Citrus Sinensis ID: 005877

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670--
Protein Sequence
MPELTSTPKLIICLLILSLYPISLKARPFILVLSQDDIKDSAASTDDESAADWDDFGDSESMTEENLDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNAVQAAGDVALPNQHNEHAAAPFN
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHccHHHccccEEEEEcHHHHcccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHcccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHcHcccc
Coil and Loop (DISEMBL)
MPELTSTPKLIICLLILSlypislkarpFILVLSqddikdsaastddesaadwddfgdsesmteenldpgswspvfepsidpgaingsYYITISKMMSAVTNGDVRVMEEATSEVESaamegdpharSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFliskdspviepirihngaeenkgalrksrgeddEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSkaadkgepqsMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAadneeagghyNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAergpwsslSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKygegsmcmgesgfctdaerHQCAHSLWWQASEQGNEHAALLIGdayyygrgtqrDYERAAEAYMHARSQSNAQAMFNLGymhehgqglpLDLHLAKRYYDqalevdpaaklpvTLALTSLWIRKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNAVQAagdvalpnqhnehaaapfn
Flexible Loop (DISEMBL)
MPELTSTPKLIICLLILSLYPISLKARPFILVLSQDDIKDSaastddesaadwddfGDSESMTEENLDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVesaamegdphaRSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIrihngaeenkgalrksrgeDDEAFQILEYQaqkgnagamYKIGLFYYFGLRGLRRDRTKALMWFSkaadkgepqsMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAadneeagghyNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNAVQAAGdvalpnqhnehaaapfn
Low Complexity Region (SEG)
MPELTSTPKLIICLLILSLYPISLKARPFILVLSQDDIKdsaastddesaadwddfgdSESMTEENLDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNAVQAAGDVALPNQHNEHAAAPFN
Disordered region (IsUnstruct)
********KLIICLLILSLYPISLKARPFILVLS*********************************************IDPGAINGSYYITISKMMSAVTNG************************SVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRI*********************FQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA*******MEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMH******AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRER***************************
Disordered Region (DISOPRED)
*****STPKLIICLLILSLYPISLKARPFILVLSQD**************ADWDDFGDSES*****LDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRN***********************
Disordered Region (DISEMBL)
MPELTSTPKLIICLLILSLYPISLKARPFILVLSQDDIK************DWDDFGD************SWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEE***********GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE***********DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNAVQAAGDVALPNQHN********
Disordered Region (DISPRO)
***LTSTPKLIICLLILSLYPISLKARPFILVLSQDDIKDSAA********DWDDFGDSESMTEENLDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNAVQAAGDVALPNQHNEHAAA*FN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPELTSTPKLIICLLILSLYPISLKARPFILVLSQDDIKDSAASTDDESAADWDDFGDSESMTEENLDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNAVQAAGDVALPNQHNEHAAAPFN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	672	2.2.26 [Sep-21-2011]
Q9UBV2	794	Protein sel-1 homolog 1 O	yes	no	0.761	0.644	0.355	2e-77
Q9ESM7	794	Protein sel-1 homolog 1 O	N/A	no	0.773	0.654	0.355	8e-77
Q5TEA6	688	Protein sel-1 homolog 2 O	no	no	0.733	0.716	0.365	1e-76
Q80Z70	794	Protein sel-1 homolog 1 O	yes	no	0.761	0.644	0.353	5e-76
Q9Z2G6	790	Protein sel-1 homolog 1 O	yes	no	0.761	0.648	0.353	7e-76
Q3V172	688	Protein sel-1 homolog 2 O	no	no	0.693	0.677	0.373	2e-73
Q5XI05	688	Protein sel-1 homolog 2 O	no	no	0.712	0.696	0.370	4e-73
Q80TS8	1137	Protein sel-1 homolog 3 O	no	no	0.638	0.377	0.290	6e-33
Q68CR1	1132	Protein sel-1 homolog 3 O	no	no	0.598	0.355	0.294	5e-32
P77234	325	Uncharacterized protein Y	N/A	no	0.421	0.870	0.283	3e-21

>sp|Q9UBV2|SE1L1_HUMAN Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3

 Score =  290 bits (743), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 199/560 (35%), Positives = 297/560 (53%), Gaps = 48/560 (8%)

Query: 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVA 167
           ++ A    E    EG P  ++ LGFLY  G+    ++ KA +Y+ F A GGN+ + M + 
Sbjct: 239 IQAAREMFEKLTEEGSPKGQTALGFLYASGLGVNSSQAKALVYYTFGALGGNLIAHMVLG 298

Query: 168 YTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE---NKGAL 219
           Y Y     + Q   + A+  Y  +A    +   ++  S V++ IR+ +  E    N G L
Sbjct: 299 YRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQRIRLPDEVENPGMNSGML 356

Query: 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP 279
                 +++  Q  ++ A+KG+  A   +G  +  G RG+ ++  +A  +F+ AA+ G  
Sbjct: 357 ------EEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNS 410

Query: 280 QSMEFLGEIYARGAG-VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTK 338
            +M FLG++Y+ G+  V ++   AL +   AA        +G+G  Y+ G GV+  NY  
Sbjct: 411 HAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQV-NYDL 469

Query: 339 AKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMF 398
           A +YF+KAA+     G   LG MYY GIGVKRD K A KYF +A+  GH  AFY LA+M 
Sbjct: 470 ALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMH 529

Query: 399 HTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVA 458
            +G G+ ++ H A  L+K V ERG WS     A  SY  GD   A + Y  +AE GYEVA
Sbjct: 530 ASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAAVIQYLLLAEQGYEVA 589

Query: 459 QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
           QSNAA+ILD+         E+    + E +  A   W +A+ QG   A + +GD ++YG 
Sbjct: 590 QSNAAFILDQR--------EASIVGENETYPRALLHWNRAASQGYTVARIKLGDYHFYGF 641

Query: 519 GTQRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577
           GT  DYE A   Y + +  Q +AQAMFNLGYMHE G G+  D+HLAKR+YD A E  P A
Sbjct: 642 GTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHLAKRFYDMAAEASPDA 701

Query: 578 KLPVTLALTSL-------WIRKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTIL 630
           ++PV LAL  L       +IR+ N      +L              ++ +   E ++ ++
Sbjct: 702 QVPVFLALCKLGVVYFLQYIRETNIRDMFTQLD-------------MDQLLGPEWDLYLM 748

Query: 631 TLFVCLL-TVLYLRERQRRN 649
           T+   LL TV+  R+RQ ++
Sbjct: 749 TIIALLLGTVIAYRQRQHQD 768

May play a role in Notch signaling (By similarity). May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins.
Homo sapiens (taxid: 9606)

>sp|Q9ESM7|SE1L1_MESAU Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1

 Score =  288 bits (738), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 196/552 (35%), Positives = 300/552 (54%), Gaps = 32/552 (5%)

Query: 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVA 167
           ++ A    E    EG P  ++ LGFLY  G+    ++ KA +Y+ F A GGN+ + M + 
Sbjct: 239 IQAAKEMFEKLTEEGSPKGQTALGFLYVSGLGVNSSQAKALVYYTFGALGGNLIAHMVLG 298

Query: 168 YTY---LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE---NKGALRK 221
           Y Y   +      ++V  +  L    V S +      V++ IR+ +  E    N G L  
Sbjct: 299 YRYWAGIGVLQSCESVLTHYRLVANHVASDISLTGGSVVQRIRLPDEVENPGMNSGML-- 356

Query: 222 SRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQS 281
               +++  Q  ++ A+KG+  A   +G  +  G RG+ ++  +A  +F+ AA+ G   +
Sbjct: 357 ----EEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHA 412

Query: 282 MEFLGEIYARGAG-VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAK 340
           M FLG++Y+ G+  V ++   AL +   AA        +G+G  Y+ G G++  NY  A 
Sbjct: 413 MAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGIQV-NYDLAL 471

Query: 341 EYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHT 400
           +YF+KAA+     G   LG MYY GIGVKRD K A KYF +A+  GH  AFY LA+M  +
Sbjct: 472 KYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHAS 531

Query: 401 GVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQS 460
           G G+ ++ H A  L+K V ERG WS     A  SY  GD   A + Y  +AE GYEVAQS
Sbjct: 532 GTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAAVVQYLLLAEQGYEVAQS 591

Query: 461 NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGT 520
           NAA+ILD+         E+    + E +  A   W +A+ QG   A + +GD ++YG GT
Sbjct: 592 NAAFILDQR--------EATIVGENETYPRALLHWNRAASQGYTVARIKLGDYHFYGFGT 643

Query: 521 QRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL 579
             DYE A   Y + +  Q +AQAMFNLGYMHE G G+  D+HLAKR+YD A E  P A++
Sbjct: 644 DVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHLAKRFYDMAAEASPDAQV 703

Query: 580 PVTLALTSLWIRKNNADSFLVRLIDA-LPEVYPRVEAWVENVFMEEGNVTILTLFVCLL- 637
           PV LAL  L +       FL  + +A + +++ +++  ++ +   E ++ ++T+   LL 
Sbjct: 704 PVFLALCKLGVV-----YFLQYIREANIRDIFTQLD--MDQLLGPEWDLYLMTIIALLLG 756

Query: 638 TVLYLRERQRRN 649
           TV+  R+RQ ++
Sbjct: 757 TVIAYRQRQHQD 768

May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins.

Mesocricetus auratus (taxid: 10036)

>sp|Q5TEA6|SE1L2_HUMAN Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2

 Score =  288 bits (736), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 192/525 (36%), Positives = 290/525 (55%), Gaps = 32/525 (6%)

Query: 75  VFEPSIDPGAINGSYYITISKMMSAVTNGD--VRVMEEATSEVESAAMEGDPHARSVLGF 132
           +F  + D G +       + KM  A+  G+  V+ +  A    ES A EG   A++ LGF
Sbjct: 133 LFAKAADMGNLKA-----MEKMADALLFGNFGVQNITAAIQLYESLAKEGSCKAQNALGF 187

Query: 133 L--YGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR-----QDMHDKAVKLYAE 185
           L  YG+GM  E ++ KA +Y+ F + GGN+ S+M + Y YL      Q+  + A+  Y +
Sbjct: 188 LSSYGIGM--EYDQAKALIYYTFGSAGGNMMSQMILGYRYLSGINVLQNC-EVALSYYKK 244

Query: 186 LAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAM 245
           +A+   ++F  S+  PV E +R+    E  +     S   D + +Q  ++ A++G+    
Sbjct: 245 VADYIADTFEKSEGVPV-EKVRL---TERPENLSSNSEILDWDIYQYYKFLAERGDVQIQ 300

Query: 246 YKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARG-AGVERNYTKALE 304
             +G  +  G +GL +D  KAL +F KAA  G   +M F+G++Y  G A V +N   A +
Sbjct: 301 VSLGQLHLIGRKGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFK 360

Query: 305 WLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYK 364
           + + AA +      +G+G LY  G GV   NY +A +YF+KAA+       + LG MYY 
Sbjct: 361 YFSMAASKGNAIGLHGLGLLYFHGKGVPL-NYAEALKYFQKAAEKGWPDAQFQLGFMYYS 419

Query: 365 GIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW 424
           G G+ +D KLA KYF +A+ +G   A Y LAKM+ TG G+ ++   A  LYK V E G W
Sbjct: 420 GSGIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELGHW 479

Query: 425 SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTD 484
           +     A  +Y  GD+  + + Y+ +AE+GYEVAQSN+A+IL+          ++     
Sbjct: 480 AEKFLTAYFAYKDGDIDSSLVQYALLAEMGYEVAQSNSAFILES--------KKANILEK 531

Query: 485 AERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAY-MHARSQSNAQAM 543
            + +  A  LW +A+ QGN  A + IGD +YYG GT++DY+ AA  Y + A    NAQAM
Sbjct: 532 EKMYPMALLLWNRAAIQGNAFARVKIGDYHYYGYGTKKDYQTAATHYSIAANKYHNAQAM 591

Query: 544 FNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSL 588
           FNL YM+EHG G+  D+HLA+R YD A +  P A +PV  A+  L
Sbjct: 592 FNLAYMYEHGLGITKDIHLARRLYDMAAQTSPDAHIPVLFAVMKL 636

Homo sapiens (taxid: 9606)

>sp|Q80Z70|SE1L1_RAT Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Sel1l PE=2 SV=2

 Score =  286 bits (731), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 198/560 (35%), Positives = 296/560 (52%), Gaps = 48/560 (8%)

Query: 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVA 167
           ++ A    E    EG P  ++ LGFLY  G+    ++ KA +Y+ F A GGN+ + M + 
Sbjct: 239 IQAAKEMFEKLTEEGSPKGQTGLGFLYASGLGVNSSQAKALVYYTFGALGGNLIAHMVLG 298

Query: 168 YTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE---NKGAL 219
           Y Y     + Q   + A+  Y  +A    +   ++  S V++ IR+ +  E    N G L
Sbjct: 299 YRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQRIRLPDEVENPGMNSGML 356

Query: 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP 279
                 +++  Q  ++ A+KG+  A   +G  +  G RG+ ++  +A  +F+ AA+ G  
Sbjct: 357 ------EEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNS 410

Query: 280 QSMEFLGEIYARGAG-VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTK 338
            +M FLG++Y+ G+  V ++   AL +   AA        +G+G  Y+ G GV+  NY  
Sbjct: 411 HAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQV-NYDL 469

Query: 339 AKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMF 398
           A +YF+KAA+     G   LG MYY GIGVKRD K A KYF +A+  GH  AFY LA+M 
Sbjct: 470 ALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMH 529

Query: 399 HTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVA 458
            +G G+ ++ H A  L+K V ERG WS     A  SY   D   A + Y  +AE GYEVA
Sbjct: 530 ASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDDDYNAAVVQYLLLAEQGYEVA 589

Query: 459 QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
           QSNAA+ILD+         E+    + E +  A   W +A+ QG   A + +GD ++YG 
Sbjct: 590 QSNAAFILDQR--------EATIVGENETYPRALLHWNRAASQGYTVARIKLGDYHFYGF 641

Query: 519 GTQRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577
           GT  DYE A   Y + +  Q +AQAMFNLGYMHE G G+  D+HLAKR+YD A E  P A
Sbjct: 642 GTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHLAKRFYDMAAEASPDA 701

Query: 578 KLPVTLALTSL-------WIRKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTIL 630
           ++PV LAL  L       +IR+ N      +L              ++ +   E ++ ++
Sbjct: 702 QVPVFLALCKLGVVYFLQYIREANIRDLFTQLD-------------MDQLLGPEWDLYLM 748

Query: 631 TLFVCLL-TVLYLRERQRRN 649
           T+   LL TV+  R+RQ ++
Sbjct: 749 TIIALLLGTVIAYRQRQHQD 768

May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z2G6|SE1L1_MOUSE Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l PE=2 SV=2

 Score =  285 bits (730), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 198/560 (35%), Positives = 296/560 (52%), Gaps = 48/560 (8%)

Query: 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVA 167
           ++ A    E    EG P  ++ LGFLY  G+    ++ KA +Y+ F A GGN+ + M + 
Sbjct: 235 IQAAKEMFEKLTEEGSPKGQTGLGFLYASGLGVNSSQAKALVYYTFGALGGNLIAHMILG 294

Query: 168 YTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE---NKGAL 219
           Y Y     + Q   + A+  Y  +A    +   ++  S V++ IR+ +  E    N G L
Sbjct: 295 YRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQRIRLPDEVENPGMNSGML 352

Query: 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP 279
                 +++  Q  ++ A+KG+  A   +G  +  G RG+ ++  +A  +F+ AA+ G  
Sbjct: 353 ------EEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNS 406

Query: 280 QSMEFLGEIYARGAG-VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTK 338
            +M FLG++Y+ G+  V ++   AL +   AA        +G+G  Y+ G GV+  NY  
Sbjct: 407 HAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQV-NYDL 465

Query: 339 AKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMF 398
           A +YF+KAA+     G   LG MYY GIGVKRD K A KYF +A+  GH  AFY LA+M 
Sbjct: 466 ALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMH 525

Query: 399 HTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVA 458
            +G G+ ++ H A  L+K V ERG WS     A  SY   D   A + Y  +AE GYEVA
Sbjct: 526 ASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDEDYNAAVVQYLLLAEQGYEVA 585

Query: 459 QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
           QSNAA+ILD+         E+    + E +  A   W +A+ QG   A + +GD ++YG 
Sbjct: 586 QSNAAFILDQR--------EATIVGENETYPRALLHWNRAASQGYTVARIKLGDYHFYGF 637

Query: 519 GTQRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA 577
           GT  DYE A   Y + +  Q +AQAMFNLGYMHE G G+  D+HLAKR+YD A E  P A
Sbjct: 638 GTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHLAKRFYDMAAEASPDA 697

Query: 578 KLPVTLALTSL-------WIRKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTIL 630
           ++PV LAL  L       +IR+ N      +L              ++ +   E ++ ++
Sbjct: 698 QVPVFLALCKLGVVYFLQYIREANIRDLFTQLD-------------MDQLLGPEWDLYLM 744

Query: 631 TLFVCLL-TVLYLRERQRRN 649
           T+   LL TV+  R+RQ ++
Sbjct: 745 TIIALLLGTVIAYRQRQHQD 764

May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins.

Mus musculus (taxid: 10090)

>sp|Q3V172|SE1L2_MOUSE Protein sel-1 homolog 2 OS=Mus musculus GN=Sel1l2 PE=2 SV=1

 Score =  277 bits (708), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 184/492 (37%), Positives = 278/492 (56%), Gaps = 26/492 (5%)

Query: 108 MEEATSEV---ESAAMEGDPHARSVLGFL--YGMGMMRERNKGKAFLYHHFAAEGGNIQS 162
           M+  T+ +   ES A EG   A++ LGFL  YG+GM  E ++ KA +Y+ F + GG++ S
Sbjct: 160 MQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGM--EYDQAKALIYYTFGSAGGSMMS 217

Query: 163 KMAVAYTYLR--QDMHDKAVKL--YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218
           +M + Y YL     + +  V L  Y ++A+   +    S+  PV E +R+    E  +  
Sbjct: 218 QMILGYRYLSGINVLQNCEVALNHYKKVADYIADKLEKSEGIPV-EKVRL---TERPENL 273

Query: 219 LRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE 278
              S   D + +Q  ++ A++G+      +G  +  G +GL +D +KAL +F KAA  G 
Sbjct: 274 SSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDYSKALYYFLKAAKAGS 333

Query: 279 PQSMEFLGEIYARG-AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYT 337
             +M F+G++Y  G A   +N   A ++ + AA +      +G+G LY  G GV   NY 
Sbjct: 334 ANAMAFIGKMYFEGNAAAPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPV-NYG 392

Query: 338 KAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397
           +A +YF+KAA+       + LG MYY G GV +D KLA KYF +A+ +G   A Y LA+M
Sbjct: 393 EALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSGQPLAIYYLAEM 452

Query: 398 FHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEV 457
           + TG G+ ++   A  LYK V E G W+     A  +Y  GD+  + + Y+ +AE+GYEV
Sbjct: 453 YATGTGVLRSCRTAVELYKGVCELGHWAEKFLTAYFAYKDGDIDSSLIQYALLAEMGYEV 512

Query: 458 AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYG 517
           AQSN+A+IL+   + +  +G+       + +  A  LW +A+ QGN  A + IGD +YYG
Sbjct: 513 AQSNSAFILE--SKKAKILGKE------KLYPMALLLWNRAAIQGNAFARVKIGDYHYYG 564

Query: 518 RGTQRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA 576
            GT++DYE AA  Y + A    +AQAMFNL YM+EHG G+  D+HLA+R YD A +  P 
Sbjct: 565 YGTKKDYETAATHYSIAADKHHSAQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQTSPD 624

Query: 577 AKLPVTLALTSL 588
           A +PV  AL  L
Sbjct: 625 AHIPVFFALMKL 636

Mus musculus (taxid: 10090)

>sp|Q5XI05|SE1L2_RAT Protein sel-1 homolog 2 OS=Rattus norvegicus GN=Sel1l2 PE=2 SV=1

 Score =  276 bits (706), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 188/508 (37%), Positives = 285/508 (56%), Gaps = 29/508 (5%)

Query: 93  ISKMMSAVTNGDVRVMEEATSEV---ESAAMEGDPHARSVLGFL--YGMGMMRERNKGKA 147
           + KM  A+  G    M+  T+ +   ES A EG   A++ LGFL  YG+GM  E ++ KA
Sbjct: 146 MEKMADALLFGSFG-MQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGM--EYDQAKA 202

Query: 148 FLYHHFAAEGGNIQSKMAVAYTYLR-----QDMHDKAVKLYAELAEIAVNSFLISKDSPV 202
            +Y+ F + GG++ S+M + Y YL      Q+  + A+  Y ++A+   +    S+  PV
Sbjct: 203 LIYYTFGSAGGSMMSQMILGYRYLSGINVLQNC-EVALNHYKKVADYIADKLEKSEGIPV 261

Query: 203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRD 262
            E +R+    E  +     S   D + +Q  ++ A++G+      +G  +  G +GL +D
Sbjct: 262 -EKVRL---TERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQD 317

Query: 263 RTKALMWFSKAADKGEPQSMEFLGEIYARG-AGVERNYTKALEWLTHAARQQLYSAYNGI 321
            +KAL +F KAA  G   +M F+G++Y  G A   +N   A ++ + AA +      +G+
Sbjct: 318 YSKALYYFLKAAKAGSANAMAFIGKMYLEGNAAAPQNNATAFKYFSMAASKGNAIGLHGL 377

Query: 322 GYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381
           G LY  G GV   NY +A +YF+KAA+       ++LG MYY G GV +D KLA KYF +
Sbjct: 378 GLLYFHGKGVPV-NYGEALKYFQKAAEKGWPNAQFHLGFMYYSGSGVWKDYKLAFKYFYL 436

Query: 382 AANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVG 441
           A+ +G   A Y LA+M+ TG G+ ++   A   YK V E G W+     A  +Y  GDV 
Sbjct: 437 ASQSGQPLAIYYLAEMYATGTGVLRSCRTAVEPYKGVCELGHWAEKFLTAYFAYKDGDVD 496

Query: 442 KAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501
            + + Y+ +AE+GYEVAQSN+A+IL+   + +  +G+       + +  A  LW +A+ Q
Sbjct: 497 SSLIQYALLAEMGYEVAQSNSAFILE--SKKAKILGKE------KMYPMALLLWNRAAIQ 548

Query: 502 GNEHAALLIGDAYYYGRGTQRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDL 560
           GN  A + IGD +YYG GT++DYE AA  Y + A    +AQAMFNL YM+EHG G+  D+
Sbjct: 549 GNAFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHHSAQAMFNLAYMYEHGLGIAQDI 608

Query: 561 HLAKRYYDQALEVDPAAKLPVTLALTSL 588
           HLA+R YD A +  P A +PV  AL  L
Sbjct: 609 HLARRLYDMAAQTSPDAHIPVFFALMKL 636

Rattus norvegicus (taxid: 10116)

>sp|Q80TS8|SE1L3_MOUSE Protein sel-1 homolog 3 OS=Mus musculus GN=Sel1l3 PE=2 SV=3

 Score =  142 bits (359), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 141/486 (29%), Positives = 223/486 (45%), Gaps = 57/486 (11%)

Query: 130  LGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYT-YLRQDMHDKAVKL-YAELA 187
            L   Y  G+   R++ +  LY     +G    S M + Y  Y   D +    +L YA  +
Sbjct: 581  LTVFYETGLNGPRDQLQGMLYSLVGGQGSERLSSMNLGYKHYQGVDSYPLDWELSYAYYS 640

Query: 188  EIAVNSFL----ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAG 243
             IA  + L    +  D   +E IR+     ++   L+    ED + F  L+++A +GNA 
Sbjct: 641  NIATKTPLDQHTLQGDQAYVETIRL-----KDDEILKVQTKEDGDVFMWLKHEATRGNAA 695

Query: 244  AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEF-LGEIYARGAGVERNYTKA 302
            A  ++    ++G +G+ ++   A+ W++K A + E  ++ +    +  +G GV++N   A
Sbjct: 696  AQQRLAQMLFWGQQGVAKNPEAAIEWYAKGALETEDPALIYDYAIVLFKGQGVKKNRRLA 755

Query: 303  LEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMY 362
            LE +  AA + L+ A NG+G+ Y K     +KNY KA +Y+ KA +       YNLGV+Y
Sbjct: 756  LELMKKAASKGLHQAVNGLGWYYHKF----RKNYAKAAKYWLKAEEMGNPDASYNLGVLY 811

Query: 363  YKGI--GVK-RDVKLACKYFLVAANAGHQKAFYQLAKMFHTG--VGLKKNLHMATALYKL 417
              GI  GV  R++ LA +YF  AA  GH +     +  + TG      ++   A    K 
Sbjct: 812  LDGIFPGVPGRNLTLAGEYFHKAAQGGHIEGTLWCSLYYITGNLETFPRDPEKAVVWAKH 871

Query: 418  VAER-GPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGE----- 471
            VAE+ G    + R  L +YL+G   +A L Y   AE G EV+Q+N A I ++  +     
Sbjct: 872  VAEKNGYLGHVIRKGLNAYLEGLWHEALLYYVLAAETGIEVSQTNLAHICEERPDLAGRY 931

Query: 472  -GSMCMGE----SGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQ-RDYE 525
             G  C+      S F  DA                    A L +GD YYYG   Q +D E
Sbjct: 932  LGVNCVWRYYNFSVFQIDAP-----------------SFAYLKMGDLYYYGHQNQSQDLE 974

Query: 526  RAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLAL 585
             + + Y  A    ++Q  FNL  + E G  +P        +  + LE+DP+     T  L
Sbjct: 975  LSVQMYAQAALDGDSQGFFNLAALIEEGAVIP-------HHILEFLEIDPSLHSSNTSIL 1027

Query: 586  TSLWIR 591
              L+ R
Sbjct: 1028 QELYER 1033

Mus musculus (taxid: 10090)

>sp|Q68CR1|SE1L3_HUMAN Protein sel-1 homolog 3 OS=Homo sapiens GN=SEL1L3 PE=1 SV=2

 Score =  139 bits (351), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 209/452 (46%), Gaps = 50/452 (11%)

Query: 130  LGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYT-YLRQDMHDKAVKL-YAELA 187
            L   Y  G+   R++ +  LY     +G    S M + Y  Y   D +    +L YA  +
Sbjct: 576  LAVFYETGLNVPRDQLQGMLYSLVGGQGSERLSSMNLGYKHYQGIDNYPLDWELSYAYYS 635

Query: 188  EIAVNSFL----ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAG 243
             IA  + L    +  D   +E IR+     ++   L+    ED + F  L+++A +GNA 
Sbjct: 636  NIATKTPLDQHTLQGDQAYVETIRL-----KDDEILKVQTKEDGDVFMWLKHEATRGNAA 690

Query: 244  AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEF-LGEIYARGAGVERNYTKA 302
            A  ++    ++G +G+ ++   A+ W++K A + E  ++ +    +  +G GV++N   A
Sbjct: 691  AQQRLAQMLFWGQQGVAKNPEAAIEWYAKGALETEDPALIYDYAIVLFKGQGVKKNRRLA 750

Query: 303  LEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMY 362
            LE +  AA + L+ A NG+G+ Y K     KKNY KA +Y+ KA +       YNLGV++
Sbjct: 751  LELMKKAASKGLHQAVNGLGWYYHKF----KKNYAKAAKYWLKAEEMGNPDASYNLGVLH 806

Query: 363  YKGI--GVK-RDVKLACKYFLVAANAGHQKAFYQLAKMFHTG--VGLKKNLHMATALYKL 417
              GI  GV  R+  LA +YF  AA  GH +     +  + TG      ++   A    K 
Sbjct: 807  LDGIFPGVPGRNQTLAGEYFHKAAQGGHMEGTLWCSLYYITGNLETFPRDPEKAVVWAKH 866

Query: 418  VAER-GPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGE----- 471
            VAE+ G    + R  L +YL+G   +A L Y   AE G EV+Q+N A I ++  +     
Sbjct: 867  VAEKNGYLGHVIRKGLNAYLEGSWHEALLYYVLAAETGIEVSQTNLAHICEERPDLARRY 926

Query: 472  -GSMCMGE----SGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQ-RDYE 525
             G  C+      S F  DA                    A L +GD YYYG   Q +D E
Sbjct: 927  LGVNCVWRYYNFSVFQIDAP-----------------SFAYLKMGDLYYYGHQNQSQDLE 969

Query: 526  RAAEAYMHARSQSNAQAMFNLGYMHEHGQGLP 557
             + + Y  A    ++Q  FNL  + E G  +P
Sbjct: 970  LSVQMYAQAALDGDSQGFFNLALLIEEGTIIP 1001

Homo sapiens (taxid: 9606)

>sp|P77234|YBEQ_ECOLI Uncharacterized protein YbeQ OS=Escherichia coli (strain K12) GN=ybeQ PE=4 SV=2

 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 153/335 (45%), Gaps = 52/335 (15%)

Query: 231 QILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYA 290
           +I+E +A+KG+  A Y +G +Y         D  KA  W   AA++G  ++   LG+ Y 
Sbjct: 15  EIIE-RAEKGDCEAQYIVGFYYNRDSAIDSPDDEKAFYWLKLAAEQGHCEAQYSLGQKYT 73

Query: 291 RGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE 350
                 ++  +A+ WL  AA Q    A N +G+   +G   E  NY +A  +++ AA++ 
Sbjct: 74  EDKSRHKDNEQAIFWLKKAALQGHTFASNALGWTLDRG---EAPNYKEAVVWYQIAAESG 130

Query: 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHM 410
            +    NLG MY  G GV +D  LA  ++  AA  GH  A   LA ++  G G+ +N  +
Sbjct: 131 MSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNLADLYEDGKGVAQNKTL 190

Query: 411 ATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYG 470
           A                                   Y + A+ G   AQ   AW  +  G
Sbjct: 191 AA--------------------------------FWYLKSAQQGNRHAQFQIAWDYNA-G 217

Query: 471 EGSMCMGESGFCTDAERHQCAHSLWW--QASEQGNEHAALLIGDAYYYGRGTQRDYERAA 528
           EG           D +  Q   +++W  +A+ QG+  A + IG  Y +G+G ++DY+ A 
Sbjct: 218 EG----------VDQDYKQ---AMYWYLKAAAQGSVGAYVNIGYMYKHGQGVEKDYQAAF 264

Query: 529 EAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLA 563
           E +  A   ++A A +NL  M+ +G+G P+DL  A
Sbjct: 265 EWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQA 299

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	672
255579265	681	conserved hypothetical protein [Ricinus	0.982	0.969	0.800	0.0
224135581	683	predicted protein [Populus trichocarpa]	0.980	0.964	0.769	0.0
118489046	683	unknown [Populus trichocarpa x Populus d	0.980	0.964	0.769	0.0
224118634	682	predicted protein [Populus trichocarpa]	0.983	0.969	0.759	0.0
297850220	678	hypothetical protein ARALYDRAFT_889238 [	0.952	0.943	0.755	0.0
351727705	670	SEL-1 precursor [Glycine max] gi|6813107	0.968	0.971	0.759	0.0
356524696	671	PREDICTED: protein sel-1 homolog 2-like	0.949	0.950	0.768	0.0
18394588	678	Hr.3 like protein [Arabidopsis thaliana]	0.952	0.943	0.750	0.0
449439463	678	PREDICTED: protein sel-1 homolog 1-like	0.974	0.966	0.746	0.0
225456173	674	PREDICTED: protein sel-1 homolog 2 [Viti	0.961	0.958	0.781	0.0

>gi|255579265|ref|XP_002530478.1| conserved hypothetical protein [Ricinus communis] gi|223529975|gb|EEF31901.1| conserved hypothetical protein [Ricinus communis]

 Score = 1095 bits (2831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/673 (80%), Positives = 597/673 (88%), Gaps = 13/673 (1%)

Query: 7   TPKLIICLLILSLYPISLKARPFILVLSQDDIKDSAASTDDESAA-----DWDDFGDSES 61
           T +    L+I+SL P+SL ARPF+L+LSQDD+KD+ A+ DD S+A     +WD+FGDS+S
Sbjct: 7   TYRFTFSLIIVSLLPLSLTARPFVLLLSQDDLKDAPATVDDSSSATDSPPEWDEFGDSDS 66

Query: 62  MTEENLDPGSWSPVFEPSIDPGAIN------GSYYITISKMMSAVTNGDVRVMEEATSEV 115
             E  LDPGSW P+FEP     + +        YY  + KM+++V++G VR+MEEA +E+
Sbjct: 67  KPEHELDPGSWRPIFEPDSSSSSSSVEDSEMAEYYSGVEKMLASVSDGKVRLMEEAAAEI 126

Query: 116 ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDM 175
           ESAA+ G+PHA+SVLGFLYG+G M+ER+K KAFLYHHFAAE GN+QSKMA+A+TY RQDM
Sbjct: 127 ESAAVSGNPHAQSVLGFLYGLGQMKERDKAKAFLYHHFAAESGNMQSKMALAFTYSRQDM 186

Query: 176 HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235
           HDKAVKLYAELAE+AVNSFLISKDSPVIEP+RIHNGAEENK ALRKSRGE+DE FQILEY
Sbjct: 187 HDKAVKLYAELAEVAVNSFLISKDSPVIEPVRIHNGAEENKEALRKSRGEEDEDFQILEY 246

Query: 236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGV 295
           QAQKGNAGAMYKIGLFYYFGLRGLRRD  KAL WFSKA  KGEP+SME LGEIYARGAGV
Sbjct: 247 QAQKGNAGAMYKIGLFYYFGLRGLRRDHAKALSWFSKAVKKGEPRSMELLGEIYARGAGV 306

Query: 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH 355
           ERNYTKALEWLT A++QQLYSAYNG+GYLYVKGYGVEK NYTKAKEYFEKAA NEEAGGH
Sbjct: 307 ERNYTKALEWLTLASKQQLYSAYNGMGYLYVKGYGVEK-NYTKAKEYFEKAAHNEEAGGH 365

Query: 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALY 415
           YNLGVMY KGIGVKRDVKLACKYF+VAANAG  KAFYQLAKMFHTGVGLKK+L MATALY
Sbjct: 366 YNLGVMYLKGIGVKRDVKLACKYFIVAANAGQPKAFYQLAKMFHTGVGLKKDLVMATALY 425

Query: 416 KLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMC 475
           KLVAERGPWS+LSRWALESYLKGDVGKAFLLY+RMAE+GYE+AQSNAAWILDKYGE SMC
Sbjct: 426 KLVAERGPWSTLSRWALESYLKGDVGKAFLLYARMAEMGYEIAQSNAAWILDKYGERSMC 485

Query: 476 MGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHAR 535
           MGESGFCTDAERHQ AHSLWWQASEQGNEHAALLIGDAYYYGRGT+RDYERAAEAYMHA+
Sbjct: 486 MGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTERDYERAAEAYMHAK 545

Query: 536 SQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNA 595
           SQSNAQAMFNLGYMHEHGQGLP DLHLAKRYYDQALE+DPAAKLPVTLALTSLW+R+N A
Sbjct: 546 SQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDQALEIDPAAKLPVTLALTSLWVRRNYA 605

Query: 596 DSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNAVQAAG 655
           DSFLV LID+LP VYP+VEAWVENV +EEGN TILTLFVCLLTVLYLRERQRR+A    G
Sbjct: 606 DSFLVNLIDSLPGVYPKVEAWVENVILEEGNATILTLFVCLLTVLYLRERQRRHA-GGVG 664

Query: 656 DVALPNQHNEHAA 668
           + A+P Q  E AA
Sbjct: 665 EAAVPQQPLELAA 677

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135581|ref|XP_002322109.1| predicted protein [Populus trichocarpa] gi|222869105|gb|EEF06236.1| predicted protein [Populus trichocarpa]

 Score = 1077 bits (2785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/682 (76%), Positives = 591/682 (86%), Gaps = 23/682 (3%)

Query: 10  LIICLLILSLYPISLKARPFILVLSQDDIKD--SAASTDD----ESAADWDDFGDSESMT 63
           L + LLI SL P SL A PF+L+LSQDD+KD  S+A+T D    ES  +WD+FGDS+S  
Sbjct: 6   LTLSLLIFSLLPPSLLAGPFVLILSQDDLKDIPSSATTTDADPAESLPEWDEFGDSDSKP 65

Query: 64  EENLDPGSWSPVFEPSIDPGAINGS------------YYITISKMMSAVTNGDVRVMEEA 111
           E  L+PGSW P+FEP     A+N S            YY  + KM+SAV++G+V VMEE+
Sbjct: 66  EHELEPGSWRPIFEPD----AVNSSTSESKLDTEMEQYYSAVEKMLSAVSDGEVGVMEES 121

Query: 112 TSEVES-AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTY 170
            +E+E  A+++G+ HA+SVLGFLYG+G ++ERNK KAFLYH+FAA+GGN+QSK+A+AYTY
Sbjct: 122 VAEIEELASVKGNSHAQSVLGFLYGLGQIKERNKAKAFLYHNFAAKGGNLQSKLAIAYTY 181

Query: 171 LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAF 230
            RQ M++KAVKLYAELAE+AVNSFLISK SPVIEP+RIHNGAEENK ALRKSRGEDD+ F
Sbjct: 182 YRQHMYEKAVKLYAELAEVAVNSFLISKYSPVIEPVRIHNGAEENKEALRKSRGEDDDVF 241

Query: 231 QILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYA 290
           QILEYQAQKGNAGAMYKIG FYYFGLRGLRRD  KAL WFSKA +KGEP+SME LGEIYA
Sbjct: 242 QILEYQAQKGNAGAMYKIGYFYYFGLRGLRRDHAKALAWFSKAVEKGEPRSMELLGEIYA 301

Query: 291 RGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE 350
           RGAGVERNYTKALEWLT AA+QQLYSAYNG+GYLYVKGYGVEKKNYTKAKEYFE+AADNE
Sbjct: 302 RGAGVERNYTKALEWLTLAAKQQLYSAYNGMGYLYVKGYGVEKKNYTKAKEYFERAADNE 361

Query: 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHM 410
           +AGGHYNLGV++ KGIGVKRDVKLAC+YF+VAANAG  KAFYQLAKMFH GVGLKKNL M
Sbjct: 362 DAGGHYNLGVIHLKGIGVKRDVKLACQYFIVAANAGQPKAFYQLAKMFHKGVGLKKNLPM 421

Query: 411 ATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYG 470
           A  LYKLVAERGPW+SLSRWALESYLKG+VGKA LLYSRMAELGYE+AQSNAAWILDKY 
Sbjct: 422 AIGLYKLVAERGPWNSLSRWALESYLKGNVGKASLLYSRMAELGYEIAQSNAAWILDKYA 481

Query: 471 EGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEA 530
           E SMC+GESGFCTD+ERHQ AHSLWW+ASEQGNEHAALLIGDAYYYGRGT RDYERAAEA
Sbjct: 482 EHSMCLGESGFCTDSERHQRAHSLWWEASEQGNEHAALLIGDAYYYGRGTVRDYERAAEA 541

Query: 531 YMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWI 590
           YMHA+SQSNAQAMFNLGYMHEHG+GLP DLHLAKRYYDQALE+D AAKLPVTLALTSLWI
Sbjct: 542 YMHAKSQSNAQAMFNLGYMHEHGKGLPFDLHLAKRYYDQALEIDSAAKLPVTLALTSLWI 601

Query: 591 RKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNA 650
           RKN ADS +V +ID+LPE YP++EAWVENV +EEGN TILTLFVCLLTVLY RERQRRNA
Sbjct: 602 RKNYADSVMVHMIDSLPEFYPKIEAWVENVILEEGNATILTLFVCLLTVLYFRERQRRNA 661

Query: 651 VQAAGDVALPNQHNEHAAAPFN 672
             AAG+V +P+Q  EHA    N
Sbjct: 662 GVAAGEVGIPDQPIEHAPPAPN 683

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489046|gb|ABK96330.1| unknown [Populus trichocarpa x Populus deltoides]

 Score = 1077 bits (2784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/682 (76%), Positives = 593/682 (86%), Gaps = 23/682 (3%)

Query: 10  LIICLLILSLYPISLKARPFILVLSQDDIKD--SAASTDD----ESAADWDDFGDSESMT 63
           L + LLI SL P SL A P +L+LSQDD+KD  S+A+T D    ES  +WD+FGDS+S  
Sbjct: 6   LTLSLLIFSLLPPSLLAGPVVLILSQDDLKDIPSSATTTDADPAESLPEWDEFGDSDSKP 65

Query: 64  EENLDPGSWSPVFEPSIDPGAINGS------------YYITISKMMSAVTNGDVRVMEEA 111
           E  L+PGSWSP+FEP     A+N S            YY  + KM+SAV++G+V VMEE+
Sbjct: 66  EHELEPGSWSPIFEPD----AVNSSTSESKLDTEMEQYYSAVEKMLSAVSDGEVGVMEES 121

Query: 112 TSEVES-AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTY 170
            +E+E  A+++G+ HA+SVLGFLYG+G ++ERNK KAFLYH+FAA+GGN+QSK+A+AYTY
Sbjct: 122 VAEIEELASVKGNSHAQSVLGFLYGLGQIKERNKAKAFLYHNFAAKGGNLQSKLAIAYTY 181

Query: 171 LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAF 230
            RQ M++KAVKLYAELAE+AVNSFLISK SPVIEP+RIHNGAEENK AL+KSRGEDD+ F
Sbjct: 182 YRQHMYEKAVKLYAELAEVAVNSFLISKYSPVIEPVRIHNGAEENKEALKKSRGEDDDVF 241

Query: 231 QILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYA 290
           QILEYQAQKGNAGAMYKIG FYYFGLRGLRRD  KAL WFSKA +KGEP+SME LGEIYA
Sbjct: 242 QILEYQAQKGNAGAMYKIGYFYYFGLRGLRRDHAKALAWFSKAVEKGEPRSMELLGEIYA 301

Query: 291 RGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE 350
           RGAGVERNYTKALEWLT AA+QQLYSAYNG+GYLYVKGYGVEKKNYTKAKEYFE+AADNE
Sbjct: 302 RGAGVERNYTKALEWLTLAAKQQLYSAYNGMGYLYVKGYGVEKKNYTKAKEYFERAADNE 361

Query: 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHM 410
           +AGGHYNLGV++ KGIGVKRDVKLAC+YF+VAANAG  KAFYQLAKMFH GVGLKKNL M
Sbjct: 362 DAGGHYNLGVIHLKGIGVKRDVKLACQYFIVAANAGQPKAFYQLAKMFHKGVGLKKNLPM 421

Query: 411 ATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYG 470
           AT LYKLVAERGPW+SLSRWALESYLKG+VGKA LLYSRMAELGYE+AQSNAAWILDKY 
Sbjct: 422 ATGLYKLVAERGPWNSLSRWALESYLKGNVGKASLLYSRMAELGYEIAQSNAAWILDKYA 481

Query: 471 EGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEA 530
           E SMC+GESGFCTD+ERHQ AHSLWW+ASEQGNEHAALLIGDAYYYGRGT RDYERAAEA
Sbjct: 482 EHSMCVGESGFCTDSERHQRAHSLWWEASEQGNEHAALLIGDAYYYGRGTVRDYERAAEA 541

Query: 531 YMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWI 590
           YMHA+SQSNAQAMFNLGYMHEHG+GLP DL+LAKRYYDQALE+D AAKLPVTLALTSLWI
Sbjct: 542 YMHAKSQSNAQAMFNLGYMHEHGKGLPFDLNLAKRYYDQALEIDSAAKLPVTLALTSLWI 601

Query: 591 RKNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNA 650
           RKN ADSF+V +ID+LPE YP++EAWVENV +EEGN TILTLFVCLLTVLY RERQRRNA
Sbjct: 602 RKNYADSFMVYVIDSLPEFYPKIEAWVENVILEEGNATILTLFVCLLTVLYFRERQRRNA 661

Query: 651 VQAAGDVALPNQHNEHAAAPFN 672
             AAG+V +P+Q  EHA    N
Sbjct: 662 GVAAGEVGIPDQPIEHAPPAPN 683

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118634|ref|XP_002317869.1| predicted protein [Populus trichocarpa] gi|222858542|gb|EEE96089.1| predicted protein [Populus trichocarpa]

 Score = 1056 bits (2732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/681 (75%), Positives = 588/681 (86%), Gaps = 20/681 (2%)

Query: 9   KLIICLLILSLYPISLKARPFILVLSQDDIKD-----SAASTD---DESAADWDDFGDSE 60
           KL + LLI SL P+SL AR + L+LSQ+D+KD     +  S+D   +ES  +WD+FGDS+
Sbjct: 5   KLTLSLLIFSLLPLSLHARQYFLILSQEDLKDIPSSPTTTSSDVDPNESPPEWDEFGDSD 64

Query: 61  SMTEENLDPGSWSPVFEPSIDPGAINGS--------YYITISKMMSAVTNGDVRVMEEAT 112
           S  E  LDPGSW P+FEP     + + S        YY  + KM SAV++ +V+V+EEA 
Sbjct: 65  SKPEHELDPGSWRPIFEPDATTSSTSASKLDPEMEQYYSAVEKMFSAVSDSEVKVVEEAV 124

Query: 113 SEVESA-AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYL 171
           +E+E    ++G+ HA+SVLGFLYG+G ++ER+K KAFLYHHFAA+GG++QSK A+AYTY 
Sbjct: 125 AEIEELATVKGNSHAQSVLGFLYGLGQIKERDKAKAFLYHHFAADGGSLQSKSALAYTYY 184

Query: 172 RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQ 231
           RQ M++ AVKLYAELAE+AVNSFLISKDSPVIEP+RIHNGAEENK ALRKSRGEDD+ FQ
Sbjct: 185 RQQMYENAVKLYAELAEVAVNSFLISKDSPVIEPVRIHNGAEENKEALRKSRGEDDDVFQ 244

Query: 232 ILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYAR 291
           ILEYQAQKGNAGAM+KIG F+YFGLRGLRRD  KAL WFSKA +KGEP+SME LGEIYAR
Sbjct: 245 ILEYQAQKGNAGAMFKIGYFHYFGLRGLRRDHAKALAWFSKAVEKGEPRSMELLGEIYAR 304

Query: 292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE 351
           GAGVERNYTKALEWLT AA+QQLYSAYNG+GYLYVKGYGV+KKNY+KAKEYFE+AAD+E+
Sbjct: 305 GAGVERNYTKALEWLTLAAQQQLYSAYNGMGYLYVKGYGVQKKNYSKAKEYFERAADHED 364

Query: 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMA 411
           AGGHYNLGVM+ KGIGVKRDV+LAC+YF+VAANAG  KAFYQLAKMFH GVGLKKNL MA
Sbjct: 365 AGGHYNLGVMHLKGIGVKRDVRLACQYFIVAANAGQPKAFYQLAKMFHMGVGLKKNLLMA 424

Query: 412 TALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGE 471
           TALYKLVAERGPW+SLSRWALESYLKGDVGKAFLLYSRMAELGYE+AQSNAAWILDKY E
Sbjct: 425 TALYKLVAERGPWNSLSRWALESYLKGDVGKAFLLYSRMAELGYEIAQSNAAWILDKYAE 484

Query: 472 GSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAY 531
           GSMCMGESGFCTD+ERHQ AH LWWQASEQGNEHAALLIGDAYYYGRGT+RDYERAAEAY
Sbjct: 485 GSMCMGESGFCTDSERHQRAHFLWWQASEQGNEHAALLIGDAYYYGRGTERDYERAAEAY 544

Query: 532 MHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIR 591
           MHA+SQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE+DPAAKLPVTLAL SLWIR
Sbjct: 545 MHAKSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEIDPAAKLPVTLALASLWIR 604

Query: 592 KNNADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNAV 651
           KN ADSF+V +ID+LP VYP+++AWVEN+ +EEGN  ILTLFVCLLTVLY RERQRRN  
Sbjct: 605 KNYADSFMVHVIDSLPGVYPKIKAWVENIILEEGNAAILTLFVCLLTVLYFRERQRRN-- 662

Query: 652 QAAGDVALPNQHNEHAAAPFN 672
            AA +V +  QH  HA A  N
Sbjct: 663 -AAVEVGIQGQHIHHAPAALN 682

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850220|ref|XP_002892991.1| hypothetical protein ARALYDRAFT_889238 [Arabidopsis lyrata subsp. lyrata] gi|297338833|gb|EFH69250.1| hypothetical protein ARALYDRAFT_889238 [Arabidopsis lyrata subsp. lyrata]

 Score = 1031 bits (2665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/641 (75%), Positives = 555/641 (86%), Gaps = 1/641 (0%)

Query: 10  LIICLLILSLYPISLKARPFILVLSQDDIKDSAASTDDESAADWDDFGDSESMTEENLDP 69
           +I+ LL+ S   +S+ ARP +LVLS DD+           ++D+D+FG+SE  +EE LDP
Sbjct: 9   VILSLLVFSFVELSVHARPVVLVLSNDDLNSGGDDNGVGESSDFDEFGESEPKSEEELDP 68

Query: 70  GSWSPVFEPSIDP-GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARS 128
           GSW  +FEP      A +  YY  + +++SA + G+ R+MEEA  E+E+A+  GDPHA+S
Sbjct: 69  GSWRSIFEPDDSTVQAASPQYYSGLKRILSAASEGNFRLMEEAVDEIEAASSAGDPHAQS 128

Query: 129 VLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188
           ++GF+YG+GMMRE++K K+FL+H FAA GGN+QSKMA+A+TYLRQDMHDKAV+LYAELAE
Sbjct: 129 IMGFVYGIGMMREKSKSKSFLHHSFAAAGGNMQSKMALAFTYLRQDMHDKAVQLYAELAE 188

Query: 189 IAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKI 248
            AVNSFLISKDSPV+EP RIH+G EENKGALRKSRGE+DE FQILEYQAQKGNA AMYKI
Sbjct: 189 TAVNSFLISKDSPVVEPTRIHSGTEENKGALRKSRGEEDEDFQILEYQAQKGNANAMYKI 248

Query: 249 GLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308
           GLFYYFGLRGLRRD TKAL WF KA DKGEP+SME LGEIYARGAGVERNYTKALEWLT 
Sbjct: 249 GLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTL 308

Query: 309 AARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGV 368
           AA++ LYSA+NGIGYLYVKGYGV+KKNYTKA+EYFEKA DNE+  GHYNLGV+Y KGIGV
Sbjct: 309 AAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGV 368

Query: 369 KRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428
           KRDV+ A KYF VAANAG  KAFYQLAKMFHTGVGLKKNL MAT+ YKLVAERGPWSSLS
Sbjct: 369 KRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWSSLS 428

Query: 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488
           RWALE+YLKGDVGKA +LYSRMAE+GYEVAQSNAAWILDKYGE SMCMG SGFCTD ERH
Sbjct: 429 RWALEAYLKGDVGKALILYSRMAEMGYEVAQSNAAWILDKYGERSMCMGVSGFCTDKERH 488

Query: 489 QCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGY 548
           + AHSLWW+ASEQGNEHAALLIGDAYYYGRGT+RD+ RAAEAYMHA+SQSNAQAMFNLGY
Sbjct: 489 ERAHSLWWRASEQGNEHAALLIGDAYYYGRGTERDFVRAAEAYMHAKSQSNAQAMFNLGY 548

Query: 549 MHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPE 608
           MHEHGQGLP DLHLAKRYYDQAL+ D AA+LPVTLAL SLW+R+N AD+ LVR++D+LPE
Sbjct: 549 MHEHGQGLPFDLHLAKRYYDQALQSDAAARLPVTLALASLWLRRNYADTVLVRVVDSLPE 608

Query: 609 VYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRN 649
           VYP+VE W+ENV  EEGN TILTLFVCL+T+LYLRERQRR 
Sbjct: 609 VYPKVETWIENVVFEEGNATILTLFVCLITILYLRERQRRQ 649

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727705|ref|NP_001236914.1| SEL-1 precursor [Glycine max] gi|68131077|dbj|BAE02648.1| SEL-1 [Glycine max]

 Score = 1029 bits (2660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/664 (75%), Positives = 578/664 (87%), Gaps = 13/664 (1%)

Query: 8   PKLIICLLILSLYPISLKARPFILVLSQDDIKDSAASTDDESAADWDDF--GDSESMTEE 65
           PKL+  ++ILSL   S+ ARPF+L+LSQ+D KD   +   +S A+WD+F  GD+   +EE
Sbjct: 6   PKLLFLIVILSL-SASVGARPFVLILSQEDYKDDPPADP-DSPAEWDEFAHGDAHK-SEE 62

Query: 66  NLDPGSWSPVFEPSI-DPGAI---NGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME 121
           +LDPGSW P+FEP   DP  +   + +YY  + K+MS    G+  ++++A  E+   A+ 
Sbjct: 63  DLDPGSWRPIFEPPAGDPQPLPESDAAYYSAVHKLMS----GEPALIQDAGEEIAGLAVS 118

Query: 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVK 181
           G P A+SVLGFL+ MG+ RER+KGKAFLYHHFAAEGGN+QSKMA+AY+Y RQDM +K VK
Sbjct: 119 GHPAAQSVLGFLWEMGLFRERSKGKAFLYHHFAAEGGNMQSKMALAYSYTRQDMLEKGVK 178

Query: 182 LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN 241
           LY ELAE+AVNSFLISK+SPVIE +R+HNGAEENK AL KS+GE+DE FQILEYQAQKGN
Sbjct: 179 LYGELAEVAVNSFLISKESPVIEAVRLHNGAEENKEALGKSKGEEDEDFQILEYQAQKGN 238

Query: 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTK 301
           A AMYK+GLFYYFGLRGLRRD +KAL WF KA +KGEP+SME LGEIYARGAGVERNYTK
Sbjct: 239 AAAMYKVGLFYYFGLRGLRRDHSKALWWFLKAVEKGEPRSMELLGEIYARGAGVERNYTK 298

Query: 302 ALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVM 361
           ALEWLT A+R  LYSAYNG+GYLYVKGYGV++KNYTKAKEYFEKAADN+E GGHYNLGVM
Sbjct: 299 ALEWLTLASRHHLYSAYNGMGYLYVKGYGVDQKNYTKAKEYFEKAADNDEVGGHYNLGVM 358

Query: 362 YYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421
           Y KGIGVKRDVKLACK+F++AAN G  KAFYQLAK+FHTG+G KKN+ +ATALYKLVAER
Sbjct: 359 YLKGIGVKRDVKLACKFFVLAANHGQPKAFYQLAKIFHTGLGFKKNIPLATALYKLVAER 418

Query: 422 GPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGF 481
           GPWSSLSRWALESYLKGD+GKAF+LYSRMAE+GYEVAQSNAAWILDKYGE SMCMGESGF
Sbjct: 419 GPWSSLSRWALESYLKGDIGKAFMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGF 478

Query: 482 CTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQ 541
           CTDAERHQ AHSLWWQASEQGNEHAALLIGDAYYYGRGT RDYERAAEAYMHA+SQSNAQ
Sbjct: 479 CTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTARDYERAAEAYMHAKSQSNAQ 538

Query: 542 AMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVR 601
           AMFNLGYMHEHGQGLP DLHLAKRYYD+AL+ DPAAKLPVTLAL+SLW+RKN ADSF+V+
Sbjct: 539 AMFNLGYMHEHGQGLPFDLHLAKRYYDEALDHDPAAKLPVTLALSSLWVRKNYADSFVVQ 598

Query: 602 LIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNAVQAAGDVALPN 661
           +ID+LPE+YP++EAWVENV +EEGN TILTLFVCLLTVLYLRERQRR A  AAG+VA PN
Sbjct: 599 VIDSLPELYPKLEAWVENVLLEEGNATILTLFVCLLTVLYLRERQRRQAAVAAGEVAQPN 658

Query: 662 QHNE 665
             NE
Sbjct: 659 HPNE 662

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524696|ref|XP_003530964.1| PREDICTED: protein sel-1 homolog 2-like [Glycine max]

 Score = 1026 bits (2653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/648 (76%), Positives = 567/648 (87%), Gaps = 10/648 (1%)

Query: 26  ARPFILVLSQDDIKDSAASTDDESAADWDDFGDSES-MTEENLDPGSWSPVFEPSI-DPG 83
           AR F+LVLSQ+D KD   + D +SAA+WD+FGD +S  +E++LDPGSW P+FEP   DP 
Sbjct: 27  ARHFVLVLSQEDYKDDPPA-DPDSAAEWDEFGDGDSHKSEDDLDPGSWRPIFEPPAGDPQ 85

Query: 84  AI---NGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMR 140
            +   + +Y+  + K+MS    GD  ++++  +E+ + A  G P ++SVLGFL+GMG++R
Sbjct: 86  PLPESDAAYHSAVHKLMS----GDPDLIQDGAAEIGALAETGHPASQSVLGFLWGMGLLR 141

Query: 141 ERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS 200
           ER+KGKAFLYHHFAAEGGN+QSKMA+AY+Y RQDM DK V LY ELAE+AVNSFLISK+S
Sbjct: 142 ERSKGKAFLYHHFAAEGGNMQSKMALAYSYTRQDMFDKGVNLYGELAEVAVNSFLISKES 201

Query: 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR 260
           PVIE +R+HNGAEENK ALRKS+GE+DE FQILEYQAQKGNA AMYK+GLFYYFGLRGLR
Sbjct: 202 PVIEAVRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLR 261

Query: 261 RDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNG 320
           RD +KAL WF KA DKGEP+SME LGEIYARGAGVERNYTKA EWLT A+R  LYSAYNG
Sbjct: 262 RDHSKALWWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASRHHLYSAYNG 321

Query: 321 IGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFL 380
           +GYLYVKGYGV++KNYTKAKEYFEKAADN+E GGHYNLGVMY KGIGV RDVKLACK+F+
Sbjct: 322 MGYLYVKGYGVDQKNYTKAKEYFEKAADNDEVGGHYNLGVMYLKGIGVNRDVKLACKFFV 381

Query: 381 VAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDV 440
            AAN G  KAFYQLAK+FHTG+G KKN+ +ATALYKLVAERGPWSSLSRWALESYLKGDV
Sbjct: 382 FAANHGQPKAFYQLAKIFHTGLGFKKNIPLATALYKLVAERGPWSSLSRWALESYLKGDV 441

Query: 441 GKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500
           GKAF+LYSRMAE+GYEVAQSNAAWILDKYGE SMCMGESGFCTDAERHQ AHSLWWQASE
Sbjct: 442 GKAFMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASE 501

Query: 501 QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDL 560
           QGNEHAALLIGDAYYYGRGT RDYERAAEAYMHA+SQ NAQAMFNLGYMHEHGQGLP DL
Sbjct: 502 QGNEHAALLIGDAYYYGRGTARDYERAAEAYMHAKSQLNAQAMFNLGYMHEHGQGLPYDL 561

Query: 561 HLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPEVYPRVEAWVENV 620
           HLAKRYYD+ALE D AAKLPVTLAL+SLW+RKN ADSF+V++ID+LPE+YP++EAWVENV
Sbjct: 562 HLAKRYYDEALEHDSAAKLPVTLALSSLWVRKNYADSFMVQVIDSLPELYPKLEAWVENV 621

Query: 621 FMEEGNVTILTLFVCLLTVLYLRERQRRNAVQAAGDVALPNQHNEHAA 668
            +EEGN TILTLFVCLLTVLYLRERQRR A  AAG+VA PN+ NE  A
Sbjct: 622 LLEEGNATILTLFVCLLTVLYLRERQRRQAAVAAGEVAQPNRPNELGA 669

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394588|ref|NP_564049.1| Hr.3 like protein [Arabidopsis thaliana] gi|8671775|gb|AAF78381.1|AC069551_14 T10O22.22 [Arabidopsis thaliana] gi|51848591|dbj|BAD42326.1| Hrd3p like protein [Arabidopsis thaliana] gi|332191571|gb|AEE29692.1| Hr.3 like protein [Arabidopsis thaliana]

 Score = 1024 bits (2648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/641 (75%), Positives = 553/641 (86%), Gaps = 1/641 (0%)

Query: 10  LIICLLILSLYPISLKARPFILVLSQDDIKDSAASTDDESAADWDDFGDSESMTEENLDP 69
           +I+ LL+ S     + ARP +LVLS DD+           ++D+D+FG+SE  +EE LDP
Sbjct: 9   VILSLLVFSFIEFGVHARPVVLVLSNDDLNSGGDDNGVGESSDFDEFGESEPKSEEELDP 68

Query: 70  GSWSPVFEPSIDP-GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARS 128
           GSW  +FEP      A +  YY  + K++SA + G+ R+MEEA  E+E+A+  GDPHA+S
Sbjct: 69  GSWRSIFEPDDSTVQAASPQYYSGLKKILSAASEGNFRLMEEAVDEIEAASSAGDPHAQS 128

Query: 129 VLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188
           ++GF+YG+GMMRE++K K+FL+H+FAA GGN+QSKMA+A+TYLRQDMHDKAV+LYAELAE
Sbjct: 129 IMGFVYGIGMMREKSKSKSFLHHNFAAAGGNMQSKMALAFTYLRQDMHDKAVQLYAELAE 188

