Citrus Sinensis ID: 005852

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670----

MEPLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTGTDNALSSSSEAIEVASDNKIDSENETPSTGDVSHSSSGINSINDVAKQDDLQRESASDDMSVAPDTALTSPKLPEPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFSDSSSISSSHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccEEccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc

ccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEcccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccHHHHHHHHHcccccccccccccccccccccEEcccccccHHHHHHHHcHHHccccccccHHHHHHHcccccHHHccHHHHHHHHHHHHcccHHHHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

mepltaaqdvsivpdhkidkfeeygyagnnvkqddrslesktgtdnalssSSEAIEVasdnkidsenetpstgdvshsssginsindvakqddlqresasddmsvapdtaltspklpepevvsgtenasplegsdsildanlpesaseitgenpidvepssfsnptdlgndgskfsrifsdsssissshapiePLAAVIsvssdttvepqilpkgdtetvaspstiknveqsekpllsgedssssmevhdlnkngssgtsvspsifpfsneketcdlnesnsssftespptgsssspagipapSVVSAALQvlpgkvlvpAVVDQVQGQALSALQVLKVIEAdvkpgdlcirREYARWLVSASStltrstmskvypamyienvtdlafdditpedpdfssiqgLAEAGLISsklshrdllneepgpifflpesplsrqDLVSWKMALEKRQLPEANKKILYQLSgfididkinpdawPALLADLTAGEQGIIALAFGctrlfqpdkpvtNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR

mepltaaqdvsivpdhkIDKFEEYGYAgnnvkqddrslesktgtdnalsssseAIEVAsdnkidsenetpstgdvshsssginSINDVAKQDDLQRESASDDMSVAPDTaltspklpepevVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFSDSSSISSSHAPIEPLAAVISVSsdttvepqilpkgdtetvaspstiknveqsekPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWlvsasstltrstmskvYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESfekelsmerekidvVEKMAEEARQELerlraerevdkIALMKERAAIESEMEILSKLRREVEEQLeslmsnkveisyeKERINMLRKEAENENQEIARLQYELEVERKALSMAR

MEPLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTGTDNALSSSSEAIEVASDNKIDSENETPSTGDVSHSSSGINSINDVAKQDDLQRESASDDMSVAPDTALTSPKLPEPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGskfsrifsdsssisssHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNsssftespptgsssspagipapsvvsaaLQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIeaesaaenavsehsaLVAEVEKEINESFEKELSMEREKIDVVEKMaeearqelerlraereVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR

*******************KFEEYGY**************************************************************************************************************************************************************************************************************************************************************************************VVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITP*******IQGLAEAGLI**************GPIFFLPE**LSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG**********************************************************************************************************************************************************

*******************************************************************************************************************************************************************************************************************************************************************************************************************AALQVLPGKVLVPAVVDQVQGQALSALQVLKVI*ADVKPGDLCIRREYARWLVSASSTLTRSTM*************DLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEA**KILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEAS************************************************************************************************************************************************KALSM**

********DVSIVPDHKIDKFEEYGYAGNNVKQ***********************************************GINSINDVAKQD**************PDTALTSPKLP*************LEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFS*********APIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIK*********************************VSPSIFPFSNEKET*************************IPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIE*************ALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR

**************************************************************************************************************************************************************************************************************************************************************************************************************************GKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKL**********GPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKA*****

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MEPLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTGTDNALSSSSEAIEVASDNKIDSENETPSTGDVSHSSSGINSINDVAKQDDLQRESASDDMSVAPDTALTSPKLPEPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFSDSSSISSSHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSMAR

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		674
255545258		976	conserved hypothetical protein [Ricinus	0.962	0.664	0.576	0.0
224134861		592	predicted protein [Populus trichocarpa]	0.578	0.658	0.757	1e-177
356529194		975	PREDICTED: uncharacterized protein LOC10	0.988	0.683	0.539	1e-175
356561542		1002	PREDICTED: uncharacterized protein LOC10	0.991	0.666	0.538	1e-173
224122346		793	predicted protein [Populus trichocarpa]	0.587	0.499	0.769	1e-172
302143846		1040	unnamed protein product [Vitis vinifera]	0.637	0.413	0.738	1e-171
225464485		985	PREDICTED: uncharacterized protein LOC10	0.637	0.436	0.738	1e-171
297808395		947	hypothetical protein ARALYDRAFT_489250 [	0.905	0.644	0.533	1e-168
222424656		805	AT5G23890 [Arabidopsis thaliana]	0.692	0.580	0.639	1e-167
15237846		946	uncharacterized protein [Arabidopsis tha	0.692	0.493	0.639	1e-166

