GIATQLVVEKMLAAEGIKRVEL 161 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~--------Gl~~e~~ve~~~~~~g~~~~~l 161 (674)
++++|++|.+ |||.+||||++..+.+|+++|++|++|++|.+++|+|++ ++| +...+-.|.+...+
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p-----~~~~~ylG~Pl~~v 91 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP-----EELETYLGMPLTRI 91 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc-----HHHHHhCCCcceec
Confidence 3699999977 999999999999999999999999999999999999999 233 11111124332222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005849 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWT 195 (674)
Q Consensus 162 ~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~ 195 (674)
.+ .|- .+..|++++...+.+.|..||+.+++-
T Consensus 92 pd-p~g-~~~s~~~h~~~~~~~~l~~~gi~~e~~ 123 (515)
T TIGR00467 92 PD-PEG-CKTSYAEHFLIPFLESLPVLGINPEFI 123 (515)
T ss_pred CC-CCC-CcHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 11 110 134788999999999999999988854
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=213.80 Aligned_cols=141 Identities=20% Similarity=0.252 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHH----
Q 005849 78 QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAA---- 153 (674)
Q Consensus 78 ~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~---- 153 (674)
...|+..... +++++|..++|||+|+|||||+|+.+++|+++|++++.||+|....-..+.|..+-..+.-....
T Consensus 101 ~~~~g~~~~~-~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~ 179 (566)
T TIGR00456 101 KEDYGSKKLK-NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEK 179 (566)
T ss_pred ccccCCCCCC-CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCcc
Confidence 3567765443 67899999999999999999999999999999999999999998776666665432222111000
Q ss_pred ------------------------cCCCcc----------ccCHHHHHHHHHHH-HHHHHHHHHHHHHHhccccC-CC--
Q 005849 154 ------------------------EGIKRV----------ELSRDEFTKRVWEW-KEKYGGTITSQIKRLGASCD-WT-- 195 (674)
Q Consensus 154 ------------------------~g~~~~----------~l~~e~f~~~~~~~-~~~~~~~~~~~l~~lgi~~D-w~-- 195 (674)
...... +-++++.. .+|+. ++...+.+++++++|||.+| |.
T Consensus 180 ~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~-~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E 258 (566)
T TIGR00456 180 LNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAI-KLWKRLVEYSLEGIKETLARLNIHFDSFVWE 258 (566)
T ss_pred ccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHcCCceeeeecc
Confidence 000000 01111222 35544 45566779999999999999 54
Q ss_pred CccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 196 RERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 196 ~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
.+.+ +...+..++++|.++|++|++
T Consensus 259 ~e~~-----~~~~~~~v~~~L~~~g~~~~~ 283 (566)
T TIGR00456 259 GESV-----KNGMVPKVLEDLKEKGLVVED 283 (566)
T ss_pred cccc-----ccccHHHHHHHHHHCCCEEEc
Confidence 3222 445688999999999999976
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-21 Score=188.75 Aligned_cols=129 Identities=37% Similarity=0.657 Sum_probs=99.6
Q ss_pred eeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhh---------------------------------hccCc
Q 005849 252 TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYS---------------------------------QFIGM 298 (674)
Q Consensus 252 ~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~---------------------------------~l~G~ 298 (674)
.-..++|++.+.+..|.|+||||+||+|.+.|++.|+++.-+ -+.|.
T Consensus 8 ~G~~i~F~i~~~~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~~~l~~fi~~~~~~~~~~~~~~~~~k~Gv~tg~ 87 (185)
T PF13603_consen 8 EGAEIDFKIKGSNEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENNPELQEFIEKCKKIKNSERNKDFKEKEGVFTGL 87 (185)
T ss_dssp EEEEEEEEBTTSSCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTHHHHHHHHHHHHTS-HHHHHHCSSS--EEEEEE
T ss_pred ccEEEEEEecCCCCEEEEEECCcchhhCceEEEECCCCHHHHhhhhhhhhHHHHHHHHhcCCHhHhhhhccccccCcCCC
Confidence 357889999998889999999999999999999999997321 13578
Q ss_pred EEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccC----------------CCcccccc
Q 005849 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK----------------DGTLNEVA 362 (674)
Q Consensus 299 ~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~----------------~G~~~e~~ 362 (674)
.+.||++ ++++||+.++||.+++|||+||.||+|+++|+++|++|+||+..++.. +|.++ ++
T Consensus 88 ~aihP~t-~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS 165 (185)
T PF13603_consen 88 YAIHPLT-GKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NS 165 (185)
T ss_dssp EEE-TTT-S-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE--SS
T ss_pred EEECCCC-CCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eC
Confidence 8999996 899999999999999999999999999999999999999998877642 35565 78
Q ss_pred cccCCCCHHHHHHHHHHHHH
Q 005849 363 GLFRGLDRFEARKKLWSDLE 382 (674)
Q Consensus 363 g~~~g~~~~~ar~~i~~~L~ 382 (674)
|.|.||+..+|+++|++.|+
T Consensus 166 ~~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 166 GEFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp GGGTTSBHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999885
|
... |
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-20 Score=205.69 Aligned_cols=154 Identities=23% Similarity=0.318 Sum_probs=109.4
Q ss_pred HHHHHHHHHHh-CCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHH
Q 005849 67 SEERIYNWWES-QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQL 145 (674)
Q Consensus 67 ~E~~~~~~W~~-~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~ 145 (674)
..+.+++...+ ...|+......+++++|...+|||+|+|||||+|+.+++|+++|-++..||+|....-.++.|..+-.
T Consensus 93 ~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~ 172 (577)
T COG0018 93 LAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGM 172 (577)
T ss_pred HHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHH
Confidence 56778888887 45565665556789999999999999999999999999999999999999999998777777754321
Q ss_pred HHH----------------------------HHHHHcCCCcc-ccCHHHHHH--------HHHH-HHHHHHHHHHHHHHH
Q 005849 146 VVE----------------------------KMLAAEGIKRV-ELSRDEFTK--------RVWE-WKEKYGGTITSQIKR 187 (674)
Q Consensus 146 ~ve----------------------------~~~~~~g~~~~-~l~~e~f~~--------~~~~-~~~~~~~~~~~~l~~ 187 (674)
.+- +.+.+ ..... +..++.+.+ ..|+ +++.....|++++.+
T Consensus 173 l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~-~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~ 251 (577)
T COG0018 173 LALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEE-DPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDR 251 (577)
T ss_pred HHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHh-CcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 11111 01100 112221110 3343 466677889999999
Q ss_pred hccccC-C--CCccccCChhHHHHHHHHHHHHHHcCceEEcc
Q 005849 188 LGASCD-W--TRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (674)
Q Consensus 188 lgi~~D-w--~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~ 226 (674)
||+.+| | +.+.+ +...+..++..|.++|++|+..
T Consensus 252 l~V~fD~~~~E~e~~-----~~~~~~~vv~~L~~~~~~~e~~ 288 (577)
T COG0018 252 LGVKFDVYDSEGESF-----YNGKVEKVVEDLEEKGLLYEDD 288 (577)
T ss_pred hCcccceeeccchhh-----hcccHHHHHHHHHhcCCEeeeC
Confidence 999999 5 33333 4457999999999999999943
|
|
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-18 Score=193.38 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=103.4
Q ss_pred CCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCC
Q 005849 78 QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK 157 (674)
Q Consensus 78 ~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~ 157 (674)
...|+.....++++++|...+|||+|+|||||+|+.+++|+++|-++..||+|....-..+.|..+-..+... .+.|..
T Consensus 101 ~~~~g~~~~~~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~-~~~~~~ 179 (562)
T PRK12451 101 KEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAY-KKWGNE 179 (562)
T ss_pred HhhcCCCccCCCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHH-HHhCCc
Confidence 3457755433467899999999999999999999999999999999999999999988888887654333211 111211
Q ss_pred --cc-------------------------ccCHHHHH---------HHHHHH-HHHHHHHHHHHHHHhccccCCCCcccc
Q 005849 158 --RV-------------------------ELSRDEFT---------KRVWEW-KEKYGGTITSQIKRLGASCDWTRERFT 200 (674)
Q Consensus 158 --~~-------------------------~l~~e~f~---------~~~~~~-~~~~~~~~~~~l~~lgi~~Dw~~~~~T 200 (674)
+. +..++.+. ..+|++ ++...+.+++++++|||.+||..
T Consensus 180 ~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~---- 255 (562)
T PRK12451 180 AVVKEDPIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ---- 255 (562)
T ss_pred cccccCchHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeec----
Confidence 00 00011111 123444 45556779999999999999332
Q ss_pred CChhHHHHHHHHHHHHHHcCceEEcccce
Q 005849 201 LDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 201 ~~~~~~~~v~~~f~~L~~kGliy~~~~~v 229 (674)
-+..|...+..++++|.++|++|+....+
T Consensus 256 ~es~~~~~~~~v~~~L~~~g~~~e~dGa~ 284 (562)
T PRK12451 256 GEAFYNDLMEDFIGILEEHDLLEESEGAL 284 (562)
T ss_pred chHhhhhhHHHHHHHHHHCCCEEecCCeE
Confidence 22346667899999999999999876543
|
|
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=172.75 Aligned_cols=122 Identities=18% Similarity=0.177 Sum_probs=105.3
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
+++|...+|||||+|||||+|+++++|+++||+|++|++|.+..++|++|.+++..++... .+
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-----------------~~ 63 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-----------------KW 63 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-----------------HH
Confidence 4689999999999999999999999999999999999999999999999999766553321 14
Q ss_pred HHHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPN 234 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~ 234 (674)
+++++.+.+.+++++++|||.+| |.+ +.+ +...++.++++|.++|++|+....+++|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~L~i~~d~~~~---es~--~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~ 123 (212)
T cd00671 64 RKLVEESIKADLETYGRLDVRFDVWFG---ESS--YLGLMGKVVELLEELGLLYEEDGALWLDLT 123 (212)
T ss_pred HHHHHHHHHHHHHHHHHhCCcCceecc---hhh--hhhHHHHHHHHHHHCCCEEEeCCcEEEech
Confidence 57788899999999999999999 665 333 378899999999999999999988877754
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-17 Score=183.48 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=95.8
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCC--Ccc------
Q 005849 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGI--KRV------ 159 (674)
Q Consensus 88 ~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~--~~~------ 159 (674)
++++++|...+|||+|+|||||+|+.+++|+++|.++..||+|....-..+.|..+-..+.......+. .++
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 194 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGD 194 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHH
Confidence 357899999999999999999999999999999999999999999888888886654333221111110 000
Q ss_pred -------------------cc----------CHHHHHHHHHHH-HHHHHHHHHHHHHHhccccC-CCCccccCChhHHHH
Q 005849 160 -------------------EL----------SRDEFTKRVWEW-KEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRA 208 (674)
Q Consensus 160 -------------------~l----------~~e~f~~~~~~~-~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~ 208 (674)
+. ++++.. .+|+. .+.....+++++.+|||.+| +.. ..|...
T Consensus 195 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~-~lw~~~~~~~~~~~~~~y~~l~V~fd~~ge------s~y~~~ 267 (576)
T PLN02286 195 LQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYR-AAWAKICEISRREFEKVYQRLRVELEEKGE------SFYNPY 267 (576)
T ss_pred HHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHhCCeeeecCc------hhhhhh
Confidence 00 111111 23433 44455679999999999999 322 235566
Q ss_pred HHHHHHHHHHcCceEEcccce
Q 005849 209 VVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 209 v~~~f~~L~~kGliy~~~~~v 229 (674)
+..++.+|.++|++|+....+
T Consensus 268 ~~~vi~~L~~~g~~~e~dGa~ 288 (576)
T PLN02286 268 IPGVIEELESKGLVVESDGAR 288 (576)
T ss_pred HHHHHHHHHHCCCEEeeCCce
Confidence 799999999999999876543
|
|
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.6e-17 Score=173.90 Aligned_cols=150 Identities=25% Similarity=0.325 Sum_probs=95.1
Q ss_pred HhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHH---HH--
Q 005849 76 ESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVE---KM-- 150 (674)
Q Consensus 76 ~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve---~~-- 150 (674)
+++..| ......+++++|...+|||+|+|||||+|+.+++|+|+|-++..||+|....-..+.|..+-..+. +.
T Consensus 7 ~~~~~y-~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~ 85 (354)
T PF00750_consen 7 EKGEEY-GSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGD 85 (354)
T ss_dssp HHGGGT-T--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHH
T ss_pred hcchhc-ccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhh
Confidence 345556 444456788999999999999999999999999999999999999999999888888875432211 00
Q ss_pred ----------------------HHHcCC---Ccccc---CHHHHHH------HHHH-HHHHHHHHHHHHHHHhccccC-C
Q 005849 151 ----------------------LAAEGI---KRVEL---SRDEFTK------RVWE-WKEKYGGTITSQIKRLGASCD-W 194 (674)
Q Consensus 151 ----------------------~~~~g~---~~~~l---~~e~f~~------~~~~-~~~~~~~~~~~~l~~lgi~~D-w 194 (674)
+..... ...++ .++.+.+ ...+ |.....+.++++|+++++.+| |
T Consensus 86 ~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~ 165 (354)
T PF00750_consen 86 EELLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVW 165 (354)
T ss_dssp HHTSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEE
T ss_pred hhhcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 000101 01111 1111111 1222 333366778999999999999 5
Q ss_pred CCccccCChhHHHHHHHHHHHHHHcCceEEcccce
Q 005849 195 TRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 195 ~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v 229 (674)
..+ .+-.+...+..++++|.++|++|+....+
T Consensus 166 ~~E---~Es~~~~~v~~vl~~L~e~g~~~~~dGa~ 197 (354)
T PF00750_consen 166 FDE---SESFYSGKVDEVLERLKEKGLLYESDGAL 197 (354)
T ss_dssp EEH---CHHHHTTHHHHHHHHHHCTTTEEEETTEE
T ss_pred ccc---chhhhhhHHHHHHHHHHhCCcEEecCCcE
Confidence 432 23336677899999999999999866543
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-14 Score=152.02 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=48.6
Q ss_pred cceeEEeehhhh---hHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcC
Q 005849 540 TTMLETGHDILF---FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 616 (674)
Q Consensus 540 ~d~~~~G~Dii~---~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~ 616 (674)
+|+-..|+|..- .+-..--+.--.+....| .-+.-.++++..|+|||||+||+++++|+++-+.+++|||+++..
T Consensus 235 VdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP--~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~ 312 (360)
T PF01921_consen 235 VDFEPFGKDHASPGGSYDTSKRIAREILGYEPP--VPFPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMART 312 (360)
T ss_dssp -SEEEEEHHHHCTTSHHHHHHHHHHHCC-------EEEEE--EEES--------------HHHHHTTS-HHHHHHHHHCS
T ss_pred ceeccCCCccCCCCCChhhHHHHHHHHhCCCCC--CCCCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHccc
Confidence 456667999876 454333322234555556 457788999777779999999999999999999999999999999
Q ss_pred CCCCccccCHH-HHHHHHHHHHHH
Q 005849 617 TAGQDLSLSIE-RLTANKAFTNKL 639 (674)
Q Consensus 617 ~~~~d~~fs~~-~l~~~~~~~~kl 639 (674)
.|.+..+|+.+ .+-...+-..++
T Consensus 313 ~P~~~~~~~~~~~i~~~~Deyd~~ 336 (360)
T PF01921_consen 313 KPNKAKDFSFDLVIPRLYDEYDRL 336 (360)
T ss_dssp -TTS-EEE--STTHHHHHHHHHHH
T ss_pred CCCcceEeccCcchHHHHHHHHHH
Confidence 99776777766 454433333333
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-11 Score=131.29 Aligned_cols=100 Identities=17% Similarity=0.260 Sum_probs=74.3
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC--------chhHHHHHHHHHHcCCCcccc
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--------IATQLVVEKMLAAEGIKRVEL 161 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~G--------l~~e~~ve~~~~~~g~~~~~l 161 (674)
..++|.+| -.|+|.+|||+++-.+.+|+++|-+|.+|+.|.+++=+|+.. +|-+...++. .|++..++
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Y---lg~Plt~I 94 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQY---LGMPLTEI 94 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHH---cCCccccC
Confidence 67999999 699999999999999999999999999999999999998875 1211222222 24443333
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005849 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWT 195 (674)
Q Consensus 162 ~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~ 195 (674)
.. .|- -|..|++++...+.+-|..+|+.+.|-
T Consensus 95 Pd-P~G-~~~Sya~hf~~~f~~~l~~~Gi~~E~~ 126 (521)
T COG1384 95 PD-PFG-CCDSYAEHFLRPFEEFLDEFGIEVEFV 126 (521)
T ss_pred CC-Ccc-ccchHHHHHHHHHHHHHHhcCCceEEE
Confidence 21 010 244678899999999999999877743
|
|
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-11 Score=117.23 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=63.1
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 005849 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (674)
Q Consensus 95 ~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~ 174 (674)
+.+.|||||+|||||+++++++|+++||+|++|++|.++.|+|++|.++... +.+.+.+++ +++
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~----a~~~~~~~~------------~~~ 65 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDP----ANKKGENAK------------AFV 65 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHH----HHhcCCCHH------------HHH
Confidence 4567999999999999999999999999999999999999999999885443 344455554 566
Q ss_pred HHHHHHHHHHHH
Q 005849 175 EKYGGTITSQIK 186 (674)
Q Consensus 175 ~~~~~~~~~~l~ 186 (674)
+.+.+.++++++
T Consensus 66 ~~~~~~~~~~~~ 77 (143)
T cd00802 66 ERWIERIKEDVE 77 (143)
T ss_pred HHHHHHHHHHHH
Confidence 777777777777
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-09 Score=122.49 Aligned_cols=97 Identities=25% Similarity=0.281 Sum_probs=69.6
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|+|||.||||||++.++.+.+|| +|...++.=+|+.--.+ .+
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~-------------~R-------------- 149 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT-------------KR-------------- 149 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc-------------cc--------------
Confidence 44556799999999999999999999999 34444444444432110 00
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+ +|+.. +...++.+...+...+|.++|++|..
T Consensus 150 ~~~e~~~~I~edL~wLGl--~wD~~--~~qSdr~~~y~~~a~~Li~~G~AY~C 198 (567)
T PRK04156 150 PDPEAYDMILEDLKWLGV--KWDEV--VIQSDRLEIYYEYARKLIEMGGAYVC 198 (567)
T ss_pred chHHHHHHHHHHHHHcCC--CCCCc--cCcccCHHHHHHHHHHHHHcCCCccC
Confidence 013455789999999998 55544 34556778889999999999999965
|
|
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.9e-09 Score=118.13 Aligned_cols=95 Identities=24% Similarity=0.244 Sum_probs=65.9
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++.-.+|| ...|.-++.+=-+ ++. +.
T Consensus 3 ~~RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLRieDt--------------------D~~------------R~ 48 (470)
T TIGR00464 3 RTRFAPSPTGYLHIGGARTALFNYLFAK--HTGGEFILRIEDT--------------------DLE------------RN 48 (470)
T ss_pred eEeeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcC--------------------CCc------------cC
Confidence 3455699999999999999999999998 3344333332222 221 11
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+..| +.+|+. .++.+..+++..+|.++|++|..
T Consensus 49 ~~~~~~~i~~~L~wlGl~~d-e~~~~Q--S~r~~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 49 IEEAEEAILEGLKWLGISWD-EGPYYQ--SQRLDIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred ChHHHHHHHHHHHHCCCCCC-CCeeeh--hCCHHHHHHHHHHHHHcCCEEec
Confidence 24567789999999998544 134332 23456678889999999999975
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. |
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=114.46 Aligned_cols=95 Identities=24% Similarity=0.227 Sum_probs=67.1
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.|||||+|+.++.-.+|| ...|.-++.+=-+ ++. +
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar--~~~G~fiLRieDt--------------------D~~------------R 50 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFAR--HHGGKFILRIEDT--------------------DQE------------R 50 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcC--------------------CCC------------C
Confidence 45556799999999999999999999998 2344333332222 221 1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCc--------cccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRE--------RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~--------~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
....+.+.|.++|+.||+..| .. |+ ..++.+..++...+|.++|++|..
T Consensus 51 ~~~~~~~~i~~~L~wlGl~~D--e~p~~~~~gpy~--QS~r~~~y~~~~~~L~~~g~aY~C 107 (476)
T PRK01406 51 STEEAEEAILEGLKWLGLDWD--EGPDGGPYGPYR--QSERLDIYKEYAEQLLEEGKAYYC 107 (476)
T ss_pred CChHHHHHHHHHHHHCCCCCC--CCCccCCCCcee--hhcCHHHHHHHHHHHHHcCCeeec
Confidence 224567789999999998655 32 33 233457788999999999999974
|
|
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.7e-08 Score=108.69 Aligned_cols=94 Identities=29% Similarity=0.358 Sum_probs=66.0
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
.+-.+|.|||.|||||+|+.++.-.+|| ...|.-++.+=-+| ++ ..
T Consensus 4 r~RFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD--------------------~~------------Rs 49 (445)
T PRK12558 4 ITRFAPSPTGYLHVGNARTALLNWLYAR--KHGGKFILRIDDTD--------------------LE------------RS 49 (445)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeccCC--------------------cc------------cc
Confidence 4455699999999999999999888887 23343333322222 11 12
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
.+++.+.|+++|++||+.+| .. ....+....+++++.+|.++|++|..
T Consensus 50 ~~~~~~~I~e~L~wLGI~~D--e~--y~QSer~~~y~~~~e~L~e~G~AY~C 97 (445)
T PRK12558 50 KQEYADAIAEDLKWLGINWD--RT--FRQSDRFDRYDEAAEKLKAAGRLYPC 97 (445)
T ss_pred hHHHHHHHHHHHHHcCCCCC--cc--ccHHHHHHHHHHHHHHHHHCCCEEEe
Confidence 25677789999999999877 21 22333446789999999999999875
|
|
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=105.96 Aligned_cols=97 Identities=23% Similarity=0.260 Sum_probs=72.0
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
.-+++-.||.|||.||||||++.++.+.+|| ...| .++.=+|+.- +..
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G---~~iLRidDTD-----------------p~R---------- 139 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKG---KLIIRFDDTD-----------------PRR---------- 139 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCC---EEEEEeCcCC-----------------ccc----------
Confidence 3467777799999999999999999999997 2334 3444344432 110
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| .. +...+|.....+...+|.++|++|..
T Consensus 140 --~~~e~~~~I~edL~wLGi~~d--~~--~~qSd~~~~y~~~a~~Li~~G~AY~C 188 (560)
T TIGR00463 140 --VKPEAYDMILEDLDWLGVKGD--EV--VYQSDRIEEYYDYCRKLIEMGKAYVC 188 (560)
T ss_pred --ccHHHHHHHHHHHHHcCCCCC--cc--ccccccHHHHHHHHHHHHHcCCceee
Confidence 113577789999999998754 33 45566788899999999999999986
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). |
| >PLN03233 putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-07 Score=102.38 Aligned_cols=95 Identities=27% Similarity=0.415 Sum_probs=70.7
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.||.|||.||||||++.++...+|| ...|.-++.. |+ .+++ +
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar--~~gG~~iLRi---ED-----------------TDp~------------R 57 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYAR--RYKGRLILRF---DD-----------------TNPS------------K 57 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEE---CC-----------------CCCC------------c
Confidence 66777799999999999999999999998 3445444332 22 2222 1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| ..+ ...++.+...+...+|.++|++|..
T Consensus 58 ~~~e~~~~I~~dL~WLGl~wD--~~~--~qSdr~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 58 EKAEFEESIIEDLGKIEIKPD--SVS--FTSDYFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred cchHHHHHHHHHHHHhCCCCC--CCc--cccccHHHHHHHHHHHHHcCCeEec
Confidence 124677889999999998644 443 3445677889999999999999986
|
|
| >PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-07 Score=102.46 Aligned_cols=91 Identities=15% Similarity=0.219 Sum_probs=65.5
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Q 005849 97 PPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEK 176 (674)
Q Consensus 97 ~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~ 176 (674)
..|.|||.|||||+++.++.-.+|| ...|.-++.+=-+| +. +...+
T Consensus 4 FAPSPTG~LHiG~artAL~n~l~Ar--~~gG~fiLRiEDTD--------------------~~------------R~~~e 49 (433)
T PRK12410 4 FAPSPTGDMHIGNLRAAIFNYIVAK--QQNEDFLIRIEDTD--------------------KE------------RNIEG 49 (433)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCC--------------------CC------------cCChH
Confidence 4599999999999999999999998 34444343332222 21 11245
Q ss_pred HHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 177 YGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 177 ~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
+.+.|.++|+.||+. |+..|+. .++.+...+..++|.++|.+|..
T Consensus 50 ~~~~I~~~L~WlGl~--wDe~y~Q--SeR~~~Y~~~a~~Li~~G~AY~C 94 (433)
T PRK12410 50 KDKEILEILNLFGIS--WDKLVYQ--SENLKFHRQMAEKLLSEKKAFAC 94 (433)
T ss_pred HHHHHHHHHHHcCCC--CCCCeeh--hccHHHHHHHHHHHHHcCCeeee
Confidence 677899999999985 4455543 33456778899999999999975
|
|
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.8e-07 Score=103.67 Aligned_cols=108 Identities=24% Similarity=0.384 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCc
Q 005849 79 GYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKR 158 (674)
Q Consensus 79 ~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~ 158 (674)
+.|+.........=+++-.||.|||.||||||++.++...+|| ...|.-++.. |+. ++
T Consensus 200 ~~~~~~L~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~---eDT-----------------dp 257 (722)
T PLN02907 200 GSFEVDLPGAEEGKVCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRF---DDT-----------------NP 257 (722)
T ss_pred ccccccCccCCCCceEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEe---cCC-----------------CC
Confidence 4454443333223367777899999999999999999999998 4455444332 222 22
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 159 VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 159 ~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
.. ...++.+.|.++|+.||+..| ..+ ...+|.....+...+|.++|++|.
T Consensus 258 ~r------------~~~e~~~~I~~dl~wLG~~~d--~~~--~qS~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 258 SK------------ESDEFVENILKDIETLGIKYD--AVT--YTSDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred Cc------------CChHHHHHHHHHHHHcCCCCC--Ccc--cccccHHHHHHHHHHHHHcCCeee
Confidence 11 124677889999999998655 443 345567788999999999999997
|
|
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-06 Score=97.75 Aligned_cols=96 Identities=24% Similarity=0.352 Sum_probs=67.0
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.||.|||.||||||++.++...+||- ..|.-++.. |+. ++..
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLRi---eDT-----------------d~~r------------ 75 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLRF---DDT-----------------NPEK------------ 75 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---CCC-----------------CCCc------------
Confidence 567777999999999999999999999983 345433332 322 2211
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| +..++ ..++.....+...+|.++|++|..
T Consensus 76 ~~~e~~~~I~~dL~wLGi~~d-~~~~~--qS~r~~~~y~~a~~Li~~G~AY~c 125 (554)
T PRK05347 76 EDQEYVDSIKEDVRWLGFDWS-GELRY--ASDYFDQLYEYAVELIKKGKAYVD 125 (554)
T ss_pred CChHHHHHHHHHHHHcCCCCC-CCcee--eecCHHHHHHHHHHHHHcCCEeeC
Confidence 114677889999999998665 22332 334445555666899999999986
|
|
| >cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.77 E-value=4e-07 Score=92.16 Aligned_cols=89 Identities=25% Similarity=0.268 Sum_probs=61.8
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.||+||+++.++.-.+||- ..|.-++.+=-+| +. +.
T Consensus 3 ~~RFAPsPtG~lHlG~~r~al~n~l~Ar~--~~G~~iLRieDtD--------------------~~------------R~ 48 (230)
T cd00418 3 VTRFAPSPTGYLHIGHARTALFNFAFARK--YGGKFILRIEDTD--------------------PE------------RS 48 (230)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEeCcCC--------------------CC------------CC
Confidence 44557999999999999999999999983 3444433322222 21 11
Q ss_pred HHHHHHHHHHHHHHhccccCCCC-ccccCChhHHHHHHHHHHHHHHcC
Q 005849 174 KEKYGGTITSQIKRLGASCDWTR-ERFTLDEQLSRAVVEAFIRLHEKG 220 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~-~~~T~~~~~~~~v~~~f~~L~~kG 220 (674)
..++.+.|.++|+.||+..| . .++ ..++.+..++..++|.++|
T Consensus 49 ~~~~~~~I~~dL~wlGl~wd--~~~~~--QS~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 49 RPEYVESILEDLKWLGLDWD--EGPYR--QSDRFDLYRAYAEELIKKG 92 (230)
T ss_pred ChHHHHHHHHHHHHcCCCCC--CCeee--hhcCHHHHHHHHHHHHHcC
Confidence 24577789999999998555 4 333 3345667788888999988
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind |
| >PRK14895 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-07 Score=102.67 Aligned_cols=95 Identities=25% Similarity=0.297 Sum_probs=67.8
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-..|.|||.|||||+++.++.-.+|| ...|.=++.+=-+|. . +.
T Consensus 6 rtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~--------------------~------------R~ 51 (513)
T PRK14895 6 ITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDK--------------------E------------RS 51 (513)
T ss_pred eEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc--------------------c------------cc
Confidence 4455699999999999999999999999 445554444333322 1 12
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+..| ..+|+.+ +......+..++|.++|++|..
T Consensus 52 ~~~~~~~i~~~L~WLGl~wD-e~py~QS--eR~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 52 TKEAVEAIFSGLKWLGLDWN-GEVIFQS--KRNNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred ChHHHHHHHHHHHHcCCCCC-CCceeEe--CcHHHHHHHHHHHHHcCCeEEe
Confidence 24567789999999998544 1344432 2456788999999999999976
|
|
| >PLN02627 glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-06 Score=95.60 Aligned_cols=95 Identities=22% Similarity=0.259 Sum_probs=67.5
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-..|.|||.|||||+|+.++.-.+|| ...|.-++.+=-+|. . +
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~--------------------~------------R 91 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDL--------------------A------------R 91 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC--------------------C------------C
Confidence 45555689999999999999999999999 445544444322222 1 1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCc---------cccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRE---------RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~---------~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| .. |+ -.++.+...+..++|.++|++|..
T Consensus 92 ~~~e~~~~I~~~L~WLGl~wD--egp~~gg~~gpy~--QSeR~~~Y~~~a~~Li~~G~AY~C 149 (535)
T PLN02627 92 STKESEEAVLRDLKWLGLDWD--EGPDVGGEYGPYR--QSERNAIYKQYAEKLLESGHVYPC 149 (535)
T ss_pred CChHHHHHHHHHHHHcCCCCC--cCcccCCCCCCee--eeccHHHHHHHHHHHHHcCCeeec
Confidence 124567789999999997554 32 22 233456778899999999999964
|
|
| >PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.5e-06 Score=97.00 Aligned_cols=96 Identities=24% Similarity=0.323 Sum_probs=70.1
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.||.|||.||||||++.++...+|| +..|.-++. +|+. ++..
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~--~~~G~~~LR---~eDT-----------------d~~r------------ 77 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIAR--DYGGRCHLR---MDDT-----------------NPET------------ 77 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---eCCC-----------------CCCc------------
Confidence 67778899999999999999999999998 334533333 2332 2221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| .. .+...+|.....+...+|.++|++|..
T Consensus 78 ~~~e~~~~I~~dl~wLG~~wd--~~-~~~qS~~~~~y~~~a~~Li~~G~aY~c 127 (771)
T PRK14703 78 EDTEYVEAIKDDVRWLGFDWG--EH-LYYASDYFERMYAYAEQLIKMGLAYVD 127 (771)
T ss_pred CChHHHHHHHHHHHHcCCCCC--CC-ceEeecCHHHHHHHHHHHHHcCCcccC
Confidence 114677889999999998655 32 133455777888899999999999975
|
|
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-07 Score=94.36 Aligned_cols=95 Identities=21% Similarity=0.230 Sum_probs=69.5
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++.+++|| ++.+.++.-+|+.--+. ++ .
T Consensus 3 ~~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r------------~~---------------~ 50 (240)
T cd09287 3 VMRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRT------------KR---------------P 50 (240)
T ss_pred eEeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCc------------cc---------------c
Confidence 3445699999999999999999999999 56666666666543210 00 1
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
...+.+.|.++|+.||+ +|+..+ .-.++.+..+++.++|.++|++|.
T Consensus 51 ~~~~~~~i~~dL~wLGl--~~d~~~--~qS~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 51 DPEAYDMIPEDLEWLGV--KWDEVV--IASDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred hHHHHHHHHHHHHHcCC--CCCCcc--chhccHHHHHHHHHHHHHcCCccc
Confidence 13445568999999999 555443 344567778888999999999997
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-05 Score=85.43 Aligned_cols=159 Identities=16% Similarity=0.226 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC------------
Q 005849 67 SEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP------------ 134 (674)
Q Consensus 67 ~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~------------ 134 (674)
++.-.+..|++...|+.+....+++.+|...+||.+.+.|+||.|+.+++-+++.-++..|++|..+.
T Consensus 87 ~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll 166 (567)
T KOG1195|consen 87 IKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLL 166 (567)
T ss_pred HHHHHHHHHHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHH
Confidence 57778999999999998865567899999999999999999999999999999999999999998852
Q ss_pred --CCCCCCc-------hhHHHHHHH-----HHHcCCCccccCHHHHH---------HHHHH-HHHHHHHHHHHHHHHhcc
Q 005849 135 --GTDHAGI-------ATQLVVEKM-----LAAEGIKRVELSRDEFT---------KRVWE-WKEKYGGTITSQIKRLGA 190 (674)
Q Consensus 135 --G~D~~Gl-------~~e~~ve~~-----~~~~g~~~~~l~~e~f~---------~~~~~-~~~~~~~~~~~~l~~lgi 190 (674)
||...|- |++...+.. .++...+..+..++-|. -+.|+ +.+.-+....+...|||+
T Consensus 167 ~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v 246 (567)
T KOG1195|consen 167 ALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNV 246 (567)
T ss_pred hccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhce
Confidence 5555554 333222111 11222222222222222 13343 445556667788999999
Q ss_pred ccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEcccce
Q 005849 191 SCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 191 ~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v 229 (674)
.|| |.-+ +.-+.+..+.+...+...|++....+..
T Consensus 247 ~FD~y~gE----Sqv~~e~~~~~~d~~rs~~l~~e~dG~~ 282 (567)
T KOG1195|consen 247 KFDEYSGE----SQVSNEKMQEALDLLRSANLTEEIDGTI 282 (567)
T ss_pred eeeeccch----HHHHHHHHHHHHHHHHhcCCcccCCCcE
Confidence 999 4322 2347788999999999999776665544
|
|
| >cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.1e-06 Score=83.25 Aligned_cols=93 Identities=26% Similarity=0.310 Sum_probs=67.5
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.||+||+++.++.-.+||- ..|.-++. +| ..++. +.
T Consensus 3 ~~RFAPsPtG~lHlG~~~~al~~~l~Ar~--~~G~~iLR---ie-----------------DtD~~------------R~ 48 (238)
T cd00807 3 VTRFPPEPNGYLHIGHAKAILLNFGYAKK--YGGRCNLR---FD-----------------DTNPE------------KE 48 (238)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ec-----------------CCCCc------------cc
Confidence 45567999999999999999999999983 34433322 22 22222 12
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
..++.+.|.++|+.||+..| ..+ ...++.+..++...+|.++|++|.
T Consensus 49 ~~~~~~~I~~dL~wlGl~wD--~~~--~QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 49 EEEYVDSIKEDVKWLGIKPY--KVT--YASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred chHHHHHHHHHHHHcCCCCC--Cce--ecccCHHHHHHHHHHHHHcCCeec
Confidence 24567789999999998655 433 344566788999999999999999
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.5e-06 Score=86.17 Aligned_cols=94 Identities=21% Similarity=0.194 Sum_probs=67.5
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 005849 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (674)
Q Consensus 95 ~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~ 174 (674)
+-.+|.|||.|||||+++.++.-.+|| +..|.=++.+=-+|. . +..
T Consensus 3 ~RFAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~--------------------~------------R~~ 48 (272)
T TIGR03838 3 GRFAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDP--------------------P------------REV 48 (272)
T ss_pred eeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC--------------------C------------CCC
Confidence 345699999999999999999999999 445554444333332 1 112
Q ss_pred HHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 175 ~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
.++.+.|.++|+.||+..| .... ...++.+...++.++|.++|++|.-
T Consensus 49 ~~~~~~I~~dL~wLGl~wD--e~~~-~QS~r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 49 PGAADDILRTLEAYGLHWD--GEVV-YQSQRHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred hHHHHHHHHHHHHcCCCCC--CCee-eeeCCHHHHHHHHHHHHHcCCEEec
Confidence 4567789999999998555 3211 2334567788999999999999976
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. |
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.9e-06 Score=92.19 Aligned_cols=97 Identities=26% Similarity=0.420 Sum_probs=70.0
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~ 171 (674)
-+++-.||.|||.||||||++.++...+|| ...|.-++. +|+ .++..
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar--~~gG~~iLR---iED-----------------TDp~R----------- 98 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLAD--KYKGKLVFR---FDD-----------------TNPSK----------- 98 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---EcC-----------------CCCcc-----------
Confidence 366777799999999999999999999998 334543333 222 22221
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+ +|+.. .+...+|.....+...+|.++|++|-.
T Consensus 99 -~~~e~~d~IleDL~WLGl--~wDe~-~~~QSdr~d~y~e~a~~Li~~G~AY~c 148 (601)
T PTZ00402 99 -EKEHFEQAILDDLATLGV--SWDVG-PTYSSDYMDLMYEKAEELIKKGLAYCD 148 (601)
T ss_pred -cCHHHHHHHHHHHHHCCC--CCCCc-eeeccccHHHHHHHHHHHHHcCCEEEe
Confidence 124677889999999998 55442 123445778889999999999999943
|
|
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.2e-06 Score=95.36 Aligned_cols=96 Identities=25% Similarity=0.295 Sum_probs=70.2
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.||||||++.++.-.+|| ...|.-++.+= ..+++.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar--~~~G~fiLRiE--------------------DTD~~R------------ 55 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYAR--KYGGKFILRIE--------------------DTDPER------------ 55 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHH--HhCCEEEEEec--------------------CCCCCC------------
Confidence 67777799999999999999999999999 33444443322 222221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+ +|+.. .....++.....+...+|.++|++|..
T Consensus 56 ~~~e~~~~I~~~L~WLGl--~wde~-~~~QS~r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 56 ETPEAEDAILEDLEWLGL--DWDEG-PYYQSERFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred CCHHHHHHHHHHHHhcCC--CCCCc-eeehhhhHHHHHHHHHHHHHCCCeEEe
Confidence 124567789999999997 55553 123445677888999999999999976
|
|
| >PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.1e-06 Score=88.06 Aligned_cols=95 Identities=25% Similarity=0.347 Sum_probs=63.0
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++.-.+|| +..|.-++.+=-+|. . ..
T Consensus 3 ~tRFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~--------------------~------------R~ 48 (314)
T PF00749_consen 3 RTRFAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP--------------------E------------RC 48 (314)
T ss_dssp EEEE---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST--------------------T------------TC
T ss_pred eEeeCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc--------------------c------------cc
Confidence 3445699999999999999999999998 455544444322222 1 11
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+..|. .+| ...++.+..++..++|.++|++|.-
T Consensus 49 ~~~~~~~i~~~L~wlGl~~D~-~~~--~QS~r~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 49 RPEFYDAILEDLRWLGLEWDY-GPY--YQSDRLEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp HHHHHHHHHHHHHHHT---ST-CEE--EGGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred hhhHHHHHHhheeEEEEecCC-eEE--eHHHHHHHHHHHHHHHhhcCCCccc
Confidence 245677899999999987772 333 3455677889999999999999975
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A .... |
| >PTZ00437 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=90.48 Aligned_cols=96 Identities=23% Similarity=0.235 Sum_probs=68.0
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.||.|||.||||||++.++...+||. ..|.-++.. |+. ++..
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~--~gG~~iLRi---EDT-----------------Dp~r------------ 97 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARA--HGGKCYLRY---DDT-----------------NPET------------ 97 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---CCC-----------------Cccc------------
Confidence 456666999999999999999999999984 345443332 222 2221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~ 226 (674)
...++.+.|.++|+.||+..| ..+ ...+|.+...+...+|.++|++|...
T Consensus 98 ~~~e~~~~I~~dL~wLGi~~D--~~~--~qS~y~~~~ye~A~~Li~~G~AY~C~ 147 (574)
T PTZ00437 98 EEQVYIDAIMEMVKWMGWKPD--WVT--FSSDYFDQLHEFAVQLIKDGKAYVDH 147 (574)
T ss_pred cChHHHHHHHHHHHHcCCCCC--CCC--cCchhHHHHHHHHHHHHHcCCEEEcC
Confidence 124677889999999998655 332 33456566667778999999999863
|
|
| >TIGR00440 glnS glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.2e-05 Score=90.21 Aligned_cols=96 Identities=24% Similarity=0.344 Sum_probs=67.3
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.||.|||.||||||++.++...+|| ...|.-++.. |+. ++. +.
T Consensus 2 ~tRFaPsPtG~LHiG~ar~al~n~~~A~--~~~G~~iLRi---eDT-----------------d~~------------r~ 47 (522)
T TIGR00440 2 HTRFPPEPNGYLHIGHAKSICLNFGYAK--YYNGTCNLRF---DDT-----------------NPV------------KE 47 (522)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEE---cCC-----------------Ccc------------cC
Confidence 4556799999999999999999999998 3455444332 322 121 11
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~ 226 (674)
..++.+.|.++|+.||+..| +..++ ..++.....+...+|.++|++|...
T Consensus 48 ~~e~~~~I~~dL~wLG~~~d-~~~~~--qS~~~~~~~~~a~~Li~~G~AY~c~ 97 (522)
T TIGR00440 48 DPEYVESIKRDVEWLGFKWE-GKIRY--SSDYFDELYRYAEELIKKGLAYVDE 97 (522)
T ss_pred ChHHHHHHHHHHHHcCCCCC-CCceE--ccccHHHHHHHHHHHHHcCCEEeec
Confidence 24677889999999998655 22222 3345555667779999999999864
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. |
| >KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.1e-05 Score=82.55 Aligned_cols=147 Identities=18% Similarity=0.307 Sum_probs=96.4
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC----CCchhHHHHHHH-------------
Q 005849 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH----AGIATQLVVEKM------------- 150 (674)
Q Consensus 88 ~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~----~Gl~~e~~ve~~------------- 150 (674)
..++.+|.+.+||.-..+|+||+|+.+++|.++|-....|++|+...-.-+ +|+-|+...++.
T Consensus 186 ~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDL 265 (656)
T KOG4426|consen 186 SVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDL 265 (656)
T ss_pred ceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhH
Confidence 357899999999999999999999999999999999999999999743333 344333322210
Q ss_pred --HHHcCCCccccCHHHHHHH-----------------HHHH-HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHH
Q 005849 151 --LAAEGIKRVELSRDEFTKR-----------------VWEW-KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210 (674)
Q Consensus 151 --~~~~g~~~~~l~~e~f~~~-----------------~~~~-~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~ 210 (674)
.-++.+.+-+ .+|+|.++ .|.. ++--...+....++|.|++-=.- +.-|+..+.
T Consensus 266 QvFYkeSKkrFD-~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~G-----ESFYq~~m~ 339 (656)
T KOG4426|consen 266 QVFYKESKKRFD-EDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKERG-----ESFYQDRMA 339 (656)
T ss_pred HHHHHHHHhccC-cCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhcc-----hhhhhhHHH
Confidence 0011111111 12455542 2222 23233446667888888776222 334778889
Q ss_pred HHHHHHHHcCceEEccc-ceeccCCCCcccc
Q 005849 211 EAFIRLHEKGLIYQGSY-MVNWSPNLQTAVS 240 (674)
Q Consensus 211 ~~f~~L~~kGliy~~~~-~v~w~p~~~t~ls 240 (674)
++++.|..+|++...+. .+.|-+.|.-+|.
T Consensus 340 ~vveel~~kglvee~~Gr~i~f~~g~~IPLt 370 (656)
T KOG4426|consen 340 EVVEELKSKGLVEEDDGRRIMFPEGCDIPLT 370 (656)
T ss_pred HHHHHHhcCCceeecCCceEeccCCCCcceE
Confidence 99999999999998764 5567666655443
|
|
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.2e-05 Score=82.66 Aligned_cols=96 Identities=24% Similarity=0.265 Sum_probs=66.5
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.|||||+++.++.-.+||- ..|.=++.+ |+ .++. +
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~--~~G~~iLRi---ED-----------------tD~~------------R 51 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALGSWLDARA--HGGRWLLRI---ED-----------------IDPP------------R 51 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEE---Cc-----------------CCCC------------c
Confidence 445566999999999999999999999883 234333322 22 1111 1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| ...|+ -.++.+..+++.++|.++|++|.-
T Consensus 52 ~~~~~~~~I~~dL~wlGl~wD-e~~~~--QS~r~~~Y~~~~~~L~~~G~aY~C 101 (299)
T PRK05710 52 EVPGAADAILADLEWLGLHWD-GPVLY--QSQRHDAYRAALDRLRAQGLVYPC 101 (299)
T ss_pred cchHHHHHHHHHHHHCCCCCC-CCceE--eeccHHHHHHHHHHHHHCCCceec
Confidence 124567789999999998544 12333 334567889999999999999975
|
|
| >PLN02859 glutamine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.2e-05 Score=88.22 Aligned_cols=96 Identities=22% Similarity=0.285 Sum_probs=65.5
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.||.|||.||||||++.++...+||. ..|.-.+.. |+. ++..
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~--~~G~~~LRi---eDT-----------------dp~r------------ 310 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGCCYLRF---DDT-----------------NPEA------------ 310 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe---cCC-----------------CCCc------------
Confidence 566777999999999999999999999995 345433332 322 2221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~ 226 (674)
...++.+.|.++|+.||+ +|+..+++ .+|.+...+.-.+|.++|++|...
T Consensus 311 ~~~e~~~~I~edL~WLG~--~~d~~~~q--Sd~f~~~Y~~A~~Li~~G~AY~C~ 360 (788)
T PLN02859 311 EKKEYIDHIEEIVEWMGW--EPFKITYT--SDYFQELYELAVELIRRGHAYVDH 360 (788)
T ss_pred cchHHHHHHHHHHHHcCC--CCCCcccc--cHhHHHHHHHHHHHHHcCCeEecc
Confidence 124677889999999995 56554433 333322333457799999999853
|
|
| >KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00019 Score=78.63 Aligned_cols=99 Identities=22% Similarity=0.377 Sum_probs=72.6
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.||-|+|.||||||...++---+|- +.+| ..++-+|+.- | .+
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLNqYfa~--~~~G---~LIvRFDDTN-P----------------aK------------ 246 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLNQYFAQ--AYQG---KLIVRFDDTN-P----------------AK------------ 246 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHHHHHHH--hcCc---eEEEEecCCC-c----------------ch------------
Confidence 45566799999999999998776433321 1233 3445566643 1 11
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccce
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v 229 (674)
-.++|.+.|.+++..|||..| .+|+..+|-..+...-.+|.+.|.+|-+..|+
T Consensus 247 E~~eFe~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 247 ENEEFEDVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred hhHHHHHHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 015677889999999999988 45778889888999999999999999988765
|
|
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00031 Score=71.83 Aligned_cols=89 Identities=24% Similarity=0.227 Sum_probs=60.3
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++.-.+|| +..|.-++.+=-+|. . +.