Query: 189 IAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKI 248
            AVNSFLISKDSPV+EP RIH+G EENKGALRKSRGE+DE FQILEYQAQKGNA AMYKI
Sbjct: 189 TAVNSFLISKDSPVVEPTRIHSGTEENKGALRKSRGEEDEDFQILEYQAQKGNANAMYKI 248

Query: 249 GLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308
           GLFYYFGLRGLRRD TKAL WF KA DKGEP+SME LGEIYARGAGVERNYTKALEWLT 
Sbjct: 249 GLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTL 308

Query: 309 AARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGV 368
           AA++ LYSA+NGIGYLYVKGYGV+KKNYTKA+EYFEKA DNE+  GHYNLGV+Y KGIGV
Sbjct: 309 AAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGV 368

Query: 369 KRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428
            RDV+ A KYF VAANAG  KAFYQLAKMFHTGVGLKKNL MAT+ YKLVAERGPWSSLS
Sbjct: 369 NRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWSSLS 428

Query: 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488
           RWALE+YLKGDVGKA +LYSRMAE+GYEVAQSNAAWILDKYGE SMCMG SGFCTD ERH
Sbjct: 429 RWALEAYLKGDVGKALILYSRMAEMGYEVAQSNAAWILDKYGERSMCMGVSGFCTDKERH 488

Query: 489 QCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGY 548
           + AHSLWW+ASEQGNEHAALLIGDAYYYGRGT+RD+ RAAEAYMHA+SQSNAQAMFNLGY
Sbjct: 489 ERAHSLWWRASEQGNEHAALLIGDAYYYGRGTERDFVRAAEAYMHAKSQSNAQAMFNLGY 548

Query: 549 MHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPE 608
           MHEHGQGLP DLHLAKRYYD++L+ D AA+LPVTLAL SLW+R+N AD+ LVR++D+LPE
Sbjct: 549 MHEHGQGLPFDLHLAKRYYDESLQSDAAARLPVTLALASLWLRRNYADTVLVRVVDSLPE 608

Query: 609 VYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRN 649
           VYP+VE W+ENV  EEGN TILTLFVCL+T+LYLRERQRR 
Sbjct: 609 VYPKVETWIENVVFEEGNATILTLFVCLITILYLRERQRRQ 649

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439463|ref|XP_004137505.1| PREDICTED: protein sel-1 homolog 1-like [Cucumis sativus]

 Score = 1024 bits (2648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/671 (74%), Positives = 577/671 (85%), Gaps = 16/671 (2%)

Query: 7   TPKLIICLLILSLYPISLKARPFILVLSQDDIKDSA-----ASTDDESAADWDDFGDSES 61
           T +L +  LIL L  + + ARPF++V+SQDD+KD A     + + +  +ADWD+FG+ ES
Sbjct: 5   TRRLQLIFLILCLSSLFINARPFLIVISQDDLKDGAPPDDSSDSANSDSADWDEFGEPES 64

Query: 62  MTEE-NLDPGSWSPVFEP-----SIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEV 115
                 LDPGSW P+FEP     + D  A    YY  + KMMSAV++GD+R+ME+A +++
Sbjct: 65  QNSALELDPGSWRPIFEPDSTASASDSDAPQDLYYTALGKMMSAVSSGDLRLMEDAVADI 124

Query: 116 ESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQD 174
           + A  E GDPHA+SVLG LYGMG+M+E NK KAF+YHHFAAEG N QSKMA+AY Y RQ+
Sbjct: 125 DQAVAESGDPHAQSVLGLLYGMGIMKETNKAKAFMYHHFAAEG-NKQSKMALAYIYFRQE 183

Query: 175 MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILE 234
           M++KAVKLYAELAE+A+NS L+SKDSPVIEP+RIHNGAEENK ALRKSRGE+DE FQILE
Sbjct: 184 MYEKAVKLYAELAEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEEDEDFQILE 243

Query: 235 YQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAG 294
           YQAQKGNAGAMY+IGLFYYFGLRGLRRD  KAL WFSKA +KGEP+SME LGEIYARGAG
Sbjct: 244 YQAQKGNAGAMYRIGLFYYFGLRGLRRDHAKALSWFSKAVEKGEPKSMELLGEIYARGAG 303

Query: 295 VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGG 354
           VER+YTKAL+WLT A++Q  ++AYNG+GYLYVKGYGVEK NYTKAKEYFEKAA+N+E+GG
Sbjct: 304 VERDYTKALQWLTRASKQPSFTAYNGMGYLYVKGYGVEK-NYTKAKEYFEKAAENDESGG 362

Query: 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATAL 414
           HYNLGVMY KGIGVKRDVK AC +F++AANAG  KAFYQLAKMFHTGVGLK+N+ MA+AL
Sbjct: 363 HYNLGVMYLKGIGVKRDVKKACTHFIMAANAGQPKAFYQLAKMFHTGVGLKRNIPMASAL 422

Query: 415 YKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSM 474
           YKLVAERGPWSSLSRWALESYLK D+GKAF LY+RMAELGYEVAQSNAAWILDKYGE SM
Sbjct: 423 YKLVAERGPWSSLSRWALESYLKSDIGKAFFLYARMAELGYEVAQSNAAWILDKYGEQSM 482

Query: 475 CMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHA 534
           C+GESGFCTDAERHQ AHSLWWQASEQGNEHAALLIGDAYYYGRGT  DY+RAAEAYMHA
Sbjct: 483 CLGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTDVDYDRAAEAYMHA 542

Query: 535 RSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNN 594
           +SQ NAQAMFNLGYMHEHG GLP DLHLAKRYYDQALE+DPAA+LPV LAL SLW+R N+
Sbjct: 543 KSQLNAQAMFNLGYMHEHGLGLPFDLHLAKRYYDQALELDPAARLPVKLALVSLWLRMNH 602

Query: 595 ADSFLVRLIDALPEVYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRN-AVQA 653
           ADSFLV +ID+LPEVYP+++AWVE+V +EEGN TILTLF CLLTVLYLRERQRR+ AV+A
Sbjct: 603 ADSFLVHVIDSLPEVYPKIDAWVEDVLLEEGNATILTLFACLLTVLYLRERQRRHAAVRA 662

Query: 654 AGDVAL-PNQH 663
           A  V L PN H
Sbjct: 663 AEAVPLHPNDH 673

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456173|ref|XP_002282611.1| PREDICTED: protein sel-1 homolog 2 [Vitis vinifera]

 Score = 1021 bits (2641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/658 (78%), Positives = 572/658 (86%), Gaps = 12/658 (1%)

Query: 23  SLKARPFILVLSQDDIKDSAASTDDESA-----ADWDDFGDSESMTEENLDPGSWSPVFE 77
           S  ARPF+L+L+ DD+ D+A  + + +A     +DWD+FGDS++  ++ LDPGSW P+ E
Sbjct: 18  STLARPFVLILTPDDLSDTAPPSSESAADSGDTSDWDEFGDSDARLDDELDPGSWRPILE 77

Query: 78  PSIDPGAIN---GSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLY 134
           P   P         YY  ++KM++A ++G  RVMEEA SE+E+AA  G+P A+S LGFLY
Sbjct: 78  PDSGPEPKTEDEAVYYSGVAKMIAAASSGGPRVMEEAASEIEAAATAGNPLAQSALGFLY 137

Query: 135 GMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF 194
             GMMRERNK KAF+YH+FA +GGN QSKM +AYTY RQDM+DKAV+LYAELAEIAVNSF
Sbjct: 138 ETGMMRERNKAKAFMYHYFATDGGNTQSKMVLAYTYSRQDMYDKAVELYAELAEIAVNSF 197

Query: 195 LISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYF 254
           LISKDSPVIEP+R+HNGAEENK ALRKSRGE+DE FQILEYQAQKGNA AMYKIG+FYYF
Sbjct: 198 LISKDSPVIEPVRLHNGAEENKEALRKSRGEEDEDFQILEYQAQKGNAAAMYKIGIFYYF 257

Query: 255 GLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL 314
           GLRGLRRDR KAL+WF KA +KGEP+SME LGEIYARGAGVERNYTKALEWLT A+ Q+L
Sbjct: 258 GLRGLRRDRAKALLWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKALEWLTLAS-QRL 316

Query: 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKL 374
            SAYNG+GYLYVKGYGVEKKNYTKAKEYFEKA D++EAGGHYNLGVMY KG+GVKRDVKL
Sbjct: 317 PSAYNGMGYLYVKGYGVEKKNYTKAKEYFEKAVDHDEAGGHYNLGVMYLKGVGVKRDVKL 376

Query: 375 ACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALES 434
           AC YF++AA  G  KAFYQLAKMFHTGVGLK+NL MATALYKLVAERGPWSSLSRWALES
Sbjct: 377 ACNYFIMAAKEGQPKAFYQLAKMFHTGVGLKRNLPMATALYKLVAERGPWSSLSRWALES 436

Query: 435 YLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494
           YLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKY E SMC+GESGFCTDAER Q AHSL
Sbjct: 437 YLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYRERSMCIGESGFCTDAERLQRAHSL 496

Query: 495 WWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQ 554
           WWQASEQGNEHAALLIGDAYYYGRGT+RDY+RAA+AYMHA+SQSNAQAMFNLGYMHEHGQ
Sbjct: 497 WWQASEQGNEHAALLIGDAYYYGRGTERDYDRAAKAYMHAKSQSNAQAMFNLGYMHEHGQ 556

Query: 555 GLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPEVYPRVE 614
           GLP DLHLAKRYYDQALE+D AAKLPVTLALTSLWIRKN A SFLV L+D+LPEVYP+VE
Sbjct: 557 GLPFDLHLAKRYYDQALEIDSAAKLPVTLALTSLWIRKNYASSFLVDLVDSLPEVYPKVE 616

Query: 615 AWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNAVQAAGDVALPNQHNEHA--AAP 670
           AWVENV MEEGN TILTLFVCLLTVLYLRERQRR+ V AA + ALP   NEH   AAP
Sbjct: 617 AWVENVIMEEGNATILTLFVCLLTVLYLRERQRRH-VAAAPEAALPLLPNEHGVLAAP 673

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	672
TAIR|locus:2014109	678	EBS5 "AT1G18260" [Arabidopsis	0.982	0.973	0.728	3.4e-267
TAIR|locus:2035047	604	AT1G73570 "AT1G73570" [Arabido	0.538	0.599	0.7	1.3e-139
UNIPROTKB|E1C6X2	791	SEL1L "Uncharacterized protein	0.818	0.695	0.366	2.5e-81
UNIPROTKB|F1MGJ5	840	SEL1L "Uncharacterized protein	0.796	0.636	0.360	4.2e-79
UNIPROTKB|Q9UBV2	794	SEL1L "Protein sel-1 homolog 1	0.796	0.673	0.362	5.4e-79
UNIPROTKB|F1PVX5	794	SEL1L "Uncharacterized protein	0.796	0.673	0.360	5.4e-79
UNIPROTKB|Q5TEA6	688	SEL1L2 "Protein sel-1 homolog	0.714	0.697	0.372	2.3e-78
RGD|620147	794	Sel1l "sel-1 suppressor of lin	0.796	0.673	0.360	3e-78
UNIPROTKB|G3V9D3	793	Sel1l "Sel1 (Suppressor of lin	0.796	0.674	0.360	3e-78
MGI|MGI:1329016	790	Sel1l "sel-1 suppressor of lin	0.796	0.677	0.360	4.8e-78

TAIR|locus:2014109 EBS5 "AT1G18260" [Arabidopsis thaliana (taxid:3702)]

 Score = 2570 (909.7 bits), Expect = 3.4e-267, P = 3.4e-267
 Identities = 486/667 (72%), Positives = 555/667 (83%)

Query:    10 LIICLLILSLYPISLKARPFILVLSQDDIKXXXXXXXXXXXXXXXXXXXSESMTEENLDP 69
             +I+ LL+ S     + ARP +LVLS DD+                    SE  +EE LDP
Sbjct:     9 VILSLLVFSFIEFGVHARPVVLVLSNDDLNSGGDDNGVGESSDFDEFGESEPKSEEELDP 68

Query:    70 GSWSPVFEPSIDP-GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARS 128
             GSW  +FEP      A +  YY  + K++SA + G+ R+MEEA  E+E+A+  GDPHA+S
Sbjct:    69 GSWRSIFEPDDSTVQAASPQYYSGLKKILSAASEGNFRLMEEAVDEIEAASSAGDPHAQS 128

Query:   129 VLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188
             ++GF+YG+GMMRE++K K+FL+H+FAA GGN+QSKMA+A+TYLRQDMHDKAV+LYAELAE
Sbjct:   129 IMGFVYGIGMMREKSKSKSFLHHNFAAAGGNMQSKMALAFTYLRQDMHDKAVQLYAELAE 188

Query:   189 IAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKI 248
              AVNSFLISKDSPV+EP RIH+G EENKGALRKSRGE+DE FQILEYQAQKGNA AMYKI
Sbjct:   189 TAVNSFLISKDSPVVEPTRIHSGTEENKGALRKSRGEEDEDFQILEYQAQKGNANAMYKI 248

Query:   249 GLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308
             GLFYYFGLRGLRRD TKAL WF KA DKGEP+SME LGEIYARGAGVERNYTKALEWLT 
Sbjct:   249 GLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTL 308

Query:   309 AARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGV 368
             AA++ LYSA+NGIGYLYVKGYGV+KKNYTKA+EYFEKA DNE+  GHYNLGV+Y KGIGV
Sbjct:   309 AAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGV 368

Query:   369 KRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428
              RDV+ A KYF VAANAG  KAFYQLAKMFHTGVGLKKNL MAT+ YKLVAERGPWSSLS
Sbjct:   369 NRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWSSLS 428

Query:   429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488
             RWALE+YLKGDVGKA +LYSRMAE+GYEVAQSNAAWILDKYGE SMCMG SGFCTD ERH
Sbjct:   429 RWALEAYLKGDVGKALILYSRMAEMGYEVAQSNAAWILDKYGERSMCMGVSGFCTDKERH 488

Query:   489 QCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGY 548
             + AHSLWW+ASEQGNEHAALLIGDAYYYGRGT+RD+ RAAEAYMHA+SQSNAQAMFNLGY
Sbjct:   489 ERAHSLWWRASEQGNEHAALLIGDAYYYGRGTERDFVRAAEAYMHAKSQSNAQAMFNLGY 548

Query:   549 MHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPE 608
             MHEHGQGLP DLHLAKRYYD++L+ D AA+LPVTLAL SLW+R+N AD+ LVR++D+LPE
Sbjct:   549 MHEHGQGLPFDLHLAKRYYDESLQSDAAARLPVTLALASLWLRRNYADTVLVRVVDSLPE 608

Query:   609 VYPRVEAWVENVFMEEGNVTILTLFVCLLTVLYLRERQRRNAV----QAAGDVALPNQHN 664
             VYP+VE W+ENV  EEGN TILTLFVCL+T+LYLRERQRR  V      A DVA P   +
Sbjct:   609 VYPKVETWIENVVFEEGNATILTLFVCLITILYLRERQRRQVVVVADPVAADVAQPLDAD 668

Query:   665 --EHAAA 669
               +H AA
Sbjct:   669 VAQHLAA 675

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

TAIR|locus:2035047 AT1G73570 "AT1G73570" [Arabidopsis thaliana (taxid:3702)]

 Score = 1366 (485.9 bits), Expect = 1.3e-139, P = 1.3e-139
 Identities = 259/370 (70%), Positives = 301/370 (81%)

Query:   256 LRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGA-GVERNYTKALEWLTHAARQQL 314
             LR  R +  +        A+KG   +M  +G  Y  G  G+ R++ KAL W + A     
Sbjct:   220 LRKSRGEEDEDFQILEYQAEKGNSVAMHKIGLFYYFGLRGLRRDHAKALYWFSKAE---- 275

Query:   315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKL 374
                +NG+GYLYVKGYGV+K+NYTKA+EYFE AA+NE+  GHYNLGV+Y KG GVK+DV+ 
Sbjct:   276 ---FNGLGYLYVKGYGVDKRNYTKAREYFEMAANNEDPSGHYNLGVLYLKGTGVKKDVRH 332

Query:   375 ACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALES 434
             A KYF VAANAG  KAFYQLAKMFHTGVGL KNL MAT  YKLVAERGPWSSLSRWALE+
Sbjct:   333 ATKYFFVAANAGQPKAFYQLAKMFHTGVGLTKNLEMATTFYKLVAERGPWSSLSRWALEA 392

Query:   435 YLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494
             YLKGDVGKAF+LYSRM+ELGYEVAQSNAAWI+DKYGE SMCMG  GFCTD ERH  AHSL
Sbjct:   393 YLKGDVGKAFILYSRMSELGYEVAQSNAAWIVDKYGERSMCMGVYGFCTDKERHDRAHSL 452

Query:   495 WWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQ 554
             WW+ASEQGNEHAALLIGDAYYYGRGT+RD+ RAAEAYM+A+SQSNAQAMFNLGYMHEHG+
Sbjct:   453 WWRASEQGNEHAALLIGDAYYYGRGTERDFVRAAEAYMYAKSQSNAQAMFNLGYMHEHGE 512

Query:   555 GLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPEVYPRVE 614
             GLP DLHLAKRYYDQAL+ D AAKLPVTLAL S+W+R+N AD+ LV+++++LPEV+ +V 
Sbjct:   513 GLPFDLHLAKRYYDQALQSDTAAKLPVTLALASVWVRRNYADTALVQVLNSLPEVHQKVV 572

Query:   615 AWVENVFMEE 624
              WVEN  +EE
Sbjct:   573 EWVENGMLEE 582

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C6X2 SEL1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 213/581 (36%), Positives = 323/581 (55%)

Query:    93 ISKMMSAVTNGD-VRVMEEATSEV-ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
             + K+  A+  GD ++   +++ E+ E    EG P  +  LGFLY  G+    ++ KA +Y
Sbjct:   220 MEKVSYALLFGDYLKQNIQSSKELFEKLTEEGSPKGQMALGFLYASGLGVNSSQAKALVY 279

Query:   151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
             + F A GGN+ + M + Y Y     + Q   + A+  Y  +A    +   ++  + V++ 
Sbjct:   280 YTFGALGGNLIAHMILGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGT-VVQR 337

Query:   206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK 265
             IR+ +  E N G +     E+D   Q  ++ A+KG+  A   +G  +  G RG+ ++  +
Sbjct:   338 IRLADEVE-NPG-MASGMLEED-LIQYYQFVAEKGDVQAQVGLGQLHLHGGRGVEQNHQR 394

Query:   266 ALMWFSKAADKGEPQSMEFLGEIYARGAGV-ERNYTKALEWLTHAARQQLYSAYNGIGYL 324
             A  +F++AA+ G   +M FLG++Y+ G+ V  +N   AL++   AA        +G+G  
Sbjct:   395 AFEYFNQAANAGNSHAMAFLGKMYSEGSDVVPQNNETALQYFKKAADMGNPVGQSGLGMA 454

Query:   325 YVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384
             Y+ G GV   NY  A +YF+KAA+     G   LG MYY GIGVKRD K A KYF +A+ 
Sbjct:   455 YLYGRGVPV-NYELALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQ 513

Query:   385 AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAF 444
              GH  AFY LA+M  TG G+ ++ H A  L+K V ERG WS     A  SY  GD   A 
Sbjct:   514 GGHILAFYNLAQMHATGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDSNSAV 573

Query:   445 LLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNE 504
             + Y  +AE GYEVAQSNAA+ILD+  E S+ +GE+     A  H      W +A+ QG  
Sbjct:   574 VQYLLLAEQGYEVAQSNAAFILDQK-EASI-VGENETYPRALLH------WNRAASQGYT 625

Query:   505 HAALLIGDAYYYGRGTQRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDLHLA 563
              A + +GD ++YG GT  DYE A   Y + +  Q +AQAMFNLGYMHE G G+  D+HLA
Sbjct:   626 VARIKLGDYHFYGFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHLA 685

Query:   564 KRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDALPEVYPRVEAWVENVFME 623
             KR+YD A E  P A++PV LAL  L +    A  + +R ++ L EV+  ++  ++ +   
Sbjct:   686 KRFYDMAAEASPDAQVPVFLALCKLGVIY--AVQY-IREMN-LREVFSHID--MDQLLGP 739

Query:   624 EGNVTILTLFVCLL-TVLYLRERQRRNAVQAAG-DVALPNQ 662
             E ++ ++T+   LL T++  R+RQ +   + AG   A+P Q
Sbjct:   740 EWDLYLMTIITLLLGTIIAYRQRQHQAIPRPAGLRPAVPQQ 780

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

UNIPROTKB|F1MGJ5 SEL1L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 205/569 (36%), Positives = 314/569 (55%)

Query:    93 ISKMMSAVTNGDVRVME-EATSEV-ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
             + ++  A+  GD      +A  E+ E    EG P  ++ LGFLY  G+    ++ KA +Y
Sbjct:   268 LERVSYALLFGDYLTQNIQAAKEMFEKLTEEGSPKGQTALGFLYASGLGVNSSQAKALVY 327

Query:   151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
             + F A GGN+ + M + Y Y     + Q   + A+  Y  +A    +   ++  S V++ 
Sbjct:   328 YTFGALGGNLIAHMVLGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQR 385

Query:   206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK 265
             IR+ +  E N G +     E+D   Q  ++ A+KG+  A   +G  +  G RG+ ++  +
Sbjct:   386 IRLPDEVE-NPG-MNSGMLEED-LIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQR 442

Query:   266 ALMWFSKAADKGEPQSMEFLGEIYARGAGV--ERNYTKALEWLTHAARQQLYSAYNGIGY 323
             A  +F+ AA+ G   +M FLG++Y+ G+ +  + N T AL +   AA        +G+G 
Sbjct:   443 AFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNET-ALHYFKKAADMGNPVGQSGLGM 501

Query:   324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383
              Y+ G GV+  NY  A +YF+KAA+     G   LG MYY GIGVKRD K A KYF +A+
Sbjct:   502 AYLYGRGVQV-NYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLAS 560

Query:   384 NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKA 443
               GH  AFY LA+M  +G G+ ++ H A  L+K V ERG WS     A  SY  GD   A
Sbjct:   561 QGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYSSYKDGDSNAA 620

Query:   444 FLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503
              + Y  +AE GYEVAQSNAA+ILD+  E ++ +GE+     A  H      W +A+ QG 
Sbjct:   621 VIQYLLLAEQGYEVAQSNAAFILDQR-EATI-VGENETYPRALLH------WNRAASQGY 672

Query:   504 EHAALLIGDAYYYGRGTQRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDLHL 562
               A + +GD ++YG GT  DYE A   Y + +  Q +AQAMFNLGYMHE G G+  D+HL
Sbjct:   673 TVARIKLGDYHFYGFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHL 732

Query:   563 AKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDA-LPEVYPRVEAWVENVF 621
             AKR+YD A E  P A++PV LAL  L +       FL  + +  + +++ +++  ++ + 
Sbjct:   733 AKRFYDMAAEASPDAQVPVFLALCKLGVVY-----FLQYIRETNIRDIFTQLD--MDQLL 785

Query:   622 MEEGNVTILTLFVCLL-TVLYLRERQRRN 649
               E ++ ++T+   LL TV+  R+RQ ++
Sbjct:   786 GPEWDLYLMTIIALLLGTVIAYRQRQHQD 814

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

UNIPROTKB|Q9UBV2 SEL1L "Protein sel-1 homolog 1" [Homo sapiens (taxid:9606)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 206/569 (36%), Positives = 314/569 (55%)

Query:    93 ISKMMSAVTNGDVRVME-EATSEV-ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
             + ++  A+  GD      +A  E+ E    EG P  ++ LGFLY  G+    ++ KA +Y
Sbjct:   222 LERVSYALLFGDYLPQNIQAAREMFEKLTEEGSPKGQTALGFLYASGLGVNSSQAKALVY 281

Query:   151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
             + F A GGN+ + M + Y Y     + Q   + A+  Y  +A    +   ++  S V++ 
Sbjct:   282 YTFGALGGNLIAHMVLGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQR 339

Query:   206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK 265
             IR+ +  E N G +     E+D   Q  ++ A+KG+  A   +G  +  G RG+ ++  +
Sbjct:   340 IRLPDEVE-NPG-MNSGMLEED-LIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQR 396

Query:   266 ALMWFSKAADKGEPQSMEFLGEIYARGAGV--ERNYTKALEWLTHAARQQLYSAYNGIGY 323
             A  +F+ AA+ G   +M FLG++Y+ G+ +  + N T AL +   AA        +G+G 
Sbjct:   397 AFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNET-ALHYFKKAADMGNPVGQSGLGM 455

Query:   324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383
              Y+ G GV+  NY  A +YF+KAA+     G   LG MYY GIGVKRD K A KYF +A+
Sbjct:   456 AYLYGRGVQV-NYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLAS 514

Query:   384 NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKA 443
               GH  AFY LA+M  +G G+ ++ H A  L+K V ERG WS     A  SY  GD   A
Sbjct:   515 QGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAA 574

Query:   444 FLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503
              + Y  +AE GYEVAQSNAA+ILD+  E S+ +GE+     A  H      W +A+ QG 
Sbjct:   575 VIQYLLLAEQGYEVAQSNAAFILDQR-EASI-VGENETYPRALLH------WNRAASQGY 626

Query:   504 EHAALLIGDAYYYGRGTQRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDLHL 562
               A + +GD ++YG GT  DYE A   Y + +  Q +AQAMFNLGYMHE G G+  D+HL
Sbjct:   627 TVARIKLGDYHFYGFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHL 686

Query:   563 AKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDA-LPEVYPRVEAWVENVF 621
             AKR+YD A E  P A++PV LAL  L +       FL  + +  + +++ +++  ++ + 
Sbjct:   687 AKRFYDMAAEASPDAQVPVFLALCKLGVVY-----FLQYIRETNIRDMFTQLD--MDQLL 739

Query:   622 MEEGNVTILTLFVCLL-TVLYLRERQRRN 649
               E ++ ++T+   LL TV+  R+RQ ++
Sbjct:   740 GPEWDLYLMTIIALLLGTVIAYRQRQHQD 768

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=NAS

UNIPROTKB|F1PVX5 SEL1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 205/569 (36%), Positives = 314/569 (55%)

Query:    93 ISKMMSAVTNGDVRVME-EATSEV-ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
             + ++  A+  GD      +A  E+ E    EG P  ++ LGFLY  G+    ++ KA +Y
Sbjct:   222 LERVSYALLFGDYLTQNIQAAKEMFEKLTEEGSPKGQTALGFLYASGLGVNSSQAKALVY 281

Query:   151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
             + F A GGN+ + M + Y Y     + Q   + A+  Y  +A    +   ++  S V++ 
Sbjct:   282 YTFGALGGNLIAHMVLGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQR 339

Query:   206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK 265
             IR+ +  E N G +     E+D   Q  ++ A+KG+  A   +G  +  G RG+ ++  +
Sbjct:   340 IRLPDEVE-NPG-MNSGMLEED-LIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQR 396

Query:   266 ALMWFSKAADKGEPQSMEFLGEIYARGAGV--ERNYTKALEWLTHAARQQLYSAYNGIGY 323
             A  +F+ AA+ G   +M FLG++Y+ G+ +  + N T AL +   AA        +G+G 
Sbjct:   397 AFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNET-ALHYFKKAADMGNPVGQSGLGM 455

Query:   324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383
              Y+ G GV+  NY  A +YF+KAA+     G   LG MYY GIGVKRD K A KYF +A+
Sbjct:   456 AYLYGRGVQV-NYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLAS 514

Query:   384 NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKA 443
               GH  AFY LA+M  +G G+ ++ H A  L+K V ERG WS     A  SY  GD   A
Sbjct:   515 QGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAA 574

Query:   444 FLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503
              + Y  +AE GYEVAQSNAA+ILD+  E ++ +GE+     A  H      W +A+ QG 
Sbjct:   575 VIQYLLLAEQGYEVAQSNAAFILDQR-EATI-VGENETYPRALLH------WNRAASQGY 626

Query:   504 EHAALLIGDAYYYGRGTQRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDLHL 562
               A + +GD ++YG GT  DYE A   Y + +  Q +AQAMFNLGYMHE G G+  D+HL
Sbjct:   627 TVARIKLGDYHFYGFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHL 686

Query:   563 AKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDA-LPEVYPRVEAWVENVF 621
             AKR+YD A E  P A++PV LAL  L +       FL  + +  + +++ +++  ++ + 
Sbjct:   687 AKRFYDMAAEASPDAQVPVFLALCKLGVVY-----FLQYIRETNIRDMFTQLD--MDQLL 739

Query:   622 MEEGNVTILTLFVCLL-TVLYLRERQRRN 649
               E ++ ++T+   LL TV+  R+RQ ++
Sbjct:   740 GPEWDLYLMTIIALLLGTVIAYRQRQHQD 768

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

UNIPROTKB|Q5TEA6 SEL1L2 "Protein sel-1 homolog 2" [Homo sapiens (taxid:9606)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 189/507 (37%), Positives = 284/507 (56%)

Query:    93 ISKMMSAVTNGD--VRVMEEATSEVESAAMEGDPHARSVLGFL--YGMGMMRERNKGKAF 148
             + KM  A+  G+  V+ +  A    ES A EG   A++ LGFL  YG+GM  E ++ KA 
Sbjct:   146 MEKMADALLFGNFGVQNITAAIQLYESLAKEGSCKAQNALGFLSSYGIGM--EYDQAKAL 203

Query:   149 LYHHFAAEGGNIQSKMAVAYTYLR-----QDMHDKAVKLYAELAEIAVNSFLISKDSPVI 203
             +Y+ F + GGN+ S+M + Y YL      Q+  + A+  Y ++A+   ++F  S+  PV 
Sbjct:   204 IYYTFGSAGGNMMSQMILGYRYLSGINVLQNC-EVALSYYKKVADYIADTFEKSEGVPV- 261

Query:   204 EPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDR 263
             E +R+    E  +     S   D + +Q  ++ A++G+      +G  +  G +GL +D 
Sbjct:   262 EKVRL---TERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDY 318

Query:   264 TKALMWFSKAADKGEPQSMEFLGEIYARG-AGVERNYTKALEWLTHAARQQLYSAYNGIG 322
              KAL +F KAA  G   +M F+G++Y  G A V +N   A ++ + AA +      +G+G
Sbjct:   319 YKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNAIGLHGLG 378

Query:   323 YLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382
              LY  G GV   NY +A +YF+KAA+       + LG MYY G G+ +D KLA KYF +A
Sbjct:   379 LLYFHGKGVPL-NYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDYKLAFKYFYLA 437

Query:   383 ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGK 442
             + +G   A Y LAKM+ TG G+ ++   A  LYK V E G W+     A  +Y  GD+  
Sbjct:   438 SQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELGHWAEKFLTAYFAYKDGDIDS 497

Query:   443 AFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502
             + + Y+ +AE+GYEVAQSN+A+IL+          ++      + +  A  LW +A+ QG
Sbjct:   498 SLVQYALLAEMGYEVAQSNSAFILESK--------KANILEKEKMYPMALLLWNRAAIQG 549

Query:   503 NEHAALLIGDAYYYGRGTQRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDLH 561
             N  A + IGD +YYG GT++DY+ AA  Y + A    NAQAMFNL YM+EHG G+  D+H
Sbjct:   550 NAFARVKIGDYHYYGYGTKKDYQTAATHYSIAANKYHNAQAMFNLAYMYEHGLGITKDIH 609

Query:   562 LAKRYYDQALEVDPAAKLPVTLALTSL 588
             LA+R YD A +  P A +PV  A+  L
Sbjct:   610 LARRLYDMAAQTSPDAHIPVLFAVMKL 636

GO:0016021 "integral to membrane" evidence=IEA

RGD|620147 Sel1l "sel-1 suppressor of lin-12-like (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 205/569 (36%), Positives = 314/569 (55%)

Query:    93 ISKMMSAVTNGDVRVME-EATSEV-ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
             + ++  A+  GD      +A  E+ E    EG P  ++ LGFLY  G+    ++ KA +Y
Sbjct:   222 LERVSYALLFGDYLTQNIQAAKEMFEKLTEEGSPKGQTGLGFLYASGLGVNSSQAKALVY 281

Query:   151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
             + F A GGN+ + M + Y Y     + Q   + A+  Y  +A    +   ++  S V++ 
Sbjct:   282 YTFGALGGNLIAHMVLGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQR 339

Query:   206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK 265
             IR+ +  E N G +     E+D   Q  ++ A+KG+  A   +G  +  G RG+ ++  +
Sbjct:   340 IRLPDEVE-NPG-MNSGMLEED-LIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQR 396

Query:   266 ALMWFSKAADKGEPQSMEFLGEIYARGAGV--ERNYTKALEWLTHAARQQLYSAYNGIGY 323
             A  +F+ AA+ G   +M FLG++Y+ G+ +  + N T AL +   AA        +G+G 
Sbjct:   397 AFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNET-ALHYFKKAADMGNPVGQSGLGM 455

Query:   324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383
              Y+ G GV+  NY  A +YF+KAA+     G   LG MYY GIGVKRD K A KYF +A+
Sbjct:   456 AYLYGRGVQV-NYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLAS 514

Query:   384 NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKA 443
               GH  AFY LA+M  +G G+ ++ H A  L+K V ERG WS     A  SY   D   A
Sbjct:   515 QGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDDDYNAA 574

Query:   444 FLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503
              + Y  +AE GYEVAQSNAA+ILD+  E ++ +GE+     A  H      W +A+ QG 
Sbjct:   575 VVQYLLLAEQGYEVAQSNAAFILDQR-EATI-VGENETYPRALLH------WNRAASQGY 626

Query:   504 EHAALLIGDAYYYGRGTQRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDLHL 562
               A + +GD ++YG GT  DYE A   Y + +  Q +AQAMFNLGYMHE G G+  D+HL
Sbjct:   627 TVARIKLGDYHFYGFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHL 686

Query:   563 AKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDA-LPEVYPRVEAWVENVF 621
             AKR+YD A E  P A++PV LAL  L +       FL  + +A + +++ +++  ++ + 
Sbjct:   687 AKRFYDMAAEASPDAQVPVFLALCKLGVVY-----FLQYIREANIRDLFTQLD--MDQLL 739

Query:   622 MEEGNVTILTLFVCLL-TVLYLRERQRRN 649
               E ++ ++T+   LL TV+  R+RQ ++
Sbjct:   740 GPEWDLYLMTIIALLLGTVIAYRQRQHQD 768

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0034976 "response to endoplasmic reticulum stress" evidence=ISO

UNIPROTKB|G3V9D3 Sel1l "Sel1 (Suppressor of lin-12) 1 homolog (C. elegans), isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 205/569 (36%), Positives = 314/569 (55%)

Query:    93 ISKMMSAVTNGDVRVME-EATSEV-ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
             + ++  A+  GD      +A  E+ E    EG P  ++ LGFLY  G+    ++ KA +Y
Sbjct:   221 LERVSYALLFGDYLTQNIQAAKEMFEKLTEEGSPKGQTGLGFLYASGLGVNSSQAKALVY 280

Query:   151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
             + F A GGN+ + M + Y Y     + Q   + A+  Y  +A    +   ++  S V++ 
Sbjct:   281 YTFGALGGNLIAHMVLGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQR 338

Query:   206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK 265
             IR+ +  E N G +     E+D   Q  ++ A+KG+  A   +G  +  G RG+ ++  +
Sbjct:   339 IRLPDEVE-NPG-MNSGMLEED-LIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQR 395

Query:   266 ALMWFSKAADKGEPQSMEFLGEIYARGAGV--ERNYTKALEWLTHAARQQLYSAYNGIGY 323
             A  +F+ AA+ G   +M FLG++Y+ G+ +  + N T AL +   AA        +G+G 
Sbjct:   396 AFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNET-ALHYFKKAADMGNPVGQSGLGM 454

Query:   324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383
              Y+ G GV+  NY  A +YF+KAA+     G   LG MYY GIGVKRD K A KYF +A+
Sbjct:   455 AYLYGRGVQV-NYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLAS 513

Query:   384 NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKA 443
               GH  AFY LA+M  +G G+ ++ H A  L+K V ERG WS     A  SY   D   A
Sbjct:   514 QGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDDDYNAA 573

Query:   444 FLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503
              + Y  +AE GYEVAQSNAA+ILD+  E ++ +GE+     A  H      W +A+ QG 
Sbjct:   574 VVQYLLLAEQGYEVAQSNAAFILDQR-EATI-VGENETYPRALLH------WNRAASQGY 625

Query:   504 EHAALLIGDAYYYGRGTQRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDLHL 562
               A + +GD ++YG GT  DYE A   Y + +  Q +AQAMFNLGYMHE G G+  D+HL
Sbjct:   626 TVARIKLGDYHFYGFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHL 685

Query:   563 AKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDA-LPEVYPRVEAWVENVF 621
             AKR+YD A E  P A++PV LAL  L +       FL  + +A + +++ +++  ++ + 
Sbjct:   686 AKRFYDMAAEASPDAQVPVFLALCKLGVVY-----FLQYIREANIRDLFTQLD--MDQLL 738

Query:   622 MEEGNVTILTLFVCLL-TVLYLRERQRRN 649
               E ++ ++T+   LL TV+  R+RQ ++
Sbjct:   739 GPEWDLYLMTIIALLLGTVIAYRQRQHQD 767

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

MGI|MGI:1329016 Sel1l "sel-1 suppressor of lin-12-like (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 205/569 (36%), Positives = 314/569 (55%)

Query:    93 ISKMMSAVTNGDVRVME-EATSEV-ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
             + ++  A+  GD      +A  E+ E    EG P  ++ LGFLY  G+    ++ KA +Y
Sbjct:   218 LERVSYALLFGDYLTQNIQAAKEMFEKLTEEGSPKGQTGLGFLYASGLGVNSSQAKALVY 277

Query:   151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
             + F A GGN+ + M + Y Y     + Q   + A+  Y  +A    +   ++  S V++ 
Sbjct:   278 YTFGALGGNLIAHMILGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQR 335

Query:   206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK 265
             IR+ +  E N G +     E+D   Q  ++ A+KG+  A   +G  +  G RG+ ++  +
Sbjct:   336 IRLPDEVE-NPG-MNSGMLEED-LIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQR 392

Query:   266 ALMWFSKAADKGEPQSMEFLGEIYARGAGV--ERNYTKALEWLTHAARQQLYSAYNGIGY 323
             A  +F+ AA+ G   +M FLG++Y+ G+ +  + N T AL +   AA        +G+G 
Sbjct:   393 AFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNET-ALHYFKKAADMGNPVGQSGLGM 451

Query:   324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383
              Y+ G GV+  NY  A +YF+KAA+     G   LG MYY GIGVKRD K A KYF +A+
Sbjct:   452 AYLYGRGVQV-NYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLAS 510

Query:   384 NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKA 443
               GH  AFY LA+M  +G G+ ++ H A  L+K V ERG WS     A  SY   D   A
Sbjct:   511 QGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDEDYNAA 570

Query:   444 FLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503
              + Y  +AE GYEVAQSNAA+ILD+  E ++ +GE+     A  H      W +A+ QG 
Sbjct:   571 VVQYLLLAEQGYEVAQSNAAFILDQR-EATI-VGENETYPRALLH------WNRAASQGY 622

Query:   504 EHAALLIGDAYYYGRGTQRDYERAAEAY-MHARSQSNAQAMFNLGYMHEHGQGLPLDLHL 562
               A + +GD ++YG GT  DYE A   Y + +  Q +AQAMFNLGYMHE G G+  D+HL
Sbjct:   623 TVARIKLGDYHFYGFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHL 682

Query:   563 AKRYYDQALEVDPAAKLPVTLALTSLWIRKNNADSFLVRLIDA-LPEVYPRVEAWVENVF 621
             AKR+YD A E  P A++PV LAL  L +       FL  + +A + +++ +++  ++ + 
Sbjct:   683 AKRFYDMAAEASPDAQVPVFLALCKLGVVY-----FLQYIREANIRDLFTQLD--MDQLL 735

Query:   622 MEEGNVTILTLFVCLL-TVLYLRERQRRN 649
               E ++ ++T+   LL TV+  R+RQ ++
Sbjct:   736 GPEWDLYLMTIIALLLGTVIAYRQRQHQD 764

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034976 "response to endoplasmic reticulum stress" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00150407	hypothetical protein (683 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_16186000001	hypothetical protein (119 aa)			•						0.505
	gw1.I.701.1	hypothetical protein (247 aa)			•						0.501

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	672
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	3e-29
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	5e-26
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	2e-25
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	2e-12
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	2e-07
smart00671	36	smart00671, SEL1, Sel1-like repeats	2e-06
smart00671	36	smart00671, SEL1, Sel1-like repeats	1e-05
smart00671	36	smart00671, SEL1, Sel1-like repeats	1e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-04
smart00671	36	smart00671, SEL1, Sel1-like repeats	3e-04
pfam08238	38	pfam08238, Sel1, Sel1 repeat	8e-04
smart00671	36	smart00671, SEL1, Sel1-like repeats	0.002
pfam08238	38	pfam08238, Sel1, Sel1 repeat	0.003

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score =  117 bits (295), Expect = 3e-29
 Identities = 71/270 (26%), Positives = 108/270 (40%), Gaps = 24/270 (8%)

Query: 226 DDEAFQILEYQ---AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSM 282
           ++ A   L             A+                D  KAL  + KAA+ G+  ++
Sbjct: 17  EENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAKALKSYEKAAELGDAAAL 76

Query: 283 EFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEY 342
             LG++Y  G GV R+ TKA +W   AA   L  A   +G +Y  G GV   +  KA +Y
Sbjct: 77  ALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGV-PLDLVKALKY 135

Query: 343 FEKAADN---EEAGGHYNLGVMYYKG---IGVKRDVKLACKYFLVAANAGHQKAFYQLAK 396
           +EKAA     E A   Y LG+ Y  G   + V  D K A   +  AA  G+  A   L +
Sbjct: 136 YEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGR 195

Query: 397 MFHTGVGLKKNLHMATALYKLVAERGPWSSL--------------SRWALESYLKGDVGK 442
           M+  G+G+ ++L  A   YK  AE+G  ++                   L +  + D  +
Sbjct: 196 MYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQ 255

Query: 443 AFLLYSRMAELGYEVAQSNAAWILDKYGEG 472
           A     +  ELG++ A      +       
Sbjct: 256 ALEWLQKACELGFDNACEALRALKIGLSAR 285

Length = 292

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score =  108 bits (270), Expect = 5e-26
 Identities = 76/330 (23%), Positives = 116/330 (35%), Gaps = 53/330 (16%)

Query: 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTK 338
           P     L       A  E   +   + L+      + +       L   G      +Y K
Sbjct: 1   PLFALLLSGKSLFAAAEENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSA-YPPDYAK 59

Query: 339 AKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMF 398
           A + +EKAA+  +A     LG MY  G GV RD   A  ++  AA  G  +A + L  M+
Sbjct: 60  ALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMY 119

Query: 399 HTGVGLKKNLHMATALYKLVAERG-PWSSLSRWALES-YLKGDVGKAFLLYSRMAELGYE 456
             G G+  +L  A   Y+  A+ G   ++L+ + L   YL G    A     + A   Y 
Sbjct: 120 ANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179

Query: 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYY 516
                                                   +A+E GN  A LL+G  Y  
Sbjct: 180 ----------------------------------------KAAELGNPDAQLLLGRMYEK 199

Query: 517 GRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLP----------LDLHLAKRY 566
           G G  RD ++A   Y  A  Q +  A +NLG M+ +G+G+            D   A  +
Sbjct: 200 GLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEW 259

Query: 567 YDQALEVDPAAKLPVTLALTSLWIRKNNAD 596
             +A E+          AL      + +  
Sbjct: 260 LQKACELGFDNACEALRALKIGLSARGSGR 289

Length = 292

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score =  106 bits (265), Expect = 2e-25
 Identities = 58/182 (31%), Positives = 81/182 (44%), Gaps = 18/182 (9%)

Query: 225 EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQ---S 281
           +  +A       A  G A A++ +GL Y  G RG+  D  KAL ++ KAA  G  +   +
Sbjct: 92  DKTKAADWYRCAAADGLAEALFNLGLMYANG-RGVPLDLVKALKYYEKAAKLGNVEAALA 150

Query: 282 MEFLGEIYARG---AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTK 338
           M  LG  Y  G     V  +  KAL     AA      A   +G +Y KG GV  ++  K
Sbjct: 151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVP-RDLKK 209

Query: 339 AKEYFEKAADNEEAGGHYNLGVMYYKGIGVK----------RDVKLACKYFLVAANAGHQ 388
           A  +++KAA+  +    YNLG+MY  G GVK           D K A ++   A   G  
Sbjct: 210 AFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269

Query: 389 KA 390
            A
Sbjct: 270 NA 271

Length = 292

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 68/257 (26%), Positives = 103/257 (40%), Gaps = 64/257 (24%)

Query: 109 EEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGN--IQSKMAV 166
            +A    E AA  GD  A ++LG +YG G    R+K KA  ++  AA  G       + +
Sbjct: 58  AKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGL 117

Query: 167 AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED 226
            Y       + + V L                                          + 
Sbjct: 118 MY------ANGRGVPL------------------------------------------DL 129

Query: 227 DEAFQILEYQAQKGNAGA---MYKIGLFYYFGL--RGLRRDRTKALMWFSKAADKGEPQS 281
            +A +  E  A+ GN  A   MY++GL Y  GL    +  D  KAL  + KAA+ G P +
Sbjct: 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDA 189

Query: 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEK-------- 333
              LG +Y +G GV R+  KA  W   AA Q   +A   +G +Y+ G GV+K        
Sbjct: 190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAK 249

Query: 334 -KNYTKAKEYFEKAADN 349
            ++  +A E+ +KA + 
Sbjct: 250 EEDKKQALEWLQKACEL 266

Length = 292

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 54/213 (25%), Positives = 81/213 (38%), Gaps = 51/213 (23%)

Query: 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVA 167
             +A      AA +G   A   LG +Y  G     +  KA  Y+  AA+ GN+++ +A  
Sbjct: 93  KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALA-- 150

Query: 168 YTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDD 227
                  M+   +   + L  +AV                                  D 
Sbjct: 151 -------MYRLGLAYLSGLQALAVAYD-------------------------------DK 172

Query: 228 EAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGE 287
           +A  +    A+ GN  A   +G  Y  GL G+ RD  KA  W+ KAA++G+  +   LG 
Sbjct: 173 KALYLYRKAAELGNPDAQLLLGRMYEKGL-GVPRDLKKAFRWYKKAAEQGDGAACYNLGL 231

Query: 288 IYARGAGV----------ERNYTKALEWLTHAA 310
           +Y  G GV          E +  +ALEWL  A 
Sbjct: 232 MYLNGEGVKKAAFLTAAKEEDKKQALEWLQKAC 264

Length = 292

>gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH 387
           A   YNLG MY  G+GV +D++ A +Y+  AA  G+
Sbjct: 1   AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36

These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36

>gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 540 AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQA 570
           A+A +NLG M+E+G G+P DL  A  YY +A
Sbjct: 1   AEAQYNLGQMYEYGLGVPKDLEKALEYYKKA 31

These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36

>gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG 277
           A A Y +G  Y +GL G+ +D  KAL ++ KAA+ G
Sbjct: 1   AEAQYNLGQMYEYGL-GVPKDLEKALEYYKKAAELG 35

These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA--ADNEE 351
             +Y +ALE+   A         AY  +   Y K        Y +A E +EKA   D + 
Sbjct: 13  LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-----LGKYEEALEDYEKALELDPDN 67

Query: 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382
           A  +YNLG+ YYK        + A + +  A
Sbjct: 68  AKAYYNLGLAYYK----LGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313
            ++   LG++Y  G GV ++  KALE+   AA   
Sbjct: 1   AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35

These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36

>gnl|CDD|219757 pfam08238, Sel1, Sel1 repeat

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 356 YNLGV--MYYKGIGVKRDVKLACKYFLVAANAGH 387
           YNLG+  MY  G+GV +D + A +++  AA  G+
Sbjct: 5   YNLGLYYMYLNGLGVPKDYEKALEWYRKAAEQGN 38

This short repeat is found in the Sel1 protein. It is related to TPR repeats. Length = 38

>gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349
           A   +G +Y  G GV  K+  KA EY++KAA+ 
Sbjct: 3   AQYNLGQMYEYGLGV-PKDLEKALEYYKKAAEL 34

These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36

>gnl|CDD|219757 pfam08238, Sel1, Sel1 repeat

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 242 AGAMYKIGLFYYFGL-RGLRRDRTKALMWFSKAADKG 277
           A A Y +GL+Y +    G+ +D  KAL W+ KAA++G
Sbjct: 1   AEAQYNLGLYYMYLNGLGVPKDYEKALEWYRKAAEQG 37

This short repeat is found in the Sel1 protein. It is related to TPR repeats. Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	672
KOG1550	552	consensus Extracellular protein SEL-1 and related	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
KOG1550	552	consensus Extracellular protein SEL-1 and related	99.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.95
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.95
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.94
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.93
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.92
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.9
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.89
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	99.85
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	99.83
KOG2003	840	consensus TPR repeat-containing protein [General f	99.83
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.79
PRK14574	822	hmsH outer membrane protein; Provisional	99.78
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.76
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.76
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.76
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.76
PLN03218	1060	maturation of RBCL 1; Provisional	99.75
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.75
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.75
KOG2003	840	consensus TPR repeat-containing protein [General f	99.75
PLN03218	1060	maturation of RBCL 1; Provisional	99.73
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.72
PLN03077	857	Protein ECB2; Provisional	99.7
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.7
KOG1126	638	consensus DNA-binding cell division cycle control	99.7
KOG1126	638	consensus DNA-binding cell division cycle control	99.7
PLN03077	857	Protein ECB2; Provisional	99.67
KOG1129	478	consensus TPR repeat-containing protein [General f	99.65
PRK14574	822	hmsH outer membrane protein; Provisional	99.65
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.61
PRK11189	296	lipoprotein NlpI; Provisional	99.57
PRK12370	553	invasion protein regulator; Provisional	99.57
PRK12370	553	invasion protein regulator; Provisional	99.57
KOG2076	895	consensus RNA polymerase III transcription factor	99.57
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.54
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.54
KOG1129	478	consensus TPR repeat-containing protein [General f	99.54
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.53
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.49
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.49
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.48
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.48
PRK11189	296	lipoprotein NlpI; Provisional	99.48
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.47
KOG4014	248	consensus Uncharacterized conserved protein (conta	99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.46
KOG2076	895	consensus RNA polymerase III transcription factor	99.44
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.43
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.43
KOG4014	248	consensus Uncharacterized conserved protein (conta	99.42
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.42
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.4
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.39
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.39
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.38
KOG1125	579	consensus TPR repeat-containing protein [General f	99.37
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.37
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.34
KOG1125	579	consensus TPR repeat-containing protein [General f	99.34
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.3
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.3
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.28
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.27
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.23
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.22
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.22
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.2
PLN02789	320	farnesyltranstransferase	99.18
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.13
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.12
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.1
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.08
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.05
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.04
PRK04841	903	transcriptional regulator MalT; Provisional	99.0
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.97
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.97
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.96
PLN02789	320	farnesyltranstransferase	98.96
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.94
PRK15359	144	type III secretion system chaperone protein SscB;	98.91
PRK04841	903	transcriptional regulator MalT; Provisional	98.91
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.88
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.84
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.82
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.81
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.8
PRK15359	144	type III secretion system chaperone protein SscB;	98.8
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.77
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.75
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.75
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.74
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.73
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.73
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.72
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.71
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.69
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.66
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.65
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.65
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.59
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.56
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.53
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.48
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.47
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.47
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.46
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.45
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.4
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.39
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.39
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.38
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.3
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.28
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.25
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.25
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.25
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.24
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.2
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.17
PF12688	120	TPR_5: Tetratrico peptide repeat	98.16
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.15
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.15
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.14
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.12
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.12
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.11
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.1
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.09
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.09
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.07
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.07
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.06
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.05
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.04
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.0
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.0
KOG0553	304	consensus TPR repeat-containing protein [General f	97.99
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.98
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.98
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.97
KOG1586	288	consensus Protein required for fusion of vesicles	97.95
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.95
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.95
PF12688	120	TPR_5: Tetratrico peptide repeat	97.93
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.91
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.9
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.9
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.89
PRK10803	263	tol-pal system protein YbgF; Provisional	97.89
KOG0553	304	consensus TPR repeat-containing protein [General f	97.87
PRK11906	458	transcriptional regulator; Provisional	97.86
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.83
PRK10803	263	tol-pal system protein YbgF; Provisional	97.83
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.78
KOG2471	696	consensus TPR repeat-containing protein [General f	97.72
PRK11906	458	transcriptional regulator; Provisional	97.7
PRK15331	165	chaperone protein SicA; Provisional	97.68
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.67
PRK15331	165	chaperone protein SicA; Provisional	97.67
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.66
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.62
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.61
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.61
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.58
KOG1586	288	consensus Protein required for fusion of vesicles	97.57
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.56
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	97.54
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.5
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.5
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.49
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.42
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.41
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.39
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	97.37
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.33
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.33
KOG4555	175	consensus TPR repeat-containing protein [Function	97.31
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.3
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	97.29
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	97.21
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.1
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.07
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.03
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.02
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.01
KOG4555	175	consensus TPR repeat-containing protein [Function	96.99
PF13371	73	TPR_9: Tetratricopeptide repeat	96.94
PF13371	73	TPR_9: Tetratricopeptide repeat	96.88
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.85
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.79
KOG2471	696	consensus TPR repeat-containing protein [General f	96.72
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.7
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.59
KOG1585	308	consensus Protein required for fusion of vesicles	96.52
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.45
KOG1585	308	consensus Protein required for fusion of vesicles	96.43
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.39
PF13512	142	TPR_18: Tetratricopeptide repeat	96.39
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.34
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.2
PF13428	44	TPR_14: Tetratricopeptide repeat	96.17
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.07
PF13428	44	TPR_14: Tetratricopeptide repeat	96.02
PF13512	142	TPR_18: Tetratricopeptide repeat	96.01
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.98
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.95
PF13431	34	TPR_17: Tetratricopeptide repeat	95.95
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.8
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.74
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.67
PF13431	34	TPR_17: Tetratricopeptide repeat	95.53
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.5
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.38
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.21
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.01
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	94.88
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.65
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.64
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	94.59
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.48
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.48
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.43
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.21
KOG4234	271	consensus TPR repeat-containing protein [General f	94.19
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	94.07
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.01
KOG4234	271	consensus TPR repeat-containing protein [General f	93.87
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.79
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.75
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.69
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	93.67
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.25
KOG4648	536	consensus Uncharacterized conserved protein, conta	93.19
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	93.17
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.12
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	91.79
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.68
KOG4648	536	consensus Uncharacterized conserved protein, conta	91.55
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.09
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	90.71
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.57
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	90.35
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.41
PF03704	146	BTAD: Bacterial transcriptional activator domain;	89.15
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	89.04
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	88.84
PF03704	146	BTAD: Bacterial transcriptional activator domain;	88.5
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.85
COG3118	304	Thioredoxin domain-containing protein [Posttransla	87.71
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.7
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	87.54
KOG2300	629	consensus Uncharacterized conserved protein [Funct	87.42
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	87.34
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	86.56
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	85.68
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	85.52
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	85.05
KOG3364	149	consensus Membrane protein involved in organellar	84.49
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	84.46
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	84.43
COG4976	287	Predicted methyltransferase (contains TPR repeat)	84.32
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	82.86
KOG3783	546	consensus Uncharacterized conserved protein [Funct	82.57
KOG3364	149	consensus Membrane protein involved in organellar	82.53
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	81.3
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	81.17
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.09

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-36  Score=333.25  Aligned_cols=425  Identities=41%  Similarity=0.592  Sum_probs=351.6

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCc-ccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc-----CCHHHHHH
Q 005877          108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMM-RERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQ-----DMHDKAVK  181 (672)
Q Consensus       108 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g-~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~-----~~~~~A~~  181 (672)
                      +..+...++.+...+++.++..++..+..|.+ +..+..++...|...+.+++..+.+.++..+...     .+++.++.
T Consensus       107 ~~~~~~~~~~~~~sg~~~a~~~l~~~~~~~~~~~~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~  186 (552)
T KOG1550|consen  107 IEFAVEEYELAAKSGNPKAHRNLGFKYLSGLSGVTSSQAKALVHYELSALGSNSPSSMRLGFSYLHGLGGVRRSEEKALS  186 (552)
T ss_pred             ccccchhhhcccccCCHHHHHHHHHhhhhhcCCCCccHhhcchhhhccccCCCCcchhhhhhhhhccCCCccchhhHhhh
Confidence            36888889888999999999999999999987 8899999999999998889999999999999874     45777777


Q ss_pred             -HHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 005877          182 -LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR  260 (672)
Q Consensus       182 -~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~  260 (672)
                       .|+.+...........                                          ..+.++..  .+...+ .+..
T Consensus       187 ~~~~~~~s~~~~~~~~~------------------------------------------~~~~~~~~--~~~~~~-~~~~  221 (552)
T KOG1550|consen  187 KHYNKAASSTSSDATFS------------------------------------------LGPNAQRL--QLSLEG-EGNE  221 (552)
T ss_pred             hhhhhccCccccccccC------------------------------------------CCcchhhh--hccccc-cCcc
Confidence             7766544221110000                                          01111111  222222 1222


Q ss_pred             cC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHcC
Q 005877          261 RD----RTKALMWFSKAADKGEPQSMEFLGEIYARG-AGVERNYTKALEWLTHAAR-------QQLYSAYNGIGYLYVKG  328 (672)
Q Consensus       261 ~~----~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g-~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~Lg~~y~~g  328 (672)
                      .+    ...|+++|+.+++.|+..+++.+|.+|..| .|+.+|.++|+.||+.+++       .+++.+++.+|.+|..|
T Consensus       222 ~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  222 RNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQG  301 (552)
T ss_pred             cccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcC
Confidence            22    566777777777777777777777777777 7777777777777777766       78899999999999998


Q ss_pred             CCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCH
Q 005877          329 YGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNL  408 (672)
Q Consensus       329 ~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~  408 (672)
                      .++..-|+++|+.+|.++++.+++++++.||.+|..|. ..+|..+|.+||..|++.|+..|+++++.||..|.|++.++
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~  380 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL  380 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence            87765589999999999999999999999999999986 45899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHh
Q 005877          409 HMATALYKLVAERGPWSSLSRWALESYLK-GDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAER  487 (672)
Q Consensus       409 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~  487 (672)
                      .+|..||+++++.+++.+.+.++..+... +.+..+...+....+.|++.++.+.+++.+....   .+...+   ...+
T Consensus       381 ~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~---~~~~~~---~~~~  454 (552)
T KOG1550|consen  381 ELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEE---DLFSRG---VIST  454 (552)
T ss_pred             HHHHHHHHHHHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccc---cccccc---cccc
Confidence            99999999999999999888887765433 8999999999999999999999999999887421   111111   1447


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 005877          488 HQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYY  567 (672)
Q Consensus       488 ~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  567 (672)
                      ...+...|.++..++++.+.+.||++|++|.|+.+|+.+|..+|.+|.+++ ++++++||+||++|.|+++ .+.|++||
T Consensus       455 ~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~-~~~a~~~~  532 (552)
T KOG1550|consen  455 LERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKV-LHLAKRYY  532 (552)
T ss_pred             hhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcch-hHHHHHHH
Confidence            889999999999999999999999999999999999999999999999999 9999999999999999999 99999999


Q ss_pred             HHHHhcCCCCcchhHHHHH
Q 005877          568 DQALEVDPAAKLPVTLALT  586 (672)
Q Consensus       568 ~~A~~~~~~~~~~~~~~~~  586 (672)
                      +++.+.++++.+|+.+.+.
T Consensus       533 ~~~~~~~~~~~~~~~~~~~  551 (552)
T KOG1550|consen  533 DQASEEDSRAYLPVKLALL  551 (552)
T ss_pred             HHHHhcCchhhhHHHHHhh
Confidence            9999999999998877653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-34  Score=290.20  Aligned_cols=410  Identities=18%  Similarity=0.153  Sum_probs=353.2

Q ss_pred             hhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCHHHHH
Q 005877          105 VRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV  180 (672)
Q Consensus       105 ~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~~~~~~~A~  180 (672)
                      .+||++|.+....  ..++.+.+....++.+|.+    .++.++....-..+++.  .-.+++.++|.++...|+.+.|+
T Consensus        61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q----~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al  136 (966)
T KOG4626|consen   61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQ----GSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDAL  136 (966)
T ss_pred             ccCHHHHHHHHhHhhccCCCcccceeeehhhhhc----ccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHH
Confidence            5889999998888  4556777888888888888    66777777777777764  44688889999999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCC
Q 005877          181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLRG  258 (672)
Q Consensus       181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~~  258 (672)
                      .+|+.++++.++.                .++..+++..+...|+.+.|.+.|..+...+  ...+...+|.++-..   
T Consensus       137 ~~y~~aiel~p~f----------------ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~---  197 (966)
T KOG4626|consen  137 ALYRAAIELKPKF----------------IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE---  197 (966)
T ss_pred             HHHHHHHhcCchh----------------hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh---
Confidence            9999998876542                2456678888999999999999999886654  678888999998776   