>gi\|255545258\|ref\|XP_002513690.1\| conserved hypothetical protein [Ricinus communis] gi\|223547598\|gb\|EEF49093.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/683 (57%), Positives = 493/683 (72%), Gaps = 34/683 (4%)

Query: 1   MEPLTAAQDVSIVPDHKIDKFEEYGYA--GNNVKQDDRSLESKTGTDNALSSSSEAIEVA 58
           MEPLT  Q+VS+V D + DK E+   A    N+K++  SLE KT TD  L SS +  E  
Sbjct: 134 MEPLTVQQEVSLVSDDEEDKIEKNTSAESSANLKEEYISLEHKTNTDVDLPSSPQIEETH 193

Query: 59  SDNKIDSENETPSTGD-VSHSSSGINSINDVAKQDDLQRESASDDMSVAPDTALTSPKLP 117
           ++NK+  + +   + D  ++  S  +++++   Q+DLQ +SA D      +T   S  LP
Sbjct: 194 NENKLSGDTDQLLSADNGNYIISSNDTVDNAPVQEDLQYDSAFDSKLGVLETTPNSTNLP 253

Query: 118 EPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSR 177
           E ++                +D NL      + GE    +   +         + +  S 
Sbjct: 254 ESKIAK--------------IDKNL------VNGEPAYSLNIINTITEHTEAKENTIPSS 293

Query: 178 IFSDSSSISSSHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLL 237
             S S  + SS   +  ++  I+++SDT  E   L K   ++ AS  T + +  S   + 
Sbjct: 294 DSSISPVLKSSEPVV--VSTSITLTSDTVSEVGNLFKDGMDSEASVPTKEELNTSTNQV- 350

Query: 238 SGEDSSSSMEVHDLNKNGSSGTSVSPSI-FPFSNEKETC---DLNESNSSSFTESPPTGS 293
           S + +SSS+E++ L ++GSSG +      +PF+N+++     D+N S +SS  ESPP   
Sbjct: 351 STDRNSSSLEMNYLTESGSSGVTSVSEWAYPFANKQDIVANDDMNLSKTSS--ESPPFSG 408

Query: 294 SSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRR 353
           S S AG+PAPS V  +LQV PGK+LVPAVVDQ  GQAL+ALQVLKVIEADV+P DLC RR
Sbjct: 409 SFSSAGVPAPSAVPESLQVSPGKILVPAVVDQTHGQALAALQVLKVIEADVQPSDLCTRR 468

Query: 354 EYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSK 413
           EYARWLV+ASS L+RST+SKVYPAMYIEN T+ AFDDITP+DPDFSSIQGLAEAGLISS+
Sbjct: 469 EYARWLVAASSALSRSTLSKVYPAMYIENATEPAFDDITPDDPDFSSIQGLAEAGLISSR 528

Query: 414 LSHRDLLN--EEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDK 471
           LS+ DLL+  E+ GP+ F PESPLSRQDLVSWKMALEKRQLPEAN+KILYQLSGF D+DK
Sbjct: 529 LSNHDLLSPVEDQGPLNFSPESPLSRQDLVSWKMALEKRQLPEANRKILYQLSGFRDVDK 588

Query: 472 INPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQ 531
           I+PDAWPAL+ADL+AG+QGII+LAFGCTRLFQP+KPVT AQAAVALAIGEASD VNEEL 
Sbjct: 589 IHPDAWPALIADLSAGDQGIISLAFGCTRLFQPNKPVTKAQAAVALAIGEASDIVNEELA 648

Query: 532 RIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA 591
           RIEAES AENAVS H+ALVA+VE++IN SFEKEL MEREKI+ VEKMAEEAR ELERLRA
Sbjct: 649 RIEAESMAENAVSAHNALVAQVEQDINASFEKELLMEREKINAVEKMAEEARLELERLRA 708