T Consensus 3 ~~RfAPsPtG~LHlG~~~~al~n~l~ar--~~~G~~ilRieDtd~--------------------~------------r~ 48 (239)
T cd00808 3 RTRFAPSPTGFLHIGGARTALFNYLFAR--KHGGKFILRIEDTDQ--------------------E------------RS 48 (239)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEEEECcCCC--------------------C------------CC
Confidence 3445699999999999999999999888 334533322222221 1 01
Q ss_pred HHHHHHHHHHHHHHhccccCCCC---------ccccCChhHHHHHHHHHHHHHHcC
Q 005849 174 KEKYGGTITSQIKRLGASCDWTR---------ERFTLDEQLSRAVVEAFIRLHEKG 220 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~---------~~~T~~~~~~~~v~~~f~~L~~kG 220 (674)
..++.+.|.++|..||+..| . .|... ...+....+.++|.++|
T Consensus 49 ~~~~~~~i~~dL~wlGl~~d--~~~~~~g~~~~~~QS--~r~~~y~~~~~~L~~~g 100 (239)
T cd00808 49 VPEAEEAILEALKWLGLDWD--EGPDVGGPYGPYRQS--ERLEIYRKYAEKLLEKG 100 (239)
T ss_pred chHHHHHHHHHHHHcCCCCC--cCCccCCCCCCEeee--CCHHHHHHHHHHHHHcC
Confidence 13566788999999997544 4 34433 35667788889999998
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0023 Score=71.04 Aligned_cols=96 Identities=24% Similarity=0.277 Sum_probs=61.2
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~ 171 (674)
=+++-.||-|||.|||||+-..-+-=-+|++ +.|..-+. +|+. .|+..
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~cyLR---fDDT-----------------NPEkE---------- 295 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVCYLR---FDDT-----------------NPEKE---------- 295 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhhhh--hCCeEEEe---cCCC-----------------Ccchh----------
Confidence 3667778999999999999754443333332 23322211 2332 22211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
.++|-..|++....||. ...-.|++.+|-...-+.-.+|+++|++|..
T Consensus 296 --ee~yf~sI~e~V~WLG~----~P~kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764)
T KOG1148|consen 296 --EEEYFESIKEMVAWLGF----EPYKVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764)
T ss_pred --hHHHHHHHHHHHHHhCC----CceeeecchhHHHHHHHHHHHHHhcCceeEE
Confidence 14677788888999984 2323488777766666666889999999964
|
|
| >KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0098 Score=64.22 Aligned_cols=132 Identities=19% Similarity=0.202 Sum_probs=88.5
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHH
Q 005849 96 MPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKE 175 (674)
Q Consensus 96 ~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~ 175 (674)
-.-|-|||.||+|-+|+...-=++|| ...|.-++.+=-+|--- .+.
T Consensus 37 RFAPSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq~R--------------------------------~v~ 82 (524)
T KOG1149|consen 37 RFAPSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQKR--------------------------------LIR 82 (524)
T ss_pred eecCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEeccccccc--------------------------------ccc
Confidence 33489999999999999988777777 44565555554444321 111
Q ss_pred HHHHHHHHHHHHhccccCCCC----ccccC-ChhHHHHHHHHHHHHHHcCceEEcc----------------ccee-ccC
Q 005849 176 KYGGTITSQIKRLGASCDWTR----ERFTL-DEQLSRAVVEAFIRLHEKGLIYQGS----------------YMVN-WSP 233 (674)
Q Consensus 176 ~~~~~~~~~l~~lgi~~Dw~~----~~~T~-~~~~~~~v~~~f~~L~~kGliy~~~----------------~~v~-w~p 233 (674)
...++|.++|+.+|+..|=.. +|-.+ -.+..+..++..++|.+.|.+|+-. ..++ |+-
T Consensus 83 gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~ 162 (524)
T KOG1149|consen 83 GSEEAIYEDLKWANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDR 162 (524)
T ss_pred chHHHHHHHHHhcCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccc
Confidence 223457888999998777211 12111 2234566778888999999999842 2233 443
Q ss_pred CCCcccccchhhccCCCCeeEEEEEeecC
Q 005849 234 NLQTAVSDLEVEYSEEPGTLYYIKYRVAG 262 (674)
Q Consensus 234 ~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~ 262 (674)
+| .-+|++||+-....|+.+-+.|+++.
T Consensus 163 kc-a~ls~~ei~~~lakg~pf~iRFrl~~ 190 (524)
T KOG1149|consen 163 KC-ANLSDAEIKQKLAKGTPFTIRFRLPK 190 (524)
T ss_pred hh-cccCHHHHHHHHhcCCCeeEEEecCC
Confidence 33 46889999988888999999999865
|
|
| >PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.015 Score=64.45 Aligned_cols=59 Identities=19% Similarity=0.114 Sum_probs=40.7
Q ss_pred CCcceeEEeehhhhhHHH-HHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhH
Q 005849 538 YPTTMLETGHDILFFWVA-RMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDT 600 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~~-~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dl 600 (674)
+.+|+.+.|.||...... +-++ --+....| ..+.+.++...+|.|||||.||+||..|=
T Consensus 185 ~~~~iq~gG~DQ~~ni~~grdl~--~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 185 EDVDLQIGGTDQWGNILMGRDLQ--RKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred CCCCEEEecHHHHHHHHHHHHHH--HHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccCC
Confidence 478999999999764322 2222 22333445 34556777789999999999999997664
|
|
| >cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.049 Score=57.12 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=46.6
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcC-CCCcceeEeeeeEeCCCCccccccCCCccCh-------hhHHh----hh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTG-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP-------IDTIK----EF 604 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~-~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~-------~dll~----~y 604 (674)
+.+|+...|.||.... +.+-++-- +.+ ..| ..+++.++..++|.|||||.+|.++. .++-+ .+
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r--~n~~~~p--~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~dsp~~i~~ki~~a~ 227 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARR--FNGFTIA--EGLTIPLVTKLDGPKFGKSESGPKWLDTEKTSPYEFYQFWINAV 227 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHH--hCCCCCC--eEEeeccccCCCCCcCCCCCCCCccccccCCCHHHHHHHHHccc
Confidence 4568999999997533 33333322 222 234 34556888899999999999999864 33333 24
Q ss_pred ChhHHHHHHhc
Q 005849 605 GADALRFTISL 615 (674)
Q Consensus 605 gaD~lR~~l~~ 615 (674)
..++++++-+.
T Consensus 228 d~~v~~~~~~~ 238 (273)
T cd00395 228 DSDVINILKYF 238 (273)
T ss_pred HhHHHHHHHHH
Confidence 56666665443
|
Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.021 Score=63.31 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=40.3
Q ss_pred cCCcceeEEeehhhhhHH-HHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhh
Q 005849 537 FYPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 537 ~~P~d~~~~G~Dii~~w~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
-+.+|+.+.|.||..... .+-++-. +..+.+| .+...++...+|+|||||.||+|+..|
T Consensus 186 ~~~~~i~~gG~DQ~~ni~~grdla~r--~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 186 RYGCDLQLGGSDQWGNILSGRDLQRR--YGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDE 245 (408)
T ss_pred cCCCCEEeccHHHHHHHHHHHHHHHH--hCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCC
Confidence 357999999999986432 2233322 2233332 245566778899999999999999877
|
|
| >cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.036 Score=58.05 Aligned_cols=53 Identities=23% Similarity=0.112 Sum_probs=37.3
Q ss_pred cceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccC
Q 005849 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596 (674)
Q Consensus 540 ~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~ 596 (674)
.|+...|.||.... +.+-++-.. ....| -.+.|.++...+|+|||||.+|.+|
T Consensus 152 ~~l~~~G~DQ~~~i~~~rd~a~r~--~~~~~--~~l~~~ll~~l~G~KMSKS~~~~~~ 205 (269)
T cd00805 152 VDLQLGGSDQRGNITLGRDLIRKL--GYKKV--VGLTTPLLTGLDGGKMSKSEGNAIW 205 (269)
T ss_pred CCeeEecHHHHHHHHHHHHHHHHh--CCCCc--EEEeeccccCCCCCcccCCCCCccc
Confidence 48999999997543 233333222 23334 3467888889999999999999995
|
Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.046 Score=57.87 Aligned_cols=63 Identities=22% Similarity=0.173 Sum_probs=40.7
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCc-cccccCCC-ccChhhH
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKTLGN-VIDPIDT 600 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~-KMSKS~gN-~i~~~dl 600 (674)
+-+|+.+.|.||.... +++-++-.+......|-...+++.++..++|. |||||.+| .|++.|-
T Consensus 148 l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 148 LKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp TTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred eccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEecc
Confidence 3467999999997643 33334333322211122256777788889999 99999999 8887664
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A .... |
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.065 Score=50.33 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=34.2
Q ss_pred cceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccC
Q 005849 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTL 591 (674)
Q Consensus 540 ~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~ 591 (674)
.++++.|.||.. ++.....+...+....+ ...+.+|++...+|+|||||+
T Consensus 94 ~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~-p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 94 CDIHLGGSDQLG-HIELGLELLKKAGGPAR-PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred cEEEEechhHHH-HHHHHHHHHHHhCCCCC-ceEEEeCCeECCCCCcCCCCC
Confidence 589999999987 44444444444433322 255667899877889999995
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.088 Score=64.35 Aligned_cols=79 Identities=22% Similarity=0.428 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcCCccccccc--------------ccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceE
Q 005849 372 EARKKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 437 (674)
Q Consensus 372 ~ar~~i~~~L~~~g~~~~~~~~--------------~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~ 437 (674)
+.-..+...|-++|++.+.+.. +...+.|+|||.+++.+...|||++++++++++++.++. +.
T Consensus 212 ~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~--~~- 288 (963)
T PLN02563 212 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDD--LD- 288 (963)
T ss_pred HHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhh--cC-
Confidence 4556677788888876654332 122456899999999999999999999999999999974 44
Q ss_pred echhHHHHHHHHHhcC
Q 005849 438 MPERFEKIYNHWLSNI 453 (674)
Q Consensus 438 ~P~~~~~~~~~~l~~l 453 (674)
+|++.++.-.+||-.-
T Consensus 289 wp~~v~~~q~nwiG~s 304 (963)
T PLN02563 289 WPESIKEMQRNWIGRS 304 (963)
T ss_pred CCHHHHHHHHHhcccc
Confidence 6999999999998543
|
|
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.076 Score=57.22 Aligned_cols=59 Identities=31% Similarity=0.430 Sum_probs=37.4
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhh--hc--CCCCcceeE--eeeeEeCCCCccccccCCCccCh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIE--FT--GSVPFSHVY--LHGLIRDSQGRKMSKTLGNVIDP 597 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~--~~--~~~Pf~~v~--~hg~v~d~~G~KMSKS~gN~i~~ 597 (674)
|.+|+...|.||...+ +++-++-.+- +. -..| ..++ .+.++..++|+|||||.+|.|..
T Consensus 148 ~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P-~~~~~~~~~~l~gLdg~KMSKS~~n~I~L 213 (332)
T PRK12556 148 FQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP-EYVIQEEGAILPGLDGRKMSKSYGNVIPL 213 (332)
T ss_pred ccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc-eeccccccccccCCCCCCCCCCCCCcccc
Confidence 4578999999998533 5555543221 11 1234 2222 25566678999999999998854
|
|
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.45 Score=48.82 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=50.4
Q ss_pred CcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHh-hhChhHHHHHHhcCC
Q 005849 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK-EFGADALRFTISLGT 617 (674)
Q Consensus 539 P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~-~ygaD~lR~~l~~~~ 617 (674)
-++-.+-|.|++- +..+...+.-++.-..| .+..++.+++.+|.||||+.|+ .++..+.+ .+.+.+++-|++...
T Consensus 118 ~ithViRG~D~~~-~t~~q~~l~~aLg~~~p--~~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG 193 (239)
T cd00808 118 GITHVIRGEEHLS-STPKQILLYEALGWEPP--KFAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLG 193 (239)
T ss_pred CCCEEEEChhhhh-ChHHHHHHHHHcCCCCC--ceEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcC
Confidence 3566788988653 22333333333333334 4556677788999999999999 56777654 478999999987644
Q ss_pred C
Q 005849 618 A 618 (674)
Q Consensus 618 ~ 618 (674)
.
T Consensus 194 ~ 194 (239)
T cd00808 194 W 194 (239)
T ss_pred C
Confidence 4
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.078 Score=62.98 Aligned_cols=81 Identities=26% Similarity=0.416 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCcccccccccc--------------cccccCCCCcccceeeccccccchHHHHHHHHHHHhCCce-Ee
Q 005849 374 RKKLWSDLEETGLAVKKEPHTLR--------------VPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT-IM 438 (674)
Q Consensus 374 r~~i~~~L~~~g~~~~~~~~~~~--------------~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~-~~ 438 (674)
-+-+...|.++|++.+.+....= .-.|||||.+++.+..+|||++++++.+++++.+.. .. ..
T Consensus 137 ~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~--l~~~w 214 (814)
T COG0495 137 IQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDK--LATLW 214 (814)
T ss_pred HHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhh--hccCC
Confidence 34577788899987664433222 234899999999999999999999999999988763 44 58
Q ss_pred chhHHHHHHHHHhcCCCc
Q 005849 439 PERFEKIYNHWLSNIKDW 456 (674)
Q Consensus 439 P~~~~~~~~~~l~~l~DW 456 (674)
|++.+..-.+||..-..-
T Consensus 215 PE~Vk~mq~nWIg~s~g~ 232 (814)
T COG0495 215 PETVKGMQRNWIGPSEGY 232 (814)
T ss_pred chhHHHHHHcCcCCCCCe
Confidence 999999999999654433
|
|
| >PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.1 Score=56.32 Aligned_cols=58 Identities=26% Similarity=0.217 Sum_probs=41.2
Q ss_pred CCcceeEEeehhhhh-HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCc--cccccC-CCccChhh
Q 005849 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR--KMSKTL-GNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~-w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~--KMSKS~-gN~i~~~d 599 (674)
+.+|+...|.||... =+++-++-. ++...| ..+.|.++..++|. |||||. +|+|++.|
T Consensus 167 ~~ad~vpvG~DQ~~h~~l~Rdia~~--~n~~~p--~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 167 LDVDIAVGGMDQRKIHMLAREVLPK--LGYKKP--VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred hCCCEEEechhHHHHHHHHHHhhHh--cCCCCc--eEEEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 467899999999753 244444322 233445 45668888889987 999999 99998755
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.17 Score=61.44 Aligned_cols=81 Identities=31% Similarity=0.490 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHcCCcccccccc---------------cccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCce
Q 005849 372 EARKKLWSDLEETGLAVKKEPHT---------------LRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (674)
Q Consensus 372 ~ar~~i~~~L~~~g~~~~~~~~~---------------~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~ 436 (674)
++-..+...|-++|++.+.+... ....+|+|||.+++.+..+|||++++++++++++.++. ..
T Consensus 130 ~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~--~~ 207 (842)
T TIGR00396 130 KWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEE--LD 207 (842)
T ss_pred HHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhh--hc
Confidence 45566778888888754322211 11257999999999999999999999999999999975 45
Q ss_pred EechhHHHHHHHHHhcCC
Q 005849 437 IMPERFEKIYNHWLSNIK 454 (674)
Q Consensus 437 ~~P~~~~~~~~~~l~~l~ 454 (674)
.+|++.++...+||..-.
T Consensus 208 ~wp~~v~~~q~~wig~s~ 225 (842)
T TIGR00396 208 HWPESVKEMQRNWIGKSE 225 (842)
T ss_pred cccHHHHHHHHhcccccc
Confidence 699999999999985433
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.12 Score=57.21 Aligned_cols=60 Identities=25% Similarity=0.341 Sum_probs=38.1
Q ss_pred CCcceeEEeehhhh-hHHHHHHHHhhhh-cC----CCCcceeEe--eeeEeCCCCccccccCCCccChh
Q 005849 538 YPTTMLETGHDILF-FWVARMVMMGIEF-TG----SVPFSHVYL--HGLIRDSQGRKMSKTLGNVIDPI 598 (674)
Q Consensus 538 ~P~d~~~~G~Dii~-~w~~~~~~~~~~~-~~----~~Pf~~v~~--hg~v~d~~G~KMSKS~gN~i~~~ 598 (674)
|-+|+...|.||.. .-+++-++...-. .+ ..| ..++. +..+..++|+|||||.+|.|...
T Consensus 147 y~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~P-e~~i~~~~~~I~gLdg~KMSKS~~n~I~L~ 214 (431)
T PRK12284 147 FNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLP-EAVIEESVATLPGLDGRKMSKSYDNTIPLF 214 (431)
T ss_pred cCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCC-ccccccccccccCCCCccccCCCCCEeeec
Confidence 45788999999984 4455555433211 11 134 22332 34677889999999999999543
|
|
| >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.15 Score=55.10 Aligned_cols=63 Identities=25% Similarity=0.288 Sum_probs=38.7
Q ss_pred cCCcceeEEeehhhhh-HHHHHHHHhhhhcCCCCc----ceeEe-eeeEeCCCC-ccccccCCCccChhh
Q 005849 537 FYPTTMLETGHDILFF-WVARMVMMGIEFTGSVPF----SHVYL-HGLIRDSQG-RKMSKTLGNVIDPID 599 (674)
Q Consensus 537 ~~P~d~~~~G~Dii~~-w~~~~~~~~~~~~~~~Pf----~~v~~-hg~v~d~~G-~KMSKS~gN~i~~~d 599 (674)
.|.+|+...|.||... =+++-++-.+......|+ ..++. |.++..++| .|||||.+|.|...|
T Consensus 140 ~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 140 AFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 3568999999999753 355555533321111121 11221 446667777 899999999998644
|
|
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.18 Score=55.14 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=39.2
Q ss_pred CcceeEEeehhhhh-HHHHHHHHhh--hhcCCCCcceeEeeeeEeCCCCccccccC-CCccChhh
Q 005849 539 PTTMLETGHDILFF-WVARMVMMGI--EFTGSVPFSHVYLHGLIRDSQGRKMSKTL-GNVIDPID 599 (674)
Q Consensus 539 P~d~~~~G~Dii~~-w~~~~~~~~~--~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~-gN~i~~~d 599 (674)
-.++...|.||... =+++-++-.+ .+.-..| ..+.|.++..++|.|||||. +|.|.+.|
T Consensus 203 ~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P--~~l~~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 203 KPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKP--SSTYHKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CceEEEeccchHHHHHHHHHHHHHHhhhcCCCCc--hhHhhhcccCCCCCcCCCCCCCCeeeccC
Confidence 45788999999753 3555554333 0112345 34556788889999999998 67888655
|
|
| >TIGR00233 trpS tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.17 Score=54.55 Aligned_cols=60 Identities=23% Similarity=0.259 Sum_probs=37.1
Q ss_pred CCcceeEEeehhhhh-HHHHHHHHhhh--hc--CCCCcceeEeeee---EeCCCCccccccCCC-ccChhh
Q 005849 538 YPTTMLETGHDILFF-WVARMVMMGIE--FT--GSVPFSHVYLHGL---IRDSQGRKMSKTLGN-VIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~-w~~~~~~~~~~--~~--~~~Pf~~v~~hg~---v~d~~G~KMSKS~gN-~i~~~d 599 (674)
+-+|+...|.||... =+++-++-.+. +. -..| ..++|.+ +..++|+|||||.+| .|.+.|
T Consensus 138 ~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P--~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 138 YQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKP--ESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred cCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCC--hhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 346899999999753 35555543332 10 1345 3445544 445667899999997 777644
|
This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model. |
| >PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.3 Score=53.66 Aligned_cols=59 Identities=24% Similarity=0.203 Sum_probs=37.3
Q ss_pred CCcceeEEeehhh-hhHHHHHHHHhhhhcCCCCcceeEeeeeEeCC-CC-ccccccCCC-ccChhh
Q 005849 538 YPTTMLETGHDIL-FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDS-QG-RKMSKTLGN-VIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii-~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~-~G-~KMSKS~gN-~i~~~d 599 (674)
+.+|+...|.||. ++=+++-++-.+.. ...| .+..|.++..+ +| +|||||.+| +|...|
T Consensus 209 l~adivpvG~DQ~~~~~LaRdia~~~~~-~~~~--~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 209 LKADICQLGMDQRKVNMLAREYCDKKKI-KKKP--IILSHHMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHhCC-CCCc--eeecccccccCCCCCCCCCcCCCCCeecCCC
Confidence 4578999999995 44455554433211 1123 34456778777 45 799999987 577544
|
|
| >cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.29 Score=51.56 Aligned_cols=59 Identities=24% Similarity=0.205 Sum_probs=38.7
Q ss_pred CcceeEEeehhhhhH-HHHHHHHhhhhc----CCCCcceeEee--eeEeCCCC--ccccccCC-CccChhh
Q 005849 539 PTTMLETGHDILFFW-VARMVMMGIEFT----GSVPFSHVYLH--GLIRDSQG--RKMSKTLG-NVIDPID 599 (674)
Q Consensus 539 P~d~~~~G~Dii~~w-~~~~~~~~~~~~----~~~Pf~~v~~h--g~v~d~~G--~KMSKS~g-N~i~~~d 599 (674)
-+++...|.||.... +++-++-.+... -..| ..++| .++..++| .|||||.+ |.|+..|
T Consensus 137 ~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P--~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 137 KACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKP--AALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred cCCEEeeccccHHHHHHHHHHHHHhccccccccCCC--eeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 458888899997532 444443322210 1234 56667 77877777 49999999 9998876
|
Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding |
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.24 Score=52.58 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=38.0
Q ss_pred CcceeEEeehhhhhH-HHHHHHHhhhh--c--CCCCcceeEeee--eEeCCCC-ccccccCCC-ccChh
Q 005849 539 PTTMLETGHDILFFW-VARMVMMGIEF--T--GSVPFSHVYLHG--LIRDSQG-RKMSKTLGN-VIDPI 598 (674)
Q Consensus 539 P~d~~~~G~Dii~~w-~~~~~~~~~~~--~--~~~Pf~~v~~hg--~v~d~~G-~KMSKS~gN-~i~~~ 598 (674)
-+++..-|.||..-+ +.|-++-..-. . -..| ..++|. .+..++| +|||||.+| +|...
T Consensus 145 ~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P--~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~ 211 (314)
T COG0180 145 QATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLP--EALISKVARLPGLDGPGKMSKSDPNSAIFLL 211 (314)
T ss_pred cCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCc--cccccCCCcccCCCCCCcccccCCCCeeecc
Confidence 356777899987432 44444432220 1 1234 567777 8888999 899999999 77653
|
|
| >TIGR00234 tyrS tyrosyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.41 Score=52.63 Aligned_cols=58 Identities=19% Similarity=0.127 Sum_probs=36.9
Q ss_pred CcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhH
Q 005849 539 PTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDT 600 (674)
Q Consensus 539 P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dl 600 (674)
-+|+.+.|.||...- ..+.++.-. ..+.+| .+...++...+|.|||||.||.||.++-
T Consensus 177 ~~di~~gG~DQ~~ni~~g~dLar~~--~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~~ 235 (377)
T TIGR00234 177 NVDLQIGGSDQWGNIRKGRDLIRRN--LPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLDEG 235 (377)
T ss_pred cCCeeEecchhHHHHHHHHHHHHHh--cCCCce--eeceeeecCCCCCCccCCCCCcccCCcc
Confidence 368999999996532 222222222 223332 2444566667899999999999998653
|
This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples. |
| >KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.29 Score=55.91 Aligned_cols=75 Identities=27% Similarity=0.445 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCcccccccccc---------------cccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEe
Q 005849 374 RKKLWSDLEETGLAVKKEPHTLR---------------VPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 438 (674)
Q Consensus 374 r~~i~~~L~~~g~~~~~~~~~~~---------------~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~ 438 (674)
.+-|.-.|-+.|++-..|....= .-.+||||.++|.+...||||+++++++++++.++ ...=+
T Consensus 160 TQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~--~L~~W 237 (876)
T KOG0435|consen 160 TQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLE--TLPEW 237 (876)
T ss_pred HHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHH--hhhhh
Confidence 34455566677765544432222 23479999999999999999999999999999997 34345
Q ss_pred chhHHHHHHHHHh
Q 005849 439 PERFEKIYNHWLS 451 (674)
Q Consensus 439 P~~~~~~~~~~l~ 451 (674)
|+ .++.-.+||-
T Consensus 238 ~~-vk~mQrnWIG 249 (876)
T KOG0435|consen 238 PE-VKDMQRNWIG 249 (876)
T ss_pred hh-HHHHHHhhcc
Confidence 66 7788888884
|
|
| >COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.44 Score=52.45 Aligned_cols=56 Identities=16% Similarity=0.066 Sum_probs=36.7
Q ss_pred CcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccCh
Q 005849 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 597 (674)
Q Consensus 539 P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~ 597 (674)
-.|+.++|.||-+.+....=+.-- +....+ ..+++.++...+|.|||||.||++|.
T Consensus 180 ~~dlq~GG~DQ~~ni~~grdl~rr-~g~~~~--~~lt~PLL~~ldG~KmgKs~~~a~~~ 235 (401)
T COG0162 180 NKDLQLGGSDQWGNILAGRDLIRR-LGQKKV--VGLTTPLLTGLDGKKMGKSEGGAVWL 235 (401)
T ss_pred ccchhcCChHHHHHHHHHHHHHHH-hCCCCe--EEEEeccccCCCCCcccccCCCceEc
Confidence 367899999997665432211111 222223 35666788899999999999996653
|
|
| >PRK00927 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=87.80 E-value=0.45 Score=51.45 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=38.3
Q ss_pred CCcceeEEeehhhhh-HHHHHHHHhhhhc-C---CCCcceeEe-e-eeEeCCCCc--cccccCC---CccChhh
Q 005849 538 YPTTMLETGHDILFF-WVARMVMMGIEFT-G---SVPFSHVYL-H-GLIRDSQGR--KMSKTLG---NVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~-w~~~~~~~~~~~~-~---~~Pf~~v~~-h-g~v~d~~G~--KMSKS~g---N~i~~~d 599 (674)
+.+|+...|.||... =+++-++-.+... + ..| ..++. + .++..++|. |||||.+ |.|...|
T Consensus 137 ~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 137 YKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred cCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 467999999999753 3555554332110 1 245 22332 2 557778876 9999999 8887644
|
|
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=87.66 E-value=0.91 Score=54.94 Aligned_cols=84 Identities=25% Similarity=0.446 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHcCCccccccc--------------ccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCce
Q 005849 371 FEARKKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (674)
Q Consensus 371 ~~ar~~i~~~L~~~g~~~~~~~~--------------~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~ 436 (674)
.++-..+...|-++|++...+.. +...++|++||.+++.+..+|||++++++++++++.++... .
T Consensus 132 ~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~-~ 210 (805)
T PRK00390 132 YKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLE-D 210 (805)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhc-c
Confidence 35566788888999986553322 12236789999999999999999999999999999987532 3
Q ss_pred EechhHHHHHHHHHhcCCCc
Q 005849 437 IMPERFEKIYNHWLSNIKDW 456 (674)
Q Consensus 437 ~~P~~~~~~~~~~l~~l~DW 456 (674)
+|++.+..-.+||....-+
T Consensus 211 -w~~~v~~~~~~wig~~~~~ 229 (805)
T PRK00390 211 -WPEKVKTMQRNWIGRSEGA 229 (805)
T ss_pred -CcHHHHHHHHhhccccceE
Confidence 5999999999998654433
|
|
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=86.18 E-value=2.6 Score=46.19 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=30.2
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
++++.+.+| =-|+|.+||||... ...+.++++ .|++|.+..+=
T Consensus 64 ~~~~~iytG-~~PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD 106 (368)
T PRK12285 64 GKPFAVYTG-FMPSGPMHIGHKMV---FDELKWHQE-FGANVYIPIAD 106 (368)
T ss_pred CCCeEEEEc-cCCCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecc
Confidence 456777777 46779999999753 445666666 78887776543
|
|
| >PLN02486 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=85.06 E-value=1.1 Score=49.20 Aligned_cols=66 Identities=20% Similarity=0.138 Sum_probs=40.4
Q ss_pred ceeEEeehhhhh-HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCC-ccChhhHHhhhChhHHHHHHhc
Q 005849 541 TMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPIDTIKEFGADALRFTISL 615 (674)
Q Consensus 541 d~~~~G~Dii~~-w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN-~i~~~dll~~ygaD~lR~~l~~ 615 (674)
.++..|.||... =+++-++-. ++...| .++.|.++..+.| .|||||.+| +|+..| .++.++=.+..
T Consensus 221 ~lVPvG~DQd~~~~ltRdia~r--~~~~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 221 CLIPCAIDQDPYFRMTRDVAPR--LGYYKP--ALIESRFFPALQGESGKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred ceeecccchHHHHHHHHHHHHH--hCCCCc--ceeccccccCCCCCCCcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 456679998643 344444432 233356 3444566767777 799999987 798776 45555554443
|
|
| >PRK12283 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=84.99 E-value=0.46 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=20.5
Q ss_pred eeeEeCCCCccccccCCCccChhh
Q 005849 576 HGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 576 hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
+..+..++|+|||||.+|.|...|
T Consensus 254 ~~~I~gLdg~KMSKS~~n~I~L~D 277 (398)
T PRK12283 254 ASKMPGLDGQKMSKSYGNTIGLRE 277 (398)
T ss_pred CCcccCCCCCcCCCCCCCeeeCcC
Confidence 567888899999999999998655
|
|
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=83.69 E-value=2.3 Score=42.83 Aligned_cols=50 Identities=18% Similarity=0.086 Sum_probs=31.0
Q ss_pred eeEEeehhhhhHHHHHHHHhhhhcCC-CCcceeEeeeeEeCCCCccccccCC
Q 005849 542 MLETGHDILFFWVARMVMMGIEFTGS-VPFSHVYLHGLIRDSQGRKMSKTLG 592 (674)
Q Consensus 542 ~~~~G~Dii~~w~~~~~~~~~~~~~~-~Pf~~v~~hg~v~d~~G~KMSKS~g 592 (674)
+++.|.|+.. ++.+...+...+.-. .|--..+.+|+++..+|+||||++|
T Consensus 162 i~v~g~~~~~-~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 162 IYVVGADHHG-HFKRLFAALELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEECCCHHH-HHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 5689999654 344444333333322 2322445669999777999999987
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=83.16 E-value=2.7 Score=44.07 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=22.9
Q ss_pred CCCC-CCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 100 NVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 100 ~~nG-~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
-||| .|||||..+ -..+.++++ .|+++.+..|
T Consensus 7 ~PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~ 39 (273)
T cd00395 7 DPTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIG 39 (273)
T ss_pred cCCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEe
Confidence 4789 699999877 334445554 5899888665
|
Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PLN02486 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=82.21 E-value=7.2 Score=42.96 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=29.9
Q ss_pred CCCEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 005849 89 SDPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~-LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~ 138 (674)
+++|.+.+| =-|+|. |||||+... ..+..+++.-|..+....+ |.
T Consensus 71 ~~~~~vYtG-~~PSg~~lHlGHlv~~---~~~~~lQ~~~~~~~~I~ia-D~ 116 (383)
T PLN02486 71 GEKFYLYTG-RGPSSEALHLGHLIPF---MFTKYLQDAFKVPLVIQLT-DD 116 (383)
T ss_pred CCCeEEEeC-CCCCCccccHHHHHHH---HHHHHHHHhCCCeEEEEec-CH
Confidence 567888888 689995 999995543 4444555565666655533 53
|
|
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=81.43 E-value=4.6 Score=41.49 Aligned_cols=92 Identities=21% Similarity=0.150 Sum_probs=56.4
Q ss_pred ceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCC------c---------cChhhHHh-h
Q 005849 541 TMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN------V---------IDPIDTIK-E 603 (674)
Q Consensus 541 d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN------~---------i~~~dll~-~ 603 (674)
.-.+-|.|.+..- .+..+.-. +.-..| ...-+..+. .+|+||||+++. . .+...+.+ .
T Consensus 125 ThViRg~d~~~~t~~q~~l~~~--Lg~~~P--~~~H~pll~-~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G 199 (240)
T cd09287 125 THVLRGKDHIDNTEKQRYIYEY--FGWEYP--ETIHWGRLK-IEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRG 199 (240)
T ss_pred CeEEechhhhhCCHHHHHHHHH--cCCCCC--cEEeeeeec-CCCCeeccccccccccccccccccCcchHHHHHHHHCC
Confidence 4456677765422 22222222 222345 444456665 578999999842 1 23333333 4
Q ss_pred hChhHHHHHHhcCCC-CCccccCHHHHHH-HHHHHH
Q 005849 604 FGADALRFTISLGTA-GQDLSLSIERLTA-NKAFTN 637 (674)
Q Consensus 604 ygaD~lR~~l~~~~~-~~d~~fs~~~l~~-~~~~~~ 637 (674)
|.+++++-|+..... ..+..++++.|.. +++.++
T Consensus 200 ~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l~ 235 (240)
T cd09287 200 IRPEAIRDFIIEVGVKQTDATISWENLYAINRKLID 235 (240)
T ss_pred CCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHhc
Confidence 789999999888877 8888999999876 555554
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 674 | ||||
| 1gax_A | 862 | Crystal Structure Of Thermus Thermophilus Valyl-Trn | 1e-164 | ||
| 1qu2_A | 917 | Insights Into Editing From An Ile-Trna Synthetase S | 4e-56 | ||
| 1jzq_A | 821 | Isoleucyl-Trna Synthetase Complexed With Isoleucyl- | 1e-54 | ||
| 1wka_A | 147 | Structural Basis For Non-Cognate Amino Acid Discrim | 3e-28 | ||
| 1wk9_A | 146 | Structural Basis For Non-Cognate Amino Acid Discrim | 8e-28 | ||
| 4aq7_A | 880 | Ternary Complex Of E. Coli Leucyl-Trna Synthetase, | 2e-22 | ||
| 2v0c_A | 878 | Leucyl-Trna Synthetase From Thermus Thermophilus Co | 7e-22 | ||
| 1obh_A | 878 | Leucyl-Trna Synthetase From Thermus Thermophilus Co | 8e-22 | ||
| 1wkb_A | 810 | Crystal Structure Of Leucyl-Trna Synthetase From Th | 3e-20 | ||
| 1wz2_A | 967 | The Crystal Structure Of Leucyl-Trna Synthetase And | 7e-20 | ||
| 2d54_A | 502 | Crystal Structure Of Methionyl Trna Synthetase Y225 | 6e-11 | ||
| 1a8h_A | 500 | Methionyl-Trna Synthetase From Thermus Thermophilus | 8e-11 | ||
| 1woy_A | 500 | Crystal Structure Of Methionyl Trna Synthetase Y225 | 9e-11 | ||
| 3ziu_A | 637 | Crystal Structure Of Mycoplasma Mobile Leucyl-trna | 2e-10 | ||
| 2x1l_A | 524 | Crystal Structure Of Mycobacterium Smegmatis Methio | 5e-10 | ||
| 4dlp_A | 536 | Crystal Structure Of Methionyl-Trna Synthetase Metr | 3e-09 | ||
| 3o0a_A | 219 | Crystal Structure Of The Wild Type Cp1 Hydrolitic D | 8e-08 | ||
| 2ajg_A | 196 | Crystal Structure Of The Editing Domain Of E. Coli | 1e-07 | ||
| 3pz0_A | 221 | The Crystal Structure Of Aaleurs-Cp1 Length = 221 | 1e-07 | ||
| 4eg1_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 1e-07 | ||
| 4eg1_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 3e-04 | ||
| 4eg5_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 1e-07 | ||
| 4eg5_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 3e-04 | ||
| 3pz5_A | 201 | The Crystal Structure Of Aaleurs-Cp1-D20 Length = 2 | 1e-07 | ||
| 3tun_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 1e-07 | ||
| 3tun_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 3e-04 | ||
| 2csx_A | 497 | Crystal Structure Of Aquifex Aeolicus Methionyl-Trn | 2e-07 | ||
| 1wk8_A | 194 | Isoleucyl-Trna Synthetase Editing Domain Complexed | 1e-05 | ||
| 1wny_A | 186 | Isoleucyl-Trna Synthetase Editing Domain Length = 1 | 2e-05 | ||
| 1ue0_A | 182 | Isoleucyl-Trna Synthetase Editing Domain Complexed | 4e-05 | ||
| 1udz_A | 182 | Isoleucyl-Trna Synthetase Editing Domain Length = 1 | 4e-05 | ||
| 3kfl_A | 564 | Leishmania Major Methionyl-Trna Synthetase In Compl | 3e-04 |
| >pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862 | Back alignment and structure |
|
| >pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure With Trna(Ile) And Mupirocin Length = 917 | Back alignment and structure |
|
| >pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl- Adenylate Analogue Length = 821 | Back alignment and structure |
|
| >pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination By The Valyl-Trna Synthetase Editing Domain Length = 147 | Back alignment and structure |
|
| >pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination By The Valyl-Trna Synthetase Editing Domain Length = 146 | Back alignment and structure |
|
| >pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880 | Back alignment and structure |
|
| >pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 | Back alignment and structure |
|
| >pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 | Back alignment and structure |
|
| >pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 | Back alignment and structure |
|
| >pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 | Back alignment and structure |
|
| >pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a Mutant From Thermus Thermophilus Length = 502 | Back alignment and structure |
|
| >pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus Length = 500 | Back alignment and structure |
|
| >pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f Mutant From Thermus Thermophilus Length = 500 | Back alignment and structure |
|
| >pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna Synthetase With Leu-ams In The Active Site Length = 637 | Back alignment and structure |
|
| >pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 | Back alignment and structure |
|
| >pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From Brucella Melitensis Bound To Selenomethionine Length = 536 | Back alignment and structure |
|
| >pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain From Aquifex Aeolicus Leucyl-Trna Length = 219 | Back alignment and structure |
|
| >pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl- Trna Synthetase Length = 196 | Back alignment and structure |
|
| >pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1 Length = 221 | Back alignment and structure |
|
| >pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542 | Back alignment and structure |
|
| >pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542 | Back alignment and structure |
|
| >pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542 | Back alignment and structure |
|
| >pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542 | Back alignment and structure |
|
| >pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20 Length = 201 | Back alignment and structure |
|
| >pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542 | Back alignment and structure |
|
| >pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542 | Back alignment and structure |
|
| >pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497 | Back alignment and structure |
|
| >pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With The Pre-Transfer Editing Substrate Analogue, Val-Ams Length = 194 | Back alignment and structure |
|
| >pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 186 | Back alignment and structure |
|
| >pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L- Valine Length = 182 | Back alignment and structure |
|
| >pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 182 | Back alignment and structure |
|
| >pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With Methionyladenylate And Pyrophosphate Length = 564 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 | Back alignment and structure |
|---|
Score = 1073 bits (2778), Expect = 0.0
Identities = 287/597 (48%), Positives = 389/597 (65%), Gaps = 9/597 (1%)
Query: 59 LPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
LPK +D S E + W + F N + G PFVI MPPPNVTGSLHMGHA+ +L+D
Sbjct: 3 LPKAYDPKSVEPKWAEKWA-KNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQD 61
Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
++RY RM+G +WLPGTDHAGIATQ+VVE++L EG R +L R++F +RVW+WKE+
Sbjct: 62 ALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEES 121
Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
GGTI Q+KRLGAS DW+RE FT+DE+ SRAV AF R + +GL Y+ +VNW P +T
Sbjct: 122 GGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCET 181
Query: 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297
+SDLEVE PG LY ++Y V G F+ IAT RPET+F D A+AV+P+DE Y +G
Sbjct: 182 TLSDLEVETEPTPGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLG 240
Query: 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357
A +P+T +PI++D V+K+FGTG LK++P HD DY + + GL ++V+N +G
Sbjct: 241 KRARIPLT-EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGR 299
Query: 358 LNE--VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQW 415
+ V RGLDRFEAR+K E G VK+E +T+ + R G IE + QW
Sbjct: 300 MEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQW 359
Query: 416 FVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG 475
++ M PLAE+ L + +G++ +PER++K+ WL N+KDW ISRQLWWGH+IP WY
Sbjct: 360 WLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWY-CE 418
Query: 476 KEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFK 535
+ V R + + + + +D DV DTWFSSALWP STLGWP+ +D K
Sbjct: 419 DCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPE-ETEDLK 477
Query: 536 KFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI 595
FYP +L TG+DILF WV+RM + G F G PF V LHGL+ D +G+KMSK+ GNVI
Sbjct: 478 AFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVI 537
Query: 596 DPIDTIKEFGADALRFTISLG-TAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLP 651
DP++ ++ +GADALRF + T GQD+ L + L + F NKL+NA +F+L +
Sbjct: 538 DPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSRE 594
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 412 bits (1060), Expect = e-132
Identities = 129/721 (17%), Positives = 235/721 (32%), Gaps = 132/721 (18%)
Query: 63 FDFTS-EERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIM 119
+F + EE+ W F+PN F I++ P ++G LH+GHA T+ D++
Sbjct: 4 LNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVI 63
Query: 120 VRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLA--------AEGIKRVELSRDEFTKRVW 171
R+ RM+G L+ G + E++ + +V +
Sbjct: 64 ARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPI 123
Query: 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMV 229
+ + R G S DW+RE +T S+ + F +L EKG I +G++ V
Sbjct: 124 NIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRV 183
Query: 230 NWSPNLQTAVSDLEVEYSEEPG----TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAV 285
W P + T + D ++ E+ + + R G +L AT RPET++G + V
Sbjct: 184 RWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWV 243
Query: 286 NPQ--------------------------------------DEHYSQFIGMMAIVPMTYG 307
NP + + IG P++ G
Sbjct: 244 NPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVS-G 302
Query: 308 RHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL----------ARKLGLPILNVMNKDGT 357
V I+ ++VD + TGV+ P H D++ K + V N
Sbjct: 303 DEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYI 362
Query: 358 ------------------------------LNE---------------VAGLFRGLDRFE 372
L + + G E
Sbjct: 363 SLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQE 422
Query: 373 ARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEK 432
++ + ++ E G+A + S+ G + ++ QWF+ K
Sbjct: 423 VKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKAL 482
Query: 433 GELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEE-----EYIVARNAD 487
+ I+PE + + + +R++ G +P E Y+
Sbjct: 483 ERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTIS 542
Query: 488 EALEKAHQKYGKNVEI------------YQDPDVLDTWFSSALWPFSTLGWPDVSADDFK 535
+ K Q+ + E D P + ++F+
Sbjct: 543 RHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMK---EEFE 599
Query: 536 KFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI 595
+YP +G D++ + + + + +G+KMSK+ GNV+
Sbjct: 600 YWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVL 659
Query: 596 DPIDTIKEFGADALRFTI-SLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQN 654
+ ID I+E GAD +R I SL D + + + + + + N
Sbjct: 660 NFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGN 719
Query: 655 D 655
Sbjct: 720 V 720
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 380 bits (977), Expect = e-121
Identities = 128/723 (17%), Positives = 240/723 (33%), Gaps = 126/723 (17%)
Query: 63 FDFTS-EERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIM 119
+F + EE+ W F+PN F I++ P ++G LH+GHA T+ D++
Sbjct: 4 LNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVI 63
Query: 120 VRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAA--------EGIKRVELSRDEFTKRVW 171
R+ RM+G L+ G + E++ + +V +
Sbjct: 64 ARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPI 123
Query: 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMV 229
+ + R G S DW+RE +T S+ + F +L EKG I +G++ V
Sbjct: 124 NIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRV 183
Query: 230 NWSPNLQTAVSDLEVEYSEEPG----TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAV 285
W P + T + D ++ E+ + + R G +L AT RPET++G + V
Sbjct: 184 RWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWV 243
Query: 286 NPQ--------------------------------------DEHYSQFIGMMAIVPMTYG 307
NP + + IG P++ G
Sbjct: 244 NPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVS-G 302
Query: 308 RHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLG------------------LPIL 349
V I+ ++VD + TGV+ P H D++ L + +
Sbjct: 303 DEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYI 362
Query: 350 NVMNKDGTLNEVA-------------------------------------GLFRGLDRFE 372
+++ +G + A + G E
Sbjct: 363 SLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQE 422
Query: 373 ARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEK 432
++ + ++ E G+A + S+ G + ++ QWF+ K
Sbjct: 423 VKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKAL 482
Query: 433 GELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYI----VARNADE 488
+ I+PE + + + +R++ G +P E +A
Sbjct: 483 ERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTIS 542
Query: 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA----------DDFKKFY 538
++ GK P+ D F + ++F+ +Y
Sbjct: 543 RHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWY 602
Query: 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPI 598
P +G D++ + + + + +G+KMSK+ GNV++ I
Sbjct: 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFI 662
Query: 599 DTIKEFGADALRFTI-SLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDIS 657
D I+E GAD +R I SL D + + + + + + N
Sbjct: 663 DAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVEL 722
Query: 658 RWE 660
+
Sbjct: 723 KDI 725
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 5e-87
Identities = 167/662 (25%), Positives = 267/662 (40%), Gaps = 99/662 (14%)
Query: 68 EERIYNWWESQGYFKPNFER--GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRM 125
EE + +W+ + F+ + E G + + PP G H+GHA + +D+ RY M
Sbjct: 14 EEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTM 73
Query: 126 KGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKR----VELSRDEFTKRVWEWKEKYGGTI 181
+G G D G+ +L VEK L G+K + F + E Y
Sbjct: 74 RGYYAPRRAGWDTHGLPVELEVEKKL---GLKSKREIEAYGIERFNQACRESVFTYEKEW 130
Query: 182 TSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSD 241
+ +R+ D TL+ ++ + L ++GL+Y+ +V + P T +S
Sbjct: 131 EAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSS 190
Query: 242 LEVE--YSEEPGTLYYIKYRVAGRSD------FLTIATTRPETLFGDVALAVNP------ 287
EV Y E Y+++ + L I TT P TL G+VA AV+P
Sbjct: 191 HEVALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAA 250
Query: 288 ---QDEHY-----------------------SQFIGMMAIVPMTY--GRHVPIISDKYVD 319
DE G+ P + ++ YV
Sbjct: 251 FQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVS 310
Query: 320 KEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWS 379
+E GTG++ +P D AR GLP+L ++++G L + F+GL EA + +
Sbjct: 311 QEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKL--LVEPFKGLYFREANRAILR 368
Query: 380 DLEETGLAVKKEPHTLRVP---RSQRGGEVIEPLVSK---QWFVTMEPLAEKALHAVEKG 433
DL GL K+E + P R PL+ WF+ ++ + ++
Sbjct: 369 DLRGRGLLFKEESYLHSYPHCWRCS------TPLMYYATESWFIKNTLFKDELIRNNQE- 421
Query: 434 ELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEK 492
+ +P E Y WL N+ DW +SR +WG +P+W +E + + L+
Sbjct: 422 -IHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQE--LKA 478
Query: 493 AHQKYGKNVEIYQD----------------------PDVLDTWFSSALWPFSTLGWPDVS 530
+ K + D P V+D W+ S PF++L +P
Sbjct: 479 ---RATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEH 535
Query: 531 ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKT 590
+ F++ +P + G D W + +G+ GS+ F +V HGLI D +G+KMSK+
Sbjct: 536 EEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKS 595
Query: 591 LGNVIDPIDTIKEFGADALR-FTISLGTAGQDLSLSIE--RLTANKAFTNKLWNAGKFIL 647
GNV+DP D I++FGADALR + D R T F LWN F +
Sbjct: 596 KGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYF-LTLWNVYSFFV 654
Query: 648 QN 649
Sbjct: 655 TY 656
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 | Back alignment and structure |
|---|
Score = 253 bits (648), Expect = 3e-73
Identities = 162/648 (25%), Positives = 278/648 (42%), Gaps = 125/648 (19%)
Query: 56 KDT--LPKTFDF-------TSEERIYNWWESQGYFKPNFER--GSDPFVISMPPPNVTGS 104
+ T +PKT DF E +I W+++ + E+ G++ F++ PP G+
Sbjct: 4 EKTLLMPKT-DFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGN 62
Query: 105 LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD-HAGIATQLVVEKMLAAEGIKRVELSR 163
LHMGHA+ L+D +VRY M+G ++PG D H G+ + + K +G+ R ++S
Sbjct: 63 LHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTH-GLPIEQALTK----KGVDRKKMST 117
Query: 164 DEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIY 223
EF ++ E+ + +RLG D+ TL + A + F + +KGLIY
Sbjct: 118 AEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIY 177
Query: 224 QGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLT------IATTRPETL 277
+G V WSP+ ++++++ E+EY ++ Y+ + V + I TT P T+
Sbjct: 178 KGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTI 237
Query: 278 FGDVALAVNP---------QDEHY-----------------------------SQFIGMM 299
+VA+ V+P E Y + ++
Sbjct: 238 PSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVV 297
Query: 300 AIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLN 359
A P R +I+ +V + GTG + +PGH +DY++ ++ LP+++ ++ G
Sbjct: 298 AQHPF-LDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFT 356
Query: 360 EVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP---RSQRGGEVIEPLV---SK 413
E G F G+ +A K + L E G +K + T P R++ +P++ +
Sbjct: 357 EEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTK------KPVIFRATP 410