Q ss_pred             cccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcC
Q 005877          259 LRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKK  334 (672)
Q Consensus       259 ~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~  334 (672)
                        +...+|...|.||++  +..+.++.+||-.+..    +|+...|+..|++|++.  +.+.++.+||.+|..     .+
T Consensus       198 --Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~----~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke-----~~  266 (966)
T KOG4626|consen  198 --GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNA----QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE-----AR  266 (966)
T ss_pred             --cccchhHHHHHHHHhhCCceeeeehhcchHHhh----cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH-----Hh
Confidence              489999999999987  4678889999999988    99999999999999875  488999999999975     45


Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHH
Q 005877          335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHM  410 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~  410 (672)
                      .++.|+.+|.+|+..  +++.++-|||.+|..    +|+.+-|+..|+++++  +..++|+.|||..+..    .|+..+
T Consensus       267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye----qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd----~G~V~e  338 (966)
T KOG4626|consen  267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYE----QGLLDLAIDTYKRALELQPNFPDAYNNLANALKD----KGSVTE  338 (966)
T ss_pred             cchHHHHHHHHHHhcCCcchhhccceEEEEec----cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh----ccchHH
Confidence            899999999999876  588999999999999    8999999999999977  4578999999999988    899999


Q ss_pred             HHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchH
Q 005877          411 ATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAE  486 (672)
Q Consensus       411 A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~  486 (672)
                      |+.+|.+++...  +++++++||.++.+.|.+++|...|+++++-  +...+++|||.+|..                ++
T Consensus       339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq----------------qg  402 (966)
T KOG4626|consen  339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ----------------QG  402 (966)
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh----------------cc
Confidence            999999999887  5789999999999999999999999999765  578889999999988                88


Q ss_pred             hHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHH
Q 005877          487 RHQCAHSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHL  562 (672)
Q Consensus       487 ~~~~A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~  562 (672)
                      ++++|+..|+.++.-  .-++++.|+|..|-    .++|.+.|+++|.+|+..  --++|..|||.+|..    .|+..+
T Consensus       403 nl~~Ai~~YkealrI~P~fAda~~NmGnt~k----e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD----sGni~~  474 (966)
T KOG4626|consen  403 NLDDAIMCYKEALRIKPTFADALSNMGNTYK----EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD----SGNIPE  474 (966)
T ss_pred             cHHHHHHHHHHHHhcCchHHHHHHhcchHHH----HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc----cCCcHH
Confidence            999999999987554  45899999999999    899999999999999875  468899999999987    899999


Q ss_pred             HHHHHHHHHhcCCCCcch
Q 005877          563 AKRYYDQALEVDPAAKLP  580 (672)
Q Consensus       563 A~~~~~~A~~~~~~~~~~  580 (672)
                      |+.-|+.|+.++||..-.
T Consensus       475 AI~sY~~aLklkPDfpdA  492 (966)
T KOG4626|consen  475 AIQSYRTALKLKPDFPDA  492 (966)
T ss_pred             HHHHHHHHHccCCCCchh
Confidence            999999999999987533

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-34  Score=290.68  Aligned_cols=422  Identities=17%  Similarity=0.125  Sum_probs=365.1

Q ss_pred             cccccCCCCCCcccccCC--CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcC
Q 005877           62 MTEENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME--GDPHARSVLGFLYGMG  137 (672)
Q Consensus        62 ~~~~~~~~~~a~~~~~~~--~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G  137 (672)
                      +....+||.+|++.-...  -++.+.+.+..++..+..       -.++++..+.-..+...  .-.+++.++|.+|.. 
T Consensus        57 ~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q-------~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke-  128 (966)
T KOG4626|consen   57 RLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQ-------GSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE-  128 (966)
T ss_pred             HHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhc-------ccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH-
Confidence            345667888888655444  234444444444544442       35566776666665554  458899999999999 


Q ss_pred             CcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhh
Q 005877          138 MMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEEN  215 (672)
Q Consensus       138 ~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  215 (672)
                         .++...|+.+|+.+++  +.+++++.+||.++..+|+.+.|...|.+++..+|..++                +..+
T Consensus       129 ---rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c----------------a~s~  189 (966)
T KOG4626|consen  129 ---RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC----------------ARSD  189 (966)
T ss_pred             ---hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh----------------hhcc
Confidence               9999999999999997  688999999999999999999999999999998765443                2345


Q ss_pred             hhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 005877          216 KGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYAR  291 (672)
Q Consensus       216 ~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  291 (672)
                      +|.+...+|+..+|...|.++++.  .-+-++.+||-++...     ++...|+.+|++|++.  ..+.|+++||.+|..
T Consensus       190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~-----Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke  264 (966)
T KOG4626|consen  190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQ-----GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE  264 (966)
T ss_pred             hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhc-----chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH
Confidence            888999999999999999999766  5788999999999877     4999999999999874  689999999999999


Q ss_pred             CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCC
Q 005877          292 GAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIG  367 (672)
Q Consensus       292 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g  367 (672)
                          ...++.|+..|.+|+..  +++.++.+||.+|..     +|+.+.|+..|+++++.  ..++|+.|||..+..   
T Consensus       265 ----~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye-----qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd---  332 (966)
T KOG4626|consen  265 ----ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE-----QGLLDLAIDTYKRALELQPNFPDAYNNLANALKD---  332 (966)
T ss_pred             ----HhcchHHHHHHHHHHhcCCcchhhccceEEEEec-----cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh---
Confidence                99999999999999865  588899999999974     88999999999999887  489999999999999   


Q ss_pred             chhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHH
Q 005877          368 VKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKA  443 (672)
Q Consensus       368 ~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A  443 (672)
                       .|+..+|..+|.+|+.  ..++++++|||.+|.+    .+.++.|..+|+++++..|  ..+..+||.+|-.+|++++|
T Consensus       333 -~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~A  407 (966)
T KOG4626|consen  333 -KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDA  407 (966)
T ss_pred             -ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHH
Confidence             8999999999999987  5699999999999999    9999999999999999886  56799999999999999999


Q ss_pred             HHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCC
Q 005877          444 FLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--EHAALLIGDAYYYGRG  519 (672)
Q Consensus       444 ~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lG~~y~~g~g  519 (672)
                      +..|++|+..  ....+++|+|..|..                .++...|+++|.+|+.-++  ++|..|||.+|.    
T Consensus       408 i~~YkealrI~P~fAda~~NmGnt~ke----------------~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k----  467 (966)
T KOG4626|consen  408 IMCYKEALRIKPTFADALSNMGNTYKE----------------MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK----  467 (966)
T ss_pred             HHHHHHHHhcCchHHHHHHhcchHHHH----------------hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh----
Confidence            9999999765  477889999999988                8899999999999988776  889999999999    


Q ss_pred             CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHc
Q 005877          520 TQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEH  552 (672)
Q Consensus       520 ~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~  552 (672)
                      ..|+..+|+..|+.|++  ++.|+|.-||..++.-
T Consensus       468 DsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~  502 (966)
T KOG4626|consen  468 DSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI  502 (966)
T ss_pred             ccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence            78999999999999987  4889999999887643

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=6.5e-27  Score=277.19  Aligned_cols=438  Identities=17%  Similarity=0.145  Sum_probs=227.5

Q ss_pred             ccCCCCCCcccccCCC--CCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh----------------------
Q 005877           65 ENLDPGSWSPVFEPSI--DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM----------------------  120 (672)
Q Consensus        65 ~~~~~~~a~~~~~~~~--~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~----------------------  120 (672)
                      ..+++++|...|+++.  ++.++...+.++..++.       .+++++|+..++++..                      
T Consensus       375 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  447 (899)
T TIGR02917       375 ALGDFEKAAEYLAKATELDPENAAARTQLGISKLS-------QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQF  447 (899)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-------CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCH
Confidence            3456666666666552  24444455555555442       3455555555555332                      


Q ss_pred             --------------CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005877          121 --------------EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYA  184 (672)
Q Consensus       121 --------------~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~  184 (672)
                                    ++++..+..+|.+|..    .+++++|+.+|+++..  +++..+++.+|.++...|++++|+.+|+
T Consensus       448 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  523 (899)
T TIGR02917       448 DKALAAAKKLEKKQPDNASLHNLLGAIYLG----KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE  523 (899)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                          2344444555555544    4455555555555443  3444555555555555555555555555


Q ss_pred             HHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccC
Q 005877          185 ELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRD  262 (672)
Q Consensus       185 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~  262 (672)
                      ++++..+..                ..+...++.++...|++++|+.+++++...  ++....+.++.+|...     ++
T Consensus       524 ~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~  582 (899)
T TIGR02917       524 KVLTIDPKN----------------LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK-----GQ  582 (899)
T ss_pred             HHHHhCcCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHC-----CC
Confidence            544432211                011223444455555555555555554332  3445555555555544     25


Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHH
Q 005877          263 RTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTK  338 (672)
Q Consensus       263 ~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~  338 (672)
                      +++|+.+++++++  +.++.++..+|.+|..    .+++++|+..|+++++.  .++.++..+|.+|..     .+++++
T Consensus       583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~  653 (899)
T TIGR02917       583 LKKALAILNEAADAAPDSPEAWLMLGRAQLA----AGDLNKAVSSFKKLLALQPDSALALLLLADAYAV-----MKNYAK  653 (899)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----cCCHHH
Confidence            5555555555544  2345555555555555    55555555555555543  244555555555543     345555


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHH
Q 005877          339 AKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATAL  414 (672)
Q Consensus       339 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~  414 (672)
                      |+.+|+++++.  ++..++..++.++..    .+++++|+..++...+.  .++..+..+|.++..    .+++++|+.+
T Consensus       654 A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~  725 (899)
T TIGR02917       654 AITSLKRALELKPDNTEAQIGLAQLLLA----AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR----QKDYPAAIQA  725 (899)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH----CCCHHHHHHH
Confidence            55555555543  244555555555555    55555555555555442  234455555555554    5556666666


Q ss_pred             HHHHHHcCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHH
Q 005877          415 YKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCA  491 (672)
Q Consensus       415 ~~~a~~~~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A  491 (672)
                      |+++++..+ ......++..+...|++++|+..++++++.  +++.+.+++|.++..                .++.++|
T Consensus       726 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----------------~g~~~~A  789 (899)
T TIGR02917       726 YRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA----------------QKDYDKA  789 (899)
T ss_pred             HHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------------CcCHHHH
Confidence            666555542 234455555555566666666666555433  345555555555554                4455666


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 005877          492 HSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYY  567 (672)
Q Consensus       492 ~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  567 (672)
                      +.+|+++++.  .++.++.++|+++.    ..++ .+|+.+++++++.  +++..+.++|.++..    .+++++|+++|
T Consensus       790 ~~~~~~~~~~~p~~~~~~~~l~~~~~----~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~  860 (899)
T TIGR02917       790 IKHYRTVVKKAPDNAVVLNNLAWLYL----ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE----KGEADRALPLL  860 (899)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH----hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHH
Confidence            6666654333  33555556666665    4445 5566666665442  455555666666554    55666666666


Q ss_pred             HHHHhcCCC
Q 005877          568 DQALEVDPA  576 (672)
Q Consensus       568 ~~A~~~~~~  576 (672)
                      +++++.+|.
T Consensus       861 ~~a~~~~~~  869 (899)
T TIGR02917       861 RKAVNIAPE  869 (899)
T ss_pred             HHHHhhCCC
Confidence            666666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=5.1e-27  Score=278.08  Aligned_cols=432  Identities=18%  Similarity=0.114  Sum_probs=369.6

Q ss_pred             CCCCCCcccccCCC--CCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccC
Q 005877           67 LDPGSWSPVFEPSI--DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRER  142 (672)
Q Consensus        67 ~~~~~a~~~~~~~~--~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~  142 (672)
                      +++++|...+++..  .++++...+.+|..+..       .+++++|+..|+++.  +++++.+.+.+|.++..    .+
T Consensus       445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g  513 (899)
T TIGR02917       445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG-------KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ----EG  513 (899)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHh-------CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----CC
Confidence            34444444444442  24455566666666553       589999999999954  56889999999999998    89


Q ss_pred             CHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhh
Q 005877          143 NKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR  220 (672)
Q Consensus       143 d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  220 (672)
                      ++++|..+|++++.  +++..++..++.++...|++++|+.+++++++..+...                .....++..+
T Consensus       514 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~  577 (899)
T TIGR02917       514 NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI----------------EPALALAQYY  577 (899)
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch----------------hHHHHHHHHH
Confidence            99999999999976  67899999999999999999999999999987643221                2234578889


Q ss_pred             hccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc
Q 005877          221 KSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVE  296 (672)
Q Consensus       221 ~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~  296 (672)
                      ...|++++|+..++++.+.  .++.++..+|.+|...     +++++|+.+|+++++  +.++.++..+|.+|..    .
T Consensus       578 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  648 (899)
T TIGR02917       578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA-----GDLNKAVSSFKKLLALQPDSALALLLLADAYAV----M  648 (899)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----c
Confidence            9999999999999998765  5899999999999988     499999999999987  4678999999999999    9


Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcH
Q 005877          297 RNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDV  372 (672)
Q Consensus       297 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~  372 (672)
                      +++++|+.+|+++++.  ++..++..++.++..     .+++++|+.++++..+.  .++..+..+|.++..    .+++
T Consensus       649 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~  719 (899)
T TIGR02917       649 KNYAKAITSLKRALELKPDNTEAQIGLAQLLLA-----AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR----QKDY  719 (899)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH----CCCH
Confidence            9999999999999875  478899999999986     57999999999999876  477888999999999    8999


Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877          373 KLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSR  449 (672)
Q Consensus       373 ~~A~~~~~~A~~~~-~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~  449 (672)
                      ++|+.+|+++++.. ......+++.++..    .+++++|+..++++++..|  +.++..+|..+...|++++|+.+|++
T Consensus       720 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  795 (899)
T TIGR02917       720 PAAIQAYRKALKRAPSSQNAIKLHRALLA----SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRT  795 (899)
T ss_pred             HHHHHHHHHHHhhCCCchHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            99999999998754 34778889999987    8999999999999998874  56788999999999999999999999


Q ss_pred             HHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHH
Q 005877          450 MAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYE  525 (672)
Q Consensus       450 a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~  525 (672)
                      +++.  .++.++.++++++..                .++ .+|+.+++++.+  ++++..+.++|.++.    ..++++
T Consensus       796 ~~~~~p~~~~~~~~l~~~~~~----------------~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~  854 (899)
T TIGR02917       796 VVKKAPDNAVVLNNLAWLYLE----------------LKD-PRALEYAEKALKLAPNIPAILDTLGWLLV----EKGEAD  854 (899)
T ss_pred             HHHhCCCCHHHHHHHHHHHHh----------------cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH----HcCCHH
Confidence            9766  478889999999987                556 779999998755  467888899999999    899999


Q ss_pred             HHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877          526 RAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE  572 (672)
Q Consensus       526 ~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  572 (672)
                      +|+.+|+++++.  .++.+.++++.+|..    .|+.++|++.++++++
T Consensus       855 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       855 RALPLLRKAVNIAPEAAAIRYHLALALLA----TGRKAEARKELDKLLN  899 (899)
T ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHhC
Confidence            999999999874  689999999999988    8999999999999863

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.96  E-value=9.4e-28  Score=263.18  Aligned_cols=413  Identities=28%  Similarity=0.342  Sum_probs=345.2

Q ss_pred             CCCCcccccCCCCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCc-ccCCHHHH
Q 005877           69 PGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMM-RERNKGKA  147 (672)
Q Consensus        69 ~~~a~~~~~~~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g-~~~d~~~A  147 (672)
                      ...+...++.+.+.+++.+...++..+...-  .+...+..++...|.....+++......++..|..|.+ +..+.+.|
T Consensus       107 ~~~~~~~~~~~~~sg~~~a~~~l~~~~~~~~--~~~~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a  184 (552)
T KOG1550|consen  107 IEFAVEEYELAAKSGNPKAHRNLGFKYLSGL--SGVTSSQAKALVHYELSALGSNSPSSMRLGFSYLHGLGGVRRSEEKA  184 (552)
T ss_pred             ccccchhhhcccccCCHHHHHHHHHhhhhhc--CCCCccHhhcchhhhccccCCCCcchhhhhhhhhccCCCccchhhHh
Confidence            3456666777777778888888888877431  22567888999999999888999999999999999987 89999999


Q ss_pred             HH-HHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCCh
Q 005877          148 FL-YHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED  226 (672)
Q Consensus       148 ~~-~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~  226 (672)
                      .. .+..++..........+|..-...           ...                         ..+.+......++.
T Consensus       185 ~~~~~~~~~s~~~~~~~~~~~~~~~~~-----------~~~-------------------------~~~~~~~~~~~~~~  228 (552)
T KOG1550|consen  185 LSKHYNKAASSTSSDATFSLGPNAQRL-----------QLS-------------------------LEGEGNERNESGEL  228 (552)
T ss_pred             hhhhhhhccCccccccccCCCcchhhh-----------hcc-------------------------ccccCcccccchhh
Confidence            99 999998877666665555211110           000                         00011111122356


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHcCCCCcC-C
Q 005877          227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD-------KGEPQSMEFLGEIYARGAGVER-N  298 (672)
Q Consensus       227 ~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~Lg~~y~~g~g~~~-~  298 (672)
                      .+|+.+++.+++.|+..+++.+|.+|+.|..|+.+|.++|+.||+.+++       .+++.+++.+|.+|..|.++.. |
T Consensus       229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d  308 (552)
T KOG1550|consen  229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKID  308 (552)
T ss_pred             hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcccc
Confidence            7899999999999999999999999999988999999999999999998       7899999999999999999888 9


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHH
Q 005877          299 YTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKY  378 (672)
Q Consensus       299 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  378 (672)
                      +++|+.+|.++++.+++.+++.||.+|..|. ..+ |+.+|.+||..|++.|+..|+++++.||..|.|+..+..+|..|
T Consensus       309 ~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~-d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~  386 (552)
T KOG1550|consen  309 YEKALKLYTKAAELGNPDAQYLLGVLYETGT-KER-DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY  386 (552)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence            9999999999999999999999999999986 234 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc----------CCHHHHHHHHH
Q 005877          379 FLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLK----------GDVGKAFLLYS  448 (672)
Q Consensus       379 ~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~----------g~~~~A~~~~~  448 (672)
                      |+++++.+++.+.+.++.+++.|.   +..+.+...+....+.+...+..+...+....          .+.+.++..+.
T Consensus       387 ~k~aA~~g~~~A~~~~~~~~~~g~---~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~  463 (552)
T KOG1550|consen  387 YKKAAEKGNPSAAYLLGAFYEYGV---GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYS  463 (552)
T ss_pred             HHHHHHccChhhHHHHHHHHHHcc---ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHH
Confidence            999999999999999999999975   77777777777777777655544443332222          26789999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 005877          449 RMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAA  528 (672)
Q Consensus       449 ~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~  528 (672)
                      ++..+|+..+...++.+|...            .....++++|..+|.++.+++ +.++++||++|..|.|.++ +..|.
T Consensus       464 ~a~~~g~~~a~~~lgd~y~~g------------~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~-~~~a~  529 (552)
T KOG1550|consen  464 RAAAQGNADAILKLGDYYYYG------------LGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKV-LHLAK  529 (552)
T ss_pred             HHHhccCHHHHhhhcceeeec------------CCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcch-hHHHH
Confidence            999999999999999988652            112557999999999999999 9999999999999999999 99999


Q ss_pred             HHHHHHHhcC
Q 005877          529 EAYMHARSQS  538 (672)
Q Consensus       529 ~~~~~A~~~~  538 (672)
                      ++|.++.+.+
T Consensus       530 ~~~~~~~~~~  539 (552)
T KOG1550|consen  530 RYYDQASEED  539 (552)
T ss_pred             HHHHHHHhcC
Confidence            9999998854

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=5.7e-25  Score=263.82  Aligned_cols=328  Identities=18%  Similarity=0.179  Sum_probs=215.5

Q ss_pred             hHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC--CHH------------
Q 005877          217 GALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQ------------  280 (672)
Q Consensus       217 ~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~------------  280 (672)
                      +..+...|++++|+..|+++...  +++.+++.||.+|...     +++++|+.+|+++++..  ++.            
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~-----g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~  350 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQ-----GDRARAVAQFEKALALDPHSSNRDKWESLLKVNR  350 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence            44455566666666666665443  4666666666666665     36666666666666531  111            


Q ss_pred             --HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHH
Q 005877          281 --SMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGG  354 (672)
Q Consensus       281 --a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a  354 (672)
                        ....+|.++..    .+++++|+..|+++++.  +++.++..||.+|..     .|++++|+.+|+++++.  +++.+
T Consensus       351 ~~~~~~~g~~~~~----~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~-----~g~~~eA~~~y~~aL~~~p~~~~a  421 (1157)
T PRK11447        351 YWLLIQQGDAALK----ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA-----RKDYAAAERYYQQALRMDPGNTNA  421 (1157)
T ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCCCCHHH
Confidence              11234555555    66666666666666654  355666666666664     45666666666666654  35566


Q ss_pred             HHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC
Q 005877          355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP  423 (672)
Q Consensus       355 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----------~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~  423 (672)
                      +..++.+|..     ++.++|+.++++.....           ....+..+|.++..    .+++++|+.+|+++++..|
T Consensus       422 ~~~L~~l~~~-----~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~----~g~~~eA~~~~~~Al~~~P  492 (1157)
T PRK11447        422 VRGLANLYRQ-----QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN----QGKWAQAAELQRQRLALDP  492 (1157)
T ss_pred             HHHHHHHHHh-----cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC
Confidence            6666666643     24556665554321110           11233445566655    7899999999999998875


Q ss_pred             --hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCC-----c-ccCC---------------
Q 005877          424 --WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGS-----M-CMGE---------------  478 (672)
Q Consensus       424 --~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~-----~-~~~~---------------  478 (672)
                        +.+++.+|.++...|++++|+..++++++.  +++.+.+.++.++...+...     + .+..               
T Consensus       493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~  572 (1157)
T PRK11447        493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ  572 (1157)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence              456788999999999999999999999664  57777777776654422100     0 0000               


Q ss_pred             -------CCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 005877          479 -------SGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYM  549 (672)
Q Consensus       479 -------~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~  549 (672)
                             .......++.++|+.+++  ..+.++..++.+|.+|.    ..+++++|+.+|+++++  ++++.++.+||.+
T Consensus       573 ~~~~l~~a~~l~~~G~~~eA~~~l~--~~p~~~~~~~~La~~~~----~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~  646 (1157)
T PRK11447        573 SDQVLETANRLRDSGKEAEAEALLR--QQPPSTRIDLTLADWAQ----QRGDYAAARAAYQRVLTREPGNADARLGLIEV  646 (1157)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHH--hCCCCchHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                   000011234555555555  35677888899999999    88999999999999976  4789999999999


Q ss_pred             HHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          550 HEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       550 y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      |..    .+++++|++.++++++..|+.
T Consensus       647 ~~~----~g~~~eA~~~l~~ll~~~p~~  670 (1157)
T PRK11447        647 DIA----QGDLAAARAQLAKLPATANDS  670 (1157)
T ss_pred             HHH----CCCHHHHHHHHHHHhccCCCC
Confidence            987    789999999999999887764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.95  E-value=3.1e-24  Score=242.08  Aligned_cols=416  Identities=13%  Similarity=0.002  Sum_probs=295.2

Q ss_pred             chHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC-CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHH
Q 005877           87 GSYYITISKMMSAVTNGDVRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSK  163 (672)
Q Consensus        87 a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~  163 (672)
                      .+..+|..++.       .+++++|+..|++++.. .++..+.++|.+|..    .+++++|+..++++++  +++..++
T Consensus       129 ~~k~~G~~~~~-------~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~----l~~~~~Ai~~~~~al~l~p~~~~a~  197 (615)
T TIGR00990       129 KLKEKGNKAYR-------NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNA----LGDWEKVVEDTTAALELDPDYSKAL  197 (615)
T ss_pred             HHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            34556666553       68999999999997654 457888999999998    8999999999999987  5788999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CC
Q 005877          164 MAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GN  241 (672)
Q Consensus       164 ~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~  241 (672)
                      +.+|.+|...|++++|+..|..+....+...         .          ...... ...-...+........+.  .+
T Consensus       198 ~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~---------~----------~~~~~~-~~~l~~~a~~~~~~~l~~~~~~  257 (615)
T TIGR00990       198 NRRANAYDGLGKYADALLDLTASCIIDGFRN---------E----------QSAQAV-ERLLKKFAESKAKEILETKPEN  257 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc---------H----------HHHHHH-HHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999977654321000         0          000000 000001222222222222  23


Q ss_pred             HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----C
Q 005877          242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-----L  314 (672)
Q Consensus       242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~  314 (672)
                      ..+...+|..+...      ....+..-+....+  .....++..+|..+... ...+++++|+.+|+++++.+     .
T Consensus       258 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~y~~A~~~~~~al~~~~~~~~~  330 (615)
T TIGR00990       258 LPSVTFVGNYLQSF------RPKPRPAGLEDSNELDEETGNGQLQLGLKSPES-KADESYEEAARAFEKALDLGKLGEKE  330 (615)
T ss_pred             CCCHHHHHHHHHHc------cCCcchhhhhcccccccccccchHHHHHHHHHh-hhhhhHHHHHHHHHHHHhcCCCChhh
Confidence            33444555544221      11111122222222  12233445555443221 12568889999999988753     4


Q ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHH
Q 005877          315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA  390 (672)
Q Consensus       315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a  390 (672)
                      ..++..+|.++..     .|++++|+.+|+++++.  +++.+++.+|.++..    .+++++|+..|+++++.  .++.+
T Consensus       331 a~a~~~lg~~~~~-----~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~  401 (615)
T TIGR00990       331 AIALNLRGTFKCL-----KGKHLEALADLSKSIELDPRVTQSYIKRASMNLE----LGDPDKAEEDFDKALKLNSEDPDI  401 (615)
T ss_pred             HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHH
Confidence            5678888888875     56899999999998876  367788899998888    88999999999988774  46888


Q ss_pred             HHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877          391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL  466 (672)
Q Consensus       391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l  466 (672)
                      ++.+|.++..    .+++++|+.+|+++++..|  ..++..+|.+++..|++++|+..|+++++.  .++.+++++|.++
T Consensus       402 ~~~lg~~~~~----~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~  477 (615)
T TIGR00990       402 YYHRAQLHFI----KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELL  477 (615)
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            8999988887    8899999999999988875  456778888999999999999999998664  4678888888888


Q ss_pred             HHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--HH------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-
Q 005877          467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--EH------AALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-  537 (672)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~------a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-  537 (672)
                      ..                .+++++|+..|+++++..+  ..      .+++.+..++.   ..+++++|+.+++++++. 
T Consensus       478 ~~----------------~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~---~~~~~~eA~~~~~kAl~l~  538 (615)
T TIGR00990       478 LD----------------QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ---WKQDFIEAENLCEKALIID  538 (615)
T ss_pred             HH----------------ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHhcC
Confidence            77                6788999999998776542  11      22333334441   468999999999999764 


Q ss_pred             -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          538 -SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       538 -~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                       ++..++..||.+|..    .|++++|+++|++|+++.+.
T Consensus       539 p~~~~a~~~la~~~~~----~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       539 PECDIAVATMAQLLLQ----QGDVDEALKLFERAAELART  574 (615)
T ss_pred             CCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHhcc
Confidence             677889999999987    89999999999999998764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.95  E-value=3.9e-24  Score=256.63  Aligned_cols=399  Identities=14%  Similarity=0.082  Sum_probs=325.0

Q ss_pred             hhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHH--------------HHHHH
Q 005877          105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQ--------------SKMAV  166 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~--------------a~~~L  166 (672)
                      .+++++|+..|+++.  +++++++++.||.+|..    .+++++|+.+|+++++  +++..              ....+
T Consensus       282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~----~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~  357 (1157)
T PRK11447        282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQ----QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ  357 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence            588999999999954  46889999999999998    8999999999999987  33321              22456


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH--cCCHHH
Q 005877          167 AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGA  244 (672)
Q Consensus       167 g~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~--~~~~~a  244 (672)
                      |.++...|++++|+..|+++++..|...                .+...++.++..+|++++|++.|+++.+  +++..+
T Consensus       358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~----------------~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a  421 (1157)
T PRK11447        358 GDAALKANNLAQAERLYQQARQVDNTDS----------------YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA  421 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            8888899999999999999998754321                2345689999999999999999999865  468889


Q ss_pred             HHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-
Q 005877          245 MYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-  312 (672)
Q Consensus       245 ~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-  312 (672)
                      +..++.+|..+      ++++|+.++++....           -....+..+|.++..    .+++++|+.+|+++++. 
T Consensus       422 ~~~L~~l~~~~------~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~----~g~~~eA~~~~~~Al~~~  491 (1157)
T PRK11447        422 VRGLANLYRQQ------SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN----QGKWAQAAELQRQRLALD  491 (1157)
T ss_pred             HHHHHHHHHhc------CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence            99999998654      789999888764321           113456678899988    89999999999999875 


Q ss_pred             -CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC--
Q 005877          313 -QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH--  387 (672)
Q Consensus       313 -~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--  387 (672)
                       +++.+++.+|.+|..     .|++++|+..|+++++.  +++.+++.+|..+..    .++.++|+.+++++.....  
T Consensus       492 P~~~~~~~~LA~~~~~-----~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~  562 (1157)
T PRK11447        492 PGSVWLTYRLAQDLRQ-----AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNS  562 (1157)
T ss_pred             CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcCh
Confidence             578899999999986     67999999999999875  588999999988877    8899999999987533211  


Q ss_pred             ----------HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCC
Q 005877          388 ----------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAE--LGY  455 (672)
Q Consensus       388 ----------~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~g~  455 (672)
                                ......++..+..    .++.++|+.+++.  ...++.....+|..+...|++++|+..|+++++  +++
T Consensus       563 ~~~~l~~~l~~~~~l~~a~~l~~----~G~~~eA~~~l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~  636 (1157)
T PRK11447        563 NIQELAQRLQSDQVLETANRLRD----SGKEAEAEALLRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN  636 (1157)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHH----CCCHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence                      1223456666766    8899999999882  233566788999999999999999999999975  468


Q ss_pred             HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005877          456 EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMH  533 (672)
Q Consensus       456 ~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~  533 (672)
                      +.++.+++.+|..                .+++++|+..++++.+.  +++.++..+|.++.    ..+++++|+++|++
T Consensus       637 ~~a~~~la~~~~~----------------~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~----~~g~~~eA~~~~~~  696 (1157)
T PRK11447        637 ADARLGLIEVDIA----------------QGDLAAARAQLAKLPATANDSLNTQRRVALAWA----ALGDTAAAQRTFNR  696 (1157)
T ss_pred             HHHHHHHHHHHHH----------------CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence            9999999999988                77899999999987654  67888999999999    88999999999999


Q ss_pred             HHhcC--------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877          534 ARSQS--------NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE  572 (672)
Q Consensus       534 A~~~~--------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  572 (672)
                      +++..        ++..+..+|.++..    .|+.++|+.+|++|+.
T Consensus       697 al~~~~~~~~~~~~a~~~~~~a~~~~~----~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        697 LIPQAKSQPPSMESALVLRDAARFEAQ----TGQPQQALETYKDAMV  739 (1157)
T ss_pred             HhhhCccCCcchhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence            98742        22456677999887    8999999999999986

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.94  E-value=9.2e-23  Score=219.40  Aligned_cols=476  Identities=16%  Similarity=0.132  Sum_probs=364.9

Q ss_pred             ccccCCCCCCcccccCC--CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCC
Q 005877           63 TEENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGM  138 (672)
Q Consensus        63 ~~~~~~~~~a~~~~~~~--~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~  138 (672)
                      ....++.+.|+..|+++  ++|.+.+++..+|...+..    .+...+..++..+.++  .++.||.+...|+..|..  
T Consensus       209 f~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~----~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf--  282 (1018)
T KOG2002|consen  209 FWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF----NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF--  282 (1018)
T ss_pred             HHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh--
Confidence            34445566677667666  5566777777777766643    4567889999999995  456889999999999988  


Q ss_pred             cccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCch
Q 005877          139 MRERNKGKAFLYHHFAAEGG-----NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAE  213 (672)
Q Consensus       139 g~~~d~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  213 (672)
                        .+|+..+..+..-++...     ..++++.+|..|..+||+++|..||.+++..++..+..               +.
T Consensus       283 --K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l---------------~~  345 (1018)
T KOG2002|consen  283 --KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL---------------PL  345 (1018)
T ss_pred             --cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc---------------cc
Confidence              899999999998887642     34778999999999999999999999988765443211               23


Q ss_pred             hhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877          214 ENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIY  289 (672)
Q Consensus       214 ~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y  289 (672)
                      ..+|.++...|+.+.++.+|++....  ++.+.+..||.+|.... ..+...++|..+..++.+.  .+..++..++.+|
T Consensus       346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~-~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~  424 (1018)
T KOG2002|consen  346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA-KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL  424 (1018)
T ss_pred             cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            45788999999999999999997554  79999999999997652 2233568899999998875  5889999999999


Q ss_pred             HcCCCCcCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CCH------
Q 005877          290 ARGAGVERNYTKALEWLTHAARQ-------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEA------  352 (672)
Q Consensus       290 ~~g~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~~------  352 (672)
                      .     .+|...++..|.+|++.       -.++.++++|..++.     .|++.+|...|.+|...    .+.      
T Consensus       425 e-----~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~-----~g~~~~A~~~f~~A~~~~~~~~n~de~~~~  494 (1018)
T KOG2002|consen  425 E-----QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR-----LGNIEKALEHFKSALGKLLEVANKDEGKST  494 (1018)
T ss_pred             H-----hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH-----hcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence            8     47777788888888742       267889999999986     57999999999998654    222      


Q ss_pred             --HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhH
Q 005877          353 --GGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSS  426 (672)
Q Consensus       353 --~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a  426 (672)
                        ...||||.++..    ..+++.|.+.|+..++  ++..+++.+||.+-..    +.+..+|..+++.+++.+  ++++
T Consensus       495 ~lt~~YNlarl~E~----l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~----k~~~~ea~~~lk~~l~~d~~np~a  566 (1018)
T KOG2002|consen  495 NLTLKYNLARLLEE----LHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD----KNNLYEASLLLKDALNIDSSNPNA  566 (1018)
T ss_pred             hhHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh----ccCcHHHHHHHHHHHhcccCCcHH
Confidence              247999999998    8999999999999887  5678899999866665    789999999999998876  6888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAEL----GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG  502 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~----g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  502 (672)
                      ...+|..+..+.++..|-.-|+..++.    .+.-+...||.++.....    -.........+.+++|+++|.+++..+
T Consensus       567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~----~~~rn~ek~kk~~~KAlq~y~kvL~~d  642 (1018)
T KOG2002|consen  567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH----NPSRNPEKEKKHQEKALQLYGKVLRND  642 (1018)
T ss_pred             HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc----ccccChHHHHHHHHHHHHHHHHHHhcC
Confidence            889999888888888888877776544    345556666665544111    011111233567899999999887776


Q ss_pred             C--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc-CCCC
Q 005877          503 N--EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV-DPAA  577 (672)
Q Consensus       503 ~--~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~  577 (672)
                      +  .-|-+-+|.++.    ..+++..|+..|.+..+.  ..+..+.|||.+|..    .|++..|++.|+.++.. .+..
T Consensus       643 pkN~yAANGIgiVLA----~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e----~~qy~~AIqmYe~~lkkf~~~~  714 (1018)
T KOG2002|consen  643 PKNMYAANGIGIVLA----EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE----QGQYRLAIQMYENCLKKFYKKN  714 (1018)
T ss_pred             cchhhhccchhhhhh----hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH----HHHHHHHHHHHHHHHHHhcccC
Confidence            5  445568888888    788999999999887664  467888899998876    78899999999998876 4444


Q ss_pred             cchhHHHHHHHHHHH
Q 005877          578 KLPVTLALTSLWIRK  592 (672)
Q Consensus       578 ~~~~~~~~~~~~~~~  592 (672)
                      ...+..-|++.|.+.
T Consensus       715 ~~~vl~~Lara~y~~  729 (1018)
T KOG2002|consen  715 RSEVLHYLARAWYEA  729 (1018)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            455555566666654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.93  E-value=1.5e-22  Score=232.80  Aligned_cols=454  Identities=13%  Similarity=0.036  Sum_probs=290.7

Q ss_pred             cCCCCccccccCCCCCCcccccCC--CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCChHHHHHHH
Q 005877           56 FGDSESMTEENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPHARSVLG  131 (672)
Q Consensus        56 ~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg  131 (672)
                      ++..+......+++.+|+..|+++  ++|+++.+.+.++..++.       .|++++|+.++++++.  ++|...+..|+
T Consensus        47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~-------~g~~~~A~~~~~kAv~ldP~n~~~~~~La  119 (987)
T PRK09782         47 RLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRH-------FGHDDRARLLLEDQLKRHPGDARLERSLA  119 (987)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            344455566668888888888888  567777778777777774       5788888888888554  46666666665


Q ss_pred             HHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHH--------HhccCCHHHHHHHHHHHHHHHHhhhhccCCCC
Q 005877          132 FLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYT--------YLRQDMHDKAVKLYAELAEIAVNSFLISKDSP  201 (672)
Q Consensus       132 ~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~--------y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~  201 (672)
                      .+        +++++|+..|++.+.  +++.++++.++..        |.+.+...++++  .+....          .|
T Consensus       120 ~i--------~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~----------~~  179 (987)
T PRK09782        120 AI--------PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAA----------SP  179 (987)
T ss_pred             Hh--------ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCC----------CC
Confidence            55        477888888888776  6888888888887        666655555555  222110          00


Q ss_pred             cccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc-CC--------C------------
Q 005877          202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFG-LR--------G------------  258 (672)
Q Consensus       202 ~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~-~~--------~------------  258 (672)
                      ....+      ...+..+|..++++++|++.++++.+.+  +......|+.+|... +.        .            
T Consensus       180 ~~~vL------~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~al  253 (987)
T PRK09782        180 EGKTL------RTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITY  253 (987)
T ss_pred             CcHHH------HHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHH
Confidence            11111      1124666777777777777777776653  566666666666652 10        0            


Q ss_pred             -----cccCHHHHHHHHHHH--HH--------------------------------------------------------
Q 005877          259 -----LRRDRTKALMWFSKA--AD--------------------------------------------------------  275 (672)
Q Consensus       259 -----~~~~~~~A~~~~~~a--~~--------------------------------------------------------  275 (672)
                           -.++.++|.+++++-  +.                                                        
T Consensus       254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (987)
T PRK09782        254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ  333 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence                 012444444444430  00                                                        


Q ss_pred             ---------------------------------------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH-cC--
Q 005877          276 ---------------------------------------KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR-QQ--  313 (672)
Q Consensus       276 ---------------------------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~--  313 (672)
                                                             ++++.+...++.....    .|+.++|..+|+++.. .+  
T Consensus       334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~----~~~~~~a~~~~~~~~~~~~~~  409 (987)
T PRK09782        334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQ----NGQSREAADLLLQRYPFQGDA  409 (987)
T ss_pred             HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHhcCCCccc
Confidence                                                   0011111111111111    4566666666666654 11  


Q ss_pred             --CHHHHHHHHHHHHcCCCC----------------------------------------------------------Cc
Q 005877          314 --LYSAYNGIGYLYVKGYGV----------------------------------------------------------EK  333 (672)
Q Consensus       314 --~~~a~~~Lg~~y~~g~g~----------------------------------------------------------~~  333 (672)
                        .......|+.+|......                                                          ..
T Consensus       410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~  489 (987)
T PRK09782        410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD  489 (987)
T ss_pred             ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence              111222444444321000                                                          00


Q ss_pred             CCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCccCCHHHH
Q 005877          334 KNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQKAFYQLAKMFHTGVGLKKNLHMA  411 (672)
Q Consensus       334 ~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~L~~~y~~g~g~~~~~~~A  411 (672)
                      +++.+|+..|.+++... +......+|..+..    .+++++|+..|+++... .....++.+|.++..    .++.++|
T Consensus       490 ~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~----~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~----~Gd~~eA  561 (987)
T PRK09782        490 TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQ----VEDYATALAAWQKISLHDMSNEDLLAAANTAQA----AGNGAAR  561 (987)
T ss_pred             CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHH----CCCHHHH
Confidence            23444555455444332 11122223333344    56777777777776543 234456677777766    7788888


Q ss_pred             HHHHHHHHHcCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhH
Q 005877          412 TALYKLVAERGPWS--SLSRWALESYLKGDVGKAFLLYSRMAELG-YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH  488 (672)
Q Consensus       412 ~~~~~~a~~~~~~~--a~~~lg~~~~~~g~~~~A~~~~~~a~~~g-~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~  488 (672)
                      +.+|+++++..+..  ....++......|++++|+..|+++++.. +..++.++|.++.+                .+++
T Consensus       562 ~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~----------------lG~~  625 (987)
T PRK09782        562 DRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQ----------------RHNV  625 (987)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------CCCH
Confidence            88888888776432  33344555556699999999999997653 47788899999888                7789


Q ss_pred             HHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHH
Q 005877          489 QCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAK  564 (672)
Q Consensus       489 ~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~  564 (672)
                      ++|+..+++++  .++++.+++++|.++.    ..+++++|+.+|++|++  ++++.++++||.++..    .|++++|+
T Consensus       626 deA~~~l~~AL~l~Pd~~~a~~nLG~aL~----~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~----lGd~~eA~  697 (987)
T PRK09782        626 PAAVSDLRAALELEPNNSNYQAALGYALW----DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR----LDDMAATQ  697 (987)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH
Confidence            99999999865  4567899999999999    78999999999999977  5799999999999987    89999999


Q ss_pred             HHHHHHHhcCCCCc
Q 005877          565 RYYDQALEVDPAAK  578 (672)
Q Consensus       565 ~~~~~A~~~~~~~~  578 (672)
                      .+|++|++++|+..
T Consensus       698 ~~l~~Al~l~P~~a  711 (987)
T PRK09782        698 HYARLVIDDIDNQA  711 (987)
T ss_pred             HHHHHHHhcCCCCc
Confidence            99999999998763

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.3e-22  Score=218.15  Aligned_cols=437  Identities=16%  Similarity=0.137  Sum_probs=359.7

Q ss_pred             CCCCCcccccCC--CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC-----CChHHHHHHHHHhhcCCcc
Q 005877           68 DPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME-----GDPHARSVLGFLYGMGMMR  140 (672)
Q Consensus        68 ~~~~a~~~~~~~--~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~G~g~  140 (672)
                      .+..+...+..+  .++.+|.++..++..++.       .+|++.+..+..-+...     --++..|.+|..|..    
T Consensus       251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf-------K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha----  319 (1018)
T KOG2002|consen  251 SYKKGVQLLQRAYKENNENPVALNHLANHFYF-------KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA----  319 (1018)
T ss_pred             HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh-------cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh----
Confidence            344444444444  668889999999988775       69999999999986554     236789999999999    


Q ss_pred             cCCHHHHHHHHHHHHhC--CC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhh
Q 005877          141 ERNKGKAFLYHHFAAEG--GN-IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG  217 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~~--~~-~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  217 (672)
                      .||+++|..||.++...  ++ .-+++.||.+|+..|+++.|+.+|+++.+..|+.+                .+..-+|
T Consensus       320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~----------------etm~iLG  383 (1018)
T KOG2002|consen  320 QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY----------------ETMKILG  383 (1018)
T ss_pred             hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchH----------------HHHHHHH
Confidence            99999999999999873  44 78999999999999999999999999999876644                2233467


Q ss_pred             HhhhccC----ChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH-------cCCHHHHHH
Q 005877          218 ALRKSRG----EDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD-------KGEPQSMEF  284 (672)
Q Consensus       218 ~~~~~~g----~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~  284 (672)
                      .+|...+    .-++|...+.+....  .+.++++.|+.+|..+      |+..++..|.+|++       .--++..++
T Consensus       384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~------d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN  457 (1018)
T KOG2002|consen  384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT------DPWASLDAYGNALDILESKGKQIPPEVLNN  457 (1018)
T ss_pred             hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence            7776654    567899999988766  5999999999999887      88888999999985       235789999


Q ss_pred             HHHHHHcCCCCcCCHHHHHHHHHHHHHc----C--------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--C
Q 005877          285 LGEIYARGAGVERNYTKALEWLTHAARQ----Q--------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--E  350 (672)
Q Consensus       285 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~--------~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~  350 (672)
                      +|..+..    .|++++|...|..|...    .        +....++|+.+...     .++++.|.+.|+..++.  +
T Consensus       458 vaslhf~----~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~-----l~~~~~A~e~Yk~Ilkehp~  528 (1018)
T KOG2002|consen  458 VASLHFR----LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE-----LHDTEVAEEMYKSILKEHPG  528 (1018)
T ss_pred             HHHHHHH----hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHCch
Confidence            9999998    99999999999999754    1        22348999999985     56999999999999875  6


Q ss_pred             CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----Ch
Q 005877          351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----PW  424 (672)
Q Consensus       351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~  424 (672)
                      ..+++..||.+-..    ..+..+|..+++.+++.  .+++++..+|.+|..    ..+...|..-|+.....-    ++
T Consensus       529 YId~ylRl~~ma~~----k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~----k~~~~~a~k~f~~i~~~~~~~~D~  600 (1018)
T KOG2002|consen  529 YIDAYLRLGCMARD----KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK----KSEWKPAKKKFETILKKTSTKTDA  600 (1018)
T ss_pred             hHHHHHHhhHHHHh----ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh----hhhhcccccHHHHHHhhhccCCch
Confidence            89999999988777    88999999999999885  489999999999987    777888888777665543    34


Q ss_pred             hHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHH
Q 005877          425 SSLSRWALESYL------------KGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQC  490 (672)
Q Consensus       425 ~a~~~lg~~~~~------------~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~  490 (672)
                      -++..||+.+..            .+.+++|+..|.+++..+  |..|-+-+|.++..                .+++.+
T Consensus       601 YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~----------------kg~~~~  664 (1018)
T KOG2002|consen  601 YSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE----------------KGRFSE  664 (1018)
T ss_pred             hHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh----------------ccCchH
Confidence            456677876553            235678888888887765  66677778888877                788999


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHcCCCCCCCHHHHH
Q 005877          491 AHSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----SNAQAMFNLGYMHEHGQGLPLDLHLAK  564 (672)
Q Consensus       491 A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~  564 (672)
                      |+..|.+..+.  ..+++|+|||.||.    ..+.|..|++.|+..++.    +++..+..||..|..    .+.+.+|+
T Consensus       665 A~dIFsqVrEa~~~~~dv~lNlah~~~----e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~----~~~~~eak  736 (1018)
T KOG2002|consen  665 ARDIFSQVREATSDFEDVWLNLAHCYV----EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE----AGKLQEAK  736 (1018)
T ss_pred             HHHHHHHHHHHHhhCCceeeeHHHHHH----HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH----hhhHHHHH
Confidence            99999976554  56899999999999    899999999999999874    689999999999887    67799999


Q ss_pred             HHHHHHHhcCCCCc
Q 005877          565 RYYDQALEVDPAAK  578 (672)
Q Consensus       565 ~~~~~A~~~~~~~~  578 (672)
                      ++..+|+.+.|...
T Consensus       737 ~~ll~a~~~~p~~~  750 (1018)
T KOG2002|consen  737 EALLKARHLAPSNT  750 (1018)
T ss_pred             HHHHHHHHhCCccc
Confidence            99999999988764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.92  E-value=4.4e-21  Score=216.50  Aligned_cols=387  Identities=14%  Similarity=0.043  Sum_probs=285.0

Q ss_pred             hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 005877          124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV  202 (672)
Q Consensus       124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~  202 (672)
                      +..+..+|..|..    .+++++|+.+|++++.. .++..+.++|.+|...|++++|+..++++++..|..         
T Consensus       127 a~~~k~~G~~~~~----~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~---------  193 (615)
T TIGR00990       127 AAKLKEKGNKAYR----NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDY---------  193 (615)
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC---------
Confidence            4467788999998    99999999999999983 357889999999999999999999999999865432         


Q ss_pred             ccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CC
Q 005877          203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE  278 (672)
Q Consensus       203 ~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~  278 (672)
                             ..+...++.++..+|++++|+..|..+...+  +......+...++         ...+......+++.  .+
T Consensus       194 -------~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~a~~~~~~~l~~~~~~  257 (615)
T TIGR00990       194 -------SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL---------KKFAESKAKEILETKPEN  257 (615)
T ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH---------HHHHHHHHHHHHhcCCCC
Confidence                   1344568888899999999998887665442  1111111111111         12233333444332  23


Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-----C
Q 005877          279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----E  351 (672)
Q Consensus       279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-----~  351 (672)
                      ..+...+|..+...     ....+..-+....+.  ....++..+|..+...  ...+++++|+.+|+++++.+     .
T Consensus       258 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~--~~~~~y~~A~~~~~~al~~~~~~~~~  330 (615)
T TIGR00990       258 LPSVTFVGNYLQSF-----RPKPRPAGLEDSNELDEETGNGQLQLGLKSPES--KADESYEEAARAFEKALDLGKLGEKE  330 (615)
T ss_pred             CCCHHHHHHHHHHc-----cCCcchhhhhcccccccccccchHHHHHHHHHh--hhhhhHHHHHHHHHHHHhcCCCChhh
Confidence            33444555554321     111111222222221  1223445555544321  02358999999999999763     5


Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHH
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSL  427 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~  427 (672)
                      +.+++.+|.++..    .+++++|+.+|+++++.  ....++..+|.++..    .+++++|+.+|+++++..  ++.++
T Consensus       331 a~a~~~lg~~~~~----~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~  402 (615)
T TIGR00990       331 AIALNLRGTFKCL----KGKHLEALADLSKSIELDPRVTQSYIKRASMNLE----LGDPDKAEEDFDKALKLNSEDPDIY  402 (615)
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            6789999999999    99999999999999875  467899999999987    899999999999999987  46789


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCC
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGN  503 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~  503 (672)
                      +.+|.+++..|++++|+..|+++++.  ++..++.++|.++.+                .+++++|+..++++++  +.+
T Consensus       403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----------------~g~~~eA~~~~~~al~~~P~~  466 (615)
T TIGR00990       403 YHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----------------EGSIASSMATFRRCKKNFPEA  466 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999766  478889999999988                7789999999998765  466


Q ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--CHH------HHHHHHHH-HHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877          504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS--NAQ------AMFNLGYM-HEHGQGLPLDLHLAKRYYDQALEVD  574 (672)
Q Consensus       504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~------a~~~Lg~~-y~~g~g~~~d~~~A~~~~~~A~~~~  574 (672)
                      +.+++.+|.++.    ..+++++|+..|++|++..  +..      .+.+.+.. +..    .+++++|.+++++|++++
T Consensus       467 ~~~~~~lg~~~~----~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~----~~~~~eA~~~~~kAl~l~  538 (615)
T TIGR00990       467 PDVYNYYGELLL----DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW----KQDFIEAENLCEKALIID  538 (615)
T ss_pred             hHHHHHHHHHHH----HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcC
Confidence            899999999999    8899999999999998752  211      22233333 332    589999999999999999


Q ss_pred             CCCc
Q 005877          575 PAAK  578 (672)
Q Consensus       575 ~~~~  578 (672)
                      |+..
T Consensus       539 p~~~  542 (615)
T TIGR00990       539 PECD  542 (615)
T ss_pred             CCcH
Confidence            8764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.90  E-value=1e-19  Score=209.35  Aligned_cols=382  Identities=11%  Similarity=0.020  Sum_probs=281.4

Q ss_pred             hhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877          105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV  180 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~  180 (672)
                      .|+.++|+..+++..  ++..+.++..+|.++..    .+++++|+.+|++++.  ++++.+...++.++...+++++|+
T Consensus        28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~  103 (765)
T PRK10049         28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRN----LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL  103 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            577788888888854  44556668888888887    7888888888888765  577888888888888888888888


Q ss_pred             HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 005877          181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR  260 (672)
Q Consensus       181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~  260 (672)
                      ..++++++.                                                .++++. ++.+|.++...     
T Consensus       104 ~~l~~~l~~------------------------------------------------~P~~~~-~~~la~~l~~~-----  129 (765)
T PRK10049        104 VKAKQLVSG------------------------------------------------APDKAN-LLALAYVYKRA-----  129 (765)
T ss_pred             HHHHHHHHh------------------------------------------------CCCCHH-HHHHHHHHHHC-----
Confidence            888877663                                                334566 67777777666     


Q ss_pred             cCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCC
Q 005877          261 RDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL------YSAYNGIGYLYVKGYGVE  332 (672)
Q Consensus       261 ~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~  332 (672)
                      +++++|+..|+++++  ++++.++..+|.++..    .+..++|+..++++.+..+      ......+..++.......
T Consensus       130 g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~----~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~  205 (765)
T PRK10049        130 GRHWDELRAMTQALPRAPQTQQYPTEYVQALRN----NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSE  205 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccCh
Confidence            377777777777766  3567777777777776    6677777777766554110      011112222222100011


Q ss_pred             cCCH---HHHHHHHHHHHhC--CCHH-------HHHH-HHHHHHcCCCchhcHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 005877          333 KKNY---TKAKEYFEKAADN--EEAG-------GHYN-LGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAK  396 (672)
Q Consensus       333 ~~~~---~~A~~~~~~a~~~--~~~~-------a~~~-Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L~~  396 (672)
                      .+.+   ++|+..++++++.  .+|.       +... +|.++ .    .+++++|+..|+++++.+   +..+...+|.
T Consensus       206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll-~----~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~  280 (765)
T PRK10049        206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL-A----RDRYKDVISEYQRLKAEGQIIPPWAQRWVAS  280 (765)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH-H----hhhHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence            2234   7788888888754  2222       2222 55554 4    578999999999988765   4456677888


Q ss_pred             HHHcCCCccCCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------
Q 005877          397 MFHTGVGLKKNLHMATALYKLVAERGPW------SSLSRWALESYLKGDVGKAFLLYSRMAELG----------------  454 (672)
Q Consensus       397 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g----------------  454 (672)
                      +|..    .+++++|+.+|+++++..+.      .....++..+...|++++|+.+++++.+..                
T Consensus       281 ~yl~----~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~  356 (765)
T PRK10049        281 AYLK----LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND  356 (765)
T ss_pred             HHHh----cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence            8887    89999999999998876642      346667778889999999999999987653                


Q ss_pred             -CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005877          455 -YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAY  531 (672)
Q Consensus       455 -~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~  531 (672)
                       ...++..++.++..                .+++++|+..+++++  .++++.+++.+|.++.    ..+++++|++.+
T Consensus       357 ~~~~a~~~~a~~l~~----------------~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~----~~g~~~~A~~~l  416 (765)
T PRK10049        357 DWLQGQSLLSQVAKY----------------SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ----ARGWPRAAENEL  416 (765)
T ss_pred             hHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----hcCCHHHHHHHH
Confidence             13466778888877                778999999999754  5678999999999999    899999999999


Q ss_pred             HHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchh
Q 005877          532 MHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPV  581 (672)
Q Consensus       532 ~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  581 (672)
                      +++++  ++++...+.+|.++..    .+++++|...++++++..|+.....
T Consensus       417 ~~al~l~Pd~~~l~~~~a~~al~----~~~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        417 KKAEVLEPRNINLEVEQAWTALD----LQEWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             HHHHhhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            99977  4789999999999887    8899999999999999999976544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.89  E-value=1e-19  Score=205.00  Aligned_cols=307  Identities=8%  Similarity=-0.073  Sum_probs=252.1

Q ss_pred             hhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877          105 VRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV  180 (672)
Q Consensus       105 ~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~  180 (672)
                      .|++++|...++.  +..+.++++++.||.+...    .+++++|+..|++++.  ++++.++..+|.++...|++++|+
T Consensus        55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~----~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai  130 (656)
T PRK15174         55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA----SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA  130 (656)
T ss_pred             cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhh----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence            5888999999988  5567889999999988887    8899999999999876  788999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCC
Q 005877          181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRG  258 (672)
Q Consensus       181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~--~~~~~a~~~Lg~~y~~~~~~  258 (672)
                      ..|+++++..|...                .....++.++...|++++|+..+++...  ++++.++..++. ++..   
T Consensus       131 ~~l~~Al~l~P~~~----------------~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~---  190 (656)
T PRK15174        131 DLAEQAWLAFSGNS----------------QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNK---  190 (656)
T ss_pred             HHHHHHHHhCCCcH----------------HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHc---
Confidence            99999988654321                2344578888899999999999987644  367777766654 4444   


Q ss_pred             cccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCc
Q 005877          259 LRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEK  333 (672)
Q Consensus       259 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~  333 (672)
                        +++++|+..++++++..   .......++.++..    .+++++|+..|+++++.  +++.++..+|.+|..     .
T Consensus       191 --g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~----~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-----~  259 (656)
T PRK15174        191 --SRLPEDHDLARALLPFFALERQESAGLAVDTLCA----VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-----S  259 (656)
T ss_pred             --CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----c
Confidence              49999999999987753   33444566788887    89999999999999875  478889999999985     4


Q ss_pred             CCHHH----HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCcc
Q 005877          334 KNYTK----AKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK  405 (672)
Q Consensus       334 ~~~~~----A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~  405 (672)
                      |++++    |+.+|+++++.  +++.++..+|.++..    .+++++|+.+++++++.  .++.+..++|.++..    .
T Consensus       260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~----~  331 (656)
T PRK15174        260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ----V  331 (656)
T ss_pred             CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----C
Confidence            56664    89999999876  578899999999999    89999999999999874  577889999999987    8


Q ss_pred             CCHHHHHHHHHHHHHcCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          406 KNLHMATALYKLVAERGPWS--SLSRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       406 ~~~~~A~~~~~~a~~~~~~~--a~~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      +++++|+..|+++++..|..  ....+|..+...|++++|+..|+++++..
T Consensus       332 G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        332 GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            99999999999999887544  45556888899999999999999997663

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.89  E-value=2.7e-18  Score=197.77  Aligned_cols=430  Identities=11%  Similarity=-0.003  Sum_probs=258.0

Q ss_pred             chHHHHHHHHHHHhcCCChhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHH
Q 005877           87 GSYYITISKMMSAVTNGDVRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQS  162 (672)
Q Consensus        87 a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a  162 (672)
                      .+|..|.....       .||+++|+..|++  ..+|+++.+++.|+.+|..    .+++++|+.+.+++++  ++|...
T Consensus        46 ~~f~~a~~~~~-------~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~----~g~~~~A~~~~~kAv~ldP~n~~~  114 (987)
T PRK09782         46 PRLDKALKAQK-------NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRH----FGHDDRARLLLEDQLKRHPGDARL  114 (987)
T ss_pred             HHHHHHHHHHh-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCcccHHH
Confidence            35555555552       5999999999999  4677999999999999999    9999999999999997  577888


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHh--------hhccCChHHHHHHHH
Q 005877          163 KMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL--------RKSRGEDDEAFQILE  234 (672)
Q Consensus       163 ~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~g~~~~Ai~~~~  234 (672)
                      +..|+.+    +++++|+.+|+++++..|..-                .+...++..        |.+.++..++++  .
T Consensus       115 ~~~La~i----~~~~kA~~~ye~l~~~~P~n~----------------~~~~~la~~~~~~~~l~y~q~eqAl~AL~--l  172 (987)
T PRK09782        115 ERSLAAI----PVEVKSVTTVEELLAQQKACD----------------AVPTLRCRSEVGQNALRLAQLPVARAQLN--D  172 (987)
T ss_pred             HHHHHHh----ccChhHHHHHHHHHHhCCCCh----------------hHHHHHHHHhhccchhhhhhHHHHHHHHH--H
Confidence            8888777    899999999999999765421                222234444        555566666666  3


Q ss_pred             HHHHc-CCHH-HHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC----------------
Q 005877          235 YQAQK-GNAG-AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAG----------------  294 (672)
Q Consensus       235 ~aa~~-~~~~-a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g----------------  294 (672)
                      +...+ +++. ..+.++.+|...     +|+++|++.+++.++.  .+......||.+|....+                
T Consensus       173 r~~~~~~~~~vL~L~~~rlY~~l-----~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~  247 (987)
T PRK09782        173 ATFAASPEGKTLRTDLLQRAIYL-----KQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDP  247 (987)
T ss_pred             hhhCCCCCcHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCH
Confidence            33333 3454 455559999888     5999999999998774  345555556655554100                


Q ss_pred             -----------CcCCHHHHHHHHHHHHH-----cCCHHHHHHHHH-----------------------------------
Q 005877          295 -----------VERNYTKALEWLTHAAR-----QQLYSAYNGIGY-----------------------------------  323 (672)
Q Consensus       295 -----------~~~~~~~A~~~~~~a~~-----~~~~~a~~~Lg~-----------------------------------  323 (672)
                                 -.++.++|.+++++--.     .++..-++.++.                                   
T Consensus       248 ~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (987)
T PRK09782        248 QSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEG  327 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhcc
Confidence                       04445555544443100     000000111110                                   