Query: 592 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN 651
           ERE D  ALMKERA+IE+EME+LS+L+ EVEEQL++L+S+KVEISYEKERIN L+KEAEN
Sbjct: 709 EREADNFALMKERASIEAEMEVLSRLKGEVEEQLQTLLSSKVEISYEKERINKLQKEAEN 768

Query: 652 ENQEIARLQYELEVERKALSMAR 674
           E QEI+RLQYELEVERKALS+AR
Sbjct: 769 EKQEISRLQYELEVERKALSIAR 791

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224134861\|ref\|XP_002321923.1\| predicted protein [Populus trichocarpa] gi\|222868919\|gb\|EEF06050.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356529194\|ref\|XP_003533181.1\| PREDICTED: uncharacterized protein LOC100780360 [Glycine max]	Back alignment and taxonomy information

>gi\|356561542\|ref\|XP_003549040.1\| PREDICTED: uncharacterized protein LOC100810148 [Glycine max]	Back alignment and taxonomy information

>gi\|224122346\|ref\|XP_002318812.1\| predicted protein [Populus trichocarpa] gi\|222859485\|gb\|EEE97032.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|302143846\|emb\|CBI22707.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225464485\|ref\|XP_002271744.1\| PREDICTED: uncharacterized protein LOC100264485 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297808395\|ref\|XP_002872081.1\| hypothetical protein ARALYDRAFT_489250 [Arabidopsis lyrata subsp. lyrata] gi\|297317918\|gb\|EFH48340.1\| hypothetical protein ARALYDRAFT_489250 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|222424656\|dbj\|BAH20282.1\| AT5G23890 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|15237846\|ref\|NP_197777.1\| uncharacterized protein [Arabidopsis thaliana] gi\|10176856\|dbj\|BAB10062.1\| unnamed protein product [Arabidopsis thaliana] gi\|332005846\|gb\|AED93229.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		674
TAIR\|locus:2172853		946	AT5G23890 [Arabidopsis thalian	0.956	0.681	0.478	1.3e-139
TAIR\|locus:2156687		761	AT5G52410 [Arabidopsis thalian	0.532	0.471	0.626	1.3e-115
TAIR\|locus:2102375		558	AT3G25680 "AT3G25680" [Arabido	0.531	0.641	0.334	2.6e-49
CGD\|CAL0003874		1404	PGA55 [Candida albicans (taxid	0.324	0.155	0.230	5.7e-06
UNIPROTKB\|Q59SG9		1404	PGA55 "Flocculin-like protein"	0.324	0.155	0.230	5.7e-06
MGI\|MGI:109172		934	Dspp "dentin sialophosphoprote	0.379	0.274	0.213	1.3e-05
SGD\|S000001800		406	SRP40 "Nucleolar serine-rich p	0.369	0.613	0.217	1.3e-05
UNIPROTKB\|Q9NZW4		1301	DSPP "Dentin sialophosphoprote	0.347	0.179	0.244	1.5e-05
UNIPROTKB\|E9PTW3		952	Dspp "Dentin sialophosphoprote	0.403	0.285	0.219	7.4e-05
CGD\|CAL0000304		1249	HYR3 [Candida albicans (taxid:	0.302	0.163	0.271	0.0001

TAIR\|locus:2172853 AT5G23890 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1366 (485.9 bits), Expect = 1.3e-139, P = 1.3e-139
 Identities = 330/689 (47%), Positives = 424/689 (61%)

Query:     1 MEPLTAAQDVSIVPDHKI--DKFEEYGYAGNNVKQDDRSLESKTGTDNALSSSSEAIEVA 58
             M  LT+ Q+  I    +I  D+ +      +N+K +D+S+ES     N ++  S+  E +
Sbjct:   125 MHSLTSQQESMIQSSDEISSDEIKVANSEESNLKDEDKSIES-----NDVAQKSD--EGS 177

Query:    59 SDNKIDSENETPSTGDVSHSSSGINSINDVAKQDDLQRESASDDMSVAPDTALTSPKLPE 118
              ++K+  +  +   G ++  +    SI     + DL   + +D     P+TA  S K   
Sbjct:   178 GEDKLLGKETSSFDGVMTDEADATESIPQNTPEADLMVNAETD-----PETA-ESEK--- 228