Query: 414 QWFVTMEPLAEKALHAVEKGELTIMPERFEK-IYNHWLSNIKDWCISRQLWWGHRIPVWY 472
QWF ++ + + L A+E + IYN + + +W ISRQ WG +PV+Y
Sbjct: 411 QWFASISKVRQDILDAIEN--TNFKVNWGKTRIYN-MVRDRGEWVISRQRVWGVPLPVFY 467
Query: 473 IVGKEE-------EYIVAR------------NADEALEKAHQKYGKNVEIY-QDPDVLDT 512
E ++ A + L + G + ++ D++D
Sbjct: 468 AENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDV 527
Query: 513 WFSSALWPFSTLGWPDVSADDFKKFYPTTM-LETGHD---------ILFFWVARMVMMGI 562
WF S S+ V + +P M LE G D I +
Sbjct: 528 WFDSG----SS--HRGVLETRPELSFPADMYLE-GSDQYRGWFNSSIT---------TSV 571
Query: 563 EFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR 610
G P+ + HG + D +G+KMSK+LGNVI P +K+ GAD R
Sbjct: 572 ATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIAR 619
|
| >1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* Length = 147 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 5e-73
Identities = 66/147 (44%), Positives = 93/147 (63%), Gaps = 4/147 (2%)
Query: 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRH 309
PG LY ++Y V G F+ IAT RPET+F D A+AV+P+DE Y +G A +P+T
Sbjct: 3 PGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLT-EVW 60
Query: 310 VPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNE--VAGLFRG 367
+PI++D V+K+FGTG LK++P HD DY + + GL ++V+N +G + V RG
Sbjct: 61 IPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRG 120
Query: 368 LDRFEARKKLWSDLEETGLAVKKEPHT 394
LDRFEAR+K E G VK+E +T
Sbjct: 121 LDRFEARRKAVELFREAGHLVKEEDYT 147
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-29
Identities = 109/441 (24%), Positives = 164/441 (37%), Gaps = 157/441 (35%)
Query: 68 EERIYNWWESQGYFKPNFERGSDPF-VISMPP-PNVTGSLHMGHAMFVTLEDIMVRYHRM 125
E ++ W+ + F+ + + + +SM P P +G LHMGH T+ D++ RY RM
Sbjct: 31 ESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYP--SGRLHMGHVRNYTIGDVIARYQRM 88
Query: 126 KGRPTL----W----LPGTDHAGIATQLVVEKMLAAEG--IKRVELSRDEFTKRVWEWKE 175
G+ L W LP AEG +K + +T
Sbjct: 89 LGKNVLQPIGWDAFGLP------------------AEGAAVKN-NTAPAPWTYDNIA--- 126
Query: 176 KYGGTITSQIKRLGASCDWTRERFTLD------EQLSRAVVEAFIRLHEKGLIYQGSYMV 229
+ +Q+K LG DW+RE T EQ + F L++KGL+Y+ + V
Sbjct: 127 ----YMKNQLKMLGFGYDWSRELATCTPEYYRWEQ------KFFTELYKKGLVYKKTSAV 176
Query: 230 NWSPNLQTAV-------------SDLEVE-------------YSEE-----------P-- 250
NW PN QT V D +VE Y++E P
Sbjct: 177 NWCPNDQT-VLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDT 235
Query: 251 -------------GTLYYIKYRVAGRSDFLTIATTRPETLFGD--VALAVN--------P 287
G I + V + LT+ TTRP+T G +A+A
Sbjct: 236 VKTMQRNWIGRSEGVE--ITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAE 293
Query: 288 QDEHYSQFI-----------------------GMMAIVPMTYGRHVPI-ISDKYVDKEFG 323
+ + FI G A+ P+T G +P+ ++ +V E+G
Sbjct: 294 NNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLT-GEEIPVWAAN-FVLMEYG 351
Query: 324 TGVLKISPGHDHNDYLLARKLGLPILNV-MNKDGTLNEVA-------------GLFRGLD 369
TG + PGHD DY A K GL I V + DG+ +++ G F GLD
Sbjct: 352 TGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLD 411
Query: 370 RFEARKKLWSDLEETGLAVKK 390
A + L G+ +K
Sbjct: 412 HEAAFNAIADKLTAMGVGERK 432
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 8e-07
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 586 KMSKTLGNVIDPIDTIKEFGADALR-FTISLGTAGQDLSLSIERLTANKAFTNKLWN 641
KMSK+ N IDP ++ +GAD +R F + A L + F ++W
Sbjct: 639 KMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWK 695
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-28
Identities = 110/443 (24%), Positives = 155/443 (34%), Gaps = 158/443 (35%)
Query: 68 EERIYNWWESQGYFKPNFERGSDP--FVISMPP-PNVTGSLHMGHAMFVTLEDIMVRYHR 124
E + +WE +G+ K G +V+ M P P +G LHMGH T+ D++ R+ R
Sbjct: 10 EAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYP--SGDLHMGHLKNYTMGDVLARFRR 67
Query: 125 MKGRPTL----W----LPGTDHAGIATQLVVEKMLAAEG--IKRVELSRDEFTKRVWEWK 174
M+G L W LP AE +K +D W
Sbjct: 68 MQGYEVLHPMGWDAFGLP------------------AENAALKFGVHPKD--------WT 101
Query: 175 EKYGGTITSQIKRLGASCDWTRERFTLD------EQLSRAVVEAFIRLHEKGLIYQGSYM 228
++ +G DW RE T + Q F+++ EKGL Y+ +
Sbjct: 102 YANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQW------IFLKMWEKGLAYRAKGL 155
Query: 229 VNWSPNLQTAV-------------SDLEVE-------------YSEE----------P-- 250
VNW P QT + D VE Y+E P
Sbjct: 156 VNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEK 215
Query: 251 -------------GTLYYIKYRVAGRSDFLTIATTRPETLFGD--VALAV---------- 285
G I + V G+ + + TTRP+TLFG + LA
Sbjct: 216 VKAMQRAWIGRSEGA--EILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAA 273
Query: 286 ---NPQDEHYSQ--------------------FIGMMAIVPMTYGRHVPI-ISDKYVDKE 321
+ Y + F+G A+ P T G +PI +D YV
Sbjct: 274 PEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPAT-GERIPIWTAD-YVLFG 331
Query: 322 FGTGVLKISPGHDHNDYLLARKLGLPILNV-MNKDGTLNEVA-------------GLFRG 367
+GTG + P HD DY ARK GLPI V L E G F G
Sbjct: 332 YGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDG 391
Query: 368 LDRFEARKKLWSDLEETGLAVKK 390
+ E ++K+ + LEE GL +
Sbjct: 392 TESEEGKRKVIAWLEEKGLGKGR 414
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 586 KMSKTLGNVIDPIDTIKEFGADALR-FTISLGTAGQDLSLSIERLTANKAFTNKLWN 641
MSK+ GN + +KE GAD R + ++ + E + F N+++
Sbjct: 637 VMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYR 693
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 3e-16
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 522 STLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVM-MGIEFTGSVPFSHVYLH 576
S L +P+ + ++ F+P G DIL W M+ GI + H+ +
Sbjct: 236 SALDYPE--GEAYRTFWPHAWHLIGKDILKPHAVFWPT-MLKAAGIP-----MYRHLNVG 287
Query: 577 GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR-FTISLGTAGQDLSLSIERLTA--NK 633
G + GRKMSKTLGNV+DP ++++G DALR + + GQD +S E L
Sbjct: 288 GFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEA 347
Query: 634 AFTNKLWN 641
+ L N
Sbjct: 348 DLADDLGN 355
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 6e-11
Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 28/144 (19%)
Query: 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVE 148
F ++ P V H+GHA + D + R+HR+ G T +L GTD G V
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG----ETVY 57
Query: 149 KMLAAEGIKRVELSRDEFT---KRVWEWKEKYGGTITSQIKRLGASCDWTRERF--TLDE 203
+ A G D + KR W LG + D F T +E
Sbjct: 58 RAAQAAGEDPKAFV-DRVSGRFKRAW--------------DLLGIAYD----DFIRTTEE 98
Query: 204 QLSRAVVEAFIRLHEKGLIYQGSY 227
+ + V +++E G IY G Y
Sbjct: 99 RHKKVVQLVLKKVYEAGDIYYGEY 122
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 3e-16
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 17/129 (13%)
Query: 522 STLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVM-MGIEFTGSVPFSHVYLH 576
+ +G+PD ++ F++++P + G DI+ F W A +M G+ ++ H
Sbjct: 248 TGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPA-FLMSAGLP-----LPKRIFAH 301
Query: 577 G-LIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR-FTISLGTAGQDLSLSIERLTA--N 632
G L+ G KMSK++GNV+DP++ + FG D +R F + GQD S + + + N
Sbjct: 302 GWLLNR--GEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVN 359
Query: 633 KAFTNKLWN 641
N+L N
Sbjct: 360 ADLANELGN 368
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 7e-11
Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 28/145 (19%)
Query: 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVV 147
GS+PF I+ G H+GHA D + R+ R+ G +L GTD G +
Sbjct: 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHG----QKM 65
Query: 148 EKMLAAEGIKRVELSRDEFT---KRVWEWKEKYGGTITSQIKRLGASCDWTRERF--TLD 202
+ A EGI EL+ + +R+ ++L S D RF T D
Sbjct: 66 AETAAKEGIPAAELA-RRNSDVFQRLQ--------------EKLNISFD----RFIRTSD 106
Query: 203 EQLSRAVVEAFIRLHEKGLIYQGSY 227
A + R+ + G IY +Y
Sbjct: 107 ADHYEASKAIWKRMADAGDIYLDAY 131
|
| >3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 3e-15
Identities = 54/275 (19%), Positives = 91/275 (33%), Gaps = 47/275 (17%)
Query: 381 LEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPE 440
L + + S G V+ + + + + E+ L I+PE
Sbjct: 140 LTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPE 199
Query: 441 -RFEKIYNHWLSNIKDWCISRQLW----WGHRIPVWYIVGKEEEYIVARNADEALEKAHQ 495
R ++ + D +SR W +P
Sbjct: 200 FRRREVIRAVEKGLPDLSVSRARATLHNWAIPVP-------------------------- 233
Query: 496 KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADD--FKKFYPTTMLETGHDILFF- 552
+ +Y D L + + + G DD + +P + G DIL F
Sbjct: 234 -GNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFH 292
Query: 553 ---WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADAL 609
W A ++ G+ + HG +K+SK+LGNV DP++ +EFG DAL
Sbjct: 293 AIYWPAFLLSAGLP-----LPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDAL 346
Query: 610 R-FTISLGTAGQDLSLSIERLTA--NKAFTNKLWN 641
+ F + D S + + A N + L N
Sbjct: 347 KYFLLRESGFSDDGDYSDKNMIARLNGELADTLGN 381
|
| >3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 40/214 (18%), Positives = 76/214 (35%), Gaps = 26/214 (12%)
Query: 83 PNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIA 142
P + F ++ P V + H+GH + D++ RYHR+KG L GTD G
Sbjct: 2 PGSMKVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG-- 59
Query: 143 TQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERF--T 200
V + + + + + + + K+ D++ + F T
Sbjct: 60 --QKVAEAAKQKQVSPYDFT-TA---------------VAGEFKKXFEQMDYSIDYFIRT 101
Query: 201 LDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRV 260
+EQ V E + +L +KG IY G Y +S + ++ ++ + +
Sbjct: 102 TNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLE 161
Query: 261 AGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ 294
+G + E ++ E Y
Sbjct: 162 SGHV----VTWVSEENYMFRLSAFRERLLEWYHA 191
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 5e-15
Identities = 43/129 (33%), Positives = 60/129 (46%), Gaps = 18/129 (13%)
Query: 522 STLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVM-MGIEFTGSVPFSHVYLH 576
+ LG+PD + D+ ++P G DI F W A +M + V+ H
Sbjct: 260 TALGYPD-TTDERWAYWPANAHIIGKDISRFHAVYWPA-FLMSAQLP-----LPKRVFAH 312
Query: 577 G-LIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR-FTISLGTAGQDLSLSIERLTA--N 632
G L G KMSK++GNVIDP + ++ +G D LR F + GQD S S E + N
Sbjct: 313 GFLFNR--GEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTN 370
Query: 633 KAFTNKLWN 641
N L N
Sbjct: 371 ADLANDLGN 379
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 44/151 (29%)
Query: 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD-H---------- 138
+ + I+ G H+GHA + D M R+ R+ G +L GTD H
Sbjct: 25 EKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARK 84
Query: 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 198
GI + + ++ + F +R+ + L +S D
Sbjct: 85 EGITPRDLADRNTS------------AF-RRMA--------------EVLNSSND----D 113
Query: 199 F--TLDEQLSRAVVEAFIRLHEKGLIYQGSY 227
+ T +E+ +A + + G IY+G Y
Sbjct: 114 YIRTSEERHYKASQAIWQAMVANGDIYKGGY 144
|
| >2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A Length = 196 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-14
Identities = 48/183 (26%), Positives = 73/183 (39%), Gaps = 50/183 (27%)
Query: 256 IKYRVAGRSDFLTIATTRPETLFGD--VALAV-----------NPQDEHYSQ-------- 294
I + V + LT+ TTRP+T G +A+A NP+ +
Sbjct: 15 ITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVA 74
Query: 295 ------------FIGMMAIVPMTYGRHVPI-ISDKYVDKEFGTGVLKISPGHDHNDYLLA 341
G A+ P+T G +P+ ++ +V E+GTG + PGHD DY A
Sbjct: 75 EAEMATMEKKGVDTGFKAVHPLT-GEEIPVWAAN-FVLMEYGTGAVMAVPGHDQRDYEFA 132
Query: 342 RKLGLPILNV-MNKDGTLNEVA-------------GLFRGLDRFEARKKLWSDLEETGLA 387
K GL I V + DG+ +++ G F GLD A + L G+
Sbjct: 133 SKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVG 192
Query: 388 VKK 390
+K
Sbjct: 193 ERK 195
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-14
Identities = 58/282 (20%), Positives = 93/282 (32%), Gaps = 66/282 (23%)
Query: 383 ETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF 442
+A + S G V+ + + + + E+ L I+PE
Sbjct: 159 AQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFR 218
Query: 443 EKIYNHWLSN-IKDWCISRQLW----WGHRIP--------VWYIVGKEEEYIVARNADEA 489
+ + + D ISR+ W +P VW
Sbjct: 219 RREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWL----------------- 261
Query: 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADD-FKKFYPTTMLETGHD 548
D L +++ AL +T G + D +P + G D
Sbjct: 262 ------------------DALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKD 303
Query: 549 ILFF----WVARMVM-MGIEFTGSVPFSHVYLHG-LIRDSQGRKMSKTLGNVIDPIDTIK 602
IL F W A +M + + HG +D +K+SK+LGN DP++ K
Sbjct: 304 ILKFHAIYWPA-FLMSAELP-----LPERLVSHGWWTKD--HKKISKSLGNAFDPVEKAK 355
Query: 603 EFGADALR-FTISLGTAGQDLSLSIERLTA--NKAFTNKLWN 641
EFG DAL+ F + D S + + A N + L N
Sbjct: 356 EFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGN 397
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 6e-10
Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 44/159 (27%)
Query: 82 KPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD-H-- 138
P + F + P V S H+GH + D++ RYHR+KG + GTD H
Sbjct: 18 GPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQ 77
Query: 139 --------AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGA 190
G++ + + EF K+ + + +
Sbjct: 78 KVAEAAAKQGVSPMDFTTSVSS------------EF-KQCF--------------QEMNY 110
Query: 191 SCDWTRERF--TLDEQLSRAVVEAFIRLHEKGLIYQGSY 227
+ F T + + V + + +L KG IY G Y
Sbjct: 111 DMN----YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKY 145
|
| >2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Length = 261 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 4e-14
Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 41/150 (27%)
Query: 237 TAVSDLEVEYSEEPGTLYYIK-YRVAGRSDFLTIATTRPETLFGDVALAVNP-------- 287
+ + + + L+ + V +L AT RPET++G V+P
Sbjct: 4 VGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFD 63
Query: 288 -QDEHY-------------------------------SQFIGMMAIVPMTYGRHVPIISD 315
+ Y IG P +++ ++
Sbjct: 64 AGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPM 123
Query: 316 KYVDKEFGTGVLKISPGHDHNDYLLARKLG 345
+ V GTGV+ P +D++ R L
Sbjct: 124 ETVLATKGTGVVTCVPSDSPDDFVTTRDLA 153
|
| >1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Length = 186 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 2e-13
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 42/180 (23%)
Query: 255 YIKYRV------AGRSDFLTIATTRPETLFGDVALAVNPQ---------DEHY------- 292
Y+++ + L I TT P TL G+VA AV+P+ DE
Sbjct: 7 YVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLG 66
Query: 293 ----------------SQFIGMMAIVPMTYG--RHVPIISDKYVDKEFGTGVLKISPGHD 334
G+ P + ++ YV +E GTG++ +P
Sbjct: 67 RKLLGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFG 126
Query: 335 HNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHT 394
D AR GLP+L ++++G L + F+GL EA + + DL GL K+E +
Sbjct: 127 AEDLETARVYGLPLLKTVDEEGKL--LVEPFKGLYFREANRAILRDLRGRGLLFKEESYL 184
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 3e-13
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 17/119 (14%)
Query: 532 DDFKKFYPTTMLETGHDILFF----WVARMVM-MGIEFTGSVPFSHVYLHG-LIRDSQGR 585
D + ++P + G DIL F W A +M +G E V+ HG + G+
Sbjct: 243 DKVEIYWPADLHLVGKDILRFHTVYWPA-FLMSLGYE-----LPKKVFAHGWWTVE--GK 294
Query: 586 KMSKTLGNVIDPIDTIKEFGADALR-FTISLGTAGQDLSLSIERLTA--NKAFTNKLWN 641
KMSKTLGNV+DP + ++E+G D +R F + GQD S + + N N++ N
Sbjct: 295 KMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGN 353
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 36/144 (25%), Positives = 55/144 (38%), Gaps = 28/144 (19%)
Query: 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVE 148
F ++ P V H+GHA D + RY+R++ +L GTD G L ++
Sbjct: 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHG----LKIQ 59
Query: 149 KMLAAEGIKRVELSRDEFT---KRVWEWKEKYGGTITSQIKRLGASCDWTRERF--TLDE 203
K GI EL D K++W + L +F T D
Sbjct: 60 KKAEELGISPKELV-DRNAERFKKLW--------------EFLKIEYT----KFIRTTDP 100
Query: 204 QLSRAVVEAFIRLHEKGLIYQGSY 227
+ V + F +++G IY G Y
Sbjct: 101 YHVKFVQKVFEECYKRGDIYLGEY 124
|
| >3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Length = 311 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 3e-13
Identities = 27/200 (13%), Positives = 54/200 (27%), Gaps = 49/200 (24%)
Query: 210 VEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY-------SEEPGTLYYIKYRVAG 262
+ + L E+ Q + L ++ + + +V
Sbjct: 18 LINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFYSNPKNKAIFDQLWENQVDN 77
Query: 263 RSDFLTIATTRPETLFGDVALAVNP----------QDEHY-------------------- 292
+L AT RPET+ G V P +DE
Sbjct: 78 AKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMAHQGLNNNKP 137
Query: 293 ------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL 340
S + P++ + ++ + + + GTG++ P +DY
Sbjct: 138 FGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYAC 197
Query: 341 ARKLGLPILNVMNKDGTLNE 360
+ + + K G
Sbjct: 198 YKDILENRNGIAEKYGVDVG 217
|
| >3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A Length = 219 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 9e-13
Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 59/208 (28%)
Query: 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEH------ 291
V E E + + + ++ + TTRP+T+FG + + P EH
Sbjct: 11 YVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAP--EHPLVPVL 68
Query: 292 -----------------YSQ-------------------FIGMMAIVPMTYGRHVPI-IS 314
+ + F+G+ A P G +P+ +
Sbjct: 69 ACIGERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPAN-GEKIPVWSA 127
Query: 315 DKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA------------ 362
+ YV E+GTG + P HD D+ A+K LPI V+ +G +
Sbjct: 128 N-YVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNS 186
Query: 363 GLFRGLDRFEARKKLWSDLEETGLAVKK 390
F GLD A++K+ L++ GL KK
Sbjct: 187 DGFDGLDSETAKRKITEWLQDRGLGEKK 214
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 49/277 (17%), Positives = 88/277 (31%), Gaps = 64/277 (23%)
Query: 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL 450
P L PR G I S +++ M+ AE+ +EK P + + W+
Sbjct: 164 TPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWK--PNVKNMVLS-WI 220
Query: 451 SN-IKDWCISRQLWWGHRIP------------VW------YIVGKEEEYIVARNADEALE 491
+++ I+R L WG +P VW YI E+ +
Sbjct: 221 EEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYI-SITIEHFKRIGKPNEWK 279
Query: 492 KAHQKYGKNVEIYQ----DPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGH 547
K + D + F + WP + + ++ + + +
Sbjct: 280 KYWLNIDGQTRVIHFIGKD----NIPFHAIFWPAFLMAYGKYKDEEVEAEWNLP-----Y 330
Query: 548 DILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGAD 607
DI ++ YL +G+K S + I + + F AD
Sbjct: 331 DI--------------------PANEYLT-----LEGKKFSTSRNWAIWVHEFLDVFPAD 365
Query: 608 ALRFTI-SLGTAGQDLSLSIERLTA--NKAFTNKLWN 641
LR+ + ++ +D S N+ N L N
Sbjct: 366 YLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGN 402
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 21/138 (15%)
Query: 99 PNVTGSLHMGHAMFVTLE-DIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK 157
P G +H GH L DI VRY R+KG +++ GTD G K EG
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK----EGRS 66
Query: 158 RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRL 216
E+ +++ I +R S D + R T + E F++
Sbjct: 67 PREIV------------DEFHEQIKITFQRAKISFDFFGR---TELPIHYKLSQEFFLKA 111
Query: 217 HEKGLIYQGSYMVNWSPN 234
+E G + + + +
Sbjct: 112 YENGHLVKKVTKQAYCEH 129
|
| >2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Length = 252 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 3e-10
Identities = 38/224 (16%), Positives = 69/224 (30%), Gaps = 58/224 (25%)
Query: 257 KYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHY------------------------ 292
+ G++ FL AT RPET+FG V P D Y
Sbjct: 22 LSGLKGKNIFLVAATLRPETMFGQTNCWVRP-DMKYIGFETVNGDIFICTQKAARNMSYQ 80
Query: 293 -----------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDH 335
+ +G P+T + + ++ + ++ GTGV+ P
Sbjct: 81 GFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSP 140
Query: 336 NDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTL 395
+D R L K L G+ + + L+ L
Sbjct: 141 DDIAALRDLK--------KKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDEL 192
Query: 396 RVPRSQRGG----EVIEPLVSK---QWFVTMEPLAEKALHAVEK 432
++ +SQ E E + K + + ++ + + V+K
Sbjct: 193 KI-QSQNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKVQDVKK 235
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 24/128 (18%)
Query: 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAA--EGI 156
P GS+H+GH + D+ VRY RM+G ++ D G ML A GI
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPI------MLKAQQLGI 80
Query: 157 KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIR 215
++ + + S D + T E+ + + R
Sbjct: 81 TPEQMI------------GEMSQEHQTDFAGFNISYDNYHS---THSEENRQLSELIYSR 125
Query: 216 LHEKGLIY 223
L E G I
Sbjct: 126 LKENGFIK 133
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 60/273 (21%), Positives = 95/273 (34%), Gaps = 69/273 (25%)
Query: 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL 450
P L P+S G S+ +F + +E G L E+ W
Sbjct: 179 SPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGAL---QEQVANKMQEWF 235
Query: 451 SN-IKDWCISRQL-WWGHRIP--------VW------YIVGKEEEYIVARNADEALEKAH 494
+ ++ W ISR ++G IP VW + G + R + ++ +
Sbjct: 236 ESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLM-GSFKNLCDKRGDSVSFDE-Y 293
Query: 495 QKYGKNVEIYQ--DPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF 552
K E+Y D++ F +L WP ML
Sbjct: 294 WKKDSTAELYHFIGKDIV---------YFLSLFWP-------------AML--------- 322
Query: 553 WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRF- 611
G F P S++++HG + G KMSK+ G I + F AD+LR+
Sbjct: 323 -------EGSNFR--KP-SNLFVHGYVT-VNGAKMSKSRGTFIKASTWLNHFDADSLRYY 371
Query: 612 -TISLGTAGQDLSLSIERLTA--NKAFTNKLWN 641
T L + D+ L++E N NK+ N
Sbjct: 372 YTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN 404
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 674 | |||
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 100.0 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 100.0 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 100.0 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 100.0 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 100.0 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 100.0 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 100.0 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 100.0 | |
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 100.0 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 100.0 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 100.0 | |
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 100.0 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 100.0 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 100.0 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 100.0 | |
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 100.0 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 100.0 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 100.0 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 100.0 | |
| 1wka_A | 147 | Valyl-tRNA synthetase; editing, CP1, fidelity, the | 100.0 | |
| 1wny_A | 186 | Isoleucyl-tRNA synthetase; ligase, structural geno | 100.0 | |
| 2ajg_A | 196 | Leucyl-tRNA synthetase; editing domain, ligase; 2. | 99.96 | |
| 3o0a_A | 219 | Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt | 99.96 | |
| 2wfg_A | 261 | Cytosolic leucyl-tRNA synthetase; ligase, editing | 99.94 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 99.94 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 99.94 | |
| 2wfd_A | 252 | Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN | 99.93 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 99.92 | |
| 3pz6_A | 311 | Leurs, leucyl-tRNA synthetase; editing domain, gll | 99.91 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 99.91 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 99.8 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 99.45 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 99.27 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 99.27 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 99.24 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 99.19 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 99.04 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 99.03 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 99.01 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 98.94 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 98.89 | |
| 4gri_A | 512 | Glutamate--tRNA ligase; structural genomics, seatt | 98.46 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 98.36 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 97.36 | |
| 2yxn_A | 322 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 96.18 | |
| 1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase; truncation, based | 96.0 | |
| 2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 | 95.95 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 95.77 | |
| 1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 95.76 | |
| 2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 95.75 | |
| 2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural g | 95.72 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 95.6 | |
| 1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR | 95.53 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 95.21 | |
| 2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas | 94.78 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 93.92 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 93.92 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 93.75 | |
| 3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP | 93.68 | |
| 2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st | 93.32 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 93.17 | |
| 2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, struc | 93.17 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 93.07 | |
| 3vgj_A | 373 | Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; | 92.64 | |
| 3tze_A | 406 | Tryptophanyl-tRNA synthetase; structural genomics, | 92.57 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 92.05 | |
| 1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA | 91.93 | |
| 3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin | 91.66 | |
| 2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthe | 91.64 | |
| 1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 91.6 | |
| 2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt | 91.45 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 90.73 | |
| 2cyc_A | 375 | Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy | 90.17 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 90.16 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 89.08 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 87.9 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 87.55 | |
| 3n9i_A | 346 | Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga | 86.39 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 85.3 | |
| 3sz3_A | 341 | Tryptophanyl-tRNA synthetase; structural genomics, | 85.14 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 84.59 | |
| 2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas | 82.52 | |
| 2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st | 82.26 | |
| 3a04_A | 372 | Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR | 81.74 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 80.72 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 80.3 | |
| 3prh_A | 388 | Tryptophanyl-tRNA synthetase; TRPRS, protein biosy | 80.04 |
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-144 Score=1275.28 Aligned_cols=604 Identities=48% Similarity=0.869 Sum_probs=563.8
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
.++.||+ ++|++||++|++ ++|++..+.++++|+|++|||||||.|||||+++++++|+++||+||+||+|+|++|||
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D 81 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD 81 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEB
T ss_pred CccCCChHHHHHHHHHHHHh-CCCccCcCCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccC
Confidence 5688999 899999999999 99999876678899999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHH
Q 005849 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (674)
|||+|+|.++++.+.++|++++++++++|++.||+|++++.+.|++||++||+++||+|+|+|+|++|.++++++|.+|+
T Consensus 82 ~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 161 (862)
T 1gax_A 82 HAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYY 161 (862)
T ss_dssp CCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccC
Q 005849 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297 (674)
Q Consensus 218 ~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G 297 (674)
++|+||++.++|+|||.|+|+|||+||+|++..+.++||+|++.+. .+++|||||||||+||+||+|||++++|++|+|
T Consensus 162 ~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~-~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G 240 (862)
T 1gax_A 162 HEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEVEGG-GFIEIATVRPETVFADQAIAVHPEDERYRHLLG 240 (862)
T ss_dssp TTSSEEEECCEEEEETTTTEEECGGGEEECCEEEEEEEEECCCSSS-CCCEEEESCSGGGTTCCCEEECSSCCTTCSCTT
T ss_pred HCCCEEecccccccCCCcCccccccccccccccceEEEEEEEecCC-CEEEEEeCCccccccceEEEECCCccHHHHHcC
Confidence 9999999999999999999999999999999999999999999875 799999999999999999999999999999999
Q ss_pred cEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccc--cccCCCCHHHHHH
Q 005849 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA--GLFRGLDRFEARK 375 (674)
Q Consensus 298 ~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~--g~~~g~~~~~ar~ 375 (674)
+++.+|++ ++.+||++++||++++|||+||+|||||++||+++++||||+++++|++|+++++| |.|.|+++++||+
T Consensus 241 ~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~ 319 (862)
T 1gax_A 241 KRARIPLT-EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARR 319 (862)
T ss_dssp CCCBCTTC-CCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHH
T ss_pred CEEECCCC-CCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHH
Confidence 99999995 89999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCC
Q 005849 376 KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKD 455 (674)
Q Consensus 376 ~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~D 455 (674)
.|+++|+++|++++.+++.|++|+|||||++|++++++|||++++++++++++++++++++|+|++.++++.+||++++|
T Consensus 320 ~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~D 399 (862)
T 1gax_A 320 KAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKD 399 (862)
T ss_dssp HHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred ceeecccCCCcccceeeecCCcccEEEeCChhHHHHH--HhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhh
Q 005849 456 WCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEK--AHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADD 533 (674)
Q Consensus 456 W~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~ 533 (674)
|||||||+||+|||+|+|++ ++...+.. .+++... ....||. ..+.|++|||||||||++||+++++||.+. ++
T Consensus 400 W~ISRqr~WG~pIP~w~~~~-~~~i~v~~-~~~l~~~~~~~~~~g~-~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~-~~ 475 (862)
T 1gax_A 400 WNISRQLWWGHQIPAWYCED-CQAVNVPR-PERYLEDPTSCEACGS-PRLKRDEDVFDTWFSSALWPLSTLGWPEET-ED 475 (862)
T ss_dssp CCCBCCCSSSCCCCCEEETT-TCCEECCC-GGGTTCCCCSCTTTCC-SCEEECCCCBCHHHHHTSCTTGGGTTTSCC-HH
T ss_pred eeEecccCCCcccCceecCC-CCEEEEec-cccccccchhhhhcCc-hheecCCcccceeeccCCcchhhccCCCch-HH
Confidence 99999999999999999975 33433332 2111100 0112332 368999999999999999999999999765 78
Q ss_pred hhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHH
Q 005849 534 FKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTI 613 (674)
Q Consensus 534 f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l 613 (674)
|++|||+|++++|+||+|+|+++|+++++.+.|+.||+++++||+++|.+|+|||||+||+|+|.|++++||+|++||||
T Consensus 476 ~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~l 555 (862)
T 1gax_A 476 LKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFAL 555 (862)
T ss_dssp HHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHH
T ss_pred HHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHhHHHHHh
Q 005849 614 SLG-TAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 614 ~~~-~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
++. ++++|++|+.+.+++.+++++++||+++|++.+++++.+. + ..+...|+|+++
T Consensus 556 l~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~-~-~~~~~~D~~il~ 612 (862)
T 1gax_A 556 IYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAK-E-DTPTLADRFMRS 612 (862)
T ss_dssp HHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC-B-CCCCHHHHHHHH
T ss_pred HhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc-c-ccCCHHHHHHHH
Confidence 986 4599999999999999999999999999999998776431 1 235667888875
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-134 Score=1198.93 Aligned_cols=602 Identities=27% Similarity=0.463 Sum_probs=544.7
Q ss_pred CCCCCCCCCCh-HHHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCee
Q 005849 55 NKDTLPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTL 131 (674)
Q Consensus 55 ~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~ 131 (674)
|...-|+.+|+ ++|++||++|+++++|++.. +.++++|+|++|||||||.|||||++|++++|+++||+||+||+|+
T Consensus 10 p~t~fpm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~ 89 (917)
T 1ffy_A 10 PKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAP 89 (917)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCC
T ss_pred CCCCCCCCCChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33344677999 89999999999999999854 3467889999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHH
Q 005849 132 WLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVE 211 (674)
Q Consensus 132 ~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~ 211 (674)
|++||||||+|||.++++. |+++.++++++|.+.|++|++++++.++++|++||+++||+++|.|+||+|++++++
T Consensus 90 ~~~GwD~hGlpiE~~a~k~----G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~ 165 (917)
T 1ffy_A 90 YVPGWDTHGLPIEQALTKK----GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIR 165 (917)
T ss_dssp CCCEEBCCSHHHHHHHHHH----TCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHH
T ss_pred CcccCchhhHHHHHHHHHc----CCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHH
Confidence 9999999999999888764 888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecC------CCceEEEeecCCCcccCCceEEe
Q 005849 212 AFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG------RSDFLTIATTRPETLFGDVALAV 285 (674)
Q Consensus 212 ~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~------~~~~l~v~Tt~Petl~~~~av~v 285 (674)
+|.+|+++|+||++.++|+|||.|+|+|||+||+|.+..++++|++|++.+ .+.+++|||||||||+||+||+|
T Consensus 166 ~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v 245 (917)
T 1ffy_A 166 IFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITV 245 (917)
T ss_dssp HHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCC
T ss_pred HHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccccCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEE
Confidence 999999999999999999999999999999999999999999999999976 36899999999999999999999
Q ss_pred CCC---------Cc-------------------hhh----------hccCcEEecCCCCCceeeeeecccccccCCCcce
Q 005849 286 NPQ---------DE-------------------HYS----------QFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (674)
Q Consensus 286 ~p~---------~~-------------------~y~----------~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v 327 (674)
||+ ++ +|+ +|+|+++.||+ .++++||++++||++++|||+|
T Consensus 246 ~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~-~~~~~pvi~~~~V~~~~GTG~V 324 (917)
T 1ffy_A 246 HPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF-LDRESLVINGDHVTTDAGTGCV 324 (917)
T ss_dssp CTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCT-TCCSBCCCCCCSSCCSSSCSCC
T ss_pred CCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCC-CCCeeeEEeccccccCCCCcee
Confidence 998 32 344 68999999999 5899999999999999999999
Q ss_pred eeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcc
Q 005849 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (674)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i 407 (674)
|+||+||++||+++++||||+++++|++|.+++++|.|+|+++++|++.|+++|+++|.+++.+++.|++|+||||++++
T Consensus 325 ~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv 404 (917)
T 1ffy_A 325 HTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPV 404 (917)
T ss_dssp CBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBC
T ss_pred EeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCCh-
Q 005849 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA- 486 (674)
Q Consensus 408 ~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~- 486 (674)
++++++|||+++++++++++++++ +++|+|++.++++.+||++++||||||||+||+|||+|+|++ +..++..+.
T Consensus 405 ~~r~t~QWFi~~~~lr~~~l~~i~--~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~--g~~~~~~~~~ 480 (917)
T 1ffy_A 405 IFRATPQWFASISKVRQDILDAIE--NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN--GEIIMTKETV 480 (917)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHHH--TSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTT--SCEECCHHHH
T ss_pred EEEeccceEeeHHHHHHHHHHHHh--cCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCC--CCEecCHHHH
Confidence 999999999999999999999998 599999999999999999999999999999999999999964 222222111
Q ss_pred ---hHHHHH--------------Hhh--hcC-C-CcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEE
Q 005849 487 ---DEALEK--------------AHQ--KYG-K-NVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLET 545 (674)
Q Consensus 487 ---~~~~~~--------------~~~--~~~-~-~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~ 545 (674)
.+.... ... .|. + ...+.+++||||||||||+++++.+++. .++ .||+|++++
T Consensus 481 ~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~----~~~--~~P~Dl~~~ 554 (917)
T 1ffy_A 481 NHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETR----PEL--SFPADMYLE 554 (917)
T ss_dssp HHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTS----TTC--CSSBSEEEE
T ss_pred HHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCc----hhc--CCCceEEEE
Confidence 111110 000 110 1 1368999999999999999998887643 233 399999999
Q ss_pred eehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccC
Q 005849 546 GHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLS 625 (674)
Q Consensus 546 G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs 625 (674)
|+||+++|+.++++.+.++.++.||+++++|||+++.+|+|||||+||+|+|.|++++||+|++|||+++.++++|++|+
T Consensus 555 G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~~~~~D~~fs 634 (917)
T 1ffy_A 555 GSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRIS 634 (917)
T ss_dssp EGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECC
T ss_pred EecccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhccCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997679999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 626 IERLTANKAFTNKLWNAGKFILQNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 626 ~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
.+.+++.++++++|||+++|+++|+.++++. .+.+.|...|+|+|+
T Consensus 635 ~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~ 683 (917)
T 1ffy_A 635 DEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLN 683 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHH
Confidence 9999999999999999999999999887631 234456778888875
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-132 Score=1176.22 Aligned_cols=603 Identities=27% Similarity=0.469 Sum_probs=544.3
Q ss_pred CCCCh-HHHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 61 KTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
+.||+ ++|++||++|+++++|++..+ .++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D 85 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccccccccc
Confidence 67999 899999999999999998653 467889999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCCc----cccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHH
Q 005849 138 HAGIATQLVVEKMLAAEGIKR----VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAF 213 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~~~~g~~~----~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 213 (674)
+||+|+|.++++.+ |.++ +++++++|.+.|++|++++.+.+++++++||+++||+++|.|+||+|+++++++|
T Consensus 86 ~~Glpie~~a~k~l---~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f 162 (821)
T 1ile_A 86 THGLPVELEVEKKL---GLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSL 162 (821)
T ss_dssp CCHHHHHHHHHHHT---TCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHh---cccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHH
Confidence 99999998887643 5543 3688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCceEEcccceeccCCCCcccccchhh--ccCCCCeeEEEEEeecCC------CceEEEeecCCCcccCCceEEe
Q 005849 214 IRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE--YSEEPGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVALAV 285 (674)
Q Consensus 214 ~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~--~~~~~~~~~~~kf~~~~~------~~~l~v~Tt~Petl~~~~av~v 285 (674)
.+|+++|+||++.++|+|||.|+|+|||+||+ |++..++++||+|++.+. +.+++|||||||||+||+||+|
T Consensus 163 ~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v 242 (821)
T 1ile_A 163 KNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAV 242 (821)
T ss_dssp HHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEE
T ss_pred HHHHHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEE
Confidence 99999999999999999999999999999995 899999999999999874 7899999999999999999999
Q ss_pred CCCC---------chh-----------------------hhccCcEEecCCCC--CceeeeeecccccccCCCcceeeCC
Q 005849 286 NPQD---------EHY-----------------------SQFIGMMAIVPMTY--GRHVPIISDKYVDKEFGTGVLKISP 331 (674)
Q Consensus 286 ~p~~---------~~y-----------------------~~l~G~~~~~P~~~--~~~vpii~~~~V~~~~GTG~v~~~P 331 (674)
||+. ++| ++|+|+.+.+|+.. ++.+||++++||++++|||+||+||
T Consensus 243 ~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~P 322 (821)
T 1ile_A 243 HPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAP 322 (821)
T ss_dssp CTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCT
T ss_pred CCCCceeEEEcCCcEEEehHHHHHHHHhhCcEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecC
Confidence 9994 444 47899999999963 7999999999999999999999999
Q ss_pred CCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccccee
Q 005849 332 GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411 (674)
Q Consensus 332 ~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~ 411 (674)
+||++||+++++||||+++++|++|+++++ | |+|+.++||++.|+++|+++|++++.+++.|++|+|||||+++++++
T Consensus 323 ah~~~D~~~~~~~~l~~~~~id~~G~~~~~-~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~ 400 (821)
T 1ile_A 323 AFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYA 400 (821)
T ss_dssp TSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEE
T ss_pred CCCHHHHHHHHHcCCCcceeECCCCcCccc-C-cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEe
Confidence 999999999999999999999999999988 7 99999999999999999999999999999999999999999999999
Q ss_pred eccccccchHHHHHHHHHHHhCCceEechhH-HHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHH
Q 005849 412 SKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL 490 (674)
Q Consensus 412 ~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~-~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~ 490 (674)
++|||++++++++++++++++ ++|+|+.. ++++.+||++++||||||||+||+|||+|+|++ ++...++.++.++.
T Consensus 401 ~~qWF~~~~~~~~~~~~~~~~--~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~-~~~~~vi~~~~~l~ 477 (821)
T 1ile_A 401 TESWFIKNTLFKDELIRNNQE--IHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQA-CGKEEAIGSFQELK 477 (821)
T ss_dssp CCEEEECGGGGHHHHHHHHHH--SEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESS-SSCCEECCSHHHHH
T ss_pred cchhhhchHHHHHHHHHHhcC--eEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecC-CCcEEeeCcHHHHH
Confidence 999999999999999999874 88999998 569999999999999999999999999999976 45566766776663
Q ss_pred HHHhh------------------hcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhh
Q 005849 491 EKAHQ------------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF 552 (674)
Q Consensus 491 ~~~~~------------------~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~ 552 (674)
..... .|.++..++|++|||||||||+++|++.++||.+.++.|++|||+|++++|+||+||
T Consensus 478 ~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~ 557 (821)
T 1ile_A 478 ARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRG 557 (821)
T ss_dssp HHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGT
T ss_pred hhccccccchhhhccccccccccCCCCCCchhhcccccceecccccchHhhcCCCccchHHHhhcCCcccccchhhhhcc
Confidence 31110 111234689999999999999999999999998766789999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCC-CCCccccCHHHHHH
Q 005849 553 WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT-AGQDLSLSIERLTA 631 (674)
Q Consensus 553 w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~-~~~d~~fs~~~l~~ 631 (674)
|+.++++++.++.++.||+++++||++++.+|+|||||+||+|+|.|++++||+|++||||++.+ +++|++|+.+.+.+
T Consensus 558 w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~ 637 (821)
T 1ile_A 558 WFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRE 637 (821)
T ss_dssp HHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999976 49999999999999
Q ss_pred -HHHHHHHHHHHHHHHH--hcCCCCCC-h-hHHHHHHHhHHHHHh
Q 005849 632 -NKAFTNKLWNAGKFIL--QNLPSQND-I-SRWEILLAYKVCVLT 671 (674)
Q Consensus 632 -~~~~~~kl~n~~~f~~--~~~~~~~~-~-~~~~~L~~~~~~~~~ 671 (674)
+++++++|||+++|+. .+++++.+ . .....+...|+|+++
T Consensus 638 ~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~ 682 (821)
T 1ile_A 638 TVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLA 682 (821)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCHHHHHHHH
Confidence 6899999999999865 23433322 0 011234455666653
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-116 Score=1050.10 Aligned_cols=573 Identities=23% Similarity=0.385 Sum_probs=477.7
Q ss_pred CCCCh-HHHHHHHHHHHhCCCCCCCCCCCC---CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 61 KTFDF-TSEERIYNWWESQGYFKPNFERGS---DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~---~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
+.||+ ++|++||++|+++++|++..+ ++ ++|+|++|||||||.|||||+++++++|+++||+||+||+|++++||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~Gw 80 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIR-DKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGG-GSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCcc-ccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcC
Confidence 56898 899999999999999998765 33 78999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHH-----------HcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCC--h
Q 005849 137 DHAGIATQLVVEKMLA-----------AEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD--E 203 (674)
Q Consensus 137 D~~Gl~~e~~ve~~~~-----------~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~--~ 203 (674)
||||+|+|.++++... ..|++..++ ++| ..|++|++++.+.++++|++||+++||+|+|+|+| |
T Consensus 81 D~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np 157 (967)
T 1wz2_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL--WTF-EDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFP 157 (967)
T ss_dssp BCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH--HGG-GSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSH
T ss_pred CCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH--HHH-HHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCCh
Confidence 9999999988764321 124433322 122 36899999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCC--eeEEEEEeecCC--CceEEEeecCCCcccC
Q 005849 204 QLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG--TLYYIKYRVAGR--SDFLTIATTRPETLFG 279 (674)
Q Consensus 204 ~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~--~~~~~kf~~~~~--~~~l~v~Tt~Petl~~ 279 (674)
.|.++++|+|.+|+++|+||++.++|+|||.|+|+|||+||++.+..+ ..++|+|++.+. +.+++|||||||||+|
T Consensus 158 ~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g 237 (967)
T 1wz2_A 158 PFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYG 237 (967)
T ss_dssp HHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGGGG
T ss_pred hHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCceeceeEEEEEEecCCCCceEEEEEcCCchHhhh
Confidence 999999999999999999999999999999999999999999976544 458899999874 3799999999999999
Q ss_pred CceEEeCCCC-------------c------------hh-------------hhccCcEEecCCCCCceeeeeeccccccc
Q 005849 280 DVALAVNPQD-------------E------------HY-------------SQFIGMMAIVPMTYGRHVPIISDKYVDKE 321 (674)
Q Consensus 280 ~~av~v~p~~-------------~------------~y-------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~ 321 (674)
|+||+|||+. + +| ++|+|+.+.+|++ ++++||++++||+++
T Consensus 238 ~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~-~~~ipi~~~~~V~~~ 316 (967)
T 1wz2_A 238 VTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVS-GDEVIILPAEFVDPD 316 (967)
T ss_dssp CCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSSS-SCEEEEEECSSCCSS
T ss_pred heEEEECCCCcEEEEEecCCCcceeeehHHHHHHHHHhhccCcEEEEEEEchhhcCCEEECCCC-CCceEEEecccccCC
Confidence 9999999993 2 12 2699999999995 789999999999999
Q ss_pred CCCcceeeCCCCChhhHHH----------HHHhCCC--------eeeeccC-----------------------------
Q 005849 322 FGTGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK----------------------------- 354 (674)
Q Consensus 322 ~GTG~v~~~P~h~~~D~~~----------~~~~~l~--------~~~~~~~----------------------------- 354 (674)
+|||+||+|||||++||++ +++|||| ++++++.