Q ss_pred             ----------------------------------------HHHcCCC------------CCcCCHHHHHHHHHHHHhC-C
Q 005877          324 ----------------------------------------LYVKGYG------------VEKKNYTKAKEYFEKAADN-E  350 (672)
Q Consensus       324 ----------------------------------------~y~~g~g------------~~~~~~~~A~~~~~~a~~~-~  350 (672)
                                                              +|....+            +..|+.++|..+|+++.+. +
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~  407 (987)
T PRK09782        328 QYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG  407 (987)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc
Confidence                                                    1111000            1235777777777777652 1


Q ss_pred             C----HHHHHHHHHHHHcCCC-----------c----------hhcH---HHHHHHHHHHHH--cC--CHHHHHHHHHHH
Q 005877          351 E----AGGHYNLGVMYYKGIG-----------V----------KRDV---KLACKYFLVAAN--AG--HQKAFYQLAKMF  398 (672)
Q Consensus       351 ~----~~a~~~Lg~~y~~g~g-----------~----------~~~~---~~A~~~~~~A~~--~~--~~~a~~~L~~~y  398 (672)
                      +    ......|+.+|.....           .          .++.   ..+...+.+++.  ++  ++.+++++|.++
T Consensus       408 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l  487 (987)
T PRK09782        408 DARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCY  487 (987)
T ss_pred             ccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHH
Confidence            1    1122245544443211           0          0111   111222222221  12  445555555555


Q ss_pred             HcCC----------------------------CccCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877          399 HTGV----------------------------GLKKNLHMATALYKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSR  449 (672)
Q Consensus       399 ~~g~----------------------------g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~~~~~g~~~~A~~~~~~  449 (672)
                      ..|.                            ...+++++|+..|+++....+ ....+.+|..+...|++++|..+|++
T Consensus       488 ~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q  567 (987)
T PRK09782        488 RDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ  567 (987)
T ss_pred             HhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4200                            003444444444444433321 12334444444445555555555555


Q ss_pred             HHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCCCHHH
Q 005877          450 MAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-NEHAALLIGDAYYYGRGTQRDYER  526 (672)
Q Consensus       450 a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lG~~y~~g~g~~~d~~~  526 (672)
                      +++.+  +......++..+..                .+++++|+..++++++.. ++.+++++|.++.    ..+++++
T Consensus       568 AL~l~P~~~~l~~~La~~l~~----------------~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~----~lG~~de  627 (987)
T PRK09782        568 AEQRGLGDNALYWWLHAQRYI----------------PGQPELALNDLTRSLNIAPSANAYVARATIYR----QRHNVPA  627 (987)
T ss_pred             HHhcCCccHHHHHHHHHHHHh----------------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH----HCCCHHH
Confidence            44432  11111111111111                378899999999887643 3788889999999    8899999


Q ss_pred             HHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          527 AAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       527 A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      |+.+|+++++  ++++.++++||.++..    .|++++|+..|++|++.+|+..
T Consensus       628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~~AL~l~P~~~  677 (987)
T PRK09782        628 AVSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSREMLERAHKGLPDDP  677 (987)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999876  4789999999998877    7899999999999999998754

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=3.2e-19  Score=200.98  Aligned_cols=306  Identities=8%  Similarity=-0.045  Sum_probs=227.5

Q ss_pred             cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhH
Q 005877          141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA  218 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  218 (672)
                      .++.++|...++..+.  +++++++..||.+....|++++|+..|+++++.                             
T Consensus        55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~-----------------------------  105 (656)
T PRK15174         55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV-----------------------------  105 (656)
T ss_pred             cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh-----------------------------
Confidence            7899999999988765  789999999999999999999999999998763                             


Q ss_pred             hhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc
Q 005877          219 LRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVE  296 (672)
Q Consensus       219 ~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~  296 (672)
                                         +++++.++..+|.++...     +++++|+..|+++++  ++++.++..+|.++..    .
T Consensus       106 -------------------~P~~~~a~~~la~~l~~~-----g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~----~  157 (656)
T PRK15174        106 -------------------NVCQPEDVLLVASVLLKS-----KQYATVADLAEQAWLAFSGNSQIFALHLRTLVL----M  157 (656)
T ss_pred             -------------------CCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----C
Confidence                               455677777778877776     378888888888776  4677777788888777    7


Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCchhc
Q 005877          297 RNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRD  371 (672)
Q Consensus       297 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~  371 (672)
                      +++++|+..+++.+..  +++.++..++. +..     +|++++|+..++++++..   .......++.++..    .++
T Consensus       158 g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~-----~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~----~g~  227 (656)
T PRK15174        158 DKELQAISLARTQAQEVPPRGDMIATCLS-FLN-----KSRLPEDHDLARALLPFFALERQESAGLAVDTLCA----VGK  227 (656)
T ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH-----cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH----CCC
Confidence            8888888877776543  45555555443 332     457888888887776653   23333455666766    778


Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHH----HHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHH
Q 005877          372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM----ATALYKLVAERGP--WSSLSRWALESYLKGDVGKA  443 (672)
Q Consensus       372 ~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~----A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A  443 (672)
                      +++|+..|+++++.  +++.+++++|.++..    .+++++    |+.+|+++++..|  +.++..+|.++...|++++|
T Consensus       228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~----~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA  303 (656)
T PRK15174        228 YQEAIQTGESALARGLDGAALRRSLGLAYYQ----SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKA  303 (656)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            88888888887764  467777788887776    666664    7888888877764  44677788888888888888


Q ss_pred             HHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCC
Q 005877          444 FLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEHAALLIGDAYYYGRG  519 (672)
Q Consensus       444 ~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g  519 (672)
                      +..++++++.  +++.++.++|.++..                .+++++|+..++++...  +++.....+|.++.    
T Consensus       304 ~~~l~~al~l~P~~~~a~~~La~~l~~----------------~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~----  363 (656)
T PRK15174        304 IPLLQQSLATHPDLPYVRAMYARALRQ----------------VGQYTAASDEFVQLAREKGVTSKWNRYAAAALL----  363 (656)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH----
Confidence            8888888554  467777788888776                66788888888876644  34455566788888    


Q ss_pred             CCCCHHHHHHHHHHHHhc
Q 005877          520 TQRDYERAAEAYMHARSQ  537 (672)
Q Consensus       520 ~~~d~~~A~~~~~~A~~~  537 (672)
                      ..+++++|+.+|+++++.
T Consensus       364 ~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        364 QAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HCCCHHHHHHHHHHHHHh
Confidence            788999999999998775

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=1.2e-17  Score=192.22  Aligned_cols=346  Identities=12%  Similarity=0.007  Sum_probs=269.6

Q ss_pred             cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhH
Q 005877          141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA  218 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  218 (672)
                      .++.++|+..|.++..  +....++..+|.++...+++++|+..|+++++                              
T Consensus        28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~------------------------------   77 (765)
T PRK10049         28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS------------------------------   77 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------
Confidence            7788888888888764  45556688888888888888888888887765                              


Q ss_pred             hhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc
Q 005877          219 LRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVE  296 (672)
Q Consensus       219 ~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~  296 (672)
                                        .+++++.+...++.++...     +++++|+..++++++  ++++. +..+|.++..    .
T Consensus        78 ------------------~~P~~~~a~~~la~~l~~~-----g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~----~  129 (765)
T PRK10049         78 ------------------LEPQNDDYQRGLILTLADA-----GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR----A  129 (765)
T ss_pred             ------------------hCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----C
Confidence                              3456888999999999888     499999999999987  46788 9999999999    9


Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHH-cCCC
Q 005877          297 RNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE------AGGHYNLGVMYY-KGIG  367 (672)
Q Consensus       297 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~-~g~g  367 (672)
                      +++++|+..|+++++.  +++.++..++.++..     .+..++|+..++++....+      ......+..++. .+..
T Consensus       130 g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~-----~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~  204 (765)
T PRK10049        130 GRHWDELRAMTQALPRAPQTQQYPTEYVQALRN-----NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS  204 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence            9999999999999975  588888999999875     4588899999987765211      012222222222 1111


Q ss_pred             chhcH---HHHHHHHHHHHHc--CCHH-------HHH-HHHHHHHcCCCccCCHHHHHHHHHHHHHcC---ChhHHHHHH
Q 005877          368 VKRDV---KLACKYFLVAANA--GHQK-------AFY-QLAKMFHTGVGLKKNLHMATALYKLVAERG---PWSSLSRWA  431 (672)
Q Consensus       368 ~~~~~---~~A~~~~~~A~~~--~~~~-------a~~-~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg  431 (672)
                      ..+++   ++|+..|+++++.  .++.       +.. .++.++.     .+++++|+..|+++++.+   |..+...+|
T Consensus       205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~-----~g~~~eA~~~~~~ll~~~~~~P~~a~~~la  279 (765)
T PRK10049        205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA-----RDRYKDVISEYQRLKAEGQIIPPWAQRWVA  279 (765)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence            23344   7899999998853  2221       212 2555554     589999999999999886   344666789


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--
Q 005877          432 LESYLKGDVGKAFLLYSRMAELGY------EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--  503 (672)
Q Consensus       432 ~~~~~~g~~~~A~~~~~~a~~~g~------~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--  503 (672)
                      .++...|++++|+.+|+++++...      ......+++++..                .+++++|+.+++++.+..+  
T Consensus       280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~----------------~g~~~eA~~~l~~~~~~~P~~  343 (765)
T PRK10049        280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE----------------SENYPGALTVTAHTINNSPPF  343 (765)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh----------------cccHHHHHHHHHHHhhcCCce
Confidence            999999999999999999976542      2456667776655                7899999999998766432  


Q ss_pred             ---------------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 005877          504 ---------------EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRY  566 (672)
Q Consensus       504 ---------------~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  566 (672)
                                     ..++..+|.++.    ..+++++|+..+++++.  ++++..+.++|.++..    .+++++|++.
T Consensus       344 ~~~~~~~~~~p~~~~~~a~~~~a~~l~----~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~----~g~~~~A~~~  415 (765)
T PRK10049        344 LRLYGSPTSIPNDDWLQGQSLLSQVAK----YSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA----RGWPRAAENE  415 (765)
T ss_pred             EeecCCCCCCCCchHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Confidence                           356789999999    88999999999999876  5889999999999987    8999999999


Q ss_pred             HHHHHhcCCCCc
Q 005877          567 YDQALEVDPAAK  578 (672)
Q Consensus       567 ~~~A~~~~~~~~  578 (672)
                      +++|++++|+..
T Consensus       416 l~~al~l~Pd~~  427 (765)
T PRK10049        416 LKKAEVLEPRNI  427 (765)
T ss_pred             HHHHHhhCCCCh
Confidence            999999999864

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=99.85  E-value=2.2e-19  Score=183.76  Aligned_cols=204  Identities=33%  Similarity=0.475  Sum_probs=175.3

Q ss_pred             hccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHH
Q 005877          221 KSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYT  300 (672)
Q Consensus       221 ~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~  300 (672)
                      ...+++..++.++++++..+++.+++.++.+|..+ .++++|.++|++||+++++.|++.+++.||.+|..|.||..|..
T Consensus        52 ~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g-~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~  130 (292)
T COG0790          52 AYPPDYAKALKSYEKAAELGDAAALALLGQMYGAG-KGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLV  130 (292)
T ss_pred             cccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhc-cCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHH
Confidence            35668888999999988888889999999999888 68889999999999999999999999999999999988889999


Q ss_pred             HHHHHHHHHHHcCCHHH---HHHHHHHHHcC---CCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHH
Q 005877          301 KALEWLTHAARQQLYSA---YNGIGYLYVKG---YGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKL  374 (672)
Q Consensus       301 ~A~~~~~~a~~~~~~~a---~~~Lg~~y~~g---~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~  374 (672)
                      +|..||++|++.|++.+   ++.||.+|..|   .++.. +...|+.+|.++.+.++++++++||.+|..|.|+..|+.+
T Consensus       131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~-~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~  209 (292)
T COG0790         131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY-DDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKK  209 (292)
T ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH-HHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHH
Confidence            99999999999998888   89999999988   66655 6678999999999999999999999999999889999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCccC----------CHHHHHHHHHHHHHcCChhH
Q 005877          375 ACKYFLVAANAGHQKAFYQLAKMFHTGVGLKK----------NLHMATALYKLVAERGPWSS  426 (672)
Q Consensus       375 A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~----------~~~~A~~~~~~a~~~~~~~a  426 (672)
                      |+.||++|++.++..+.++++.++..|.++.+          +..+|..++.++.+.++..+
T Consensus       210 A~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  271 (292)
T COG0790         210 AFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA  271 (292)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence            99999999998888889999988888877655          77777777777776665443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=99.83  E-value=1.5e-18  Score=177.58  Aligned_cols=205  Identities=33%  Similarity=0.519  Sum_probs=191.4

Q ss_pred             CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCH
Q 005877          257 RGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNY  336 (672)
Q Consensus       257 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~  336 (672)
                      ...+.++..|..+++++...+++.+...++.+|..|.|+..|.++|+.||+.+++.+++.+++.||.+|..|.|+.+ |.
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~-d~  129 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPL-DL  129 (292)
T ss_pred             ccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCccc-CH
Confidence            34667999999999999999999999999999999999999999999999999999999999999999999999877 99


Q ss_pred             HHHHHHHHHHHhCCCHHH---HHHHHHHHHcC---CCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHH
Q 005877          337 TKAKEYFEKAADNEEAGG---HYNLGVMYYKG---IGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHM  410 (672)
Q Consensus       337 ~~A~~~~~~a~~~~~~~a---~~~Lg~~y~~g---~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~  410 (672)
                      .+|..||++|++.|++.+   ++.+|.+|..|   .++..+..+|+.+|.++...+++.++++||.+|..|.|+.+|..+
T Consensus       130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~  209 (292)
T COG0790         130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKK  209 (292)
T ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHH
Confidence            999999999999999999   99999999999   778888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005877          411 ATALYKLVAERGPWSSLSRWALESYLKG---------------DVGKAFLLYSRMAELGYEVAQSNAA  463 (672)
Q Consensus       411 A~~~~~~a~~~~~~~a~~~lg~~~~~~g---------------~~~~A~~~~~~a~~~g~~~a~~nla  463 (672)
                      |..||+++++.++..+.+.++ .++..|               +..+|..++.++...+...+...+-
T Consensus       210 A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  276 (292)
T COG0790         210 AFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR  276 (292)
T ss_pred             HHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence            999999999999988889999 666555               8899999999999999887765443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=6.7e-18  Score=167.28  Aligned_cols=131  Identities=18%  Similarity=0.118  Sum_probs=104.0

Q ss_pred             HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCC
Q 005877          125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS  200 (672)
Q Consensus       125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~  200 (672)
                      ..+++|+.-|..    ..-+.+|+.-|+-.+..    +.-...+++|.+|++..++.+|+++|+.++++.|+.       
T Consensus       202 svl~nlaqqy~~----ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi-------  270 (840)
T KOG2003|consen  202 SVLFNLAQQYEA----NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI-------  270 (840)
T ss_pred             HHHHHHHHHhhh----hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc-------
Confidence            567788888876    66788999999887762    344567899999999999999999999999875432       


Q ss_pred             CcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 005877          201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD  275 (672)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~  275 (672)
                        ...+|+  .+..|+|..+.+.|+|++||..|+...+. .+..+-++|-.+++..     +|-++-.+.|++.+.
T Consensus       271 --nk~~ri--kil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i-----~d~ekmkeaf~kli~  337 (840)
T KOG2003|consen  271 --NKDMRI--KILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAI-----GDAEKMKEAFQKLID  337 (840)
T ss_pred             --chhhHH--HHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheec-----CcHHHHHHHHHHHhc
Confidence              111222  34567888899999999999999998777 4888889999998877     488888888888764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=8.7e-16  Score=154.39  Aligned_cols=368  Identities=16%  Similarity=0.083  Sum_probs=263.0

Q ss_pred             hhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877          105 VRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV  180 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~  180 (672)
                      .++|++|+++|.++++.  +.|..+.+++-+|..    .+|.++-++-..+|++  +.+..+++.-+..+...|++++|+
T Consensus       128 ~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~----lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal  203 (606)
T KOG0547|consen  128 NKKYDEAIKYYTQAIELCPDEPIFYSNRAACYES----LGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL  203 (606)
T ss_pred             cccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHH----HhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHH
Confidence            57899999999998876  448899999999999    9999999999999988  678999999999999999999986


Q ss_pred             HHHH------------------HHHHHHH----hhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHH--
Q 005877          181 KLYA------------------ELAEIAV----NSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ--  236 (672)
Q Consensus       181 ~~y~------------------~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~a--  236 (672)
                      .-..                  ++++...    +........|...+..                     -|..|-..  
T Consensus       204 ~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~---------------------fi~syf~sF~  262 (606)
T KOG0547|consen  204 FDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSAT---------------------FIASYFGSFH  262 (606)
T ss_pred             HhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHH---------------------HHHHHHhhcc
Confidence            5332                  1111100    0000000111111100                     01111100  


Q ss_pred             ----------HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc------CC---------HHHHHHHHHHHHc
Q 005877          237 ----------AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK------GE---------PQSMEFLGEIYAR  291 (672)
Q Consensus       237 ----------a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~------~~---------~~a~~~Lg~~y~~  291 (672)
                                .+.++....-.+-.++    .+.+..|.+|.+.+.+....      -+         +.++..-|..+.-
T Consensus       263 ~~~~~~~~~~~~ksDa~l~~~l~~l~----~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL  338 (606)
T KOG0547|consen  263 ADPKPLFDNKSDKSDAALAEALEALE----KGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL  338 (606)
T ss_pred             ccccccccCCCccchhhHHHHHHHHH----hhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence                      0111222222222222    23445788888888877652      12         4566666666665


Q ss_pred             CCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Q 005877          292 GAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIG  367 (672)
Q Consensus       292 g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g  367 (672)
                          .||+-.|..-|.++++..  +...+..++.+|..     +.+.++-...|.+|.+.+  +++.+++-|++++-   
T Consensus       339 ----~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d-----~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl---  406 (606)
T KOG0547|consen  339 ----KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYAD-----ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL---  406 (606)
T ss_pred             ----cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhh-----hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH---
Confidence                899999999999999875  44558899999986     558899999999998875  99999999999999   


Q ss_pred             chhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHH
Q 005877          368 VKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKA  443 (672)
Q Consensus       368 ~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A  443 (672)
                       .+++++|+.-|+++++..  +..++..++.+...    +..++.+...|+.+.++-|  ++.+...|.++..++++++|
T Consensus       407 -L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A  481 (606)
T KOG0547|consen  407 -LQQYEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA  481 (606)
T ss_pred             -HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence             999999999999998876  45566666666555    7799999999999999986  67788889999999999999


Q ss_pred             HHHHHHHHHcCCH--------HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--HHHHHHHHHH
Q 005877          444 FLLYSRMAELGYE--------VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--EHAALLIGDA  513 (672)
Q Consensus       444 ~~~~~~a~~~g~~--------~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lG~~  513 (672)
                      ++.|.+|++....        ....+-|.+..+               -.+++..|+.++++|++.++  ..|...||.+
T Consensus       482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---------------wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~  546 (606)
T KOG0547|consen  482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---------------WKEDINQAENLLRKAIELDPKCEQAYETLAQF  546 (606)
T ss_pred             HHHHHHHHhhccccccccccchhhhhhhHhhhc---------------hhhhHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence            9999999877533        222233333222               14677788888888777665  5667778877


Q ss_pred             HHhCCCCCCCHHHHHHHHHHHHhc
Q 005877          514 YYYGRGTQRDYERAAEAYMHARSQ  537 (672)
Q Consensus       514 y~~g~g~~~d~~~A~~~~~~A~~~  537 (672)
                      -.    .+++.++|+++|++++..
T Consensus       547 ~l----Q~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  547 EL----QRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             HH----HHhhHHHHHHHHHHHHHH
Confidence            77    777888888888877653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.78  E-value=5.6e-15  Score=167.23  Aligned_cols=427  Identities=12%  Similarity=0.026  Sum_probs=291.6

Q ss_pred             chHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHH
Q 005877           87 GSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKM  164 (672)
Q Consensus        87 a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~  164 (672)
                      ..|..++....       .|+++.|+..|+++.  ++.++.+.+.+..++..    .++.++|+.++++++.+.+..+..
T Consensus        36 ~~y~~aii~~r-------~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~----~G~~~~A~~~~eka~~p~n~~~~~  104 (822)
T PRK14574         36 TQYDSLIIRAR-------AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGW----AGRDQEVIDVYERYQSSMNISSRG  104 (822)
T ss_pred             HHHHHHHHHHh-------CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHH----cCCcHHHHHHHHHhccCCCCCHHH
Confidence            46666666653       577888888888844  44554444467677666    678888888888888765544444


Q ss_pred             H--HHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCH
Q 005877          165 A--VAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNA  242 (672)
Q Consensus       165 ~--Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~  242 (672)
                      .  +|.+|...|++++|++.|+++++..|.+.                .+...++..+...++.++|++.++++.... +
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~----------------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-p  167 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKKDPTNP----------------DLISGMIMTQADAGRGGVVLKQATELAERD-P  167 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHhhcCCHHHHHHHHHHhcccC-c
Confidence            4  47788888888888888888887665431                112235566777788888888888865553 1


Q ss_pred             HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--------
Q 005877          243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--------  312 (672)
Q Consensus       243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------  312 (672)
                      .....++.+|+..  + .++..+|++.|+++++.  ++...+..+-.....    .+-...|.+..++--+.        
T Consensus       168 ~~~~~l~layL~~--~-~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~----~~~~~~a~~l~~~~p~~f~~~~~~~  240 (822)
T PRK14574        168 TVQNYMTLSYLNR--A-TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQR----NRIVEPALRLAKENPNLVSAEHYRQ  240 (822)
T ss_pred             chHHHHHHHHHHH--h-cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHhCccccCHHHHHH
Confidence            1222255555542  1 23565699999998874  677777777777766    56666666655542211        


Q ss_pred             ---CCHHHHHHHHHHHHcCCCCCcCC---HHHHHHHHHHHHhC--CCHHHHH--------HHHHHHHcCCCchhcHHHHH
Q 005877          313 ---QLYSAYNGIGYLYVKGYGVEKKN---YTKAKEYFEKAADN--EEAGGHY--------NLGVMYYKGIGVKRDVKLAC  376 (672)
Q Consensus       313 ---~~~~a~~~Lg~~y~~g~g~~~~~---~~~A~~~~~~a~~~--~~~~a~~--------~Lg~~y~~g~g~~~~~~~A~  376 (672)
                         +.+.-..+.+.+...   .....   .+.|+.-+++....  ..|.++-        .++.+. .    .+++.+++
T Consensus       241 l~~~~~a~~vr~a~~~~~---~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~-~----r~r~~~vi  312 (822)
T PRK14574        241 LERDAAAEQVRMAVLPTR---SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL-V----RHQTADLI  312 (822)
T ss_pred             HHHHHHHHHHhhcccccc---cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH-H----hhhHHHHH
Confidence               001111111211110   00111   23445555554432  2232211        222222 3    57899999


Q ss_pred             HHHHHHHHcC---CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC------hhH--HHHHHHHHHhcCCHHHHHH
Q 005877          377 KYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------WSS--LSRWALESYLKGDVGKAFL  445 (672)
Q Consensus       377 ~~~~~A~~~~---~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a--~~~lg~~~~~~g~~~~A~~  445 (672)
                      +.|+..-..+   ++-+....|..|..    .+..++|+.+|+.++...+      ...  ...|...+...+++++|..
T Consensus       313 ~~y~~l~~~~~~~P~y~~~a~adayl~----~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~  388 (822)
T PRK14574        313 KEYEAMEAEGYKMPDYARRWAASAYID----RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ  388 (822)
T ss_pred             HHHHHhhhcCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence            9999887555   67788999999998    9999999999999977541      122  3567788899999999999


Q ss_pred             HHHHHHHcC-----------------CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH--HhCCCHHH
Q 005877          446 LYSRMAELG-----------------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA--SEQGNEHA  506 (672)
Q Consensus       446 ~~~~a~~~g-----------------~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a  506 (672)
                      ++++..+.-                 +..++..++.++..                .+++.+|.+.+++.  ..|+|+..
T Consensus       389 ~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~----------------~gdl~~Ae~~le~l~~~aP~n~~l  452 (822)
T PRK14574        389 FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA----------------LNDLPTAQKKLEDLSSTAPANQNL  452 (822)
T ss_pred             HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCCCCHHH
Confidence            999997621                 33555566666655                67899999999964  55688999


Q ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchhHHH
Q 005877          507 ALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLA  584 (672)
Q Consensus       507 ~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~~~  584 (672)
                      +..+|.++.    ..+.+.+|.++++.+..  +.+..+.+.+|..+..    .+++.+|....++.++..|+..-...+.
T Consensus       453 ~~~~A~v~~----~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~----l~e~~~A~~~~~~l~~~~Pe~~~~~~l~  524 (822)
T PRK14574        453 RIALASIYL----ARDLPRKAEQELKAVESLAPRSLILERAQAETAMA----LQEWHQMELLTDDVISRSPEDIPSQELD  524 (822)
T ss_pred             HHHHHHHHH----hcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh----hhhHHHHHHHHHHHHhhCCCchhHHHHH
Confidence            999999999    89999999999988644  5778899999999887    8999999999999999999987544333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.76  E-value=2.1e-15  Score=161.30  Aligned_cols=288  Identities=16%  Similarity=0.119  Sum_probs=211.0

Q ss_pred             CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----
Q 005877          241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL----  314 (672)
Q Consensus       241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----  314 (672)
                      .....+.+|..+...     +++++|+..|+++++.  +++.++..+|.++..    .+++++|+..++++++.+.    
T Consensus        34 ~~~~~y~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~  104 (389)
T PRK11788         34 RLSRDYFKGLNFLLN-----EQPDKAIDLFIEMLKVDPETVELHLALGNLFRR----RGEVDRAIRIHQNLLSRPDLTRE  104 (389)
T ss_pred             hccHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCcHHHHHHHHHHHhcCCCCCHH
Confidence            445566667777666     4888899999988874  567788888888888    8889999998888877542    


Q ss_pred             --HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC---
Q 005877          315 --YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH---  387 (672)
Q Consensus       315 --~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~---  387 (672)
                        ..++..||.+|..     .|++++|+.+|+++.+.  .+..++..++.++..    .+++++|++.|+++++.+.   
T Consensus       105 ~~~~~~~~La~~~~~-----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~  175 (389)
T PRK11788        105 QRLLALQELGQDYLK-----AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ----EKDWQKAIDVAERLEKLGGDSL  175 (389)
T ss_pred             HHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhcCCcc
Confidence              2467788888875     56899999999988875  356788888888888    8899999999988877542   


Q ss_pred             ----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---HHH
Q 005877          388 ----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGY---EVA  458 (672)
Q Consensus       388 ----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~---~~a  458 (672)
                          ...+..+|.++..    .+++++|+.+|+++++..+  ..++..+|..+...|++++|+.+++++.+.+.   ..+
T Consensus       176 ~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  251 (389)
T PRK11788        176 RVEIAHFYCELAQQALA----RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV  251 (389)
T ss_pred             hHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence                1244567777776    7899999999999887763  45677888889999999999999999886542   244


Q ss_pred             HHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877          459 QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ  537 (672)
Q Consensus       459 ~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~  537 (672)
                      ...++.+|..                .+++++|+..++++.+.. +......+|.++.    ..+++++|+.+++++++.
T Consensus       252 ~~~l~~~~~~----------------~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~----~~g~~~~A~~~l~~~l~~  311 (389)
T PRK11788        252 LPKLMECYQA----------------LGDEAEGLEFLRRALEEYPGADLLLALAQLLE----EQEGPEAAQALLREQLRR  311 (389)
T ss_pred             HHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH----HhCCHHHHHHHHHHHHHh
Confidence            5677777766                668888999888765532 2344578999998    889999999999999875


Q ss_pred             C-CHHHHHH-HHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877          538 S-NAQAMFN-LGYMHEHGQGLPLDLHLAKRYYDQALE  572 (672)
Q Consensus       538 ~-~~~a~~~-Lg~~y~~g~g~~~d~~~A~~~~~~A~~  572 (672)
                      . +...+.. ++.....+  -.++..+|+..+++.++
T Consensus       312 ~P~~~~~~~l~~~~~~~~--~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        312 HPSLRGFHRLLDYHLAEA--EEGRAKESLLLLRDLVG  346 (389)
T ss_pred             CcCHHHHHHHHHHhhhcc--CCccchhHHHHHHHHHH
Confidence            2 2223332 33322111  03456666666665543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.76  E-value=1.1e-15  Score=163.41  Aligned_cols=216  Identities=18%  Similarity=0.110  Sum_probs=144.8

Q ss_pred             hhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC-------HHHHHHHH
Q 005877          216 KGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-------PQSMEFLG  286 (672)
Q Consensus       216 ~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg  286 (672)
                      ++.++...|++++|+..|+++.+.  .+..++..++.++...     +++++|++.++++++.+.       ...+..+|
T Consensus       113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE-----KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            344444444444444444444332  3556777777777766     478888888887766421       22445677


Q ss_pred             HHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCC---HHHHHHHHHH
Q 005877          287 EIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE---AGGHYNLGVM  361 (672)
Q Consensus       287 ~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~  361 (672)
                      .++..    .+++++|+.+|+++++.  ++..+...+|.+|..     .|++++|+++|+++.+.+.   ..++..++.+
T Consensus       188 ~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~  258 (389)
T PRK11788        188 QQALA----RGDLDAARALLKKALAADPQCVRASILLGDLALA-----QGDYAAAIEALERVEEQDPEYLSEVLPKLMEC  258 (389)
T ss_pred             HHHHh----CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence            77777    78888888888888764  356677788888875     5688888888888876532   3456778888


Q ss_pred             HHcCCCchhcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHH-HHHHHHHh---
Q 005877          362 YYKGIGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS-RWALESYL---  436 (672)
Q Consensus       362 y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~-~lg~~~~~---  436 (672)
                      |..    .+++++|+..++++.+.. +......++.++..    .+++++|+.+++++++..|..... .+......   
T Consensus       259 ~~~----~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~----~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~  330 (389)
T PRK11788        259 YQA----LGDEAEGLEFLRRALEEYPGADLLLALAQLLEE----QEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE  330 (389)
T ss_pred             HHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence            887    788888888888887643 23344777888776    788888888888888876544322 22222222   


Q ss_pred             cCCHHHHHHHHHHHHHc
Q 005877          437 KGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       437 ~g~~~~A~~~~~~a~~~  453 (672)
                      .|+..+++..+++.++.
T Consensus       331 ~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        331 EGRAKESLLLLRDLVGE  347 (389)
T ss_pred             CccchhHHHHHHHHHHH
Confidence            45788888888877654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=4.9e-15  Score=149.06  Aligned_cols=383  Identities=15%  Similarity=0.055  Sum_probs=275.8

Q ss_pred             HHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCccc
Q 005877          127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIE  204 (672)
Q Consensus       127 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~  204 (672)
                      +-..|.-+..    .+.|++|+.||.+|++  ++.+--+.+.+-+|...|++++-++.-.++++..|+..          
T Consensus       118 lK~~GN~~f~----~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~----------  183 (606)
T KOG0547|consen  118 LKTKGNKFFR----NKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYV----------  183 (606)
T ss_pred             HHhhhhhhhh----cccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHH----------
Confidence            3355666665    8899999999999998  45588899999999999999999999999998766422          


Q ss_pred             chhcccCchhhhhHhhhccCChHHHHHHHHHHHHc-C--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHH----------
Q 005877          205 PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-G--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFS----------  271 (672)
Q Consensus       205 ~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~-~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~----------  271 (672)
                            .+....+..+..+|++++|+.-..-.+-. |  +......+-+.+-..      -..++-+-|+          
T Consensus       184 ------KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~------a~~ka~e~~k~nr~p~lPS~  251 (606)
T KOG0547|consen  184 ------KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ------AMKKAKEKLKENRPPVLPSA  251 (606)
T ss_pred             ------HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH------HHHHHHHhhcccCCCCCCcH
Confidence                  12233555666777777776544432211 1  222211111111111      1111111111          


Q ss_pred             -------HHHH------------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC------C---------HHH
Q 005877          272 -------KAAD------------KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ------L---------YSA  317 (672)
Q Consensus       272 -------~a~~------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~---------~~a  317 (672)
                             ....            .++..-...+-.++..   ....|.+|...+.+.....      +         +.+
T Consensus       252 ~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~---~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~a  328 (606)
T KOG0547|consen  252 TFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKG---LEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEA  328 (606)
T ss_pred             HHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhh---CchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHH
Confidence                   1100            0111112222222221   2456888888888776432      1         344


Q ss_pred             HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHH
Q 005877          318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQ  393 (672)
Q Consensus       318 ~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~  393 (672)
                      +..-|..++     ..||...|..-|..++..+  ++..+..+|.+|.+    ..+..+-.+.|.+|.+.  .+++.++.
T Consensus       329 l~~~gtF~f-----L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d----~~~~~~~~~~F~~A~~ldp~n~dvYyH  399 (606)
T KOG0547|consen  329 LLLRGTFHF-----LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYAD----ENQSEKMWKDFNKAEDLDPENPDVYYH  399 (606)
T ss_pred             HHHhhhhhh-----hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhh----hhccHHHHHHHHHHHhcCCCCCchhHh
Confidence            555555555     3679999999999999886  34448899999999    99999999999999875  47899999


Q ss_pred             HHHHHHcCCCccCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh
Q 005877          394 LAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKY  469 (672)
Q Consensus       394 L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~  469 (672)
                      -|.++.-    .+++++|+.-|++++...|..  ++..++...|+.+.++++...|+.+.+.  ..+++.+-.|.+|.. 
T Consensus       400 RgQm~fl----L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD-  474 (606)
T KOG0547|consen  400 RGQMRFL----LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD-  474 (606)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-
Confidence            9999986    899999999999999999755  5788999999999999999999999775  577788888888765 


Q ss_pred             CCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC
Q 005877          470 GEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--------EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN  539 (672)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~  539 (672)
                                     ++++++|++.|.++++..+        +-.+++=|.+...   ..+|+.+|++.+++|++.  ..
T Consensus       475 ---------------qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkc  536 (606)
T KOG0547|consen  475 ---------------QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKC  536 (606)
T ss_pred             ---------------HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchH
Confidence                           8899999999999977654        3445555555553   358999999999999886  45


Q ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877          540 AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD  574 (672)
Q Consensus       540 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  574 (672)
                      -.|.-.||.+-..    .++.++|+++|++++.+-
T Consensus       537 e~A~~tlaq~~lQ----~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  537 EQAYETLAQFELQ----RGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             HHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHH
Confidence            6899999999876    789999999999998764

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=9.9e-15  Score=146.10  Aligned_cols=306  Identities=17%  Similarity=0.153  Sum_probs=227.7

Q ss_pred             hhHhhhccCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 005877          216 KGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGA  293 (672)
Q Consensus       216 ~~~~~~~~g~~~~Ai~~~~~aa~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~  293 (672)
                      .|.++...|..++|+..+...+.  +-+=.|+..|+.+.-        +.+.+-..-.......+...-+.++.+|..  
T Consensus       170 ~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit--------~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e--  239 (559)
T KOG1155|consen  170 YGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT--------DIEILSILVVGLPSDMHWMKKFFLKKAYQE--  239 (559)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc--------hHHHHHHHHhcCcccchHHHHHHHHHHHHH--
Confidence            56777788888888888888777  457788888887752        222222111111112344555667777776  


Q ss_pred             CCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcC
Q 005877          294 GVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGHYNLGVMYYKG  365 (672)
Q Consensus       294 g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g  365 (672)
                        ....++++.-++.-+..|   +.......|.+...     +.|+++|+..|+...+++     +.+.+.|+  +|.. 
T Consensus       240 --l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~-----~rDfD~a~s~Feei~knDPYRl~dmdlySN~--LYv~-  309 (559)
T KOG1155|consen  240 --LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYN-----QRDFDQAESVFEEIRKNDPYRLDDMDLYSNV--LYVK-  309 (559)
T ss_pred             --HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhcCCCcchhHHHHhHH--HHHH-
Confidence              566777777777666665   34445566666664     459999999999988773     33333332  3322 


Q ss_pred             CCchhcHHHHHHHHHH-HH--HcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCH
Q 005877          366 IGVKRDVKLACKYFLV-AA--NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDV  440 (672)
Q Consensus       366 ~g~~~~~~~A~~~~~~-A~--~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~  440 (672)
                          .+ ...+.++-. ..  ..-.++...-+|..|.-    .++.++|+.||++|++.+|  ..++..+|..|.++++.
T Consensus       310 ----~~-~skLs~LA~~v~~idKyR~ETCCiIaNYYSl----r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt  380 (559)
T KOG1155|consen  310 ----ND-KSKLSYLAQNVSNIDKYRPETCCIIANYYSL----RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT  380 (559)
T ss_pred             ----hh-hHHHHHHHHHHHHhccCCccceeeehhHHHH----HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc
Confidence                12 222333322 22  23356777777877776    8999999999999999986  45788899999999999


Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH--HhCCCHHHHHHHHHHHHh
Q 005877          441 GKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA--SEQGNEHAALLIGDAYYY  516 (672)
Q Consensus       441 ~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lG~~y~~  516 (672)
                      ..|+..|+.|++..  +-.|++-||..|.-                .+.+.=|+-+|++|  .+|.|+..+..||.||. 
T Consensus       381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYei----------------m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~-  443 (559)
T KOG1155|consen  381 HAAIESYRRAVDINPRDYRAWYGLGQAYEI----------------MKMHFYALYYFQKALELKPNDSRLWVALGECYE-  443 (559)
T ss_pred             HHHHHHHHHHHhcCchhHHHHhhhhHHHHH----------------hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH-
Confidence            99999999998886  77899999999988                67788899999987  45678889999999999 


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877          517 GRGTQRDYERAAEAYMHARSQSNA--QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD  574 (672)
Q Consensus       517 g~g~~~d~~~A~~~~~~A~~~~~~--~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  574 (672)
                         +..+.++|+++|++|+..++.  .+++.||.+|++    .+|..+|..+|++-++..
T Consensus       444 ---kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~----l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  444 ---KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE----LKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             ---HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHH
Confidence               899999999999999987765  899999999998    899999999999999853

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.75  E-value=1.6e-13  Score=159.62  Aligned_cols=408  Identities=13%  Similarity=0.044  Sum_probs=314.8

Q ss_pred             hhhHHHHHHHHHHHHhCCC----hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHH
Q 005877          105 VRVMEEATSEVESAAMEGD----PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAV  180 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~  180 (672)
                      .|++++|++.|++....+.    .-.+..+-..+..    .+....|..+++.... -+...+..|-..+...++.++|.
T Consensus       383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~----~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~  457 (1060)
T PLN03218        383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK----QRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGAL  457 (1060)
T ss_pred             CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----CCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHH
Confidence            5889999999999766653    1222233344544    6789999998887665 56778888888899999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCC
Q 005877          181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLR  257 (672)
Q Consensus       181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~~~~  257 (672)
                      ..|+++.+.+..        |       +..+...+-..+.+.|+.++|.+.|+++.+.|   |...+..|...|...  
T Consensus       458 ~lf~~M~~~Gl~--------p-------D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~--  520 (1060)
T PLN03218        458 RVLRLVQEAGLK--------A-------DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA--  520 (1060)
T ss_pred             HHHHHHHHcCCC--------C-------CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC--
Confidence            999998764311        0       11122345667889999999999999998875   778888898888887  


Q ss_pred             CcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCC
Q 005877          258 GLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-----QLYSAYNGIGYLYVKGY  329 (672)
Q Consensus       258 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~  329 (672)
                         +++++|++.|++..+.+   +...+..|-..|..    .++.++|.+.|++..+.     .+...++.|-..|..  
T Consensus       521 ---G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k----~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k--  591 (1060)
T PLN03218        521 ---GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ----SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN--  591 (1060)
T ss_pred             ---cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH--
Confidence               49999999999987754   67888888888988    89999999999998752     366677777777875  


Q ss_pred             CCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCC
Q 005877          330 GVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVG  403 (672)
Q Consensus       330 g~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L~~~y~~g~g  403 (672)
                         .|++++|.+.|++..+.+   ++..+..+...|.+    .+++++|.+.|.+..+.|   +...+..+...|..   
T Consensus       592 ---~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k---  661 (1060)
T PLN03218        592 ---AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH---  661 (1060)
T ss_pred             ---CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Confidence               579999999999998876   56788888899988    899999999999998865   45667777777766   


Q ss_pred             ccCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcccC
Q 005877          404 LKKNLHMATALYKLVAERG---PWSSLSRWALESYLKGDVGKAFLLYSRMAELG---YEVAQSNAAWILDKYGEGSMCMG  477 (672)
Q Consensus       404 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g---~~~a~~nla~~l~~~~~~~~~~~  477 (672)
                       .++.++|..++++..+.+   +...+..+...|.+.|++++|...|++..+.|   +...++.+...|.+         
T Consensus       662 -~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k---------  731 (1060)
T PLN03218        662 -AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE---------  731 (1060)
T ss_pred             -CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---------
Confidence             899999999999999887   34578888999999999999999999987765   56677777777776         


Q ss_pred             CCCCCCchHhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHH-HHH-
Q 005877          478 ESGFCTDAERHQCAHSLWWQASEQG---NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS---NAQAMFNL-GYM-  549 (672)
Q Consensus       478 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~a~~~L-g~~-  549 (672)
                             .++.++|++++++..+.+   +...+..+-..+.    ..+++++|.+.+.+..+.+   +......| |.+ 
T Consensus       732 -------~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~----k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~  800 (1060)
T PLN03218        732 -------GNQLPKALEVLSEMKRLGLCPNTITYSILLVASE----RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL  800 (1060)
T ss_pred             -------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence                   778999999999766554   4556667777777    7899999999999998753   33322222 211 


Q ss_pred             --HHc-------------C--CCCCCCHHHHHHHHHHHHhcC
Q 005877          550 --HEH-------------G--QGLPLDLHLAKRYYDQALEVD  574 (672)
Q Consensus       550 --y~~-------------g--~g~~~d~~~A~~~~~~A~~~~  574 (672)
                        |..             |  .........|+.+|++.++.+
T Consensus       801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G  842 (1060)
T PLN03218        801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG  842 (1060)
T ss_pred             HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence              111             0  001233578999999999876

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.75  E-value=4.5e-15  Score=170.31  Aligned_cols=303  Identities=12%  Similarity=-0.002  Sum_probs=156.3

Q ss_pred             hhhHHHHHHHHHHHHhCC----ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhccCCHH
Q 005877          105 VRVMEEATSEVESAAMEG----DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG---NIQSKMAVAYTYLRQDMHD  177 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~~~~~~  177 (672)
                      .+++++|+..|+.....+    +...+..+-..+..    .++.+.|...+......|   ++..+..|...|.+.|+.+
T Consensus       100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~----~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~  175 (697)
T PLN03081        100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIA----LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLI  175 (697)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHH
Confidence            466777777777754322    34555555555555    567777777777666532   4566677777777777777


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHh
Q 005877          178 KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYF  254 (672)
Q Consensus       178 ~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~  254 (672)
                      +|.+.|++..+.                   +..+...+-..+.+.|++++|++.|+++.+.|   +...+..+-..+..
T Consensus       176 ~A~~lf~~m~~~-------------------~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~  236 (697)
T PLN03081        176 DARRLFDEMPER-------------------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG  236 (697)
T ss_pred             HHHHHHhcCCCC-------------------CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence            777777764220                   11223345555667777777777777766554   23333333333332


Q ss_pred             cCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 005877          255 GLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGV  331 (672)
Q Consensus       255 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~  331 (672)
                      .     ++...+.+++....+.|   +...+..|-.+|.+    .++.++|.+.|++..+ .+..+++.|...|..    
T Consensus       237 ~-----~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k----~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~----  302 (697)
T PLN03081        237 L-----GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK----CGDIEDARCVFDGMPE-KTTVAWNSMLAGYAL----  302 (697)
T ss_pred             C-----CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH----CCCHHHHHHHHHhCCC-CChhHHHHHHHHHHh----
Confidence            2     24455555544444432   33444444555554    4555555555544322 234445555444443    


Q ss_pred             CcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCcc
Q 005877          332 EKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLK  405 (672)
Q Consensus       332 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L~~~y~~g~g~~  405 (672)
                       .|+.++|++.|++..+.+   +...+..+...+.+    .+++++|.+.+....+.|   +...+..|..+|..    .
T Consensus       303 -~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k----~  373 (697)
T PLN03081        303 -HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR----LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK----W  373 (697)
T ss_pred             -CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH----C
Confidence             335555555555544433   33344444444444    445555555555544433   22334444444444    4


Q ss_pred             CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          406 KNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       406 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      |+.++|...|++..+ .+..++..+...|...|+.++|+..|++..+.|
T Consensus       374 G~~~~A~~vf~~m~~-~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g  421 (697)
T PLN03081        374 GRMEDARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG  421 (697)
T ss_pred             CCHHHHHHHHHhCCC-CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            455555555544432 123334444444555555555555555544443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.75  E-value=1.5e-14  Score=165.99  Aligned_cols=402  Identities=10%  Similarity=-0.031  Sum_probs=327.7

Q ss_pred             hhhHHHHHHHHHHHHhC---CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHH
Q 005877          105 VRVMEEATSEVESAAME---GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVK  181 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~  181 (672)
                      .++++.|.+++......   .++..+..|...|..    .++.++|...|.+..++ +..++..|...|.+.|++++|+.
T Consensus       136 ~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k----~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~  210 (697)
T PLN03081        136 LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK----CGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFA  210 (697)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc----CCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHH
Confidence            56788899998886554   357778888888888    89999999999987654 66788999999999999999999


Q ss_pred             HHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCC
Q 005877          182 LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRG  258 (672)
Q Consensus       182 ~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~~~~~  258 (672)
                      .|++..+.+..        |       ...+...+-..+...|..+.+.+++..+.+.|   +...+..|...|...   
T Consensus       211 lf~~M~~~g~~--------p-------~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~---  272 (697)
T PLN03081        211 LFREMWEDGSD--------A-------EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC---  272 (697)
T ss_pred             HHHHHHHhCCC--------C-------ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC---
Confidence            99998764311        1       11122234455677899999999998888776   677788888999887   


Q ss_pred             cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Q 005877          259 LRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKN  335 (672)
Q Consensus       259 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~  335 (672)
                        ++.++|.+.|++.. ..+..++..|...|..    .++.++|+..|++..+.|   +...+..+...+..     .++
T Consensus       273 --g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~----~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~-----~g~  340 (697)
T PLN03081        273 --GDIEDARCVFDGMP-EKTTVAWNSMLAGYAL----HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR-----LAL  340 (697)
T ss_pred             --CCHHHHHHHHHhCC-CCChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----ccc
Confidence              49999999998764 4578889999999998    899999999999988765   66778888887875     569


Q ss_pred             HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHH
Q 005877          336 YTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMAT  412 (672)
Q Consensus       336 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~  412 (672)
                      .++|.+.+....+.+   +...+..|..+|.+    .|+.++|.+.|++..+. +..+++.+...|..    .++.++|+
T Consensus       341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k----~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~----~G~~~~A~  411 (697)
T PLN03081        341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSK----WGRMEDARNVFDRMPRK-NLISWNALIAGYGN----HGRGTKAV  411 (697)
T ss_pred             hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH----CCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHH----cCCHHHHH
Confidence            999999999999876   56788899999999    89999999999987654 56778888877776    89999999


Q ss_pred             HHHHHHHHcC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHHhCCCCcccCCCCCCCch
Q 005877          413 ALYKLVAERG---PWSSLSRWALESYLKGDVGKAFLLYSRMAEL-G---YEVAQSNAAWILDKYGEGSMCMGESGFCTDA  485 (672)
Q Consensus       413 ~~~~~a~~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-g---~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~  485 (672)
                      ++|++..+.+   +..++..+...+...|+.++|..+|+...+. |   +...++.+..+|.+                .
T Consensus       412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----------------~  475 (697)
T PLN03081        412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----------------E  475 (697)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----------------c
Confidence            9999998877   2345677777889999999999999999764 4   23345556667666                7


Q ss_pred             HhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHH
Q 005877          486 ERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLA  563 (672)
Q Consensus       486 ~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A  563 (672)
                      +++++|.+++++.-...+...+..|-..+.    ..++++.|...+++..+.  ++...+..|..+|..    .|+.++|
T Consensus       476 G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~----~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~----~G~~~~A  547 (697)
T PLN03081        476 GLLDEAYAMIRRAPFKPTVNMWAALLTACR----IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS----SGRQAEA  547 (697)
T ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh----CCCHHHH
Confidence            789999999998655567777888888888    789999999999998764  566778888999887    8999999


Q ss_pred             HHHHHHHHhcC
Q 005877          564 KRYYDQALEVD  574 (672)
Q Consensus       564 ~~~~~~A~~~~  574 (672)
                      .+.+++..+.+
T Consensus       548 ~~v~~~m~~~g  558 (697)
T PLN03081        548 AKVVETLKRKG  558 (697)
T ss_pred             HHHHHHHHHcC
Confidence            99999988775

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=3.8e-15  Score=147.94  Aligned_cols=400  Identities=15%  Similarity=0.118  Sum_probs=277.3

Q ss_pred             hhhHHHHHHHHHHHHh----CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcc
Q 005877          105 VRVMEEATSEVESAAM----EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-------GNIQSKMAVAYTYLRQ  173 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-------~~~~a~~~Lg~~y~~~  173 (672)
                      ..-+.+|+..|+-.+.    ++......++|.+|..    .+++.+|+++|+-|+++       -.+..+.++|..+.+.
T Consensus       214 ndm~~ealntyeiivknkmf~nag~lkmnigni~~k----kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~  289 (840)
T KOG2003|consen  214 NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFK----KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA  289 (840)
T ss_pred             hHHHHHHhhhhhhhhcccccCCCceeeeeecceeee----hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence            4456788888877443    2445566788888888    88888888888888773       1346677788888888


Q ss_pred             CCHHHHHHHHHHHHHHHHhhh----------hc--------------c-CCCCccc-chhcccCchhhh----------h
Q 005877          174 DMHDKAVKLYAELAEIAVNSF----------LI--------------S-KDSPVIE-PIRIHNGAEENK----------G  217 (672)
Q Consensus       174 ~~~~~A~~~y~~a~~~~~~~~----------~~--------------~-~~~~~~~-~~~l~~~~~~~~----------~  217 (672)
                      |.|+.||..|+.+++..|+-.          ..              . |.-+.-. .+.-.+....++          -
T Consensus       290 gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk  369 (840)
T KOG2003|consen  290 GQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLK  369 (840)
T ss_pred             ccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHH
Confidence            888888888887777655311          00              0 0000000 000011111000          0


Q ss_pred             Hh-hhccCChHHHHHHHHHHHHc--------------------CCHH----HHHHHHHHHHhcCCCcccCHHHHHHHHHH
Q 005877          218 AL-RKSRGEDDEAFQILEYQAQK--------------------GNAG----AMYKIGLFYYFGLRGLRRDRTKALMWFSK  272 (672)
Q Consensus       218 ~~-~~~~g~~~~Ai~~~~~aa~~--------------------~~~~----a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~  272 (672)
                      .+ .....+-+++|..--+.+.+                    .+++    .-.+-+.-|+..     +|++.|++.++-
T Consensus       370 ~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~-----~d~~~aieilkv  444 (840)
T KOG2003|consen  370 NMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN-----GDIEGAIEILKV  444 (840)
T ss_pred             HHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc-----cCHHHHHHHHHH
Confidence            00 11122334444433332211                    0111    112223445555     499999999887


Q ss_pred             HHHcCC---HHHHHHHHHHHH-cCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Q 005877          273 AADKGE---PQSMEFLGEIYA-RGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA  346 (672)
Q Consensus       273 a~~~~~---~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a  346 (672)
                      .-++++   +.+..+|..++. .|   -.++..|-.|-..++..+  ++.++.+-|.+-+.     .||+++|.++|+.|
T Consensus       445 ~~~kdnk~~saaa~nl~~l~flqg---gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~-----ngd~dka~~~ykea  516 (840)
T KOG2003|consen  445 FEKKDNKTASAAANNLCALRFLQG---GKDFADAQQYADIALNIDRYNAAALTNKGNIAFA-----NGDLDKAAEFYKEA  516 (840)
T ss_pred             HHhccchhhHHHhhhhHHHHHHhc---ccchhHHHHHHHHHhcccccCHHHhhcCCceeee-----cCcHHHHHHHHHHH
Confidence            655543   334556655544 33   468899999999998765  88899998887764     57999999999999


Q ss_pred             HhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH--HHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877          347 ADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA--ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG  422 (672)
Q Consensus       347 ~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A--~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~  422 (672)
                      +..+  -.++.+++|..+..    .++.++|+++|.+.  +-.++.+.++.++.+|+.    ..|..+|++||.++...-
T Consensus       517 l~ndasc~ealfniglt~e~----~~~ldeald~f~klh~il~nn~evl~qianiye~----led~aqaie~~~q~~sli  588 (840)
T KOG2003|consen  517 LNNDASCTEALFNIGLTAEA----LGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL----LEDPAQAIELLMQANSLI  588 (840)
T ss_pred             HcCchHHHHHHHHhcccHHH----hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhCHHHHHHHHHHhcccC
Confidence            9876  47899999999999    99999999999884  567899999999999997    899999999999997765


Q ss_pred             --ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH
Q 005877          423 --PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA  498 (672)
Q Consensus       423 --~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  498 (672)
                        +|..+..||..|-+.||..+|+.++-.+..-  -+.+..-+||-.|..                ..-.++|+.+++++
T Consensus       589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid----------------tqf~ekai~y~eka  652 (840)
T KOG2003|consen  589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID----------------TQFSEKAINYFEKA  652 (840)
T ss_pred             CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh----------------hHHHHHHHHHHHHH
Confidence              5678899999999999999999998777443  355555566665544                55689999999997


Q ss_pred             HhCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 005877          499 SEQGN--EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYM  549 (672)
Q Consensus       499 ~~~~~--~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~  549 (672)
                      +-..+  ..-...++.|+.    ..|+|++|...|+..-.  +.+.+.+-.|-.+
T Consensus       653 aliqp~~~kwqlmiasc~r----rsgnyqka~d~yk~~hrkfpedldclkflvri  703 (840)
T KOG2003|consen  653 ALIQPNQSKWQLMIASCFR----RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI  703 (840)
T ss_pred             HhcCccHHHHHHHHHHHHH----hcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            55443  444568899999    89999999999998754  3666666665544

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.73  E-value=7.9e-13  Score=153.98  Aligned_cols=373  Identities=13%  Similarity=0.036  Sum_probs=303.1

Q ss_pred             cCCHHHHHHHHHHHHhCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhh
Q 005877          141 ERNKGKAFLYHHFAAEGGN----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENK  216 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~~~~----~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  216 (672)
                      .++.++|...++.....|.    ......+-..+...+..++|+.+++....            |       +..+...+
T Consensus       383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------------p-------d~~Tyn~L  443 (1060)
T PLN03218        383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------------P-------TLSTFNML  443 (1060)
T ss_pred             CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------------C-------CHHHHHHH
Confidence            6789999999998877653    22333455567778999999998876532            1       11122234


Q ss_pred             hHhhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 005877          217 GALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYA  290 (672)
Q Consensus       217 ~~~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~  290 (672)
                      -..+...|+.++|...++++.+.|   +...+..|-..|...     ++.++|.+.|++..+.|   +...+..|-..|.
T Consensus       444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~-----G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~  518 (1060)
T PLN03218        444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS-----GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA  518 (1060)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            556778899999999999998876   678888888888877     49999999999998764   6788899999999


Q ss_pred             cCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHH
Q 005877          291 RGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----EEAGGHYNLGVMY  362 (672)
Q Consensus       291 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y  362 (672)
                      +    .+++++|+..|++..+.+   +...++.|-..|..     .++.++|.+.|.+..+.     .+...+..|-.+|
T Consensus       519 k----~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k-----~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay  589 (1060)
T PLN03218        519 R----AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ-----SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC  589 (1060)
T ss_pred             H----CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence            8    899999999999998765   67788888888875     56999999999998752     2566788888888


Q ss_pred             HcCCCchhcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHh
Q 005877          363 YKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---PWSSLSRWALESYL  436 (672)
Q Consensus       363 ~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~  436 (672)
                      .+    .+++++|.+.|++..+.+   +...+..+...|..    .++.++|+.+|++..+.+   +...+..+...+..
T Consensus       590 ~k----~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k  661 (1060)
T PLN03218        590 AN----AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH  661 (1060)
T ss_pred             HH----CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            88    899999999999998876   45777778877876    899999999999999887   33467788888999


Q ss_pred             cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC---CCHHHHHHH
Q 005877          437 KGDVGKAFLLYSRMAELG---YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ---GNEHAALLI  510 (672)
Q Consensus       437 ~g~~~~A~~~~~~a~~~g---~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~l  510 (672)
                      .|++++|...++++.+.|   +....+.+...|.+                .+++++|+++|+...+.   .+...++.|
T Consensus       662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k----------------~G~~eeA~~lf~eM~~~g~~PdvvtyN~L  725 (1060)
T PLN03218        662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN----------------AKNWKKALELYEDIKSIKLRPTVSTMNAL  725 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------------CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            999999999999999887   56777788888877                77899999999976553   357778899


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          511 GDAYYYGRGTQRDYERAAEAYMHARSQ---SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       511 G~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      -..|.    ..+++++|.+.|++..+.   .+...+..|-..+.+    .++.++|.++++++.+.+....
T Consensus       726 I~gy~----k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k----~G~le~A~~l~~~M~k~Gi~pd  788 (1060)
T PLN03218        726 ITALC----EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER----KDDADVGLDLLSQAKEDGIKPN  788 (1060)
T ss_pred             HHHHH----HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCC
Confidence            99998    889999999999997764   366667777666665    8899999999999998864433

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.6e-13  Score=140.98  Aligned_cols=428  Identities=16%  Similarity=0.108  Sum_probs=308.5

Q ss_pred             hhhHHHHHHHHHHHHhC-CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005877          105 VRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFA-AEGGNIQSKMAVAYTYLRQDMHDKAVKL  182 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A-~~~~~~~a~~~Lg~~y~~~~~~~~A~~~  182 (672)
                      ...|.-|.-+-++.+.. ++|.-.+.+|.+|..    .+++.+|....+.- .+..+....+.++.++...++++.|...
T Consensus        29 q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~----~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~v  104 (611)
T KOG1173|consen   29 QHRYKTALFWADKVAGLTNDPADIYWLAQVLYL----GRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLV  104 (611)
T ss_pred             HHhhhHHHHHHHHHHhccCChHHHHHHHHHHHh----hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999994443 889999999999988    77888888777654 3467788899999999999999999888


Q ss_pred             HHHHHHHHHhhhhccCC--CCcc------c--chhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005877          183 YAELAEIAVNSFLISKD--SPVI------E--PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGL  250 (672)
Q Consensus       183 y~~a~~~~~~~~~~~~~--~~~~------~--~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~  250 (672)
                      ..+. .+....+...+.  ...+      +  ...+...+-.-.|.+|....+.++|-..|.++...  ..-++...|-.
T Consensus       105 l~~~-~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs  183 (611)
T KOG1173|consen  105 LGRG-HVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVS  183 (611)
T ss_pred             hccc-chhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            7744 221111110000  0000      0  01111122234677788888899999999987544  35555554433


Q ss_pred             HHHhcC-------CC-----ccc-CHHHHHHHHHHHH-H------------------cCCHHHHHHHHHHHHcCCCCcCC
Q 005877          251 FYYFGL-------RG-----LRR-DRTKALMWFSKAA-D------------------KGEPQSMEFLGEIYARGAGVERN  298 (672)
Q Consensus       251 ~y~~~~-------~~-----~~~-~~~~A~~~~~~a~-~------------------~~~~~a~~~Lg~~y~~g~g~~~~  298 (672)
                      ..+-..       .+     +.+ +.+.-...|+--. +                  ..++......+..+..    ..+
T Consensus       184 ~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~----~c~  259 (611)
T KOG1173|consen  184 AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYY----GCR  259 (611)
T ss_pred             HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHH----cCh
Confidence            332221       00     001 1111122222110 0                  1345666677777777    788


Q ss_pred             HHHHHHHHHHHHHcC--CHH-HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHH
Q 005877          299 YTKALEWLTHAARQQ--LYS-AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVK  373 (672)
Q Consensus       299 ~~~A~~~~~~a~~~~--~~~-a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~  373 (672)
                      +.+-.+..+..++..  ++. --..||-++..      ++..+=...-.+.++.  ..+-+++.+|..|..    .+.+.
T Consensus       260 f~~c~kit~~lle~dpfh~~~~~~~ia~l~el------~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~----i~k~s  329 (611)
T KOG1173|consen  260 FKECLKITEELLEKDPFHLPCLPLHIACLYEL------GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM----IGKYS  329 (611)
T ss_pred             HHHHHHHhHHHHhhCCCCcchHHHHHHHHHHh------cccchHHHHHHHHHHhCCCCCcchhhHHHHHHH----hcCcH
Confidence            999999999888864  333 34578866654      3433333333444443  578899999999999    89999