Query:   119 PEVVSGTENASPLEGSDS--ILDANLPESASEITGENPIDVEPSSFSN--PT---DLGND 171
               ++S  E+ S L+ S    +LDA   ES++ +  EN    +P S  N  PT   DL N 
Sbjct:   229 --IIS--ESKSLLDSSTEPILLDA---ESSNLVGVENTNSEDPESLLNTEPTNVSDLENH 281

Query:   172 GXXXXXXXXXXXXXXXXHAPIEPLAAVISVSS--DTTVEPQILPKGDTETV-ASPSTIKN 228
                              +A    +  +  VSS  D+T +PQI+P  DTET  A+   +  
Sbjct:   282 VNSQKEDSLSSLSGIDAYAASGTVTELPEVSSQLDSTSKPQIVPLNDTETAFATAEELSE 341

Query:   229 VEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLN-ESNXXXXXX 287
             V  + +   + + SS S    D++      +S SP   P S +    +LN  S       
Sbjct:   342 VNGTPEYFETSDWSSIS----DIDTTKELESSKSP--VPESTDGSKDELNIYSQDELDDN 395

Query:   288 XXXXXXXXXXXXXXXXXXXXXXLQVL--PGKVLVPAVVDQVQGQALSALQVLKVIEADVK 345
                                   + V+  PGK+LVP   DQ+Q QA +ALQVLKVIE D +
Sbjct:   396 RMLLEIPSGGSAFSSAGIPAPFMSVIVNPGKILVPVAADQIQCQAFAALQVLKVIETDTQ 455

Query:   346 PGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLA 405
             P DLC RREYARWL+SASS L+R+T SKVYPAMYIENVT+LAFDDITPEDPDFSSIQGLA
Sbjct:   456 PSDLCTRREYARWLISASSALSRNTTSKVYPAMYIENVTELAFDDITPEDPDFSSIQGLA 515

Query:   406 EAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSG 465
             EAGLI+SKLS+RDLL++  G   F PES LSRQDL+SWKMALEKRQLPEA+KK+LY+LSG
Sbjct:   516 EAGLIASKLSNRDLLDDVEGTFLFSPESLLSRQDLISWKMALEKRQLPEADKKMLYKLSG 575

Query:   466 FIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDA 525
             FIDIDKINPDAWP+++ADL+ GEQGI ALAFGCTRLFQP KPVT  QAA+AL+ GEASD 
Sbjct:   576 FIDIDKINPDAWPSIIADLSTGEQGIAALAFGCTRLFQPHKPVTKGQAAIALSSGEASDI 635

Query:   526 VNEELQRIXXXXXXXXXXXXXXXLVAEVEKEINESFEKELSMEREKIDVVEKMXXXXXXX 585
             V+EEL RI               LVAEVEK++N SFEKELSMEREKI+ VEKM       
Sbjct:   636 VSEELARIEAESMAEKAVSAHNALVAEVEKDVNASFEKELSMEREKIEAVEKMAELAKVE 695

Query:   586 XXXXXXXXXVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINML 645
                       + +AL+KERAA+ESEME+LS+LRR+ EE+LE LMSNK EI++EKER+  L
Sbjct:   696 LEQLREKREEENLALVKERAAVESEMEVLSRLRRDAEEKLEDLMSNKAEITFEKERVFNL 755

Query:   646 RKEAENENQEIARLQYELEVERKALSMAR 674
             RKEAE E+Q I++LQYELEVERKALSMAR
Sbjct:   756 RKEAEEESQRISKLQYELEVERKALSMAR 784

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR\|locus:2156687 AT5G52410 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2102375 AT3G25680 "AT3G25680" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

CGD\|CAL0003874 PGA55 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q59SG9 PGA55 "Flocculin-like protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

MGI\|MGI:109172 Dspp "dentin sialophosphoprotein" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

SGD\|S000001800 SRP40 "Nucleolar serine-rich protein" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NZW4 DSPP "Dentin sialophosphoprotein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PTW3 Dspp "Dentin sialophosphoprotein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