T Consensus 317 ~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a 396 (967)
T 1wz2_A 317 NATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQA 396 (967)
T ss_dssp STTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHH
T ss_pred CCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHH
Confidence 9999999999999999985 5788877 6766532
Q ss_pred ----------CCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce-eeccccccch--H
Q 005849 355 ----------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTME--P 421 (674)
Q Consensus 355 ----------~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~-~~~qwfi~~~--~ 421 (674)
+|.|+ +|.|+|+.++||++.|+++|+++|.+++.+.+.| +|+|+|||++++++ +++|||++++ +
T Consensus 397 ~~~~y~~~~~~G~~~--~g~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~~~qWFi~~~~~~ 473 (967)
T 1wz2_A 397 TKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPE 473 (967)
T ss_dssp TTHHHHHHHHSCBCC--SSSSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEECCCSSCEEEESCCTT
T ss_pred HHHhhhccccCceEe--ccCcCCcCHHHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEEEeccCCccceecCchH
Confidence 56666 7899999999999999999999999987665544 79999999999999 6999999998 4
Q ss_pred HHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccce---eeecCCccc--EE----EeCChhHHHHH
Q 005849 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YI----VARNADEALEK 492 (674)
Q Consensus 422 ~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~---~~~~~~~~~--~~----~~~~~~~~~~~ 492 (674)
++++++++++ +++|+|+..++++.+|+++++||||||||+||+|||+ |.++...++ |+ +++..+++.
T Consensus 474 ~k~~~l~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~-- 549 (967)
T 1wz2_A 474 WKEKARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLR-- 549 (967)
T ss_dssp HHHHHHHHHT--TSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhh--ccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHHH--
Confidence 9999999995 5899999999999999999999999999999999995 555422122 11 111111111
Q ss_pred HhhhcCCCcceEecCCeeeeeccC----Cc-cch-hccCCCCCC----hhhhhhcCCcceeEEeehhhhhHHHHHHHHhh
Q 005849 493 AHQKYGKNVEIYQDPDVLDTWFSS----AL-WPF-STLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGI 562 (674)
Q Consensus 493 ~~~~~~~~~~~~~~~dvld~Wfds----~~-~~~-~~~~~~~~~----~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~ 562 (674)
...+-+. -....+++|+||.+ +. +++ ...|+|... +++|++|||+|++++|+||+++|...+++++.
T Consensus 550 --~~~g~~~-~~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~ 626 (967)
T 1wz2_A 550 --QEGKLDP-EKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHV 626 (967)
T ss_dssp --HTTCCCG-GGCCHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHH
T ss_pred --HhcCCCh-HHcCcccceeeccCccccCccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHH
Confidence 1111100 01134788999865 21 111 134566432 36789999999999999999999888888888
Q ss_pred hhcCCCCc-ceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCCccccCHHHHHHHHHHHHHHH
Q 005849 563 EFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTANKAFTNKLW 640 (674)
Q Consensus 563 ~~~~~~Pf-~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs~~~l~~~~~~~~kl~ 640 (674)
++.+..|+ +++++||++++ +|+|||||+||+|+|.|++++||+|++||||++ +++++|++|+.+.++++.++++|+|
T Consensus 627 a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~ 705 (967)
T 1wz2_A 627 AIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFY 705 (967)
T ss_dssp HHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHH
T ss_pred HHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 88776555 89999999995 999999999999999999999999999999975 5559999999999999999999999
Q ss_pred HHHHHHHhc
Q 005849 641 NAGKFILQN 649 (674)
Q Consensus 641 n~~~f~~~~ 649 (674)
|+++++.++
T Consensus 706 n~~~~~~~~ 714 (967)
T 1wz2_A 706 ELISQFAEY 714 (967)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhcC
Confidence 999998765
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-111 Score=993.08 Aligned_cols=532 Identities=25% Similarity=0.428 Sum_probs=433.8
Q ss_pred CCCCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 58 TLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 58 ~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
.+++.||+ ++|++||++|+++++|++..+.++++|+|+++||||||.|||||+++++++|+++||+||+||+|++++||
T Consensus 20 ~m~~~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~ 99 (880)
T 4arc_A 20 HMQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGW 99 (880)
T ss_dssp -CCSSCCHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEE
T ss_pred cccccCChHHHHHHHHHHHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCc
Confidence 45788999 89999999999999999887667788999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHH
Q 005849 137 DHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (674)
Q Consensus 137 D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (674)
|+||+|+|.. +.+.|+++. +|++++++.|+++|++||+++||+++++|++++|.+.++++|.+|
T Consensus 100 D~~Glpie~~----a~~~g~~p~------------~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L 163 (880)
T 4arc_A 100 DAFGLPAEGA----AVKNNTAPA------------PWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTEL 163 (880)
T ss_dssp CCCSTHHHHH----HHHTTSCHH------------HHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHH
T ss_pred cccCcHHHHH----HHHcCCCHH------------HHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHH
Confidence 9999997654 455677654 678889999999999999999999999999999999999999999
Q ss_pred HHcCceEEcccceeccCCCCcccccchhh------------ccCC-----------------------------------
Q 005849 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVE------------YSEE----------------------------------- 249 (674)
Q Consensus 217 ~~kGliy~~~~~v~w~p~~~t~lsd~Ev~------------~~~~----------------------------------- 249 (674)
+++|+||++.++|+|||.|+|+|||+||. +++.
T Consensus 164 ~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~w 243 (880)
T 4arc_A 164 YKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNW 243 (880)
T ss_dssp HHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHH
T ss_pred HHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhh
Confidence 99999999999999999999999997774 2221
Q ss_pred --CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhc--------------------------------
Q 005849 250 --PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF-------------------------------- 295 (674)
Q Consensus 250 --~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l-------------------------------- 295 (674)
.+..++++|++.+.+.+|+|||||||||+|+++|+|||++++++.+
T Consensus 244 ig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 323 (880)
T 4arc_A 244 IGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGV 323 (880)
T ss_dssp HCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC----------------CEE
T ss_pred hccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeecc
Confidence 1235789999988888999999999999999999999999977543
Q ss_pred -cCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccC---------------CCccc
Q 005849 296 -IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK---------------DGTLN 359 (674)
Q Consensus 296 -~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~---------------~G~~~ 359 (674)
+|+.+.||++ ++++||+.++||++++|||+||+|||||++||+++++||||++++++. +|.+.
T Consensus 324 ~~g~~~~~P~~-~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ 402 (880)
T 4arc_A 324 DTGFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLF 402 (880)
T ss_dssp EEEEEEECTTT-CCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBC
T ss_pred ccCcEEecCCC-CCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceee
Confidence 6889999995 899999999999999999999999999999999999999999998853 34433
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEec
Q 005849 360 EVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMP 439 (674)
Q Consensus 360 e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P 439 (674)
++|.|.|++++||+++|++.|+++|++.+. +++
T Consensus 403 -ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~--------------------------------------------v~y-- 435 (880)
T 4arc_A 403 -NSGEFNGLDHEAAFNAIADKLTAMGVGERK--------------------------------------------VNY-- 435 (880)
T ss_dssp -SSGGGTTCCHHHHHHHHHHHHHHTTSEEEE--------------------------------------------EEE--
T ss_pred -cCcccCCCCHHHHHHHHHHHHHHcCCccee--------------------------------------------EEE--
Confidence 678999999999999999999999986442 111
Q ss_pred hhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChh--------------HHHHHHhh----hcCCCc
Q 005849 440 ERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD--------------EALEKAHQ----KYGKNV 501 (674)
Q Consensus 440 ~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~--------------~~~~~~~~----~~~~~~ 501 (674)
+++|||||||||||+|||+|+|++ ++...++.+.- ..+..... .|. +.
T Consensus 436 ------------rlrDW~iSRQRyWG~PIPi~~c~~-cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cp-g~ 501 (880)
T 4arc_A 436 ------------RLRDWGVSRQRYWGAPIPMVTLED-GTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVN-GM 501 (880)
T ss_dssp ------------SCCCEECEESCSSSCBCCEEEETT-SCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESS-SS
T ss_pred ------------EcccceeeeeeccCCcceEEEECC-CCeEeCChHHCccccchhcccCCCCCchHhCccceeeccC-CC
Confidence 478999999999999999999976 33333322110 01111111 222 55
Q ss_pred ceEecCCeeeeeccCCccchhccCCCCCC-----hhhhhhcCCcceeEEeeh--hhhhHHHHHH-----HHhhhhcCCCC
Q 005849 502 EIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHD--ILFFWVARMV-----MMGIEFTGSVP 569 (674)
Q Consensus 502 ~~~~~~dvld~Wfds~~~~~~~~~~~~~~-----~~~f~~~~P~d~~~~G~D--ii~~w~~~~~-----~~~~~~~~~~P 569 (674)
.++||+|||||||||+ |||+++++|+++ ++.+++|||+|++++|.| ++|+|++++. .+++ +.++.|
T Consensus 502 ~~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~-~~~~eP 579 (880)
T 4arc_A 502 PALRETDTFDTFMESS-WYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGM-VNSDEP 579 (880)
T ss_dssp EEEECCCEECTTTGGG-THHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTS-CCCSCS
T ss_pred cceeCCCcCCCcccCc-HHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhc-ccCCCC
Confidence 7899999999999997 999999999864 467888999999999987 5676666643 2233 466899
Q ss_pred cceeEeeeeEe-------CCCCc------------------------------------cccccCCCccChhhHHhhhCh
Q 005849 570 FSHVYLHGLIR-------DSQGR------------------------------------KMSKTLGNVIDPIDTIKEFGA 606 (674)
Q Consensus 570 f~~v~~hg~v~-------d~~G~------------------------------------KMSKS~gN~i~~~dll~~yga 606 (674)
|+++++||||+ |.+|+ |||||+||+|+|.|++++|||
T Consensus 580 Fk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGA 659 (880)
T 4arc_A 580 AKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGA 659 (880)
T ss_dssp EEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCH
T ss_pred hHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCc
Confidence 99999999996 78887 999999999999999999999
Q ss_pred hHHHHHHhcCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHhHHHHHh
Q 005849 607 DALRFTISLGT-AGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 607 D~lR~~l~~~~-~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
|++|||+++.+ +++|++|+.+.+++++++++|+||+++++........ .+...|...|+|+++
T Consensus 660 DalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~~~--~~~~~l~~~D~~ll~ 723 (880)
T 4arc_A 660 DTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVAA--LNVDALTENQKALRR 723 (880)
T ss_dssp HHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCCCC--CCSTTCCHHHHHHHH
T ss_pred hHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccccc--cccccCCHHHHHHHH
Confidence 99999999985 4999999999999999999999999998876532111 111234455666653
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-110 Score=986.77 Aligned_cols=572 Identities=23% Similarity=0.381 Sum_probs=473.4
Q ss_pred CCCCh-HHHHHHHHHHHhCCCCCCCCCC--CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 61 KTFDF-TSEERIYNWWESQGYFKPNFER--GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~~--~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
+.||+ ++|++||++|+++++|++..+. ++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccC
Confidence 56898 8999999999999999987653 36789999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHH----------H-HcCCCccccCHHHH--HHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCC--
Q 005849 138 HAGIATQLVVEKML----------A-AEGIKRVELSRDEF--TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD-- 202 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~----------~-~~g~~~~~l~~e~f--~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~-- 202 (674)
+||+|++..+++.. + ..|++ ++++ ...|++|++++.+.|+++|++||+++||+++|+|+|
T Consensus 82 ~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~ 156 (810)
T 1wkb_A 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVP-----EEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLF 156 (810)
T ss_dssp CCBSHHHHHHHHHHTTCHHHHHHHHHTSCCC-----HHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTS
T ss_pred CCCChHHHHHHHhcccCchHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCc
Confidence 99999988776421 0 11222 2332 236899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCC--eeEEEEEeecCCC--ceEEEeecCCCccc
Q 005849 203 EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG--TLYYIKYRVAGRS--DFLTIATTRPETLF 278 (674)
Q Consensus 203 ~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~--~~~~~kf~~~~~~--~~l~v~Tt~Petl~ 278 (674)
+.|.+.++++|.+|+++|+||++.++|+|||.|+|+|||+||++.+..+ ..++|+|++.+.+ .+++|||||||||+
T Consensus 157 ~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~ 236 (810)
T 1wkb_A 157 PPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVY 236 (810)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGG
T ss_pred hHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCCCCceEEEEEcCCchHhh
Confidence 9999999999999999999999999999999999999999999976554 4577999997743 78999999999999
Q ss_pred CCceEEeCCCCc-------------------------hh-------------hhccCcEEecCCCCCceeeeeecccccc
Q 005849 279 GDVALAVNPQDE-------------------------HY-------------SQFIGMMAIVPMTYGRHVPIISDKYVDK 320 (674)
Q Consensus 279 ~~~av~v~p~~~-------------------------~y-------------~~l~G~~~~~P~~~~~~vpii~~~~V~~ 320 (674)
|++||+|||+.+ +| ++|+|+.+.+|++ ++++||++++||++
T Consensus 237 g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~-~~~ipi~~~~~V~~ 315 (810)
T 1wkb_A 237 GVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVS-GDEVIILPAEFVDP 315 (810)
T ss_dssp GCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSSS-CCEEEEEECTTSCT
T ss_pred hhhEEEECCCCcEEEEEecCCCcceeeeeHHHHHHHHHhhhcceEEEEEEEchhhcCCEEECCCC-CCeeEEEecCcccC
Confidence 999999999942 12 3689999999995 89999999999999
Q ss_pred cCCCcceeeCCCCChhhHHH----------HHHhCCC--------eeeeccC----------------------------
Q 005849 321 EFGTGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK---------------------------- 354 (674)
Q Consensus 321 ~~GTG~v~~~P~h~~~D~~~----------~~~~~l~--------~~~~~~~---------------------------- 354 (674)
++|||+||+|||||++||++ +++|||| ++++++.
T Consensus 316 ~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~ 395 (810)
T 1wkb_A 316 DNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQ 395 (810)
T ss_dssp TSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHH
T ss_pred CCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhh
Confidence 99999999999999999986 4678877 7777632
Q ss_pred -----------CCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce-eeccccccchH-
Q 005849 355 -----------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTMEP- 421 (674)
Q Consensus 355 -----------~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~-~~~qwfi~~~~- 421 (674)
+|.++ +|.|+|+.+.+|++.|++.|+++|++.+.+.+.| +|+|+|||++++++ +++|||+++++
T Consensus 396 ~~~~~~~~~~~~G~~~--~g~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~~qwF~~~~~~ 472 (810)
T 1wkb_A 396 ATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNP 472 (810)
T ss_dssp HHHHHHHHHHHSCEEC--SGGGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEEEEEEECTTCH
T ss_pred hhhhhhhccccCceEe--ccCcCCeEHHHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEEEEecCCceeEecChH
Confidence 46665 7899999999999999999999999988776654 69999999999999 79999999995
Q ss_pred -HHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccce---eeecCCccc--EE----EeCChhHHHH
Q 005849 422 -LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YI----VARNADEALE 491 (674)
Q Consensus 422 -~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~---~~~~~~~~~--~~----~~~~~~~~~~ 491 (674)
++++++++++ +++|+|+..++++.+|+++++||||||||+||+|||+ |.++...++ |+ +++..+++.
T Consensus 473 ~~~~~~l~~~~--~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~- 549 (810)
T 1wkb_A 473 EWKEKARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLR- 549 (810)
T ss_dssp HHHHHHHHHHH--TSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhc--ccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhH-
Confidence 9999999996 5889999999999999999999999999999999993 555432222 11 111111110
Q ss_pred HHhhhcCCCcceEecCCeeeeeccC----Ccc-ch-hccCCCCCC----hhhhhhcCCcceeEEeehhhhhHHHHHHHHh
Q 005849 492 KAHQKYGKNVEIYQDPDVLDTWFSS----ALW-PF-STLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMG 561 (674)
Q Consensus 492 ~~~~~~~~~~~~~~~~dvld~Wfds----~~~-~~-~~~~~~~~~----~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~ 561 (674)
...+-.. -...++++|+||.+ +.+ +. ...|+|... +++|++|||+|++++|+||+++|...+++.+
T Consensus 550 ---~~~~~~~-~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~ 625 (810)
T 1wkb_A 550 ---QEGKLDP-EKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNH 625 (810)
T ss_dssp ---HTTCCCG-GGCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHH
T ss_pred ---hhcCCCH-HHcCccceeeeeccccccCccccchhhhCCCHHHHHhhHHHHHhhCCceEEeecccccccHHHHHHHHH
Confidence 0111000 01134688888853 211 11 134555321 3578899999999999999999988888888
Q ss_pred hhhcCCCCc-ceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCCccccCHHHHHHHHHHHHHH
Q 005849 562 IEFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTANKAFTNKL 639 (674)
Q Consensus 562 ~~~~~~~Pf-~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs~~~l~~~~~~~~kl 639 (674)
.++.+..|+ +++++||++++ +|+|||||+||+|+|.|++++||+|++||||++ +++++|++|+.+.++++.++++|+
T Consensus 626 ~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl 704 (810)
T 1wkb_A 626 VAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERF 704 (810)
T ss_dssp HHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHH
T ss_pred HHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHH
Confidence 877775444 89999999995 999999999999999999999999999999985 556999999999999999999999
Q ss_pred HHHHHHHHhc
Q 005849 640 WNAGKFILQN 649 (674)
Q Consensus 640 ~n~~~f~~~~ 649 (674)
||+++++.++
T Consensus 705 ~n~~~~~~~~ 714 (810)
T 1wkb_A 705 YELISQFAEY 714 (810)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 9999998764
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-109 Score=978.73 Aligned_cols=532 Identities=27% Similarity=0.435 Sum_probs=444.4
Q ss_pred CCCh-HHHHHHHHHHHhCCCCCCCC-CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCC
Q 005849 62 TFDF-TSEERIYNWWESQGYFKPNF-ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA 139 (674)
Q Consensus 62 ~~~~-~~E~~~~~~W~~~~~f~~~~-~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~ 139 (674)
.||+ ++|++||++|+++++|+... +.++++|+++++||||||.|||||+++++++|+++||+||+||+|++++|||+|
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~ 82 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAF 82 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCS
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCcccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcc
Confidence 6898 89999999999999999887 556778999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHc
Q 005849 140 GIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEK 219 (674)
Q Consensus 140 Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~k 219 (674)
|+|+|.++ .+.|+++ ++|++++++.|+++|++||+++||+++|.|++++|.+.++++|.+|+++
T Consensus 83 Glpie~~a----~k~g~~~------------~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~k 146 (878)
T 2v0c_A 83 GLPAENAA----LKFGVHP------------KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEK 146 (878)
T ss_dssp SHHHHHHH----HHTTCCH------------HHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHH----HHcCCCH------------HHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHC
Confidence 99977654 4457665 3788999999999999999999999999999999999999999999999
Q ss_pred CceEEcccceeccCCCCcccccchhhccCCC-------------------------------------------------
Q 005849 220 GLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP------------------------------------------------- 250 (674)
Q Consensus 220 Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~------------------------------------------------- 250 (674)
|+||++.++|+|||.|+|+|||+||++..+.
T Consensus 147 GliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~ 226 (878)
T 2v0c_A 147 GLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGR 226 (878)
T ss_dssp TCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCE
T ss_pred CCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhcc
Confidence 9999999999999999999999999753210
Q ss_pred CeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhc-----------------------------------
Q 005849 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF----------------------------------- 295 (674)
Q Consensus 251 ~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l----------------------------------- 295 (674)
+..++++|++.+.+.+|+|||||||||+|++||+|||+++++..+
T Consensus 227 s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 306 (878)
T 2v0c_A 227 SEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVF 306 (878)
T ss_dssp EEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEE
T ss_pred ccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEe
Confidence 134678899988889999999999999999999999999876543
Q ss_pred cCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCC---------cccc-----c
Q 005849 296 IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG---------TLNE-----V 361 (674)
Q Consensus 296 ~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G---------~~~e-----~ 361 (674)
+|+.+.||++ ++++||+.++||++++|||+||+|||||++||+++++||||++++++.+| .+++ +
T Consensus 307 ~g~~~~~P~~-~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~n 385 (878)
T 2v0c_A 307 LGAYALNPAT-GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVN 385 (878)
T ss_dssp EEEEEECTTT-CCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECS
T ss_pred cCcEEECCCC-CCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEec
Confidence 7889999994 89999999999999999999999999999999999999999999997532 2322 4
Q ss_pred ccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechh
Q 005849 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPER 441 (674)
Q Consensus 362 ~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~ 441 (674)
+|.|.|+++.||+++|++.|+++|++.+ .+++
T Consensus 386 s~~~~Gl~~~eA~~~Ii~~L~~~g~~~~--------------------------------------------~v~~---- 417 (878)
T 2v0c_A 386 SGPFDGTESEEGKRKVIAWLEEKGLGKG--------------------------------------------RVTY---- 417 (878)
T ss_dssp SGGGTTCBHHHHHHHHHHHHHHHTSEEE--------------------------------------------EEEE----
T ss_pred CCCCCCcCHHHHHHHHHHHHHHCCCCCC--------------------------------------------ceEE----
Confidence 6889999999999999999999998422 1111
Q ss_pred HHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeC--------ChhHH----------HHHHh----hhc-C
Q 005849 442 FEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVAR--------NADEA----------LEKAH----QKY-G 498 (674)
Q Consensus 442 ~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~--------~~~~~----------~~~~~----~~~-~ 498 (674)
+++|||||||||||+|||+|+|++ ++...+.. .+++. ..... ..| .
T Consensus 418 ----------rlrDW~ISRQR~WG~PIPi~~~~~-~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~ 486 (878)
T 2v0c_A 418 ----------RLRDWLISRQRYWGTPIPMVHCEA-CGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPK 486 (878)
T ss_dssp ----------SCCCEECEESCSSSEECCEEEETT-TEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTT
T ss_pred ----------ecccchhhcccccCCcccEEEECC-CCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCC
Confidence 578999999999999999999975 33332221 00111 00000 122 1
Q ss_pred CCcceEecCCeeeeeccCCccchhccCCCCCC-----hhhhhhcCCcceeEEeehh--hhhHHHHHHHH---hhh-hcCC
Q 005849 499 KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHDI--LFFWVARMVMM---GIE-FTGS 567 (674)
Q Consensus 499 ~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~-----~~~f~~~~P~d~~~~G~Di--i~~w~~~~~~~---~~~-~~~~ 567 (674)
++..++|++|||||||||+ ||++.+++|++. ++.+++|||+|++++|.|+ +|+|++++... ++. +.++
T Consensus 487 cg~~~~retDtmDtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~ 565 (878)
T 2v0c_A 487 CGGPAKRDTDTMDTFFDSS-WYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVE 565 (878)
T ss_dssp TCSEEEECCCEECHHHHHT-SHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCS
T ss_pred CCCcceecccccccccccc-chhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 2457999999999999997 999999999863 4678899999999999875 56666666432 222 4678
Q ss_pred CCcceeEeeeeEeCC----------------------------------------------CC-------ccccccCCCc
Q 005849 568 VPFSHVYLHGLIRDS----------------------------------------------QG-------RKMSKTLGNV 594 (674)
Q Consensus 568 ~Pf~~v~~hg~v~d~----------------------------------------------~G-------~KMSKS~gN~ 594 (674)
.||++|++|||++|. +| +|||||+||+
T Consensus 566 ~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNv 645 (878)
T 2v0c_A 566 EPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNG 645 (878)
T ss_dssp CSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCC
T ss_pred CchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCc
Confidence 999999999999973 99 9999999999
Q ss_pred cChhhHHhhhChhHHHHHHhc-CCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCChhHHHHHHHhHHHHHh
Q 005849 595 IDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLP-SQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 595 i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~-~~~~~~~~~~L~~~~~~~~~ 671 (674)
|+|.|++++||+|++|||+++ +++++|++|+.+.++++.++++|+||++++...++. ... ..+...|...|+|+++
T Consensus 646 VdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~-~~~~~~l~~~D~~ll~ 723 (878)
T 2v0c_A 646 VMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSG-VFQAEALEGKDRELYG 723 (878)
T ss_dssp CBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-CCCGGGCCHHHHHHHH
T ss_pred ccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhccccccc-ccCcccCCHHHHHHHH
Confidence 999999999999999999998 555999999999999999999999999988765431 111 1123345667888774
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-73 Score=650.24 Aligned_cols=389 Identities=21% Similarity=0.278 Sum_probs=321.7
Q ss_pred CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHH
Q 005849 87 RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEF 166 (674)
Q Consensus 87 ~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f 166 (674)
+..++|+|++|+|||||.||||||++++++|+++||+||+||+|+|++||||||+|||.+ +.++|++++
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~----a~k~g~~~~------- 74 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEA----AKQKQVSPY------- 74 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHH----HHHTTSCHH-------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHH----HHHcCCCHH-------
Confidence 346789999999999999999999999999999999999999999999999999996654 456788876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhc
Q 005849 167 TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 246 (674)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~ 246 (674)
++++++++.+++++++|||++||. +.|++++|.+.++++|.+|+++|+||++.++|+|||.|+|+|+|.||+.
T Consensus 75 -----e~~~~~~~~~~~~~~~lgi~~D~~--~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~ 147 (542)
T 3u1f_A 75 -----DFTTAVAGEFKKCFEQMDYSIDYF--IRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITD 147 (542)
T ss_dssp -----HHHHHHHHHHHHHHHHHTCCCSEE--EETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE
T ss_pred -----HHHHHHHHHHHHHHHHhCCccCcC--ccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhc
Confidence 577889999999999999999974 4599999999999999999999999999999999999999999987742
Q ss_pred cCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcc
Q 005849 247 SEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGV 326 (674)
Q Consensus 247 ~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~ 326 (674)
.
T Consensus 148 ~------------------------------------------------------------------------------- 148 (542)
T 3u1f_A 148 G------------------------------------------------------------------------------- 148 (542)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred eeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCc
Q 005849 327 LKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 406 (674)
Q Consensus 327 v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 406 (674)
| ++.| +.+++|+|||++
T Consensus 149 ---~----------------------~~~g--------------------------------------~~~~~~~~sg~~ 165 (542)
T 3u1f_A 149 ---V----------------------DKDG--------------------------------------NPCKVSLESGHV 165 (542)
T ss_dssp ---E----------------------CTTS--------------------------------------CEEEEETTTCCB
T ss_pred ---c----------------------cccC--------------------------------------ccccccCCCCCc
Confidence 0 1112 234789999999
Q ss_pred ccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhc-CCCceeecccC----CCcccceeeecCCcccEE
Q 005849 407 IEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN-IKDWCISRQLW----WGHRIPVWYIVGKEEEYI 481 (674)
Q Consensus 407 i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~iSRq~~----WG~piP~~~~~~~~~~~~ 481 (674)
++++.++|||++++++++++++.++++...+.|+..++.+.+|+++ ++|||||||++ ||+|+|..
T Consensus 166 ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~---------- 235 (542)
T 3u1f_A 166 VTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGN---------- 235 (542)
T ss_dssp EEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTE----------
T ss_pred ceeeccccceecchhHHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCC----------
Confidence 9999999999999999999999999999999999999999999964 99999999998 99999931
Q ss_pred EeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCC---------hhhhhhcCCcceeEEeehhhhh
Q 005849 482 VARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS---------ADDFKKFYPTTMLETGHDILFF 552 (674)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~---------~~~f~~~~P~d~~~~G~Dii~~ 552 (674)
+..++++|||+...+....++..+. .......||.|++++|+||++|
T Consensus 236 ------------------------~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~f 291 (542)
T 3u1f_A 236 ------------------------PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKF 291 (542)
T ss_dssp ------------------------EEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHH
T ss_pred ------------------------cCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEeccccccc
Confidence 1357888988876665554432221 0112235899999999999998
Q ss_pred HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH
Q 005849 553 WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA 631 (674)
Q Consensus 553 w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~ 631 (674)
|.....++.+.. +..|++.+++||++. .+|+|||||+||+|+|.|++++||+|+|||||++.++ ++|++|+++.+.+
T Consensus 292 h~~~~~a~l~~~-g~~~~~~v~~hg~l~-~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~ 369 (542)
T 3u1f_A 292 HAIYWPAFLLSA-GLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIA 369 (542)
T ss_dssp HHTHHHHHHHHH-TCCCCSCEEEECCCE-ETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHH
T ss_pred ccchhHHHHHhh-cccccceecccccee-cCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHH
Confidence 543333322222 445679999999975 7999999999999999999999999999999998665 9999999999987
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCCCC-hhHHHHHHHhHHHHHh
Q 005849 632 --NKAFTNKLWNAGKFILQNLPSQND-ISRWEILLAYKVCVLT 671 (674)
Q Consensus 632 --~~~~~~kl~n~~~f~~~~~~~~~~-~~~~~~L~~~~~~~~~ 671 (674)
++.++++|||++++++....+++. ......+...|+|+++
T Consensus 370 ~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~~~~d~~il~ 412 (542)
T 3u1f_A 370 RLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQ 412 (542)
T ss_dssp HHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHhhhcccCCCCccchhhHHHHHHHH
Confidence 345889999999998876554442 1233456667888764
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-73 Score=662.14 Aligned_cols=381 Identities=22% Similarity=0.292 Sum_probs=318.3
Q ss_pred CCEEEeCCCCCCCCCCCchhhHH-HHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMF-VTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~-~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
++|+|++|||||||.|||||+++ ++++|+++||+||+||+|+|++|||+||+|||.+++ ++|++++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~----k~G~~p~--------- 68 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL----KEGRSPR--------- 68 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHH----HHTCCHH---------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHH----HcCCCHH---------
Confidence 46999999999999999999998 999999999999999999999999999999877665 4488765
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
++++++++.|++++++|||++|| .+.|++++|.+.++++|.+|+++|+||++.++|+|||.|+|+|+|.+|+
T Consensus 69 ---e~~~~~~~~~~~~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~--- 140 (722)
T 1rqg_A 69 ---EIVDEFHEQIKITFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVI--- 140 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCC---
T ss_pred ---HHHHHHHHHHHHHHHHhCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcc---
Confidence 67899999999999999998886 3669999999999999999999999999999999999999999985441
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
||
T Consensus 141 --------------------------------------------------------------------------gt---- 142 (722)
T 1rqg_A 141 --------------------------------------------------------------------------GT---- 142 (722)
T ss_dssp --------------------------------------------------------------------------SB----
T ss_pred --------------------------------------------------------------------------cc----
Confidence 22
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
||.|+.+ +..|.+|++||.. .++.++..|+|+|||++++
T Consensus 143 -cP~c~~~----------------~~~Gd~c~~~G~~------------------------l~~~~l~~p~~~r~g~~v~ 181 (722)
T 1rqg_A 143 -CPYCGAE----------------DQKGDQCEVCGRP------------------------LTPEILINPRCAICGRPIS 181 (722)
T ss_dssp -CSSSCCS----------------CCCTTTCSSSCCC------------------------CCTTSSBSCBCTTTCCBCE
T ss_pred -cCccCCc----------------cCCcchhhhcccc------------------------cChhhccCCcccCCCcEeE
Confidence 6766553 3578888888753 1234567899999999999
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHH-hcCCCceeecccCCCcccceeeecCCcccEEEeCChh
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL-SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l-~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~ 487 (674)
++.++|||++++++++++++.++++. +|++.++++.+|| ++++|||||||++||+|||+|++..
T Consensus 182 ~~~~~qwF~~l~~~~~~l~~~~~~~~---wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~------------ 246 (722)
T 1rqg_A 182 FRDSAHYYIKMQDFAERLKRWIEKQP---WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDM------------ 246 (722)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHSSC---CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSS------------
T ss_pred EEEeccEEEEhHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHCCCcccceeccccCccccCccccCC------------
Confidence 99999999999999999999998653 5999999999999 8999999999999999999864311
Q ss_pred HHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccC-CCCC--ChhhhhhcCCc-c-----eeEEeehhhhhHHHHHH
Q 005849 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLG-WPDV--SADDFKKFYPT-T-----MLETGHDILFFWVARMV 558 (674)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~-~~~~--~~~~f~~~~P~-d-----~~~~G~Dii~~w~~~~~ 558 (674)
+.+++|+|||+.+.|++..+ |+.. ...+|++|||. | +++.|+||++||-....
T Consensus 247 ------------------~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wp 308 (722)
T 1rqg_A 247 ------------------KGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWP 308 (722)
T ss_dssp ------------------TTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHH
T ss_pred ------------------CCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhH
Confidence 24799999999888776543 2221 11358888873 3 89999999998432222
Q ss_pred HHhhhhc---------C-CCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHH
Q 005849 559 MMGIEFT---------G-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIE 627 (674)
Q Consensus 559 ~~~~~~~---------~-~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~ 627 (674)
++..+.. + .+| +++++|||+++ +|+|||||+||+|+|.|++++||+|++||||++..+ ++|++|+++
T Consensus 309 A~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~ 386 (722)
T 1rqg_A 309 AFLMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFS 386 (722)
T ss_dssp HHHHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHH
T ss_pred HHHhccCCCcccccccCCCCC-CEEEEeeeEEe-CCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHH
Confidence 2212221 2 578 99999999996 999999999999999999999999999999999855 999999999
Q ss_pred HHHH--HHHHHHHHHHHHHH
Q 005849 628 RLTA--NKAFTNKLWNAGKF 645 (674)
Q Consensus 628 ~l~~--~~~~~~kl~n~~~f 645 (674)
.+.. +.+++++++|++++
T Consensus 387 ~~~~~~n~~l~~~l~N~~~R 406 (722)
T 1rqg_A 387 DFKVRINEELVNNLGNFVHR 406 (722)
T ss_dssp HHHHHHHHTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 9987 44578888887654
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-69 Score=610.82 Aligned_cols=360 Identities=25% Similarity=0.405 Sum_probs=310.7
Q ss_pred CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHH
Q 005849 87 RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEF 166 (674)
Q Consensus 87 ~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f 166 (674)
.+++.|++++|+|||||.|||||+++++++|+++||+||+||+|++++|||+||++++.++ .++|+++.
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a----~~~g~~~~------- 77 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETA----AKEGIPAA------- 77 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHH----HHHTSCHH-------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHH----HHcCCCHH-------
Confidence 4567899999999999999999999999999999999999999999999999999976554 44587764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhc
Q 005849 167 TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 246 (674)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~ 246 (674)
++++++.+.+++++++|||++| ..+.|+++.|.+.++++|++|+++|+||++.++|+|||.|+|++++.|+++
T Consensus 78 -----~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~ 150 (524)
T 2x1l_A 78 -----ELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTE 150 (524)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE
T ss_pred -----HHHHHHHHHHHHHHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhcc
Confidence 5678889999999999999887 334599999999999999999999999999999999999999999977742
Q ss_pred cCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcc
Q 005849 247 SEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGV 326 (674)
Q Consensus 247 ~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~ 326 (674)
.+
T Consensus 151 g~------------------------------------------------------------------------------ 152 (524)
T 2x1l_A 151 QP------------------------------------------------------------------------------ 152 (524)
T ss_dssp CT------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred eeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccccc-CCCC
Q 005849 327 LKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQ-RGGE 405 (674)
Q Consensus 327 v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~-r~~~ 405 (674)
+| +.|+ +||+
T Consensus 153 ----------------------------~G-----------------------------------------~~c~~~~g~ 163 (524)
T 2x1l_A 153 ----------------------------DG-----------------------------------------TRIATETGA 163 (524)
T ss_dssp ----------------------------TS-----------------------------------------CEEETTTCC
T ss_pred ----------------------------CC-----------------------------------------CccccccCC
Confidence 01 1477 8999
Q ss_pred cccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHH-hcCCCceeecccC-CCcccceeeecCCcccEEEe
Q 005849 406 VIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL-SNIKDWCISRQLW-WGHRIPVWYIVGKEEEYIVA 483 (674)
Q Consensus 406 ~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l-~~l~DW~iSRq~~-WG~piP~~~~~~~~~~~~~~ 483 (674)
+++++.++|||++++++++++++.++++...+.|+..++.+.+|+ ++++||||||||. ||+|+| |.
T Consensus 164 ~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP-~~----------- 231 (524)
T 2x1l_A 164 PVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVP-DH----------- 231 (524)
T ss_dssp BEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEET-TE-----------
T ss_pred cceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCC-CC-----------
Confidence 999999999999999999999999987656688999999999999 5899999999985 999999 21
Q ss_pred CChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhh
Q 005849 484 RNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIE 563 (674)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~ 563 (674)
+.+|+||||||+++|++..+||.+....|+++||.|++++|+||++||.....++..+
T Consensus 232 ----------------------~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~ 289 (524)
T 2x1l_A 232 ----------------------PDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMS 289 (524)
T ss_dssp ----------------------EEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHH
T ss_pred ----------------------CCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhHhHHHHHHHHHHH
Confidence 1368999999999999999999876568999999999999999999865544333333
Q ss_pred hcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCCccccCHHHHHHHH--HHHHHHH
Q 005849 564 FTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTANK--AFTNKLW 640 (674)
Q Consensus 564 ~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs~~~l~~~~--~~~~kl~ 640 (674)
+ |..||+++++||++++ +|+|||||+||+|+|.|++++||+|++|||+++ .++++|++|+++.+.+.. +++++|+
T Consensus 290 ~-g~~~~~~v~~hG~v~~-~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~ 367 (524)
T 2x1l_A 290 A-GLPLPKRIFAHGWLLN-RGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELG 367 (524)
T ss_dssp H-TCCCCSCEEEECCEEE-CSCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCH
T ss_pred C-CCCCCcEEEECcEEEe-CCcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 3 4567799999999995 999999999999999999999999999999998 666999999999998754 3667788
Q ss_pred HHHHHHH
Q 005849 641 NAGKFIL 647 (674)
Q Consensus 641 n~~~f~~ 647 (674)
|+++++.
T Consensus 368 n~~~r~~ 374 (524)
T 2x1l_A 368 NLAQRSL 374 (524)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876644
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-69 Score=612.49 Aligned_cols=393 Identities=21% Similarity=0.298 Sum_probs=322.9
Q ss_pred CCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCc
Q 005849 79 GYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKR 158 (674)
Q Consensus 79 ~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~ 158 (674)
..|++....++++|+|+.|+|||||+|||||+|+++++|+++||+||+||+|++++|+|+||.+++. .+.+.|+++
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~----~a~~~g~~p 90 (564)
T 3kfl_A 15 QTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAE----AAAKQGVSP 90 (564)
T ss_dssp ---------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHH----HHHHTTCCH
T ss_pred hhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHH----HHHHcCCCH
Confidence 4577776667789999999999999999999999999999999999999999999999999998654 445678887
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcc
Q 005849 159 VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238 (674)
Q Consensus 159 ~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~ 238 (674)
+ ++++++.+.+++++++|||++|+ .+.|+++.|.+.++++|.+|+++|+||++...++||+.|+++
T Consensus 91 ~------------~~~~~~~~~~~~~~~~lgi~~D~--~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~ 156 (564)
T 3kfl_A 91 M------------DFTTSVSSEFKQCFQEMNYDMNY--FIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESF 156 (564)
T ss_dssp H------------HHHHHHHHHHHHHHHHTTCCCSE--EEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEE
T ss_pred H------------HHHHHHHHHHHHHHHHcCCCCCc--cccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCC
Confidence 6 56788999999999999999992 345999999999999999999999999999999999999999
Q ss_pred cccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccc
Q 005849 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYV 318 (674)
Q Consensus 239 lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V 318 (674)
+++.|+...
T Consensus 157 l~~~~~~~~----------------------------------------------------------------------- 165 (564)
T 3kfl_A 157 LTAQNVADG----------------------------------------------------------------------- 165 (564)
T ss_dssp ECGGGEEEE-----------------------------------------------------------------------
T ss_pred CCHHHhccC-----------------------------------------------------------------------
Confidence 999777421
Q ss_pred cccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccc
Q 005849 319 DKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 398 (674)
Q Consensus 319 ~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p 398 (674)
|| .+|..| +
T Consensus 166 -----------~~----------------------~~g~~c---~----------------------------------- 174 (564)
T 3kfl_A 166 -----------VD----------------------RDGKPC---K----------------------------------- 174 (564)
T ss_dssp -----------EC----------------------TTSCEE---E-----------------------------------
T ss_pred -----------cC----------------------CCCCEe---c-----------------------------------
Confidence 00 112111 0
Q ss_pred cccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeec----ccCCCcccceeee
Q 005849 399 RSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR----QLWWGHRIPVWYI 473 (674)
Q Consensus 399 ~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSR----q~~WG~piP~~~~ 473 (674)
.|-+||++++++.++|||++++++++.+++.++++...+.|+..++.+.+||+ +++|||||| +++||+|||.