Q ss_pred             HHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877          374 LACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSR  449 (672)
Q Consensus       374 ~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~  449 (672)
                      +|..+|.||...+  ...+|..+|..+..    .+..++|+..|..|.+.-+  -...+.+|..|...++++-|-.+|.+
T Consensus       330 eARry~SKat~lD~~fgpaWl~fghsfa~----e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~  405 (611)
T KOG1173|consen  330 EARRYFSKATTLDPTFGPAWLAFGHSFAG----EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ  405 (611)
T ss_pred             HHHHHHHHHhhcCccccHHHHHHhHHhhh----cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence            9999999998765  56888888888876    9999999999999998754  45788899999999999999999999


Q ss_pred             HHH--cCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC----CC-----HHHHHHHHHHHHhCC
Q 005877          450 MAE--LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ----GN-----EHAALLIGDAYYYGR  518 (672)
Q Consensus       450 a~~--~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~-----~~a~~~lG~~y~~g~  518 (672)
                      |..  +.++...+.+|.+...                .+.+.+|+.+|+.++..    .+     ...+.+||.+|.   
T Consensus       406 A~ai~P~Dplv~~Elgvvay~----------------~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R---  466 (611)
T KOG1173|consen  406 ALAIAPSDPLVLHELGVVAYT----------------YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR---  466 (611)
T ss_pred             HHhcCCCcchhhhhhhheeeh----------------HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH---
Confidence            954  4688888888887766                77899999999977522    22     344789999999   


Q ss_pred             CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877          519 GTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       519 g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  579 (672)
                       ..+.+.+|+.+|++|+..  .++..+-.+|++|..    .|++++|+.+|.||+-++|+...
T Consensus       467 -kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l----lgnld~Aid~fhKaL~l~p~n~~  524 (611)
T KOG1173|consen  467 -KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL----LGNLDKAIDHFHKALALKPDNIF  524 (611)
T ss_pred             -HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCccHH
Confidence             899999999999999774  789999999999987    99999999999999999999743

>PLN03077 Protein ECB2; Provisional

Probab=99.70  E-value=1.7e-13  Score=161.06  Aligned_cols=428  Identities=13%  Similarity=0.014  Sum_probs=266.1

Q ss_pred             cCCCCCCcccccCCCCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCC---ChHHHHHHHHHhhcCCcccC
Q 005877           66 NLDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEG---DPHARSVLGFLYGMGMMRER  142 (672)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~G~g~~~  142 (672)
                      .++++.|..+|++...++ .-.+..+-..+.       ..+++++|+..|++....|   +...+..+-..+..    .+
T Consensus       235 ~g~~~~A~~lf~~m~~~d-~~s~n~li~~~~-------~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~----~g  302 (857)
T PLN03077        235 CGDVVSARLVFDRMPRRD-CISWNAMISGYF-------ENGECLEGLELFFTMRELSVDPDLMTITSVISACEL----LG  302 (857)
T ss_pred             CCCHHHHHHHHhcCCCCC-cchhHHHHHHHH-------hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC
Confidence            456777777777765443 222222222222       2578899999999865543   33344444444444    77


Q ss_pred             CHHHHHHHHHHHHhCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHh
Q 005877          143 NKGKAFLYHHFAAEGG---NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL  219 (672)
Q Consensus       143 d~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  219 (672)
                      +.+.|.+.+....+.|   +...+..|...|.+.|+.++|.+.|++....                   +..++..+...
T Consensus       303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-------------------d~~s~n~li~~  363 (857)
T PLN03077        303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-------------------DAVSWTAMISG  363 (857)
T ss_pred             ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------------------CeeeHHHHHHH
Confidence            8888888888888754   6788888999999999999999998875321                   11234456677


Q ss_pred             hhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Q 005877          220 RKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGA  293 (672)
Q Consensus       220 ~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~  293 (672)
                      +.+.|++++|++.|+++.+.|   +...+..+-..+...     ++.++|.+.+..+.+.|   +...+..|-.+|.+  
T Consensus       364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-----g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k--  436 (857)
T PLN03077        364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL-----GDLDVGVKLHELAERKGLISYVVVANALIEMYSK--  436 (857)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-----chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH--
Confidence            888899999999999876664   344444444455444     48889999998888865   46677888888888  


Q ss_pred             CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHH--------------
Q 005877          294 GVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYN--------------  357 (672)
Q Consensus       294 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~--------------  357 (672)
                        .++.++|.+.|++..+. +..+++.+-..|..     .++.++|+.+|++..+.-  +...+..              
T Consensus       437 --~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~-----~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~  508 (857)
T PLN03077        437 --CKCIDKALEVFHNIPEK-DVISWTSIIAGLRL-----NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCG  508 (857)
T ss_pred             --cCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHH-----CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHh
Confidence              88899999988876543 45567777666664     458888888888876532  2222222              


Q ss_pred             ---------------------HHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHH
Q 005877          358 ---------------------LGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYK  416 (672)
Q Consensus       358 ---------------------Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~  416 (672)
                                           |-.+|.+    .|+.++|...|...  ..+..++..+...|..    .|+.++|+.+|+
T Consensus       509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k----~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~----~G~~~~A~~lf~  578 (857)
T PLN03077        509 KEIHAHVLRTGIGFDGFLPNALLDLYVR----CGRMNYAWNQFNSH--EKDVVSWNILLTGYVA----HGKGSMAVELFN  578 (857)
T ss_pred             HHHHHHHHHhCCCccceechHHHHHHHH----cCCHHHHHHHHHhc--CCChhhHHHHHHHHHH----cCCHHHHHHHHH
Confidence                                 2234444    55666666666654  3455555555555554    566666666666


Q ss_pred             HHHHcC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHH-HcC---CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHH
Q 005877          417 LVAERG---PWSSLSRWALESYLKGDVGKAFLLYSRMA-ELG---YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ  489 (672)
Q Consensus       417 ~a~~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~-~~g---~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~  489 (672)
                      +..+.+   +..++..+-..+...|+.++|..+|+... +.|   +......+..+|.+                .++++
T Consensus       579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r----------------~G~~~  642 (857)
T PLN03077        579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR----------------AGKLT  642 (857)
T ss_pred             HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----------------CCCHH
Confidence            666554   12234444455566666666666666665 333   22334445555554                55666


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 005877          490 CAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYY  567 (672)
Q Consensus       490 ~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  567 (672)
                      +|.+++++..-..++..+..|=..+.    ..++.+.|....++..+  ++++..+..|+.+|..    .|+.++|.+..
T Consensus       643 eA~~~~~~m~~~pd~~~~~aLl~ac~----~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~----~g~~~~a~~vr  714 (857)
T PLN03077        643 EAYNFINKMPITPDPAVWGALLNACR----IHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD----AGKWDEVARVR  714 (857)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHH----HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH----CCChHHHHHHH
Confidence            66666665432333444444444444    45666666555555543  3556666666666655    56666666666


Q ss_pred             HHHHhc
Q 005877          568 DQALEV  573 (672)
Q Consensus       568 ~~A~~~  573 (672)
                      +...+.
T Consensus       715 ~~M~~~  720 (857)
T PLN03077        715 KTMREN  720 (857)
T ss_pred             HHHHHc
Confidence            666544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=9.7e-14  Score=139.08  Aligned_cols=343  Identities=15%  Similarity=0.088  Sum_probs=225.4

Q ss_pred             ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCC
Q 005877          123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS  200 (672)
Q Consensus       123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~  200 (672)
                      ++...|..|.++..    .+...+|+..+..++.  |=+-.|+..|+.+.....+...-+       ...          
T Consensus       163 D~fllYL~Gvv~k~----~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-------~~l----------  221 (559)
T KOG1155|consen  163 DEFLLYLYGVVLKE----LGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-------VGL----------  221 (559)
T ss_pred             hhHHHHHHHHHHHh----hchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-------hcC----------
Confidence            34555566666655    5666666666666665  555566666655543211110000       000          


Q ss_pred             CcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Q 005877          201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG  277 (672)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~  277 (672)
                      +.-    ..--...-+..++....+.++++.-++..+..|   ++-.....|.+.+..     +|+++|+..|+...+.+
T Consensus       222 ~~~----~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~-----rDfD~a~s~Feei~knD  292 (559)
T KOG1155|consen  222 PSD----MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQ-----RDFDQAESVFEEIRKND  292 (559)
T ss_pred             ccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhcC
Confidence            000    000001124445555567788888888887775   455556667777776     59999999999987752


Q ss_pred             -----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877          278 -----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAA---RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN  349 (672)
Q Consensus       278 -----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~---~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~  349 (672)
                           +-..+.+.  +|.     . +-...+.++-+-+   ++=.++.+.-+|..|..     +++.++|+.||++|++.
T Consensus       293 PYRl~dmdlySN~--LYv-----~-~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSl-----r~eHEKAv~YFkRALkL  359 (559)
T KOG1155|consen  293 PYRLDDMDLYSNV--LYV-----K-NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSL-----RSEHEKAVMYFKRALKL  359 (559)
T ss_pred             CCcchhHHHHhHH--HHH-----H-hhhHHHHHHHHHHHHhccCCccceeeehhHHHH-----HHhHHHHHHHHHHHHhc
Confidence                 11221111  122     1 2223334433322   22356777777877774     45888888888888877


Q ss_pred             C--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh
Q 005877          350 E--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS  425 (672)
Q Consensus       350 ~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~  425 (672)
                      +  ...++.-+|.=|..    .++...|++.|++|++.+  +-.|||-||.+|..    .+-..=|+-||++|.+..|.+
T Consensus       360 Np~~~~aWTLmGHEyvE----mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei----m~Mh~YaLyYfqkA~~~kPnD  431 (559)
T KOG1155|consen  360 NPKYLSAWTLMGHEYVE----MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI----MKMHFYALYYFQKALELKPND  431 (559)
T ss_pred             CcchhHHHHHhhHHHHH----hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH----hcchHHHHHHHHHHHhcCCCc
Confidence            4  67788888888888    888888888888888755  55788888888886    777788888888888877654


Q ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh-
Q 005877          426 --SLSRWALESYLKGDVGKAFLLYSRMAELGYE--VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE-  500 (672)
Q Consensus       426 --a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~--~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-  500 (672)
                        .+..||.+|.+.++.++|+..|..|+..|+.  .++..||.++.+                .++.++|..+|++-++ 
T Consensus       432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~----------------l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE----------------LKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH----------------HHhHHHHHHHHHHHHHH
Confidence              4566788888888888888888888888765  788888888887                7778888888887544 


Q ss_pred             ------CC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005877          501 ------QG--NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS  536 (672)
Q Consensus       501 ------~~--~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~  536 (672)
                            .+  -..+...|+..+.    ..+|+++|..|..++..
T Consensus       496 ~~~eg~~~~~t~ka~~fLA~~f~----k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  496 SELEGEIDDETIKARLFLAEYFK----KMKDFDEASYYATLVLK  535 (559)
T ss_pred             HHhhcccchHHHHHHHHHHHHHH----hhcchHHHHHHHHHHhc
Confidence                  12  2456677888888    88899988887776654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=5.8e-15  Score=154.56  Aligned_cols=292  Identities=15%  Similarity=0.126  Sum_probs=228.3

Q ss_pred             HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHH
Q 005877          243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAY  318 (672)
Q Consensus       243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~  318 (672)
                      ..+..+|..|...   ..-+..+|+..|++.-.  .+.......+|..|+.    ..+|++|.++|+.+-+..  .....
T Consensus       318 ~llr~~~~~~~~~---s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFE----l~~Y~~a~~~F~~~r~~~p~rv~~m  390 (638)
T KOG1126|consen  318 ELLRGLGEGYRSL---SQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFE----LIEYDQAERIFSLVRRIEPYRVKGM  390 (638)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccccccch
Confidence            3444455554432   12377899999999322  3566888999999999    999999999999987653  11111


Q ss_pred             HHHHHHHHcCCCCCcCCHHHHHHHHHH-HHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHH
Q 005877          319 NGIGYLYVKGYGVEKKNYTKAKEYFEK-AADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQ  393 (672)
Q Consensus       319 ~~Lg~~y~~g~g~~~~~~~~A~~~~~~-a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~  393 (672)
                      .-...+.-+    .+  -+-++.++-+ .++.  ..|++|.-+|.||.-    ++|++.|+++|++|++.+  ..-++.-
T Consensus       391 eiyST~LWH----Lq--~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL----Qkdh~~Aik~f~RAiQldp~faYayTL  460 (638)
T KOG1126|consen  391 EIYSTTLWH----LQ--DEVALSYLAQDLIDTDPNSPESWCALGNCFSL----QKDHDTAIKCFKRAIQLDPRFAYAYTL  460 (638)
T ss_pred             hHHHHHHHH----HH--hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh----hhHHHHHHHHHHHhhccCCccchhhhh
Confidence            112222211    12  2334444433 3333  589999999999998    899999999999999865  4566667


Q ss_pred             HHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Q 005877          394 LAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKY  469 (672)
Q Consensus       394 L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~  469 (672)
                      +|.=+..    ..++++|..+|++|+...  +-.+++-+|.+|.++++++.|..+|++|++.+  +..-...++.++.+ 
T Consensus       461 lGhE~~~----~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-  535 (638)
T KOG1126|consen  461 LGHESIA----TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-  535 (638)
T ss_pred             cCChhhh----hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-
Confidence            7755544    889999999999999887  46799999999999999999999999998776  66667788999888 


Q ss_pred             CCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHH
Q 005877          470 GEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFN  545 (672)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~  545 (672)
                                     .++.++|+.++++|+..+  ++...|..|.+++    ..+++++|...+++-.+  +++...++-
T Consensus       536 ---------------~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~----~~~~~~eal~~LEeLk~~vP~es~v~~l  596 (638)
T KOG1126|consen  536 ---------------LKRKDKALQLYEKAIHLDPKNPLCKYHRASILF----SLGRYVEALQELEELKELVPQESSVFAL  596 (638)
T ss_pred             ---------------hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH----hhcchHHHHHHHHHHHHhCcchHHHHHH
Confidence                           788999999999997654  6888899999999    89999999999998655  688999999


Q ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877          546 LGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       546 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  579 (672)
                      ||.+|..    .|+.+.|+..|--|.+++|...-
T Consensus       597 lgki~k~----~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  597 LGKIYKR----LGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHHH----HccchHHHHhhHHHhcCCCccch
Confidence            9999987    89999999999999999988654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=5.5e-15  Score=154.75  Aligned_cols=294  Identities=17%  Similarity=0.164  Sum_probs=230.4

Q ss_pred             HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 005877          125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV  202 (672)
Q Consensus       125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~  202 (672)
                      +.+..+|..|..-  ..-+..+|+..|.+.-.  .+-...+..+|..|....+|++|.++|+.+-+..|-          
T Consensus       318 ~llr~~~~~~~~~--s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~----------  385 (638)
T KOG1126|consen  318 ELLRGLGEGYRSL--SQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY----------  385 (638)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------
Confidence            3444555555430  03356789999998433  355688888999999999999999999988765432          


Q ss_pred             ccchhcccCchhhhhHhhhccCChHHHHHHHHH-HH--HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--C
Q 005877          203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEY-QA--QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G  277 (672)
Q Consensus       203 ~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~-aa--~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~  277 (672)
                          ++. ++...--.+|.-+  .+-++.++-+ .+  ++..|+++..+|.+|.-+     +|++.|++.|++|+..  +
T Consensus       386 ----rv~-~meiyST~LWHLq--~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ-----kdh~~Aik~f~RAiQldp~  453 (638)
T KOG1126|consen  386 ----RVK-GMEIYSTTLWHLQ--DEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ-----KDHDTAIKCFKRAIQLDPR  453 (638)
T ss_pred             ----ccc-chhHHHHHHHHHH--hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh-----hHHHHHHHHHHHhhccCCc
Confidence                110 0000001111111  1112222222 23  446899999999999766     6999999999999874  6


Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHH
Q 005877          278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAG  353 (672)
Q Consensus       278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~  353 (672)
                      .+.++..+|.=+..    ..++++|..+|++|+..+  +-.|++.||.+|..     ++.++.|.-+|++|++.+  +..
T Consensus       454 faYayTLlGhE~~~----~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-----qek~e~Ae~~fqkA~~INP~nsv  524 (638)
T KOG1126|consen  454 FAYAYTLLGHESIA----TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-----QEKLEFAEFHFQKAVEINPSNSV  524 (638)
T ss_pred             cchhhhhcCChhhh----hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-----cchhhHHHHHHHhhhcCCccchh
Confidence            79999999998887    899999999999999764  78899999999996     679999999999999986  777


Q ss_pred             HHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh--HHHH
Q 005877          354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SLSR  429 (672)
Q Consensus       354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~~  429 (672)
                      ....+|.++..    .|+.++|+.+|++|+..  .++...+.-+.++..    .+++++|+..+++..+.-|.+  .++.
T Consensus       525 i~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~----~~~~~eal~~LEeLk~~vP~es~v~~l  596 (638)
T KOG1126|consen  525 ILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS----LGRYVEALQELEELKELVPQESSVFAL  596 (638)
T ss_pred             HHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh----hcchHHHHHHHHHHHHhCcchHHHHHH
Confidence            88899999999    99999999999999875  488899999999987    899999999999999888654  5888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCHHHH
Q 005877          430 WALESYLKGDVGKAFLLYSRMAELGYEVAQ  459 (672)
Q Consensus       430 lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~  459 (672)
                      +|.+|-+.|+.+.|+..|--|.+.+..-++
T Consensus       597 lgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  597 LGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            999999999999999999999888755554

>PLN03077 Protein ECB2; Provisional

Probab=99.67  E-value=1e-12  Score=154.62  Aligned_cols=77  Identities=9%  Similarity=0.055  Sum_probs=37.4

Q ss_pred             hHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHH
Q 005877          485 AERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS---NAQAMFNLGYMHEHGQGLPLDLH  561 (672)
Q Consensus       485 ~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~  561 (672)
                      .++.++|...|+..  ..+..+++.+...|.    ..|+.++|++.|++-.+.+   +...+..|-..+.+    .|+.+
T Consensus       537 ~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~----~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~v~  606 (857)
T PLN03077        537 CGRMNYAWNQFNSH--EKDVVSWNILLTGYV----AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR----SGMVT  606 (857)
T ss_pred             cCCHHHHHHHHHhc--CCChhhHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh----cChHH
Confidence            34455555555544  344555555555555    5555566666555544421   22222222222332    45555


Q ss_pred             HHHHHHHHHH
Q 005877          562 LAKRYYDQAL  571 (672)
Q Consensus       562 ~A~~~~~~A~  571 (672)
                      +|.++|+...
T Consensus       607 ea~~~f~~M~  616 (857)
T PLN03077        607 QGLEYFHSME  616 (857)
T ss_pred             HHHHHHHHHH
Confidence            5555555555

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.65  E-value=2.1e-14  Score=137.56  Aligned_cols=231  Identities=15%  Similarity=0.122  Sum_probs=199.9

Q ss_pred             CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHH
Q 005877          314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA  390 (672)
Q Consensus       314 ~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a  390 (672)
                      +..-...+|.+|+.     .|-+.+|.+.++.++++ ..++.+..|..+|..    .++...|+..|...++.  ++..-
T Consensus       222 dwwWk~Q~gkCylr-----Lgm~r~AekqlqssL~q~~~~dTfllLskvY~r----idQP~~AL~~~~~gld~fP~~VT~  292 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLR-----LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQR----IDQPERALLVIGEGLDSFPFDVTY  292 (478)
T ss_pred             hHHHHHHHHHHHHH-----hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHH----hccHHHHHHHHhhhhhcCCchhhh
Confidence            44556789999996     56889999999999887 589999999999999    89999999999999885  45566


Q ss_pred             HHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 005877          391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWIL  466 (672)
Q Consensus       391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l  466 (672)
                      ..-.+++++.    .++.+.|+++|+.+++..+  .++..-+|..|+..++++.|+.+|++.+++|  +++-..|+|.+.
T Consensus       293 l~g~ARi~ea----m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC  368 (478)
T KOG1129|consen  293 LLGQARIHEA----MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCC  368 (478)
T ss_pred             hhhhHHHHHH----HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence            6677788987    8999999999999999884  5678888888999999999999999999998  788888999876


Q ss_pred             HHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC---C--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC
Q 005877          467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ---G--NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN  539 (672)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~--~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~  539 (672)
                      ..                .++++-++..+++|...   .  -+|.|||||.+..    ..||+.-|.++|+.|+..  +|
T Consensus       369 ~y----------------aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV----~iGD~nlA~rcfrlaL~~d~~h  428 (478)
T KOG1129|consen  369 LY----------------AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV----TIGDFNLAKRCFRLALTSDAQH  428 (478)
T ss_pred             Hh----------------hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE----eccchHHHHHHHHHHhccCcch
Confidence            55                66889999999987432   2  2889999999998    889999999999999874  78


Q ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchh
Q 005877          540 AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPV  581 (672)
Q Consensus       540 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  581 (672)
                      .++++|||.+-..    .||.+.|+.++..|....|+...+.
T Consensus       429 ~ealnNLavL~~r----~G~i~~Arsll~~A~s~~P~m~E~~  466 (478)
T KOG1129|consen  429 GEALNNLAVLAAR----SGDILGARSLLNAAKSVMPDMAEVT  466 (478)
T ss_pred             HHHHHhHHHHHhh----cCchHHHHHHHHHhhhhCccccccc
Confidence            9999999998665    8999999999999999999876543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.65  E-value=1.1e-11  Score=140.61  Aligned_cols=396  Identities=10%  Similarity=-0.019  Sum_probs=277.7

Q ss_pred             HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhh
Q 005877          118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL  195 (672)
Q Consensus       118 a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~  195 (672)
                      .+.++.+...+.-+.+...    .||++.|+..|+++.+  +.++.+...+..++...|+.++|+.++++++...+.   
T Consensus        28 ~~~p~~~~~~y~~aii~~r----~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~---  100 (822)
T PRK14574         28 VVNPAMADTQYDSLIIRAR----AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNI---  100 (822)
T ss_pred             ccCccchhHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCC---
Confidence            4456778889999999888    9999999999999987  566556668999999999999999999998731110   


Q ss_pred             ccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHH
Q 005877          196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKA  273 (672)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a  273 (672)
                             ..      .....++.++...|++++|++.|+++.+.  +++.++..|+.+|...     ++.++|++.++++
T Consensus       101 -------~~------~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~-----~q~~eAl~~l~~l  162 (822)
T PRK14574        101 -------SS------RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA-----GRGGVVLKQATEL  162 (822)
T ss_pred             -------CH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc-----CCHHHHHHHHHHh
Confidence                   00      11112466888999999999999998666  6899999888888877     5999999999998


Q ss_pred             HHcC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC
Q 005877          274 ADKG-EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE  350 (672)
Q Consensus       274 ~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~  350 (672)
                      +... ....+..++.++..    .++..+|+..|+++++.  ++......+-.....     .+-...|.+..++--+.-
T Consensus       163 ~~~dp~~~~~l~layL~~~----~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~-----~~~~~~a~~l~~~~p~~f  233 (822)
T PRK14574        163 AERDPTVQNYMTLSYLNRA----TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQR-----NRIVEPALRLAKENPNLV  233 (822)
T ss_pred             cccCcchHHHHHHHHHHHh----cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCcHHHHHHHHhCcccc
Confidence            7752 22222444555544    56776799999999976  467776666666553     234555665554322111


Q ss_pred             CHH-----------HHHHHHHHHHcCCCchh---cHHHHHHHHHHHHHc--CCHH--HH------HHHHHHHHcCCCccC
Q 005877          351 EAG-----------GHYNLGVMYYKGIGVKR---DVKLACKYFLVAANA--GHQK--AF------YQLAKMFHTGVGLKK  406 (672)
Q Consensus       351 ~~~-----------a~~~Lg~~y~~g~g~~~---~~~~A~~~~~~A~~~--~~~~--a~------~~L~~~y~~g~g~~~  406 (672)
                      .+.           -..+.+.+...  ....   -.+.|+.-+++....  ..|+  ..      -.++.+..     .+
T Consensus       234 ~~~~~~~l~~~~~a~~vr~a~~~~~--~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~-----r~  306 (822)
T PRK14574        234 SAEHYRQLERDAAAEQVRMAVLPTR--SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV-----RH  306 (822)
T ss_pred             CHHHHHHHHHHHHHHHHhhcccccc--cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH-----hh
Confidence            111           11111111111  0011   234455555555441  1121  11      23333333     68


Q ss_pred             CHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCcc
Q 005877          407 NLHMATALYKLVAERG---PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--------YEVAQSNAAWILDKYGEGSMC  475 (672)
Q Consensus       407 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--------~~~a~~nla~~l~~~~~~~~~  475 (672)
                      ++.+++..|+..-..+   |+-+....|..|...+.+++|+..|+.++...        ....+.-|-+.|..       
T Consensus       307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld-------  379 (822)
T PRK14574        307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE-------  379 (822)
T ss_pred             hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh-------
Confidence            9999999999987666   45577788999999999999999999997643        11222334444443       


Q ss_pred             cCCCCCCCchHhHHHHHHHHHHHHhCC-----------------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--
Q 005877          476 MGESGFCTDAERHQCAHSLWWQASEQG-----------------NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--  536 (672)
Q Consensus       476 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--  536 (672)
                               .+++++|..+..+..+..                 ..++...++.++.    -.+|+.+|.+.+++.+.  
T Consensus       380 ---------~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~----~~gdl~~Ae~~le~l~~~a  446 (822)
T PRK14574        380 ---------SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV----ALNDLPTAQKKLEDLSSTA  446 (822)
T ss_pred             ---------cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC
Confidence                     789999999998754411                 1456667888887    67999999999999866  


Q ss_pred             cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          537 QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       537 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ++|+..+..+|.++..    .+....|.++++.+..++|+..
T Consensus       447 P~n~~l~~~~A~v~~~----Rg~p~~A~~~~k~a~~l~P~~~  484 (822)
T PRK14574        447 PANQNLRIALASIYLA----RDLPRKAEQELKAVESLAPRSL  484 (822)
T ss_pred             CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCccH
Confidence            5899999999999987    8999999999999999988864

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=1.7e-12  Score=133.57  Aligned_cols=408  Identities=16%  Similarity=0.151  Sum_probs=290.4

Q ss_pred             CCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHH-HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHH-------
Q 005877           83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVES-AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFA-------  154 (672)
Q Consensus        83 ~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A-------  154 (672)
                      .+|...|-++.++..       .+++..|...... ..+..+..+.+..+.++..    .++.+.|.......       
T Consensus        47 ~dp~d~~~~aq~l~~-------~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~----lk~~~~al~vl~~~~~~~~~f  115 (611)
T KOG1173|consen   47 NDPADIYWLAQVLYL-------GRQYERAAHLITTYKLEKRDIACRYLAAKCLVK----LKEWDQALLVLGRGHVETNPF  115 (611)
T ss_pred             CChHHHHHHHHHHHh-------hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHhcccchhhcch
Confidence            567778888888775       4788899888888 6666788888999998887    77777777666621       


Q ss_pred             -------Hh---C---C-------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhcc---CCCCcc---cchhc
Q 005877          155 -------AE---G---G-------NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS---KDSPVI---EPIRI  208 (672)
Q Consensus       155 -------~~---~---~-------~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~---~~~~~~---~~~~l  208 (672)
                             ..   .   +       ....++.-|.+|..+++.++|...|.+++..+...+..-   ..+..+   +...+
T Consensus       116 ~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~l  195 (611)
T KOG1173|consen  116 SYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFEL  195 (611)
T ss_pred             hhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHH
Confidence                   11   0   0       112334456677778999999999999987765433210   000000   00111


Q ss_pred             ccCchhhhhHhhhccCChHHHHHHHHH-------------------HHH-cCCHHHHHHHHHHHHhcCCCcccCHHHHHH
Q 005877          209 HNGAEENKGALRKSRGEDDEAFQILEY-------------------QAQ-KGNAGAMYKIGLFYYFGLRGLRRDRTKALM  268 (672)
Q Consensus       209 ~~~~~~~~~~~~~~~g~~~~Ai~~~~~-------------------aa~-~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~  268 (672)
                      ...    +... ...+...+-++.+=+                   ... ..+++.....+..++.+.     ++.+-.+
T Consensus       196 l~~----l~~a-~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c-----~f~~c~k  265 (611)
T KOG1173|consen  196 LES----LDLA-MLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGC-----RFKECLK  265 (611)
T ss_pred             Hhc----ccHH-hhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcC-----hHHHHHH
Confidence            000    0000 011111111111111                   111 137788888888888884     8999888


Q ss_pred             HHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHcCCCCCcCCHHHHH
Q 005877          269 WFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR-----QQLYSAYNGIGYLYVKGYGVEKKNYTKAK  340 (672)
Q Consensus       269 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-----~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~  340 (672)
                      ......+.+   .+-.-..+|.++..     ++.   .++|.-+.+     +..+.+++.+|..|..     .+++.+|.
T Consensus       266 it~~lle~dpfh~~~~~~~ia~l~el-----~~~---n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~-----i~k~seAR  332 (611)
T KOG1173|consen  266 ITEELLEKDPFHLPCLPLHIACLYEL-----GKS---NKLFLLSHKLVDLYPSKALSWFAVGCYYLM-----IGKYSEAR  332 (611)
T ss_pred             HhHHHHhhCCCCcchHHHHHHHHHHh-----ccc---chHHHHHHHHHHhCCCCCcchhhHHHHHHH-----hcCcHHHH
Confidence            888888753   34455778877765     322   334444432     2467788999998885     46899999


Q ss_pred             HHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHH
Q 005877          341 EYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYK  416 (672)
Q Consensus       341 ~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~  416 (672)
                      .||.++...+  ..+++...|..|..    ++..++|+..|..|.+  .|.-.-...+|.=|..    .++.+.|..+|.
T Consensus       333 ry~SKat~lD~~fgpaWl~fghsfa~----e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~----t~n~kLAe~Ff~  404 (611)
T KOG1173|consen  333 RYFSKATTLDPTFGPAWLAFGHSFAG----EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR----TNNLKLAEKFFK  404 (611)
T ss_pred             HHHHHHhhcCccccHHHHHHhHHhhh----cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH----hccHHHHHHHHH
Confidence            9999998876  67888999999987    8999999999999988  4555556788887776    899999999999


Q ss_pred             HHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-----CHHHHHHHHHHHHHhCCCCcccCCCCCCCch
Q 005877          417 LVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL----G-----YEVAQSNAAWILDKYGEGSMCMGESGFCTDA  485 (672)
Q Consensus       417 ~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~----g-----~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~  485 (672)
                      +|....|  |-.+..+|.+.|..+.+.+|..+|+.+++.    +     ..+-++|||.++.+                .
T Consensus       405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk----------------l  468 (611)
T KOG1173|consen  405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK----------------L  468 (611)
T ss_pred             HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH----------------H
Confidence            9999885  556788999999999999999999999732    2     33458999999998                8


Q ss_pred             HhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHc
Q 005877          486 ERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEH  552 (672)
Q Consensus       486 ~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~  552 (672)
                      +.+++|+.++++++.  +.+++++-.+|.+|.    ..|++++|+.+|.+|+-  +++..+---|+.+.+.
T Consensus       469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~----llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYH----LLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH----HhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            899999999998765  467888899999999    99999999999999965  4565555555655443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.57  E-value=9.7e-13  Score=134.19  Aligned_cols=225  Identities=16%  Similarity=0.047  Sum_probs=147.9

Q ss_pred             CHHHHHHHHHHHHhC------CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccC
Q 005877          335 NYTKAKEYFEKAADN------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKK  406 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~  406 (672)
                      ..+.++..+.++++.      +.+..++.+|.+|..    .|++++|+..|+++++.  +++.+++++|.++..    .+
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~----~g  112 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQ----AG  112 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CC
Confidence            445666666666642      235667777887777    77788888888877764  467777888877776    77


Q ss_pred             CHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhCCCCcccCCCCCCC
Q 005877          407 NLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAW-ILDKYGEGSMCMGESGFCT  483 (672)
Q Consensus       407 ~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~-~l~~~~~~~~~~~~~~~~~  483 (672)
                      ++++|+..|+++++..|  ..++.++|.+++..|++++|+..++++++.........+.. +...               
T Consensus       113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~---------------  177 (296)
T PRK11189        113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES---------------  177 (296)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc---------------
Confidence            88888888888877764  45677778877778888888888888876653322211111 1111               


Q ss_pred             chHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----h--cCCHHHHHHHHHHHHcCCCCC
Q 005877          484 DAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHAR----S--QSNAQAMFNLGYMHEHGQGLP  557 (672)
Q Consensus       484 ~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~----~--~~~~~a~~~Lg~~y~~g~g~~  557 (672)
                       .+++++|+..+++++...+++.+. .+.++..-  ...+..++.+.+.++.    +  ...++++++||.+|..    .
T Consensus       178 -~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~l--g~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~----~  249 (296)
T PRK11189        178 -KLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYL--GKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLS----L  249 (296)
T ss_pred             -cCCHHHHHHHHHHHHhhCCccccH-HHHHHHHc--cCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH----C
Confidence             346788888887766554444433 24433310  1122233444444332    2  2456899999999998    8


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 005877          558 LDLHLAKRYYDQALEVDPAAKLPVTLALTSLWI  590 (672)
Q Consensus       558 ~d~~~A~~~~~~A~~~~~~~~~~~~~~~~~~~~  590 (672)
                      |++++|+.+|++|++.+|...+....+++.+..
T Consensus       250 g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~  282 (296)
T PRK11189        250 GDLDEAAALFKLALANNVYNFVEHRYALLELAL  282 (296)
T ss_pred             CCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            999999999999999998777666566555543

>PRK12370 invasion protein regulator; Provisional

Probab=99.57  E-value=1.9e-12  Score=143.97  Aligned_cols=243  Identities=13%  Similarity=-0.003  Sum_probs=137.0

Q ss_pred             cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcc
Q 005877          141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLR---------QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIH  209 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~---------~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~  209 (672)
                      ..+.++|+.+|++|++  ++++.++..||.+|..         .+++++|+..++++++                     
T Consensus       274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~---------------------  332 (553)
T PRK12370        274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE---------------------  332 (553)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh---------------------
Confidence            4455666666666654  4566666666665542         2346666666666654                     


Q ss_pred             cCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 005877          210 NGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGE  287 (672)
Q Consensus       210 ~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~  287 (672)
                                                 .+++++.++..+|.++...     +++++|+..|+++++  ++++.+++.+|.
T Consensus       333 ---------------------------ldP~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  380 (553)
T PRK12370        333 ---------------------------LDHNNPQALGLLGLINTIH-----SEYIVGSLLFKQANLLSPISADIKYYYGW  380 (553)
T ss_pred             ---------------------------cCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                                       2344566666666666555     366666666666655  345666666666


Q ss_pred             HHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Q 005877          288 IYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---EEAGGHYNLGVMY  362 (672)
Q Consensus       288 ~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y  362 (672)
                      ++..    .|++++|+.+++++++.+  ++.+...++.++..     .+++++|+.+++++++.   +++.++.++|.+|
T Consensus       381 ~l~~----~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-----~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l  451 (553)
T PRK12370        381 NLFM----AGQLEEALQTINECLKLDPTRAAAGITKLWITYY-----HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL  451 (553)
T ss_pred             HHHH----CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-----ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence            6666    666666666666666543  33333333333332     24666676666666543   3555666666666


Q ss_pred             HcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcC
Q 005877          363 YKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKG  438 (672)
Q Consensus       363 ~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g  438 (672)
                      ..    .|++++|...+++....  .+..+...++..|..    .+  ++|...+++..+..  .+........++--.|
T Consensus       452 ~~----~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g  521 (553)
T PRK12370        452 SL----KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ----NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHG  521 (553)
T ss_pred             Hh----CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc----cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHh
Confidence            66    66677777766665432  234455555555543    23  35555555544332  1112223555566667


Q ss_pred             CHHHHHHHHHHHHHcCCH
Q 005877          439 DVGKAFLLYSRMAELGYE  456 (672)
Q Consensus       439 ~~~~A~~~~~~a~~~g~~  456 (672)
                      +.+.+..| +++.+.++.
T Consensus       522 ~~~~~~~~-~~~~~~~~~  538 (553)
T PRK12370        522 EAIAEKMW-NKFKNEDNI  538 (553)
T ss_pred             hhHHHHHH-HHhhccchH
Confidence            77777777 666655543

>PRK12370 invasion protein regulator; Provisional

Probab=99.57  E-value=1.2e-12  Score=145.47  Aligned_cols=173  Identities=13%  Similarity=0.061  Sum_probs=142.9

Q ss_pred             cCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCH
Q 005877          261 RDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNY  336 (672)
Q Consensus       261 ~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~  336 (672)
                      +++++|+..++++++  ++++.++..+|.++..    .+++++|+..|+++++.  +++.+++.+|.++..     .|++
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-----~G~~  388 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTI----HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-----AGQL  388 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCCH
Confidence            579999999999987  4789999999999998    89999999999999876  478899999999986     6799


Q ss_pred             HHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCccCCHHHH
Q 005877          337 TKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA---GHQKAFYQLAKMFHTGVGLKKNLHMA  411 (672)
Q Consensus       337 ~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~L~~~y~~g~g~~~~~~~A  411 (672)
                      ++|+.+++++++.+  ++.+.+.++.++..    .+++++|+.+++++++.   +++.++.++|.++..    .|++++|
T Consensus       389 ~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~----~G~~~eA  460 (553)
T PRK12370        389 EEALQTINECLKLDPTRAAAGITKLWITYY----HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL----KGKHELA  460 (553)
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHh----ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh----CCCHHHH
Confidence            99999999999874  55566666666666    67899999999998763   467888999999987    8999999


Q ss_pred             HHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877          412 TALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE  452 (672)
Q Consensus       412 ~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~  452 (672)
                      ...+++.....+  ..+...++..+...|+  +|...+++..+
T Consensus       461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~  501 (553)
T PRK12370        461 RKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE  501 (553)
T ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence            999999776654  3456667777777774  66666666543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.57  E-value=6.2e-12  Score=135.97  Aligned_cols=305  Identities=15%  Similarity=0.134  Sum_probs=237.5

Q ss_pred             hhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877          105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV  180 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~  180 (672)
                      .|++++|..++.+.+  ++.++.+++.||.+|..    .||..++...+..|+.  +++.+-+..++..-.++|+++.|+
T Consensus       152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq----rGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ----RGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence            699999999999955  55789999999999999    9999999999999987  688899999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCC-------HHHHHHHHHHHH
Q 005877          181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN-------AGAMYKIGLFYY  253 (672)
Q Consensus       181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~-------~~a~~~Lg~~y~  253 (672)
                      -+|.+|++..|..+.                .......++.+.|+...|...|.++.....       .+.-...+..+.
T Consensus       228 ~cy~rAI~~~p~n~~----------------~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~  291 (895)
T KOG2076|consen  228 YCYSRAIQANPSNWE----------------LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI  291 (895)
T ss_pred             HHHHHHHhcCCcchH----------------HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence            999999998765431                223477888999999999999999877643       222333355555


Q ss_pred             hcCCCcccCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH------------------
Q 005877          254 FGLRGLRRDRTKALMWFSKAADKGE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAAR------------------  311 (672)
Q Consensus       254 ~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------------------  311 (672)
                      ..     .+.+.|++.++.++..+.    -.-+..++.+|..    ...+++|......-..                  
T Consensus       292 ~~-----~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~----~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~  362 (895)
T KOG2076|consen  292 TH-----NERERAAKALEGALSKEKDEASLEDLNILAELFLK----NKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE  362 (895)
T ss_pred             Hh-----hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH----hHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence            54     366999999999988422    2345566777766    6677777766655443                  


Q ss_pred             -------cC-----CHHH-HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHcCCCchhcHHHH
Q 005877          312 -------QQ-----LYSA-YNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD---NEEAGGHYNLGVMYYKGIGVKRDVKLA  375 (672)
Q Consensus       312 -------~~-----~~~a-~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~---~~~~~a~~~Lg~~y~~g~g~~~~~~~A  375 (672)
                             .+     +... ...++.+.+.     ..+..+++..|..--.   .++++-++.++..|.+    .+.+.+|
T Consensus       363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~-----~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~----~~~~~~A  433 (895)
T KOG2076|consen  363 EPNALCEVGKELSYDLRVIRLMICLVHLK-----ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN----IGKYKEA  433 (895)
T ss_pred             cccccccCCCCCCccchhHhHhhhhhccc-----ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh----cccHHHH
Confidence                   01     1122 4445555543     2355555555433221   2467889999999999    9999999


Q ss_pred             HHHHHHHHHc---CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877          376 CKYFLVAANA---GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRM  450 (672)
Q Consensus       376 ~~~~~~A~~~---~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a  450 (672)
                      +.+|......   +....|+.+|.||..    .+.+++|+.+|++++...|  .++...|+.++...|++++|.+.++..
T Consensus       434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~----l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~  509 (895)
T KOG2076|consen  434 LRLLSPITNREGYQNAFVWYKLARCYME----LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQI  509 (895)
T ss_pred             HHHHHHHhcCccccchhhhHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence            9999998874   356789999999998    9999999999999998875  578999999999999999999999885


Q ss_pred             H
Q 005877          451 A  451 (672)
Q Consensus       451 ~  451 (672)
                      .
T Consensus       510 ~  510 (895)
T KOG2076|consen  510 I  510 (895)
T ss_pred             c
Confidence            4

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.54  E-value=5.2e-14  Score=143.10  Aligned_cols=250  Identities=18%  Similarity=0.131  Sum_probs=64.7

Q ss_pred             HHHHHHHhhcCCcccCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 005877          127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAE----GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV  202 (672)
Q Consensus       127 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~----~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~  202 (672)
                      .+.++.++..    .+++++|+..+++.+.    ++++..+..+|.+....+++++|+..|++++..++...        
T Consensus        11 ~l~~A~~~~~----~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~--------   78 (280)
T PF13429_consen   11 ALRLARLLYQ----RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP--------   78 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------
Confidence            3455666666    7777777777755432    35666777777777777777777777777765432210        


Q ss_pred             ccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----C
Q 005877          203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----G  277 (672)
Q Consensus       203 ~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~  277 (672)
                              .....+..+ ...+++++|+.++++.-+. +++.....+..++...     ++++++...++++...    .
T Consensus        79 --------~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~~~~l~~~~~~~~~~~  144 (280)
T PF13429_consen   79 --------QDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRL-----GDYDEAEELLEKLEELPAAPD  144 (280)
T ss_dssp             ------------------------------------------------H-HHHT-----T-HHHHHHHHHHHHH-T---T
T ss_pred             --------ccccccccc-cccccccccccccccccccccccchhhHHHHHHHHH-----hHHHHHHHHHHHHHhccCCCC
Confidence                    011112222 3445555555555544332 3444444444555444     3555555555554331    3


Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHH
Q 005877          278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG  353 (672)
Q Consensus       278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~  353 (672)
                      ++..+..+|.++..    .|+.++|+..|+++++.  +++.+...++.++..     .|+++++...++...+.  .++.
T Consensus       145 ~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-----~~~~~~~~~~l~~~~~~~~~~~~  215 (280)
T PF13429_consen  145 SARFWLALAEIYEQ----LGDPDKALRDYRKALELDPDDPDARNALAWLLID-----MGDYDEAREALKRLLKAAPDDPD  215 (280)
T ss_dssp             -HHHHHHHHHHHHH----CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHH-HTSCC
T ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCChHHHHHHHHHHHHHCcCHHH
Confidence            44555555555555    55556666666665543  345555555555542     34555544444443332  3444


Q ss_pred             HHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHH
Q 005877          354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA  419 (672)
Q Consensus       354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~  419 (672)
                      .+..+|.+|..    .+++++|+.+|+++.+  ++++..+..+|.++..    .|+.++|..+++++.
T Consensus       216 ~~~~la~~~~~----lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~----~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  216 LWDALAAAYLQ----LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ----AGRKDEALRLRRQAL  275 (280)
T ss_dssp             HCHHHHHHHHH----HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred             HHHHHHHHhcc----cccccccccccccccccccccccccccccccccc----ccccccccccccccc
Confidence            45555555555    5555555555555544  3345555555555554    555555555555443

>TIGR00540 hemY_coli hemY protein

Probab=99.54  E-value=2.7e-11  Score=129.76  Aligned_cols=283  Identities=11%  Similarity=0.024  Sum_probs=162.5

Q ss_pred             hhHhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-CCH--HHHHHHHHHHH
Q 005877          216 KGALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEP--QSMEFLGEIYA  290 (672)
Q Consensus       216 ~~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~--~a~~~Lg~~y~  290 (672)
                      .|.+....|+++.|.+.+.++.+..  ....+...|.+....     +++++|.++|+++.+. +++  .+....+.++.
T Consensus        90 ~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~-----g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l  164 (409)
T TIGR00540        90 EALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQR-----GDEARANQHLEEAAELAGNDNILVEIARTRILL  164 (409)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence            3455556777777777777766552  344455556666655     3777777777776653 222  23334466666


Q ss_pred             cCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHH----HHHHHH
Q 005877          291 RGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHY----NLGVMY  362 (672)
Q Consensus       291 ~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~----~Lg~~y  362 (672)
                      .    .+++++|...+++..+.  +++.++..++.+|..     .+|+++|++.+.+..+.+  ++....    ....-.
T Consensus       165 ~----~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~-----~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~  235 (409)
T TIGR00540       165 A----QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR-----SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL  235 (409)
T ss_pred             H----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            6    67777777777776654  366667777777764     457777777777666552  111111    111111


Q ss_pred             HcCCCchhcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 005877          363 YKGIGVKRDVKLACKYFLVAANA------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYL  436 (672)
Q Consensus       363 ~~g~g~~~~~~~A~~~~~~A~~~------~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~  436 (672)
                      ..    .+..+++.+.+.++.+.      .++.....++..+..    .+++++|...++++++..|.+.          
T Consensus       236 l~----~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~~~l~~~l~~~pd~~----------  297 (409)
T TIGR00540       236 LD----EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQEIIFDGLKKLGDDR----------  297 (409)
T ss_pred             HH----HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcc----------
Confidence            11    11222222233332221      234444444444444    4445555555555444433221          


Q ss_pred             cCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCH--HHHHHHH
Q 005877          437 KGDVGKAFLLYSRMAELGYEVAQ-SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNE--HAALLIG  511 (672)
Q Consensus       437 ~g~~~~A~~~~~~a~~~g~~~a~-~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~--~a~~~lG  511 (672)
                                          ... ..+-.+.               ..+.++..++++.++++.  .++++  .....+|
T Consensus       298 --------------------~~~~~~l~~~~---------------~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg  342 (409)
T TIGR00540       298 --------------------AISLPLCLPIP---------------RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALG  342 (409)
T ss_pred             --------------------cchhHHHHHhh---------------hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence                                000 0000000               001234455666666543  45677  6677999


Q ss_pred             HHHHhCCCCCCCHHHHHHHHHH--HHh-cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877          512 DAYYYGRGTQRDYERAAEAYMH--ARS-QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV  573 (672)
Q Consensus       512 ~~y~~g~g~~~d~~~A~~~~~~--A~~-~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  573 (672)
                      ++++    ..+++++|.++|++  +.+ ..++....+||.++..    .|+.++|.++|++++..
T Consensus       343 ~l~~----~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~----~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       343 QLLM----KHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ----AGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHH----HcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            9999    89999999999995  555 3566667799999988    89999999999998664

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.54  E-value=1.6e-13  Score=131.65  Aligned_cols=222  Identities=16%  Similarity=0.117  Sum_probs=166.7

Q ss_pred             HHHHHHhhcCCcccCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccch
Q 005877          128 SVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPI  206 (672)
Q Consensus       128 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~  206 (672)
                      ..+|.+|..    .+-+.+|.+.++.+.. ..+++....|..+|.+.+.++.|+..|.+.++..                
T Consensus       227 ~Q~gkCylr----Lgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f----------------  286 (478)
T KOG1129|consen  227 QQMGKCYLR----LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF----------------  286 (478)
T ss_pred             HHHHHHHHH----hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC----------------
Confidence            467777777    6777777777777776 3677777777777777777777777777765522                


Q ss_pred             hcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHH
Q 005877          207 RIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEF  284 (672)
Q Consensus       207 ~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~  284 (672)
                                                      +++.......++++...     ++++.|.++|+.+++.  .+.++.-.
T Consensus       287 --------------------------------P~~VT~l~g~ARi~eam-----~~~~~a~~lYk~vlk~~~~nvEaiAc  329 (478)
T KOG1129|consen  287 --------------------------------PFDVTYLLGQARIHEAM-----EQQEDALQLYKLVLKLHPINVEAIAC  329 (478)
T ss_pred             --------------------------------CchhhhhhhhHHHHHHH-----HhHHHHHHHHHHHHhcCCccceeeee
Confidence                                            34566666677777666     4888888888888775  45666666


Q ss_pred             HHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-----CCHHHHHH
Q 005877          285 LGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----EEAGGHYN  357 (672)
Q Consensus       285 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-----~~~~a~~~  357 (672)
                      +|.-|..    .++++-|+.||++.++.|  +++...++|.+++.+     +.++-++..|++|...     .-++.+||
T Consensus       330 ia~~yfY----~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya-----qQ~D~~L~sf~RAlstat~~~~aaDvWYN  400 (478)
T KOG1129|consen  330 IAVGYFY----DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA-----QQIDLVLPSFQRALSTATQPGQAADVWYN  400 (478)
T ss_pred             eeecccc----CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh-----cchhhhHHHHHHHHhhccCcchhhhhhhc
Confidence            7777776    778888888888888876  778888888888862     3788888888888654     24678888


Q ss_pred             HHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC
Q 005877          358 LGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP  423 (672)
Q Consensus       358 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~  423 (672)
                      ||.+...    .||+..|..+|+.++..  .|.++++|||.+-..    .|+.+.|..++..+....|
T Consensus       401 lg~vaV~----iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r----~G~i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  401 LGFVAVT----IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR----SGDILGARSLLNAAKSVMP  460 (478)
T ss_pred             cceeEEe----ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh----cCchHHHHHHHHHhhhhCc
Confidence            8888777    78888888888888764  477888888887776    7888888888887766554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.53  E-value=5e-14  Score=143.20  Aligned_cols=247  Identities=20%  Similarity=0.132  Sum_probs=92.6

Q ss_pred             HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHH
Q 005877          283 EFLGEIYARGAGVERNYTKALEWLTHAARQ----QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHY  356 (672)
Q Consensus       283 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~  356 (672)
                      +.++.++..    .+++++|++.+++.+..    +++..+..+|.+...     .+++++|+..|++.+..+  ++..+.
T Consensus        12 l~~A~~~~~----~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~-----~~~~~~A~~ay~~l~~~~~~~~~~~~   82 (280)
T PF13429_consen   12 LRLARLLYQ----RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS-----LGDYDEAIEAYEKLLASDKANPQDYE   82 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccc----cccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccc
Confidence            355666666    77778888877654432    345555556666553     457778888888777654  455555


Q ss_pred             HHHHHHHcCCCchhcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----ChhHHHHHH
Q 005877          357 NLGVMYYKGIGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----PWSSLSRWA  431 (672)
Q Consensus       357 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg  431 (672)
                      .++.+ ..    .+++++|+..++++.+.. ++..+.....++..    .++++++...++++.+..    ++..+..+|
T Consensus        83 ~l~~l-~~----~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a  153 (280)
T PF13429_consen   83 RLIQL-LQ----DGDPEEALKLAEKAYERDGDPRYLLSALQLYYR----LGDYDEAEELLEKLEELPAAPDSARFWLALA  153 (280)
T ss_dssp             ----------------------------------------H-HHH----TT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred             ccccc-cc----cccccccccccccccccccccchhhHHHHHHHH----HhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence            66666 34    577888888777775533 44444444555555    678888888888866543    334566778


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHH---HHHhCCCHHH
Q 005877          432 LESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW---QASEQGNEHA  506 (672)
Q Consensus       432 ~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~---~a~~~~~~~a  506 (672)
                      .++...|+.++|+..|+++++.  +++.+...+++++..                .++.+++...++   +.. +.++..
T Consensus       154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~----------------~~~~~~~~~~l~~~~~~~-~~~~~~  216 (280)
T PF13429_consen  154 EIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID----------------MGDYDEAREALKRLLKAA-PDDPDL  216 (280)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----------------TCHHHHHHHHHHHHHHH--HTSCCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------------CCChHHHHHHHHHHHHHC-cCHHHH
Confidence            8888888888888888888554  567778888888765                455665544444   333 456667


Q ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877          507 ALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE  572 (672)
Q Consensus       507 ~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  572 (672)
                      +..+|.+|.    ..+++++|+.+|+++.+  ++|+..+.++|.++..    .|+.++|.++++++.+
T Consensus       217 ~~~la~~~~----~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~----~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  217 WDALAAAYL----QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ----AGRKDEALRLRRQALR  276 (280)
T ss_dssp             CHHHHHHHH----HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------------
T ss_pred             HHHHHHHhc----ccccccccccccccccccccccccccccccccccc----cccccccccccccccc
Confidence            778899998    78899999999999877  4789999999999887    8899999999888865

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.49  E-value=1.8e-10  Score=122.72  Aligned_cols=286  Identities=10%  Similarity=0.029  Sum_probs=165.4

Q ss_pred             hHhhhccCChHHHHHHHHHHHHcC-CHHHHHHHHHHH-HhcCCCcccCHHHHHHHHHHHHHcC--CHHHH-HHHHHHHHc
Q 005877          217 GALRKSRGEDDEAFQILEYQAQKG-NAGAMYKIGLFY-YFGLRGLRRDRTKALMWFSKAADKG--EPQSM-EFLGEIYAR  291 (672)
Q Consensus       217 ~~~~~~~g~~~~Ai~~~~~aa~~~-~~~a~~~Lg~~y-~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~-~~Lg~~y~~  291 (672)
                      |.+....|++++|.+.+.+..+.. +|..++.++-.. ...     +++++|.++|+++.+..  +..+. ...+.++..
T Consensus        91 gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~-----g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~  165 (398)
T PRK10747         91 ALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQR-----GDEARANQHLERAAELADNDQLPVEITRVRIQLA  165 (398)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            344445677777777777665542 444444443333 333     37777777777776632  22222 233667766


Q ss_pred             CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCC--HHHHHH-HHHHHHcCC
Q 005877          292 GAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE--AGGHYN-LGVMYYKGI  366 (672)
Q Consensus       292 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~--~~a~~~-Lg~~y~~g~  366 (672)
                          .+++++|+..+++..+.  +++.++..++.+|..     .|++++|+..+.+..+...  +..... .+..|    
T Consensus       166 ----~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-----~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~----  232 (398)
T PRK10747        166 ----RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-----TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAW----  232 (398)
T ss_pred             ----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----
Confidence                77777777777776654  366777777777764     4577777777766655431  111110 00111    


Q ss_pred             CchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHhcCCHHHHH
Q 005877          367 GVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE--RGPWSSLSRWALESYLKGDVGKAF  444 (672)
Q Consensus       367 g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~g~~~~A~  444 (672)
                                               ..+......    ..+-+....+++...+  ..++.....++..+...|+.++|.
T Consensus       233 -------------------------~~l~~~~~~----~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~  283 (398)
T PRK10747        233 -------------------------IGLMDQAMA----DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ  283 (398)
T ss_pred             -------------------------HHHHHHHHH----hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence                                     000000000    1122222222222211  123444555555555566666666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH--HhCCCHHHHHHHHHHHHhCCCCCC
Q 005877          445 LLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA--SEQGNEHAALLIGDAYYYGRGTQR  522 (672)
Q Consensus       445 ~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lG~~y~~g~g~~~  522 (672)
                      ..++++++.....   .+..++...              ..++.+++++..++.  ..++++..++.+|.++.    ..+
T Consensus       284 ~~L~~~l~~~~~~---~l~~l~~~l--------------~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~----~~~  342 (398)
T PRK10747        284 QIILDGLKRQYDE---RLVLLIPRL--------------KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM----KHG  342 (398)
T ss_pred             HHHHHHHhcCCCH---HHHHHHhhc--------------cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH----HCC
Confidence            6666665532111   112222110              023556666666643  45677888999999999    899


Q ss_pred             CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877          523 DYERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD  574 (672)
Q Consensus       523 d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  574 (672)
                      ++++|.++|+++++. .+...+..|+.+++.    .|+.++|.++|++++.+-
T Consensus       343 ~~~~A~~~le~al~~~P~~~~~~~La~~~~~----~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        343 EWQEASLAFRAALKQRPDAYDYAWLADALDR----LHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhh
Confidence            999999999999886 556666789999998    899999999999998763

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.49  E-value=1.1e-11  Score=121.54  Aligned_cols=191  Identities=17%  Similarity=0.149  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL  427 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~  427 (672)
                      +.+++++|.++..    .+++++|+.+++++++.  .+..++..+|.++..    .+++++|+.+|+++++..+  ...+
T Consensus        31 ~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~  102 (234)
T TIGR02521        31 AKIRVQLALGYLE----QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQ----LGELEKAEDSFRRALTLNPNNGDVL  102 (234)
T ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHH
Confidence            3445555555555    55555555555555442  234455555555554    5555555555555555442  2344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--C
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAEL----GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--Q  501 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~~----g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~  501 (672)
                      ..+|..+...|++++|+.+++++++.    .......++|.++..                .+++++|..+++++..  +
T Consensus       103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~~~~~~~  166 (234)
T TIGR02521       103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----------------AGDFDKAEKYLTRALQIDP  166 (234)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCc
Confidence            55555555555555555555555442    123344455555544                4455566666665443  3


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877          502 GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD  574 (672)
Q Consensus       502 ~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  574 (672)
                      +++.+++.+|.+++    ..+++++|..+++++++.  .++..+..++.++..    .++.++|..+.+.+....
T Consensus       167 ~~~~~~~~la~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       167 QRPESLLELAELYY----LRGQYKDARAYLERYQQTYNQTAESLWLGIRIARA----LGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             CChHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhhC
Confidence            44667788888888    788899999988888763  567777777777765    788888888887766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00540 hemY_coli hemY protein

Probab=99.48  E-value=6.5e-11  Score=126.79  Aligned_cols=285  Identities=13%  Similarity=-0.008  Sum_probs=201.0

Q ss_pred             HHHHHHhhcCCcccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccc
Q 005877          128 SVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP  205 (672)
Q Consensus       128 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~  205 (672)
                      ..-|.+-..    .+|++.|.+...++.+.  +...++...|.+....|++++|..+++++.+..+...       .   
T Consensus        88 ~~~glla~~----~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-------l---  153 (409)
T TIGR00540        88 TEEALLKLA----EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN-------I---  153 (409)
T ss_pred             HHHHHHHHh----CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-------h---
Confidence            445555555    88999999998888773  4456677778888888999999999988876432210       0   


Q ss_pred             hhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC--CHHH
Q 005877          206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQS  281 (672)
Q Consensus       206 ~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a  281 (672)
                           ......+.++...|++++|...++...+.  .++.+...++.++...     +|+++|.+.+++..+.+  ++..
T Consensus       154 -----~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~-----~d~~~a~~~l~~l~k~~~~~~~~  223 (409)
T TIGR00540       154 -----LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS-----GAWQALDDIIDNMAKAGLFDDEE  223 (409)
T ss_pred             -----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHcCCCCHHH
Confidence                 01112466777888999999998887554  6899999999999988     49999999999988753  2222


Q ss_pred             HH----HHHHHHHcCCCCcCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-
Q 005877          282 ME----FLGEIYARGAGVERNYTKALEWLTHAARQ------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-  350 (672)
Q Consensus       282 ~~----~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-  350 (672)
                      ..    ....-...    .+..+++...+.++.+.      +++.....++..+..     .|++++|.+.++++++.. 
T Consensus       224 ~~~l~~~a~~~~l~----~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~-----~g~~~~A~~~l~~~l~~~p  294 (409)
T TIGR00540       224 FADLEQKAEIGLLD----EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID-----CDDHDSAQEIIFDGLKKLG  294 (409)
T ss_pred             HHHHHHHHHHHHHH----HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH-----CCChHHHHHHHHHHHhhCC
Confidence            21    11111111    22333344455544432      377888888888875     579999999999998863 


Q ss_pred             -CHHH--HHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCH--HHHHHHHHHHHcCCCccCCHHHHHHHHHH--HHHc
Q 005877          351 -EAGG--HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ--KAFYQLAKMFHTGVGLKKNLHMATALYKL--VAER  421 (672)
Q Consensus       351 -~~~a--~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~--~a~~~L~~~y~~g~g~~~~~~~A~~~~~~--a~~~  421 (672)
                       +...  ..........    .++..++.+.++++.+.  +++  .....+|.++..    .+++++|.++|++  +.+.
T Consensus       295 d~~~~~~~~l~~~~~l~----~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~----~~~~~~A~~~le~a~a~~~  366 (409)
T TIGR00540       295 DDRAISLPLCLPIPRLK----PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK----HGEFIEAADAFKNVAACKE  366 (409)
T ss_pred             CcccchhHHHHHhhhcC----CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----cccHHHHHHHHHHhHHhhc
Confidence             2221  1222233333    56788899999888764  567  667789999987    8999999999994  6555