CGD\|CAL0000304 HYR3 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XV3389	hypothetical protein (592 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		674
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-08
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	4e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	2e-05
pfam13868		349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	4e-05
COG2433		652	COG2433, COG2433, Uncharacterized conserved protei	5e-05
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
PRK12704		520	PRK12704, PRK12704, phosphodiesterase; Provisional	7e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1579		239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	1e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	2e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	4e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	8e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	0.001
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
TIGR03319		514	TIGR03319, RNase_Y, ribonuclease Y	0.001
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
cd01046		123	cd01046, Rubrerythrin_like, rubrerythrin-like, dii	0.002
TIGR01069		771	TIGR01069, mutS2, MutS2 family protein	0.002
pfam13514		1118	pfam13514, AAA_27, AAA domain	0.002
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	0.003
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	0.004
TIGR04211		198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.004
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.004
PRK04778		569	PRK04778, PRK04778, septation ring formation regul	0.004
pfam12474		142	pfam12474, PKK, Polo kinase kinase	0.004
COG3096		1480	COG3096, MukB, Uncharacterized protein involved in	0.004

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 523 SDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEA 582
             A+ ++L R+EAE             +A++ KE+ E  E E+    E+++  E+   EA
Sbjct: 728 ISALRKDLARLEAEVEQ------LEERIAQLSKELTE-LEAEIEELEERLEEAEEELAEA 780

Query: 583 RQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 642
             E+E L A+ E  K  L   R A++     L+ L  E     E L S +  I+  + R+
Sbjct: 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

Query: 643 NMLRKEAENENQEIARLQYELE 664
             L ++ E  +++I  L  E+E
Sbjct: 841 EDLEEQIEELSEDIESLAAEIE 862

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin	Back alignment and domain information

>gnl\|CDD\|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|237177 PRK12704, PRK12704, phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|188306 TIGR03319, RNase_Y, ribonuclease Y	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|153105 cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain	Back alignment and domain information

>gnl\|CDD\|130141 TIGR01069, mutS2, MutS2 family protein	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|234501 TIGR04211, SH3_and_anchor, SH3 domain protein	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>gnl\|CDD\|204935 pfam12474, PKK, Polo kinase kinase	Back alignment and domain information

>gnl\|CDD\|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		674
PF00395		45	SLH: S-layer homology domain; InterPro: IPR001119	98.93
PF00395		45	SLH: S-layer homology domain; InterPro: IPR001119	97.96
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	95.69
PRK00106		535	hypothetical protein; Provisional	95.06
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	94.91
PRK12704		520	phosphodiesterase; Provisional	92.2
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	91.94
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	91.94
PRK00106		535	hypothetical protein; Provisional	91.25
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	90.56
KOG0579		1187	consensus Ste20-like serine/threonine protein kina	89.99
PLN03188		1320	kinesin-12 family protein; Provisional	89.54
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	89.06
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	88.76
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	88.5
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.4
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	88.25
PF10186		302	Atg14: UV radiation resistance protein and autopha	87.24
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	87.15
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	86.23
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	86.21
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	86.04
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	85.73
PF10186		302	Atg14: UV radiation resistance protein and autopha	85.68
PRK12704		520	phosphodiesterase; Provisional	85.57
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	85.23
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	85.15
PTZ00266		1021	NIMA-related protein kinase; Provisional	84.42
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	84.06
PRK12705		508	hypothetical protein; Provisional	83.66
PF04156		191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	83.61
PRK11637		428	AmiB activator; Provisional	83.4
PF10146		230	zf-C4H2: Zinc finger-containing protein ; InterPro	83.38
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	82.24
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	81.95
PHA02562		562	46 endonuclease subunit; Provisional	81.47
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	81.35
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	81.3
PRK09039		343	hypothetical protein; Validated	81.29
PF12072		201	DUF3552: Domain of unknown function (DUF3552); Int	81.06
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	80.99
KOG1103		561	consensus Predicted coiled-coil protein [Function	80.89
PRK11637		428	AmiB activator; Provisional	80.89
PF09731		582	Mitofilin: Mitochondrial inner membrane protein; I	80.47
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	80.24
PF00038		312	Filament: Intermediate filament protein; InterPro:	80.21
PTZ00266		1021	NIMA-related protein kinase; Provisional	80.1

>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]	Back alignment and domain information

Probab=98.93  E-value=1e-09  Score=83.75  Aligned_cols=44  Identities=27%  Similarity=0.421  Sum_probs=31.3