T Consensus 175 ~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~--- 251 (564)
T 3kfl_A 175 VSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPG--- 251 (564)
T ss_dssp EETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT---
T ss_pred cccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCC---
Confidence 01247999999999999999999999999999987777899999999999996 899999999 8999999992
Q ss_pred cCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCC-CCCChh-----hh--hhcCCcceeEE
Q 005849 474 VGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGW-PDVSAD-----DF--KKFYPTTMLET 545 (674)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~-~~~~~~-----~f--~~~~P~d~~~~ 545 (674)
.+.+|+||||||+++|++.++| +.+... +| +++||+|++++
T Consensus 252 -------------------------------~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~ 300 (564)
T 3kfl_A 252 -------------------------------DERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVV 300 (564)
T ss_dssp -------------------------------EEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEE
T ss_pred -------------------------------CCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEE
Confidence 1357999999999999999988 765422 37 89999999999
Q ss_pred eehhhhh----HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCC
Q 005849 546 GHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQ 620 (674)
Q Consensus 546 G~Dii~~----w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~ 620 (674)
|+||++| |+++++++ |..|+++|++||++ +.+|+|||||+||+|+|.|++++||+|++||||++ .++.+
T Consensus 301 GkDii~FH~~~wpa~L~a~-----g~~~~~~v~~hg~v-~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~ 374 (564)
T 3kfl_A 301 GKDILKFHAIYWPAFLMSA-----ELPLPERLVSHGWW-TKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQD 374 (564)
T ss_dssp EGGGHHHHHTHHHHHHHHT-----TCCCCSCEEEECCE-EETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSC
T ss_pred eecccchHHHHHHHHHHhC-----CCCCCcEEEEcccE-eeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCccc
Confidence 9999998 55554443 34577999999999 59999999999999999999999999999999999 45599
Q ss_pred ccccCHHHHHH--HHHHHHHHHHHHHHHHhcCCCCCChh-HHHHHHHhHHHHHh
Q 005849 621 DLSLSIERLTA--NKAFTNKLWNAGKFILQNLPSQNDIS-RWEILLAYKVCVLT 671 (674)
Q Consensus 621 d~~fs~~~l~~--~~~~~~kl~n~~~f~~~~~~~~~~~~-~~~~L~~~~~~~~~ 671 (674)
|++|+++.+.+ +.+++++|+|+++++...+..++... ....+...|+|+++
T Consensus 375 D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~g~~p~~~~~~~~d~~ll~ 428 (564)
T 3kfl_A 375 DGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGMWPEPAEYSESDKTLIA 428 (564)
T ss_dssp CEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHH
Confidence 99999999987 45689999999998876543332111 11234455666653
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-68 Score=602.27 Aligned_cols=375 Identities=26% Similarity=0.392 Sum_probs=309.2
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
+++|+|+.|+|||||+|||||+|+++++|+++||+|++||+|.+++|+|+||.+++.. +.+.|.+++
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~----a~~~g~~~~--------- 90 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQS----ARKEGITPR--------- 90 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHH----HHHHTSCHH---------
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHH----HHHcCCCHH---------
Confidence 5689999999999999999999999999999999999999999999999999996544 456688775
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
++++++.+.++++|++|||.+| ..+.|+++.|.+.++++|.+|+++|+||++.++++||+.|++++++.|++..+
T Consensus 91 ---~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (536)
T 4dlp_A 91 ---DLADRNTSAFRRMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRA 165 (536)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECT
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCC
Confidence 5678899999999999999988 33459999999999999999999999999999999999999999997764210
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
T Consensus 166 -------------------------------------------------------------------------------- 165 (536)
T 4dlp_A 166 -------------------------------------------------------------------------------- 165 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
+| -.|++||++++
T Consensus 166 --------------------------~g-----------------------------------------~~c~~~g~~~e 178 (536)
T 4dlp_A 166 --------------------------DG-----------------------------------------VRYGPQGTPVE 178 (536)
T ss_dssp --------------------------TS-----------------------------------------CEECTTSSBCE
T ss_pred --------------------------CC-----------------------------------------CcccCCCCcce
Confidence 11 14788999999
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeeccc-CCCcccceeeecCCcccEEEeCCh
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNA 486 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSRq~-~WG~piP~~~~~~~~~~~~~~~~~ 486 (674)
++.++|||++++++++++++.++++...+.|+..++.+.+|++ +++|||||||+ +||+|||. +
T Consensus 179 ~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~----~----------- 243 (536)
T 4dlp_A 179 WVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPG----D----------- 243 (536)
T ss_dssp EEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTT----C-----------
T ss_pred EEeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCC----C-----------
Confidence 9999999999999999999999987777899999999999996 79999999985 69999992 1
Q ss_pred hHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhh----HHHHHHHHhh
Q 005849 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVMMGI 562 (674)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~----w~~~~~~~~~ 562 (674)
+.+|+||||||+++|++.++||... .+|+++||.|++++|+||++| |+++++++
T Consensus 244 -------------------~~~v~yvWfda~~~y~s~~~~~~~~-~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~-- 301 (536)
T 4dlp_A 244 -------------------EKHVMYVWVDALTNYITALGYPDTT-DERWAYWPANAHIIGKDISRFHAVYWPAFLMSA-- 301 (536)
T ss_dssp -------------------TTSEECHHHHHHHHHHHTTTTTCTT-SGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHT--
T ss_pred -------------------CCCceEEeeCCcHHHHHhcCCCCCc-hHHHhhCCcceEEeechHHHHHHHHHHHHHHHC--
Confidence 3589999999999999999999766 689999999999999999998 55554442
Q ss_pred hhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcC-CCCCccccCHHHHHH--HHHHHHHH
Q 005849 563 EFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG-TAGQDLSLSIERLTA--NKAFTNKL 639 (674)
Q Consensus 563 ~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~-~~~~d~~fs~~~l~~--~~~~~~kl 639 (674)
+..|+++|++||+++ .+|+|||||+||+|+|.|++++||+|++||||++. ++.+|++|+++.+.+ +.++++++
T Consensus 302 ---g~~~~~~v~~hg~v~-~~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l 377 (536)
T 4dlp_A 302 ---QLPLPKRVFAHGFLF-NRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDL 377 (536)
T ss_dssp ---TCCCCSCEEEECCEE-C------------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCC
T ss_pred ---CCCCCcEEEeeeeEe-eCCceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 345779999999998 49999999999999999999999999999999994 559999999999977 45688899
Q ss_pred HHHHHHH----HhcCCCCCChhHHHHHHHhHHHHHh
Q 005849 640 WNAGKFI----LQNLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 640 ~n~~~f~----~~~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
+|+++++ ..++.+..+. ...+...|+|+++
T Consensus 378 ~N~~~R~~~~~~~~~~~~~p~--~~~~~~~d~~ll~ 411 (536)
T 4dlp_A 378 GNLAQRSLSMIAKNCEGKVPQ--PGAFSEADKAILD 411 (536)
T ss_dssp HHHHHHHHHHHHHHSTTBCCC--CCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCC--cccCCHHHHHHHH
Confidence 9987654 3445443331 1234566777764
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-68 Score=610.08 Aligned_cols=379 Identities=23% Similarity=0.385 Sum_probs=321.8
Q ss_pred CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHH
Q 005849 86 ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDE 165 (674)
Q Consensus 86 ~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~ 165 (674)
+.++++|+|+.|||||||+|||||+++++++|+++||+||+||+|++++|||+||++++..++ +.|++++
T Consensus 14 ~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~----~~g~~~~------ 83 (560)
T 3h99_A 14 TQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ----QLGITPE------ 83 (560)
T ss_dssp ---CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHH----HHTSCHH------
T ss_pred CCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHH----HhCCCHH------
Confidence 346788999999999999999999999999999999999999999999999999999766554 4577765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhh
Q 005849 166 FTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE 245 (674)
Q Consensus 166 f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~ 245 (674)
++++++.+.|+++|++|||++| +.+.|+++.|.+.++++|.+|+++|+||++.+.++||+.|+|+|++.+|+
T Consensus 84 ------~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~ 155 (560)
T 3h99_A 84 ------QMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVK 155 (560)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE
T ss_pred ------HHHHHHHHHHHHHHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcC
Confidence 4567888999999999999776 45669999999999999999999999999999999999999999986552
Q ss_pred ccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCc
Q 005849 246 YSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTG 325 (674)
Q Consensus 246 ~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG 325 (674)
|
T Consensus 156 -----------------------------------------------------------------------------g-- 156 (560)
T 3h99_A 156 -----------------------------------------------------------------------------G-- 156 (560)
T ss_dssp -----------------------------------------------------------------------------E--
T ss_pred -----------------------------------------------------------------------------C--
Confidence 1
Q ss_pred ceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCC
Q 005849 326 VLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGE 405 (674)
Q Consensus 326 ~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~ 405 (674)
.||.|+.. ++.|..|++||.+ ..+.+...|+|++||+
T Consensus 157 ---~cp~c~~~----------------~~~gd~ce~cg~~------------------------~~~~~l~~~~~~~~g~ 193 (560)
T 3h99_A 157 ---TCPKCKSP----------------DQYGDNCEVCGAT------------------------YSPTELIEPKSVVSGA 193 (560)
T ss_dssp ---ECTTTCCS----------------SEETTBCTTTCCB------------------------CCGGGCEEEEETTTCC
T ss_pred ---CCCCCCCc----------------ccccchhhhcccc------------------------CChhhhcCCccccCCC
Confidence 26666542 4678899999964 2233556799999999
Q ss_pred cccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeeccc-CCCcccceeeecCCcccEEEe
Q 005849 406 VIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVA 483 (674)
Q Consensus 406 ~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSRq~-~WG~piP~~~~~~~~~~~~~~ 483 (674)
+++++.++|||++++++++.+++.++++ .+|+..++.+.+|++ +++|||||||+ +||+|||. +
T Consensus 194 ~~~~~~~~~~f~~l~~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~----~-------- 258 (560)
T 3h99_A 194 TPVMRDSEHFFFDLPSFSEMLQAWTRSG---ALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPN----A-------- 258 (560)
T ss_dssp CCEEEEEEEEEECGGGGHHHHHHHHHTS---CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTT----C--------
T ss_pred CceEEecceEEEEHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCC----C--------
Confidence 9999999999999999999999999863 367788999999997 89999999999 89999993 1
Q ss_pred CChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhcc-CCCCCC--hhhhhhcCCcc-----eeEEeehhhhh---
Q 005849 484 RNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDVS--ADDFKKFYPTT-----MLETGHDILFF--- 552 (674)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~-~~~~~~--~~~f~~~~P~d-----~~~~G~Dii~~--- 552 (674)
+.+|+|||||+.++|++.. +|+.+. ..+|++|||.| +++.|+||+++
T Consensus 259 ----------------------~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~ 316 (560)
T 3h99_A 259 ----------------------PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSL 316 (560)
T ss_dssp ----------------------TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHT
T ss_pred ----------------------CCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHH
Confidence 2579999999998887765 344321 15799999999 99999999994
Q ss_pred -HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-C-CccccCHHHH
Q 005849 553 -WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-G-QDLSLSIERL 629 (674)
Q Consensus 553 -w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~-~d~~fs~~~l 629 (674)
|++.+++++ ..+| +++++||++++ +|+|||||+||+|+|.|++++||+|++||||++..+ . +|++|+++.+
T Consensus 317 ~~~a~l~~~g----~~~p-~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~ 390 (560)
T 3h99_A 317 FWPAMLEGSN----FRKP-SNLFVHGYVTV-NGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDF 390 (560)
T ss_dssp HHHHHHHHTT----BCCC-SEEEEECCEEE-TTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHH
T ss_pred HHHHHHHhCC----CCCC-cEEEEEeEEEe-CCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHH
Confidence 555444433 2567 89999999995 999999999999999999999999999999999776 6 8999999998
Q ss_pred HH--HHHHHHHHHHHHHHHH
Q 005849 630 TA--NKAFTNKLWNAGKFIL 647 (674)
Q Consensus 630 ~~--~~~~~~kl~n~~~f~~ 647 (674)
.. ++++++++||++.++.
T Consensus 391 ~~~~~~~l~~~l~n~~~R~~ 410 (560)
T 3h99_A 391 VQRVNADIVNKVVNLASRNA 410 (560)
T ss_dssp HHHHHHHCCCCCTHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 75 6788999999875543
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-67 Score=594.22 Aligned_cols=351 Identities=27% Similarity=0.381 Sum_probs=304.6
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
++|+|+.|+|||||.|||||+++++++|+++||+||+||+|++++|||+||++++.++ .++|+++.
T Consensus 3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a----~~~g~~~~---------- 68 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAA----QAAGEDPK---------- 68 (500)
T ss_dssp CEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHH----HHHTSCHH----------
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHH----HHcCCCHH----------
Confidence 5799999999999999999999999999999999999999999999999999965544 44587765
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCC
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
++++++.+.+++++++||+++| ..+.|+++.|.+.++++|++|+++|+||++.++++|||.|+|++++.|+.
T Consensus 69 --~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~---- 140 (500)
T 2d5b_A 69 --AFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV---- 140 (500)
T ss_dssp --HHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB----
T ss_pred --HHHHHHHHHHHHHHHHhCCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc----
Confidence 5678899999999999999887 34669999999999999999999999999999999999999999874331
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
T Consensus 141 -------------------------------------------------------------------------------- 140 (500)
T 2d5b_A 141 -------------------------------------------------------------------------------- 140 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
.+.|+|||.+++.
T Consensus 141 -------------------------------------------------------------------~g~c~~~~~~v~~ 153 (500)
T 2d5b_A 141 -------------------------------------------------------------------EGLCPIHGRPVER 153 (500)
T ss_dssp -------------------------------------------------------------------TTBCTTTCSBCEE
T ss_pred -------------------------------------------------------------------CCcCCCCCCeeeE
Confidence 0248999999999
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeec--cc-CCCcccceeeecCCcccEEEeCC
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR--QL-WWGHRIPVWYIVGKEEEYIVARN 485 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSR--q~-~WG~piP~~~~~~~~~~~~~~~~ 485 (674)
+.++|||++++++++.+++.++++...+.|+..++.+.+|++ +++|||||| |+ +||+|+|. +
T Consensus 154 ~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~--~------------ 219 (500)
T 2d5b_A 154 RKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPW--D------------ 219 (500)
T ss_dssp EEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETT--E------------
T ss_pred EecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCC--C------------
Confidence 999999999999999999999876656789999999999994 689999999 66 69999993 1
Q ss_pred hhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhc
Q 005849 486 ADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT 565 (674)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~ 565 (674)
+++|+||||||+++|++..+|+.+. +|+++||.|++++|+||+++|.....++..++
T Consensus 220 --------------------~~~v~~vWfds~~~y~~~~g~~~~~--~~~~~~p~di~~~G~D~~~fh~~~~~a~~~~~- 276 (500)
T 2d5b_A 220 --------------------ENHVTFVWFDALLNYVSALDYPEGE--AYRTFWPHAWHLIGKDILKPHAVFWPTMLKAA- 276 (500)
T ss_dssp --------------------EEEEECHHHHHHTHHHHTTTTTTCH--HHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHH-
T ss_pred --------------------CCCeeEEccccchhhHHHcCCCCCc--hHHHcCCCeEEEEeechhhhHHHHHHHHHHHc-
Confidence 2479999999999999999998763 38889999999999999996554333332223
Q ss_pred CCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCCccccCHHHHHHH--HHHHHHHHHH
Q 005849 566 GSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTAN--KAFTNKLWNA 642 (674)
Q Consensus 566 ~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs~~~l~~~--~~~~~kl~n~ 642 (674)
|..|++++++||++++.+|+|||||+||+|+|.|++++||+|++|||+++ .++++|++|+++.+.+. +++.++++|+
T Consensus 277 g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~ 356 (500)
T 2d5b_A 277 GIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNL 356 (500)
T ss_dssp TCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHH
T ss_pred CCCCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999977999999999999999999999999999999998 56699999999999873 3466777887
Q ss_pred HHHH
Q 005849 643 GKFI 646 (674)
Q Consensus 643 ~~f~ 646 (674)
..++
T Consensus 357 ~~r~ 360 (500)
T 2d5b_A 357 VQRT 360 (500)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-65 Score=574.96 Aligned_cols=349 Identities=24% Similarity=0.340 Sum_probs=269.7
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
+++|+|+.|+|||||.|||||+++++++|+++||+||+||+|++++|||+||++++.+ +.++|++++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~----a~~~g~~~~--------- 70 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKK----AEELGISPK--------- 70 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTH----HHHSSSCHH---------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHH----HHHcCCCHH---------
Confidence 4679999999999999999999999999999999999999999999999999996554 455687765
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
++++++.+.|++++++|||++| ..+.|+++.|.+.++++|++|+++|+||++.++++|||.|+|++++.|+..
T Consensus 71 ---~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~-- 143 (497)
T 2csx_A 71 ---ELVDRNAERFKKLWEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAE-- 143 (497)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------
T ss_pred ---HHHHHHHHHHHHHHHHhCCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhcc--
Confidence 5678899999999999999776 456699999999999999999999999999999999999999998754410
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
T Consensus 144 -------------------------------------------------------------------------------- 143 (497)
T 2csx_A 144 -------------------------------------------------------------------------------- 143 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
.+.|+|||.+++
T Consensus 144 --------------------------------------------------------------------~~~c~~~~~~~~ 155 (497)
T 2csx_A 144 --------------------------------------------------------------------DHTCPIHQKKCE 155 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------CCCCCCCCCCCe
Confidence 035899999999
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeec--cc-CCCcccceeeecCCcccEEEeC
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR--QL-WWGHRIPVWYIVGKEEEYIVAR 484 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSR--q~-~WG~piP~~~~~~~~~~~~~~~ 484 (674)
.+.++|||++++++++++++.++++...+.|+..++.+.+|++ +++|||||| |+ +||+|+|. +
T Consensus 156 ~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~--~----------- 222 (497)
T 2csx_A 156 YIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPF--D----------- 222 (497)
T ss_dssp --CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETT--E-----------
T ss_pred EEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCC--C-----------
Confidence 9999999999999999999999887667789999999999995 799999999 66 69999994 1
Q ss_pred ChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhh
Q 005849 485 NADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEF 564 (674)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~ 564 (674)
++++++|||||++.|.+.. +.+ .. ++||.|++++|+||+++|.....++..++
T Consensus 223 ---------------------~~~~i~vW~ds~~~~~s~~--~~~--~~--~~~p~di~~~G~D~~~~H~~~~~a~l~~~ 275 (497)
T 2csx_A 223 ---------------------PEHTIYVWFDALFNYISAL--EDK--VE--IYWPADLHLVGKDILRFHTVYWPAFLMSL 275 (497)
T ss_dssp ---------------------EEEEECSHHHHHTHHHHTT--TTT--HH--HHCSCSCEEEEGGGHHHHHTHHHHHHHHH
T ss_pred ---------------------CCceEEEecccchhhcccC--CCc--ch--hhCCceEEEeecchhHhHHHHHHHHHHHc
Confidence 1468999999998877655 211 11 66799999999999996554433332223
Q ss_pred cCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCCccccCHHHHHHHH--HHHHHHHH
Q 005849 565 TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTANK--AFTNKLWN 641 (674)
Q Consensus 565 ~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs~~~l~~~~--~~~~kl~n 641 (674)
|..|++++++||++++ +|+|||||+||+|+|.|++++||+|++|||+++ .++++|++|+++.+.+.. .++++++|
T Consensus 276 -g~~~~~~~~~~G~v~~-~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n 353 (497)
T 2csx_A 276 -GYELPKKVFAHGWWTV-EGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGN 353 (497)
T ss_dssp -TCCCCSCEEEECCEES-SSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHH
T ss_pred -CCCCCcEEEECcEEEe-CCceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHH
Confidence 5568899999999995 999999999999999999999999999999998 556999999999998743 35566777
Q ss_pred HHHHHH
Q 005849 642 AGKFIL 647 (674)
Q Consensus 642 ~~~f~~ 647 (674)
++.++.
T Consensus 354 ~~~R~~ 359 (497)
T 2csx_A 354 LYSRVV 359 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=397.89 Aligned_cols=325 Identities=20% Similarity=0.244 Sum_probs=241.8
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
++.+....|||+|.+||||+|+++++|+++||+|++||+|.++.|+|++|.++ ++.+.+.|.++.
T Consensus 25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKI----i~~A~~~g~~~~----------- 89 (462)
T 3tqo_A 25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKI----IKRAGENKESPA----------- 89 (462)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHH----HHHHHHTTSCHH-----------
T ss_pred eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHH----HHHHHHcCCCHH-----------
Confidence 44454456899999999999999999999999999999999999999999884 445566787754
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc-ccceeccCCCCcccccchhhccCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~-~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
++++++.+.+++++++|||+.|+..+..| +|...++++|++|+++|++|++ ...|+||+.+-.
T Consensus 90 -e~a~~~~~~f~~d~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~------------ 153 (462)
T 3tqo_A 90 -ALAERFIQILHEDEKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFK------------ 153 (462)
T ss_dssp -HHHHHHHHHHHHHHHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCT------------
T ss_pred -HHHHHHHHHHHHHHHHcCCCCCccccChh---hHHHHHHHHHHHHHHCCCEEEecCCcEEecccccc------------
Confidence 77899999999999999999997664444 7999999999999999999999 789999987531
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
.|..|.++... ++..|+.+-..
T Consensus 154 -----------------------------------------~yg~Ls~~~~~-----------------~~~~g~r~~~~ 175 (462)
T 3tqo_A 154 -----------------------------------------DYGKLSHRHLD-----------------ELQAGARVEVS 175 (462)
T ss_dssp -----------------------------------------TTTTTTTCSCC----------------------------
T ss_pred -----------------------------------------ccccccCCChH-----------------HhhccCccccc
Confidence 11111111100 00001000000
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
.--.++.||.++ +..+
T Consensus 176 ~~K~~p~DF~LW------------------------------------------------------------K~~k---- 191 (462)
T 3tqo_A 176 DSKRDPLDFVLW------------------------------------------------------------KKAK---- 191 (462)
T ss_dssp -CCSSTTCEEEE------------------------------------------------------------EECC----
T ss_pred cccCCcccccee------------------------------------------------------------eecC----
Confidence 000011111111 0000
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHH
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~ 489 (674)
. +-.-| ...||..-|-|+++|.
T Consensus 192 ----------------------~-------------------~ep~W----~spwG~GrPGWHiEcs------------- 213 (462)
T 3tqo_A 192 ----------------------P-------------------GEPKW----DSPWGEGRPGWHIECS------------- 213 (462)
T ss_dssp ----------------------T-------------------TSCCB----CCTTCSEEECHHHHHH-------------
T ss_pred ----------------------C-------------------CCCcc----cCCCCCCCCCCceehH-------------
Confidence 0 11124 3569999999999861
Q ss_pred HHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCC
Q 005849 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVP 569 (674)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~P 569 (674)
.+....+| -+.|++.+|.|++|+|+.++++.+.+++++ |
T Consensus 214 ----------------------------am~~~~lG------------~~~dih~gG~Dl~FpHheneiaqs~a~~g~-p 252 (462)
T 3tqo_A 214 ----------------------------AMSSSILG------------QPFDIHGGGLDLKFPHHENEIAQSEAGEEK-P 252 (462)
T ss_dssp ----------------------------HHHHHHHC------------SSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-C
T ss_pred ----------------------------HHHHHhcC------------CCeEEEccccccccHHHHhHHHHHHHHcCC-C
Confidence 01111111 156999999999999999999999999988 9
Q ss_pred cceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHH--
Q 005849 570 FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFIL-- 647 (674)
Q Consensus 570 f~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~-- 647 (674)
|.++|+|+.+++.+|+|||||+||+|++.|++++||+|++|||+++++++++++|+.+.++++++.+++|||+++++.
T Consensus 253 ~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~~~ 332 (462)
T 3tqo_A 253 FVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLPVV 332 (462)
T ss_dssp CEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred cceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999988888999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred --------------hcCCCCCChhHHHHHHHhHH
Q 005849 648 --------------QNLPSQNDISRWEILLAYKV 667 (674)
Q Consensus 648 --------------~~~~~~~~~~~~~~L~~~~~ 667 (674)
..-+|||.+..+..|...-+
T Consensus 333 ~~~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~ 366 (462)
T 3tqo_A 333 NHEKTSSYTDRFYEAMDDDFNTPIAFALLFEMVR 366 (462)
T ss_dssp -----CHHHHHHHHHHTBTCCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 12246777666666655443
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=390.41 Aligned_cols=303 Identities=18% Similarity=0.213 Sum_probs=201.9
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC---------CC-CCCCchhHHHHHHHHHHcCCCcc
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP---------GT-DHAGIATQLVVEKMLAAEGIKRV 159 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~---------G~-D~~Gl~~e~~ve~~~~~~g~~~~ 159 (674)
.+++++ +|+|+|.+||||+|+++++|+++||+||+||+|.|++ |+ |+||.+| ++.++++|+++.
T Consensus 43 v~~Yvc--gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI----~~~A~~~g~~~~ 116 (501)
T 3sp1_A 43 VKVYAC--GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKV----AKTAREKGLTVY 116 (501)
T ss_dssp EEEEEC--CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-----------------------CCHH
T ss_pred ceEEeC--CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHH----HHHHHHcCCCHH
Confidence 345554 4677799999999999999999999999999999995 44 6778774 445566787764
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCccc
Q 005849 160 ELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAV 239 (674)
Q Consensus 160 ~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~l 239 (674)
++++++.+.|++++++|||..||.. +.+++|...++++|++|+++|+||++...|+||+.+-
T Consensus 117 ------------e~a~~~~~~f~~d~~~Lgi~~d~~~---~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f--- 178 (501)
T 3sp1_A 117 ------------EISEFFTEAFFNDCRKLNIVYPDKV---LVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCF--- 178 (501)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTCCCCSEE---EEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGC---
T ss_pred ------------HHHHHHHHHHHHHHHHcCCCCCCcc---cCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCcc---
Confidence 6788999999999999999999743 5678999999999999999999999999999998641
Q ss_pred ccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeeccccc
Q 005849 240 SDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVD 319 (674)
Q Consensus 240 sd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~ 319 (674)
+.|.+|.|+.+...+.
T Consensus 179 --------------------------------------------------~~yG~ls~~~~~~~~~-------------- 194 (501)
T 3sp1_A 179 --------------------------------------------------KSYGEMAGIDLIDKDM-------------- 194 (501)
T ss_dssp --------------------------------------------------TTTTTTTC----------------------
T ss_pred --------------------------------------------------CCccccCCCChhhhhc--------------
Confidence 0122222111100000
Q ss_pred ccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccc
Q 005849 320 KEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (674)
Q Consensus 320 ~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (674)
.|..+ + ... .+
T Consensus 195 --~g~r~--------------------~---------------------------------~~~----~K---------- 205 (501)
T 3sp1_A 195 --TLPRV--------------------D---------------------------------VDK----FK---------- 205 (501)
T ss_dssp --------------------------------------------------------------------CC----------
T ss_pred --cCCcc--------------------C---------------------------------ccc----cc----------
Confidence 00000 0 000 00
Q ss_pred ccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCccc
Q 005849 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (674)
Q Consensus 400 ~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~ 479 (674)
..|.-+. -|.|...+. ....-| ...||...|-|+++|.
T Consensus 206 ----~~p~Df~-------------------------lWk~~p~~~------~~~~~W----~spwG~GrPGWhiEcs--- 243 (501)
T 3sp1_A 206 ----RNKTDFV-------------------------LWFTNSKFK------DQEMKW----DSPWGFGYPSWHLECA--- 243 (501)
T ss_dssp ----SSTTCEE-------------------------EEEECCC-----------CCB----CCTTCSEEECHHHHHH---
T ss_pred ----CCchhhH-------------------------hcCCCCCCC------CCCcee----cCCCCCCCCCchHHHH---
Confidence 0000000 011100000 000113 3469999998888650
Q ss_pred EEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcC--CcceeEEeehhhhhHHHHH
Q 005849 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY--PTTMLETGHDILFFWVARM 557 (674)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~--P~d~~~~G~Dii~~w~~~~ 557 (674)
....+++ +.|++.+|+|++|+|..+.
T Consensus 244 ----------------------------------------------------am~~~~lg~~~DIH~gG~DLifpHhene 271 (501)
T 3sp1_A 244 ----------------------------------------------------AMNLEYFKDALDIHLGGVDHIGVHHINE 271 (501)
T ss_dssp ----------------------------------------------------HHHHHHTTTCCCEEEEEGGGTTTHHHHH
T ss_pred ----------------------------------------------------HHHHHHcCCCceEEeeccccccchHHHH
Confidence 1122333 4599999999999999999
Q ss_pred HHHhhhhcCCCCcceeEee-eeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcCCCCCccccCHHHHHHHHHH
Q 005849 558 VMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAF 635 (674)
Q Consensus 558 ~~~~~~~~~~~Pf~~v~~h-g~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~ 635 (674)
++++.++.++ ||.++|+| |++. .+|+|||||+||+|+|.|++++ ||+|++||||++.+++++++|+.+.++++++.
T Consensus 272 iAqs~a~~g~-~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l~fs~~~l~~a~~~ 349 (501)
T 3sp1_A 272 IAIAECFLNK-KWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIA 349 (501)
T ss_dssp HHHHHHHHTS-CCCSEEEEECCEE-CC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCEECCHHHHHHHHHH
T ss_pred HHHHHHccCC-CCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCCccCHHHHHHHHHh
Confidence 9999998886 88999999 6776 7999999999999999999999 99999999999998899999999999999999
Q ss_pred ----HHHHHHHHHH
Q 005849 636 ----TNKLWNAGKF 645 (674)
Q Consensus 636 ----~~kl~n~~~f 645 (674)
+++|+|+++.
T Consensus 350 ~~~ll~rl~~~~~~ 363 (501)
T 3sp1_A 350 RENLINKLSYFYES 363 (501)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 9999999875
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=363.24 Aligned_cols=106 Identities=25% Similarity=0.289 Sum_probs=86.2
Q ss_pred CcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEee-eeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcC
Q 005849 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLG 616 (674)
Q Consensus 539 P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~h-g~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~ 616 (674)
|.|++++|+|++++|....++++.++.+..||.++++| |++. .+|+|||||+||+|+|.|++++ ||+|++||||++.
T Consensus 244 ~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~ 322 (414)
T 3c8z_A 244 GLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSG 322 (414)
T ss_dssp CEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHHTTCCHHHHHHHHHTS
T ss_pred CceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhhccCCcchheeEEEec
Confidence 89999999999999999999998888887788999999 6776 6999999999999999999999 9999999999997
Q ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHH
Q 005849 617 TAGQDLSLSIERLTANKAFTNKLWNAGKF 645 (674)
Q Consensus 617 ~~~~d~~fs~~~l~~~~~~~~kl~n~~~f 645 (674)
++++|++|+++.+.++.+.+++|+|++++
T Consensus 323 ~~~~d~~fs~~~l~~~~~~l~~l~n~~~~ 351 (414)
T 3c8z_A 323 HYREDRFWSNEVLDEANARLARWRSATAL 351 (414)
T ss_dssp CTTSCBCCCHHHHHHHHHHHHHHHHHHTS
T ss_pred CcCCCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999754
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-39 Score=354.56 Aligned_cols=299 Identities=18% Similarity=0.193 Sum_probs=217.8
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
.+++++ .|+|+|++||||+|+++++|+++||+|++||+|.++.|+|++|.+ +.+.+++.|.++.
T Consensus 23 v~~yv~--gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~k----i~~~A~~~g~~~~---------- 86 (461)
T 1li5_A 23 VGMYVC--GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDK----IIKRANENGESFV---------- 86 (461)
T ss_dssp EEEEEC--CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHH----HHHHHHHTTCCHH----------
T ss_pred eeEEEc--CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHH----HHHHHHHcCCCHH----------
Confidence 345555 467779999999999999999999999999999999999999966 4455677888765
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc-CCCCccccCChhHHHHHHHHHHHHHHcCceEEc-ccceeccCCCCcccccchhhcc
Q 005849 170 VWEWKEKYGGTITSQIKRLGASC-DWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNLQTAVSDLEVEYS 247 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~-~~~v~w~p~~~t~lsd~Ev~~~ 247 (674)
++++++.+.+++++++|||.+ |+.. .|+ +|...+++++++|.++|++|++ ...|+||..+- -.|+
T Consensus 87 --~~~~~~~~~f~~~~~~LgI~~~d~~~--r~t--~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~-------~~yg 153 (461)
T 1li5_A 87 --AMVDRMIAEMHKDFDALNILRPDMEP--RAT--HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD-------PTYG 153 (461)
T ss_dssp --HHHHHHHHHHHHHHHHTTCCCCSBCC--BGG--GCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC-------TTTT
T ss_pred --HHHHHHHHHHHHHHHHcCCCCCcccc--ccc--chHHHHHHHHHHHHHCCCEEEecCCCEEEecccc-------cccc
Confidence 667889999999999999998 5321 132 4889999999999999999999 89999986531 0011
Q ss_pred CCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcce
Q 005849 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (674)
Q Consensus 248 ~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v 327 (674)
++.|+.+ .++..|+.+
T Consensus 154 ----------------------------------------------~lsg~~~-----------------~~l~~g~rv- 169 (461)
T 1li5_A 154 ----------------------------------------------VLSRQDL-----------------DQLQAGARV- 169 (461)
T ss_dssp ----------------------------------------------TTTTC-----------------------------
T ss_pred ----------------------------------------------cccCCCH-----------------HHhhcCCcc-
Confidence 1111000 000000000
Q ss_pred eeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcc
Q 005849 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (674)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i 407 (674)
.... ..+.|.
T Consensus 170 -------------------------------------------------------------~~~~---------~k~~p~ 179 (461)
T 1li5_A 170 -------------------------------------------------------------DVVD---------DKRNPM 179 (461)
T ss_dssp ---------------------------------------------------------------------------CCSTT
T ss_pred -------------------------------------------------------------cchh---------cccCcc
Confidence 0000 000010
Q ss_pred cceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChh
Q 005849 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (674)
Q Consensus 408 ~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~ 487 (674)
.+.+ |.+ .++-.+++...||.+.|.|+.++.
T Consensus 180 Df~l-------------------------wk~-------------~~~g~~~w~s~WG~g~PgWhiecs----------- 210 (461)
T 1li5_A 180 DFVL-------------------------WKM-------------SKEGEPSWPSPWGAGRPGWHIECS----------- 210 (461)
T ss_dssp CEEE-------------------------EEE-------------CCTTSCCBCCTTCSEEECSSHHHH-----------
T ss_pred ceEE-------------------------Ecc-------------CCCCCCcccCCCCCcCCCccchhH-----------
Confidence 0000 000 000112345679999998887540
Q ss_pred HHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcC--CcceeEEeehhhhhHHHHHHHHhhhhc
Q 005849 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY--PTTMLETGHDILFFWVARMVMMGIEFT 565 (674)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~--P~d~~~~G~Dii~~w~~~~~~~~~~~~ 565 (674)
....+++ |.|++++|+|++|+|....++++.++.
T Consensus 211 --------------------------------------------am~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a~~ 246 (461)
T 1li5_A 211 --------------------------------------------AMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAH 246 (461)
T ss_dssp --------------------------------------------HHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHHS
T ss_pred --------------------------------------------HHHHHHhCCCceEEeccCccCchHHHHHHHHHHHhc
Confidence 0111222 679999999999999999999888877
Q ss_pred CCCCcceeEee-eeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHH
Q 005849 566 GSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGK 644 (674)
Q Consensus 566 ~~~Pf~~v~~h-g~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~ 644 (674)
|. ||.++|+| |++. .+|+|||||+||+|+|.|++++||+|++|||+++.+++++++||++.+.++.+.+++++|+++
T Consensus 247 g~-~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~~l~rl~n~~~ 324 (461)
T 1li5_A 247 DG-QYVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALR 324 (461)
T ss_dssp SS-CCEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHHHHHHHHHHHT
T ss_pred CC-CCCcEEEEeeEEE-ECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 76 77888887 7887 589999999999999999999999999999999987799999999999999999999999987
Q ss_pred HH
Q 005849 645 FI 646 (674)
Q Consensus 645 f~ 646 (674)
++
T Consensus 325 ~~ 326 (461)
T 1li5_A 325 GT 326 (461)
T ss_dssp TC
T ss_pred Hh
Confidence 54
|
| >1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=277.32 Aligned_cols=140 Identities=45% Similarity=0.790 Sum_probs=133.0
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
.++++|++|++ +.+.+++|||||||||+||+||+|||++++|++|+|+++.||++ ++++||+.++||++++|||+||+
T Consensus 3 ~~~~~~v~F~~-~~~~~l~i~TTrP~Tl~g~~aiav~P~~~~~~~l~g~~~~~P~~-~~~ipI~~~~~V~~~~GTG~V~~ 80 (147)
T 1wka_A 3 PGKLYTLRYEV-EGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLT-EVWIPILADPAVEKDFGTGALKV 80 (147)
T ss_dssp -CEEEEEEEEB-TTSCEEEEEESCGGGGGGCCEEEECTTCTTTGGGTTCEEECTTS-SCEEEEEECTTCCTTSTTSEEEE
T ss_pred cceEEEEEEEC-CCCcEEEEEECCceecccceEEEECCCCchHHHhcCCEEECCCC-CCeeEEEEeCccccCCCCCcEEE
Confidence 57899999999 66789999999999999999999999999999999999999995 79999999999999999999999
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccc----cCCCCHHHHHHHHHHHHHHcCCccccccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGL----FRGLDRFEARKKLWSDLEETGLAVKKEPH 393 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~----~~g~~~~~ar~~i~~~L~~~g~~~~~~~~ 393 (674)
||+||++||++++++|||+++++|++|++ ++|. |+|++++|||+.|+++|+++|++.+.+++
T Consensus 81 ~Pah~~~D~~~~~~~~L~~~~~id~~G~~--~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 81 TPAHDPLDYEIGERHGLKPVSVINLEGRM--EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp CTTTCHHHHHHHHHHTCCCCCSBCTTSBB--CSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCHHHHHHHHHcCCCcceEECCCCEE--cCCCcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 99999999999999999999999999999 6776 99999999999999999999999887654
|
| >1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=273.54 Aligned_cols=145 Identities=31% Similarity=0.448 Sum_probs=131.3
Q ss_pred CCeeEEEEEeecCC------CceEEEeecCCCcccCCceEEeCCC---------Cchh----------------------
Q 005849 250 PGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVALAVNPQ---------DEHY---------------------- 292 (674)
Q Consensus 250 ~~~~~~~kf~~~~~------~~~l~v~Tt~Petl~~~~av~v~p~---------~~~y---------------------- 292 (674)
.++++||+|++.+. +.+++|||||||||+||+||+|||+ +++|
T Consensus 2 ~S~~i~V~F~~~~~~~~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 81 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFP 81 (186)
T ss_dssp -CCEEEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCTTSCEEEEEE
T ss_pred ccceEEEEEEeCCCccccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhcCcEEEEEEE
Confidence 46789999999874 6899999999999999999999999 4555
Q ss_pred -hhccCcEEecCCCC--CceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCC
Q 005849 293 -SQFIGMMAIVPMTY--GRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLD 369 (674)
Q Consensus 293 -~~l~G~~~~~P~~~--~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~ 369 (674)
.+|+|..+.||+.. ++.+||+.++||++++|||+||+||+||++||+++++||||+++++|++|.++++ | |.|+.
T Consensus 82 G~~l~g~~~~~P~~~~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~G~~~~~-~-~~Gl~ 159 (186)
T 1wny_A 82 GKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLY 159 (186)
T ss_dssp HHHHTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTTSBBCST-T-CTTCB
T ss_pred cccccCcEEECCccccCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCCccCccC-C-CCCcC
Confidence 45899999999953 7999999999999999999999999999999999999999999999999999987 7 99999
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccc
Q 005849 370 RFEARKKLWSDLEETGLAVKKEPHTLR 396 (674)
Q Consensus 370 ~~~ar~~i~~~L~~~g~~~~~~~~~~~ 396 (674)
++||++.|++.|+++|.+++.+++.|+
T Consensus 160 v~~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 160 FREANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEC----
T ss_pred HHHHHHHHHHHHHHCCCeecceeEEcC
Confidence 999999999999999999999998874
|
| >2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-30 Score=252.36 Aligned_cols=139 Identities=34% Similarity=0.521 Sum_probs=123.6
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCch-------------hh--------------------hcc
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEH-------------YS--------------------QFI 296 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~-------------y~--------------------~l~ 296 (674)
-++.++|+|++.+.+.+|+|||||||||+|+++|+|||++++ |. .|+
T Consensus 9 ~~~g~~v~F~~~~~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~l~ 88 (196)
T 2ajg_A 9 MGEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDT 88 (196)
T ss_dssp --CEEEEEEEBTTCSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTTCHHHHHHHHHHHHCCCCGGGGGGSCCCEEEE
T ss_pred cCceEEEEEEeCCCCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCCHHHHHHHHHHhhcccccceEEEeeeeCCEEc
Confidence 367899999998878899999999999999999999999862 11 167
Q ss_pred CcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeecc---------CCCccccc-----c
Q 005849 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMN---------KDGTLNEV-----A 362 (674)
Q Consensus 297 G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~---------~~G~~~e~-----~ 362 (674)
|.++.||++ ++.+||+.++||++++|||+||+||+||++||++++++|||++++++ ++|.+++. +
T Consensus 89 G~~~~~P~~-~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns 167 (196)
T 2ajg_A 89 GFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNS 167 (196)
T ss_dssp EEEEECTTT-CCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSS
T ss_pred CCEEECCCC-CCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCceEecC
Confidence 999999995 79999999999999999999999999999999999999999999996 35666553 4
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCccc
Q 005849 363 GLFRGLDRFEARKKLWSDLEETGLAVK 389 (674)
Q Consensus 363 g~~~g~~~~~ar~~i~~~L~~~g~~~~ 389 (674)
|.|+|+.++||++.|++.|+++|++.+
T Consensus 168 ~~~~Gl~v~eA~~~Ii~~L~~~g~~~~ 194 (196)
T 2ajg_A 168 GEFNGLDHEAAFNAIADKLTAMGVGER 194 (196)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHTTSEEE
T ss_pred cccCCeEHHHHHHHHHHHHHHCCCcee
Confidence 789999999999999999999998765
|
| >3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=246.42 Aligned_cols=140 Identities=32% Similarity=0.540 Sum_probs=120.0
Q ss_pred eEEEEEeecCCC---------------------ceEEEeecCCCcccCCceEEeCCCCchhh------------------
Q 005849 253 LYYIKYRVAGRS---------------------DFLTIATTRPETLFGDVALAVNPQDEHYS------------------ 293 (674)
Q Consensus 253 ~~~~kf~~~~~~---------------------~~l~v~Tt~Petl~~~~av~v~p~~~~y~------------------ 293 (674)
-..|+|++.+.+ .+++|||||||||+||++|+|||++++..
T Consensus 5 G~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~~~~~ 84 (219)
T 3o0a_A 5 GALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVE 84 (219)
T ss_dssp CEEEEEEEECSCGGGTGGGSCHHHHHHHHHHSEEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCHHHHH
T ss_pred EEEEEEEecCCccccccccccchhhhhcccCCCCEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhHHHHH
Confidence 356788887644 68999999999999999999999986310
Q ss_pred ----------------------hccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeee
Q 005849 294 ----------------------QFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNV 351 (674)
Q Consensus 294 ----------------------~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~ 351 (674)
.|.|.++.||++ ++.+||+.++||++++|||+||+||+||++||+++++||||++++
T Consensus 85 ~~i~~~~~~~~~~~~~~~~~~G~l~G~~~~~Pl~-~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~Lpi~~v 163 (219)
T 3o0a_A 85 NFVEKMKKMSTRERTMEEDKEGVFLGVYATNPAN-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVV 163 (219)
T ss_dssp HHHHHHHTCCHHHHHSCSSCCEEEEEEEEECTTT-CCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHhhccccceeEEEeeeEEcCCEEECCCC-CCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCCCceee
Confidence 145788999995 899999999999999999999999999999999999999999999
Q ss_pred ccC-------CCcccc-----cccccCCCCHHHHHHHHHHHHHHcCCccccccc
Q 005849 352 MNK-------DGTLNE-----VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPH 393 (674)
Q Consensus 352 ~~~-------~G~~~e-----~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~ 393 (674)
+|. +|.+++ +++.|.|+.++||++.|++.|+++|++.+..+|
T Consensus 164 i~~~~~~~~~~g~ft~~g~~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~l~~~~~y 217 (219)
T 3o0a_A 164 VKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKKVSY 217 (219)
T ss_dssp EECSSCCCTTTCCCCSCCEECSCGGGTTCBHHHHHHHHHHHHHHTTSEEEC---
T ss_pred eCCccccccccccccccceEecCCCCCCCCHHHHHHHHHHHHHHCCCeeeeeee
Confidence 986 344443 468999999999999999999999999887655
|
| >2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-27 Score=244.91 Aligned_cols=135 Identities=25% Similarity=0.405 Sum_probs=115.6
Q ss_pred CCceEEEeecCCCcccCCceEEeCCCCc----------------h------------------------hhhccCcEEec
Q 005849 263 RSDFLTIATTRPETLFGDVALAVNPQDE----------------H------------------------YSQFIGMMAIV 302 (674)
Q Consensus 263 ~~~~l~v~Tt~Petl~~~~av~v~p~~~----------------~------------------------y~~l~G~~~~~ 302 (674)
.+.+|+|||||||||+|+++|+|||+.+ + +.+|+|..+.|
T Consensus 31 ~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~ 110 (261)
T 2wfg_A 31 NKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDA 110 (261)
T ss_dssp SEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTCEEEC
T ss_pred CCCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCCEEEC
Confidence 3578999999999999999999999943 1 22489999999
Q ss_pred CCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHH-------hC-------CCeeeeccC--CCcccc------
Q 005849 303 PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK-------LG-------LPILNVMNK--DGTLNE------ 360 (674)
Q Consensus 303 P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~-------~~-------l~~~~~~~~--~G~~~e------ 360 (674)
|++.++.+||++++||++++|||+||+||+||++||+++++ || ||++++++. +|.+.+
T Consensus 111 Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~~ 190 (261)
T 2wfg_A 111 PYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVND 190 (261)
T ss_dssp TTCSSCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHHH
T ss_pred CCCCCceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhhcc
Confidence 99756899999999999999999999999999999999999 99 899999987 444321
Q ss_pred -----------------------------cccccCCCCHHHHHHHHHHHHHHcCCccccccccccc
Q 005849 361 -----------------------------VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRV 397 (674)
Q Consensus 361 -----------------------------~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~ 397 (674)
++|.|.|+.++||++.|++.|+++|.+.+...+.|+-
T Consensus 191 ~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~~h~~ 256 (261)
T 2wfg_A 191 LKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEH 256 (261)
T ss_dssp TTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHHHHHHTTSEEEECC-----
T ss_pred ccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHHHHHHHHCCCeeeeeeeeecc
Confidence 1688999999999999999999999999988887753
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=254.08 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=109.7
Q ss_pred HHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHH
Q 005849 71 IYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150 (674)
Q Consensus 71 ~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~ 150 (674)
+.+.=+++..|+.... ++++++|...+|||||+|||||+|+.+++|+++|++++.||+|+...-..+.|..+...+.-.
T Consensus 12 l~~i~~~~~~yG~~~~-~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~ 90 (464)
T 3fnr_A 12 ANQALTNPNDFTKGEK-KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSI 90 (464)
T ss_dssp HHHHHHSGGGTTCCCC-CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHhHHhcCCCCC-CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHH
Confidence 3333345566887655 678899999999999999999999999999999999999999999999999997764433211
Q ss_pred ----HH-HcCCC---ccc---------cCHHHH------------HHHHHHHH-HHHHHHHHHHHHHhccccC-CCCccc
Q 005849 151 ----LA-AEGIK---RVE---------LSRDEF------------TKRVWEWK-EKYGGTITSQIKRLGASCD-WTRERF 199 (674)
Q Consensus 151 ----~~-~~g~~---~~~---------l~~e~f------------~~~~~~~~-~~~~~~~~~~l~~lgi~~D-w~~~~~ 199 (674)
.. ..|.+ |++ ++++-+ .+.+|+++ +...+.+++++++|||.+| |..|-.
T Consensus 91 ~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess 170 (464)
T 3fnr_A 91 LLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERS 170 (464)
T ss_dssp HHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGG
T ss_pred HHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHH
Confidence 11 12322 221 111111 22466664 4456779999999999999 544422
Q ss_pred cCChhHHHHHHHHHHHHHHcCceEEcccce
Q 005849 200 TLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 200 T~~~~~~~~v~~~f~~L~~kGliy~~~~~v 229 (674)
. |. .+..++++|.++|++|+....+
T Consensus 171 ~----~~-~~~~vv~~L~~~g~~~e~dGa~ 195 (464)
T 3fnr_A 171 Y----YD-ALNATLESLKEHKGIYEQEGKI 195 (464)
T ss_dssp G----ST-THHHHHHHHHHTTCEEEETTEE
T ss_pred H----HH-HHHHHHHHHHHCCCEEEeCCeE
Confidence 2 22 7899999999999999976654
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-27 Score=270.40 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=93.5
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC--chhHHHHHHHHHHc--CCCccccCHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--IATQLVVEKMLAAE--GIKRVELSRDE 165 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~G--l~~e~~ve~~~~~~--g~~~~~l~~e~ 165 (674)
+.|++.++ |+|||.|||||+|+++++|+++||++++|++|.++.++|++| -.+... ...+.++ |+++.++.+.
T Consensus 20 ~~yv~~tg-PsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~-~~~a~~~~~G~~~~~~p~p- 96 (523)
T 1irx_A 20 EKYVVESG-ITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRN-VPQEWKDYLGMPISEVPDP- 96 (523)
T ss_dssp SEEEEEEE-ECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSS-SCGGGGGGTTSBGGGSCCT-
T ss_pred CeEEECCC-CCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhH-HHHHHHHHcCCCcccCCcc-
Confidence 34666555 999999999999999999999999999999999999999999 222000 0011223 6665433321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHH-HHHHHHHHHHHcC-ceEE
Q 005849 166 FTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSR-AVVEAFIRLHEKG-LIYQ 224 (674)
Q Consensus 166 f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~-~v~~~f~~L~~kG-liy~ 224 (674)
| ..|+++++++.+.|+++|++|||.+|+ |.+++. |.. .+++++.+|.++| .||.
T Consensus 97 ~-~~~~~~~~~~~~~~~~~l~~Lgi~~D~---~~~se~-~~~g~~~~~i~~L~~~G~~iy~ 152 (523)
T 1irx_A 97 W-GCHESYAEHFMRKFEEEVEKLGIEVDL---LYASEL-YKRGEYSEEIRLAFEKRDKIME 152 (523)
T ss_dssp T-SSSSSHHHHHHHHHHHHHHTTTCCCEE---EEHHHH-HHTTTTHHHHHHHHHTHHHHHH
T ss_pred h-hhHHHHHHHHHHHHHHHHHHcCCCceE---Eechhh-ccchHHHHHHHHHHHchHHHHH
Confidence 1 135578899999999999999998773 223222 666 8899999999999 6663
|
| >2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=230.11 Aligned_cols=126 Identities=25% Similarity=0.396 Sum_probs=107.9
Q ss_pred CCceEEEeecCCCcccCCceEEeCCCCch----------------------hhh------------------ccCcEEec
Q 005849 263 RSDFLTIATTRPETLFGDVALAVNPQDEH----------------------YSQ------------------FIGMMAIV 302 (674)
Q Consensus 263 ~~~~l~v~Tt~Petl~~~~av~v~p~~~~----------------------y~~------------------l~G~~~~~ 302 (674)
.+.+|+|||||||||+|+++|+|||++++ |.+ |+|.++.|
T Consensus 28 ~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~ 107 (252)
T 2wfd_A 28 KNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSA 107 (252)
T ss_dssp SCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSSSSTTCCCEEEECCHHHHTTCEEEC
T ss_pred CCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhhccCcccEEEEEEEcccccCCEEEc
Confidence 46899999999999999999999999731 222 88999999
Q ss_pred CCCCCceeeeeecccccccCCCcceeeCCCCChhhHHH----------HHHhCCC--------eeeeccC----------
Q 005849 303 PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK---------- 354 (674)
Q Consensus 303 P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~----------~~~~~l~--------~~~~~~~---------- 354 (674)
|++..+.+||++++||++++|||+||+||+||++||++ +++|||| ++.+++.