Q ss_pred             CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          422 GP-WSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       422 ~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      .| +..+..+|.++...|+.++|..+|++++.+
T Consensus       367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       367 QLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            53 455778999999999999999999998664

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.48  E-value=1.6e-10  Score=123.13  Aligned_cols=212  Identities=8%  Similarity=0.009  Sum_probs=119.5

Q ss_pred             hHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC--CHH--------HHHH
Q 005877          217 GALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQ--------SMEF  284 (672)
Q Consensus       217 ~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------a~~~  284 (672)
                      +.++...|++++|+..+++..+.  +++.+...++.+|...     +|+++|++.+.+..+..  ++.        ++..
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~-----gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~  234 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT-----GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG  234 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            34445555555555555554333  4667777777777666     37777776666665532  111        1111


Q ss_pred             HHHHHHcCCCCcCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 005877          285 LGEIYARGAGVERNYTKALEWLTHAA--RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVM  361 (672)
Q Consensus       285 Lg~~y~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~  361 (672)
                      +......    ..+.+...++++...  ..+++.+...++..+..     .|+.++|...++++.+.. ++......+.+
T Consensus       235 l~~~~~~----~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~-----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l  305 (398)
T PRK10747        235 LMDQAMA----DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE-----CDDHDTAQQIILDGLKRQYDERLVLLIPRL  305 (398)
T ss_pred             HHHHHHH----hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhc
Confidence            1111111    122233333333221  13466666677776664     457777777777776643 33222222222


Q ss_pred             HHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh-HHHHHHHHHHhcC
Q 005877          362 YYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS-SLSRWALESYLKG  438 (672)
Q Consensus       362 y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~-a~~~lg~~~~~~g  438 (672)
                        .    .++.+++++..++..+  ++++.....+|.++..    .+++++|.++|+++++..|.. .+..++.++...|
T Consensus       306 --~----~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~----~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g  375 (398)
T PRK10747        306 --K----TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK----HGEWQEASLAFRAALKQRPDAYDYAWLADALDRLH  375 (398)
T ss_pred             --c----CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence              2    3566777777766655  3456667777777776    677777777777777776543 3466777777777


Q ss_pred             CHHHHHHHHHHHHH
Q 005877          439 DVGKAFLLYSRMAE  452 (672)
Q Consensus       439 ~~~~A~~~~~~a~~  452 (672)
                      +.++|..+|++++.
T Consensus       376 ~~~~A~~~~~~~l~  389 (398)
T PRK10747        376 KPEEAAAMRRDGLM  389 (398)
T ss_pred             CHHHHHHHHHHHHh
Confidence            77777777777654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.48  E-value=1.8e-11  Score=124.81  Aligned_cols=213  Identities=16%  Similarity=0.147  Sum_probs=139.4

Q ss_pred             CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCc
Q 005877          262 DRTKALMWFSKAADK------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEK  333 (672)
Q Consensus       262 ~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~  333 (672)
                      ..+.++..+.+.+..      +.+..++.+|.+|..    .+++++|+..|+++++.  +++.+++.+|.++..     .
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-----~  111 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-----A  111 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----C
Confidence            445666666666642      235667888888887    78888888888888765  477788888888875     5


Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHH-HHHcCCCccCCHHH
Q 005877          334 KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAK-MFHTGVGLKKNLHM  410 (672)
Q Consensus       334 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~-~y~~g~g~~~~~~~  410 (672)
                      |++++|+..|+++++.  +++.++.++|.++..    .+++++|++.|+++++..+......+.. +...    .++.++
T Consensus       112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~  183 (296)
T PRK11189        112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQ  183 (296)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHH
Confidence            6888888888888765  467788888888877    7788888888888877553332222211 2222    567788


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHH
Q 005877          411 ATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQC  490 (672)
Q Consensus       411 A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~  490 (672)
                      |+..+++++...++..+. .+...+..|+..++ ..++.+.+.                                     
T Consensus       184 A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~-------------------------------------  224 (296)
T PRK11189        184 AKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLMERLKAG-------------------------------------  224 (296)
T ss_pred             HHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHHHHHhc-------------------------------------
Confidence            888887766554433222 34444445544332 122222111                                     


Q ss_pred             HHHHHHHH--HhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 005877          491 AHSLWWQA--SEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS  538 (672)
Q Consensus       491 A~~~~~~a--~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~  538 (672)
                          ++.+  ..+..+++++++|.+|.    ..+++++|+.+|++|++.+
T Consensus       225 ----~~~~~~l~~~~~ea~~~Lg~~~~----~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        225 ----ATDNTELAERLCETYFYLAKYYL----SLGDLDEAAALFKLALANN  266 (296)
T ss_pred             ----CCCcHHHHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC
Confidence                0000  12335678999999999    8999999999999998864

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.47  E-value=5.8e-13  Score=131.39  Aligned_cols=245  Identities=20%  Similarity=0.219  Sum_probs=176.8

Q ss_pred             cCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH--------hCCCHHHHHHHHHH
Q 005877          296 ERNYTKALEWLTHAARQQL------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA--------DNEEAGGHYNLGVM  361 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~--------~~~~~~a~~~Lg~~  361 (672)
                      .+++...+.+|+.|++-|-      ...+..||..|+.     .+||++|++|..--+        +.|.+.+.-|||..
T Consensus        30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfy-----L~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFY-----LKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhh-----HhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            6777777777777777651      2235567777765     347888887754321        12567777788887


Q ss_pred             HHcCCCchhcHHHHHHHHHHHH----HcC----CHHHHHHHHHHHHcC-C--C-------------ccCCHHHHHHHHHH
Q 005877          362 YYKGIGVKRDVKLACKYFLVAA----NAG----HQKAFYQLAKMFHTG-V--G-------------LKKNLHMATALYKL  417 (672)
Q Consensus       362 y~~g~g~~~~~~~A~~~~~~A~----~~~----~~~a~~~L~~~y~~g-~--g-------------~~~~~~~A~~~~~~  417 (672)
                      +.-    .|.+++|+.+..+-+    +.|    ...|+|+||.+|..- .  |             +...++.|+++|..
T Consensus       105 lKv----~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e  180 (639)
T KOG1130|consen  105 LKV----KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME  180 (639)
T ss_pred             hhh----hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence            766    788888887776643    233    457888888887541 1  1             23345677777777


Q ss_pred             HHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHHhCCCCcccCCCCC
Q 005877          418 VAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GY----EVAQSNAAWILDKYGEGSMCMGESGF  481 (672)
Q Consensus       418 a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~----g~----~~a~~nla~~l~~~~~~~~~~~~~~~  481 (672)
                      -++..    +    -.++-+||..||..|||+.|+...+.=++.    |+    -.|+.|+|.++.-             
T Consensus       181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif-------------  247 (639)
T KOG1130|consen  181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF-------------  247 (639)
T ss_pred             HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh-------------
Confidence            65543    2    235778999999999999999987765433    43    3567788887765             


Q ss_pred             CCchHhHHHHHHHHHH----HHhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----hc----CCHHHHHH
Q 005877          482 CTDAERHQCAHSLWWQ----ASEQGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHAR----SQ----SNAQAMFN  545 (672)
Q Consensus       482 ~~~~~~~~~A~~~~~~----a~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~----~~----~~~~a~~~  545 (672)
                         .++++.|+++|++    |++.++    +.+.|.||..|.    ..+++++||.|+.+=+    +.    +...+.+.
T Consensus       248 ---lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt----ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwS  320 (639)
T KOG1130|consen  248 ---LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT----LLKEVQKAITYHQRHLAIAQELEDRIGELRACWS  320 (639)
T ss_pred             ---hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence               6688999999985    567776    677899999999    8899999999998832    22    67899999


Q ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877          546 LGYMHEHGQGLPLDLHLAKRYYDQALEV  573 (672)
Q Consensus       546 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  573 (672)
                      ||..|-.    .++.++|+.|.++.++.
T Consensus       321 Lgna~~a----lg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  321 LGNAFNA----LGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHh----hhhHHHHHHHHHHHHHH
Confidence            9999876    78999999988887654

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=99.46  E-value=4e-12  Score=112.10  Aligned_cols=178  Identities=22%  Similarity=0.326  Sum_probs=156.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCC-CcCCHHHHHHHHHHHHHcCCHHH
Q 005877          240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGAG-VERNYTKALEWLTHAARQQLYSA  317 (672)
Q Consensus       240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g-~~~~~~~A~~~~~~a~~~~~~~a  317 (672)
                      ..|++...||..+    .|+.+|+++|...|++-.+. +.+.+.+.+|..+..|.| ..++...|+++|+.+.+.+++.+
T Consensus        32 K~Pe~C~lLgdYl----Egi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~a  107 (248)
T KOG4014|consen   32 KRPESCQLLGDYL----EGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQA  107 (248)
T ss_pred             CCchHHHHHHHHH----HHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHH
Confidence            5789999999877    46788999999999988774 689999999999998854 67899999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCcC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC----------C----------chhcHHHH
Q 005877          318 YNGIGYLYVKGYGVEKK--NYTKAKEYFEKAADNEEAGGHYNLGVMYYKGI----------G----------VKRDVKLA  375 (672)
Q Consensus       318 ~~~Lg~~y~~g~g~~~~--~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~----------g----------~~~~~~~A  375 (672)
                      ...+|.+...|.-....  |..+|.+|+.+|.+.++..+.++|..+|+.|.          |          +.+|.++|
T Consensus       108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka  187 (248)
T KOG4014|consen  108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKA  187 (248)
T ss_pred             HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHH
Confidence            99999999887443333  58899999999999999999999999999872          2          23799999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHc
Q 005877          376 CKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER  421 (672)
Q Consensus       376 ~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~  421 (672)
                      .++--+|.+.+++.+--|+.+||..|-|+.+|.++|..|=.+|.+.
T Consensus       188 ~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  188 LQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             HHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998888764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.46  E-value=3.2e-11  Score=118.29  Aligned_cols=190  Identities=20%  Similarity=0.152  Sum_probs=160.0

Q ss_pred             CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 005877          241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYS  316 (672)
Q Consensus       241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~  316 (672)
                      .+.+++.+|.++...     +++++|+++++++++.  .++.++..+|.+|..    .+++++|+.+|+++++.  .+..
T Consensus        30 ~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~  100 (234)
T TIGR02521        30 AAKIRVQLALGYLEQ-----GDLEVAKENLDKALEHDPDDYLAYLALALYYQQ----LGELEKAEDSFRRALTLNPNNGD  100 (234)
T ss_pred             HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHH
Confidence            467888899999887     4999999999998874  578889999999998    89999999999999875  4677


Q ss_pred             HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHH
Q 005877          317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA  390 (672)
Q Consensus       317 a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a  390 (672)
                      +...+|.++..     .|++++|+.+|+++++.    .....++++|.++..    .+++++|..+|.++++.  +++.+
T Consensus       101 ~~~~~~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~  171 (234)
T TIGR02521       101 VLNNYGTFLCQ-----QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDPQRPES  171 (234)
T ss_pred             HHHHHHHHHHH-----cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCChHH
Confidence            88899999985     57999999999999874    356788899999988    89999999999999875  35778


Q ss_pred             HHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877          391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE  452 (672)
Q Consensus       391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~  452 (672)
                      +..++.++..    .+++++|+.+++++++..+  +..+..++..+...|+.++|..+.+....
T Consensus       172 ~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       172 LLELAELYYL----RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            8999999987    8999999999999988753  44566778888889999999988776544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.44  E-value=1.2e-09  Score=118.49  Aligned_cols=275  Identities=14%  Similarity=0.114  Sum_probs=136.4

Q ss_pred             hhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 005877          216 KGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYAR  291 (672)
Q Consensus       216 ~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  291 (672)
                      +|.+|..+|+.+++...+-.++..  ++.+-+..++....+.     +++++|+-+|.+|++.  .+....+.-..+|.+
T Consensus       179 L~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~-----~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~  253 (895)
T KOG2076|consen  179 LGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL-----GNINQARYCYSRAIQANPSNWELIYERSSLYQK  253 (895)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc-----ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            444444444444444444443332  4555566666655555     2566666666666553  344555555556655


Q ss_pred             CCCCcCCHHHHHHHHHHHHHcCCH------HH-HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC----CHHHHHHHHH
Q 005877          292 GAGVERNYTKALEWLTHAARQQLY------SA-YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE----EAGGHYNLGV  360 (672)
Q Consensus       292 g~g~~~~~~~A~~~~~~a~~~~~~------~a-~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~  360 (672)
                          .|+...|+.-|.+.+....+      .. .......+..     .++.+.|++.++.+...+    .-+-.+-++.
T Consensus       254 ----~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~-----~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ae  324 (895)
T KOG2076|consen  254 ----TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT-----HNERERAAKALEGALSKEKDEASLEDLNILAE  324 (895)
T ss_pred             ----hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence                56666666666666554321      11 1111222221     123355666655555421    1122334444


Q ss_pred             HHHcCCCchhcHHHHHHHHHHHHH-------------------------cC-----CHHHHHHHHHHHHcCCCccCCHHH
Q 005877          361 MYYKGIGVKRDVKLACKYFLVAAN-------------------------AG-----HQKAFYQLAKMFHTGVGLKKNLHM  410 (672)
Q Consensus       361 ~y~~g~g~~~~~~~A~~~~~~A~~-------------------------~~-----~~~a~~~L~~~y~~g~g~~~~~~~  410 (672)
                      +++.    ...++++......-..                         .+     +... ..+..++..    .+..+.
T Consensus       325 l~l~----~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~----L~~~e~  395 (895)
T KOG2076|consen  325 LFLK----NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH----LKEREL  395 (895)
T ss_pred             HHHH----hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc----ccccch
Confidence            4444    4444444444333221                         00     0011 122222221    223333


Q ss_pred             HHHHHHHHHHcC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCcccCCCCCC
Q 005877          411 ATALYKLVAERG-----PWSSLSRWALESYLKGDVGKAFLLYSRMAEL---GYEVAQSNAAWILDKYGEGSMCMGESGFC  482 (672)
Q Consensus       411 A~~~~~~a~~~~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~---g~~~a~~nla~~l~~~~~~~~~~~~~~~~  482 (672)
                      .........+..     .++-+..++.++...|++..|+.+|......   ++...+..+|.+|..              
T Consensus       396 ~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~--------------  461 (895)
T KOG2076|consen  396 LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME--------------  461 (895)
T ss_pred             HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH--------------
Confidence            333333333333     2344666666777777777777777666543   244556666666665              


Q ss_pred             CchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005877          483 TDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMH  533 (672)
Q Consensus       483 ~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~  533 (672)
                        .+.+++|+..|++++  .+++.++.++|+.+|.    ..|+.++|.+.+++
T Consensus       462 --l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~----~~g~~EkalEtL~~  508 (895)
T KOG2076|consen  462 --LGEYEEAIEFYEKVLILAPDNLDARITLASLYQ----QLGNHEKALETLEQ  508 (895)
T ss_pred             --HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHH----hcCCHHHHHHHHhc
Confidence              566677777777654  3455777777777777    66777777766666

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.43  E-value=2.5e-11  Score=129.04  Aligned_cols=133  Identities=20%  Similarity=0.210  Sum_probs=83.7

Q ss_pred             HHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhh
Q 005877          126 ARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-------GNI---QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL  195 (672)
Q Consensus       126 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-------~~~---~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~  195 (672)
                      +...|+.+|..    .+++++|+.+++.|++.       .++   ..+..+|.+|...+++++|+..|++++++....+.
T Consensus       201 ~~~~La~~y~~----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G  276 (508)
T KOG1840|consen  201 TLRNLAEMYAV----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG  276 (508)
T ss_pred             HHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            44456666666    67777777777776653       232   33334677777777777777777776665433221


Q ss_pred             ccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 005877          196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD  275 (672)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~  275 (672)
                      .  .                                      ++.-+..+.+|+.+|...     +++++|..++++|++
T Consensus       277 ~--~--------------------------------------h~~va~~l~nLa~ly~~~-----GKf~EA~~~~e~Al~  311 (508)
T KOG1840|consen  277 E--D--------------------------------------HPAVAATLNNLAVLYYKQ-----GKFAEAEEYCERALE  311 (508)
T ss_pred             C--C--------------------------------------CHHHHHHHHHHHHHHhcc-----CChHHHHHHHHHHHH
Confidence            1  0                                      011245678888888777     488888888888876


Q ss_pred             c-------C---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877          276 K-------G---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR  311 (672)
Q Consensus       276 ~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  311 (672)
                      .       .   -+..+..++.++..    .+.+++|+.+++++++
T Consensus       312 I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  312 IYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQKALK  353 (508)
T ss_pred             HHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHH
Confidence            2       1   23455666666766    7777777777777664

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.43  E-value=6.3e-10  Score=118.80  Aligned_cols=365  Identities=15%  Similarity=0.113  Sum_probs=261.1

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc-
Q 005877          161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-  239 (672)
Q Consensus       161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~-  239 (672)
                      ..+-.|......-|+++.+.+.|++++......                .+.+..++..+..-|...+|+..++..... 
T Consensus       324 ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~----------------~e~w~~~als~saag~~s~Av~ll~~~~~~~  387 (799)
T KOG4162|consen  324 AIFDHLTFALSRCGQFEVLAEQFEQALPFSFGE----------------HERWYQLALSYSAAGSDSKAVNLLRESLKKS  387 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh----------------HHHHHHHHHHHHHhccchHHHHHHHhhcccc
Confidence            334445555666788888888888876533221                123445777788888899999999987543 


Q ss_pred             ---CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHcCCCC-------cCCHHHH
Q 005877          240 ---GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----G--EPQSMEFLGEIYARGAGV-------ERNYTKA  302 (672)
Q Consensus       240 ---~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~--~~~a~~~Lg~~y~~g~g~-------~~~~~~A  302 (672)
                         .++..+.....++....    +..+++++|-.++++.     +  .+.++..+|..|..-...       ..-..++
T Consensus       388 ~~ps~~s~~Lmasklc~e~l----~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks  463 (799)
T KOG4162|consen  388 EQPSDISVLLMASKLCIERL----KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS  463 (799)
T ss_pred             cCCCcchHHHHHHHHHHhch----hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence               46788888888887653    7899999999999983     1  478888899888542211       1235678


Q ss_pred             HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCCchhcHHHHHH
Q 005877          303 LEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---EEAGGHYNLGVMYYKGIGVKRDVKLACK  377 (672)
Q Consensus       303 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~  377 (672)
                      +..++++++.  .|+.+.+.++.-|..     +++.+.|.++.+++++.   +++.++..|+.+...    .+++..|+.
T Consensus       464 lqale~av~~d~~dp~~if~lalq~A~-----~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa----~kr~~~Al~  534 (799)
T KOG4162|consen  464 LQALEEAVQFDPTDPLVIFYLALQYAE-----QRQLTSALDYAREALALNRGDSAKAWHLLALVLSA----QKRLKEALD  534 (799)
T ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHH-----HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh----hhhhHHHHH
Confidence            8888888765  489999999999974     56999999999999887   478999999999988    899999998


Q ss_pred             HHHHHHHc-CC-----------------HH-----HHHHHHH---------HHHcC--------C-CccCCHHHHHHHHH
Q 005877          378 YFLVAANA-GH-----------------QK-----AFYQLAK---------MFHTG--------V-GLKKNLHMATALYK  416 (672)
Q Consensus       378 ~~~~A~~~-~~-----------------~~-----a~~~L~~---------~y~~g--------~-g~~~~~~~A~~~~~  416 (672)
                      ...-+++- ++                 .+     ....|+.         ...+|        . ....+..+|++-++
T Consensus       535 vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr  614 (799)
T KOG4162|consen  535 VVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSR  614 (799)
T ss_pred             HHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhH
Confidence            88887652 22                 00     0001110         00011        1 12335555555555


Q ss_pred             HHHHc--------C-------------Chh-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHH--HHHHHHHH
Q 005877          417 LVAER--------G-------------PWS-------SLSRWALESYLKGDVGKAFLLYSRMAELGYEVA--QSNAAWIL  466 (672)
Q Consensus       417 ~a~~~--------~-------------~~~-------a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a--~~nla~~l  466 (672)
                      ++...        +             +..       .+...+..+...++.++|..++.++....+..+  ++-.|.++
T Consensus       615 ~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~  694 (799)
T KOG4162|consen  615 YLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLL  694 (799)
T ss_pred             HHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHH
Confidence            44211        1             111       123446667778899999999999977764443  34455665


Q ss_pred             HHhCCCCcccCCCCCCCchHhHHHHHHHHHH--HHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHH--HHHHHHhc--CCH
Q 005877          467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQ--ASEQGNEHAALLIGDAYYYGRGTQRDYERAAE--AYMHARSQ--SNA  540 (672)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~--~~~~A~~~--~~~  540 (672)
                      ..                .+.+.+|.+.|.-  +++|+++.++..+|.++.    ..|+..-|..  .++.|++.  .++
T Consensus       695 ~~----------------~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll----e~G~~~la~~~~~L~dalr~dp~n~  754 (799)
T KOG4162|consen  695 EV----------------KGQLEEAKEAFLVALALDPDHVPSMTALAELLL----ELGSPRLAEKRSLLSDALRLDPLNH  754 (799)
T ss_pred             HH----------------HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH----HhCCcchHHHHHHHHHHHhhCCCCH
Confidence            55                7789999999985  578889999999999999    4455555555  99999874  689


Q ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          541 QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       541 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ++++.||.++..    .||.+.|.++|+-|+++.+...
T Consensus       755 eaW~~LG~v~k~----~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  755 EAWYYLGEVFKK----LGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHHHHHH----ccchHHHHHHHHHHHhhccCCC
Confidence            999999999988    9999999999999999986654

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=99.42  E-value=5.3e-12  Score=111.35  Aligned_cols=199  Identities=22%  Similarity=0.313  Sum_probs=158.3

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHH
Q 005877          277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH  355 (672)
Q Consensus       277 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~  355 (672)
                      ..|++...||....-   +++|+++|.+.|+.-.+. +.+.+.+.+|..++.|.|...++...|+.+|+.+.+.+++.+.
T Consensus        32 K~Pe~C~lLgdYlEg---i~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC  108 (248)
T KOG4014|consen   32 KRPESCQLLGDYLEG---IQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQAC  108 (248)
T ss_pred             CCchHHHHHHHHHHH---HHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHH
Confidence            568999999987764   589999999999988865 5899999999999999887778999999999999999999999


Q ss_pred             HHHHHHHHcCCC---chhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005877          356 YNLGVMYYKGIG---VKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWAL  432 (672)
Q Consensus       356 ~~Lg~~y~~g~g---~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~  432 (672)
                      .++|.++..|.-   ..-|..+|.+++.+|.+.++..+-++|..+|..|.      +++..       ..|+        
T Consensus       109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~------~k~~t-------~ap~--------  167 (248)
T KOG4014|consen  109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGK------EKFKT-------NAPG--------  167 (248)
T ss_pred             hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccc------hhhcc-------cCCC--------
Confidence            999999988743   33468899999999999999999999999998641      11000       0000        


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005877          433 ESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGD  512 (672)
Q Consensus       433 ~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~  512 (672)
                                                                    .+.+.+.                         +.
T Consensus       168 ----------------------------------------------~g~p~~~-------------------------~~  176 (248)
T KOG4014|consen  168 ----------------------------------------------EGKPLDR-------------------------AE  176 (248)
T ss_pred             ----------------------------------------------CCCCcch-------------------------hh
Confidence                                                          0111100                         11


Q ss_pred             HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877          513 AYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD  574 (672)
Q Consensus       513 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  574 (672)
                      .+.    ..+|.++|.++-.+|.+++++.+--|+..||..|.||++|.++|..|=++|.++.
T Consensus       177 ~~~----~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~  234 (248)
T KOG4014|consen  177 LGS----LSKDMDKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM  234 (248)
T ss_pred             hhh----hhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence            112    4578999999999999999999999999999999999999999999999888753

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=4.9e-10  Score=115.31  Aligned_cols=230  Identities=23%  Similarity=0.189  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-------
Q 005877          279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-------  350 (672)
Q Consensus       279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-------  350 (672)
                      +...-.||.....    ..+++.|++.|.++++.. +..-+.+.+-+|+.     .+.+.+.+..-..+++.+       
T Consensus       224 a~~ek~lgnaayk----kk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e-----~~~~~~c~~~c~~a~E~gre~rad~  294 (539)
T KOG0548|consen  224 AHKEKELGNAAYK----KKDFETAIQHYAKALELATDITYLNNIAAVYLE-----RGKYAECIELCEKAVEVGRELRADY  294 (539)
T ss_pred             hhHHHHHHHHHHH----hhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHh-----ccHHHHhhcchHHHHHHhHHHHHHH
Confidence            3455678888777    889999999999998775 33446677777774     557777777777777664       


Q ss_pred             --CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh--H
Q 005877          351 --EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--S  426 (672)
Q Consensus       351 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a  426 (672)
                        .+.+...+|..|..    .++++.++.+|++++...-.      ..+...    .++.++++...+..+-.++..  .
T Consensus       295 klIak~~~r~g~a~~k----~~~~~~ai~~~~kaLte~Rt------~~~ls~----lk~~Ek~~k~~e~~a~~~pe~A~e  360 (539)
T KOG0548|consen  295 KLIAKALARLGNAYTK----REDYEGAIKYYQKALTEHRT------PDLLSK----LKEAEKALKEAERKAYINPEKAEE  360 (539)
T ss_pred             HHHHHHHHHhhhhhhh----HHhHHHHHHHHHHHhhhhcC------HHHHHH----HHHHHHHHHHHHHHHhhChhHHHH
Confidence              23344456667766    78999999999997664321      222222    455666666666665555533  3


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--  502 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--  502 (672)
                      ...-|..++..|||.+|+..|.+|+...  ++....|.|.+|.+                .+.+.+|++--+++++.+  
T Consensus       361 ~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k----------------L~~~~~aL~Da~~~ieL~p~  424 (539)
T KOG0548|consen  361 EREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK----------------LGEYPEALKDAKKCIELDPN  424 (539)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----------------HhhHHHHHHHHHHHHhcCch
Confidence            4556899999999999999999998765  77778899999888                667788888877776664  


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 005877          503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHE  551 (672)
Q Consensus       503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~  551 (672)
                      ...++++=|.+++    .+++|++|.+.|+++++.  .+..+...+..+++
T Consensus       425 ~~kgy~RKg~al~----~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  425 FIKAYLRKGAALR----AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            4678888899999    889999999999999886  45566666666665

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.40  E-value=1.7e-10  Score=122.66  Aligned_cols=225  Identities=20%  Similarity=0.196  Sum_probs=163.4

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-------CCH---HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877          280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-------QLY---SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN  349 (672)
Q Consensus       280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~  349 (672)
                      .+...|+.+|..    ++++++|+.+++++++.       .++   ..+..+|.+|..     ++++++|+..|++|+..
T Consensus       200 ~~~~~La~~y~~----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-----~~k~~eAv~ly~~AL~i  270 (508)
T KOG1840|consen  200 RTLRNLAEMYAV----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-----LGKYDEAVNLYEEALTI  270 (508)
T ss_pred             HHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHH
Confidence            566779999998    99999999999999875       333   335569999986     67999999999999864


Q ss_pred             -------C---CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCccCCHH
Q 005877          350 -------E---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-------GH---QKAFYQLAKMFHTGVGLKKNLH  409 (672)
Q Consensus       350 -------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~---~~a~~~L~~~y~~g~g~~~~~~  409 (672)
                             .   .+..+.+|+.+|..    .+++++|..++++|++.       .+   ...+.+++.++..    .+.++
T Consensus       271 ~e~~~G~~h~~va~~l~nLa~ly~~----~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~E  342 (508)
T KOG1840|consen  271 REEVFGEDHPAVAATLNNLAVLYYK----QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYE  342 (508)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhc----cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchh
Confidence                   2   25678899999988    89999999999999762       12   3456788888887    89999


Q ss_pred             HHHHHHHHHHHcC-------C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHh
Q 005877          410 MATALYKLVAERG-------P---WSSLSRWALESYLKGDVGKAFLLYSRMAELG----------YEVAQSNAAWILDKY  469 (672)
Q Consensus       410 ~A~~~~~~a~~~~-------~---~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g----------~~~a~~nla~~l~~~  469 (672)
                      +|+.+|+++++.-       +   +....++|..|+..|++++|..+|++|+..-          .....+++|-.+.+.
T Consensus       343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~  422 (508)
T KOG1840|consen  343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL  422 (508)
T ss_pred             HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh
Confidence            9999999987652       2   2357899999999999999999999997652          245566777776551


Q ss_pred             CCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHH---HHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005877          470 GEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHA---ALLIGDAYYYGRGTQRDYERAAEAYMHAR  535 (672)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a---~~~lG~~y~~g~g~~~d~~~A~~~~~~A~  535 (672)
                      .         .+.....-+.+++.+. ++.-+++++.   +-+|+-+|.    .+|+++.|+++.++++
T Consensus       423 k---------~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~----~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  423 K---------KYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYR----AQGNYEAAEELEEKVL  477 (508)
T ss_pred             c---------ccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHH----HcccHHHHHHHHHHHH
Confidence            1         1111122344444444 5555554333   337777777    6777777777666654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.39  E-value=6.9e-09  Score=113.37  Aligned_cols=180  Identities=16%  Similarity=0.030  Sum_probs=147.5

Q ss_pred             hhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877          105 VRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV  180 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~  180 (672)
                      .++.+.|+..|-+++..  ..+.++..||.+|..    --|..+|..+|.+|-+  .++..+--.++..|.+..+.+.|.
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd----~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~  546 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRD----SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAF  546 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHH
Confidence            46678999999997665  568899999999998    5599999999999987  567788888999999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCC
Q 005877          181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA--QKGNAGAMYKIGLFYYFGLRG  258 (672)
Q Consensus       181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa--~~~~~~a~~~Lg~~y~~~~~~  258 (672)
                      ...-++.+..+...              ....+...|..|...++..+|+..|+.+.  ++.|.++...||.+|...|  
T Consensus       547 ~I~l~~~qka~a~~--------------~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG--  610 (1238)
T KOG1127|consen  547 EICLRAAQKAPAFA--------------CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG--  610 (1238)
T ss_pred             HHHHHHhhhchHHH--------------HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC--
Confidence            88666555443321              11223347888889999999999999985  4569999999999999884  


Q ss_pred             cccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877          259 LRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR  311 (672)
Q Consensus       259 ~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  311 (672)
                         .+..|++.|.||..  +.+..+.+..+.+--.    .|.|++|+..+...+.
T Consensus       611 ---ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd----~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  611 ---RYSHALKVFTKASLLRPLSKYGRFKEAVMECD----NGKYKEALDALGLIIY  658 (1238)
T ss_pred             ---ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH----hhhHHHHHHHHHHHHH
Confidence               99999999999876  4677888889998888    8999999999888764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.39  E-value=4.5e-10  Score=108.38  Aligned_cols=266  Identities=15%  Similarity=0.175  Sum_probs=181.2

Q ss_pred             hHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-CC-----
Q 005877           88 SYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-GN-----  159 (672)
Q Consensus        88 ~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~-----  159 (672)
                      -|..|+..+.       .++.++|+..|...++  ++..+++..||.+|..    .|..++|+..++-..+. +-     
T Consensus        38 ~Yv~GlNfLL-------s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRs----RGEvDRAIRiHQ~L~~spdlT~~qr  106 (389)
T COG2956          38 DYVKGLNFLL-------SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRS----RGEVDRAIRIHQTLLESPDLTFEQR  106 (389)
T ss_pred             HHHhHHHHHh-------hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHh----cchHHHHHHHHHHHhcCCCCchHHH
Confidence            4667777775       4677899999999554  4668999999999999    99999999999998874 32     


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc
Q 005877          160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK  239 (672)
Q Consensus       160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~  239 (672)
                      .-++..||.=|+..|-+|.|...|..+++...                ..+++...+-.+|....+.++||+.-++....
T Consensus       107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e----------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~  170 (389)
T COG2956         107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE----------------FAEGALQQLLNIYQATREWEKAIDVAERLVKL  170 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh----------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence            36788899999999999999999998876431                12344556777788888888888888877666


Q ss_pred             CCHHH-------HHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 005877          240 GNAGA-------MYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAA  310 (672)
Q Consensus       240 ~~~~a-------~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~  310 (672)
                      +.-..       +..|+..+...     .|.++|+.++++|+.  +....+-..+|.+...    .|++++|++.++.+.
T Consensus       171 ~~q~~~~eIAqfyCELAq~~~~~-----~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV~~~e~v~  241 (389)
T COG2956         171 GGQTYRVEIAQFYCELAQQALAS-----SDVDRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAVEALERVL  241 (389)
T ss_pred             CCccchhHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHHHHHHHHH
Confidence            54333       33444444433     477777788877765  3566777777777777    777777777777777


Q ss_pred             HcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc-
Q 005877          311 RQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-  385 (672)
Q Consensus       311 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-  385 (672)
                      +++   -++....|-.+|..     .|+.++.+.++.++.+.. .+++-..+..+-..    ..-.+.|..+..+-++. 
T Consensus       242 eQn~~yl~evl~~L~~~Y~~-----lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~----~~G~~~Aq~~l~~Ql~r~  312 (389)
T COG2956         242 EQNPEYLSEVLEMLYECYAQ-----LGKPAEGLNFLRRAMETNTGADAELMLADLIEL----QEGIDAAQAYLTRQLRRK  312 (389)
T ss_pred             HhChHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHccCCccHHHHHHHHHHH----hhChHHHHHHHHHHHhhC
Confidence            765   34456666667764     457777777777776653 44555555555544    33344444444443333 


Q ss_pred             CCHHHHHHHHHHH
Q 005877          386 GHQKAFYQLAKMF  398 (672)
Q Consensus       386 ~~~~a~~~L~~~y  398 (672)
                      ......+.|-...
T Consensus       313 Pt~~gf~rl~~~~  325 (389)
T COG2956         313 PTMRGFHRLMDYH  325 (389)
T ss_pred             CcHHHHHHHHHhh
Confidence            2344444444433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.38  E-value=7.8e-12  Score=123.53  Aligned_cols=252  Identities=19%  Similarity=0.208  Sum_probs=167.1

Q ss_pred             hhhHHHHHHHHHHHHhCCC------hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHH--------hCCCHHHHHHHHHHH
Q 005877          105 VRVMEEATSEVESAAMEGD------PHARSVLGFLYGMGMMRERNKGKAFLYHHFAA--------EGGNIQSKMAVAYTY  170 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~--------~~~~~~a~~~Lg~~y  170 (672)
                      .+++...+.+|+.+.+-|-      +..+..||..|..    .+||++|++|++-=+        ..|...+.-+||..+
T Consensus        30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfy----L~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl  105 (639)
T KOG1130|consen   30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFY----LKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL  105 (639)
T ss_pred             ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhh----HhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence            5788888888888877653      3456678888887    888999988876422        136667777888888


Q ss_pred             hccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 005877          171 LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGL  250 (672)
Q Consensus       171 ~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~  250 (672)
                      .-.|.+++|+.+..+-++....                       ++                   -..+...++|+||.
T Consensus       106 Kv~G~fdeA~~cc~rhLd~are-----------------------Lg-------------------Drv~e~RAlYNlgn  143 (639)
T KOG1130|consen  106 KVKGAFDEALTCCFRHLDFARE-----------------------LG-------------------DRVLESRALYNLGN  143 (639)
T ss_pred             hhhcccchHHHHHHHHhHHHHH-----------------------Hh-------------------HHHhhhHHHhhhhh
Confidence            8888888888777765543210                       00                   11246789999999


Q ss_pred             HHHhcCCC---------------cccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 005877          251 FYYFGLRG---------------LRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLT  307 (672)
Q Consensus       251 ~y~~~~~~---------------~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  307 (672)
                      +|...+..               +...++.|.++|..-++.    |+    ..++.+||..|.-    .||++.|+...+
T Consensus       144 vYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H~  219 (639)
T KOG1130|consen  144 VYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFHK  219 (639)
T ss_pred             hhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHHH
Confidence            99877521               122455666677665542    33    3566777777776    889999988877


Q ss_pred             HHHHc----CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH----hCC----CHHHHHHHHHHHHcCCCchhc
Q 005877          308 HAARQ----QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA----DNE----EAGGHYNLGVMYYKGIGVKRD  371 (672)
Q Consensus       308 ~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~----~~~----~~~a~~~Lg~~y~~g~g~~~~  371 (672)
                      .-++.    |+    -.++.+||.+|..     .++++.|+++|++.+    +.+    .+.++|.||..|.-    .++
T Consensus       220 ~RL~ia~efGDrAaeRRA~sNlgN~hif-----lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl----l~e  290 (639)
T KOG1130|consen  220 LRLEIAQEFGDRAAERRAHSNLGNCHIF-----LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL----LKE  290 (639)
T ss_pred             HHHHHHHHhhhHHHHHHhhcccchhhhh-----hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH----HHH
Confidence            65432    33    2356778888875     568888888888764    333    35667788888877    678


Q ss_pred             HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHH
Q 005877          372 VKLACKYFLVAAN--------AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA  419 (672)
Q Consensus       372 ~~~A~~~~~~A~~--------~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~  419 (672)
                      +++|+.|+.+-+.        .|...+.+.||..|..    .++.++|+.+.++.+
T Consensus       291 ~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a----lg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  291 VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA----LGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----hhhHHHHHHHHHHHH
Confidence            8888888776422        2344555666655554    555555555555543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.37  E-value=4.5e-11  Score=123.81  Aligned_cols=94  Identities=19%  Similarity=0.197  Sum_probs=83.1

Q ss_pred             hHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHH
Q 005877           88 SYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSK  163 (672)
Q Consensus        88 ~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~  163 (672)
                      =|..|..+|.       .|++.+|+-.|+.++.  |++.+|+-.||.....    ..+...|+..++++.+  ++|.+++
T Consensus       288 Pf~eG~~lm~-------nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaE----NE~E~~ai~AL~rcl~LdP~NleaL  356 (579)
T KOG1125|consen  288 PFKEGCNLMK-------NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAE----NENEQNAISALRRCLELDPTNLEAL  356 (579)
T ss_pred             hHHHHHHHHh-------cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhh----ccchHHHHHHHHHHHhcCCccHHHH
Confidence            4778888885       5889999999999764  5899999999999988    8889999999999987  7999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877          164 MAVAYTYLRQDMHDKAVKLYAELAEIAVN  192 (672)
Q Consensus       164 ~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~  192 (672)
                      +.||..|...+.-..|++++.+=+...++
T Consensus       357 maLAVSytNeg~q~~Al~~L~~Wi~~~p~  385 (579)
T KOG1125|consen  357 MALAVSYTNEGLQNQALKMLDKWIRNKPK  385 (579)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhCcc
Confidence            99999999999999999999988776544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2.2e-09  Score=110.62  Aligned_cols=396  Identities=15%  Similarity=0.054  Sum_probs=239.8

Q ss_pred             hhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877          105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV  180 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~  180 (672)
                      .+||+.|+..|..++  +++|.--+.+-.-.|..    .+++.+|+.--.+.++  +.=+.++..+|..+.-.|++++|+
T Consensus        15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~----~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~   90 (539)
T KOG0548|consen   15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYAS----LGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI   90 (539)
T ss_pred             cccHHHHHHHHHHHHccCCCccchhcchHHHHHH----HhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence            688999999999965  45666666677777777    8889999888888877  456788999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 005877          181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR  260 (672)
Q Consensus       181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~  260 (672)
                      .-|.+-++..+++...                ..++...+  ..++. +-+.+      ..|..+-.|...=.....-..
T Consensus        91 ~ay~~GL~~d~~n~~L----------------~~gl~~a~--~~~~~-~~~~~------~~p~~~~~l~~~p~t~~~~~~  145 (539)
T KOG0548|consen   91 LAYSEGLEKDPSNKQL----------------KTGLAQAY--LEDYA-ADQLF------TKPYFHEKLANLPLTNYSLSD  145 (539)
T ss_pred             HHHHHHhhcCCchHHH----------------HHhHHHhh--hHHHH-hhhhc------cCcHHHHHhhcChhhhhhhcc
Confidence            9999988876543211                11122222  00000 00000      122222222111000000000


Q ss_pred             cCHHHHHHHHHH---HHH--cCCHHHHHHHHHHHHcCCC-------------------------CcCCHHHHHHHHHHHH
Q 005877          261 RDRTKALMWFSK---AAD--KGEPQSMEFLGEIYARGAG-------------------------VERNYTKALEWLTHAA  310 (672)
Q Consensus       261 ~~~~~A~~~~~~---a~~--~~~~~a~~~Lg~~y~~g~g-------------------------~~~~~~~A~~~~~~a~  310 (672)
                      .++.+-++.+++   .+.  ..++..+-.+|.+...+.+                         ...|..+-.+      
T Consensus       146 ~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~------  219 (539)
T KOG0548|consen  146 PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR------  219 (539)
T ss_pred             HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHH------
Confidence            011111111111   010  1244445555544332111                         0001111001      


Q ss_pred             HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-H
Q 005877          311 RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-Q  388 (672)
Q Consensus       311 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-~  388 (672)
                      ..-.......||.....     +.++..|++.|.++++.+ +..-+.+.+-.|..    .+.+.+.+....++++.|- .
T Consensus       220 ~k~~a~~ek~lgnaayk-----kk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e----~~~~~~c~~~c~~a~E~gre~  290 (539)
T KOG0548|consen  220 VKEKAHKEKELGNAAYK-----KKDFETAIQHYAKALELATDITYLNNIAAVYLE----RGKYAECIELCEKAVEVGREL  290 (539)
T ss_pred             HHHhhhHHHHHHHHHHH-----hhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHh----ccHHHHhhcchHHHHHHhHHH
Confidence            11123345567776654     448889999999888775 33445677888887    7888888888888877652 1


Q ss_pred             --------HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHH-
Q 005877          389 --------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQ-  459 (672)
Q Consensus       389 --------~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~-  459 (672)
                              .+.-.+|..|..    .++++.|+.+|++++.....      ..+.....+.+++....+..+-.+...+. 
T Consensus       291 rad~klIak~~~r~g~a~~k----~~~~~~ai~~~~kaLte~Rt------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e  360 (539)
T KOG0548|consen  291 RADYKLIAKALARLGNAYTK----REDYEGAIKYYQKALTEHRT------PDLLSKLKEAEKALKEAERKAYINPEKAEE  360 (539)
T ss_pred             HHHHHHHHHHHHHhhhhhhh----HHhHHHHHHHHHHHhhhhcC------HHHHHHHHHHHHHHHHHHHHHhhChhHHHH
Confidence                    122233334443    68888888888887765421      22223334455555555554444333221 


Q ss_pred             -HHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005877          460 -SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS  536 (672)
Q Consensus       460 -~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~  536 (672)
                       .+-|.-+.+                .+++.+|+..|.+++..++  +..+.|.+.||.    ..+++..|+...+++++
T Consensus       361 ~r~kGne~Fk----------------~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~----kL~~~~~aL~Da~~~ie  420 (539)
T KOG0548|consen  361 EREKGNEAFK----------------KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL----KLGEYPEALKDAKKCIE  420 (539)
T ss_pred             HHHHHHHHHh----------------ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH----HHhhHHHHHHHHHHHHh
Confidence             122333333                6789999999999988765  555669999999    89999999999999988


Q ss_pred             c--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          537 Q--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       537 ~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      .  ....++..=|.++..    .+++++|.+.|+++++.+|...
T Consensus       421 L~p~~~kgy~RKg~al~~----mk~ydkAleay~eale~dp~~~  460 (539)
T KOG0548|consen  421 LDPNFIKAYLRKGAALRA----MKEYDKALEAYQEALELDPSNA  460 (539)
T ss_pred             cCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCchhH
Confidence            6  567888888999887    8999999999999999998754

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.34  E-value=2.6e-10  Score=105.40  Aligned_cols=183  Identities=19%  Similarity=0.113  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 005877          242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSA  317 (672)
Q Consensus       242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a  317 (672)
                      ..+.+.||.-|+..+     |+..|..-+++|++.  .+..++..++.+|..    .|+.+.|.+.|++|+..  ++.+.
T Consensus        35 a~arlqLal~YL~~g-----d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~----~Ge~~~A~e~YrkAlsl~p~~GdV  105 (250)
T COG3063          35 AKARLQLALGYLQQG-----DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK----LGENDLADESYRKALSLAPNNGDV  105 (250)
T ss_pred             HHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCccch
Confidence            467889999999994     999999999999874  688999999999999    99999999999999875  58889


Q ss_pred             HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHH
Q 005877          318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF  391 (672)
Q Consensus       318 ~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~  391 (672)
                      +++.|.....     +|.+++|..+|++|+..    ..++++.|+|.|-++    .|+++.|.++|+++++.  ..+.+.
T Consensus       106 LNNYG~FLC~-----qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~dp~~~~~~  176 (250)
T COG3063         106 LNNYGAFLCA-----QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELDPQFPPAL  176 (250)
T ss_pred             hhhhhHHHHh-----CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhCcCCChHH
Confidence            9999988875     67999999999999987    367899999999999    99999999999999885  467888


Q ss_pred             HHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhH-HHHHHH-HHHhcCCHHHHHHH
Q 005877          392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSS-LSRWAL-ESYLKGDVGKAFLL  446 (672)
Q Consensus       392 ~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a-~~~lg~-~~~~~g~~~~A~~~  446 (672)
                      ..++..+..    .+++..|..++++....++..+ -.+||. +--..||-+.+-.|
T Consensus       177 l~~a~~~~~----~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y  229 (250)
T COG3063         177 LELARLHYK----AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRY  229 (250)
T ss_pred             HHHHHHHHh----cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHH
Confidence            889988887    8999999999999988886543 334444 23345555555444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.34  E-value=7.2e-11  Score=122.31  Aligned_cols=222  Identities=15%  Similarity=0.120  Sum_probs=181.0

Q ss_pred             hhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 005877          215 NKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYA  290 (672)
Q Consensus       215 ~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~  290 (672)
                      ..|..+++.|+..+|+-.|+.++.+  ++.+++..||.+....     .+-..|+..++++++  +++-.++..||..|.
T Consensus       290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN-----E~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt  364 (579)
T KOG1125|consen  290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN-----ENEQNAISALRRCLELDPTNLEALMALAVSYT  364 (579)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc-----cchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence            4688889999999999999999877  5999999999999888     488999999999987  479999999999999


Q ss_pred             cCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC---C-CCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHH
Q 005877          291 RGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGY---G-VEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMY  362 (672)
Q Consensus       291 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~---g-~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y  362 (672)
                      +    ++.-.+|++.+.+-+....+..+......-....   + ........-.++|-.++..    .+++.+.-||.+|
T Consensus       365 N----eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy  440 (579)
T KOG1125|consen  365 N----EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY  440 (579)
T ss_pred             h----hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence            9    9999999999999877543333221110000000   0 0111233444566666553    4899999999999


Q ss_pred             HcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcC
Q 005877          363 YKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKG  438 (672)
Q Consensus       363 ~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g  438 (672)
                      .-    .+++++|+++|+.|++  +.+...|++||-.+.+    .....+|++.|.+|++..|  ..+.+++|..+..+|
T Consensus       441 ~l----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN----~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG  512 (579)
T KOG1125|consen  441 NL----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN----GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG  512 (579)
T ss_pred             hc----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC----CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence            98    9999999999999987  5678899999999998    5889999999999999875  578999999999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 005877          439 DVGKAFLLYSRMAEL  453 (672)
Q Consensus       439 ~~~~A~~~~~~a~~~  453 (672)
                      .|++|..+|-.|+.+
T Consensus       513 ~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  513 AYKEAVKHLLEALSM  527 (579)
T ss_pred             hHHHHHHHHHHHHHh
Confidence            999999999999876

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.30  E-value=6.1e-09  Score=111.40  Aligned_cols=382  Identities=16%  Similarity=0.081  Sum_probs=263.9

Q ss_pred             hhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh----CCCHHHHHHHHHH-HhccCCHH
Q 005877          105 VRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE----GGNIQSKMAVAYT-YLRQDMHD  177 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~----~~~~~a~~~Lg~~-y~~~~~~~  177 (672)
                      -|+++.+.+.|+++..-  +..+-++.++..|..    .+...+|+..++....    +.++..++..+.+ +.+.+..+
T Consensus       336 ~g~f~~lae~fE~~~~~~~~~~e~w~~~als~sa----ag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e  411 (799)
T KOG4162|consen  336 CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSA----AGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE  411 (799)
T ss_pred             HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHH----hccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence            47888899999985443  677888889998887    6778999999998875    3455555555554 45689999


Q ss_pred             HHHHHHHHHHHHHH--hhhhccCCCCcccchhcccCchhhhhHhhh-----------ccCChHHHHHHHHHHHHc--CCH
Q 005877          178 KAVKLYAELAEIAV--NSFLISKDSPVIEPIRIHNGAEENKGALRK-----------SRGEDDEAFQILEYQAQK--GNA  242 (672)
Q Consensus       178 ~A~~~y~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~g~~~~Ai~~~~~aa~~--~~~  242 (672)
                      +++.|-.++++...  .....       ....+      -+|..|.           +.-...++++.+++++..  .|+
T Consensus       412 egldYA~kai~~~~~~~~~l~-------~~~~l------~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp  478 (799)
T KOG4162|consen  412 EGLDYAQKAISLLGGQRSHLK-------PRGYL------FLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP  478 (799)
T ss_pred             hHHHHHHHHHHHhhhhhhhhh-------hhHHH------HHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            99999999998431  11111       00011      1121111           111335788999998655  599


Q ss_pred             HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHH
Q 005877          243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYN  319 (672)
Q Consensus       243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~  319 (672)
                      .+.+.|+.-|-..     ++.+.|.++.+++++.   .++.++..|+.+...    ++++..|+.....+++.--..-..
T Consensus       479 ~~if~lalq~A~~-----R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa----~kr~~~Al~vvd~al~E~~~N~~l  549 (799)
T KOG4162|consen  479 LVIFYLALQYAEQ-----RQLTSALDYAREALALNRGDSAKAWHLLALVLSA----QKRLKEALDVVDAALEEFGDNHVL  549 (799)
T ss_pred             hHHHHHHHHHHHH-----HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHhhhhhhh
Confidence            9999999998776     6999999999999886   579999999999998    999999999999998641111111


Q ss_pred             HHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc----CC-CchhcHHHHHHHHHHHHH--------
Q 005877          320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYK----GI-GVKRDVKLACKYFLVAAN--------  384 (672)
Q Consensus       320 ~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~----g~-g~~~~~~~A~~~~~~A~~--------  384 (672)
                      .-|.+...-   .-+|.++|+......+..  ..+.++-.++..-..    |. -...+..+|++.++++..        
T Consensus       550 ~~~~~~i~~---~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~  626 (799)
T KOG4162|consen  550 MDGKIHIEL---TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS  626 (799)
T ss_pred             chhhhhhhh---hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence            122222210   124788888776665543  112222222211111    11 123455556555555432        


Q ss_pred             -------------cCCH-------HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHH
Q 005877          385 -------------AGHQ-------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGK  442 (672)
Q Consensus       385 -------------~~~~-------~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~  442 (672)
                                   +++.       ..+.-.+..+..    .++.++|..++.++....+  +..++..|..+..+|+.++
T Consensus       627 ~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~----~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~E  702 (799)
T KOG4162|consen  627 AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLL----SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEE  702 (799)
T ss_pred             cccccccCcccccCCCCchHHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHH
Confidence                         1111       223345555665    7888999999999988886  4568888999999999999


Q ss_pred             HHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCC
Q 005877          443 AFLLYSRM--AELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGR  518 (672)
Q Consensus       443 A~~~~~~a--~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~  518 (672)
                      |...|..|  ++++++.....+|-++.+.|..              +......++..+++  +.++++|+.||.++.   
T Consensus       703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~--------------~la~~~~~L~dalr~dp~n~eaW~~LG~v~k---  765 (799)
T KOG4162|consen  703 AKEAFLVALALDPDHVPSMTALAELLLELGSP--------------RLAEKRSLLSDALRLDPLNHEAWYYLGEVFK---  765 (799)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc--------------chHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---
Confidence            99999999  5678999999999999885532              33444447776654  557999999999999   


Q ss_pred             CCCCCHHHHHHHHHHHHhc
Q 005877          519 GTQRDYERAAEAYMHARSQ  537 (672)
Q Consensus       519 g~~~d~~~A~~~~~~A~~~  537 (672)
                       ..||.++|.++|.-|++.
T Consensus       766 -~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  766 -KLGDSKQAAECFQAALQL  783 (799)
T ss_pred             -HccchHHHHHHHHHHHhh
Confidence             999999999999999875

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.30  E-value=2.7e-10  Score=105.24  Aligned_cols=159  Identities=18%  Similarity=0.072  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005877          389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW  464 (672)
Q Consensus       389 ~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~  464 (672)
                      .+...||.-|..    .+|+..|..-+++|++.+|.  .++.-++.+|...|+.+.|.+.|++|+..  ++...++|+|+
T Consensus        36 ~arlqLal~YL~----~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~  111 (250)
T COG3063          36 KARLQLALGYLQ----QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence            455667777776    78888888888888877753  45666677777888888888888888554  57788888888


Q ss_pred             HHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--C
Q 005877          465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG----NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--S  538 (672)
Q Consensus       465 ~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~  538 (672)
                      .|..                ++++++|..+|++|+...    .++++-|+|+|-.    +.++.++|.++|+++++.  +
T Consensus       112 FLC~----------------qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal----~~gq~~~A~~~l~raL~~dp~  171 (250)
T COG3063         112 FLCA----------------QGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL----KAGQFDQAEEYLKRALELDPQ  171 (250)
T ss_pred             HHHh----------------CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh----hcCCchhHHHHHHHHHHhCcC
Confidence            8877                667888888888887653    4788889999999    899999999999999874  7


Q ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877          539 NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP  575 (672)
Q Consensus       539 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  575 (672)
                      ++.+.-.++.++..    .+|+..|..++++-....+
T Consensus       172 ~~~~~l~~a~~~~~----~~~y~~Ar~~~~~~~~~~~  204 (250)
T COG3063         172 FPPALLELARLHYK----AGDYAPARLYLERYQQRGG  204 (250)
T ss_pred             CChHHHHHHHHHHh----cccchHHHHHHHHHHhccc
Confidence            88888999999877    8999999999999887765

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.28  E-value=1.5e-07  Score=98.91  Aligned_cols=314  Identities=14%  Similarity=0.083  Sum_probs=216.2

Q ss_pred             HhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC
Q 005877          218 ALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGA  293 (672)
Q Consensus       218 ~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~  293 (672)
                      ......|..++-..+|+++...-  .+..++..+..+...     +|...|...+.++.+.  ++-...+.--.+-..  
T Consensus       558 ~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-----gdv~~ar~il~~af~~~pnseeiwlaavKle~e--  630 (913)
T KOG0495|consen  558 MFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-----GDVPAARVILDQAFEANPNSEEIWLAAVKLEFE--  630 (913)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-----CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc--
Confidence            33445677777788888887662  444455555555544     4888888888888774  333333333333333  


Q ss_pred             CCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchh
Q 005877          294 GVERNYTKALEWLTHAARQ-QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR  370 (672)
Q Consensus       294 g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~  370 (672)
                        ...++.|..+|.++... |....++.-..+...     +++.++|+.+++++++.  +....+..+|+++.+    .+
T Consensus       631 --n~e~eraR~llakar~~sgTeRv~mKs~~~er~-----ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~----~~  699 (913)
T KOG0495|consen  631 --NDELERARDLLAKARSISGTERVWMKSANLERY-----LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ----ME  699 (913)
T ss_pred             --cccHHHHHHHHHHHhccCCcchhhHHHhHHHHH-----hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH----HH
Confidence              67889999999998765 344455555544443     56889999999999886  578888999999999    99


Q ss_pred             cHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHH--HhcCCHHHHHHH
Q 005877          371 DVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALES--YLKGDVGKAFLL  446 (672)
Q Consensus       371 ~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~--~~~g~~~~A~~~  446 (672)
                      +.+.|...|....+  ++.+..+..|+.+-+.    .++..+|...++++.-.+|.++.+++..+-  .+.|+.++|...
T Consensus       700 ~ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l  775 (913)
T KOG0495|consen  700 NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL  775 (913)
T ss_pred             HHHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence            99999999988877  4677888888888887    778999999999999888888877777664  467899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHH
Q 005877          447 YSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYER  526 (672)
Q Consensus       447 ~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~  526 (672)
                      ..+|++.=...+......+...              ...++-.+++..+++  -.+|+..+..+|.+++    ..+.+++
T Consensus       776 makALQecp~sg~LWaEaI~le--------------~~~~rkTks~DALkk--ce~dphVllaia~lfw----~e~k~~k  835 (913)
T KOG0495|consen  776 MAKALQECPSSGLLWAEAIWLE--------------PRPQRKTKSIDALKK--CEHDPHVLLAIAKLFW----SEKKIEK  835 (913)
T ss_pred             HHHHHHhCCccchhHHHHHHhc--------------cCcccchHHHHHHHh--ccCCchhHHHHHHHHH----HHHHHHH
Confidence            9998876433332222222111              001222233333332  2467888889999999    8899999


Q ss_pred             HHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          527 AAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       527 A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      |.+||.+|++.  ++.+++-.+=..+..    -|.-+.-.+.+++.....|..
T Consensus       836 ar~Wf~Ravk~d~d~GD~wa~fykfel~----hG~eed~kev~~~c~~~EP~h  884 (913)
T KOG0495|consen  836 AREWFERAVKKDPDNGDAWAWFYKFELR----HGTEEDQKEVLKKCETAEPTH  884 (913)
T ss_pred             HHHHHHHHHccCCccchHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCC
Confidence            99999999874  455554433333322    355666677888887777764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.27  E-value=1.3e-08  Score=98.45  Aligned_cols=216  Identities=16%  Similarity=0.109  Sum_probs=165.2

Q ss_pred             hHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC------HHHHHHHHHH
Q 005877          217 GALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE------PQSMEFLGEI  288 (672)
Q Consensus       217 ~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~  288 (672)
                      |.-+.-..+.++|++.|...++.  ...++.+.||.+|-.-     +..++||...+..++..+      ..+...||.=
T Consensus        42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsR-----GEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSR-----GEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhc-----chHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence            33344556788899999888765  3678889999998776     488999998888777532      4677888888


Q ss_pred             HHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCC-------HHHHHHHH
Q 005877          289 YARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE-------AGGHYNLG  359 (672)
Q Consensus       289 y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg  359 (672)
                      |..    .|-++.|...|...++.+  -..|+-.|-.+|..    + .++++|++.-++.+..+.       +.-+..|+
T Consensus       117 ym~----aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~----t-reW~KAId~A~~L~k~~~q~~~~eIAqfyCELA  187 (389)
T COG2956         117 YMA----AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA----T-REWEKAIDVAERLVKLGGQTYRVEIAQFYCELA  187 (389)
T ss_pred             HHH----hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH----h-hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence            888    888899999998888755  34577888888875    3 488999998888877642       34445666


Q ss_pred             HHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC---hhHHHHHHHHH
Q 005877          360 VMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP---WSSLSRWALES  434 (672)
Q Consensus       360 ~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~  434 (672)
                      ..+..    ..|.++|+.++++|++-+  ...+-..+|.++..    +|++.+|++.++.+++.++   +...-.|-.+|
T Consensus       188 q~~~~----~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y  259 (389)
T COG2956         188 QQALA----SSDVDRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAVEALERVLEQNPEYLSEVLEMLYECY  259 (389)
T ss_pred             HHHhh----hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            66666    778888888888887744  56777788888886    8888888888888888876   34566777778


Q ss_pred             HhcCCHHHHHHHHHHHHHcC
Q 005877          435 YLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       435 ~~~g~~~~A~~~~~~a~~~g  454 (672)
                      ...|+.++...++.++.+..
T Consensus       260 ~~lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         260 AQLGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             HHhCCHHHHHHHHHHHHHcc
Confidence            88888888888888887654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=3.4e-07  Score=91.41  Aligned_cols=381  Identities=13%  Similarity=0.075  Sum_probs=234.9

Q ss_pred             CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCC
Q 005877          122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS  200 (672)
Q Consensus       122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~  200 (672)
                      ++..-.+..+.+|..    .++.++|+........ ...+..-+.++..+...++..++.--|.+++..-|-....    
T Consensus        95 ~~~e~~r~~aecy~~----~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~----  166 (564)
T KOG1174|consen   95 GDAEQRRRAAECYRQ----IGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV----  166 (564)
T ss_pred             ccHHHHHHHHHHHHH----HccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH----
Confidence            445555666666666    5566666655554433 3556667778888887777777777777766543211000    