Q ss_pred             CccCCCCCCCCh-HHHHHHHHcCCccCCcccccCCCCCCCCcccCCCCcCcHHHHH
Q 005852          387 AFDDITPEDPDF-SSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLV  441 (674)
Q Consensus       387 AF~DV~~sdpyf-~yIQAAAEAGIIsG~LSg~~~~~~~dG~~~FkPDspITRQELA  441 (674)
                      .|+||+..+|+| .+|+.+++.|||.|+.           +++|+|+++|||+|||
T Consensus         1 ~F~Dv~~~~~~~a~~i~~~~~~gi~~G~~-----------~~~f~P~~~iTR~e~A   45 (45)
T PF00395_consen    1 PFKDVPSISWAYAEAIQWLYQLGIISGYS-----------DGTFNPNDPITRAEAA   45 (45)
T ss_dssp             -BTTB-TTSSSTTHHHHHHHHTTSS---T-----------TS---TTSB-BHHHHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHHcCCcccCC-----------CCeECCCCCcCHHHhC
Confidence            499999999955 9999999999999972           3479999999999986

Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.

>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PLN03188 kinesin-12 family protein; Provisional	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PTZ00266 NIMA-related protein kinase; Provisional	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK12705 hypothetical protein; Provisional	Back alignment and domain information

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PTZ00266 NIMA-related protein kinase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		674
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-08
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-07
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	4e-08
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	2e-05
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	3e-05
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	1e-04
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	1e-04
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	1e-06
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	4e-05
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	6e-06
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	7e-05
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	1e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
2qag_B		427	Septin-6, protein NEDD5; cell cycle, cell division	5e-05
1f5n_A		592	Interferon-induced guanylate-binding protein 1; GB	1e-04
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	1e-04
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-04
3pyw_A		203	S-layer protein SAP; SLH-domains, polysaccharide b	3e-04
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	7e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 32/157 (20%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 521  EASDAVNEELQRIEAE-SAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMA 579
            +    + ++  ++  E    E  VS+ +  +AE E++     + +   E    ++  ++ 
Sbjct: 990  DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049

Query: 580  EE--ARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISY 637
            +E  +RQELE+++ + E +   L ++ A +++++  L     + EE+L++ ++    +  
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA---RLED 1106

Query: 638  EKERINMLRKEAENENQEIARLQYELEVERKALSMAR 674
            E  + N   K+       I+ LQ +LE E+ A + A 
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

PyMOL of 1i84

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427	Back alignment and structure

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-2, protein structure initiative; 1.80A {Bacillus anthracis} Length = 203	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		674
3pyw_A		203	S-layer protein SAP; SLH-domains, polysaccharide b	99.97
4aq1_A		892	SBSB protein; structural protein, S-layer protein,	99.89
3pyw_A		203	S-layer protein SAP; SLH-domains, polysaccharide b	99.76
4aq1_A		892	SBSB protein; structural protein, S-layer protein,	99.43
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	92.17
2no2_A		107	HIP-I, huntingtin-interacting protein 1; clathrin	89.62
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	87.82
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	87.08
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	87.08
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	86.96
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	86.54
2i1j_A		575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	84.08

>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}	Back alignment and structure

Probab=99.97  E-value=7.6e-30  Score=243.43  Aligned_cols=169  Identities=20%  Similarity=0.173  Sum_probs=135.2

Q ss_pred             cccccC-CCceeeccccChhHHHHHHHccccccCC-CCcCCCCCccHHHHHHHHHHHhcccccccccccccccccccCCC
Q 005852          308 AALQVL-PGKVLVPAVVDQVQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTD  385 (674)
Q Consensus       308 ~af~v~-s~rv~Vp~a~D~~qIeaLAaLGILkg~E-gtF~Pn~pITRaEFArwLVRAls~L~R~p~~kI~Pam~is~st~  385 (674)
                      .+|.|. .+||    +  ...|+.|+.+|||+|++ ++|+|+++|||+||+.||+|+++.          +   ......
T Consensus         3 ~~F~Dv~~~~w----a--~~~I~~l~~~gii~G~~dg~F~P~~~iTR~e~a~~l~r~~~~----------~---~~~~~~   63 (203)
T 3pyw_A            3 KTFPDVPADHW----G--IDSINYLVEKGAVKGNDKGMFEPGKELTRAEAATMMAQILNL----------P---IDKDAK   63 (203)
T ss_dssp             CCBTTBCTTST----T--HHHHHHHHHTTSCCCCTTSCCCTTCBCBHHHHHHHHHHHTTC----------C---CCTTCC
T ss_pred             CCCcCCCCCcH----H--HHHHHHHHHCcCEecCCCCeECCCCCchHHHHHHHHHHHhCC----------C---CCcCCC
Confidence            468555 7766    4  67999999999999986 799999999999999999999872          1   112234