T Consensus 108 Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~~~~~~~~~vI~~~~~g~~~~~~ 187 (252)
T 2wfd_A 108 PLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVT 187 (252)
T ss_dssp SSCSSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGGTTTCCCCCCEEBTTTBSSHHHH
T ss_pred CCCCCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchhccccCceeEEecCcccccchhh
Confidence 99633689999999999999999999999999999994 7889988 4555432
Q ss_pred -----------------------------CCcccccccccCCCCHHHHHHHHHHHHHHcCCcccc
Q 005849 355 -----------------------------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKK 390 (674)
Q Consensus 355 -----------------------------~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~ 390 (674)
+|.|+ +|.|+|+.+++|++.|+++|+++|.+.+.
T Consensus 188 ~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~~~~~Gl~v~eA~~~Ii~~L~~~g~~~~~ 250 (252)
T 2wfd_A 188 ICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--VDGFKGQKVQDVKKTIQKKMIDAGDALIY 250 (252)
T ss_dssp HHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--STTSTTCBHHHHHHHHHHHHHHTTSEEEE
T ss_pred hhhhccccCcchhhhhhhhhhhhccccccCceEe--eeccCCeEHHHHHHHHHHHHHHCCCCccc
Confidence 36665 68899999999999999999999987653
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-25 Score=255.04 Aligned_cols=146 Identities=21% Similarity=0.117 Sum_probs=105.7
Q ss_pred HhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHH------
Q 005849 76 ESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEK------ 149 (674)
Q Consensus 76 ~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~------ 149 (674)
++...|+......+++.+|....|||||++||||+|+.+++|+++|++++.||+|.+....+++|..+...+.-
T Consensus 105 ~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~ 184 (629)
T 2zue_A 105 AKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKE 184 (629)
T ss_dssp HHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHH
T ss_pred hcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCC
Confidence 44567887654556789999999999999999999999999999999999999999999999998764322210
Q ss_pred -----------------------------HHHHcCCCc--cccCHHHHHH-----HH-HHHHHHHHHHHHHHHHHhcccc
Q 005849 150 -----------------------------MLAAEGIKR--VELSRDEFTK-----RV-WEWKEKYGGTITSQIKRLGASC 192 (674)
Q Consensus 150 -----------------------------~~~~~g~~~--~~l~~e~f~~-----~~-~~~~~~~~~~~~~~l~~lgi~~ 192 (674)
.+++.+.++ .+.+++.+.+ .. +++++.+.+.+++++++|||.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~ 264 (629)
T 2zue_A 185 EFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKY 264 (629)
T ss_dssp HHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cchhhhhhhcccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 000001111 0001111110 01 4567888889999999999999
Q ss_pred C-CCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 193 D-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 193 D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
| |.+ +.+..+...++.++++|.++|++|+
T Consensus 265 D~~~~---es~~~~~~~v~~vi~~L~~kG~~y~ 294 (629)
T 2zue_A 265 DLLVW---ESDIVRRKLFEIALELLSKNENFYI 294 (629)
T ss_dssp SEEEE---HHHHHHTTHHHHHHHHHHTSTTEEC
T ss_pred ccccC---cCccccchhHHHHHHHHHHCCCccc
Confidence 8 433 4444447889999999999999993
|
| >3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-25 Score=226.63 Aligned_cols=156 Identities=18% Similarity=0.281 Sum_probs=126.7
Q ss_pred cCCCCcccccchh--hccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCch------------------
Q 005849 232 SPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEH------------------ 291 (674)
Q Consensus 232 ~p~~~t~lsd~Ev--~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~------------------ 291 (674)
..+++|+||+-|- .|+++.++++ .+.+.+.+.+++|||||||||+||+||||||+.++
T Consensus 47 ~~~~~~~l~~f~~~~~~k~~~~~~~--~~~l~g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~ge~~IvAe~l~ 124 (311)
T 3pz6_A 47 AEKLNIKLPRFYSNPKNKAIFDQLW--ENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAA 124 (311)
T ss_dssp CCTTSCCCCCCCCCHHHHHHHHHHH--TTTCCSCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEETTEEEEEEHHHH
T ss_pred HHHhCCCccccccCCCcccccchhe--eeecCCCCEEEEEEECCchhhhhheEEEECCCCcEEEEEECCCCEEEEeHHHH
Confidence 4577889998766 4666666666 45677788999999999999999999999999421
Q ss_pred ----h--------------------hhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHH----
Q 005849 292 ----Y--------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK---- 343 (674)
Q Consensus 292 ----y--------------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~---- 343 (674)
| ++|+|..+.||++..+.+||++++||++++|||+||+||+||++||+++++
T Consensus 125 e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~hPl~~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~ 204 (311)
T 3pz6_A 125 VNMAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILEN 204 (311)
T ss_dssp HHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEECTTCSSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTT
T ss_pred HHHHHhcccccccCCCcEEEEEEEhHHhcCCEEECCCCCCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhc
Confidence 1 137799999999643489999999999999999999999999999997666
Q ss_pred -------hCC---------CeeeeccC---------------------------------------CCcccccccccCCC
Q 005849 344 -------LGL---------PILNVMNK---------------------------------------DGTLNEVAGLFRGL 368 (674)
Q Consensus 344 -------~~l---------~~~~~~~~---------------------------------------~G~~~e~~g~~~g~ 368 (674)
||| +++.+++. +|.|. +|.|+|+
T Consensus 205 k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~--~g~~~G~ 282 (311)
T 3pz6_A 205 RNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK--MGPFAGQ 282 (311)
T ss_dssp GGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC--SSTTTTS
T ss_pred cHHHHHHcCCchHHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe--eeccCCe
Confidence 664 55555542 23333 6899999
Q ss_pred CHHHHHHHHHHHHHHcCCccccc
Q 005849 369 DRFEARKKLWSDLEETGLAVKKE 391 (674)
Q Consensus 369 ~~~~ar~~i~~~L~~~g~~~~~~ 391 (674)
++.+||++|.++|.++|..+...
T Consensus 283 ~V~eAk~~i~~~L~~~g~a~~yy 305 (311)
T 3pz6_A 283 SVKDCKQSCRDLLVQNNQCIVYS 305 (311)
T ss_dssp BHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EHHHHHHHHHHHHHHCCCceEEc
Confidence 99999999999999999988743
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-24 Score=245.07 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=93.7
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCcc-----------
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRV----------- 159 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~----------- 159 (674)
+.+|....|||||++||||+|+.+++|+++||+|+.||+|.++.-+++.|..+...+. ...+.|.+..
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~-~~~~~g~d~~~~~~~d~~~g~ 182 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLF-ALRHYGLTWDGKEKYDHFAGR 182 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHH-HHHHTTCCCCSSSCHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHH-HHHHhCCcccCCCCcchhHHH
Confidence 6899999999999999999999999999999999999999998766666644321111 0111222100
Q ss_pred ------------cc---CHHHHHHH----HHHHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHc
Q 005849 160 ------------EL---SRDEFTKR----VWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEK 219 (674)
Q Consensus 160 ------------~l---~~e~f~~~----~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~k 219 (674)
++ +++-+.+. +.++++.+.+.+++++++|||.+| |.+ |.+..+...+++++++|.++
T Consensus 183 ~y~~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D~~~~---es~~~~~~~v~~~~~~L~~k 259 (592)
T 1iq0_A 183 AYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVW---ESDIVRAGLLQKALALLEQS 259 (592)
T ss_dssp HHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEE---HHHHHHTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeEEecc---CCcccccchHHHHHHHHHHC
Confidence 00 00000000 156788889999999999999998 533 44444578899999999999
Q ss_pred CceEE
Q 005849 220 GLIYQ 224 (674)
Q Consensus 220 Gliy~ 224 (674)
|++|+
T Consensus 260 G~~y~ 264 (592)
T 1iq0_A 260 PHVFR 264 (592)
T ss_dssp TTEEC
T ss_pred CCccc
Confidence 99995
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-19 Score=202.11 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=107.5
Q ss_pred HhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcC
Q 005849 76 ESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEG 155 (674)
Q Consensus 76 ~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g 155 (674)
+....|+......+++++|....|||+|++||||+|+.+++|+++|+++..||+|.+.....++|..+...+.- ..+.|
T Consensus 129 ~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~-~~~~g 207 (607)
T 1f7u_A 129 TRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVG-FERYG 207 (607)
T ss_dssp HHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-HHHHC
T ss_pred hhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHH-HHHhC
Confidence 45567887654456789999999999999999999999999999999999999999999999988765332211 01111
Q ss_pred C----------------------------------CccccCH----------HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005849 156 I----------------------------------KRVELSR----------DEFTKRVWEWKEKYGGTITSQIKRLGAS 191 (674)
Q Consensus 156 ~----------------------------------~~~~l~~----------e~f~~~~~~~~~~~~~~~~~~l~~lgi~ 191 (674)
. ...+.++ ++..+..+++++...+.+++++++|||.
T Consensus 208 ~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~ 287 (607)
T 1f7u_A 208 NEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIK 287 (607)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred chhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 0 0001111 1222223355777888899999999999
Q ss_pred cC-CCCccccCChhHH-HHHHHHHHHHHHcCceEEcccce
Q 005849 192 CD-WTRERFTLDEQLS-RAVVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 192 ~D-w~~~~~T~~~~~~-~~v~~~f~~L~~kGliy~~~~~v 229 (674)
+| |.++- .|. ..+..++++|.++|++|+....+
T Consensus 288 fD~~~~ES-----~~~~~~~~~vi~~L~~kG~~ye~dGa~ 322 (607)
T 1f7u_A 288 YDVYSGES-----QVSKESMLKAIDLFKEKGLTHEDKGAV 322 (607)
T ss_dssp CSEEEEGG-----GCCHHHHHHHHHHHHHTTCEEEETTEE
T ss_pred ceeecCcc-----hhhhhHHHHHHHHHHhCCCEEEECCcE
Confidence 98 54431 233 57899999999999999977655
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-13 Score=147.04 Aligned_cols=94 Identities=23% Similarity=0.287 Sum_probs=70.6
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.||||||++.++...+|| +|.+.++.-+|+.--+ ++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~---------------R~------------- 143 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR---------------RV------------- 143 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG---------------GC-------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---------------cc-------------
Confidence 55667799999999999999998666665 5666666666654311 00
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
..++.+.|.++|+.||+..| .. +...+|.....+...+|.++|++|.
T Consensus 144 -~~e~~~~I~edL~wLGl~wd--~~--~~qSdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 144 -DPEAYDMIPADLEWLGVEWD--ET--VIQSDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp -CTTHHHHHHHHHHHHTCCCS--EE--EEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred -cHHHHHHHHHHHHHcCCCCC--CC--cccccCHHHHHHHHHHHHHcCCcee
Confidence 13577789999999997554 33 4455688889999999999999997
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-10 Score=128.77 Aligned_cols=100 Identities=24% Similarity=0.235 Sum_probs=72.7
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
-.++++-.+|+|||+|||||+|+.++.|.+||. ..|.-|+.+--+|.. +
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~~------------------r----------- 59 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDLE------------------R----------- 59 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSCC------------------S-----------
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCcc------------------c-----------
Confidence 357778888999999999999999999999997 678777665433311 0
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCC-------CccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWT-------RERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~-------~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
....+.+.|.++|+.||+..|=. -+|. ..++....+++.++|.++|.+|..
T Consensus 60 ---~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y~--QS~r~~~y~~~a~~L~~~G~aY~c 117 (481)
T 2o5r_A 60 ---SEREYEEKLMESLRWLGLLWDEGPDVGGDHGPYR--QSERVEIYREHAERLVKEGKAYYV 117 (481)
T ss_dssp ---GGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB--GGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred ---cHHHHHHHHHHHHHHcCCCCCCCcccCCCCCcee--eeccHHHHHHHHHHHHHCCCeeEe
Confidence 11345667889999999865410 0122 345667788999999999999853
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-11 Score=131.94 Aligned_cols=93 Identities=23% Similarity=0.351 Sum_probs=64.6
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 005849 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (674)
Q Consensus 95 ~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~ 174 (674)
+-.+|.|||.|||||+++.++...+|| ++.+.|+.=+|+.-.+ +. .
T Consensus 4 ~RFAPSPtG~lHiG~artal~n~l~Ar-----~~~G~filRieDtD~~---------------R~--------------~ 49 (492)
T 2cfo_A 4 VRLAPSPTGNLHIGTARTAVFNWLYAR-----HRGGKFILRIEDTDRE---------------RS--------------R 49 (492)
T ss_dssp EEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCSSS---------------SC--------------C
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEeeCCcc---------------cc--------------c
Confidence 445699999999999999999655555 4445554444443210 11 1
Q ss_pred HHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 175 ~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
.++.+.|.++|+.||+ +|+... ..-.++....+++..+|.++|++|.
T Consensus 50 ~~~~~~i~~dL~wLGl--~wde~~-~~QS~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 50 PEYTENILEGLQWLGL--TWDEGP-YFQSDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHHHHHHHHHTTC--CCSEEE-EEGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHcCC--CCCCCC-ccccCCHHHHHHHHHHHHHCCCceE
Confidence 4567789999999997 454421 2234566778899999999999996
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-10 Score=126.54 Aligned_cols=95 Identities=22% Similarity=0.224 Sum_probs=66.8
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.||||||++.++...+|| +|...++.-+|+.--. .
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~-----------------R------------ 72 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV-----------------K------------ 72 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-----------------G------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch-----------------h------------
Confidence 45566699999999999999999888877 3444444444443211 0
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
.+.++.+.|.++|+.||+..|- .. +...+|.....+...+|.++|++|.
T Consensus 73 ~~~e~~~~I~edL~wLGl~wde-~~--~~qSer~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 73 EDIEYVESIKNDVEWLGFHWSG-NV--RYSSDYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSS-SC--EEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHHHHHHcCCCCCC-CC--eehcccHHHHHHHHHHHHHCCCcee
Confidence 1146778899999999986552 22 3344566666777789999999997
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.4e-10 Score=128.38 Aligned_cols=95 Identities=19% Similarity=0.223 Sum_probs=69.1
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.||||||++.++...+|| +|.+.|+.-+|+.--. +.
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---------------R~------------- 113 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE---------------LA------------- 113 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT---------------TC-------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---------------cc-------------
Confidence 45555699999999999999999777776 4455555555543211 11
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
..++.+.|.++|+.||+..| +.. +...+|.....+...+|.++|++|.
T Consensus 114 -~~e~~~~IledL~wLGl~wd-e~~--~~qSer~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 114 -RQEYVDSIADDLKWLGLDWG-EHF--YYASDYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp -CHHHHHHHHHHHHHHTCCCT-TCE--EEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred -cHHHHHHHHHHHHHcCCCCC-CCc--ccHhhhHHHHHHHHHHHHHCCCcEe
Confidence 14677889999999997554 222 3345678889999999999999997
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-09 Score=118.20 Aligned_cols=96 Identities=23% Similarity=0.256 Sum_probs=66.8
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++.-.+|| ...|.-++.+=-+|.. +.
T Consensus 3 ~~RFaPsPtG~LHiG~~rtal~n~l~Ar--~~~G~filRieDtD~~------------------R~-------------- 48 (468)
T 1j09_A 3 VTRIAPSPTGDPHVGTAYIALFNYAWAR--RNGGRFIVRIEDTDRA------------------RY-------------- 48 (468)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHH--HTTCEEEECBCCCCTT------------------SC--------------
T ss_pred eEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCCc------------------cc--------------
Confidence 3445699999999999999999888888 3345433333333221 11
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcc------c-cCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRER------F-TLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~------~-T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+. |+... - +...++....++...+|.++|++|..
T Consensus 49 ~~~~~~~I~~dl~wlGl~--wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c 105 (468)
T 1j09_A 49 VPGAEERILAALKWLGLS--YDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRA 105 (468)
T ss_dssp CTTHHHHHHHHHHHTTCC--CSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEE
T ss_pred ChHHHHHHHHHHHHcCCC--CCCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEEc
Confidence 134667899999999975 54431 0 23445677889999999999999975
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.1e-09 Score=118.01 Aligned_cols=97 Identities=22% Similarity=0.238 Sum_probs=70.9
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
+++.+-++ |+|||+|||||+|+.++.+.+||. ..|.-++.+=-+|.. +
T Consensus 128 ~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD~~------------------r----------- 175 (592)
T 3al0_C 128 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDTE------------------R----------- 175 (592)
T ss_dssp CCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCSS------------------S-----------
T ss_pred CeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEecCcChh------------------h-----------
Confidence 45666666 999999999999999999999995 466555555333310 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCc---------cccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRE---------RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~---------~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+.+| .. |+ -.++....++++.+|.++|++|..
T Consensus 176 ---~~~~~~~~I~~dL~wlGl~~D--~~~~~gG~~gp~~--qSer~~~y~~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 176 ---SSREYEQQILESLRWCGLDWD--EGPDIGGDFGPYR--QSERLEIYREYAEKLVEDKRAYYV 233 (592)
T ss_dssp ---CCHHHHHHHHHHHHHTTCCCS--BBTTTBCTTCCCB--STTCHHHHHHHHHHHHHTTTEEEE
T ss_pred ---ccHHHHHHHHHHHHHcCCCCC--CCCCcCCCCCCee--eeCCHHHHHHHHHHHHHcCCceEe
Confidence 014567789999999998654 42 33 233457889999999999999986
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A | Back alignment and structure |
|---|
Probab=99.01 E-value=8.2e-09 Score=114.43 Aligned_cols=95 Identities=21% Similarity=0.201 Sum_probs=68.4
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.|||||+++.++.-.+|| ...|.-++.+=-+|.. +
T Consensus 7 vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar--~~gG~fiLRieDtD~~------------------R-------------- 52 (498)
T 2ja2_A 7 VRVRFCPSPTGTPHVGLVRTALFNWAYAR--HTGGTFVFRIEDTDAQ------------------R-------------- 52 (498)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH--HHTCEEEECBCCCCTT------------------T--------------
T ss_pred eeEEECcCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCCc------------------c--------------
Confidence 34455699999999999999999999998 4456444443333221 1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCC---------ccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTR---------ERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~---------~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| . .|+ ..++....++...+|.++|++|..
T Consensus 53 ~~~~~~~~I~~~L~wlGl~wD--egp~~gG~~~~~~--QS~r~~~y~~~~~~L~~~g~aY~c 110 (498)
T 2ja2_A 53 DSEESYLALLDALRWLGLDWD--EGPEVGGPYGPYR--QSQRAEIYRDVLARLLAAGEAYHA 110 (498)
T ss_dssp CCHHHHHHHHHHHHHHTCCCS--BBTTTBCTTCCCB--GGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred cChHHHHHHHHHHHHcCCCcC--CCcCcCCCCCCee--eecCHHHHHHHHHHHHHcCCeEEe
Confidence 114567789999999997544 4 233 445667889999999999999975
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-08 Score=111.47 Aligned_cols=95 Identities=23% Similarity=0.250 Sum_probs=67.6
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.|||||+++.++.-.+||- ..|.-++.+=-+|.. +
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~------------------R-------------- 71 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDTE------------------R-------------- 71 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCTT------------------T--------------
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEEeeCCcc------------------c--------------
Confidence 445556999999999999999998888873 455444443333321 1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCc---------cccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRE---------RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~---------~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+. |+.. |+ -.++....++...+|.++|++|..
T Consensus 72 ~~~~~~~~I~~dL~wlGl~--wDe~~~~gG~~gp~~--QSer~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 72 SSREYEQQILESLRWCGLD--WDEGPDIGGDFGPYR--QSERLEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp CCHHHHHHHHHHHHHTTCC--CSBBTTTBCTTCCCB--GGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHcCCC--CCcCCCCCCCCCCee--eeCCHHHHHHHHHHHHHcCCeEec
Confidence 1145677899999999985 4442 33 334557889999999999999986
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.7e-08 Score=107.87 Aligned_cols=95 Identities=24% Similarity=0.276 Sum_probs=68.6
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++...+||. ..|.-++.+--+|.. + .
T Consensus 27 ~~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~------------------R--------------~ 72 (490)
T 4g6z_A 27 RTRFAPSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDVE------------------R--------------S 72 (490)
T ss_dssp EEEECCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCGG------------------G--------------C
T ss_pred eEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCcc------------------c--------------c
Confidence 44555999999999999999998888884 355555544444321 0 0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+. |+.. .+...++....++++.+|.++|++|..
T Consensus 73 ~~~~~~~i~~dl~wlGl~--~d~~-~~~qS~r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 73 SQEAVDAILEGMAWLGLD--YDEG-PYYQMQRMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp CHHHHHHHHHHHHHTTCC--CSEE-EEEGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHcCCC--CCCC-CcccccCHHHHHHHHHHHHHCCCEEeC
Confidence 145777899999999985 4442 123445777889999999999999976
|
| >4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.9e-06 Score=91.40 Aligned_cols=98 Identities=19% Similarity=0.175 Sum_probs=66.7
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
.+-.+|.|||.||||||++.++.-.+|| ...|.-++. +|+. ++.. .
T Consensus 26 rtRFAPsPtG~LHiG~artAl~n~~~Ar--~~~G~fiLR---ieDt-----------------D~~R------------~ 71 (512)
T 4gri_A 26 RVRYAPSPTGLQHIGGIRTALFNYFFAK--SCGGKFLLR---IEDT-----------------DQSR------------Y 71 (512)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTCEEEEC---BCCC-----------------CTTS------------C
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEE---eCcC-----------------CCCc------------C
Confidence 3455699999999999999999999988 345543333 2332 2211 1
Q ss_pred HHHHHHHHHHHHHHhccccCCCC----ccc-cCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTR----ERF-TLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~----~~~-T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+..|-.. +|. ....++....++...+|.++|++|..
T Consensus 72 ~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 72 SPEAENDLYSSLKWLGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp CHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCcccc
Confidence 14567789999999998665211 111 12334566778899999999999975
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.4e-07 Score=96.49 Aligned_cols=94 Identities=28% Similarity=0.347 Sum_probs=66.3
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++.. ...+++.+.|+.-+|+.-.+ + +
T Consensus 7 ~~RFAPsPtG~LHiG~~rtal~n~-----l~Ar~~~g~~ilRieDtD~~---------------R-~------------- 52 (298)
T 1nzj_A 7 IGRFAPSPSGELHFGSLIAALGSY-----LQARARQGRWLVRIEDIDPP---------------R-E------------- 52 (298)
T ss_dssp EEEECCCTTSCCCHHHHHHHHHHH-----HHHHHTTCEEEEEECCSCGG---------------G-S-------------
T ss_pred EEEECcCCCCCccHHHHHHHHHHH-----HHHHhcCCeEEEEEecCCch---------------h-h-------------
Confidence 445569999999999999999644 44445566666555553211 0 0
Q ss_pred HHHHHHHHHHHHHHhccccCCCC-ccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTR-ERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~-~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+..| . .++ -.++....++++++|.++|++|..
T Consensus 53 ~~~~~~~I~~dL~~LGl~~D--~~~~~--qSer~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 53 VPGAAETILRQLEHYGLHWD--GDVLW--QSQRHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp CTTHHHHHHHHHHHTTCCCS--SCCEE--GGGCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCC--CCCee--eeCCHHHHHHHHHHHHHcCCcccC
Confidence 13467789999999998655 3 222 234667889999999999999974
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00028 Score=74.26 Aligned_cols=73 Identities=18% Similarity=0.096 Sum_probs=53.1
Q ss_pred cCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcC
Q 005849 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 616 (674)
Q Consensus 537 ~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~ 616 (674)
.+.+|+.+.|.||...... ..-+.-.++...| .++.+.++.+++|+|||||.||+|++.| .+|.+|-.+.+.
T Consensus 168 ~~~~~~v~~G~DQ~~~~~l-~rdla~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 168 HLGVDLAVGGIDQRKIHML-ARENLPRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp HTTCSEEEEEGGGHHHHHH-HHHHGGGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred hcCCCEEEechhhHHHHHH-HHHHHHhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 3578999999999763211 1112222333445 3667888889999999999999999987 499999988875
Q ss_pred C
Q 005849 617 T 617 (674)
Q Consensus 617 ~ 617 (674)
-
T Consensus 240 ~ 240 (323)
T 2cyb_A 240 Y 240 (323)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0041 Score=65.29 Aligned_cols=72 Identities=15% Similarity=-0.015 Sum_probs=49.5
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 615 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~ 615 (674)
+++|+.+.|.||.... +.+-++-. ++...| ..+.+.++...+|+|||||.+|+|+..| ++.+++.++=++..
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~r--~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRR--LHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHH--HHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred CCceEEecCchhHHHHHHHHHHHHH--hCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 3789999999997543 23333322 233334 3456778888899999999999999988 55666666655554
|
| >1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0069 Score=65.80 Aligned_cols=75 Identities=15% Similarity=0.070 Sum_probs=49.8
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhh-cCCCCcceeEeeeeEeCCCCccccccCCCccChhh-------H----Hhhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEF-TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID-------T----IKEF 604 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~-~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d-------l----l~~y 604 (674)
+.+|+.+.|.||.... ..+-++-- + .+..| ..+.+.++...+|+|||||.||+|+..| + .+.-
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~r--~~~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d~~tsp~~i~~ki~~~~ 260 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMRR--MYGQTDA--YGLTIPLVTKSDGKKFGKSESGAVWLDAEKTSPYEFYQFWINQS 260 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHH--HHCCCCC--EEEEECCCBCTTSCBTTBCSSSBCBSSTTTSCHHHHHHHHHTCC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHH--hcCCCCe--eEeecccccCCccccccCCCCCeEecCCCCCCHHHHHHHHhcCC
Confidence 4799999999997643 22223322 2 33334 3566788888999999999999998877 1 1123
Q ss_pred ChhHHHHHHhcC
Q 005849 605 GADALRFTISLG 616 (674)
Q Consensus 605 gaD~lR~~l~~~ 616 (674)
.+|+.+|+-+.+
T Consensus 261 D~~v~~~l~~~t 272 (420)
T 1jil_A 261 DEDVIKFLKYFT 272 (420)
T ss_dssp HHHHHHHHHHHC
T ss_pred chhHHHHHHHHH
Confidence 466777654443
|
| >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0066 Score=65.83 Aligned_cols=76 Identities=14% Similarity=0.031 Sum_probs=48.7
Q ss_pred CCcceeEEeehhhhhHH-HHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhh-------H----HhhhC
Q 005849 538 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID-------T----IKEFG 605 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d-------l----l~~yg 605 (674)
+.+|+.+.|.||..... .+-++-... ++..| ..+.+.++...+|+|||||.||+|+..| + .+.-.
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdlarr~~-~~~~~--~~lt~pll~~ldG~KMSKS~~naI~L~d~~tsp~~i~qki~~~~D 260 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELIRKTK-GEARA--FGLTIPLVTKADGTKFGKTESGTIWLDKEKTSPYEFYQFWINTDD 260 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHH-C--CC--EEEEECCCCCTTSCCTTCCSSCCCBSSTTTSCHHHHHHHHHTCCH
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhc-CCCCe--eecccccccCCCcccccCCCCCeEecCCCCCCHHHHHHHHhcCCc
Confidence 47999999999976442 222322220 33334 3566788888999999999999999877 1 11234
Q ss_pred hhHHHHHHhcC
Q 005849 606 ADALRFTISLG 616 (674)
Q Consensus 606 aD~lR~~l~~~ 616 (674)
+|+.+|+-+.+
T Consensus 261 ~~v~~~l~l~t 271 (419)
T 2ts1_A 261 RDVIRYLKYFT 271 (419)
T ss_dssp HHHHHHHHHHC
T ss_pred hhHHHHHHHHH
Confidence 66777654443
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0088 Score=65.05 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=49.4
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCC-ccChhh-----------HHhhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN-VIDPID-----------TIKEF 604 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN-~i~~~d-----------ll~~y 604 (674)
+.+|+.+.|.||.... ..+-++-- ++...| -.+.+.++...+|+|||||.|| +|+..| +.+.-
T Consensus 186 ~~~~i~~gG~DQ~~ni~lgrdlarr--~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d~~tsp~~i~qki~~~~ 261 (432)
T 2jan_A 186 HGCTLQIGGADQWGNIIAGVRLVRQ--KLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDPQMTSPYAWYQYFVNTA 261 (432)
T ss_dssp HCCCEEEECSTTHHHHHHHHHHHHH--HHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSSTTTSCHHHHHHHHHTCC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHH--hCCCCc--cccccccccCCCcCcCCCCCCCCeEEccCCCCCHHHHHHHHhcCC
Confidence 4799999999997643 22223222 233434 3566778888999999999999 998877 11223
Q ss_pred ChhHHHHHHhcC
Q 005849 605 GADALRFTISLG 616 (674)
Q Consensus 605 gaD~lR~~l~~~ 616 (674)
.+|+.+|+-+.+
T Consensus 262 D~~v~~~l~l~t 273 (432)
T 2jan_A 262 DADVIRYLRWFT 273 (432)
T ss_dssp HHHHHHHHHHHS
T ss_pred chhHHHHHHHHH
Confidence 466667654443
|
| >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.014 Score=63.63 Aligned_cols=57 Identities=32% Similarity=0.402 Sum_probs=39.7
Q ss_pred CcceeEEeehhhhhHH-HHHHHHhhhhcCCCCcceeEeeeeEeCCCCc-cccccCCCccChhh
Q 005849 539 PTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKTLGNVIDPID 599 (674)
Q Consensus 539 P~d~~~~G~Dii~~w~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~-KMSKS~gN~i~~~d 599 (674)
.+|+...|.||..... .+-++- .+... | ...+.+.++...+|. |||||.||+|++.|
T Consensus 187 ~~~l~~gG~DQ~~ni~l~rdlar--r~~~~-~-~~~lt~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 187 RADVEMGGTDQRFNLLVGREVQR--AYGQS-P-QVCFLMPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp TCSEEEEEGGGHHHHHHHHHHHH--HTTCC-C-CEEEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred CccEEEechHHHHHHHHHHHHHH--HhCCC-C-ceEeecccccCCCCccccCcCCCCeeCCCC
Confidence 4899999999975332 222222 22233 3 345677888889996 99999999999866
|
| >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0057 Score=65.01 Aligned_cols=58 Identities=22% Similarity=0.152 Sum_probs=28.9
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
+.+|+...|.||.... +.+-++-- ++...| -.+.+.++...+|+|||||.||+|+..|
T Consensus 209 ~~~~i~p~G~DQ~~~i~l~rdla~r--~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 209 YGCRVQLGGSDQLGNIMSGYEFINK--LTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp HCCCEEEEEGGGHHHHHHHHHHHHH--HSSCCC--EEEEECCCC-------------CCBSST
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHH--hCCCCc--cccccccccCCCcccccCCCCCeeeccC
Confidence 3799999999997643 23333322 333444 3466778888899999999999999877
|
| >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.013 Score=61.90 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=40.8
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhh-cC---CCCcceeEe-eeeEeCCCCccccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEF-TG---SVPFSHVYL-HGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~-~~---~~Pf~~v~~-hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
|-+|+...|.||.... +.+-++-.+.. .+ ..| ..++. +.++..++|+|||||.+|+|++.|
T Consensus 152 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS~~n~I~L~d 218 (340)
T 2g36_A 152 YKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKSYGNIINLEI 218 (340)
T ss_dssp TTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGGGTCCCBTTC
T ss_pred hCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCCCCCeEeeeC
Confidence 5689999999997643 33333322211 12 245 33444 567888999999999999998766
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0095 Score=62.44 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=40.5
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhh-cC---CCCcceeE--eeeeEeCCCCccccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEF-TG---SVPFSHVY--LHGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~-~~---~~Pf~~v~--~hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
|-+|+...|.||.... +.+-++--+.. .+ ..| ..++ .+.++..++|+|||||.+|.|++.|
T Consensus 138 ~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P-~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLP-EARVNEEVAVVVGTDGAKMSKSYQNTIDIFS 205 (322)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCC-EEECCCSSCCCBCTTSSBCCGGGTCCCBSSC
T ss_pred hCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCc-hhhhccccccccCCCCCcCCCCCCCceecCC
Confidence 5679999999997543 33444322211 01 234 3344 3668888999999999999998765
|
| >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0092 Score=64.22 Aligned_cols=60 Identities=23% Similarity=0.094 Sum_probs=39.1
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhh---h---------hc--C-CCCcceeEeeeeEeCCCCccccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGI---E---------FT--G-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~---~---------~~--~-~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
+.+|+.+.|.||.... ..+-++--. . +. + ..| ..+.+.++...+|+|||||.||+|++.|
T Consensus 231 ~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 231 QGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDEC--VGFTVPLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSC--EEEECCCCBCTTCCBTTBCSSSBCBSST
T ss_pred CCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCc--cccccccCcCCchhhccCCCCCeeeccC
Confidence 3799999999995432 112222110 0 00 0 122 3456778888999999999999999877
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.018 Score=61.68 Aligned_cols=58 Identities=19% Similarity=0.144 Sum_probs=33.2
Q ss_pred CCcceeEEeehhhhhHH-HHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCC-ccChhh
Q 005849 538 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN-VIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN-~i~~~d 599 (674)
+.+|+.+.|.||..... .+.++-. +....| ..+.+.++..++|+|||||.+| +|++.|
T Consensus 177 ~~a~~v~~G~DQ~~~~~l~rdl~~r--~~~~~p--~~l~~pll~gldG~KMSKS~~ns~I~L~d 236 (372)
T 1n3l_A 177 LKVDAQFGGIDQRKIFTFAEKYLPA--LGYSKR--VHLMNPMVPGLTGSKMSSSEEESKIDLLD 236 (372)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHGGG--GTCCCC--EEEEECCCCCSSCC-------CCSCBTTC
T ss_pred hcCCEEEcChhHHHHHHHHHHHHHH--cCCCCC--EEEecCccCCCCcccccCCCCCCeEeccC
Confidence 56789999999976442 2223222 223345 3556788888999999999999 788654
|
| >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.025 Score=60.96 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=31.5
Q ss_pred CCcceeEEeehhhhhHH-HHHHHHhhhhcCCCCcceeEeeeeEeCCC-CccccccCCCc-cChhh
Q 005849 538 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-GRKMSKTLGNV-IDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~-G~KMSKS~gN~-i~~~d 599 (674)
|.+|+.+.|.||..... .+.++ -.+....| ..+.+.++..++ |+|||||.+|. |++.|
T Consensus 181 ~~~~~v~~G~DQ~~~~~l~rdl~--~r~~~~~p--~~l~~pll~gl~~G~KMSKS~~ns~I~L~D 241 (394)
T 2dlc_X 181 LDVDCQFGGVDQRKIFVLAEENL--PSLGYKKR--AHLMNPMVPGLAQGGKMSASDPNSKIDLLE 241 (394)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCCCCC----------CCSCBTTC
T ss_pred hCCCEEecCccHHHHHHHHHHHH--HHcCCCCC--EEEecccccCCCCCCcCCCCCCCCEEeccC
Confidence 66899999999976432 22222 22333445 456678888899 99999999996 88654
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.041 Score=58.30 Aligned_cols=62 Identities=26% Similarity=0.354 Sum_probs=40.1
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhh-hcC---CCCcceeEe-eeeEeCCCCc-cccccCCCccChhhH
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIE-FTG---SVPFSHVYL-HGLIRDSQGR-KMSKTLGNVIDPIDT 600 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~-~~~---~~Pf~~v~~-hg~v~d~~G~-KMSKS~gN~i~~~dl 600 (674)
|-+|+...|.||.... +.+-++-.+. ..| ..| ..++. +.++..++|+ |||||.+|.|++.|=
T Consensus 161 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~ 229 (351)
T 1yi8_B 161 FGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS 229 (351)
T ss_dssp HTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC
T ss_pred cCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCCCCCeecCCCC
Confidence 5679999999997643 3333332211 112 345 33443 4678888997 999999999987553
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.047 Score=57.01 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=38.3
Q ss_pred CcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCC-ccccccCCCccChhhH
Q 005849 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG-RKMSKTLGNVIDPIDT 600 (674)
Q Consensus 539 P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G-~KMSKS~gN~i~~~dl 600 (674)
-+|+.+.|.||.... .+...++ ...| .+..+.++..++| +|||||.||+|++.|=
T Consensus 163 ~~~~v~~G~DQ~~~~---~l~R~i~--~~~~--~~~~~~~l~~l~G~~KMSKS~~~~I~L~d~ 218 (314)
T 2zp1_A 163 GVDVAVGGMEQRKIH---MLARELL--PKKV--VCIHNPVLTGLDGEGKMSSSKGNFIAVDDS 218 (314)
T ss_dssp TCSEEEEEGGGHHHH---HHHHHHS--SSCC--EEEEECCCBCTTSSSBCCTTTTCSCBTTCC
T ss_pred CCCEEEcChhHHHHH---HHHHHhc--CCCc--EEeeccccccCCcccccCCCCcceecCCCC
Confidence 478999999997633 2222222 2334 3455678888999 7999999999987553
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.044 Score=57.74 Aligned_cols=60 Identities=27% Similarity=0.451 Sum_probs=39.3
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhh-hcC---CCCcceeEee---eeEeCCCC-ccccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIE-FTG---SVPFSHVYLH---GLIRDSQG-RKMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~-~~~---~~Pf~~v~~h---g~v~d~~G-~KMSKS~gN~i~~~d 599 (674)
|-+|+...|.||.... +.+-++-.+- ..| ..| ..+++ .++..++| +|||||.+|.|++.|
T Consensus 140 ~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P--~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d 208 (337)
T 2el7_A 140 YKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP--QALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE 208 (337)
T ss_dssp TTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCC--EEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS
T ss_pred hCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCC--eeecccccccccCCCCccccCCCCCCeeeCcC
Confidence 5689999999997643 2333332110 012 345 33333 58888999 999999999998765
|
| >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.041 Score=59.18 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=28.5
Q ss_pred cceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCCccChhh
Q 005849 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGNVIDPID 599 (674)
Q Consensus 540 ~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN~i~~~d 599 (674)
+|+...|.||.... +.+-++-- ++...| .++.+.++..++| .|||||.+|+|++.|
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPR--LGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHH--HTCCCC--EEEEECCCCCC-------------CCBTTC
T ss_pred ceEEEeccchHHHHHHHHHHHHH--cCCCCc--eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 67889999997643 33333322 333445 3556778888999 799999999998654
|
| >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.066 Score=57.01 Aligned_cols=58 Identities=22% Similarity=0.133 Sum_probs=37.9
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCC-----------------Ccccccc-CCCccChh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-----------------GRKMSKT-LGNVIDPI 598 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~-----------------G~KMSKS-~gN~i~~~ 598 (674)
|-+|+.+.|.||.... +.+-++ -.++...| .++.+.++..++ |+||||| .+|+|++.
T Consensus 176 ~~~~~v~~G~DQ~~~~~l~rdla--~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~ 251 (364)
T 2cya_A 176 MDLDIALGGMDQRKAHMLARDVA--EKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVV 251 (364)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHH--TTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBTT
T ss_pred cCCCEEeccchHHHHHHHHHHHH--HHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeecc
Confidence 5579999999997543 222222 22233445 346677888887 7999999 78999864
Q ss_pred h
Q 005849 599 D 599 (674)
Q Consensus 599 d 599 (674)
|
T Consensus 252 d 252 (364)
T 2cya_A 252 D 252 (364)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.059 Score=63.77 Aligned_cols=79 Identities=20% Similarity=0.388 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCcccccccc--------------cccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceE
Q 005849 372 EARKKLWSDLEETGLAVKKEPHT--------------LRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 437 (674)
Q Consensus 372 ~ar~~i~~~L~~~g~~~~~~~~~--------------~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~ 437 (674)
++-..++..|.++|++...+... .....|+|||.+++.+..+|||++++++++++++.++.. .-
T Consensus 154 ~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~--~~ 231 (880)
T 4arc_A 154 RWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKL--DH 231 (880)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGC--TT
T ss_pred HHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhc--cc
Confidence 45567888899999876533211 123568999999999999999999999999999998753 24
Q ss_pred echhHHHHHHHHHhc
Q 005849 438 MPERFEKIYNHWLSN 452 (674)
Q Consensus 438 ~P~~~~~~~~~~l~~ 452 (674)
+|+..+....+||..
T Consensus 232 wp~~v~~~~~~wig~ 246 (880)
T 4arc_A 232 WPDTVKTMQRNWIGR 246 (880)
T ss_dssp SCHHHHHHHHHHHCE
T ss_pred ccHHHHHHHHhhhcc
Confidence 799999999999953
|
| >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.068 Score=58.17 Aligned_cols=58 Identities=22% Similarity=0.174 Sum_probs=35.0
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCC-ccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN-~i~~~d 599 (674)
|-+++...|.||.... +.+-++-. ++...| .++.+.++..++| +|||||.+| +|++.|
T Consensus 248 ~~~~lvp~G~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYFRVCRDVADK--LKYSKP--ALLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHHHHH--HTSCCC--EEEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHHHHHHHHHHHHH--hCCCCc--eeeccccccCCCCCccccCCCCCCCeEeccC
Confidence 4467888999997643 33333322 223456 3567788889999 999999999 898866
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.078 Score=56.90 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=37.7
Q ss_pred cceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCC-ccChh
Q 005849 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPI 598 (674)
Q Consensus 540 ~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN-~i~~~ 598 (674)
+|+...|.||.... +.+-++-. ++...| ..+.+.++..++| +|||||.+| +|++.
T Consensus 208 a~~vpvG~DQ~~hl~l~Rdla~r--~n~~~p--~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~ 266 (392)
T 3jxe_A 208 RCLIPAAIDQDPYWRLQRDFAES--LGYYKT--AALHSKFVPSLTSLSGKMSASKPETAIYLT 266 (392)
T ss_dssp CEEEEEEGGGHHHHHHHHHHTGG--GTSCCC--EEEEECCCCCSSCSSSCCCTTSGGGCCBTT
T ss_pred CceeecccchHHHHHHHHHHHHH--cCCCCC--eeeecccccCCCCCccccccCCCCCeeeCC
Confidence 57789999997543 33333322 233455 4566788888898 599999998 88653
|
| >3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.094 Score=55.97 Aligned_cols=57 Identities=23% Similarity=0.147 Sum_probs=37.6
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCC-CCcceeEeeeeEeCC-CCc-cccccC-CCccChh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGS-VPFSHVYLHGLIRDS-QGR-KMSKTL-GNVIDPI 598 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~-~Pf~~v~~hg~v~d~-~G~-KMSKS~-gN~i~~~ 598 (674)
+-+|+...|.||.... +.+-++-.+ +.. .| .++.+.++..+ +|. |||||. +|+|++.
T Consensus 199 l~ad~vpgG~DQ~~~l~l~Rdla~r~--~~~~~~--~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~ 260 (373)
T 3vgj_A 199 LNVDICQLGIDQRKVNMLAREYCDIK--KIKKKP--VILSHGMLPGLLEGQEKMSKSDENSAIFMD 260 (373)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHHH--TCSCCC--EEEEBCCCCCSSTTCCSCCSSSTTCCCBTT
T ss_pred cCCcEEEcchhhHHHHHHHHHHHHHh--CCCCCc--eEEeCCeeecCCCCCCCCcCCCCCCeeecC
Confidence 4578999999997543 333343322 222 23 35567788876 885 999999 5898864
|
| >3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.57 E-value=0.099 Score=56.32 Aligned_cols=57 Identities=25% Similarity=0.248 Sum_probs=39.6
Q ss_pred CcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccC-CCccChhh
Q 005849 539 PTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTL-GNVIDPID 599 (674)
Q Consensus 539 P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~-gN~i~~~d 599 (674)
-+++...|.||.... +.+-++--+ +...| .++.+.++..++| .|||||. +|+|++.|
T Consensus 243 ~a~lvpvG~DQ~~~i~l~Rdla~r~--~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 243 AMCLVPAAVDQDPFFRLARDKAKAL--GEKKP--SSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHH--TCCCC--EEEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CCeEEeeccchHHHHHHHHHHHHHc--CCCCc--eeeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 467888999997644 334444332 33445 3556788888999 6999998 78998755
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.16 Score=54.45 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=38.3
Q ss_pred cceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCc-ccccc-CCCccChhh
Q 005849 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKT-LGNVIDPID 599 (674)
Q Consensus 540 ~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~-KMSKS-~gN~i~~~d 599 (674)
.++...|.||.... +.+-++-. ++...| .++.+.++..++|. ||||| .+|.|++.|
T Consensus 225 a~~VpvG~DQ~~hl~l~Rdla~r--~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 225 RCLVLDSIKNVQFHSIIDQIATT--LNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHH--HTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC
T ss_pred ccccccccchHHHHHHHHHHHHH--cCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC
Confidence 45666699997644 44444433 333456 45577788888995 99999 899997644
|
| >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A | Back alignment and structure |
|---|
Probab=91.93 E-value=0.11 Score=54.43 Aligned_cols=61 Identities=23% Similarity=0.247 Sum_probs=38.4
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhh--hc--CCCCcceeEe--eeeEeCCCC--ccccccCCC-c--cChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIE--FT--GSVPFSHVYL--HGLIRDSQG--RKMSKTLGN-V--IDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~--~~--~~~Pf~~v~~--hg~v~d~~G--~KMSKS~gN-~--i~~~d 599 (674)
|-+|+...|.||.... +.+-++-.+. +. -..| .-++. +.++..++| +|||||.+| . |++.|
T Consensus 136 ~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P-~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d 208 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIP-EARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD 208 (328)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCC-EEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC
T ss_pred hCCCEEecccchHHHHHHHHHHHHHhCcccccccCCC-eeeeccccccccCCCCCccCCCCCCCCcCceeeecC
Confidence 5689999999997543 3333332211 11 1234 23332 467778889 999999999 7 87655
|
| >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=91.66 E-value=0.12 Score=55.59 Aligned_cols=55 Identities=22% Similarity=0.157 Sum_probs=26.3
Q ss_pred ceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCC-ccChhh
Q 005849 541 TMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 599 (674)
Q Consensus 541 d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN-~i~~~d 599 (674)
.+...|.||.... +.+-++-- ++...| .++.+.++..++| .|||||.+| +|+..|
T Consensus 222 ~lvp~G~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 222 CLVPHAIDQDPYFRMVRDVAPR--LGYLKP--SSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEEGGGHHHHHHHHHHTGG--GTCCCC--EEEEECCCCC-------------CCCCBTTC
T ss_pred eecccccchHHHHHHHHHHHHH--cCCCCc--eeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 3567899997543 23333322 333445 4566788888899 799999988 888654
|
| >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.1 Score=55.24 Aligned_cols=57 Identities=19% Similarity=0.047 Sum_probs=37.0
Q ss_pred CcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCC-CC-ccccccC-CCccChhh
Q 005849 539 PTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDS-QG-RKMSKTL-GNVIDPID 599 (674)
Q Consensus 539 P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~-~G-~KMSKS~-gN~i~~~d 599 (674)
-+|+...|.||.... +.+-++- .++...| .+..+.++..+ +| +|||||. +|+|++.|
T Consensus 186 ~~~~~~~G~DQ~~~i~l~Rdia~--r~~~~~p--~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 186 GIDICQLGIDQRKVNMLAIEYAN--DRGLKIP--ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp CCSEECCBGGGHHHHHHHHHHHH--HTTCCCC--EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred CCcEEEeccChHHHHHHHHHHHH--HhCCCCc--eeecCccccCCCCcccccccCCCCCeEeecC
Confidence 478889999997543 2222322 2333335 34556777777 67 7999999 68898644
|
| >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A | Back alignment and structure |
|---|
Probab=91.60 E-value=0.13 Score=55.90 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=38.6
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCC-ccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN-~i~~~d 599 (674)
|-++++..|.||.... +.+-++ --++...| .++.+.++..++| +|||||.+| +|++.|
T Consensus 255 ~~~~lVpvG~DQ~~~i~l~Rdla--~r~~~~~P--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 255 DIQCLIPCAIDQDPYFRMTRDVA--PRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred CCceEEEeehhhHHHHHHHHHHH--HHhCCCCc--eEeecccccCCCCCccccCCCCCCCeeeccC
Confidence 3445666799997643 222222 22223456 3467788889999 899999999 898754
|
| >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.12 Score=54.69 Aligned_cols=60 Identities=27% Similarity=0.268 Sum_probs=39.2
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhh-hcC---CCCcceeEe---eeeEeCCCC--ccccccCCC---ccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIE-FTG---SVPFSHVYL---HGLIRDSQG--RKMSKTLGN---VIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~-~~~---~~Pf~~v~~---hg~v~d~~G--~KMSKS~gN---~i~~~d 599 (674)
|-+|+...|.||.... +.+-++-.+. ..| ..| ..++ +.++..++| +|||||.+| +|++.|
T Consensus 146 ~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P--~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLP--QFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp TCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCC--EEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred hCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCC--eeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 5689999999997643 3333332221 012 245 3334 467788888 999999999 898766
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=90.73 E-value=0.18 Score=55.54 Aligned_cols=59 Identities=22% Similarity=0.147 Sum_probs=38.9
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCC-ccChhhH
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPIDT 600 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN-~i~~~dl 600 (674)
|-++++..|.||.... +.+-++ -.++...| .++.+.++..++| .|||||.+| +|++.|=
T Consensus 302 ~~~~~VpvG~DQ~~~i~l~Rdla--~r~~~~~p--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~ 364 (477)
T 1r6t_A 302 DIQCLIPCAIDQDPYFRMTRDVA--PRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 364 (477)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCEETTEEEEECCTTSTTCCCBTTCC
T ss_pred CCceeEeccccHHHHHHHHHHHH--HHhCCCCc--eeeecccccCCCCCccccCCCCCCCceeecCC
Confidence 3445666899997643 222222 22233456 3566788889999 899999999 8987543
|
| >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.17 E-value=0.22 Score=53.21 Aligned_cols=58 Identities=24% Similarity=0.099 Sum_probs=37.7
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcC--------C-CCcceeEeeeeEeCCCC------------------ccccc
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTG--------S-VPFSHVYLHGLIRDSQG------------------RKMSK 589 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~--------~-~Pf~~v~~hg~v~d~~G------------------~KMSK 589 (674)
|-+|+...|.||.... +.+-++-. ++. . .| .++.+.++..++| +||||
T Consensus 179 ~~~~~vp~G~DQ~~~i~l~rdla~r--~n~~~~~~~g~~~~~--~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSK 254 (375)
T 2cyc_A 179 QGVTIAHAGMDQRKAHVIAIEVAQK--LRYHPIVHEGEKLKP--VAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSK 254 (375)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHGGG--CSSSCEEETTEEECC--EEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGG
T ss_pred hCCCeecccchHHHHHHHHHHHHHH--hCCcccccccccCcc--EEeccccccCCCCcccccccchhhhhhhhhhhcccC
Confidence 4579999999997543 22222211 222 1 23 2455678888888 89999
Q ss_pred cC-CCccChhh
Q 005849 590 TL-GNVIDPID 599 (674)
Q Consensus 590 S~-gN~i~~~d 599 (674)
|. +|+|++.|
T Consensus 255 S~~~~~I~L~d 265 (375)
T 2cyc_A 255 SKPYSAVFIHD 265 (375)
T ss_dssp SCGGGSCBTTC
T ss_pred CCCCCeeccCC
Confidence 98 78898754
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=0.26 Score=58.53 Aligned_cols=77 Identities=22% Similarity=0.418 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCcccccc--------------cccccccccC-CCCcccceeeccccccchHHHHHHHHHHHhCCce
Q 005849 372 EARKKLWSDLEETGLAVKKEP--------------HTLRVPRSQR-GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (674)
Q Consensus 372 ~ar~~i~~~L~~~g~~~~~~~--------------~~~~~p~~~r-~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~ 436 (674)
+.-..++..|.++|++...+. .+.....|+| ||.+++.+..+|||++++++++++++.++. ..