Q ss_pred             CcccchhcccCchhhhhHhhhccCChHHHHHHHHHH--------HHcC-CHHHH--HHHHHHHHhcCCCcccCHHHHHHH
Q 005877          201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ--------AQKG-NAGAM--YKIGLFYYFGLRGLRRDRTKALMW  269 (672)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~a--------a~~~-~~~a~--~~Lg~~y~~~~~~~~~~~~~A~~~  269 (672)
                                    -.+.+       +..+.-++..        ..+. +-...  ..++.++.       .+...|...
T Consensus       167 --------------i~~ll-------~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~-------~~hs~a~~t  218 (564)
T KOG1174|consen  167 --------------IEALL-------ELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFN-------FKHSDASQT  218 (564)
T ss_pred             --------------HHHHH-------HHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHh-------cccchhhhH
Confidence                          00000       0000000000        0001 11111  11222221       133334333


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHH--HHH
Q 005877          270 FSKAAD----KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTK--AKE  341 (672)
Q Consensus       270 ~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~--A~~  341 (672)
                      +--+-+    .++...+..+|.++..    .||+.+|+--|+++.-.  ....++-..|++...     .|+++.  ++-
T Consensus       219 ~l~le~~~~lr~NvhLl~~lak~~~~----~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~-----eg~~e~~~~L~  289 (564)
T KOG1174|consen  219 FLMLHDNTTLRCNEHLMMALGKCLYY----NGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQ-----EGGCEQDSALM  289 (564)
T ss_pred             HHHHHhhccCCccHHHHHHHhhhhhh----hcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHh-----ccCHhhHHHHH
Confidence            332222    3667777777888777    77888888888776543  355566666666553     234433  333


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHH
Q 005877          342 YFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA  419 (672)
Q Consensus       342 ~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~  419 (672)
                      .+--++......-++--|.....    .+++..|+.+-+|+++.+  +.+++..-|.++..    .+..++|+-.|+.|.
T Consensus       290 ~~Lf~~~~~ta~~wfV~~~~l~~----~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~IaFR~Aq  361 (564)
T KOG1174|consen  290 DYLFAKVKYTASHWFVHAQLLYD----EKKFERALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAVIAFRTAQ  361 (564)
T ss_pred             HHHHhhhhcchhhhhhhhhhhhh----hhhHHHHHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHHHHHHHHH
Confidence            33333333344444444555555    678888888888887754  66777777777776    788888888888887


Q ss_pred             HcCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHH-HHHHHhCCCCcccCCCCCCCchHhHHHHHHH
Q 005877          420 ERGPW--SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAA-WILDKYGEGSMCMGESGFCTDAERHQCAHSL  494 (672)
Q Consensus       420 ~~~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla-~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~  494 (672)
                      ...|-  ..+-.|-..|...|.+.+|...-..+...  .+..++.-+| .+               ...+..--++|.++
T Consensus       362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V---------------~~~dp~~rEKAKkf  426 (564)
T KOG1174|consen  362 MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLV---------------LFPDPRMREKAKKF  426 (564)
T ss_pred             hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhccee---------------eccCchhHHHHHHH
Confidence            77653  45666666777888888887777666443  2333333222 11               12234456899999


Q ss_pred             HHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 005877          495 WWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQAL  571 (672)
Q Consensus       495 ~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  571 (672)
                      ++++..+  +...|.+.++.++.    .++.+..++..+++++.. .+..-+..||.++..    ...+++|.++|.+|+
T Consensus       427 ~ek~L~~~P~Y~~AV~~~AEL~~----~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A----~Ne~Q~am~~y~~AL  498 (564)
T KOG1174|consen  427 AEKSLKINPIYTPAVNLIAELCQ----VEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRA----QNEPQKAMEYYYKAL  498 (564)
T ss_pred             HHhhhccCCccHHHHHHHHHHHH----hhCccchHHHHHHHHHhhccccHHHHHHHHHHHH----hhhHHHHHHHHHHHH
Confidence            9987654  56888999999999    899999999999999875 667778899999876    788999999999999


Q ss_pred             hcCCCCc
Q 005877          572 EVDPAAK  578 (672)
Q Consensus       572 ~~~~~~~  578 (672)
                      .++|.+.
T Consensus       499 r~dP~~~  505 (564)
T KOG1174|consen  499 RQDPKSK  505 (564)
T ss_pred             hcCccch
Confidence            9999875

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.22  E-value=2.4e-08  Score=97.17  Aligned_cols=319  Identities=16%  Similarity=0.114  Sum_probs=178.3

Q ss_pred             CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCC
Q 005877          122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD  199 (672)
Q Consensus       122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~  199 (672)
                      .+..-++.||.-+..    .+.+..|+..|..|++  +++-.+.+.-|.+|+..|.-.-|+.-+.+++++.|.-.     
T Consensus        36 advekhlElGk~lla----~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~-----  106 (504)
T KOG0624|consen   36 ADVEKHLELGKELLA----RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM-----  106 (504)
T ss_pred             HHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH-----
Confidence            345567788887776    7788899999998887  46778888889999998888888888888887543211     


Q ss_pred             CCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHH
Q 005877          200 SPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG-----NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA  274 (672)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~-----~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~  274 (672)
                                 .+..+.|.+.+++|.++.|+.-|++..+..     ..+++-.|+.+-...            ..     
T Consensus       107 -----------~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~------------~l-----  158 (504)
T KOG0624|consen  107 -----------AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW------------VL-----  158 (504)
T ss_pred             -----------HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH------------HH-----
Confidence                       222245555556666666655555544332     122222222211100            00     


Q ss_pred             HcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--C
Q 005877          275 DKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--E  350 (672)
Q Consensus       275 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~  350 (672)
                              .....-+..    .||...|+.+....++..  ++..+..-+.+|..     .+++.+|+.-++.+.+.  +
T Consensus       159 --------~~ql~s~~~----~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~-----~~e~k~AI~Dlk~askLs~D  221 (504)
T KOG0624|consen  159 --------VQQLKSASG----SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA-----EGEPKKAIHDLKQASKLSQD  221 (504)
T ss_pred             --------HHHHHHHhc----CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhcccc
Confidence                    000001111    456666666666666654  22233334455543     34666666666666443  4


Q ss_pred             CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHH
Q 005877          351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK--AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS  428 (672)
Q Consensus       351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~--a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~  428 (672)
                      +.+.+|.+..++..    .+|.+.++...+..++.++..  .+-    .|..    .+...+.++-.+++++        
T Consensus       222 nTe~~ykis~L~Y~----vgd~~~sL~~iRECLKldpdHK~Cf~----~YKk----lkKv~K~les~e~~ie--------  281 (504)
T KOG0624|consen  222 NTEGHYKISQLLYT----VGDAENSLKEIRECLKLDPDHKLCFP----FYKK----LKKVVKSLESAEQAIE--------  281 (504)
T ss_pred             chHHHHHHHHHHHh----hhhHHHHHHHHHHHHccCcchhhHHH----HHHH----HHHHHHHHHHHHHHHh--------
Confidence            66666666666666    666666666655555543221  110    1111    2223333333333333        


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCH
Q 005877          429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNA--AWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNE  504 (672)
Q Consensus       429 ~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nl--a~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~  504 (672)
                              .+++.++++-.++.++.........+  =.++            .......+++-+|+.--...++-  +++
T Consensus       282 --------~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~------------c~C~~~d~~~~eAiqqC~evL~~d~~dv  341 (504)
T KOG0624|consen  282 --------EKHWTECLEAGEKVLKNEPEETMIRYNGFRVL------------CTCYREDEQFGEAIQQCKEVLDIDPDDV  341 (504)
T ss_pred             --------hhhHHHHHHHHHHHHhcCCcccceeeeeehee------------eecccccCCHHHHHHHHHHHHhcCchHH
Confidence                    45566666666666665544332111  0010            11122256778888877766544  456


Q ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 005877          505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS  538 (672)
Q Consensus       505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~  538 (672)
                      +++..-+..|.    ...+|+.|++-|++|.+.+
T Consensus       342 ~~l~dRAeA~l----~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  342 QVLCDRAEAYL----GDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             HHHHHHHHHHh----hhHHHHHHHHHHHHHHhcC
Confidence            67778888888    7788888888888887753

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.22  E-value=7.2e-08  Score=93.90  Aligned_cols=314  Identities=12%  Similarity=0.064  Sum_probs=186.5

Q ss_pred             cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCH
Q 005877           85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNI  160 (672)
Q Consensus        85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~  160 (672)
                      ..-.+.+|...+.       .+.+..|+..|..+++.  .+..+.|.-|..|..    .+.-.-|+.-+.+.++  ++..
T Consensus        38 vekhlElGk~lla-------~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLA----mGksk~al~Dl~rVlelKpDF~  106 (504)
T KOG0624|consen   38 VEKHLELGKELLA-------RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLA----MGKSKAALQDLSRVLELKPDFM  106 (504)
T ss_pred             HHHHHHHHHHHHH-------hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh----hcCCccchhhHHHHHhcCccHH
Confidence            4457788888775       58899999999998764  678899999999998    7778888888888876  6788


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccC--chhhhhHhhhccCChHHHHHHHHHHHH
Q 005877          161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNG--AEENKGALRKSRGEDDEAFQILEYQAQ  238 (672)
Q Consensus       161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~g~~~~Ai~~~~~aa~  238 (672)
                      .|...-|.+++.+|.++.|..-|+.+++..++.-...   ...+.+.+..+  .......-+...|+...||.+.....+
T Consensus       107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE  183 (504)
T KOG0624|consen  107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL---EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE  183 (504)
T ss_pred             HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH---HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence            9999999999999999999999999988554321100   00000000000  001112223344555555555555544


Q ss_pred             cC--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-
Q 005877          239 KG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-  313 (672)
Q Consensus       239 ~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-  313 (672)
                      ..  ++..+-..+.+|...     +++.+||.-++.+.+.  ++.++++.+..++..    .+|.+.++...+..++.+ 
T Consensus       184 i~~Wda~l~~~Rakc~i~~-----~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~----vgd~~~sL~~iRECLKldp  254 (504)
T KOG0624|consen  184 IQPWDASLRQARAKCYIAE-----GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT----VGDAENSLKEIRECLKLDP  254 (504)
T ss_pred             cCcchhHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhccccchHHHHHHHHHHHh----hhhHHHHHHHHHHHHccCc
Confidence            42  444444555555544     2555555555555442  445555555555555    555555555555554432 


Q ss_pred             -CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHH---
Q 005877          314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK---  389 (672)
Q Consensus       314 -~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~---  389 (672)
                       +-.++-    .|-.     .....+.++-.++++                .    .+++.++++-.++.++..+..   
T Consensus       255 dHK~Cf~----~YKk-----lkKv~K~les~e~~i----------------e----~~~~t~cle~ge~vlk~ep~~~~i  305 (504)
T KOG0624|consen  255 DHKLCFP----FYKK-----LKKVVKSLESAEQAI----------------E----EKHWTECLEAGEKVLKNEPEETMI  305 (504)
T ss_pred             chhhHHH----HHHH-----HHHHHHHHHHHHHHH----------------h----hhhHHHHHHHHHHHHhcCCcccce
Confidence             111100    0000     001122222222221                1    345666666666666554432   


Q ss_pred             ---HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          390 ---AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       390 ---a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                         ....+..|+..    .+++.+|+.-+.++++..+  .+++...+.+|.....|+.|+.-|++|.+.+
T Consensus       306 r~~~~r~~c~C~~~----d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  306 RYNGFRVLCTCYRE----DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             eeeeeheeeecccc----cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence               22233445554    7778888888888887774  4566777777777778888888888887664

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.20  E-value=5.3e-08  Score=106.64  Aligned_cols=440  Identities=14%  Similarity=0.018  Sum_probs=288.9

Q ss_pred             CCCCcccccCC--CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCH
Q 005877           69 PGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNK  144 (672)
Q Consensus        69 ~~~a~~~~~~~--~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~  144 (672)
                      ...+...|-++  .++.-+.+.-.+|..+--       .-|...|.+.|.+|.+.  ++..+.-.++..|..    ..+.
T Consensus       474 ~~~al~ali~alrld~~~apaf~~LG~iYrd-------~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae----~~~w  542 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVSLAPAFAFLGQIYRD-------SDDMKRAKKCFDKAFELDATDAEAAAASADTYAE----ESTW  542 (1238)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc----cccH
Confidence            33444444444  345455555566665442       34889999999997655  778888899999998    8899


Q ss_pred             HHHHHHHHHHHhCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhh
Q 005877          145 GKAFLYHHFAAEGGN----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR  220 (672)
Q Consensus       145 ~~A~~~~~~A~~~~~----~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  220 (672)
                      +.|......+.+...    ......+|..|...++.-+|+..++-++..+|+++                ..+..+|..|
T Consensus       543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~----------------n~W~gLGeAY  606 (1238)
T KOG1127|consen  543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY----------------NLWLGLGEAY  606 (1238)
T ss_pred             HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH----------------HHHHHHHHHH
Confidence            999988777665432    24445589999999999999999999998877765                3355689999


Q ss_pred             hccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 005877          221 KSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---------GEPQSMEFLGEIY  289 (672)
Q Consensus       221 ~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~y  289 (672)
                      ...|.+.-|++.|.++...  .+.-+.+..+.+--..     +.+.+|+..+...+..         |-++.+.+++..+
T Consensus       607 ~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~-----GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~  681 (1238)
T KOG1127|consen  607 PESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN-----GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDS  681 (1238)
T ss_pred             HhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            9999999999999988655  4777788888887766     4999999988887652         4556666666655


Q ss_pred             HcCCCCcCCHHHHHHHHHHHHHc-------C---CHHHHH--------------------HHHHHH--HcCCCCCcCCH-
Q 005877          290 ARGAGVERNYTKALEWLTHAARQ-------Q---LYSAYN--------------------GIGYLY--VKGYGVEKKNY-  336 (672)
Q Consensus       290 ~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~--------------------~Lg~~y--~~g~g~~~~~~-  336 (672)
                      .-    .+-+.+|..+++++++.       .   +.-.+.                    .++.+.  ..+.++.+.+- 
T Consensus       682 ~~----~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~  757 (1238)
T KOG1127|consen  682 AI----TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDL  757 (1238)
T ss_pred             HH----HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhH
Confidence            54    55566666666666542       1   111111                    111111  12223323222 


Q ss_pred             -HHHHHHHHHHHhC-CCHHHHHHHHHHHHc-----CCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCC
Q 005877          337 -TKAKEYFEKAADN-EEAGGHYNLGVMYYK-----GIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKN  407 (672)
Q Consensus       337 -~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~-----g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~  407 (672)
                       --+.+++-..+.. .++..++|||.-|..     |. +..+...|+.+++++++.  ++...+..||.+  .   ..++
T Consensus       758 l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~e-t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl--s---g~gn  831 (1238)
T KOG1127|consen  758 LFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGE-TMKDACTAIRCCKKAVSLCANNEGLWNALGVL--S---GIGN  831 (1238)
T ss_pred             HHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCC-cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh--h---ccch
Confidence             3455555555443 468889999987765     22 244557999999999874  577788888877  3   2689


Q ss_pred             HHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCC
Q 005877          408 LHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCT  483 (672)
Q Consensus       408 ~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~  483 (672)
                      +.-|..+|-++....|  ...++++|..+.+..|++.|-..+.++....  +..++.--|.+...               
T Consensus       832 va~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~ea---------------  896 (1238)
T KOG1127|consen  832 VACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEA---------------  896 (1238)
T ss_pred             hhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHH---------------
Confidence            9999999999877765  4568899999999999999999999885554  44444444444444               


Q ss_pred             chHhHHHHHHHHHHHH--hCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH------Hh------cCCHHHHHHH
Q 005877          484 DAERHQCAHSLWWQAS--EQG---NEHAALLIGDAYYYGRGTQRDYERAAEAYMHA------RS------QSNAQAMFNL  546 (672)
Q Consensus       484 ~~~~~~~A~~~~~~a~--~~~---~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A------~~------~~~~~a~~~L  546 (672)
                       .++..++..++..+-  ..+   -+...|.+......-  ..||++.-+..-++.      ++      ++...|+.-.
T Consensus       897 -vG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~--~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~  973 (1238)
T KOG1127|consen  897 -VGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL--QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAAN  973 (1238)
T ss_pred             -HHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH--hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHH
Confidence             556666666666521  111   133333333222211  455555555544442      11      2345667777


Q ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877          547 GYMHEHGQGLPLDLHLAKRYYDQALE  572 (672)
Q Consensus       547 g~~y~~g~g~~~d~~~A~~~~~~A~~  572 (672)
                      |...++    .+.+..|.+.+.+.+.
T Consensus       974 gstlEh----L~ey~~a~ela~Rlig  995 (1238)
T KOG1127|consen  974 GSTLEH----LEEYRAALELATRLIG  995 (1238)
T ss_pred             HhHHHH----HHHHHHHHHHHHHHHH
Confidence            777776    6666666666665543

>PLN02789 farnesyltranstransferase

Probab=99.18  E-value=1.7e-08  Score=103.01  Aligned_cols=244  Identities=9%  Similarity=0.031  Sum_probs=170.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchh-cH
Q 005877          296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR-DV  372 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~-~~  372 (672)
                      .+++.+|+.+|+..+..                    .+..++|+..+.++++.  ++..++...|.++..    .+ ++
T Consensus        33 ~~~~~~a~~~~ra~l~~--------------------~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~----L~~~l   88 (320)
T PLN02789         33 TPEFREAMDYFRAVYAS--------------------DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEA----LDADL   88 (320)
T ss_pred             CHHHHHHHHHHHHHHHc--------------------CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH----cchhH
Confidence            35666666666665543                    23567777787777765  366777777777766    44 57


Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCC--HHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHH
Q 005877          373 KLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKN--LHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLL  446 (672)
Q Consensus       373 ~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~--~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~  446 (672)
                      ++++.++.++++.  .+..++++.+.++..    .++  .++++.+++++++.++  ..++...+.++...|++++++.+
T Consensus        89 ~eeL~~~~~~i~~npknyqaW~~R~~~l~~----l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~  164 (320)
T PLN02789         89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEK----LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEY  164 (320)
T ss_pred             HHHHHHHHHHHHHCCcchHHhHHHHHHHHH----cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence            8888888888764  456677777777654    333  3678888888888774  55778888888888889999999


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCC
Q 005877          447 YSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQR  522 (672)
Q Consensus       447 ~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~  522 (672)
                      +.++++.  .+..|+++.++++.+.+.    +  .+.   ....++++.+..+++  .+.+..+++.++.++........
T Consensus       165 ~~~~I~~d~~N~sAW~~R~~vl~~~~~----l--~~~---~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~  235 (320)
T PLN02789        165 CHQLLEEDVRNNSAWNQRYFVITRSPL----L--GGL---EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV  235 (320)
T ss_pred             HHHHHHHCCCchhHHHHHHHHHHhccc----c--ccc---cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence            9998775  488888888888766321    0  000   123456788887775  56789999999999985211235


Q ss_pred             CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC--------------CHHHHHHHHHHHHhcCCC
Q 005877          523 DYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPL--------------DLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       523 d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~--------------d~~~A~~~~~~A~~~~~~  576 (672)
                      ...+|+....++...  .++.|+..|+.+|..|....+              +.++|.+.++...+.+|.
T Consensus       236 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i  305 (320)
T PLN02789        236 SDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPM  305 (320)
T ss_pred             cchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence            566788888887663  688999999999987643221              456777777766444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.13  E-value=1.8e-07  Score=98.58  Aligned_cols=305  Identities=11%  Similarity=0.064  Sum_probs=190.5

Q ss_pred             hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhh
Q 005877          120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-----GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF  194 (672)
Q Consensus       120 ~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-----~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~  194 (672)
                      +|+.+.++..+|.+|..    .++.+.|...+.++...     +..+.....+.++...|++++|+..++++++..|.+.
T Consensus         2 dp~~~~a~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~   77 (355)
T cd05804           2 DPDFALGHAAAALLLLL----GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL   77 (355)
T ss_pred             CCccHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence            56778888888888877    66777777777776542     3345666778888888888888888888887654322


Q ss_pred             hccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHH
Q 005877          195 LISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA--QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSK  272 (672)
Q Consensus       195 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa--~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~  272 (672)
                      ..         ...    ...........+..+.+.+.++...  .++...+...+|.++...     +++++|+..+++
T Consensus        78 ~a---------~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-----G~~~~A~~~~~~  139 (355)
T cd05804          78 LA---------LKL----HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEA-----GQYDRAEEAARR  139 (355)
T ss_pred             HH---------HHH----hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHH
Confidence            00         000    0001111112344444444444311  123556777788888877     499999999999


Q ss_pred             HHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C--HHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Q 005877          273 AADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----L--YSAYNGIGYLYVKGYGVEKKNYTKAKEYFE  344 (672)
Q Consensus       273 a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~--~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~  344 (672)
                      +++.  .++.++..+|.+|..    .+++++|+.+++++++..    .  ...+..++.++..     .|++++|+.+|+
T Consensus       140 al~~~p~~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-----~G~~~~A~~~~~  210 (355)
T cd05804         140 ALELNPDDAWAVHAVAHVLEM----QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-----RGDYEAALAIYD  210 (355)
T ss_pred             HHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-----CCCHHHHHHHHH
Confidence            9874  678889999999998    899999999999998752    1  1235578888885     679999999999


Q ss_pred             HHHhCCC-HHHHH---HH----HHHHHcC-CCchhcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCccCCHHHHHH
Q 005877          345 KAADNEE-AGGHY---NL----GVMYYKG-IGVKRDVKLACKYFLVAANAGH--QKAFYQLAKMFHTGVGLKKNLHMATA  413 (672)
Q Consensus       345 ~a~~~~~-~~a~~---~L----g~~y~~g-~g~~~~~~~A~~~~~~A~~~~~--~~a~~~L~~~y~~g~g~~~~~~~A~~  413 (672)
                      ++..... +....   ..    -.....| .....+.+.......... .++  .......+.++..    .++.++|..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~----~~~~~~a~~  285 (355)
T cd05804         211 THIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHF-PDHGLAFNDLHAALALAG----AGDKDALDK  285 (355)
T ss_pred             HHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc-CcccchHHHHHHHHHHhc----CCCHHHHHH
Confidence            9864432 11111   21    1122222 112222322222221110 111  1111234444444    778999999


Q ss_pred             HHHHHHHcCC-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCHHHHH
Q 005877          414 LYKLVAERGP-----------WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GYEVAQS  460 (672)
Q Consensus       414 ~~~~a~~~~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~----g~~~a~~  460 (672)
                      .++.......           .......+..++..|++++|+..+..++..    |-..+|.
T Consensus       286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~  347 (355)
T cd05804         286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQR  347 (355)
T ss_pred             HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            8887644221           223556788899999999999999999654    4444543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.12  E-value=1.7e-06  Score=91.16  Aligned_cols=396  Identities=13%  Similarity=0.035  Sum_probs=268.3

Q ss_pred             CHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhh-hhc------------cCCCCcccc--
Q 005877          143 NKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS-FLI------------SKDSPVIEP--  205 (672)
Q Consensus       143 d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~-~~~------------~~~~~~~~~--  205 (672)
                      -|+.|...+.+|-+  +.++.....-+.+-...|+.+.-.+...+.+..-..+ ...            ...+..+..  
T Consensus       421 tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA  500 (913)
T KOG0495|consen  421 TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQA  500 (913)
T ss_pred             HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHH
Confidence            45666666666655  4566666666666666677666665555544322110 000            001111110  


Q ss_pred             -----hhc------ccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHH
Q 005877          206 -----IRI------HNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA  274 (672)
Q Consensus       206 -----~~l------~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~  274 (672)
                           +.+      ...+..+-+....+.+..+-|...|..+..--...-.+.+.-.++..   ..+..+.-..+|++++
T Consensus       501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek---~hgt~Esl~Allqkav  577 (913)
T KOG0495|consen  501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEK---SHGTRESLEALLQKAV  577 (913)
T ss_pred             HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHH---hcCcHHHHHHHHHHHH
Confidence                 011      01223345556677788888888888877664333233333333322   1246777788899998


Q ss_pred             Hc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-CCC
Q 005877          275 DK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD-NEE  351 (672)
Q Consensus       275 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~-~~~  351 (672)
                      ..  .....+.+.+.-+..    .||...|...+.++++.+.-.--..|+.+-+.+   +...++.|..+|.++-. .+.
T Consensus       578 ~~~pkae~lwlM~ake~w~----agdv~~ar~il~~af~~~pnseeiwlaavKle~---en~e~eraR~llakar~~sgT  650 (913)
T KOG0495|consen  578 EQCPKAEILWLMYAKEKWK----AGDVPAARVILDQAFEANPNSEEIWLAAVKLEF---ENDELERARDLLAKARSISGT  650 (913)
T ss_pred             HhCCcchhHHHHHHHHHHh----cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhh---ccccHHHHHHHHHHHhccCCc
Confidence            85  344455555666666    799999999999999864223333444444432   23488999999999955 467


Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh--HH
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SL  427 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~  427 (672)
                      ...++.-+.+-.-    .++.++|+.+++.+++.-  ....+..+|.+++.    .++.+.|...|-...+..|-.  .+
T Consensus       651 eRv~mKs~~~er~----ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~----~~~ie~aR~aY~~G~k~cP~~ipLW  722 (913)
T KOG0495|consen  651 ERVWMKSANLERY----LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ----MENIEMAREAYLQGTKKCPNSIPLW  722 (913)
T ss_pred             chhhHHHhHHHHH----hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH----HHHHHHHHHHHHhccccCCCCchHH
Confidence            8888888777766    789999999999999854  56788899999998    999999999999998888654  45


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHH
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAA  507 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~  507 (672)
                      ..++..-...|+..+|...++++.-.+...+...|+.+-..++              .++.+.|..+..+|++.-+....
T Consensus       723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR--------------~gn~~~a~~lmakALQecp~sg~  788 (913)
T KOG0495|consen  723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR--------------AGNKEQAELLMAKALQECPSSGL  788 (913)
T ss_pred             HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH--------------cCCHHHHHHHHHHHHHhCCccch
Confidence            5566667778899999999999976666666666665544422              55788899999999988887777


Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          508 LLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       508 ~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ..--.+...+.+  +.-.+++..+++.  .++|-.+...|.++..    .+.+++|++||.+|+..+|+..
T Consensus       789 LWaEaI~le~~~--~rkTks~DALkkc--e~dphVllaia~lfw~----e~k~~kar~Wf~Ravk~d~d~G  851 (913)
T KOG0495|consen  789 LWAEAIWLEPRP--QRKTKSIDALKKC--EHDPHVLLAIAKLFWS----EKKIEKAREWFERAVKKDPDNG  851 (913)
T ss_pred             hHHHHHHhccCc--ccchHHHHHHHhc--cCCchhHHHHHHHHHH----HHHHHHHHHHHHHHHccCCccc
Confidence            777777776643  3444444444443  3678888888988765    7899999999999999999854

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.10  E-value=2.9e-07  Score=97.11  Aligned_cols=302  Identities=12%  Similarity=-0.050  Sum_probs=197.2

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877          238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ  312 (672)
Q Consensus       238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  312 (672)
                      +++.+.++..+|.++...     ++++.+...+.++.+.     +..+..+..+.++..    .+++++|...++++++.
T Consensus         2 dp~~~~a~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~----~g~~~~A~~~~~~~l~~   72 (355)
T cd05804           2 DPDFALGHAAAALLLLLG-----GERPAAAAKAAAAAQALAARATERERAHVEALSAWI----AGDLPKALALLEQLLDD   72 (355)
T ss_pred             CCccHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            567888999999888776     3777777777776653     345567777888887    89999999999999875


Q ss_pred             C--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--
Q 005877          313 Q--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--  386 (672)
Q Consensus       313 ~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--  386 (672)
                      .  +..+... +..+.. .+...+....+...+......  +...+...+|.++..    .|++++|...++++++..  
T Consensus        73 ~P~~~~a~~~-~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~p~  146 (355)
T cd05804          73 YPRDLLALKL-HLGAFG-LGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE----AGQYDRAEEAARRALELNPD  146 (355)
T ss_pred             CCCcHHHHHH-hHHHHH-hcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence            3  4444443 333321 111122444455544442222  345566788889998    899999999999998854  


Q ss_pred             CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hh----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----H
Q 005877          387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS----SLSRWALESYLKGDVGKAFLLYSRMAELGY----E  456 (672)
Q Consensus       387 ~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~----a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~----~  456 (672)
                      ++.+...+|.++..    .+++++|+.+++++++..+  +.    .+..++..+...|++++|+..|+++.....    .
T Consensus       147 ~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~  222 (355)
T cd05804         147 DAWAVHAVAHVLEM----QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPA  222 (355)
T ss_pred             CcHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChH
Confidence            66788999999987    8999999999999998753  22    345789999999999999999999864432    1


Q ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005877          457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--EHAALLIGDAYYYGRGTQRDYERAAEAYMHA  534 (672)
Q Consensus       457 ~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A  534 (672)
                      ....+.+..+..+..       .+......+++.......... ++.  .......+.++.    ..++.++|...++..
T Consensus       223 ~~~~~~~~~l~~~~~-------~g~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~a~~~~----~~~~~~~a~~~L~~l  290 (355)
T cd05804         223 LDLLDAASLLWRLEL-------AGHVDVGDRWEDLADYAAWHF-PDHGLAFNDLHAALALA----GAGDKDALDKLLAAL  290 (355)
T ss_pred             HHHhhHHHHHHHHHh-------cCCCChHHHHHHHHHHHHhhc-CcccchHHHHHHHHHHh----cCCCHHHHHHHHHHH
Confidence            112133233322111       111111233333333322111 111  122235566665    678899999988775


Q ss_pred             Hhc-------C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877          535 RSQ-------S----NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD  574 (672)
Q Consensus       535 ~~~-------~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  574 (672)
                      ...       +    ......-.++.+..    .||.+.|++.+..|+...
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~----~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         291 KGRASSADDNKQPARDVGLPLAEALYAFA----EGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHhccCchhhhHHhhhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Confidence            431       1    13344555666555    789999999999998754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.08  E-value=1.9e-08  Score=99.47  Aligned_cols=176  Identities=15%  Similarity=0.096  Sum_probs=119.5

Q ss_pred             CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCCh---HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--
Q 005877           84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDP---HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--  156 (672)
Q Consensus        84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~---~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--  156 (672)
                      .+..++.+|..++.       .+++++|+..|++...  ++++   .+++.+|.+|..    .+++++|+..|+++++  
T Consensus        32 ~~~~~~~~g~~~~~-------~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~~  100 (235)
T TIGR03302        32 PAEELYEEAKEALD-------SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRLH  100 (235)
T ss_pred             CHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHC
Confidence            35678888888775       5899999999999544  4554   688999999999    9999999999999987  


Q ss_pred             CCCHH---HHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCC
Q 005877          157 GGNIQ---SKMAVAYTYLRQ--------DMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGE  225 (672)
Q Consensus       157 ~~~~~---a~~~Lg~~y~~~--------~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~  225 (672)
                      ++++.   +++.+|.++...        +++++|++.|+++++..|....                              
T Consensus       101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------------------------  150 (235)
T TIGR03302       101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY------------------------------  150 (235)
T ss_pred             cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh------------------------------
Confidence            45554   789999999875        7888999999998875443110                              


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcCCHH
Q 005877          226 DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYARGAGVERNYT  300 (672)
Q Consensus       226 ~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~  300 (672)
                      ..++...+.. .........+.+|.+|+..     +++.+|+..|+++++.     ..+.+++.+|.+|..    .++++
T Consensus       151 ~~~a~~~~~~-~~~~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~----lg~~~  220 (235)
T TIGR03302       151 APDAKKRMDY-LRNRLAGKELYVARFYLKR-----GAYVAAINRFETVVENYPDTPATEEALARLVEAYLK----LGLKD  220 (235)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH----cCCHH
Confidence            0011111100 0001122334666666666     3777777777777653     124667777777776    67777


Q ss_pred             HHHHHHHHHH
Q 005877          301 KALEWLTHAA  310 (672)
Q Consensus       301 ~A~~~~~~a~  310 (672)
                      +|+.+++...
T Consensus       221 ~A~~~~~~l~  230 (235)
T TIGR03302       221 LAQDAAAVLG  230 (235)
T ss_pred             HHHHHHHHHH
Confidence            7777666544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.07  E-value=2e-08  Score=99.21  Aligned_cols=175  Identities=16%  Similarity=0.079  Sum_probs=116.0

Q ss_pred             CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CH---HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--
Q 005877          351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQ---KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--  423 (672)
Q Consensus       351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--  423 (672)
                      .++.++.+|..+..    .+++++|+..|+++++..  ++   .+++.+|.++..    .+++++|+..|+++++..|  
T Consensus        32 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~  103 (235)
T TIGR03302        32 PAEELYEEAKEALD----SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRLHPNH  103 (235)
T ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCC
Confidence            45666667766666    667777777777666532  22   456667777666    6777777777777766653  


Q ss_pred             hh---HHHHHHHHHHhc--------CCHHHHHHHHHHHHHcC--CHHHH---HHHHHHHHHhCCCCcccCCCCCCCchHh
Q 005877          424 WS---SLSRWALESYLK--------GDVGKAFLLYSRMAELG--YEVAQ---SNAAWILDKYGEGSMCMGESGFCTDAER  487 (672)
Q Consensus       424 ~~---a~~~lg~~~~~~--------g~~~~A~~~~~~a~~~g--~~~a~---~nla~~l~~~~~~~~~~~~~~~~~~~~~  487 (672)
                      +.   +++.+|.+++..        |++++|+..|+++++..  +..+.   ..++.+..                    
T Consensus       104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~--------------------  163 (235)
T TIGR03302       104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN--------------------  163 (235)
T ss_pred             CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH--------------------
Confidence            22   456666666654        67777888887776553  22221   11111110                    


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHcCCCCCCCHHH
Q 005877          488 HQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-----SNAQAMFNLGYMHEHGQGLPLDLHL  562 (672)
Q Consensus       488 ~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~a~~~Lg~~y~~g~g~~~d~~~  562 (672)
                                    ........+|.+|+    ..+++.+|+..|+++++.     ..+++++.+|..|..    .|++++
T Consensus       164 --------------~~~~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~----lg~~~~  221 (235)
T TIGR03302       164 --------------RLAGKELYVARFYL----KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK----LGLKDL  221 (235)
T ss_pred             --------------HHHHHHHHHHHHHH----HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH----cCCHHH
Confidence                          01123457888898    889999999999999874     236899999999988    899999


Q ss_pred             HHHHHHHHHhcCC
Q 005877          563 AKRYYDQALEVDP  575 (672)
Q Consensus       563 A~~~~~~A~~~~~  575 (672)
                      |..+++......|
T Consensus       222 A~~~~~~l~~~~~  234 (235)
T TIGR03302       222 AQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHhhCC
Confidence            9999887765544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=3e-06  Score=91.25  Aligned_cols=224  Identities=20%  Similarity=0.218  Sum_probs=142.1

Q ss_pred             hhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC--c----ccCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCH
Q 005877          105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGM--M----RERN--KGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMH  176 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~--g----~~~d--~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~  176 (672)
                      .|+.+.|++-.+-.   .....+-+++.+--...  .    ..|.  ..+....+++|.+.++ +--...|.+-...|..
T Consensus       741 iG~MD~AfksI~~I---kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMl  816 (1416)
T KOG3617|consen  741 IGSMDAAFKSIQFI---KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGML  816 (1416)
T ss_pred             eccHHHHHHHHHHH---hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhH
Confidence            57778877766541   11234445555443300  0    0111  2334455666666554 4455667777888999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005877          177 DKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGL  256 (672)
Q Consensus       177 ~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~  256 (672)
                      ++|...|.+.-.-+                        -+..+|...|..++|++.-+.--.----..+++.+.-+... 
T Consensus       817 EeA~~lYr~ckR~D------------------------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear-  871 (1416)
T KOG3617|consen  817 EEALILYRQCKRYD------------------------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR-  871 (1416)
T ss_pred             HHHHHHHHHHHHHH------------------------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh-
Confidence            99999999875422                        25667888899999988766433223445677777766555 


Q ss_pred             CCcccCHHHHHHHHHHHHH----------------------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 005877          257 RGLRRDRTKALMWFSKAAD----------------------KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL  314 (672)
Q Consensus       257 ~~~~~~~~~A~~~~~~a~~----------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~  314 (672)
                          +|.+.|+++|+|+=.                      ..++..+...|.....    .|+.+.|+.+|..|-+   
T Consensus       872 ----~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES----~GemdaAl~~Y~~A~D---  940 (1416)
T KOG3617|consen  872 ----RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES----VGEMDAALSFYSSAKD---  940 (1416)
T ss_pred             ----ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc----ccchHHHHHHHHHhhh---
Confidence                589999999998611                      1345555666666666    6777777777776543   


Q ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHH
Q 005877          315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA  383 (672)
Q Consensus       315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~  383 (672)
                         ++.+-.+.-.     +|+.++|-..-+   +.++-.|.|.||.+|.+    .+++.+|+.+|.+|-
T Consensus       941 ---~fs~VrI~C~-----qGk~~kAa~iA~---esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 ---YFSMVRIKCI-----QGKTDKAARIAE---ESGDKAACYHLARMYEN----DGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ---hhhheeeEee-----ccCchHHHHHHH---hcccHHHHHHHHHHhhh----hHHHHHHHHHHHHHH
Confidence               1222222221     456666655433   45888999999999999    899999999999874

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.2e-07  Score=92.71  Aligned_cols=261  Identities=14%  Similarity=0.092  Sum_probs=205.4

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHH
Q 005877          157 GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ  236 (672)
Q Consensus       157 ~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~a  236 (672)
                      ++|..-+..+|.++...|++++|+-.|+++.-.++...         .       ...--+.+....|+++.--.+....
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i---------~-------~MD~Ya~LL~~eg~~e~~~~L~~~L  292 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV---------E-------AMDLYAVLLGQEGGCEQDSALMDYL  292 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh---------h-------hHHHHHHHHHhccCHhhHHHHHHHH
Confidence            58999999999999999999999999999876554311         1       1112455566777777655555444


Q ss_pred             --HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877          237 --AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ  312 (672)
Q Consensus       237 --a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  312 (672)
                        .......-++--|...+..     ++++.|+.+-+|+++.  .+..++..-|.+...    .++.++|+-.|+.|...
T Consensus       293 f~~~~~ta~~wfV~~~~l~~~-----K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~IaFR~Aq~L  363 (564)
T KOG1174|consen  293 FAKVKYTASHWFVHAQLLYDE-----KKFERALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAVIAFRTAQML  363 (564)
T ss_pred             Hhhhhcchhhhhhhhhhhhhh-----hhHHHHHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHHHHHHHHHhc
Confidence              3333444444445554444     6999999999999985  578899999999999    99999999999999765


Q ss_pred             --CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH-HHHHcCCCchhcHHHHHHHHHHHHH--c
Q 005877          313 --QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG-VMYYKGIGVKRDVKLACKYFLVAAN--A  385 (672)
Q Consensus       313 --~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg-~~y~~g~g~~~~~~~A~~~~~~A~~--~  385 (672)
                        -+..++..|-.+|+.     .+.+.+|...-..+...  .++.+...+| .++...   ..-.++|.+++++++.  +
T Consensus       364 ap~rL~~Y~GL~hsYLA-----~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d---p~~rEKAKkf~ek~L~~~P  435 (564)
T KOG1174|consen  364 APYRLEIYRGLFHSYLA-----QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD---PRMREKAKKFAEKSLKINP  435 (564)
T ss_pred             chhhHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC---chhHHHHHHHHHhhhccCC
Confidence              367788889899985     56899999888888764  5788888887 444332   5667899999999987  4


Q ss_pred             CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       386 ~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      +...|-..++.++..    .+.++.++.++++.+...+ ...+..||.++...+.+.+|+.+|..|+.++
T Consensus       436 ~Y~~AV~~~AEL~~~----Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  436 IYTPAVNLIAELCQV----EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             ccHHHHHHHHHHHHh----hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            567888999998886    8999999999999988774 4567889999999999999999999998875

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.00  E-value=1.1e-06  Score=104.94  Aligned_cols=350  Identities=13%  Similarity=0.028  Sum_probs=236.8

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHH---HHcCC
Q 005877          165 AVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ---AQKGN  241 (672)
Q Consensus       165 ~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~a---a~~~~  241 (672)
                      ..+..+...|++.+|+.++..+-+....                 .......+......|+.+.+..+++..   ...++
T Consensus       346 raa~~~~~~g~~~~Al~~a~~a~d~~~~-----------------~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~  408 (903)
T PRK04841        346 AAAEAWLAQGFPSEAIHHALAAGDAQLL-----------------RDILLQHGWSLFNQGELSLLEECLNALPWEVLLEN  408 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCCCHHHH-----------------HHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcC
Confidence            3445566667777777666554221100                 001112334445567777766666553   23356


Q ss_pred             HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----C-------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 005877          242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----G-------EPQSMEFLGEIYARGAGVERNYTKALEWLTHAA  310 (672)
Q Consensus       242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~  310 (672)
                      +......+.++...     +++++|..++..+.+.    +       .......+|.++..    .+++++|..++++++
T Consensus       409 ~~l~~~~a~~~~~~-----g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al  479 (903)
T PRK04841        409 PRLVLLQAWLAQSQ-----HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN----DGDPEEAERLAELAL  479 (903)
T ss_pred             cchHHHHHHHHHHC-----CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHH
Confidence            66667777777666     4999999999887642    1       12344566777777    899999999999998


Q ss_pred             Hc---CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhcHHHH
Q 005877          311 RQ---QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLA  375 (672)
Q Consensus       311 ~~---~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A  375 (672)
                      +.   ++    ..+...+|.++..     .|++++|..+++++.+.    +.    ..+..++|.++..    .|++++|
T Consensus       480 ~~~~~~~~~~~~~a~~~lg~~~~~-----~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~----~G~~~~A  550 (903)
T PRK04841        480 AELPLTWYYSRIVATSVLGEVHHC-----KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA----QGFLQAA  550 (903)
T ss_pred             hcCCCccHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH----CCCHHHH
Confidence            63   12    2355678888764     67999999999999753    22    3466788999988    8999999


Q ss_pred             HHHHHHHHHc----CC------HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----C---hhHHHHHHHHHHhcC
Q 005877          376 CKYFLVAANA----GH------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P---WSSLSRWALESYLKG  438 (672)
Q Consensus       376 ~~~~~~A~~~----~~------~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~---~~a~~~lg~~~~~~g  438 (672)
                      ..+++++.+.    +.      ......+|.++..    .+++++|...++++++..    +   ..++..++.++...|
T Consensus       551 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G  626 (903)
T PRK04841        551 YETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG  626 (903)
T ss_pred             HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence            9999998762    11      2234567777776    799999999999987642    1   234566788899999


Q ss_pred             CHHHHHHHHHHHHHcC----C-HHHHH---HHH-HHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--H---
Q 005877          439 DVGKAFLLYSRMAELG----Y-EVAQS---NAA-WILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--E---  504 (672)
Q Consensus       439 ~~~~A~~~~~~a~~~g----~-~~a~~---nla-~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~---  504 (672)
                      ++++|...+.++....    . .....   .+. ..+..                .++.+.|..++........  .   
T Consensus       627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~A~~~l~~~~~~~~~~~~~~  690 (903)
T PRK04841        627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM----------------TGDKEAAANWLRQAPKPEFANNHFL  690 (903)
T ss_pred             CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH----------------CCCHHHHHHHHHhcCCCCCccchhH
Confidence            9999999999985531    1 11111   111 11111                3466777777765443321  1   


Q ss_pred             -HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877          505 -HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----S----NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP  575 (672)
Q Consensus       505 -~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  575 (672)
                       .....+|.++.    ..+++++|...++++++.    +    ...++..+|..+..    .|+.++|..++.+|+++..
T Consensus       691 ~~~~~~~a~~~~----~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~----~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        691 QGQWRNIARAQI----LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ----QGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhC
Confidence             12457888888    789999999999998763    2    24578888998877    8999999999999999864


Q ss_pred             CC
Q 005877          576 AA  577 (672)
Q Consensus       576 ~~  577 (672)
                      ..
T Consensus       763 ~~  764 (903)
T PRK04841        763 RT  764 (903)
T ss_pred             cc
Confidence            43

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=1.2e-06  Score=85.89  Aligned_cols=392  Identities=12%  Similarity=0.012  Sum_probs=237.7

Q ss_pred             hhhHHHHHHHHHHHHhCC---ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHhccCCHHHH
Q 005877          105 VRVMEEATSEVESAAMEG---DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTYLRQDMHDKA  179 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~--~a~~~Lg~~y~~~~~~~~A  179 (672)
                      .+||..|+.+++-..+.+   ......-+|.+|..    .+||++|...|+.+.+.+++  +...+|+.++.-.|.|.+|
T Consensus        35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh----LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH----LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh----hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence            789999999999866553   34677789999998    99999999999999987655  5567899999999999998


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005877          180 VKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGL  259 (672)
Q Consensus       180 ~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~  259 (672)
                      ...-.++.+           .|...  |+       +-.+-.+.++.++-..+-+..-  +..+-++.|+.+.+..    
T Consensus       111 ~~~~~ka~k-----------~pL~~--RL-------lfhlahklndEk~~~~fh~~Lq--D~~EdqLSLAsvhYmR----  164 (557)
T KOG3785|consen  111 KSIAEKAPK-----------TPLCI--RL-------LFHLAHKLNDEKRILTFHSSLQ--DTLEDQLSLASVHYMR----  164 (557)
T ss_pred             HHHHhhCCC-----------ChHHH--HH-------HHHHHHHhCcHHHHHHHHHHHh--hhHHHHHhHHHHHHHH----
Confidence            766555422           11111  11       1222335555555444433332  2336677777776655    


Q ss_pred             ccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC
Q 005877          260 RRDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKN  335 (672)
Q Consensus       260 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~  335 (672)
                       ..|++|++.|++.+..+  ....-.+++.+|..    ..-++-+-+.+.--+.+  +.+.+.+..+-..++-.     +
T Consensus       165 -~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK----lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~-----n  234 (557)
T KOG3785|consen  165 -MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK----LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI-----N  234 (557)
T ss_pred             -HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh----cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh-----c
Confidence             38999999999987642  23345678888887    77777777766666654  35556554444333311     2


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHH
Q 005877          336 YTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALY  415 (672)
Q Consensus       336 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~  415 (672)
                      -..|.+-.+..++..+.. +-....+..+..-+-++-+-|++.+--.. ..-|+|..+|...|.+    ++|..+|+.+.
T Consensus       235 gr~ae~E~k~ladN~~~~-~~f~~~l~rHNLVvFrngEgALqVLP~L~-~~IPEARlNL~iYyL~----q~dVqeA~~L~  308 (557)
T KOG3785|consen  235 GRTAEDEKKELADNIDQE-YPFIEYLCRHNLVVFRNGEGALQVLPSLM-KHIPEARLNLIIYYLN----QNDVQEAISLC  308 (557)
T ss_pred             cchhHHHHHHHHhccccc-chhHHHHHHcCeEEEeCCccHHHhchHHH-hhChHhhhhheeeecc----cccHHHHHHHH
Confidence            233444444444443211 11122222222222334444544433222 2357899999999988    89999999987


Q ss_pred             HHHHHcCChhHHHHHHHHHHhcCCHHH-------HHHHHHHH----HHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCc
Q 005877          416 KLVAERGPWSSLSRWALESYLKGDVGK-------AFLLYSRM----AELGYEVAQSNAAWILDKYGEGSMCMGESGFCTD  484 (672)
Q Consensus       416 ~~a~~~~~~~a~~~lg~~~~~~g~~~~-------A~~~~~~a----~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~  484 (672)
                      +..--. .|.-+.-.|.+....|+-..       |...|+..    .+.+-....-..|..+.-                
T Consensus       309 Kdl~Pt-tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL----------------  371 (557)
T KOG3785|consen  309 KDLDPT-TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL----------------  371 (557)
T ss_pred             hhcCCC-ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH----------------
Confidence            643211 23334445666655554333       33333332    111111111112221111                


Q ss_pred             hHhHHHHHHHHH--HHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCCC
Q 005877          485 AERHQCAHSLWW--QASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ---SNAQAMFNLGYMHEHGQGLPLD  559 (672)
Q Consensus       485 ~~~~~~A~~~~~--~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~a~~~Lg~~y~~g~g~~~d  559 (672)
                      ..++++-+.++.  ++---+|.+..++++..+.    ..|+|.+|.+.|-+...+   +.....-.|+.+|-+    .+.
T Consensus       372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~----atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~----nkk  443 (557)
T KOG3785|consen  372 SFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKL----ATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIR----NKK  443 (557)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHH----HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHh----cCC
Confidence            345666666665  3445567778889999999    889999999999887543   445566778889876    667


Q ss_pred             HHHHHHHH
Q 005877          560 LHLAKRYY  567 (672)
Q Consensus       560 ~~~A~~~~  567 (672)
                      .+.|-..+
T Consensus       444 P~lAW~~~  451 (557)
T KOG3785|consen  444 PQLAWDMM  451 (557)
T ss_pred             chHHHHHH
Confidence            77765444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.97  E-value=3.9e-06  Score=88.74  Aligned_cols=356  Identities=13%  Similarity=0.062  Sum_probs=214.7

Q ss_pred             CCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--C
Q 005877           82 PGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--G  157 (672)
Q Consensus        82 ~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~  157 (672)
                      +..++.+-..|+..-.       .|+-++|....+.+.  ++...-+++.+|.++..    .++|++|++||+.|..  +
T Consensus        38 ~eHgeslAmkGL~L~~-------lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~----dK~Y~eaiKcy~nAl~~~~  106 (700)
T KOG1156|consen   38 PEHGESLAMKGLTLNC-------LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS----DKKYDEAIKCYRNALKIEK  106 (700)
T ss_pred             CccchhHHhccchhhc-------ccchHHHHHHHHHHhccCcccchhHHHHHHHHhh----hhhHHHHHHHHHHHHhcCC
Confidence            3345555555555332       577889999998854  45778899999999998    9999999999999976  6


Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHH
Q 005877          158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA  237 (672)
Q Consensus       158 ~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa  237 (672)
                      +|...+..|+.+-.+.++++.....-.+.++..+....                -+...+..+.-.|++..|+.+++...
T Consensus       107 dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra----------------~w~~~Avs~~L~g~y~~A~~il~ef~  170 (700)
T KOG1156|consen  107 DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA----------------SWIGFAVAQHLLGEYKMALEILEEFE  170 (700)
T ss_pred             CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999998888777777766543210                01123444556778888877776643


Q ss_pred             HcC----------CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHH
Q 005877          238 QKG----------NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEW  305 (672)
Q Consensus       238 ~~~----------~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  305 (672)
                      ...          ...+......+....     +.+++|.+.+.+--..  +.-.....-+.++..    .+++++|+..
T Consensus       171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~-----g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k----l~~lEeA~~~  241 (700)
T KOG1156|consen  171 KTQNTSPSKEDYEHSELLLYQNQILIEA-----GSLQKALEHLLDNEKQIVDKLAFEETKADLLMK----LGQLEEAVKV  241 (700)
T ss_pred             HhhccCCCHHHHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH----HhhHHhHHHH
Confidence            332          122333333344433     2456666655543221  112223344566776    7888888888


Q ss_pred             HHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHH-HHHHHH----------------------------------Hh
Q 005877          306 LTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAK-EYFEKA----------------------------------AD  348 (672)
Q Consensus       306 ~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~-~~~~~a----------------------------------~~  348 (672)
                      |...+..+  +..-+..+-.++..    .+ +.-+++ ..|...                                  ++
T Consensus       242 y~~Ll~rnPdn~~Yy~~l~~~lgk----~~-d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~  316 (700)
T KOG1156|consen  242 YRRLLERNPDNLDYYEGLEKALGK----IK-DMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS  316 (700)
T ss_pred             HHHHHhhCchhHHHHHHHHHHHHH----Hh-hhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence            88887764  21111122222210    01 333333 333333                                  33


Q ss_pred             CCCHHHHHHHHHHHHcCCCchhc---HHHHHHHHHHHHHc------------CCH----HHHHHHHHHHHcCCCccCCHH
Q 005877          349 NEEAGGHYNLGVMYYKGIGVKRD---VKLACKYFLVAANA------------GHQ----KAFYQLAKMFHTGVGLKKNLH  409 (672)
Q Consensus       349 ~~~~~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~A~~~------------~~~----~a~~~L~~~y~~g~g~~~~~~  409 (672)
                      .|-|.....+-.+|..    ...   .++-+.-|...+..            ..|    ...+.++..|..    .++++
T Consensus       317 Kg~p~vf~dl~SLyk~----p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~----~g~~~  388 (700)
T KOG1156|consen  317 KGVPSVFKDLRSLYKD----PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK----LGDYE  388 (700)
T ss_pred             cCCCchhhhhHHHHhc----hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH----cccHH
Confidence            3334444444444433    110   01111111111111            123    334555655655    89999


Q ss_pred             HHHHHHHHHHHcCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCcccCCCCCCCch
Q 005877          410 MATALYKLVAERGPWS--SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSN--AAWILDKYGEGSMCMGESGFCTDA  485 (672)
Q Consensus       410 ~A~~~~~~a~~~~~~~--a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~n--la~~l~~~~~~~~~~~~~~~~~~~  485 (672)
                      .|..|...|+...|..  -+..-|.++...|+++.|..++..+-+.+.+.-..|  -|...-+                .
T Consensus       389 ~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLr----------------A  452 (700)
T KOG1156|consen  389 VALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLR----------------A  452 (700)
T ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHH----------------c
Confidence            9999999999888754  466678889999999999999999999987665544  4444333                5


Q ss_pred             HhHHHHHHHHHHHHhCC
Q 005877          486 ERHQCAHSLWWQASEQG  502 (672)
Q Consensus       486 ~~~~~A~~~~~~a~~~~  502 (672)
                      ++.++|.+...+--..|
T Consensus       453 n~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  453 NEIEEAEEVLSKFTREG  469 (700)
T ss_pred             cccHHHHHHHHHhhhcc
Confidence            66777877766543333

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.96  E-value=2e-06  Score=86.08  Aligned_cols=279  Identities=15%  Similarity=0.058  Sum_probs=160.7

Q ss_pred             CCChhhHHHHHHHHHHHHhC-CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-CC--HHHHHHHHHHHhccCCHH
Q 005877          102 NGDVRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-GN--IQSKMAVAYTYLRQDMHD  177 (672)
Q Consensus       102 ~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~--~~a~~~Lg~~y~~~~~~~  177 (672)
                      .-..|||.+|.+...++++- ..|...+.+|---..   ..+|.++|-.|..++++. |+  .......+.+....+|++
T Consensus        94 ~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~---qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~  170 (400)
T COG3071          94 KLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQ---QRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP  170 (400)
T ss_pred             HHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHH---hcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence            33479999999999996666 446655555543333   278999999999999985 43  356677788888899999


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHH-
Q 005877          178 KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYY-  253 (672)
Q Consensus       178 ~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~-  253 (672)
                      .|..-..++.++.+..         .+.+++       ...+|...|+++....++.+..+.+   ++++.-.--..+. 
T Consensus       171 aA~~~v~~ll~~~pr~---------~~vlrL-------a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g  234 (400)
T COG3071         171 AARENVDQLLEMTPRH---------PEVLRL-------ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG  234 (400)
T ss_pred             hHHHHHHHHHHhCcCC---------hHHHHH-------HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence            9998888888765431         111222       4556778888888888888776664   3332111111111 


Q ss_pred             --hcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcC
Q 005877          254 --FGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKG  328 (672)
Q Consensus       254 --~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g  328 (672)
                        +.. .-..+.+.-..|.+.--.  ..+|.....++.-+..    .++.++|.++.+.+++.. ++.-...++.+-   
T Consensus       235 lL~q~-~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~---  306 (400)
T COG3071         235 LLQQA-RDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPRLCRLIPRLR---  306 (400)
T ss_pred             HHHHH-hccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChhHHHHHhhcC---
Confidence              000 000111111122222111  2445555555555555    666666666666666654 333111122111   


Q ss_pred             CCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCcc
Q 005877          329 YGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLK  405 (672)
Q Consensus       329 ~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~L~~~y~~g~g~~  405 (672)
                          .+|+.+=++..++.+..  ++|..+..||.++.+    .+.+.+|..+|+.|+... +...+..+|..+..    .
T Consensus       307 ----~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k----~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~----~  374 (400)
T COG3071         307 ----PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK----NKLWGKASEALEAALKLRPSASDYAELADALDQ----L  374 (400)
T ss_pred             ----CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH----hhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH----c
Confidence                23555555555555443  355666666666666    666666666666665543 44555566666665    5


Q ss_pred             CCHHHHHHHHHHHH
Q 005877          406 KNLHMATALYKLVA  419 (672)
Q Consensus       406 ~~~~~A~~~~~~a~  419 (672)
                      ++..+|...+++++
T Consensus       375 g~~~~A~~~r~e~L  388 (400)
T COG3071         375 GEPEEAEQVRREAL  388 (400)
T ss_pred             CChHHHHHHHHHHH
Confidence            66666666665554

>PLN02789 farnesyltranstransferase

Probab=98.96  E-value=7.3e-07  Score=91.09  Aligned_cols=246  Identities=12%  Similarity=0.021  Sum_probs=154.5

Q ss_pred             hhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccC-CHHHHHH
Q 005877          105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQD-MHDKAVK  181 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~-~~~~A~~  181 (672)
                      ..+|.+|..+|+.....                   .+..++|+..+.+++.  +++..+....+.++...+ ++++++.
T Consensus        33 ~~~~~~a~~~~ra~l~~-------------------~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~   93 (320)
T PLN02789         33 TPEFREAMDYFRAVYAS-------------------DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELD   93 (320)
T ss_pred             CHHHHHHHHHHHHHHHc-------------------CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHH
Confidence            46677777777664332                   4567788888888876  678888888888888776 5788888


Q ss_pred             HHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 005877          182 LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRR  261 (672)
Q Consensus       182 ~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~  261 (672)
                      ++++++...+                                                .+..++...+.++...+   ..
T Consensus        94 ~~~~~i~~np------------------------------------------------knyqaW~~R~~~l~~l~---~~  122 (320)
T PLN02789         94 FAEDVAEDNP------------------------------------------------KNYQIWHHRRWLAEKLG---PD  122 (320)
T ss_pred             HHHHHHHHCC------------------------------------------------cchHHhHHHHHHHHHcC---ch
Confidence            8888776443                                                34445555555544331   01


Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcC--CCCCcCC
Q 005877          262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKG--YGVEKKN  335 (672)
Q Consensus       262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g--~g~~~~~  335 (672)
                      ..++++.+++++++.  .+..++...|.++..    .+++++++.++.++++.  .+..+++..|.+....  .+.....
T Consensus       123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~  198 (320)
T PLN02789        123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM  198 (320)
T ss_pred             hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence            135566777776653  466777777777776    67777777777777764  3666777777665431  0111113


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCc-------
Q 005877          336 YTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGL-------  404 (672)
Q Consensus       336 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~-------  404 (672)
                      .+.++++..++++.  ++..+++.++.++...........+|++.+.++.+.  ..+.++..|+.+|..+...       
T Consensus       199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~  278 (320)
T PLN02789        199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDT  278 (320)
T ss_pred             HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhh
Confidence            45677777777765  477777777777765211224455577777776553  3567777788777764321       


Q ss_pred             -------cCCHHHHHHHHHHHHHcCCh
Q 005877          405 -------KKNLHMATALYKLVAERGPW  424 (672)
Q Consensus       405 -------~~~~~~A~~~~~~a~~~~~~  424 (672)
                             ..+.++|..+|+...+.+|.
T Consensus       279 ~~~~~~~~~~~~~a~~~~~~l~~~d~i  305 (320)
T PLN02789        279 VDTLAEELSDSTLAQAVCSELEVADPM  305 (320)
T ss_pred             hhccccccccHHHHHHHHHHHHhhCcH
Confidence                   12446677777766443443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=3.8e-06  Score=87.88  Aligned_cols=435  Identities=12%  Similarity=0.012  Sum_probs=261.3

Q ss_pred             CccccccCCCCCCcccccCCCC--CCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHH--HHhCCChHHHHHHHHHhh
Q 005877           60 ESMTEENLDPGSWSPVFEPSID--PGAINGSYYITISKMMSAVTNGDVRVMEEATSEVES--AAMEGDPHARSVLGFLYG  135 (672)
Q Consensus        60 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~  135 (672)
                      ..+....+++++|.+...+.+.  |+++.+.+-.-++.+.       ...|++|+...++  +...++... +.-+.|..
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq-------~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Y   90 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ-------LDKYEDALKLIKKNGALLVINSFF-FEKAYCEY   90 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh-------hhHHHHHHHHHHhcchhhhcchhh-HHHHHHHH
Confidence            3445556777777766666533  5667777666666553       5789999977777  333344333 67777777


Q ss_pred             cCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhh
Q 005877          136 MGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEEN  215 (672)
Q Consensus       136 ~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  215 (672)
                      .    .+..++|+..++ ..+..+...+-.-|.++.+.++|++|++.|+.+++........        ..+      .+
T Consensus        91 r----lnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~--------~~r------~n  151 (652)
T KOG2376|consen   91 R----LNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE--------ERR------AN  151 (652)
T ss_pred             H----cccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH--------HHH------HH
Confidence            6    888999999998 6666677788888999999999999999999987643221100        000      00