Q ss_pred             CCccCCCCCCCChHHHHHHHHcCCccCCcccccCCCCCCCCcccCCCCcCcHHHHHHHHHH-HhhcCCchhhhhhhccCC
Q 005852          386 LAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMA-LEKRQLPEANKKILYQLS  464 (674)
Q Consensus       386 ~AF~DV~~sdpyf~yIQAAAEAGIIsG~LSg~~~~~~~dG~~~FkPDspITRQELAvwkVa-Le~~~Lp~ad~k~L~~~s  464 (674)
                      ..|+||+ +||++.+|+.|+++|||.|+           +++ |+|+++|||+||+.|+++ +++..   ..  ......
T Consensus        64 ~~F~Dv~-~~w~~~~i~~a~~~Gii~g~-----------~~~-F~P~~~iTR~e~a~~l~r~~~~~~---~~--~~~~~~  125 (203)
T 3pyw_A           64 PSFADSQ-GQWYTPFIAAVEKAGVIKGT-----------GNG-FEPNGKIDRVSMASLLVEAYKLDT---KV--NGTPAT  125 (203)
T ss_dssp             CSCGGGC-SSTTHHHHHHHHHTTSSCCC-----------SSC-CCTTSBCBHHHHHHHHHHHHTGGG---GS--SSCCCC
T ss_pred             CCCCCCC-cHHHHHHHHHHHHCcCeecC-----------CCC-CCCCCcccHHHHHHHHHHHhcccc---cc--ccccCC
Confidence            6899995 89999999999999999997           234 999999999999998774 33221   10  011235


Q ss_pred             CccccCCCCcchHHHHHHHHhcCcccceecccCCCccccCCCCCcHHHHHHHHHcc
Q 005852          465 GFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG  520 (674)
Q Consensus       465 ~F~DadkIs~wA~~AVaadL~AGE~gII~~v~G~tg~FqPkkPVTRAEAAaaL~sG  520 (674)
                      .|.|...| .|+.++|...+..   ||+   .|+.+.|+|++++||+|||++|++-
T Consensus       126 ~f~D~~~i-~wa~~~v~~~~~~---Gi~---~g~~~~f~P~~~iTRaE~A~~l~r~  174 (203)
T 3pyw_A          126 KFKDLETL-NWGKEKANILVEL---GIS---VGTGDQWEPKKTVTKAEAAQFIAKT  174 (203)
T ss_dssp             CCHHHHTC-SSSHHHHHHHHHT---TCS---CCCSSCCCTTSBCBHHHHHHHHHHH
T ss_pred             CCCCCCcc-HHHHHHHHHHHHC---cCE---eCCCCCcCCCCCCcHHHHHHHHHHH
Confidence            79999999 8999999887765   465   5655689999999999999999964

PyMOL of 3pyw

>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C	Back alignment and structure

>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}	Back alignment and structure

>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		674
d1f5na1		300	a.114.1.1 (A:284-583) Interferon-induced guanylate	5e-05
d2es4d1		280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	8e-05
d2es4d1		280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.001

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300	Back information, alignment and structure


class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 25/153 (16%), Positives = 57/153 (37%), Gaps = 10/153 (6%)

Query: 517 LAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEI------NESFEKELSMERE 570
           L + +  D   +  +       AE  +  +      +   I          EKE+ +ER 
Sbjct: 152 LFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERV 211

Query: 571 KIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMS 630
           K +  +  A+   +   +     E  + +  +    +  +ME     R ++ ++ E  ++
Sbjct: 212 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKME---NDRVQLLKEQERTLA 268

Query: 631 NKVEISYEKERINMLRKEAENENQEIARLQYEL 663
            K++   E+      +KE+     EI  LQ ++
Sbjct: 269 LKLQ-EQEQLLKEGFQKESRIMKNEIQDLQTKM 300

PyMOL of d1f5na1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00