T Consensus 134 ~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~--~~ 211 (878)
T 2v0c_A 134 RWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEG--LN 211 (878)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTT--CB
T ss_pred HHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhh--cC
Confidence 455678899999998754221 1122456899 999999999999999999999999998864 34
Q ss_pred EechhHHHHHHHHHh
Q 005849 437 IMPERFEKIYNHWLS 451 (674)
Q Consensus 437 ~~P~~~~~~~~~~l~ 451 (674)
.|+..++...+||.
T Consensus 212 -~p~~~~~~~~~wi~ 225 (878)
T 2v0c_A 212 -WPEKVKAMQRAWIG 225 (878)
T ss_dssp -SCHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHhc
Confidence 89999999999995
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.13 Score=53.86 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=25.4
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG 140 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~G 140 (674)
-|||.|||||..+.+.. +.++++ |+++++..| |-|+
T Consensus 11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha 46 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHA 46 (322)
T ss_dssp CCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHH
T ss_pred CCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCee
Confidence 46689999999876543 455655 999888765 4443
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=87.90 E-value=0.29 Score=56.25 Aligned_cols=57 Identities=23% Similarity=0.130 Sum_probs=37.1
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCC-CCcceeEeeeeEeCC-CC-ccccccCC-CccChh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGS-VPFSHVYLHGLIRDS-QG-RKMSKTLG-NVIDPI 598 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~-~Pf~~v~~hg~v~d~-~G-~KMSKS~g-N~i~~~ 598 (674)
+-+|+...|.||.... +.+-++-. ++.. .| .++.+.++..+ +| +|||||.+ |+|+..
T Consensus 182 ~~ad~vpvG~DQ~~~l~l~Rdla~r--~n~~~~p--~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~ 243 (690)
T 3p0j_A 182 LKADICQLGLDQRKVNMLAREYCDL--IGRKLKP--VILSHHMLAGLKQGQAKMSKSDPDSAIFME 243 (690)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHH--TTCCCCC--EEEEBCCCCCSSTTCSSCBTTBGGGSCBTT
T ss_pred hCCCEEeccccHHHHHHHHHHHHHH--hCCCCCc--eEeecCeeecCCCCCcCCCCCCCCCeeecc
Confidence 4578999999997643 33333322 2222 13 34567788887 88 49999997 788753
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=87.55 E-value=0.47 Score=48.96 Aligned_cols=57 Identities=23% Similarity=0.140 Sum_probs=22.1
Q ss_pred cceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhH
Q 005849 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDT 600 (674)
Q Consensus 540 ~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dl 600 (674)
.+..+-|.|.+-.-..... +..++....| .+..++++++.+|+|||||.||+ .+++.
T Consensus 185 iThvIrG~D~l~~t~~q~~-l~~alG~~~p--~~~H~pll~~~~g~KLSKR~g~~-~v~~~ 241 (298)
T 1nzj_A 185 VTEIVRGADLIEPTVRQIS-LYQLFGWKVP--DYIHLPLALNPQGAKLSKQNHAP-ALPKG 241 (298)
T ss_dssp CCEEEEEGGGHHHHHHHHH-HHHHHTCCCC--EEEEECBCCC--------------CCCSS
T ss_pred CCEEEeCccccccHHHHHH-HHHHcCCCCC--eEEEeeeeECCCCCcccccCCcc-ChhcC
Confidence 3444559998744333222 2222322333 66666788899999999999997 44443
|
| >3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 | Back alignment and structure |
|---|
Probab=86.39 E-value=0.47 Score=49.95 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=36.0
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhh-cC---CCCcceeEee---eeEeCC-CC-ccccccCC---CccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEF-TG---SVPFSHVYLH---GLIRDS-QG-RKMSKTLG---NVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~-~~---~~Pf~~v~~h---g~v~d~-~G-~KMSKS~g---N~i~~~d 599 (674)
|-+|+...|.||.... +++-++-.+.. .+ ..| ..+++ .++..+ +| +|||||.+ |.|++.|
T Consensus 151 ~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p--~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 223 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIP--EPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE 223 (346)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCC--EECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS
T ss_pred hCceEEEeccchHHHHHHHHHHHHHhccccCCccccc--chhccCCcccCccCCCCccccCCCCCCCCceecCCC
Confidence 4578999999998643 45555433321 11 123 33333 345556 67 59999997 6887643
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=85.30 E-value=0.41 Score=52.09 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=33.8
Q ss_pred eeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCc--cccccCCC-ccCh
Q 005849 542 MLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR--KMSKTLGN-VIDP 597 (674)
Q Consensus 542 ~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~--KMSKS~gN-~i~~ 597 (674)
+...|.||.... +++-++-. ++...| .++.+.++..++|. |||||.+| .|..
T Consensus 290 ~VPvG~DQ~~hlel~Rdia~r--fn~~~p--~~~~~~~l~gLdG~~~KMSKS~~ns~I~l 345 (451)
T 3foc_A 290 LIASGIEQDPYFRLARDLAPR--MGHPKN--AYLLGKFLPGLQGSGTKMSASDPNSAIYL 345 (451)
T ss_dssp EEEECTTTHHHHHHHHHHTTT--TTSCCC--EEEEECCCCBTTBTTCCCCTTCGGGSCBT
T ss_pred eeeeecchHHHHHHHHHHHHH--hCCCCC--eeecCCcccCCCCCCCccCCCCCCCeeee
Confidence 556799998654 34444322 222334 45567778888885 99999987 6664
|
| >3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=85.14 E-value=0.24 Score=52.13 Aligned_cols=62 Identities=23% Similarity=0.293 Sum_probs=36.9
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhh-cCC--CCc--ceeEe---eeeEeCC-CC-ccccccC---CCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEF-TGS--VPF--SHVYL---HGLIRDS-QG-RKMSKTL---GNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~-~~~--~Pf--~~v~~---hg~v~d~-~G-~KMSKS~---gN~i~~~d 599 (674)
|-+|+...|.||.... +++-++-.+.. .+. .+| ...++ +.++..+ +| +|||||. +|.|.+.|
T Consensus 142 ~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 217 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE 217 (341)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC
T ss_pred cCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC
Confidence 4578999999998644 55555533321 121 111 12233 3456666 57 6999999 78997643
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=84.59 E-value=1.2 Score=46.48 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=23.3
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+.+..| --|||.|||||+. .+. .+.++++ .|+++++..|
T Consensus 33 ~~vy~G-~~PTg~lHlG~l~-~l~--~~~~lq~-~g~~~~~~i~ 71 (323)
T 2cyb_A 33 PRAYVG-YEPSGEIHLGHMM-TVQ--KLMDLQE-AGFEIIVLLA 71 (323)
T ss_dssp CEEEEE-ECCCSCCBHHHHH-HHH--HHHHHHH-TTCEEEEEEC
T ss_pred CEEEEC-cCCCCcchHHHHH-HHH--HHHHHHH-CCCcEEEEEC
Confidence 344444 2577999999963 222 3444444 4888777654
|
| >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.52 E-value=1.4 Score=47.31 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
-|||.|||||+++.+. +.++++ .|+++++..|
T Consensus 47 ~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~ 78 (394)
T 2dlc_X 47 APTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLA 78 (394)
T ss_dssp CCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEc
Confidence 3479999999877654 444554 6888777654
|
| >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=82.26 E-value=0.48 Score=50.33 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=21.2
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
-|||.||||| +..+. .+.++++ .|+++++..|
T Consensus 43 ~PTg~lHlG~-l~~l~--~~~~lQ~-~G~~~~~~ia 74 (364)
T 2cya_A 43 EPSGVAHIGW-LVWMY--KVKDLVE-AGVDFSVLEA 74 (364)
T ss_dssp CCCSSCBTHH-HHHHH--HHHHHHH-TTCEEEEEEC
T ss_pred CCCCCccHhH-HHHHH--HHHHHHH-CCCCEEEEEe
Confidence 4579999999 54332 3444444 4899888766
|
| >3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* | Back alignment and structure |
|---|
Probab=81.74 E-value=1.4 Score=46.73 Aligned_cols=58 Identities=19% Similarity=0.082 Sum_probs=36.2
Q ss_pred cceeEEeehhhhh-HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCC-CccCh
Q 005849 540 TTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLG-NVIDP 597 (674)
Q Consensus 540 ~d~~~~G~Dii~~-w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~g-N~i~~ 597 (674)
+.+..-|.||... =+++-++--+.-.-+.|......+.++-.++|.|||||.. |+|..
T Consensus 209 a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l 268 (372)
T 3a04_A 209 HVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIFL 268 (372)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCBT
T ss_pred ceecccchhhHHHHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCccccc
Confidence 4577789999853 3555555332211112223566677777889999999984 46654
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=80.72 E-value=0.75 Score=49.23 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=29.2
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCC
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA 139 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~ 139 (674)
++++.+..| --|||.|||||..+.+. ..+++...|++|.+..| |-|
T Consensus 71 ~~p~~i~sG-~~PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia-D~h 116 (392)
T 3jxe_A 71 GRGFFLYTG-RGPSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQIT-DDE 116 (392)
T ss_dssp TCCCEEEEE-ECCSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEEC-HHH
T ss_pred CCCeEEEec-cCCCCchhHHHHHHHHH---HHHHHHhcCCceEEEec-chH
Confidence 344555555 24569999999887642 22344446998888776 444
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=80.30 E-value=2 Score=45.58 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=22.6
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 101 VTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 101 ~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
|||.|||||.++.+. +.++++ .|+++++..|
T Consensus 44 PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 44 TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 679999999877655 445555 6888777654
|
| >3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=80.04 E-value=1.1 Score=47.76 Aligned_cols=62 Identities=23% Similarity=0.213 Sum_probs=35.4
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCc--ceeEee---eeEeCC-CC-ccccccC---CCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPF--SHVYLH---GLIRDS-QG-RKMSKTL---GNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf--~~v~~h---g~v~d~-~G-~KMSKS~---gN~i~~~d 599 (674)
|-+|+...|.||.... +++-++-.+...-+.+| ...+++ ..+..+ +| +|||||. +|.|.+.|
T Consensus 170 ~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 170 YGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC
T ss_pred hCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC
Confidence 4578999999998543 45555433221111111 122332 234444 44 7999999 89997643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 674 | ||||
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 7e-70 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 1e-54 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 1e-50 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 6e-48 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 3e-37 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 5e-43 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 5e-36 | |
| d1wkaa1 | 143 | b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) | 3e-31 | |
| d1ffya2 | 194 | b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (Il | 1e-26 | |
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 8e-23 | |
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 5e-17 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 3e-21 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 7e-19 | |
| d1h3na2 | 192 | b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS | 4e-21 | |
| d1udza_ | 179 | b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {T | 1e-19 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 1e-16 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 2e-16 | |
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 3e-11 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 4e-08 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 9e-06 |
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 233 bits (595), Expect = 7e-70
Identities = 85/575 (14%), Positives = 160/575 (27%), Gaps = 89/575 (15%)
Query: 61 KTFDFTS-EERIYNWWESQGYFKPNFERGSDP-FVISMPPPNVTGSLHMGHAMFVTLEDI 118
+ ++ + E + +WE +G+ K G + + P +G LHMGH T+ D+
Sbjct: 2 EKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDV 61
Query: 119 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178
+ R+ RM+G L G D G+ + K F +W
Sbjct: 62 LARFRRMQGYEVLHPMGWDAFGLPAENAALK----------------FGVHPKDWTYANI 105
Query: 179 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238
++ +G DW RE T + + R F+++ EKGL Y+ +VNW P QT
Sbjct: 106 RQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTV 165
Query: 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298
+++ +V + +L I L +
Sbjct: 166 LANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKD--------LEGLNWPEKVK 217
Query: 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 358
+IS ++ + +++ +
Sbjct: 218 AMQRAWIGRLRDWLISR--------------------------QRYWGTPIPMVHCEACG 251
Query: 359 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI-EPLVSKQWFV 417
K + + ++ P + GG + +F
Sbjct: 252 VVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFF- 310
Query: 418 TMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKE 477
Y + D +PV +G
Sbjct: 311 -----------------------DSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGV 347
Query: 478 EEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 537
E ++ K + + + F+ + T P +
Sbjct: 348 EHAVLHLLYSRFFTKFLHDL----GMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRL 403
Query: 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 597
T + + + MG E + G + + MSK+ GN +
Sbjct: 404 PEPTRIRLEIPESALSLEDVRKMGAEL-------RPHEDGTLHLWKPAVMSKSKGNGVMV 456
Query: 598 IDTIKEFGADALRFTI-SLGTAGQDLSLSIERLTA 631
+KE GAD R TI ++ + E +
Sbjct: 457 GPFVKEQGADIARITILFAAPPENEMVWTEEGVQG 491
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 190 bits (484), Expect = 1e-54
Identities = 111/239 (46%), Positives = 149/239 (62%), Gaps = 3/239 (1%)
Query: 398 PRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457
R G IE + QW++ M PLAE+ L + +G++ +PER++K+ WL N+KDW
Sbjct: 189 ETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWN 248
Query: 458 ISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSA 517
ISRQLWWGH+IP WY + V R + + + + +D DV DTWFSSA
Sbjct: 249 ISRQLWWGHQIPAWY-CEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSA 307
Query: 518 LWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHG 577
LWP STLGWP+ +D K FYP +L TG+DILF WV+RM + G F G PF V LHG
Sbjct: 308 LWPLSTLGWPE-ETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHG 366
Query: 578 LIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFT-ISLGTAGQDLSLSIERLTANKAF 635
L+ D +G+KMSK+ GNVIDP++ ++ +GADALRF I L T GQD+ L + L + F
Sbjct: 367 LVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNF 425
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 179 bits (455), Expect = 1e-50
Identities = 105/198 (53%), Positives = 135/198 (68%), Gaps = 2/198 (1%)
Query: 59 LPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
LPK +D S E + W + + G PFVI MPPPNVTGSLHMGHA+ +L+D
Sbjct: 3 LPKAYDPKSVEPKWAEKWAKNPFVANP-KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQD 61
Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
++RY RM+G +WLPGTDHAGIATQ+VVE++L EG R +L R++F +RVW+WKE+
Sbjct: 62 ALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEES 121
Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
GGTI Q+KRLGAS DW+RE FT+DE+ SRAV AF R + +GL Y+ +VNW P +T
Sbjct: 122 GGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCET 181
Query: 238 AVSDLEVEYSEEPGTLYY 255
+SDLEVE GT
Sbjct: 182 TLSDLEVETCSRCGTPIE 199
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 173 bits (438), Expect = 6e-48
Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 19/256 (7%)
Query: 392 PHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS 451
L P R + ++ WF+ ++ + + P E Y WL
Sbjct: 192 EVALGYPHCWRCSTPLMYYATESWFIKNTLFKDEL-IRNNQEIHWVPPHIKEGRYGEWLK 250
Query: 452 NIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALE-----------------KAH 494
N+ DW +SR +WG +P+W +E + + +
Sbjct: 251 NLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVE 310
Query: 495 QKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWV 554
+ + P V+D W+ S PF++L +P + F++ +P + G D W
Sbjct: 311 LACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWF 370
Query: 555 ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTI- 613
+ +G+ GS+ F +V HGLI D +G+KMSK+ GNV+DP D I++FGADALR+ I
Sbjct: 371 NSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIY 430
Query: 614 SLGTAGQDLSLSIERL 629
D +
Sbjct: 431 VSAPPEADRRFGPNLV 446
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 142 bits (359), Expect = 3e-37
Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 3/167 (1%)
Query: 68 EERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRM 125
EE + +W+ + F+ + E +G + + PP G H+GHA + +D+ RY M
Sbjct: 14 EEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTM 73
Query: 126 KGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE-LSRDEFTKRVWEWKEKYGGTITSQ 184
+G G D G+ +L VEK L + + +E + F + E Y +
Sbjct: 74 RGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAF 133
Query: 185 IKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNW 231
+R+ D TL+ ++ + L ++GL+Y+ +V +
Sbjct: 134 TERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPY 180
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 159 bits (402), Expect = 5e-43
Identities = 51/214 (23%), Positives = 84/214 (39%), Gaps = 30/214 (14%)
Query: 438 MPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKY 497
+ + + + +W ISRQ WG +PV+Y + E I+ + + ++
Sbjct: 239 KVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFY--AENGEIIMTKETVNHVADLFAEH 296
Query: 498 GKNV----------------------EIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFK 535
G N+ ++ D++D WF S L +
Sbjct: 297 GSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETR------PE 350
Query: 536 KFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI 595
+P M G D W + + G P+ + HG + D +G+KMSK+LGNVI
Sbjct: 351 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI 410
Query: 596 DPIDTIKEFGADALRFTISLGTAGQDLSLSIERL 629
P +K+ GAD R +S D+ +S E L
Sbjct: 411 VPDQVVKQKGADIARLWVSSTDYLADVRISDEIL 444
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 139 bits (350), Expect = 5e-36
Identities = 60/204 (29%), Positives = 105/204 (51%), Gaps = 16/204 (7%)
Query: 56 KDT--LPKTFDF-------TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGS 104
+ T +PKT DF E +I W+++ + E +G++ F++ PP G+
Sbjct: 4 EKTLLMPKT-DFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGN 62
Query: 105 LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRD 164
LHMGHA+ L+D +VRY M+G ++PG D G+ + + K +G+ R ++S
Sbjct: 63 LHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTK----KGVDRKKMSTA 118
Query: 165 EFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224
EF ++ E+ + +RLG D+ TL + A + F + +KGLIY+
Sbjct: 119 EFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYK 178
Query: 225 GSYMVNWSPNLQTAVSDLEVEYSE 248
G V WSP+ ++++++ E+EY
Sbjct: 179 GKKPVYWSPSSESSLAEAEIEYPH 202
|
| >d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 116 bits (292), Expect = 3e-31
Identities = 60/145 (41%), Positives = 85/145 (58%), Gaps = 4/145 (2%)
Query: 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHV 310
G LY ++Y V G F+ IAT RPET+F D A+AV+P+DE Y +G A +P+T
Sbjct: 1 GKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIP 59
Query: 311 PIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA--GLFRGL 368
+ V+K+FGTG LK++P HD DY + + GL ++V+N +G + RGL
Sbjct: 60 ILADP-AVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGL 118
Query: 369 DRFEARKKLWSDLEETGLAVKKEPH 393
DRFEAR+K E G VK+E +
Sbjct: 119 DRFEARRKAVELFREAGHLVKEEDY 143
|
| >d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 194 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 105 bits (262), Expect = 1e-26
Identities = 37/189 (19%), Positives = 78/189 (41%), Gaps = 2/189 (1%)
Query: 206 SRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSD 265
S ++ AF +KG++ + + W+ T S++ + E Y
Sbjct: 5 SASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIA 64
Query: 266 FLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTG 325
+ ++ + ++ + ++A P R +I+ +V + GTG
Sbjct: 65 EALSDAVAEALDWDKASIKLE-KEYTGKELEWVVAQHPFLD-RESLVINGDHVTTDAGTG 122
Query: 326 VLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETG 385
+ +PGH +DY++ ++ LP+++ ++ G E G F G+ +A K + L E G
Sbjct: 123 CVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKG 182
Query: 386 LAVKKEPHT 394
+K + T
Sbjct: 183 ALLKLDFIT 191
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 98.1 bits (243), Expect = 8e-23
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 18/162 (11%)
Query: 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVE 148
+ +++ P GS+H+GH + D+ VRY RM+G ++ D G L +
Sbjct: 1 AKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 60
Query: 149 KMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRA 208
+ GI ++ + + ++ G + + T E+ +
Sbjct: 61 Q----LGITPEQMIGEMSQEHQTDFA--------------GFNISYDNYHSTHSEENRQL 102
Query: 209 VVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250
+ RL E G I + + P + D V P
Sbjct: 103 SELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVVSGATP 144
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 80.7 bits (198), Expect = 5e-17
Identities = 47/274 (17%), Positives = 85/274 (31%), Gaps = 41/274 (14%)
Query: 377 LWSDLEETGLAVKKEPHTLRVPRSQR--------GGEVIEPLVSKQWFVTMEPLAEKALH 428
++S L+E G + L P G S+ +F + +E
Sbjct: 106 IYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVMRDSEHFFFDLPSFSEMLQA 165
Query: 429 AVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADE 488
G L + K+ + S ++ W ISR + +
Sbjct: 166 WTRSGALQ--EQVANKMQEWFESGLQQWDISRDAPY-FGFEIPNA--------------- 207
Query: 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHD 548
Y D + S G + +KK +
Sbjct: 208 ----------PGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 257
Query: 549 ILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADA 608
+ ++ + +E + S++++HG + G KMSK+ G I + F AD+
Sbjct: 258 DIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTV-NGAKMSKSRGTFIKASTWLNHFDADS 316
Query: 609 LRFTI--SLGTAGQDLSLSIERLTA--NKAFTNK 638
LR+ L + D+ L++E N NK
Sbjct: 317 LRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNK 350
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 93.6 bits (231), Expect = 3e-21
Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 6/221 (2%)
Query: 414 QWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHW-LSNIKDWCISRQLWWGHRIPVWY 472
EK L ER ++ + + + W I
Sbjct: 126 YCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEG 185
Query: 473 IVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPD-VLDTWFSSALWPFSTLGWPDVSA 531
+ + D ++ + + + + D + V WF + L S L +P+
Sbjct: 186 YRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPE--- 242
Query: 532 DDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTL 591
+ + + + A ++ G + H+ + G + GRKMSKTL
Sbjct: 243 GEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTL 302
Query: 592 GNVIDPIDTIKEFGADALRFT-ISLGTAGQDLSLSIERLTA 631
GNV+DP ++++G DALR+ + GQD +S E L
Sbjct: 303 GNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRT 343
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 86.3 bits (212), Expect = 7e-19
Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 18/151 (11%)
Query: 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
F ++ P V H+GHA + D + R+HR+ G T +L GTD G +
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA- 62
Query: 151 LAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210
G + W + T +E+ + V
Sbjct: 63 ---AGEDPKAFVDRVSGRFKRAWDLL--------------GIAYDDFIRTTEERHKKVVQ 105
Query: 211 EAFIRLHEKGLIYQGSYMVNWSPNLQTAVSD 241
+++E G IY G Y + + + ++
Sbjct: 106 LVLKKVYEAGDIYYGEYEGLYCVSCERFYTE 136
|
| >d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 192 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 89.6 bits (221), Expect = 4e-21
Identities = 44/184 (23%), Positives = 68/184 (36%), Gaps = 48/184 (26%)
Query: 255 YIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMT--------- 305
I + V G+ + + TTRP+TLFG L + P+ + +
Sbjct: 6 EILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRK 65
Query: 306 -------------------------YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL 340
G +PI + YV +GTG + P HD DY
Sbjct: 66 TEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEF 125
Query: 341 ARKLGLPILNVMN--------------KDGTLNEVAGLFRGLDRFEARKKLWSDLEETGL 386
ARK GLPI V+ ++ + +G F G + E ++K+ + LEE GL
Sbjct: 126 ARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGL 185
Query: 387 AVKK 390
+
Sbjct: 186 GKGR 189
|
| >d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 179 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 84.6 bits (208), Expect = 1e-19
Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 42/177 (23%)
Query: 255 YIKYRVAGRSDF------LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGR 308
Y+++ + L I TT P TL G+VA AV+P+ + + +G A++
Sbjct: 4 YVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLG 63
Query: 309 H----------------------------------VPIISDKYVDKEFGTGVLKISPGHD 334
++ YV +E GTG++ +P
Sbjct: 64 RKLLGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFG 123
Query: 335 HNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKE 391
D AR GLP+L ++++G L F+GL EA + + DL G K+E
Sbjct: 124 AEDLETARVYGLPLLKTVDEEGKLLV--EPFKGLYFREANRAILRDLRGRGFLFKEE 178
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 79.7 bits (195), Expect = 1e-16
Identities = 39/266 (14%), Positives = 80/266 (30%), Gaps = 38/266 (14%)
Query: 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 437
+ T A + R G I S +++ M+ AE+ +EK
Sbjct: 116 HLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP--W 173
Query: 438 MPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKY 497
P + + +++ I+R L WG +P+ K +
Sbjct: 174 KPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKV------------------ 215
Query: 498 GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTML--ETGHDILFFWVA 555
+Y + + S + F +G P+ + T + G D + F
Sbjct: 216 -----LYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAI 270
Query: 556 RMVMMGIEFTGSV---------PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGA 606
+ + + + + +G+K S + I + + F A
Sbjct: 271 FWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTL-EGKKFSTSRNWAIWVHEFLDVFPA 329
Query: 607 DALRFTI-SLGTAGQDLSLSIERLTA 631
D LR+ + ++ +D S
Sbjct: 330 DYLRYYLTTIMPETRDSDFSFSDFKV 355
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 78.9 bits (193), Expect = 2e-16
Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 19/147 (12%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTL-EDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
++++ P G +H GH L DI VRY R+KG +++ GTD G K
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK- 62
Query: 151 LAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210
EG E+ + + ++ + T +
Sbjct: 63 ---EGRSPREIVDEFHEQIKITFQRAK--------------ISFDFFGRTELPIHYKLSQ 105
Query: 211 EAFIRLHEKGLIYQGSYMVNWSPNLQT 237
E F++ +E G + + + + +
Sbjct: 106 EFFLKAYENGHLVKKVTKQAYCEHDKM 132
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 62.7 bits (151), Expect = 3e-11
Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 13/223 (5%)
Query: 424 EKALHAVEKGELTIMPERFEKIYNHWLSNIKDW---CISRQLWWGHRIPVWYIVGKEEEY 480
+H + P+ + +H I+ + V + V + Y
Sbjct: 93 IAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTY 152
Query: 481 IVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSAL---WPFSTLGWPDVSADDFKKF 537
V D +A + + ++P W S S G
Sbjct: 153 GVLSRQDLDQLQAGARVDVVDD-KRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSA 211
Query: 538 YPTTMLETGHDIL------FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTL 591
L DI F + + + ++H + KMSK+L
Sbjct: 212 MNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSL 271
Query: 592 GNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKA 634
GN D +K + A+ +R+ + G L+ S E L +A
Sbjct: 272 GNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARA 314
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 53.2 bits (126), Expect = 4e-08
Identities = 30/203 (14%), Positives = 55/203 (27%), Gaps = 3/203 (1%)
Query: 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV 470
++ + E EK V+ + + +R E L+ K I L I
Sbjct: 101 YAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAK 160
Query: 471 WYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS 530
+ + + + E ++ ++ + L W
Sbjct: 161 QPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDW 220
Query: 531 ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHG--LIRDSQGRKMS 588
+ G D L + I + + L + Q KMS
Sbjct: 221 PM-RWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMS 279
Query: 589 KTLGNVIDPIDTIKEFGADALRF 611
+ GNVI D + +RF
Sbjct: 280 GSKGNVILLSDLYEVLEPGLVRF 302
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.9 bits (107), Expect = 9e-06
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 5/103 (4%)
Query: 75 WESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134
W K ERG + +G +H+G+ + I+ R KG +
Sbjct: 2 WADYIADKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIH 61
Query: 135 GTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
D K+ + + ++ W
Sbjct: 62 MWDDYDR-----FRKVPRNVPQEWKDYLGMPISEVPDPWGCHE 99
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 674 | |||
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 100.0 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 100.0 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 100.0 | |
| d1wkaa1 | 143 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 100.0 | |
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 100.0 | |
| d1udza_ | 179 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.97 | |
| d1ffya2 | 194 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 99.97 | |
| d1h3na2 | 192 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.96 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 99.89 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 99.77 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 99.69 | |
| d1j09a2 | 305 | Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph | 99.25 | |
| d1nzja_ | 286 | Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c | 98.13 | |
| d1gtra2 | 331 | Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co | 98.07 | |
| d1jila_ | 323 | Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au | 95.58 | |
| d1h3fa1 | 343 | Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi | 95.34 | |
| d1j1ua_ | 306 | Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc | 92.76 | |
| d2ts1a_ | 319 | Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth | 92.45 | |
| d1n3la_ | 339 | Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie | 83.31 | |
| d1r6ta2 | 386 | Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo | 82.55 | |
| d1j1ua_ | 306 | Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc | 80.35 |
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.1e-86 Score=738.47 Aligned_cols=415 Identities=27% Similarity=0.489 Sum_probs=367.5
Q ss_pred CCCCCCCCCCh-HHHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCee
Q 005849 55 NKDTLPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTL 131 (674)
Q Consensus 55 ~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~ 131 (674)
|.-.-+..+|+ ++|++||++|+++++|++.. ++++++|+|++|||||||.|||||+++++++|+++||+||+||+|+
T Consensus 10 p~t~f~~~~~~~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~ 89 (450)
T d1ffya3 10 PKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAP 89 (450)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCC
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHCCCccccccccCCCCcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccc
Confidence 44445778898 89999999999999998743 3456789999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHH
Q 005849 132 WLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVE 211 (674)
Q Consensus 132 ~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~ 211 (674)
+++|||+||+|+|.+ +.+.+.+++++++++|.+.|++++.++.+.+++++++||+++||+++|.|++++|.+.+++
T Consensus 90 ~~~G~D~~G~pie~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~ 165 (450)
T d1ffya3 90 YVPGWDTHGLPIEQA----LTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIR 165 (450)
T ss_dssp CCCEEBCCSHHHHHH----HHHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHH
T ss_pred cccccccCCcHHHHH----HHhhCCccccccHHHHhhhcchhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHH
Confidence 999999999997654 4556889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCch
Q 005849 212 AFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEH 291 (674)
Q Consensus 212 ~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~ 291 (674)
+|.+|+++|+||++.++|+|||.|+|+++++|++
T Consensus 166 ~f~~l~~~G~iy~~~~~v~~~p~~~~~~~~~e~~---------------------------------------------- 199 (450)
T d1ffya3 166 IFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIE---------------------------------------------- 199 (450)
T ss_dssp HHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE----------------------------------------------
T ss_pred HHHHHHHcCCeeccccccccccccCccccccccc----------------------------------------------
Confidence 9999999999999999999999999999987764
Q ss_pred hhhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHH
Q 005849 292 YSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRF 371 (674)
Q Consensus 292 y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~ 371 (674)
T Consensus 200 -------------------------------------------------------------------------------- 199 (450)
T d1ffya3 200 -------------------------------------------------------------------------------- 199 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh
Q 005849 372 EARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS 451 (674)
Q Consensus 372 ~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~ 451 (674)
+|.|+||+.+++.+.++|||+++..+++.+.+.++ .+.+.|+..+.++..|++
T Consensus 200 -------------------------~~~~~r~~~~~~~~~~~qwf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 252 (450)
T d1ffya3 200 -------------------------YPHDWRTKKPVIFRATPQWFASISKVRQDILDAIE--NTNFKVNWGKTRIYNMVR 252 (450)
T ss_dssp -------------------------EEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHH--TSEESSHHHHHHHHHHHH
T ss_pred -------------------------ccccccccCCceeeccccceeccccccccchhhcc--cccccccccceeeecccc
Confidence 25799999999999999999999999999999987 578999999999999999
Q ss_pred cCCCceeecccCCCcccceeeecCCcccEEEeC-ChhHHHHHH-----------------hhhc----CCCcceEecCCe
Q 005849 452 NIKDWCISRQLWWGHRIPVWYIVGKEEEYIVAR-NADEALEKA-----------------HQKY----GKNVEIYQDPDV 509 (674)
Q Consensus 452 ~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~-~~~~~~~~~-----------------~~~~----~~~~~~~~~~dv 509 (674)
+++||||||||+||+|+|+|++.+ ...+... ......... ...+ .+...+.+++||
T Consensus 253 ~~~Dw~iSRqr~WG~piP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 330 (450)
T d1ffya3 253 DRGEWVISRQRVWGVPLPVFYAEN--GEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDI 330 (450)
T ss_dssp HCCCEECEESCSSSCBCCCEECTT--SCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCE
T ss_pred CccchheeeecccccCcceeecCC--CCEecchhhhHHHHHhhhhcCccccccccccccccccccccCCCCCcceeeeee
Confidence 999999999999999999999964 2222221 111111100 0001 123468899999
Q ss_pred eeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccc
Q 005849 510 LDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSK 589 (674)
Q Consensus 510 ld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSK 589 (674)
+|+||+|+++++...+++ +..+||+|++++|+||+++|++++++.++.+.++.||++|++||+++|.+|+||||
T Consensus 331 ld~wfds~~~~~~~~~~~------~~~~~P~d~~~~G~Di~r~w~~~~~~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSK 404 (450)
T d1ffya3 331 MDVWFDSGSSHRGVLETR------PELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSK 404 (450)
T ss_dssp ECHHHHHHTHHHHTTTTS------TTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCS
T ss_pred eccccccccccccccccc------ccccCCCcccccCcchhhHHHHHHHHHHHHhcCCCCcceEEEcceEECCCCCCCCC
Confidence 999999999988876543 44579999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHH
Q 005849 590 TLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKA 634 (674)
Q Consensus 590 S~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~ 634 (674)
|+||+|+|.|++++||+|+|||||+++++++|++|+++.|+++++
T Consensus 405 S~GN~I~p~dii~~yGaDalR~~l~s~~~~~D~~fs~~~l~~~~~ 449 (450)
T d1ffya3 405 SLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD 449 (450)
T ss_dssp SSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHhCcHHHHHHHHcCCCCCCcCcCHHHHHHhhc
Confidence 999999999999999999999999988889999999999988653
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.4e-77 Score=659.47 Aligned_cols=422 Identities=50% Similarity=0.924 Sum_probs=377.8
Q ss_pred CCCCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 58 TLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 58 ~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
+.++.||+ ++|++||++|++++.|... ++++++|+|++|||||||+|||||+++++++|+++||+||+||+|++++|+
T Consensus 2 ~~~~~~~~~~~e~~~~~~w~~~~~~~~~-~~~~~~f~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~g~ 80 (425)
T d1ivsa4 2 DLPKAYDPKSVEPKWAEKWAKNPFVANP-KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGT 80 (425)
T ss_dssp CCCSSCCGGGTHHHHHHHHHSSCCCCCT-TCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEE
T ss_pred CCCCCCChHHHHHHHHHHHHHCCcccCC-CCCCCcEEEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecCcc
Confidence 45899999 7999999999999987754 456888999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHH
Q 005849 137 DHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (674)
Q Consensus 137 D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (674)
|+||++++.++++.+..+|..+.+++++.+.+.+..++.++.+.|++++++||+++||+.++.|+++.|.+.++++|.+|
T Consensus 81 D~hG~~i~~~aek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~~~~~~~~l 160 (425)
T d1ivsa4 81 DHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRY 160 (425)
T ss_dssp BCCTHHHHHHHHHHHHTTTCCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHhhcccCCChHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhhhHHHHhhh
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhcc
Q 005849 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFI 296 (674)
Q Consensus 217 ~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~ 296 (674)
.++|++|++.++++|||.|+++|++.++
T Consensus 161 ~~~G~iy~~~~~~~~c~~~~~~l~~~~~---------------------------------------------------- 188 (425)
T d1ivsa4 161 YHEGLAYRAPRLVNWCPRCETTLSDLEV---------------------------------------------------- 188 (425)
T ss_dssp HTTSSEEEECCEEEEETTTTEECCGGGE----------------------------------------------------
T ss_pred hccCcccccceeeccccccccccccccc----------------------------------------------------
Confidence 9999999999999999999999987433
Q ss_pred CcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHH
Q 005849 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKK 376 (674)
Q Consensus 297 G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~ 376 (674)
T Consensus 189 -------------------------------------------------------------------------------- 188 (425)
T d1ivsa4 189 -------------------------------------------------------------------------------- 188 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCc
Q 005849 377 LWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDW 456 (674)
Q Consensus 377 i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW 456 (674)
+.|.+|+...+....+|||+++++..+.+....+.+...+.|+..+..+..|++.++||
T Consensus 189 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~l~d~ 247 (425)
T d1ivsa4 189 ---------------------ETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDW 247 (425)
T ss_dssp ---------------------EEETTTCSBCEEEECCEEEECHHHHHHHHHHHHHHTCCEESSSTHHHHHHHHHHTCCCE
T ss_pred ---------------------ccccccCcccccccccchhhccchhhccchhhhhcCCcceeccccceeeehhhhhcCcc
Confidence 24667888899999999999999999999999988899999999999999999999999
Q ss_pred eeecccCCCcccceeeecCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhh
Q 005849 457 CISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536 (674)
Q Consensus 457 ~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~ 536 (674)
+|||++.||+++|.|++.. .....+...............+....+....||+++||+|++|+++..+++.+. ..+..
T Consensus 248 ~isr~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~da~~~~~~~~~~~~~~-~~~~~ 325 (425)
T d1ivsa4 248 NISRQLWWGHQIPAWYCED-CQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEET-EDLKA 325 (425)
T ss_dssp ECEECCSSSCCCCCEEETT-TCCEECCCGGGTTCCCCSCTTTCCSCEEECCCEECHHHHHTSCTTTTTTTTTTC-SHHHH
T ss_pred eeecccccCCccceeeccC-cceeecCccccccccccccccccCccccccCccccccccchhHHHHhhCCCcCh-HHHhC
Confidence 9999999999999998865 222222221111000000011223456788999999999999999999998876 78899
Q ss_pred cCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcC
Q 005849 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 616 (674)
Q Consensus 537 ~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~ 616 (674)
++|.|++++|+||+++|+...++++.++.++.||+++++||++++.+|+|||||+||+|+++|++++||+|+|||||++.
T Consensus 326 ~~p~di~~~G~Di~~~h~~~~~a~~~~~~~~~p~~~v~~hg~~L~~~G~KMSKS~Gn~I~~~e~l~~~g~D~lR~~L~~~ 405 (425)
T d1ivsa4 326 FYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYL 405 (425)
T ss_dssp SCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSSBCBTTTTBCCCHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCceEEEEEehhhhHHHHHHHHHHHHhcCCCccceEEEcceEECCCCCCcCCCCCCCcCHHHHHHHcCchHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC-CCccccCHHHHHHHHHH
Q 005849 617 TA-GQDLSLSIERLTANKAF 635 (674)
Q Consensus 617 ~~-~~d~~fs~~~l~~~~~~ 635 (674)
++ .+|++|+++.++++++|
T Consensus 406 ~~~~~d~dF~~~~~~~~~nf 425 (425)
T d1ivsa4 406 ATGGQDIRLDLRWLEMARNF 425 (425)
T ss_dssp CCTTCCEECCHHHHHHHHHH
T ss_pred CCCCCCCccCHHHhhhccCc
Confidence 77 89999999999887775
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.7e-74 Score=637.86 Aligned_cols=421 Identities=27% Similarity=0.493 Sum_probs=362.3
Q ss_pred CCCCCCCh-HHHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 005849 58 TLPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (674)
Q Consensus 58 ~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~ 134 (674)
..+.+.|+ .+|++||++|+++++|++..+ +++++|+|++|||||||+|||||+++++++||++||+||+||+|++++
T Consensus 3 ~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~v~ 82 (452)
T d1ilea3 3 KEVGEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRA 82 (452)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEE
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCccCCccccCCCCCEEEecCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCCceeccC
Confidence 34577898 899999999999999987543 346889999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHcCCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHH
Q 005849 135 GTDHAGIATQLVVEKMLAAEGIK----RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210 (674)
Q Consensus 135 G~D~~Gl~~e~~ve~~~~~~g~~----~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~ 210 (674)
|+|+||+||+.++++.. +.. ......++|.+.|++++.++.+.+.++++++|++.||.+++.|+++.|.+.++
T Consensus 83 G~D~hG~~i~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~ 159 (452)
T d1ilea3 83 GWDTHGLPVELEVEKKL---GLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIW 159 (452)
T ss_dssp EECCCHHHHHHHHHHHT---TCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHhh---ccccccchhHHHHHHHHHHHhhHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHH
Confidence 99999999887765431 211 12335578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCc
Q 005849 211 EAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDE 290 (674)
Q Consensus 211 ~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~ 290 (674)
++|.+|+++|+||.+...++||+.|++.+++.+++
T Consensus 160 ~~f~~l~~~G~iy~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 194 (452)
T d1ilea3 160 WSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVA--------------------------------------------- 194 (452)
T ss_dssp HHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHH---------------------------------------------
T ss_pred HHHHHHHhcCCcccccccchhhccccccccccccc---------------------------------------------
Confidence 99999999999999999999999999998875442
Q ss_pred hhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCH
Q 005849 291 HYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDR 370 (674)
Q Consensus 291 ~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~ 370 (674)
T Consensus 195 -------------------------------------------------------------------------------- 194 (452)
T d1ilea3 195 -------------------------------------------------------------------------------- 194 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhH-HHHHHHH
Q 005849 371 FEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHW 449 (674)
Q Consensus 371 ~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~-~~~~~~~ 449 (674)
+..|+|+|||++++++.+.|||++++.+++.+.+.+.. ..+.|+.. ..++..|
T Consensus 195 ------------------------~~~p~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~ 248 (452)
T d1ilea3 195 ------------------------LGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQE--IHWVPPHIKEGRYGEW 248 (452)
T ss_dssp ------------------------HTEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHH--SEESSGGGTTTTTHHH
T ss_pred ------------------------ccCCCccCcCCceEEeeccchhhhhccchhhhhhhhcc--cccCcchhhhceeeee
Confidence 23478999999999999999999999999999988874 44667765 5577889
Q ss_pred HhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHHHHHhhh------------------cCCCcceEecCCeee
Q 005849 450 LSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQK------------------YGKNVEIYQDPDVLD 511 (674)
Q Consensus 450 l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~dvld 511 (674)
+++++|||||||++||+|+|+|.++. .....+.............. ......+.+..++++
T Consensus 249 ~~~l~dw~IsR~~~wg~~ip~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 327 (452)
T d1ilea3 249 LKNLVDWALSRNRYWGTPLPIWVCQA-CGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVID 327 (452)
T ss_dssp HHTCCCEECCBCCSSSCBCCEEEESS-SSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCC
T ss_pred ccCCccceeecccccccCCccccccc-cCcccccchhhhhhhhhccccCccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999976 23333333333222211110 112235678899999
Q ss_pred eeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccC
Q 005849 512 TWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTL 591 (674)
Q Consensus 512 ~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~ 591 (674)
+|++|+.++....+++.+....+..++|+|+++.|+|++++|+.++++.++.+.+..||+++++||++++.+|+|||||+
T Consensus 328 ~w~~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~d~~~~~fh~l~~~~~l~~~~~~~~~v~~hg~iL~~~G~KMSKS~ 407 (452)
T d1ilea3 328 VWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSK 407 (452)
T ss_dssp HHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTT
T ss_pred cccccccchhhhccCccchhhhcccCCcchhheecCceechhhHHHHHhHHHHcCCCCCCeEEEeeEEECCCCcccCCCC
Confidence 99999999999999888776777889999999999999999999999988888899999999999999999999999999
Q ss_pred CCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHH
Q 005849 592 GNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANK 633 (674)
Q Consensus 592 gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~ 633 (674)
||+|+|.|++++||+|++||||++.++ ++|++|+++.|++..
T Consensus 408 gn~I~~~dll~~ygaD~lR~yl~~~~~~~~d~~Fs~~~~~e~~ 450 (452)
T d1ilea3 408 GNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETV 450 (452)
T ss_dssp TCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHH
T ss_pred CCCcCHHHHHHHcCcHHHHHHHHhcCCCCCCCCcCHHHHhHHh
Confidence 999999999999999999999998766 999999999998754
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.6e-67 Score=585.87 Aligned_cols=403 Identities=23% Similarity=0.371 Sum_probs=319.3
Q ss_pred CCCCh-HHHHHHHHHHHhCCCCCCCC-CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 005849 61 KTFDF-TSEERIYNWWESQGYFKPNF-ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (674)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~-~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~ 138 (674)
++||+ ++|++||++|+++++|+... +.++++|+|++||||+||.||||||++++++|+++||+||+|++|+|++||||
T Consensus 2 ~~Y~p~~iE~~~~~~W~~~~~~~~~~~~~~~~~~~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~ 81 (494)
T d1h3na3 2 EKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDA 81 (494)
T ss_dssp CCCCCTTHHHHHHHHHHHHTTTCCCSSCCTTCEEEEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCccccCCCCeEEEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCc
Confidence 45999 89999999999999998753 44567899999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHH
Q 005849 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (674)
Q Consensus 139 ~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 218 (674)
||+|||.+|++ .+++ |++|++++...+++++++||+++||+++|+|+|++|.+.++++|.+|++
T Consensus 82 ~G~~~e~~~~k----~~~~------------~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~d~~~~~~~~~~f~~l~~ 145 (494)
T d1h3na3 82 FGLPAENAALK----FGVH------------PKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWE 145 (494)
T ss_dssp SSHHHHHHHHH----TTCC------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH----hCCC------------hHHHHHHHHHHhHHHHHhcCcccCCCCceecCCccccchHHHHHHHhhh
Confidence 99999888765 2333 5688999999999999999999999999999999999999999999999
Q ss_pred cCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCc
Q 005849 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298 (674)
Q Consensus 219 kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~ 298 (674)
+|+||++.++|+|||.|+|+|||+||+...
T Consensus 146 ~g~iy~~~~~~~~~~~~~t~l~~~ev~~~~-------------------------------------------------- 175 (494)
T d1h3na3 146 KGLAYRAKGLVNWCPKCQTVLANEQVVEGR-------------------------------------------------- 175 (494)
T ss_dssp TTCEEEEEEEEEEETTTTEEECGGGEETTE--------------------------------------------------
T ss_pred CCcEEeeeEEEEeecCccceecchhcccCc--------------------------------------------------
Confidence 999999999999999999999999984210
Q ss_pred EEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHH
Q 005849 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLW 378 (674)
Q Consensus 299 ~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~ 378 (674)
T Consensus 176 -------------------------------------------------------------------------------- 175 (494)
T d1h3na3 176 -------------------------------------------------------------------------------- 175 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCcee
Q 005849 379 SDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCI 458 (674)
Q Consensus 379 ~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~i 458 (674)
.|..++.++++...+|||++++..++.+...+. ....|+..+.....|++++.||+|
T Consensus 176 --------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~l~d~~I 232 (494)
T d1h3na3 176 --------------------CWRHEDTPVEKRELEQWYLRITAYAERLLKDLE---GLNWPEKVKAMQRAWIGRLRDWLI 232 (494)
T ss_dssp --------------------ESSCTTSBCEEEEEEEEEECGGGGHHHHHHTTT---TCBSCHHHHHHHHHHHCSCCCEEC
T ss_pred --------------------cccccCceEEeeccCchhhhhhccccccccccc---cccccccccccccccccccccccc
Confidence 122345678888999999999999988887764 445678889999999999999999
Q ss_pred ecccCCCcccceeeecCCcccEE--------EeCChhHH----------HHHHh---h-hc-CCCcceEecCCeeeeecc
Q 005849 459 SRQLWWGHRIPVWYIVGKEEEYI--------VARNADEA----------LEKAH---Q-KY-GKNVEIYQDPDVLDTWFS 515 (674)
Q Consensus 459 SRq~~WG~piP~~~~~~~~~~~~--------~~~~~~~~----------~~~~~---~-~~-~~~~~~~~~~dvld~Wfd 515 (674)
||++.||+++|++++... .... ......+. +.... . .+ .......++.+++++||+
T Consensus 233 sr~~~~~~~i~i~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~ 311 (494)
T d1h3na3 233 SRQRYWGTPIPMVHCEAC-GVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFD 311 (494)
T ss_dssp EESCSSSEECCEEEETTT-EEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHH
T ss_pred ccccccccceEEEeeccc-eeecccccchhcccccccccccCCCcCCChhHhCcceeeeecccCCCceEEeceeccccee
Confidence 999999999999998542 1110 00000000 00000 0 01 223456788999999999
Q ss_pred CCccchhccCCCCCC----hhhhhhcCCcceeEEeehhhhhHHHHH--HHHhhh----hcCCCCcceeEe----------
Q 005849 516 SALWPFSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARM--VMMGIE----FTGSVPFSHVYL---------- 575 (674)
Q Consensus 516 s~~~~~~~~~~~~~~----~~~f~~~~P~d~~~~G~Dii~~w~~~~--~~~~~~----~~~~~Pf~~v~~---------- 575 (674)
+..++.....+.... ...+..++|+|.+..|.++...|.... ...... .....||++++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~G~v~~~~~~ 391 (494)
T d1h3na3 312 SSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDF 391 (494)
T ss_dssp TTSHHHHTTSTTCSSSSSCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEE
T ss_pred ecchhhhhcccccccccccccccccccCceecccccceeeeeeecccchhhhhhcccccccchhcccccccCcEecCccc
Confidence 998776665544332 345667889999999977654332211 111111 112345555554
Q ss_pred -------------------------------------------eeeEeCCCCccccccCCCccChhhHHhhhChhHHHHH
Q 005849 576 -------------------------------------------HGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFT 612 (674)
Q Consensus 576 -------------------------------------------hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~ 612 (674)
||+++|.+|+|||||+||||+|.++|++||||+||||
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~d~~g~KMSKSlGNVIdP~~iI~~YGADalRl~ 471 (494)
T d1h3na3 392 GPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARIT 471 (494)
T ss_dssp EEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECCTTTTCCCBHHHHHHHSCHHHHHHH
T ss_pred ccccccccccccCCcceeeeeccccccchhhhhcccccccccCCccEEeCCceeCCCCCCCcCCHHHHHHHhCHHHHHHH
Confidence 4556666788999999999999999999999999999
Q ss_pred HhcCCC-CCccccCHHHHHHHH
Q 005849 613 ISLGTA-GQDLSLSIERLTANK 633 (674)
Q Consensus 613 l~~~~~-~~d~~fs~~~l~~~~ 633 (674)
|++.++ ++|++||++.++++.
T Consensus 472 ll~~s~~g~di~~s~~~ieg~~ 493 (494)
T d1h3na3 472 ILFAAPPENEMVWTEEGVQGAW 493 (494)
T ss_dssp HHHHSCTTSCEEECHHHHHHHH
T ss_pred HHhcCCcccCCCcChhcCeecc
Confidence 998776 999999999999854
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=3.4e-55 Score=469.05 Aligned_cols=334 Identities=19% Similarity=0.230 Sum_probs=273.6
Q ss_pred CCEEEeCCCCCCCCCCCchhhHH-HHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMF-VTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~-~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
.+|+|+.|||||||+|||||+++ ++.+|+++||+||+||+|++++|+|+||++++.+ +.+.|++++
T Consensus 2 ~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~----A~~~g~~~~--------- 68 (361)
T d1rqga2 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFR----ALKEGRSPR--------- 68 (361)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHH----HHHHTCCHH---------
T ss_pred ceEEEecCCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHH----HHHcCCCHH---------
Confidence 47999999999999999999885 7889999999999999999999999999996544 456688876
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
++++.+...+.+++..+++.++ ..+.|.++.+...++.++..++++|++|++...++||+.|+++++
T Consensus 69 ---~~~~~~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 135 (361)
T d1rqga2 69 ---EIVDEFHEQIKITFQRAKISFD--FFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLP-------- 135 (361)
T ss_dssp ---HHHHHHHHHHHHHHHHHTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCC--------
T ss_pred ---HHHHHHHHhhcccccccccccc--cccccccchhhhhhhhhhhhccccCceeeeeeeeecccccceecc--------
Confidence 4567888889999999987655 455699999999999999999999999999999999997654432
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
T Consensus 136 -------------------------------------------------------------------------------- 135 (361)
T d1rqga2 136 -------------------------------------------------------------------------------- 135 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
+.|++||.+++
T Consensus 136 ---------------------------------------------------------------------~~~~~~g~~~~ 146 (361)
T d1rqga2 136 ---------------------------------------------------------------------DRFAICGRPIS 146 (361)
T ss_dssp ---------------------------------------------------------------------GGGTTTCCBCE
T ss_pred ---------------------------------------------------------------------cccccCCCccc
Confidence 35788999999
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhH
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADE 488 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~ 488 (674)
++..+|||++++.+++++++.+. ...+.|+..+.....+.+++.|||||||++||+++|+|.+..
T Consensus 147 ~~~~~~~f~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~isr~~~wg~~~p~~~~~~------------- 211 (361)
T d1rqga2 147 FRDSAHYYIKMQDFAERLKRWIE--KQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDM------------- 211 (361)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHH--SSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSS-------------
T ss_pred ccccceEEEecchhhhhhhhccc--ccccccchhhhhhhccccccccccccccccccccCccccccC-------------
Confidence 99999999999999999999887 467788777777766668899999999999999999998654
Q ss_pred HHHHHhhhcCCCcceEecCCeeeeeccCCccchhc-------cCCCCCChhhhhh--cCCcceeEEeehhhhhHHHHHHH
Q 005849 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFST-------LGWPDVSADDFKK--FYPTTMLETGHDILFFWVARMVM 559 (674)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~-------~~~~~~~~~~f~~--~~P~d~~~~G~Dii~~w~~~~~~ 559 (674)
...++++|+++...+.+. .++..+....... ..+.+++..|.|+.++|.....+
T Consensus 212 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~a 274 (361)
T d1rqga2 212 -----------------KGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPA 274 (361)
T ss_dssp -----------------TTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHH
T ss_pred -----------------CCeEEEeecccccccccccccCcccCCchhHHHHhhhhccCCcceEEeccccccccchhhHHH
Confidence 134666777766544332 2333322111111 23567899999999998877766
Q ss_pred HhhhhcC---------CCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHH
Q 005849 560 MGIEFTG---------SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERL 629 (674)
Q Consensus 560 ~~~~~~~---------~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l 629 (674)
+..+... ..+++++++||++. .+|+|||||+||+|+|+|++++||+|+|||||++..+ ++|++||++.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~-~~G~KMSKSlGN~I~~~d~i~~yg~D~lR~~l~~~~p~~~d~dfs~~~~ 353 (361)
T d1rqga2 275 FLMAYGKYKDEEVEAEWNLPYDIPANEYLT-LEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDF 353 (361)
T ss_dssp HHHTTCCBCSSSCCBCBCCCSBCCEECCEE-ETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHH
T ss_pred HHHHhhccccccccccCCCCCEEEEeeeEE-eCCEecCCCCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCCCCCCCHHHH
Confidence 6555432 12347889999997 6799999999999999999999999999999999888 99999999998
Q ss_pred HH
Q 005849 630 TA 631 (674)
Q Consensus 630 ~~ 631 (674)
..
T Consensus 354 ~~ 355 (361)
T d1rqga2 354 KV 355 (361)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-54 Score=461.40 Aligned_cols=330 Identities=20% Similarity=0.325 Sum_probs=265.1
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
++|+|+.|||||||+|||||+|+++++|+++||+|++||+|.+++|+|+||.+++. .+.++|++++
T Consensus 2 ~~~~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~----~a~~~g~~~~---------- 67 (350)
T d1pfva2 2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIML----KAQQLGITPE---------- 67 (350)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHH----HHHHHTSCHH----------
T ss_pred CeEEEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHH----HHHHcCCCHH----------
Confidence 68999999999999999999999999999999999999999999999999998544 4556788876
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCC
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
+.++++...+.++++.||| ||...+.|.++.+.+.+++++.+|.++|++|++...++|||.|+++|+|.++
T Consensus 68 --~~~~~~~~~~~~~~~~l~i--~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~----- 138 (350)
T d1pfva2 68 --QMIGEMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFV----- 138 (350)
T ss_dssp --HHHHHHHHHHHHHHHHTTC--CCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGT-----
T ss_pred --HHHHhHHHHHHHHHHHcCC--CcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCcee-----
Confidence 4567888889999999997 4556677999999999999999999999999999999999999999887322
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
T Consensus 139 -------------------------------------------------------------------------------- 138 (350)
T d1pfva2 139 -------------------------------------------------------------------------------- 138 (350)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
.||.+++.
T Consensus 139 ------------------------------------------------------------------------~~g~~~~~ 146 (350)
T d1pfva2 139 ------------------------------------------------------------------------VSGATPVM 146 (350)
T ss_dssp ------------------------------------------------------------------------TTCCCCEE
T ss_pred ------------------------------------------------------------------------ccCCCccc
Confidence 14556677
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeeccc-CCCcccceeeecCCcccEEEeCChhH
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNADE 488 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~-~WG~piP~~~~~~~~~~~~~~~~~~~ 488 (674)
+.++|||++++++++.+.+.++.+. +.|+........+.++++|||+||++ +||.++|.
T Consensus 147 ~~~~~~f~~l~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~------------------ 206 (350)
T d1pfva2 147 RDSEHFFFDLPSFSEMLQAWTRSGA--LQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPN------------------ 206 (350)
T ss_dssp EEEEEEEECGGGGHHHHHHHHTTSC--SCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTT------------------
T ss_pred eecchheeehHHHHHHHHHHhhcCC--CchhhHHHHHHHhhccCCccccccccccCCccccC------------------
Confidence 8899999999999999999887543 33433444444555889999999998 55777662
Q ss_pred HHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCC---CCChhhhhhcC----C-cceeEEeehhhhhHHHHHHHH
Q 005849 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWP---DVSADDFKKFY----P-TTMLETGHDILFFWVARMVMM 560 (674)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~---~~~~~~f~~~~----P-~d~~~~G~Dii~~w~~~~~~~ 560 (674)
.+.+++++|+++...+....... ......|..++ + .++++.|+|++++|....+++
T Consensus 207 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~G~D~~~~h~~~~~~~ 270 (350)
T d1pfva2 207 ----------------APGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAM 270 (350)
T ss_dssp ----------------CTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHH
T ss_pred ----------------CCCcccccccccccchhhhhhccccccccchhhhhccccCCCcceeeccchhhHHHHHhhHHHH
Confidence 12457777887766554432111 00112233322 2 237899999999998888887
Q ss_pred hhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcC-CC-CCccccCHHHHHHH
Q 005849 561 GIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG-TA-GQDLSLSIERLTAN 632 (674)
Q Consensus 561 ~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~-~~-~~d~~fs~~~l~~~ 632 (674)
..+.. ..|+.++++||+++ .+|+|||||+||+|+|.|++++||+|+|||||++. +. .+|++||++.|.+.
T Consensus 271 ~~a~~-~~~~~~~~~~g~l~-~~G~KMSKS~GN~i~~~dll~~~g~D~lR~~l~s~~~~~~~d~dfs~~~~~~~ 342 (350)
T d1pfva2 271 LEGSN-FRKPSNLFVHGYVT-VNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQR 342 (350)
T ss_dssp HHHTT-BCCCSEEEEECCEE-ETTBSCCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHH
T ss_pred hhhcC-CCccceEEecccEE-ECCeEccCcCCCCCCHHHHHHHCCHHHHHHHHHhhCCCCCCCCCCCHHHHHHH
Confidence 77664 45678999999998 79999999999999999999999999999999975 44 67899999998764
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.9e-49 Score=417.79 Aligned_cols=337 Identities=26% Similarity=0.391 Sum_probs=278.5
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
+++|+|++|||||||+|||||+|+++++|+++||+|++||+|.+++|+|++|.+++ ..+.++|++++
T Consensus 2 ~~~~~~~~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~----~~a~~~g~~~~--------- 68 (348)
T d2d5ba2 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVY----RAAQAAGEDPK--------- 68 (348)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHH----HHHHHHTSCHH---------
T ss_pred CCCEEEecCCCCCCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHH----HHHHHcCCCHH---------
Confidence 46799999999999999999999999999999999999999999999999999854 44566688876
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
+++..+...+++.++.+|+..|. .+.+..+.+...+++++.++.++|++|++...+.||+.|++++++.++..
T Consensus 69 ---~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 141 (348)
T d2d5ba2 69 ---AFVDRVSGRFKRAWDLLGIAYDD--FIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVE-- 141 (348)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBT--
T ss_pred ---HhhhhHHHHHHHHHHhcCccccc--eeecccchhhHHHHHHHHHHHhhCccccccccccccccccceeccccccc--
Confidence 45677888899999999998872 23378888999999999999999999999999999999988877543311
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
T Consensus 142 -------------------------------------------------------------------------------- 141 (348)
T d2d5ba2 142 -------------------------------------------------------------------------------- 141 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
+.|+.+|..++
T Consensus 142 ---------------------------------------------------------------------~~~~~~~~~~~ 152 (348)
T d2d5ba2 142 ---------------------------------------------------------------------GLCPIHGRPVE 152 (348)
T ss_dssp ---------------------------------------------------------------------TBCTTTCSBCE
T ss_pred ---------------------------------------------------------------------cccccCCCceE
Confidence 23444566677
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHH-hcCCCc---eeecccCCCcccceeeecCCcccEEEeC
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL-SNIKDW---CISRQLWWGHRIPVWYIVGKEEEYIVAR 484 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l-~~l~DW---~iSRq~~WG~piP~~~~~~~~~~~~~~~ 484 (674)
.....+++.+++.+.+.+.+..........+...+.....|. ..+.|| ..+++..||++.|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~p~~------------- 219 (348)
T d2d5ba2 153 RRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWD------------- 219 (348)
T ss_dssp EEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTE-------------
T ss_pred EecccccccchHhhhhhHHHhhhccccccccccccccccccccccccccccccccccCCCCcccccC-------------
Confidence 777888899988888888777766555566655555555555 445554 556677899998852
Q ss_pred ChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhh
Q 005849 485 NADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEF 564 (674)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~ 564 (674)
+.+++++||++.+++++..+++.. ..+..+.+.++++.|+|+..+|.....+...+
T Consensus 220 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~- 275 (348)
T d2d5ba2 220 ---------------------ENHVTFVWFDALLNYVSALDYPEG--EAYRTFWPHAWHLIGKDILKPHAVFWPTMLKA- 275 (348)
T ss_dssp ---------------------EEEEECHHHHHHTHHHHTTTTTTC--HHHHHHGGGEEEEEEGGGHHHHHTHHHHHHHH-
T ss_pred ---------------------CcccccchhccchhhhhhhcCCch--hhhccccchheeeehhhccchhhhhhhhhccc-
Confidence 247899999999999998887654 57777889999999999998887766665544
Q ss_pred cCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH
Q 005849 565 TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA 631 (674)
Q Consensus 565 ~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~ 631 (674)
.+..|++++++||++++.+|+|||||+||+|++.|++++||+|+|||||++..+ ++|++||++.|.+
T Consensus 276 ~~~~~~~~v~~~~~~l~~~G~KMSKS~Gn~i~~~ell~~~g~D~lR~~l~~~~p~~~d~dFs~~~~~~ 343 (348)
T d2d5ba2 276 AGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRT 343 (348)
T ss_dssp HTCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHH
T ss_pred cccCCCCEEEeCceEEcccCCCCcCCCCcccCHHHHHHHCCcHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence 356688999999999999999999999999999999999999999999998666 8999999999876
|
| >d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-37 Score=288.51 Aligned_cols=141 Identities=45% Similarity=0.786 Sum_probs=133.9
Q ss_pred CeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeC
Q 005849 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (674)
Q Consensus 251 ~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~ 330 (674)
|.++||+|++++ +.+|+|||||||||+||+||+|||++++++.|+|+.+.+|++ ++++||+.++||++++|||+||+|
T Consensus 1 g~l~yvkf~~~~-~~~i~i~TTrP~Tl~g~~avav~P~d~~~~~l~g~~~~~p~~-~~~vpi~~~~~V~~~~GTG~V~~a 78 (143)
T d1wkaa1 1 GKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLT-EVWIPILADPAVEKDFGTGALKVT 78 (143)
T ss_dssp CEEEEEEEEBTT-SCEEEEEESCGGGGGGCCEEEECTTCTTTGGGTTCEEECTTS-SCEEEEEECTTCCTTSTTSEEEEC
T ss_pred CeEEEEEEEeCC-CCEEEEEECCcchhcCceEEEEeccccccccccccceeeccc-ceeeceeecccccccCCCCeEEEe
Confidence 568999999987 469999999999999999999999999999999999999995 899999999999999999999999
Q ss_pred CCCChhhHHHHHHhCCCeeeeccCCCcccccc--cccCCCCHHHHHHHHHHHHHHcCCccccccc
Q 005849 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVA--GLFRGLDRFEARKKLWSDLEETGLAVKKEPH 393 (674)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~--g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~ 393 (674)
|+||++||++|++||||+++++|++|+++++. +.|+|+++++||++|+++|+++|++++.++|
T Consensus 79 PaHd~~D~~~~~k~~L~~~~~i~~~G~~~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~gll~k~e~y 143 (143)
T d1wkaa1 79 PAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 143 (143)
T ss_dssp TTTCHHHHHHHHHHTCCCCCSBCTTSBBCSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCChHHHHHHHhhcccccccccccceEeeecchHhhCCCcHHHHHHHHHHHHHhCCCEEeeecC
Confidence 99999999999999999999999999999753 6899999999999999999999999998754
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.7e-33 Score=291.85 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=99.3
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHH
Q 005849 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFT 167 (674)
Q Consensus 88 ~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~ 167 (674)
++.++++| | |||||++||||+|+++++|+++||+|+.|++|.++.|+|+||.+++ ..+++.|.+++
T Consensus 21 ~~~~~yv~-G-ptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~----~~a~~~~~~~~-------- 86 (315)
T d1li5a2 21 GEVGMYVC-G-ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKII----KRANENGESFV-------- 86 (315)
T ss_dssp TEEEEEEC-C-CBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHH----HHHHHTTCCHH--------
T ss_pred CeEEEEec-C-CcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHH----HHHhhhhhccc--------
Confidence 44456664 7 6999999999999999999999999999999999999999998854 44566788776
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceecc
Q 005849 168 KRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWS 232 (674)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~ 232 (674)
++++++...+.+++.++++..+- +.+...++...+...+.+|.++|.+|.......||
T Consensus 87 ----e~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 144 (315)
T d1li5a2 87 ----AMVDRMIAEMHKDFDALNILRPD---MEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMF 144 (315)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCCCCS---BCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEE
T ss_pred ----cccccchhhhhhhHHhcCCCCCc---EEEecchhhhhhhhHHHHhhccCceeccccceEEe
Confidence 45577778889999999997762 22334466777888899999999999876654443
|
| >d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=2.5e-32 Score=263.24 Aligned_cols=138 Identities=30% Similarity=0.456 Sum_probs=126.7
Q ss_pred eeEEEEEeecC------CCceEEEeecCCCcccCCceEEeCCCCchh--------------------------------h
Q 005849 252 TLYYIKYRVAG------RSDFLTIATTRPETLFGDVALAVNPQDEHY--------------------------------S 293 (674)
Q Consensus 252 ~~~~~kf~~~~------~~~~l~v~Tt~Petl~~~~av~v~p~~~~y--------------------------------~ 293 (674)
|++|++|++.+ .+.+++|||||||||+||+||+|||+.++. +
T Consensus 1 Psi~V~F~l~~~~~~~~~~~~l~iwTTtPwTLp~n~avav~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 80 (179)
T d1udza_ 1 PSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGK 80 (179)
T ss_dssp CEEEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCTTSCEEEEEEGG
T ss_pred CeEEEEEEecCCccccCCCceEEEEeCCcchhhcceeeecCCCCcceEEEEeechhhhhhhccceeeeeeeeEEEEEecc
Confidence 58999999976 467999999999999999999999998731 3
Q ss_pred hccCcEEecCCC--CCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHH
Q 005849 294 QFIGMMAIVPMT--YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRF 371 (674)
Q Consensus 294 ~l~G~~~~~P~~--~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~ 371 (674)
+|.|..+.||+. .++.+||+.++||+++.|||+||+||+||++||++|+++|||+++++|++|+++ .+.|.|+.++
T Consensus 81 ~l~g~~~~~p~~~~~~~~~pv~~ad~V~~~~GTG~Vh~aPahg~~D~~~~~k~gl~i~~~Vd~~G~~~--~~~~~Gl~v~ 158 (179)
T d1udza_ 81 ALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLL--VEPFKGLYFR 158 (179)
T ss_dssp GGTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSEEEECGGGCHHHHHHHHHTTCCCCCCBCTTSBBC--STTCTTCBHH
T ss_pred cceeeEEEeecccccccceeEEeccccCccccCcceeeeccCCHHHHHHHHhcCCCccccccCcceec--ccccCCCCHH
Confidence 688999999984 356789999999999999999999999999999999999999999999999997 5689999999
Q ss_pred HHHHHHHHHHHHcCCccccc
Q 005849 372 EARKKLWSDLEETGLAVKKE 391 (674)
Q Consensus 372 ~ar~~i~~~L~~~g~~~~~~ 391 (674)
||++.|++.|+++|++++.|
T Consensus 159 dA~~~Ii~~L~~~g~L~~~e 178 (179)
T d1udza_ 159 EANRAILRDLRGRGFLFKEE 178 (179)
T ss_dssp HHHHHHHHHHHHHTCEEEEE
T ss_pred HhHHHHHHHHHHCCCEEeec
Confidence 99999999999999999875
|
| >d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=1.5e-33 Score=275.90 Aligned_cols=147 Identities=26% Similarity=0.407 Sum_probs=135.7
Q ss_pred CCeeEEEEEeecC------CCceEEEeecCCCcccCCceEEeCCCCchh-------------------------------
Q 005849 250 PGTLYYIKYRVAG------RSDFLTIATTRPETLFGDVALAVNPQDEHY------------------------------- 292 (674)
Q Consensus 250 ~~~~~~~kf~~~~------~~~~l~v~Tt~Petl~~~~av~v~p~~~~y------------------------------- 292 (674)
.++++|++|++.+ .+.+++|||||||||+||+||+|||+.++.
T Consensus 4 ~s~sv~v~F~i~~~~~~~~~~~~l~iwTTtPwTlp~n~alav~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (194)
T d1ffya2 4 RSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIK 83 (194)
T ss_dssp EEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCC
T ss_pred cCCEEEEEEEEcCCCCccCCCCeEEEecCCCchhhhhhheeeCCccccceeeeecchhhhhhhhhhhhhhhhhhcceeee
Confidence 4678999999975 368999999999999999999999998631
Q ss_pred -------hhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCccccccccc
Q 005849 293 -------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLF 365 (674)
Q Consensus 293 -------~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~ 365 (674)
.++.|..+.+|+ .++.+||+.++||++++|||+||+||+||++||++|+++|||+++++|++|++++++|.|
T Consensus 84 ~~~~~~g~~l~~~~~~~p~-~~~~~pv~~~d~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~Vd~~G~~~~~~~~~ 162 (194)
T d1ffya2 84 LEKEYTGKELEWVVAQHPF-LDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQF 162 (194)
T ss_dssp CCCCCCTTTCTTCCCBCCT-TCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSC
T ss_pred eecccccccccCccccccc-cccccceeccceeecccCCcceeeecccCcchHHhHHHcCCcccceecccccccCCCCcc
Confidence 245677889999 589999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccccccccc
Q 005849 366 RGLDRFEARKKLWSDLEETGLAVKKEPHTLRV 397 (674)
Q Consensus 366 ~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~ 397 (674)
+|+.+++|+++|+++|+++|++++.+++.|+|
T Consensus 163 ~Gl~v~ea~~~Ii~~L~e~g~l~~~~~~~HsY 194 (194)
T d1ffya2 163 EGMFYDKANKAVTDLLTEKGALLKLDFITHSY 194 (194)
T ss_dssp SSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEE
T ss_pred CCcCHHHhHHHHHHHHHHCCCEecccccCcCC
Confidence 99999999999999999999999999998875
|
| >d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=3.7e-30 Score=251.26 Aligned_cols=138 Identities=36% Similarity=0.599 Sum_probs=123.7
Q ss_pred eeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchh-----------------------------------hhcc
Q 005849 252 TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHY-----------------------------------SQFI 296 (674)
Q Consensus 252 ~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y-----------------------------------~~l~ 296 (674)
...+|+|++.+++.+|+|||||||||+||+||+|||++++. ..+.
T Consensus 3 ~g~~V~F~v~~~~~~l~iwTTtPwTlpgn~avav~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 82 (192)
T d1h3na2 3 EGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFL 82 (192)
T ss_dssp EEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHTSCGGGHHHHHHHHHHHHHSCHHHHTCSSCCCCCEEE
T ss_pred ceEEEEEEecCCCcEEEEEeCCcchhhhccEEEECCchhHHHHHhhccchhHHHHHHHHhhhccchhhhhhhheeecccc
Confidence 45799999999999999999999999999999999998632 1245
Q ss_pred CcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccc--------------cc
Q 005849 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNE--------------VA 362 (674)
Q Consensus 297 G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e--------------~~ 362 (674)
+..+.+|++ ++.+||+.++||+++.|||+||+||+||++||++++++|||+++++|.+|.+.+ ++
T Consensus 83 ~~~~~~p~~-~~~vpv~~a~~V~~d~GTG~Vh~aPahg~~D~~~~~k~~lp~~~vi~~~g~~~~~~~~~~~~~~g~~~ns 161 (192)
T d1h3na2 83 GAYALNPAT-GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNS 161 (192)
T ss_dssp EEEEECTTT-CCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSS
T ss_pred ceeeecCCC-CCEEEEEeecccccccccceEEEecccCcccceeeccccccccccccccccccccccccccccCceEecc
Confidence 678899995 899999999999999999999999999999999999999999999998886443 47
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCcccc
Q 005849 363 GLFRGLDRFEARKKLWSDLEETGLAVKK 390 (674)
Q Consensus 363 g~~~g~~~~~ar~~i~~~L~~~g~~~~~ 390 (674)
|.|.|+.++||+++|++.|+++|++.+.
T Consensus 162 ~~~~Gl~v~~A~~~Ii~~L~~~glg~~~ 189 (192)
T d1h3na2 162 GPFDGTESEEGKRKVIAWLEEKGLGKGR 189 (192)
T ss_dssp GGGTTCBHHHHHHHHHHHHHHHTSEEEE
T ss_pred cccCCCcHHHHHHHHHHHHHHCCCccce
Confidence 8999999999999999999999986543
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=5.2e-24 Score=219.13 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=60.2
Q ss_pred hcCCcceeEEeehhhhhHHHHHHH--HhhhhcCCCCcceeEeeeeEe-CCCCccccccCCCccChhhHHhhhChhHHHHH
Q 005849 536 KFYPTTMLETGHDILFFWVARMVM--MGIEFTGSVPFSHVYLHGLIR-DSQGRKMSKTLGNVIDPIDTIKEFGADALRFT 612 (674)
Q Consensus 536 ~~~P~d~~~~G~Dii~~w~~~~~~--~~~~~~~~~Pf~~v~~hg~v~-d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~ 612 (674)
...+.++++.|.|++.++...... +.....+..|. .++.|+++. +.+|.|||||+||+|+++|+++.||+|++||+
T Consensus 225 ~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~l~l~ge~~KMSkrkGn~I~~~dll~~~~~d~~Ry~ 303 (317)
T d1irxa2 225 SHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFI 303 (317)
T ss_dssp HHSCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCC-BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHH
T ss_pred ccCceeEEEecceecccchhhhHhhhhhhhhcCCCCc-EEEEEEEEEECCccccccCCCCccccHHHHHHHCCHHHHHHH
Confidence 356788899999998765433222 12223344443 467899875 44566999999999999999999999999999
Q ss_pred HhcCCCCCccccC
Q 005849 613 ISLGTAGQDLSLS 625 (674)
Q Consensus 613 l~~~~~~~d~~fs 625 (674)
+++.++.++++|+
T Consensus 304 ~l~~~~~~~i~FD 316 (317)
T d1irxa2 304 YARHRPNKEIKID 316 (317)
T ss_dssp HHSSCTTSCEEEC
T ss_pred hcCCCCCCCcCCC
Confidence 9999999999997
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=3.7e-18 Score=180.60 Aligned_cols=140 Identities=18% Similarity=0.178 Sum_probs=99.2
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHH-------------------
Q 005849 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVE------------------- 148 (674)
Q Consensus 88 ~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve------------------- 148 (674)
.+++++|...+|||||+|||||+|+.+++|+++|.++..||+|....-..+.|.++...+.
T Consensus 6 ~~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~l 85 (348)
T d1f7ua2 6 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 85 (348)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHHhccccccccccchhH
Confidence 3678999999999999999999999999999999999999999999989999976542221
Q ss_pred --------HHHHHcCCCc---ccc-------------CHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCCccccCCh
Q 005849 149 --------KMLAAEGIKR---VEL-------------SRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDE 203 (674)
Q Consensus 149 --------~~~~~~g~~~---~~l-------------~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~ 203 (674)
+.+.+.+... +.+ +.++..+.....++...+.+++++.+||+.+| |..+-.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~Es~---- 161 (348)
T d1f7ua2 86 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQ---- 161 (348)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGG----
T ss_pred HHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc----
Confidence 1111111100 001 11122233334456667779999999999999 543321
Q ss_pred hHHHHHHHHHHHHHHcCceEEcccceec
Q 005849 204 QLSRAVVEAFIRLHEKGLIYQGSYMVNW 231 (674)
Q Consensus 204 ~~~~~v~~~f~~L~~kGliy~~~~~v~w 231 (674)
-+......+...|.++|++|.....+.+
T Consensus 162 ~~~~~~~~v~~~L~~~~~~~~~~ga~~~ 189 (348)
T d1f7ua2 162 VSKESMLKAIDLFKEKGLTHEDKGAVLI 189 (348)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEETTEEEE
T ss_pred ccccchHHHHHHHHhhccccccCCcccc
Confidence 2344456788999999999988776655
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=7.1e-17 Score=171.98 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=91.9
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCC-----------
Q 005849 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGI----------- 156 (674)
Q Consensus 88 ~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~----------- 156 (674)
.+++.+|...+|||+|+|||||+|+.+++|+++|.++..||+|....-..+.|.++-..+.. +...+.
T Consensus 5 ~~~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~-~~~~~~~~~~~~~~~~~ 83 (370)
T d1iq0a2 5 RPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFA-LRHYGLTWDGKEKYDHF 83 (370)
T ss_dssp EEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHH-HHHTTCCCCSSSCHHHH
T ss_pred CCCeEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHcCCEEEEEEeECCchHHHHHHHHH-HHHhccccccccchhhh
Confidence 35689999999999999999999999999999999999999999887778888764322111 111111
Q ss_pred ------------CccccC---HHHHHH----HHHHHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHH
Q 005849 157 ------------KRVELS---RDEFTK----RVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRL 216 (674)
Q Consensus 157 ------------~~~~l~---~e~f~~----~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L 216 (674)
..+++. ++.+.+ ..++..+.....+++++++||+.+| |..+- +-.+...+..++..|
T Consensus 84 ~~~~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es---~l~~~~~~~~~i~~l 160 (370)
T d1iq0a2 84 AGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWES---DIVRAGLLQKALALL 160 (370)
T ss_dssp HHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHH---HHHHTTHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccceeeceeeeec---ccccccchhhhHhhh
Confidence 001110 011111 1233345566667889999999999 43321 111344678889999
Q ss_pred HHcCceEEcc
Q 005849 217 HEKGLIYQGS 226 (674)
Q Consensus 217 ~~kGliy~~~ 226 (674)
.++|.+|+..
T Consensus 161 ~~~~~~~~~~ 170 (370)
T d1iq0a2 161 EQSPHVFRPR 170 (370)
T ss_dssp TTSTTEECCS
T ss_pred hhccceeecc
Confidence 9999999765
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=5.9e-11 Score=122.25 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=71.8
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
||+-.+|.|||.|||||+++.++.+.+|| ...|.-++. +|+...+ +.
T Consensus 2 vvtRfaPsPtG~lHiG~~rtal~n~~~Ak--~~~G~~iLR---idDtD~~---------------R~------------- 48 (305)
T d1j09a2 2 VVTRIAPSPTGDPHVGTAYIALFNYAWAR--RNGGRFIVR---IEDTDRA---------------RY------------- 48 (305)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HTTCEEEEC---BCCCCTT---------------SC-------------
T ss_pred eEEecCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEE---eCcCCCc---------------cC-------------
Confidence 56777899999999999999999999999 445643444 4444311 11
Q ss_pred HHHHHHHHHHHHHHHhccccC-CCC---c-cccCChhHHHHHHHHHHHHHHcCceEEcc
Q 005849 173 WKEKYGGTITSQIKRLGASCD-WTR---E-RFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~D-w~~---~-~~T~~~~~~~~v~~~f~~L~~kGliy~~~ 226 (674)
..++.+.|.++|+.||+..| +-. + -.....++....++.+++|.++|++|...
T Consensus 49 -~~~~~~~I~~dL~wLgi~wD~~p~~~~~~~~~~qS~r~~~y~~~~~~Li~~g~aY~C~ 106 (305)
T d1j09a2 49 -VPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAF 106 (305)
T ss_dssp -CTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEEC
T ss_pred -chHHHHHHHHHHHHHhcCcccCCcCCCCCcceeeecchhHHHHHHHHHHHcCCeeecc
Confidence 12466789999999998766 110 0 11234567788899999999999999764
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=1e-06 Score=89.01 Aligned_cols=95 Identities=25% Similarity=0.249 Sum_probs=66.2
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++.=.+|| +..|.-++. +|+.- ++. .
T Consensus 4 ~tRFAPsPtG~lHiG~~rtal~n~~~Ak--~~~G~~iLR---ieDtD-----------------~~R------------~ 49 (286)
T d1nzja_ 4 IGRFAPSPSGELHFGSLIAALGSYLQAR--ARQGRWLVR---IEDID-----------------PPR------------E 49 (286)
T ss_dssp EEEECCCTTSCCCHHHHHHHHHHHHHHH--HTTCEEEEE---ECCSC-----------------GGG------------S
T ss_pred eEeeCcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---eCCCC-----------------CCc------------C
Confidence 4555699999999999999999888887 335544433 23322 110 0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+..|..- ....++.+..++++.+|.++|++|.-
T Consensus 50 ~~~~~~~I~~dL~wlgl~~d~~~---~~QS~r~~~Y~~~~~~L~~~g~aY~C 98 (286)
T d1nzja_ 50 VPGAAETILRQLEHYGLHWDGDV---LWQSQRHDAYREALAWLHEQGLSYYC 98 (286)
T ss_dssp CTTHHHHHHHHHHHTTCCCSSCC---EEGGGCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHhhhcccccc---chhHHHHHHHHHHHHHHHHcCCcccc
Confidence 13467789999999998666322 22334556678899999999999965
|
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=2e-06 Score=88.53 Aligned_cols=98 Identities=24% Similarity=0.310 Sum_probs=67.6
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
+++..=+ .|.|||.|||||+++.++.=.+||- ..|.=++.+ | ..++.
T Consensus 18 ~~v~tRF-APSPTG~LHiG~~rtal~n~l~Ak~--~~G~fiLRI---E-----------------DtD~~---------- 64 (331)
T d1gtra2 18 TTVHTRF-PPEPNGYLHIGHAKSICLNFGIAQD--YKGQCNLRF---D-----------------DTNPV---------- 64 (331)
T ss_dssp SSCEEEE-CCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEEEE---C-----------------CCCGG----------
T ss_pred CeEEEEe-CCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe---C-----------------cCCCC----------
Confidence 3444444 4999999999999999999888883 344333332 2 22222
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
+...++.+.|.++|+.||+..|.. .. .-.++.+.-+..+.+|.++|++|..
T Consensus 65 --R~~~~~~~~I~~dL~WLGl~wD~~--~~-~QS~r~~~Y~~~~~~L~~~G~aY~C 115 (331)
T d1gtra2 65 --KEDIEYVESIKNDVEWLGFHWSGN--VR-YSSDYFDQLHAYAIELINKGLAYVD 115 (331)
T ss_dssp --GCCHHHHHHHHHHHHHTTCCCSSS--CE-EGGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred --cccchHHHHHHHHHHHHhcccccc--ce-ecchHHHHHHHHHHhhhhcCCcccc
Confidence 112467788999999999876622 21 2334567788999999999999954
|
| >d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=95.58 E-value=0.0052 Score=61.89 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=41.6
Q ss_pred CCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
+-+|+.++|.||.+.....--++.- ..++.| ..+++.-++...+|+|||||.||+||..+
T Consensus 184 ~~~~iqiGGsDQ~~Ni~~Grdl~~~-~~~~~~-~~~it~pLl~~~~G~Km~KS~~n~i~l~~ 243 (323)
T d1jila_ 184 LNCKIQVGGSDQWGNITSGIELMRR-MYGQTD-AYGLTIPLVTKSDGKKFGKSESGAVWLDA 243 (323)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHH-HHCCCC-CEEEEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred hhchhhhhccccHHHhhhhhhhhhh-hccccc-ceEEecccccchhhhhhhhcCCCCeeeec
Confidence 5689999999997765432211111 224444 34556677778999999999999998865
|
| >d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Thermus thermophilus [TaxId: 274]
Probab=95.34 E-value=0.011 Score=60.19 Aligned_cols=58 Identities=31% Similarity=0.340 Sum_probs=39.3
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCc-cccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~-KMSKS~gN~i~~~d 599 (674)
+.+|+...|.||.... +++-++ --+..+.| .++.+-++...+|. |||||.||+|+..|
T Consensus 182 l~~~~vp~G~DQ~~~i~l~Rdla--~r~~~~~~--~~~~~p~L~gldG~~KMSKS~~naI~L~d 241 (343)
T d1h3fa1 182 IRADVEMGGTDQRFNLLVGREVQ--RAYGQSPQ--VCFLMPLLVGLDGREKMSKSLDNYIGLTE 241 (343)
T ss_dssp HTCSEEEEEGGGHHHHHHHHHHH--HHTTCCCC--EEEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred hcccccccccchHHHHHHHHHHH--hhcCcccc--ceeeccccccccccchhhcccccceeeec
Confidence 3589999999995432 222222 22334434 45666777788984 99999999998764
|
| >d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.76 E-value=0.034 Score=55.25 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=31.0
Q ss_pred CCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCc-cccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~-KMSKS~gN~i~~~d 599 (674)
+-+|+.+.|.||.... +++..+ ..+. ...+.|.++...+|+ |||||.||+|+..|
T Consensus 162 ~~~~~~~~G~DQ~~~~---~l~rdl--~~~~--~~~~~~~~l~gldG~~KMSKS~~n~I~L~D 217 (306)
T d1j1ua_ 162 LGVDVAVGGMEQRKIH---MLAREL--LPKK--VVCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (306)
T ss_dssp HTCSEEEEEGGGHHHH---HHHHHH--SSSC--CEEEEECCCCCTTCCC-------CSCBTTC
T ss_pred cCcceeccchhhHHHH---HHhhhc--cccc--ceecccccccCcccccccccccccccccCC
Confidence 4679999999996532 222222 2222 245667778888995 99999999998754
|
| >d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=92.45 E-value=0.05 Score=54.27 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=40.3
Q ss_pred CCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
+.+|+.++|.||.+....-.-++- ...+..+ ...++..++.+.+|+|||||.||.||.++
T Consensus 184 ~~~~~qiGGsDQ~gNi~~G~dli~-~~~~~~~-~~~lT~PLL~~~~G~K~~ks~~n~i~l~~ 243 (319)
T d2ts1a_ 184 EGCRLQIGGSDQWGNITAGLELIR-KTKGEAR-AFGLTIPLVTKADGTKFGKTESGTIWLDK 243 (319)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHH-HHHC--C-CEEEEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred cCCchhhccchhhhHHHHHHHHHH-Hhccccc-ceEeecccccccccceeeecCCCCccccc
Confidence 468999999999775443322211 1223323 34466777888999999999999999754
|
| >d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.31 E-value=0.53 Score=46.85 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=33.7
Q ss_pred CCcceeEEeehhhhhHHHHHHHHhhh--hcCCCCcceeEeeeeEeCCCCcccccc-CCCccChhh
Q 005849 538 YPTTMLETGHDILFFWVARMVMMGIE--FTGSVPFSHVYLHGLIRDSQGRKMSKT-LGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~~~~~~~~~~--~~~~~Pf~~v~~hg~v~d~~G~KMSKS-~gN~i~~~d 599 (674)
+-+|+...|.||.... ++...++ ++... ...+.+.++...+|.||||| .||+|...|
T Consensus 174 ~~ad~v~~G~DQ~~~i---~l~rd~a~r~~~~~--~~~l~~pll~~l~g~kmsks~~~~~I~l~D 233 (339)
T d1n3la_ 174 LKVDAQFGGIDQRKIF---TFAEKYLPALGYSK--RVHLMNPMVPGLTGSKMSSSEEESKIDLLD 233 (339)
T ss_dssp TTCSEEEEEGGGHHHH---HHHHHHGGGGTCCC--CEEEEECCCCCSSCC-------CCSCBTTC
T ss_pred ccCCccccchhHHHHH---HHHHHHHhhhccCc--ceeeeeccccccccccccccchhhcccccC
Confidence 4579999999996532 2222222 33333 45777888888999999997 589888643
|
| >d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.55 E-value=0.41 Score=48.73 Aligned_cols=55 Identities=20% Similarity=0.148 Sum_probs=34.4
Q ss_pred cceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCC-ccChh
Q 005849 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPI 598 (674)
Q Consensus 540 ~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN-~i~~~ 598 (674)
..+...|.||.... +.+-++- -++...| .++.|.++..++| .|||||..| +|...
T Consensus 223 ~~lvpvG~DQ~~h~~ltRDia~--r~~~~~p--~~l~~~~lpgL~G~~~KMSsS~~~s~I~l~ 281 (386)
T d1r6ta2 223 QCLIPCAIDQDPYFRMTRDVAP--RIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLT 281 (386)
T ss_dssp EEEEEEEGGGHHHHHHHHHHGG--GGTCCCC--EEEEECCCEETTEEEEECCTTSTTCCCBTT
T ss_pred ccccccchhHHHHHHHHHHHHH--HhCCCCc--eeeccccccCCCCcccccccCCCCceeeec
Confidence 35778899996532 3333322 2333444 5667778777888 699999876 57653
|
| >d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.35 E-value=0.3 Score=48.02 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
-|||.|||||... -..+.++++. |++|.+..|
T Consensus 36 ~PTG~lHlGh~v~---~~~~~~lq~~-g~~~~~~Ia 67 (306)
T d1j1ua_ 36 EPSGKIHLGHYLQ---IKKMIDLQNA-GFDIIILLA 67 (306)
T ss_dssp CCCSSCBHHHHHH---HHHHHHHHHT-TEEEEEEEC
T ss_pred CCCCcchHHHHHH---HHHHHHHHHC-CCcEEEEec
Confidence 4569999999872 2346777776 999888665
|