Q ss_pred             hhHhhhccCChHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-------C---------
Q 005877          216 KGALRKSRGEDDEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------G---------  277 (672)
Q Consensus       216 ~~~~~~~~g~~~~Ai~~~~~a--a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~---------  277 (672)
                      +-.+    +--..+ ++.+..  ...+.-+.+|+.+-++...     +++.+|++.+++|.+.       +         
T Consensus       152 l~a~----~a~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~-----gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~  221 (652)
T KOG2376|consen  152 LLAV----AAALQV-QLLQSVPEVPEDSYELLYNTACILIEN-----GKYNQAIELLEKALRICREKLEDEDTNEEEIEE  221 (652)
T ss_pred             HHHH----HHhhhH-HHHHhccCCCcchHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHhhcccccchhhHHH
Confidence            1000    000000 111111  1124678889999999888     4999999999999431       1         


Q ss_pred             -CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCCcCCHH--HHHHHHHHH--
Q 005877          278 -EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL------YSAYNGIGYLYVKGYGVEKKNYT--KAKEYFEKA--  346 (672)
Q Consensus       278 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~~~~~~--~A~~~~~~a--  346 (672)
                       -......|+.++..    .|+.++|...|...+..+.      +.+.++|-.+-..     + ++.  .++..++.-  
T Consensus       222 el~~IrvQlayVlQ~----~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d-----~-~~~d~~~l~~k~~~~~  291 (652)
T KOG2376|consen  222 ELNPIRVQLAYVLQL----QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD-----Q-NYFDGDLLKSKKSQVF  291 (652)
T ss_pred             HHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc-----c-ccCchHHHHHHHHHHH
Confidence             13466788888888    9999999999999887652      2334455443321     1 111  122222211  


Q ss_pred             ----------HhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHH--HHHHHHHHcCCCccCCHHHHH
Q 005877          347 ----------ADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF--YQLAKMFHTGVGLKKNLHMAT  412 (672)
Q Consensus       347 ----------~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~--~~L~~~y~~g~g~~~~~~~A~  412 (672)
                                ....-...+.|.+.+-+.    .+.-+.+.   +..+..  ..+...  .-+-..+..   ....+.+|+
T Consensus       292 ~l~~~~l~~Ls~~qk~~i~~N~~lL~l~----tnk~~q~r---~~~a~lp~~~p~~~~~~ll~~~t~~---~~~~~~ka~  361 (652)
T KOG2376|consen  292 KLAEFLLSKLSKKQKQAIYRNNALLALF----TNKMDQVR---ELSASLPGMSPESLFPILLQEATKV---REKKHKKAI  361 (652)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHH---HHHHhCCccCchHHHHHHHHHHHHH---HHHHHhhhH
Confidence                      111223334455544433    22222222   222221  122211  112222221   122478899


Q ss_pred             HHHHHHHHcCChh---HHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCC
Q 005877          413 ALYKLVAERGPWS---SLSRWALESYLKGDVGKAFLLYS--------RMAELGYEVAQSNAAWILDKYGEGSMCMGESGF  481 (672)
Q Consensus       413 ~~~~~a~~~~~~~---a~~~lg~~~~~~g~~~~A~~~~~--------~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~  481 (672)
                      +++....+..+..   ..+.++......|+++.|++.+.        ...+.++.++..-+...+..        +..+.
T Consensus       362 e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~--------~~~~~  433 (652)
T KOG2376|consen  362 ELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYY--------KIKDN  433 (652)
T ss_pred             HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHH--------hccCC
Confidence            9999988887655   56677778889999999999999        55566666665544433322        11222


Q ss_pred             CCchHhHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCC
Q 005877          482 CTDAERHQCAHSLWWQASEQGN-E-HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLP  557 (672)
Q Consensus       482 ~~~~~~~~~A~~~~~~a~~~~~-~-~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~  557 (672)
                      .....-+++|+.||+....... - ..+-.++..-.    ..|+-++|...+++-++.  ++.+.+..|-..|.     .
T Consensus       434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l----r~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~-----~  504 (652)
T KOG2376|consen  434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL----RHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA-----R  504 (652)
T ss_pred             ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH----hcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH-----h
Confidence            3345568899999996433222 2 22234444444    458999999999999884  67777777776665     3


Q ss_pred             CCHHHHHHHHH
Q 005877          558 LDLHLAKRYYD  568 (672)
Q Consensus       558 ~d~~~A~~~~~  568 (672)
                      -|.++|..+=+
T Consensus       505 ~d~eka~~l~k  515 (652)
T KOG2376|consen  505 LDPEKAESLSK  515 (652)
T ss_pred             cCHHHHHHHhh
Confidence            57777776644

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.91  E-value=5.6e-08  Score=87.64  Aligned_cols=117  Identities=15%  Similarity=0.019  Sum_probs=66.2

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHH
Q 005877          412 TALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ  489 (672)
Q Consensus       412 ~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~  489 (672)
                      ..+|+++++..|.. ...+|..+...|++++|+..|++++..  .+..++.++|.++..                .++++
T Consensus        13 ~~~~~~al~~~p~~-~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----------------~g~~~   75 (144)
T PRK15359         13 EDILKQLLSVDPET-VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM----------------LKEYT   75 (144)
T ss_pred             HHHHHHHHHcCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----------------HhhHH
Confidence            35666666666543 445677777777777777777776544  344555555555544                44555


Q ss_pred             HHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 005877          490 CAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYM  549 (672)
Q Consensus       490 ~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~  549 (672)
                      +|+..|++++.  ++++.+++++|.++.    ..|++++|+..|++|++  ++++.+..++|..
T Consensus        76 ~A~~~y~~Al~l~p~~~~a~~~lg~~l~----~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~  135 (144)
T PRK15359         76 TAINFYGHALMLDASHPEPVYQTGVCLK----MMGEPGLAREAFQTAIKMSYADASWSEIRQNA  135 (144)
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            55555554433  344555556666555    55566666666666544  2455555555543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.91  E-value=2.4e-06  Score=101.96  Aligned_cols=280  Identities=13%  Similarity=0.018  Sum_probs=181.7

Q ss_pred             hhHhhhccCChHHHHHHHHHHHHc----C-------CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc---CC---
Q 005877          216 KGALRKSRGEDDEAFQILEYQAQK----G-------NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---GE---  278 (672)
Q Consensus       216 ~~~~~~~~g~~~~Ai~~~~~aa~~----~-------~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---~~---  278 (672)
                      .+.+....|++++|...++.+.+.    +       .......+|.++...     +++++|..++++++..   ++   
T Consensus       415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~  489 (903)
T PRK04841        415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND-----GDPEEAERLAELALAELPLTWYYS  489 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCccHHH
Confidence            344555666777777766665321    0       123344456666555     4888888888887762   12   


Q ss_pred             -HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877          279 -PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN  349 (672)
Q Consensus       279 -~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~  349 (672)
                       ..+...+|.++..    .+++++|..+++++++.    +.    ..+...+|.++..     .|+++.|..+++++.+.
T Consensus       490 ~~~a~~~lg~~~~~----~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-----~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        490 RIVATSVLGEVHHC----KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-----QGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHH
Confidence             2355677777777    88888888888888743    21    2355677777764     57888888888887653


Q ss_pred             ----CC------HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHcCCCccCCHHHHH
Q 005877          350 ----EE------AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----G---HQKAFYQLAKMFHTGVGLKKNLHMAT  412 (672)
Q Consensus       350 ----~~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~---~~~a~~~L~~~y~~g~g~~~~~~~A~  412 (672)
                          +.      ......+|.++..    .|++++|...+.+++..    +   ...++..++.++..    .++++.|.
T Consensus       561 ~~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~  632 (903)
T PRK04841        561 IEEQHLEQLPMHEFLLRIRAQLLWE----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNAR  632 (903)
T ss_pred             HHHhccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHH
Confidence                11      2234566777777    78888888888887652    1   23455567777776    78888888


Q ss_pred             HHHHHHHHcCC-----hhHHH---H-HHHHHHhcCCHHHHHHHHHHHHHcCC--H----HHHHHHHHHHHHhCCCCcccC
Q 005877          413 ALYKLVAERGP-----WSSLS---R-WALESYLKGDVGKAFLLYSRMAELGY--E----VAQSNAAWILDKYGEGSMCMG  477 (672)
Q Consensus       413 ~~~~~a~~~~~-----~~a~~---~-lg~~~~~~g~~~~A~~~~~~a~~~g~--~----~a~~nla~~l~~~~~~~~~~~  477 (672)
                      ..+.++.....     .....   . ....+...|+.++|..++........  .    ....+++.++..         
T Consensus       633 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~---------  703 (903)
T PRK04841        633 RYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL---------  703 (903)
T ss_pred             HHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH---------
Confidence            88888855321     11111   1 12334457888888888766543221  1    113456666655         


Q ss_pred             CCCCCCchHhHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877          478 ESGFCTDAERHQCAHSLWWQASEQ----GN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ  537 (672)
Q Consensus       478 ~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~  537 (672)
                             .+++++|...++++...    +.    ..++..+|.++.    ..++.++|..++++|++.
T Consensus       704 -------~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~----~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        704 -------LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW----QQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             -------cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHH
Confidence                   55778888888876442    22    346778999999    899999999999999875

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.88  E-value=2e-05  Score=83.47  Aligned_cols=400  Identities=15%  Similarity=0.093  Sum_probs=218.6

Q ss_pred             CchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHH
Q 005877           86 NGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQ  161 (672)
Q Consensus        86 ~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~  161 (672)
                      .++|..++..+.       .+.|.+.++..++..  .+.+++...+.|.....    .++-++|..+...++.  ....-
T Consensus         8 ~~lF~~~lk~yE-------~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~----lg~~~ea~~~vr~glr~d~~S~v   76 (700)
T KOG1156|consen    8 NALFRRALKCYE-------TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNC----LGKKEEAYELVRLGLRNDLKSHV   76 (700)
T ss_pred             HHHHHHHHHHHH-------HHHHHhHHHHHHHHHHhCCccchhHHhccchhhc----ccchHHHHHHHHHHhccCcccch
Confidence            456666666553       578888888888844  35788999999988776    8899999999999887  45667


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCC
Q 005877          162 SKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN  241 (672)
Q Consensus       162 a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~  241 (672)
                      .+..+|.++...++|++|+++|+.|+...++                                                |
T Consensus        77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------------------------------------------------N  108 (700)
T KOG1156|consen   77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKD------------------------------------------------N  108 (700)
T ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------------------------------------------------c
Confidence            8888999999999999999999999875433                                                3


Q ss_pred             HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----CH
Q 005877          242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----LY  315 (672)
Q Consensus       242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~  315 (672)
                      ...+..|+.+-.+.     +|++-....=.+.++  ++.-..+..++..+.-    .+++..|....+...+..    ++
T Consensus       109 ~qilrDlslLQ~Qm-----Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L----~g~y~~A~~il~ef~~t~~~~~s~  179 (700)
T KOG1156|consen  109 LQILRDLSLLQIQM-----RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL----LGEYKMALEILEEFEKTQNTSPSK  179 (700)
T ss_pred             HHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccCCCH
Confidence            33333333333332     233332222222222  1222222333333333    445555544444333221    11


Q ss_pred             HHH-HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHH
Q 005877          316 SAY-NGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFY  392 (672)
Q Consensus       316 ~a~-~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~  392 (672)
                      .-+ .....+|....-.+.+..++|++.+..--..  +.-.....-|.+++.    .+++++|+..|...+..++....+
T Consensus       180 ~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k----l~~lEeA~~~y~~Ll~rnPdn~~Y  255 (700)
T KOG1156|consen  180 EDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMK----LGQLEEAVKVYRRLLERNPDNLDY  255 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH----HhhHHhHHHHHHHHHhhCchhHHH
Confidence            111 1111122111001123455555554432211  112222334667777    888999999999888877655545


Q ss_pred             HHHHHHHcCCCccCCHHHHH-HHHHHHHHcCCh-hHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHh
Q 005877          393 QLAKMFHTGVGLKKNLHMAT-ALYKLVAERGPW-SSLSRWALESYLKGDVGKAF-LLYSRMAELGYEVAQSNAAWILDKY  469 (672)
Q Consensus       393 ~L~~~y~~g~g~~~~~~~A~-~~~~~a~~~~~~-~a~~~lg~~~~~~g~~~~A~-~~~~~a~~~g~~~a~~nla~~l~~~  469 (672)
                      +.+..-..|  .-.+.-+++ ..|....+.-+- ....+++.....-.++.... .++..-++.|-+..-.++-.+|.. 
T Consensus       256 y~~l~~~lg--k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~-  332 (700)
T KOG1156|consen  256 YEGLEKALG--KIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD-  332 (700)
T ss_pred             HHHHHHHHH--HHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc-
Confidence            444332221  134555555 666655554432 22333333333223333333 334444566655555555444432 


Q ss_pred             CCCCcccCCCCCCCchHhHHHHHHHHHHHH------------hCCCHHH----HHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005877          470 GEGSMCMGESGFCTDAERHQCAHSLWWQAS------------EQGNEHA----ALLIGDAYYYGRGTQRDYERAAEAYMH  533 (672)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~------------~~~~~~a----~~~lG~~y~~g~g~~~d~~~A~~~~~~  533 (672)
                                  +....=.++=+..|....            ++.+|.+    ++.++.-|.    ..++++.|..|+..
T Consensus       333 ------------p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D----~~g~~~~A~~yId~  396 (700)
T KOG1156|consen  333 ------------PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD----KLGDYEVALEYIDL  396 (700)
T ss_pred             ------------hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH----HcccHHHHHHHHHH
Confidence                        000001111111222111            1123332    235666666    78999999999999


Q ss_pred             HHhcCC--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC-CCCcch
Q 005877          534 ARSQSN--AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD-PAAKLP  580 (672)
Q Consensus       534 A~~~~~--~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~~~~  580 (672)
                      |++.-.  ++-+..=|.|+.|    .|+++.|..|.+.|.++| +|..+.
T Consensus       397 AIdHTPTliEly~~KaRI~kH----~G~l~eAa~~l~ea~elD~aDR~IN  442 (700)
T KOG1156|consen  397 AIDHTPTLIELYLVKARIFKH----AGLLDEAAAWLDEAQELDTADRAIN  442 (700)
T ss_pred             HhccCchHHHHHHHHHHHHHh----cCChHHHHHHHHHHHhccchhHHHH
Confidence            987532  3333344678877    889999999999999997 555543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.84  E-value=1.5e-05  Score=80.09  Aligned_cols=242  Identities=12%  Similarity=0.010  Sum_probs=141.5

Q ss_pred             cCCHHHHHHHHHHHHHc-CCHHHHHH--HHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchh
Q 005877          296 ERNYTKALEWLTHAARQ-QLYSAYNG--IGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKR  370 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~-~~~~a~~~--Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~  370 (672)
                      .+|++.+-.|+.++.+. ++..-...  ...+...     ++|+..|..-..++.++.  ++.+..-.-.+|..    .|
T Consensus       131 rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-----~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~----~g  201 (400)
T COG3071         131 RGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-----RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIR----LG  201 (400)
T ss_pred             cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHH----hc
Confidence            45555555555555554 22222222  2222222     345555555555555543  45555555555555    55


Q ss_pred             cHHHHHHHHHHHHHcC---CHHH-----HHHHHHHHHcCCCccCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHhcCCH
Q 005877          371 DVKLACKYFLVAANAG---HQKA-----FYQLAKMFHTGVGLKKNLHMATALYKLVA--ERGPWSSLSRWALESYLKGDV  440 (672)
Q Consensus       371 ~~~~A~~~~~~A~~~~---~~~a-----~~~L~~~y~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~g~~  440 (672)
                      ++........+..+.+   +++.     +-+.|.+-..+  ..++.+.=..+.+..-  .+.++.....++.-+...|++
T Consensus       202 ~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~--~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~  279 (400)
T COG3071         202 AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR--DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDH  279 (400)
T ss_pred             cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh--ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCCh
Confidence            5555555555544422   2211     11222221110  0111111222444331  223466666777778889999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCC
Q 005877          441 GKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGR  518 (672)
Q Consensus       441 ~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~  518 (672)
                      ++|.++.+.+++.+...-   +-..+...           .   .++...=++..++.+  .++++..+.+||.+++   
T Consensus       280 ~~A~~~i~~~Lk~~~D~~---L~~~~~~l-----------~---~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~---  339 (400)
T COG3071         280 DEAQEIIEDALKRQWDPR---LCRLIPRL-----------R---PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL---  339 (400)
T ss_pred             HHHHHHHHHHHHhccChh---HHHHHhhc-----------C---CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHH---
Confidence            999999999988764433   23333221           1   222333333333322  4566889999999999   


Q ss_pred             CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877          519 GTQRDYERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV  573 (672)
Q Consensus       519 g~~~d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  573 (672)
                       +.+.+.+|..+++.|++. .+......||..++.    .++..+|-+.++.++-+
T Consensus       340 -k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~----~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         340 -KNKLWGKASEALEAALKLRPSASDYAELADALDQ----LGEPEEAEQVRREALLL  390 (400)
T ss_pred             -HhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHH
Confidence             999999999999999886 677888999999998    89999999999999855

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=4.1e-07  Score=91.07  Aligned_cols=259  Identities=17%  Similarity=0.047  Sum_probs=156.5

Q ss_pred             cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhH
Q 005877          141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA  218 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  218 (672)
                      .++|..|+..|..|++  +++...+.+-+..++..++++.|...+++.++..+...                ......+.
T Consensus        62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~----------------k~~~r~~~  125 (486)
T KOG0550|consen   62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS----------------KGQLREGQ  125 (486)
T ss_pred             HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc----------------ccccchhh
Confidence            6677777777777776  46666777777777777777777666665544221100                00111222


Q ss_pred             hhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHcCC
Q 005877          219 LRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-----PQSMEFLGEIYARGA  293 (672)
Q Consensus       219 ~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~Lg~~y~~g~  293 (672)
                      .+...++..+|.+.++      +..++                ....|+..+++.+....     ..+...-+.++..  
T Consensus       126 c~~a~~~~i~A~~~~~------~~~~~----------------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~--  181 (486)
T KOG0550|consen  126 CHLALSDLIEAEEKLK------SKQAY----------------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAF--  181 (486)
T ss_pred             hhhhhHHHHHHHHHhh------hhhhh----------------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh--
Confidence            2233333333333332      11110                12223333333333221     2334444555555  


Q ss_pred             CCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCH--------------HHHHH
Q 005877          294 GVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA--------------GGHYN  357 (672)
Q Consensus       294 g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~--------------~a~~~  357 (672)
                        .+++..|...--..++.+  +.++++.=|.++..     ..+.++|+..|++++..+-.              ..+-.
T Consensus       182 --~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy-----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~  254 (486)
T KOG0550|consen  182 --LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY-----NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE  254 (486)
T ss_pred             --cccchhHHHHHHHHHhcccchhHHHHhccccccc-----ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence              677777766655555443  56666666665554     34777888888888766411              11223


Q ss_pred             HHHHHHcCCCchhcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHH
Q 005877          358 LGVMYYKGIGVKRDVKLACKYFLVAANAGH------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR  429 (672)
Q Consensus       358 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~  429 (672)
                      -|....+    .|++.+|.+.|..|+..++      ...+.+.+.+...    .++.++|+.-.+.+++.++  ..++..
T Consensus       255 ~gN~~fk----~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r----Lgrl~eaisdc~~Al~iD~syikall~  326 (486)
T KOG0550|consen  255 RGNDAFK----NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR----LGRLREAISDCNEALKIDSSYIKALLR  326 (486)
T ss_pred             hhhhHhh----ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc----cCCchhhhhhhhhhhhcCHHHHHHHHH
Confidence            3444455    7899999999999987542      3455666666665    8899999999999998885  467888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          430 WALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       430 lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      .|.++...+++++|+..|+++.+..
T Consensus       327 ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  327 RANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8999999999999999999997764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=0.00011  Score=77.20  Aligned_cols=410  Identities=14%  Similarity=0.052  Sum_probs=229.8

Q ss_pred             CCChhhHHHHHHHHHHHHh--CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhccCCHH
Q 005877          102 NGDVRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAA--EGGNIQSKMAVAYTYLRQDMHD  177 (672)
Q Consensus       102 ~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~--~~~~~~a~~~Lg~~y~~~~~~~  177 (672)
                      .+..++|++|++...+...  ++++++..--=.+...    ...|++|+..-++--  ..++.- .+.-++|.++.+..+
T Consensus        22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq----~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yrlnk~D   96 (652)
T KOG2376|consen   22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ----LDKYEDALKLIKKNGALLVINSF-FFEKAYCEYRLNKLD   96 (652)
T ss_pred             hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh----hhHHHHHHHHHHhcchhhhcchh-hHHHHHHHHHcccHH
Confidence            4557899999999999544  4667776543333333    557888885554421  222222 278899999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHhc
Q 005877          178 KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN--AGAMYKIGLFYYFG  255 (672)
Q Consensus       178 ~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~--~~a~~~Lg~~y~~~  255 (672)
                      +|++.++-+ +                  +....+..-.+.+.+++|+|++|+..|+..++.+.  .+.......+-.. 
T Consensus        97 ealk~~~~~-~------------------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-  156 (652)
T KOG2376|consen   97 EALKTLKGL-D------------------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-  156 (652)
T ss_pred             HHHHHHhcc-c------------------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-
Confidence            999999822 1                  11112333467888999999999999999987753  3332222221110 


Q ss_pred             CCCcccCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-------C----------CH
Q 005877          256 LRGLRRDRTKALMWFSKAAD---KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-------Q----------LY  315 (672)
Q Consensus       256 ~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~----------~~  315 (672)
                            - .....+. +.+.   .+.-...|+.+-++..    .++|.+|++.+++|...       +          ..
T Consensus       157 ------a-~l~~~~~-q~v~~v~e~syel~yN~Ac~~i~----~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~  224 (652)
T KOG2376|consen  157 ------A-ALQVQLL-QSVPEVPEDSYELLYNTACILIE----NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELN  224 (652)
T ss_pred             ------H-hhhHHHH-HhccCCCcchHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHH
Confidence                  0 0011122 2222   2456788999999998    99999999999999421       1          11


Q ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCH------HHHHHHHHHHHcCCCch---------hcHHHHHHHHH
Q 005877          316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA------GGHYNLGVMYYKGIGVK---------RDVKLACKYFL  380 (672)
Q Consensus       316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~------~a~~~Lg~~y~~g~g~~---------~~~~~A~~~~~  380 (672)
                      .....|+.++..     .|+..+|...|...+..+.+      .+.+||-.+-....-..         ....-+..+..
T Consensus       225 ~IrvQlayVlQ~-----~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~  299 (652)
T KOG2376|consen  225 PIRVQLAYVLQL-----QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLS  299 (652)
T ss_pred             HHHHHHHHHHHH-----hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHH
Confidence            235567777775     67999999999998876432      23444443321100000         01111111222


Q ss_pred             HHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHH-
Q 005877          381 VAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSS--LSRWALESYLKGDVGKAFLLYSRMAELGYEV-  457 (672)
Q Consensus       381 ~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a--~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~-  457 (672)
                      +.........+.|.+.+-+.    .+..+.+.+.....-...|...  .............+.+|..++....+..... 
T Consensus       300 ~Ls~~qk~~i~~N~~lL~l~----tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s  375 (652)
T KOG2376|consen  300 KLSKKQKQAIYRNNALLALF----TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS  375 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh
Confidence            22222223334444444332    2233333332222222222211  1122222333336888888888887765333 


Q ss_pred             --HHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHH--------HHHhCCCHHHHHHHHHHHHhCCCCC----CC
Q 005877          458 --AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW--------QASEQGNEHAALLIGDAYYYGRGTQ----RD  523 (672)
Q Consensus       458 --a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--------~a~~~~~~~a~~~lG~~y~~g~g~~----~d  523 (672)
                        ...-.+.+...                .++++.|++.+.        ...+..+..+.+..+..++++.+..    .-
T Consensus       376 ~~v~L~~aQl~is----------------~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~v  439 (652)
T KOG2376|consen  376 KVVLLLRAQLKIS----------------QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAV  439 (652)
T ss_pred             HHHHHHHHHHHHh----------------cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHH
Confidence              33333333333                678888998888        4445555555564444444433211    12


Q ss_pred             HHHHHHHHHHHHhcC-CHHHH-HHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          524 YERAAEAYMHARSQS-NAQAM-FNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       524 ~~~A~~~~~~A~~~~-~~~a~-~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      +++|+.||+...... .-..+ ..++.....    -|+.++|...+++-++.+|..
T Consensus       440 l~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr----~G~~~ea~s~leel~k~n~~d  491 (652)
T KOG2376|consen  440 LDSAIKWWRKQQTGSIALLSLMREAAEFKLR----HGNEEEASSLLEELVKFNPND  491 (652)
T ss_pred             HHHHHHHHHHhcccchHHHhHHHHHhHHHHh----cCchHHHHHHHHHHHHhCCch
Confidence            567777777764322 11222 223333333    389999999999999987654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.80  E-value=2.6e-07  Score=88.00  Aligned_cols=120  Identities=13%  Similarity=0.136  Sum_probs=86.3

Q ss_pred             cCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCC
Q 005877          405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFC  482 (672)
Q Consensus       405 ~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~  482 (672)
                      .++.++++..++++++.+|  ..++..+|.++...|++++|+..|+++++.                             
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----------------------------  102 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----------------------------  102 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------------
Confidence            4556666666666666553  445666666666666666666666665543                             


Q ss_pred             CchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC
Q 005877          483 TDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRD--YERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPL  558 (672)
Q Consensus       483 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d--~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~  558 (672)
                                       .+++++.++.+|.+++.   ..++  +++|.+.++++++.  +++.++++||..+..    .|
T Consensus       103 -----------------~P~~~~~~~~lA~aL~~---~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~----~g  158 (198)
T PRK10370        103 -----------------RGENAELYAALATVLYY---QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM----QA  158 (198)
T ss_pred             -----------------CCCCHHHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH----cC
Confidence                             35567777778876421   3344  68999999999774  789999999999987    89


Q ss_pred             CHHHHHHHHHHHHhcCCCC
Q 005877          559 DLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       559 d~~~A~~~~~~A~~~~~~~  577 (672)
                      |+++|+.+|+++++++|..
T Consensus       159 ~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        159 DYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             CHHHHHHHHHHHHhhCCCC
Confidence            9999999999999997664

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.80  E-value=1.9e-07  Score=84.10  Aligned_cols=117  Identities=13%  Similarity=0.039  Sum_probs=67.2

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHH
Q 005877          341 EYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV  418 (672)
Q Consensus       341 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a  418 (672)
                      .+|+++++.+ |...+.+|..+..    .|++++|+.+|++++..  .+..+++.+|.++..    .+++++|+..|+++
T Consensus        14 ~~~~~al~~~-p~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~y~~A   84 (144)
T PRK15359         14 DILKQLLSVD-PETVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM----LKEYTTAINFYGHA   84 (144)
T ss_pred             HHHHHHHHcC-HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----HhhHHHHHHHHHHH
Confidence            4555555544 2234455666655    56666666666666553  345666666666655    56666666666666


Q ss_pred             HHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877          419 AERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL  466 (672)
Q Consensus       419 ~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l  466 (672)
                      ++..|  +.+++++|.++...|++++|+..|+++++.  +++....+.+.+.
T Consensus        85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359         85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            65553  445666666666666666666666666443  3555555555443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.77  E-value=1.8e-05  Score=85.84  Aligned_cols=223  Identities=17%  Similarity=0.103  Sum_probs=113.1

Q ss_pred             hhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcC
Q 005877          216 KGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-EPQSMEFLGEIYARG  292 (672)
Q Consensus       216 ~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g  292 (672)
                      .+.++.++|+.++|...|+..++.  .+...+..|..+..........+.+.-.+.|++....- ...+...+...+..|
T Consensus        44 rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g  123 (517)
T PF12569_consen   44 RAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG  123 (517)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCH
Confidence            444455555555555555554444  24444444444441111001124555666666554321 112222333333331


Q ss_pred             CCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh---C------------CCH----H
Q 005877          293 AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD---N------------EEA----G  353 (672)
Q Consensus       293 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~---~------------~~~----~  353 (672)
                         ..--+.+..|+...+..|.|.....|-.+|..     .....-..+.+..-..   .            ..|    -
T Consensus       124 ---~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d-----~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw  195 (517)
T PF12569_consen  124 ---DEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD-----PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLW  195 (517)
T ss_pred             ---HHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC-----hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHH
Confidence               12234556667777777777777777777742     1011111111111110   0            011    2


Q ss_pred             HHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHH--
Q 005877          354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSR--  429 (672)
Q Consensus       354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~--  429 (672)
                      +++.|++.|..    .|++++|+++..+|++..  .++.+..-|.++.+    .|++.+|..+++.|-+.+..+-+.+  
T Consensus       196 ~~~~lAqhyd~----~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh----~G~~~~Aa~~~~~Ar~LD~~DRyiNsK  267 (517)
T PF12569_consen  196 TLYFLAQHYDY----LGDYEKALEYIDKAIEHTPTLVELYMTKARILKH----AGDLKEAAEAMDEARELDLADRYINSK  267 (517)
T ss_pred             HHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhCChhhHHHHHH
Confidence            34566666666    667777777777776643  45666666777766    6777777777777766665543332  


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          430 WALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       430 lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      .+..+.+.|+.++|..........+
T Consensus       268 ~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  268 CAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            3444556666666666666554443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=3.4e-05  Score=75.90  Aligned_cols=401  Identities=13%  Similarity=0.026  Sum_probs=247.0

Q ss_pred             ccccCCCCCCcccccCCCCCCCcCc-hHH--HHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCC--hHHHHHHHHHhhcC
Q 005877           63 TEENLDPGSWSPVFEPSIDPGAING-SYY--ITISKMMSAVTNGDVRVMEEATSEVESAAMEGD--PHARSVLGFLYGMG  137 (672)
Q Consensus        63 ~~~~~~~~~a~~~~~~~~~~~~~~a-~~~--~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~G  137 (672)
                      .....||..|+..++...+.+..+- ...  +|.+++       ..|||++|+..|+-..+.++  .+...+|+-++.. 
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-------hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-  103 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-------HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-  103 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-------hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-
Confidence            3446799999999998887765443 333  333433       38999999999999776644  5667889999988 


Q ss_pred             CcccCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhh
Q 005877          138 MMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENK  216 (672)
Q Consensus       138 ~g~~~d~~~A~~~~~~A~~-~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  216 (672)
                         .+.|.+|...-.++.+ +=...-++.|+..+   +|-++-. .|..-+...                   .+-...+
T Consensus       104 ---Lg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl---ndEk~~~-~fh~~LqD~-------------------~EdqLSL  157 (557)
T KOG3785|consen  104 ---LGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL---NDEKRIL-TFHSSLQDT-------------------LEDQLSL  157 (557)
T ss_pred             ---HHHHHHHHHHHhhCCCChHHHHHHHHHHHHh---CcHHHHH-HHHHHHhhh-------------------HHHHHhH
Confidence               8899999888777655 22335555555544   4433333 333222210                   0112347


Q ss_pred             hHhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcC
Q 005877          217 GALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARG  292 (672)
Q Consensus       217 ~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g  292 (672)
                      +.+...+-.|++||+.|++....+  .......++.+|+...     =++-+.+.+.-.+.+  +.+-|....+-...+ 
T Consensus       158 AsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD-----Yydvsqevl~vYL~q~pdStiA~NLkacn~fR-  231 (557)
T KOG3785|consen  158 ASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD-----YYDVSQEVLKVYLRQFPDSTIAKNLKACNLFR-  231 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc-----hhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhh-
Confidence            778888889999999999975442  4556678899998872     345555555555553  556666655555444 


Q ss_pred             CCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcH
Q 005877          293 AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDV  372 (672)
Q Consensus       293 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~  372 (672)
                         .=+-..|..-.+..++.++.+ +-....+..+..-+-+ +-+.|++.+--.+ .-.|+|..||...|++    ++|.
T Consensus       232 ---l~ngr~ae~E~k~ladN~~~~-~~f~~~l~rHNLVvFr-ngEgALqVLP~L~-~~IPEARlNL~iYyL~----q~dV  301 (557)
T KOG3785|consen  232 ---LINGRTAEDEKKELADNIDQE-YPFIEYLCRHNLVVFR-NGEGALQVLPSLM-KHIPEARLNLIIYYLN----QNDV  301 (557)
T ss_pred             ---hhccchhHHHHHHHHhccccc-chhHHHHHHcCeEEEe-CCccHHHhchHHH-hhChHhhhhheeeecc----cccH
Confidence               223334444445444443211 2223334444333323 5556666554333 3479999999999999    9999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHc---CCCccCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHhcCCHHHHHH
Q 005877          373 KLACKYFLVAANAGHQKAFYQLAKMFHT---GVGLKKNLHMATALYKLVAERG----PWSSLSRWALESYLKGDVGKAFL  445 (672)
Q Consensus       373 ~~A~~~~~~A~~~~~~~a~~~L~~~y~~---g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~g~~~~A~~  445 (672)
                      ++|+...+. +++..|.-+.--|.++..   ..|.....+-|...|+.+-+.+    ....--.++..++...++++-+.
T Consensus       302 qeA~~L~Kd-l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~  380 (557)
T KOG3785|consen  302 QEAISLCKD-LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT  380 (557)
T ss_pred             HHHHHHHhh-cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            999987765 333344333333333221   1244556677777777664332    22233445555666667777776


Q ss_pred             HHHHHH--HcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC-HHHH--HHHHHHHHhCCCC
Q 005877          446 LYSRMA--ELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN-EHAA--LLIGDAYYYGRGT  520 (672)
Q Consensus       446 ~~~~a~--~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~a~--~~lG~~y~~g~g~  520 (672)
                      ++...-  =.++..-..|+|....-                .+++.+|.+++-+...++. .+..  ..|+.||.    .
T Consensus       381 YlnSi~sYF~NdD~Fn~N~AQAk~a----------------tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi----~  440 (557)
T KOG3785|consen  381 YLNSIESYFTNDDDFNLNLAQAKLA----------------TGNYVEAEELFIRISGPEIKNKILYKSMLARCYI----R  440 (557)
T ss_pred             HHHHHHHHhcCcchhhhHHHHHHHH----------------hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHH----h
Confidence            665432  12566667788877665                5678889888887655542 2222  38999999    7


Q ss_pred             CCCHHHHHHHHHHH
Q 005877          521 QRDYERAAEAYMHA  534 (672)
Q Consensus       521 ~~d~~~A~~~~~~A  534 (672)
                      .+.++.|-..+-+-
T Consensus       441 nkkP~lAW~~~lk~  454 (557)
T KOG3785|consen  441 NKKPQLAWDMMLKT  454 (557)
T ss_pred             cCCchHHHHHHHhc
Confidence            88888887776553

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=3.5e-06  Score=84.54  Aligned_cols=254  Identities=15%  Similarity=0.017  Sum_probs=187.6

Q ss_pred             hhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877          105 VRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV  180 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~  180 (672)
                      ..+|.+|+..|..|++.  .++..+..-+..|..    .+++++|..-.++.++  +|....+...+.++...++..+|-
T Consensus        62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~----~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~  137 (486)
T KOG0550|consen   62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMM----LGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE  137 (486)
T ss_pred             HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHH----HHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence            57889999999998765  677788888888877    7889999998888876  578889999999999988888887


Q ss_pred             HHHHHHH-----HHHHhh---hhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005877          181 KLYAELA-----EIAVNS---FLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGL  250 (672)
Q Consensus       181 ~~y~~a~-----~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~  250 (672)
                      ..|+..-     ...+..   .......|..-      .....+..++...+++++|+..--...+.  .+.++.+.-|.
T Consensus       138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~------~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~  211 (486)
T KOG0550|consen  138 EKLKSKQAYKAANALPTLEKLAPSHSREPACF------KAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL  211 (486)
T ss_pred             HHhhhhhhhHHhhhhhhhhcccccccCCchhh------HHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence            6666211     100000   00000001001      11223566777889999888776665444  58999999999


Q ss_pred             HHHhcCCCcccCHHHHHHHHHHHHHcCCH--------------HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---
Q 005877          251 FYYFGLRGLRRDRTKALMWFSKAADKGEP--------------QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ---  313 (672)
Q Consensus       251 ~y~~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---  313 (672)
                      +++..+     +.++|+..|++++..+-.              ...-.-|....+    .|++.+|.+.|..++..+   
T Consensus       212 ~~yy~~-----~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~E~Yteal~idP~n  282 (486)
T KOG0550|consen  212 CLYYND-----NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAYECYTEALNIDPSN  282 (486)
T ss_pred             cccccc-----chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHHHHHHHhhcCCccc
Confidence            998884     999999999999985421              222333444455    799999999999999753   


Q ss_pred             ---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC
Q 005877          314 ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG  386 (672)
Q Consensus       314 ---~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  386 (672)
                         ++..+.+.+.+...     .|+..+|+.--..++..+  ...++..-|.||+.    .+++++|++.|+++.+..
T Consensus       283 ~~~naklY~nra~v~~r-----Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~----le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  283 KKTNAKLYGNRALVNIR-----LGRLREAISDCNEALKIDSSYIKALLRRANCHLA----LEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             cchhHHHHHHhHhhhcc-----cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhc
Confidence               44456666666654     568999999999999886  57788899999999    999999999999998854

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.74  E-value=1.8e-06  Score=97.73  Aligned_cols=213  Identities=15%  Similarity=0.077  Sum_probs=158.9

Q ss_pred             hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhcc
Q 005877          120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS  197 (672)
Q Consensus       120 ~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~  197 (672)
                      ++++..++..|..+|..    .+++++|+..++.+.+  ++.+..++.+|.++.+.+++.++.-.  .+++..       
T Consensus        27 ~p~n~~a~~~Li~~~~~----~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-------   93 (906)
T PRK14720         27 SLSKFKELDDLIDAYKS----ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF-------   93 (906)
T ss_pred             CcchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-------
Confidence            45788999999999977    8899999999998776  68889999999999999888777655  443321       


Q ss_pred             CCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHH-HHHc-CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 005877          198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY-QAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD  275 (672)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~-aa~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~  275 (672)
                                             ....++ .+++++-. ..+- .+..|++.||.+|-..     ++.++|+..|+++++
T Consensus        94 -----------------------~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~-----g~~~ka~~~yer~L~  144 (906)
T PRK14720         94 -----------------------SQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKL-----NENKKLKGVWERLVK  144 (906)
T ss_pred             -----------------------ccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHc-----CChHHHHHHHHHHHh
Confidence                                   122233 44444443 3333 3667999999999877     499999999999987


Q ss_pred             --cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC---
Q 005877          276 --KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE---  350 (672)
Q Consensus       276 --~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~---  350 (672)
                        +.++.++.++|..|..    . |.++|+.++.+|++.            +..     .+.+.++.+++++.++.+   
T Consensus       145 ~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~~------------~i~-----~kq~~~~~e~W~k~~~~~~~d  202 (906)
T PRK14720        145 ADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIYR------------FIK-----KKQYVGIEEIWSKLVHYNSDD  202 (906)
T ss_pred             cCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHHH------------HHh-----hhcchHHHHHHHHHHhcCccc
Confidence              4789999999999998    7 999999999999875            211     124555555555555432   


Q ss_pred             -------------------CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc
Q 005877          351 -------------------EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHT  400 (672)
Q Consensus       351 -------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~  400 (672)
                                         ..+.+.-|=..|..    .+++++++.+++++++..  +..+.+.|+.+|..
T Consensus       203 ~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~----~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        203 FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA----LEDWDEVIYILKKILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             chHHHHHHHHHHhhhccchhHHHHHHHHHHHhh----hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence                               22333344466777    789999999999998854  66788888888764

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.73  E-value=6.2e-07  Score=95.88  Aligned_cols=210  Identities=20%  Similarity=0.239  Sum_probs=174.8

Q ss_pred             hhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHc
Q 005877          213 EENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD-KGEPQSMEFLGEIYAR  291 (672)
Q Consensus       213 ~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~  291 (672)
                      ...++.++...|-...|+.++++.      ...-....+|...     ++..+|.....+-++ +.++..+-.||++..+
T Consensus       401 q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~l-----g~~~kaeei~~q~lek~~d~~lyc~LGDv~~d  469 (777)
T KOG1128|consen  401 QRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLL-----GQHGKAEEINRQELEKDPDPRLYCLLGDVLHD  469 (777)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHh-----cccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence            345788889999999999999973      4445555666665     388899998888888 6789999999999988


Q ss_pred             CCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCch
Q 005877          292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVK  369 (672)
Q Consensus       292 g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~  369 (672)
                          +.-+++|.++.+.--    ..|+..+|.....     .++++++.+.|+.+.+++  ....+|.+|.+..+    .
T Consensus       470 ----~s~yEkawElsn~~s----arA~r~~~~~~~~-----~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----l  532 (777)
T KOG1128|consen  470 ----PSLYEKAWELSNYIS----ARAQRSLALLILS-----NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----L  532 (777)
T ss_pred             ----hHHHHHHHHHhhhhh----HHHHHhhcccccc-----chhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----H
Confidence                777888888776543    3366667765543     459999999999998875  78999999999999    9


Q ss_pred             hcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHH
Q 005877          370 RDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFL  445 (672)
Q Consensus       370 ~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~  445 (672)
                      ++++.|.+.|...+.  +++.++++||+..|..    .++-.+|...+++|++-+  +|...-+.-.+....|.+++|++
T Consensus       533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~  608 (777)
T KOG1128|consen  533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK  608 (777)
T ss_pred             hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence            999999999999875  6799999999999997    899999999999998766  77777777777888999999999


Q ss_pred             HHHHHHHcC
Q 005877          446 LYSRMAELG  454 (672)
Q Consensus       446 ~~~~a~~~g  454 (672)
                      .|.+.+++.
T Consensus       609 A~~rll~~~  617 (777)
T KOG1128|consen  609 AYHRLLDLR  617 (777)
T ss_pred             HHHHHHHhh
Confidence            999987663

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=5.3e-06  Score=79.64  Aligned_cols=295  Identities=14%  Similarity=0.074  Sum_probs=190.3

Q ss_pred             hhhHHHHHHHHHHHHh--CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCHHHHH
Q 005877          105 VRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV  180 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~~~~~~~A~  180 (672)
                      ..+|..|++.+..-.+  +.+-.+...||.+|..    .+++..|..+|++....  ......+.-+....+.+.+..|+
T Consensus        23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~----~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYR----LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            5678888888887443  3467788899999988    88999999999987663  44455555566677778888887


Q ss_pred             HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 005877          181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR  260 (672)
Q Consensus       181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~  260 (672)
                      .....+.+...                +.+....-.+.+..+.+++..+..+.++....++++...+.|-+.+..     
T Consensus        99 rV~~~~~D~~~----------------L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke-----  157 (459)
T KOG4340|consen   99 RVAFLLLDNPA----------------LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE-----  157 (459)
T ss_pred             HHHHHhcCCHH----------------HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc-----
Confidence            77665543210                000111124566777888888888888887778888888888888777     


Q ss_pred             cCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCC-CcC
Q 005877          261 RDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGV-EKK  334 (672)
Q Consensus       261 ~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~-~~~  334 (672)
                      ++++.|++-|+.|.+-+  +|...++++.+..+    .+++..|+++....++.|   +|+  .++|+.-. |..+ ..|
T Consensus       158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy~----~~qyasALk~iSEIieRG~r~HPE--lgIGm~te-giDvrsvg  230 (459)
T KOG4340|consen  158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS----SRQYASALKHISEIIERGIRQHPE--LGIGMTTE-GIDVRSVG  230 (459)
T ss_pred             ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh----hhhHHHHHHHHHHHHHhhhhcCCc--cCccceec-cCchhccc
Confidence            48999999999888753  67777888888887    888999998888888765   222  23333221 1000 001


Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH----HHcCCHHHHHHHHHHHHcCCCccCCHHH
Q 005877          335 NYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA----ANAGHQKAFYQLAKMFHTGVGLKKNLHM  410 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A----~~~~~~~a~~~L~~~y~~g~g~~~~~~~  410 (672)
                      |.   +..    .+.+..++.+.-+-++.+    .+|++.|.+.+...    -+.-+|....|++.+-.+     +++..
T Consensus       231 Nt---~~l----h~Sal~eAfNLKaAIeyq----~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-----~~p~~  294 (459)
T KOG4340|consen  231 NT---LVL----HQSALVEAFNLKAAIEYQ----LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-----ARPTE  294 (459)
T ss_pred             ch---HHH----HHHHHHHHhhhhhhhhhh----cccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-----CCccc
Confidence            11   111    111223444444556666    77887776655432    112267778888877654     44444


Q ss_pred             HHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHH
Q 005877          411 ATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLY  447 (672)
Q Consensus       411 A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~  447 (672)
                      ..+-++-.++..  |++...++-.+|.+..=++-|...+
T Consensus       295 g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL  333 (459)
T KOG4340|consen  295 GFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL  333 (459)
T ss_pred             cHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence            444455555555  5677888888888766555555544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.72  E-value=4.9e-07  Score=91.64  Aligned_cols=202  Identities=23%  Similarity=0.260  Sum_probs=131.6

Q ss_pred             CCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc----CC----HHHH
Q 005877          174 DMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK----GN----AGAM  245 (672)
Q Consensus       174 ~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~----~~----~~a~  245 (672)
                      .++++|...|+++..                              .+...+++++|.+.|.++++.    ++    ..++
T Consensus        29 ~~~e~Aa~~y~~Aa~------------------------------~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~   78 (282)
T PF14938_consen   29 PDYEEAADLYEKAAN------------------------------CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAY   78 (282)
T ss_dssp             HHHHHHHHHHHHHHH------------------------------HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH------------------------------HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            478889999988754                              455678889999999987543    32    3556


Q ss_pred             HHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCc-CCHHHHHHHHHHHHHc----
Q 005877          246 YKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVE-RNYTKALEWLTHAARQ----  312 (672)
Q Consensus       246 ~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~----  312 (672)
                      ...+.+|...      ++++|+++|++|++.    |.    +..+..+|.+|..    . +++++|+++|++|++.    
T Consensus        79 ~~Aa~~~k~~------~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e  148 (282)
T PF14938_consen   79 EEAANCYKKG------DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQE  148 (282)
T ss_dssp             HHHHHHHHHT------THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhh------CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHC
Confidence            6677777655      888999999998863    44    4677888888887    6 7899999999988863    


Q ss_pred             CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--------CH-HHHHHHHHHHHcCCCchhcHHHHHHHH
Q 005877          313 QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--------EA-GGHYNLGVMYYKGIGVKRDVKLACKYF  379 (672)
Q Consensus       313 ~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--------~~-~a~~~Lg~~y~~g~g~~~~~~~A~~~~  379 (672)
                      +.    ..+...++.++..     .++|++|++.|++.+...        .+ ..++..+.+++.    .+|...|.+.|
T Consensus       149 ~~~~~a~~~~~~~A~l~~~-----l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~----~~D~v~A~~~~  219 (282)
T PF14938_consen  149 GSPHSAAECLLKAADLYAR-----LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA----MGDYVAARKAL  219 (282)
T ss_dssp             T-HHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH----TT-HHHHHHHH
T ss_pred             CChhhHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence            22    3346677777775     458888888888887641        11 234566777777    77888888888


Q ss_pred             HHHHHcC-----CH--HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhH
Q 005877          380 LVAANAG-----HQ--KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSS  426 (672)
Q Consensus       380 ~~A~~~~-----~~--~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a  426 (672)
                      ++..+..     ..  .....|-..+..|  -...+++|+.-|.+..+.++|..
T Consensus       220 ~~~~~~~~~F~~s~E~~~~~~l~~A~~~~--D~e~f~~av~~~d~~~~ld~w~~  271 (282)
T PF14938_consen  220 ERYCSQDPSFASSREYKFLEDLLEAYEEG--DVEAFTEAVAEYDSISRLDNWKT  271 (282)
T ss_dssp             HHHGTTSTTSTTSHHHHHHHHHHHHHHTT---CCCHHHHCHHHTTSS---HHHH
T ss_pred             HHHHhhCCCCCCcHHHHHHHHHHHHHHhC--CHHHHHHHHHHHcccCccHHHHH
Confidence            8876432     22  2333444445443  45667777777776666666554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.71  E-value=3.7e-07  Score=86.96  Aligned_cols=116  Identities=15%  Similarity=0.163  Sum_probs=96.0

Q ss_pred             hhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHH-hccCC--HH
Q 005877          105 VRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTY-LRQDM--HD  177 (672)
Q Consensus       105 ~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y-~~~~~--~~  177 (672)
                      .++.++++..+++  ..+++++++++.||.+|..    .+++++|+..|+++..  ++++..+..+|.++ ...|+  ++
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~  127 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP  127 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence            4566788888888  4557899999999999998    9999999999999987  68899999999964 66666  58


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005877          178 KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLR  257 (672)
Q Consensus       178 ~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~  257 (672)
                      +|+..++++++.                                                +++++.+++.||..++..  
T Consensus       128 ~A~~~l~~al~~------------------------------------------------dP~~~~al~~LA~~~~~~--  157 (198)
T PRK10370        128 QTREMIDKALAL------------------------------------------------DANEVTALMLLASDAFMQ--  157 (198)
T ss_pred             HHHHHHHHHHHh------------------------------------------------CCCChhHHHHHHHHHHHc--
Confidence            899888888763                                                456788888888888887  


Q ss_pred             CcccCHHHHHHHHHHHHHcC
Q 005877          258 GLRRDRTKALMWFSKAADKG  277 (672)
Q Consensus       258 ~~~~~~~~A~~~~~~a~~~~  277 (672)
                         +++++|+.+++++++..
T Consensus       158 ---g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        158 ---ADYAQAIELWQKVLDLN  174 (198)
T ss_pred             ---CCHHHHHHHHHHHHhhC
Confidence               48889999888888753

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.69  E-value=3.2e-06  Score=95.66  Aligned_cols=230  Identities=11%  Similarity=-0.015  Sum_probs=142.3

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCH
Q 005877          238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLY  315 (672)
Q Consensus       238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~  315 (672)
                      ++++..++..|...|.     ..+++++|++..+.+++  ++....++.+|.++..    .+++..+.-.          
T Consensus        27 ~p~n~~a~~~Li~~~~-----~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q----~~~~~~~~lv----------   87 (906)
T PRK14720         27 SLSKFKELDDLIDAYK-----SENLTDEAKDICEEHLKEHKKSISALYISGILSLS----RRPLNDSNLL----------   87 (906)
T ss_pred             CcchHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh----hcchhhhhhh----------
Confidence            4456677777777652     34677777777776665  3566777777777666    4443322221          


Q ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHH-HHHhC-CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHH
Q 005877          316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFE-KAADN-EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF  391 (672)
Q Consensus       316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~-~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~  391 (672)
                          .++.+...     ..++ .+++++- ...+. ++..|++.||.||.+    .++.++|...|+++++.  .++.++
T Consensus        88 ----~~l~~~~~-----~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk----~g~~~ka~~~yer~L~~D~~n~~aL  153 (906)
T PRK14720         88 ----NLIDSFSQ-----NLKW-AIVEHICDKILLYGENKLALRTLAEAYAK----LNENKKLKGVWERLVKADRDNPEIV  153 (906)
T ss_pred             ----hhhhhccc-----ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCcccHHHH
Confidence                22222221     2244 4444444 33343 355688899999988    88999999999998874  478888


Q ss_pred             HHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005877          392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGE  471 (672)
Q Consensus       392 ~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~  471 (672)
                      +++|..|..    . |.++|+.++++|++.            +...+++.++..++++.++........           
T Consensus       154 Nn~AY~~ae----~-dL~KA~~m~~KAV~~------------~i~~kq~~~~~e~W~k~~~~~~~d~d~-----------  205 (906)
T PRK14720        154 KKLATSYEE----E-DKEKAITYLKKAIYR------------FIKKKQYVGIEEIWSKLVHYNSDDFDF-----------  205 (906)
T ss_pred             HHHHHHHHH----h-hHHHHHHHHHHHHHH------------HHhhhcchHHHHHHHHHHhcCcccchH-----------
Confidence            999988887    5 899999999988875            555667888888888877664332211           


Q ss_pred             CCcccCCCCCCCchHhHHHHHHHHHHHH---h-CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHH
Q 005877          472 GSMCMGESGFCTDAERHQCAHSLWWQAS---E-QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFN  545 (672)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~---~-~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~  545 (672)
                                         =..+.++-.   . ..-.+.+.-|=.+|.    ..+|+++++..++.+++.  .|..+.+.
T Consensus       206 -------------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~----~~~~~~~~i~iLK~iL~~~~~n~~a~~~  262 (906)
T PRK14720        206 -------------------FLRIERKVLGHREFTRLVGLLEDLYEPYK----ALEDWDEVIYILKKILEHDNKNNKAREE  262 (906)
T ss_pred             -------------------HHHHHHHHHhhhccchhHHHHHHHHHHHh----hhhhhhHHHHHHHHHHhcCCcchhhHHH
Confidence                               000111100   0 011333444445555    567777777777777663  45666777


Q ss_pred             HHHHHH
Q 005877          546 LGYMHE  551 (672)
Q Consensus       546 Lg~~y~  551 (672)
                      |..+|.
T Consensus       263 l~~~y~  268 (906)
T PRK14720        263 LIRFYK  268 (906)
T ss_pred             HHHHHH
Confidence            777765

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=3.2e-05  Score=74.45  Aligned_cols=283  Identities=16%  Similarity=0.126  Sum_probs=167.2

Q ss_pred             ccCCCCCCcccccCCCC--CCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCChHHHHHH--HH-HhhcCCc
Q 005877           65 ENLDPGSWSPVFEPSID--PGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVL--GF-LYGMGMM  139 (672)
Q Consensus        65 ~~~~~~~a~~~~~~~~~--~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~L--g~-~y~~G~g  139 (672)
                      ....|..++.++.-...  +.+..++..+|.+++.       ..+|..|...|++....-...++|.+  +. +|.    
T Consensus        22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-------~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~----   90 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-------LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK----   90 (459)
T ss_pred             HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH----
Confidence            34466666666655533  4345567778887774       88999999999997766544555443  22 333    


Q ss_pred             ccCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhh
Q 005877          140 RERNKGKAFLYHHFAAEGGN--IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG  217 (672)
Q Consensus       140 ~~~d~~~A~~~~~~A~~~~~--~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  217 (672)
                       ..-+..|+.......+..+  ....-.-+.+....+|+..+....++....                  -......+.|
T Consensus        91 -A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e------------------n~Ad~~in~g  151 (459)
T KOG4340|consen   91 -ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE------------------NEADGQINLG  151 (459)
T ss_pred             -hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC------------------Cccchhccch
Confidence             4567777776665544322  123333344555566666665555543210                  0113345788


Q ss_pred             HhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC
Q 005877          218 ALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARG  292 (672)
Q Consensus       218 ~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g  292 (672)
                      -+..+.|+++.|++-|+.+.+-+  +|..-++++.++++.     +++..|+++....++.|   +|+  +.+|..- .|
T Consensus       152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~-----~qyasALk~iSEIieRG~r~HPE--lgIGm~t-eg  223 (459)
T KOG4340|consen  152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSS-----RQYASALKHISEIIERGIRQHPE--LGIGMTT-EG  223 (459)
T ss_pred             heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhh-----hhHHHHHHHHHHHHHhhhhcCCc--cCcccee-cc
Confidence            89999999999999999998774  889999999999988     59999999999988864   332  1222211 11


Q ss_pred             CCC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH----HhCCCHHHHHHHHHHHHcCC
Q 005877          293 AGV--ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA----ADNEEAGGHYNLGVMYYKGI  366 (672)
Q Consensus       293 ~g~--~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a----~~~~~~~a~~~Lg~~y~~g~  366 (672)
                      ..+  -+|.       ....+.+..++.+.-..++..     .+|++.|.+.+...    -..-+|....|++.+-..|.
T Consensus       224 iDvrsvgNt-------~~lh~Sal~eAfNLKaAIeyq-----~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~  291 (459)
T KOG4340|consen  224 IDVRSVGNT-------LVLHQSALVEAFNLKAAIEYQ-----LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDAR  291 (459)
T ss_pred             Cchhcccch-------HHHHHHHHHHHhhhhhhhhhh-----cccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCC
Confidence            110  1111       111122234455555555554     45877777665432    11237788888888776643


Q ss_pred             CchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 005877          367 GVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHT  400 (672)
Q Consensus       367 g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~  400 (672)
                      -+.+--+  +.++ .-..+-+++..-||=.+|-+
T Consensus       292 p~~g~~K--LqFL-L~~nPfP~ETFANlLllyCK  322 (459)
T KOG4340|consen  292 PTEGFEK--LQFL-LQQNPFPPETFANLLLLYCK  322 (459)
T ss_pred             ccccHHH--HHHH-HhcCCCChHHHHHHHHHHhh
Confidence            2222111  1111 11234466777777766654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.65  E-value=0.00022  Score=75.72  Aligned_cols=372  Identities=12%  Similarity=0.135  Sum_probs=226.4

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh--hhhccCCCCcccc-hhcccC-chhhhhHhhhc------cCChHHHH
Q 005877          161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN--SFLISKDSPVIEP-IRIHNG-AEENKGALRKS------RGEDDEAF  230 (672)
Q Consensus       161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~--~~~~~~~~~~~~~-~~l~~~-~~~~~~~~~~~------~g~~~~Ai  230 (672)
                      .-...||..|.+.|.+++|...|++++.....  +|..     +... .+.-+. ....++..-..      .-+.+-..
T Consensus       249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~-----ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~  323 (835)
T KOG2047|consen  249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQ-----IFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM  323 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHH-----HHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence            34567899999999999999999999875432  1110     0000 000000 00001100000      11223344


Q ss_pred             HHHHHHHHcC--------------CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CCH-HHHHHHHHH
Q 005877          231 QILEYQAQKG--------------NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------GEP-QSMEFLGEI  288 (672)
Q Consensus       231 ~~~~~aa~~~--------------~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~~~-~a~~~Lg~~  288 (672)
                      ..|+..++..              +..-....-.++       +++..+-+..|..|+..       |.+ .....+|.+
T Consensus       324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~-------e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fakl  396 (835)
T KOG2047|consen  324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY-------EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKL  396 (835)
T ss_pred             HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh-------cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHH
Confidence            4555544332              222222222222       24788899999999874       333 467889999


Q ss_pred             HHcCCCCcCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC------------
Q 005877          289 YARGAGVERNYTKALEWLTHAARQQL------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE------------  350 (672)
Q Consensus       289 y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~------------  350 (672)
                      |.+    .++.+.|...|++|.+-+.      +..+..-|.+-+.     ..+++.|+++.++|...-            
T Consensus       397 Ye~----~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr-----h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  397 YEN----NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR-----HENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             HHh----cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            999    9999999999999997642      3445666666664     459999999999997541            


Q ss_pred             --------CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHH
Q 005877          351 --------EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE  420 (672)
Q Consensus       351 --------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~  420 (672)
                              ....+..++.+-..    .|-++.-...|.+.++.  -.|..-.|.|..+++    .+-+++|...|++.+.
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs----~gtfestk~vYdriidLriaTPqii~NyAmfLEe----h~yfeesFk~YErgI~  539 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEES----LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE----HKYFEESFKAYERGIS  539 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hHHHHHHHHHHHcCCc
Confidence                    12223334444444    55666667777777664  367778889988887    7888999999999988


Q ss_pred             cCChh-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHH
Q 005877          421 RGPWS-------SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHS  493 (672)
Q Consensus       421 ~~~~~-------a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~  493 (672)
                      .-+|.       .+......-|.....+.|...|++|++.-.+..--.+=.+|.++.+            +-|-...|++
T Consensus       540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEE------------e~GLar~ams  607 (835)
T KOG2047|consen  540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEE------------EHGLARHAMS  607 (835)
T ss_pred             cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------HhhHHHHHHH
Confidence            87543       3333344455556899999999999994343332223233333211            1345678999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHH---HHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 005877          494 LWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-SNAQA---MFNLGYMHEHGQGLPLDLHLAKRYYDQ  569 (672)
Q Consensus       494 ~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~a---~~~Lg~~y~~g~g~~~d~~~A~~~~~~  569 (672)
                      .|++|...-+....+.+=.+|.......=-...-...|++|++. .+..+   ....+.+=    ...|..+.|...|.-
T Consensus       608 iyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlE----tklGEidRARaIya~  683 (835)
T KOG2047|consen  608 IYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLE----TKLGEIDRARAIYAH  683 (835)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHh----hhhhhHHHHHHHHHh
Confidence            99998877776666655555542100000122345678888773 22222   22233332    237899999999999


Q ss_pred             HHhc-CCCC
Q 005877          570 ALEV-DPAA  577 (672)
Q Consensus       570 A~~~-~~~~  577 (672)
                      +.+. +|-.
T Consensus       684 ~sq~~dPr~  692 (835)
T KOG2047|consen  684 GSQICDPRV  692 (835)
T ss_pred             hhhcCCCcC
Confidence            9988 4443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.65  E-value=5.3e-07  Score=80.51  Aligned_cols=86  Identities=19%  Similarity=0.127  Sum_probs=65.8

Q ss_pred             HhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHH
Q 005877          486 ERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLH  561 (672)
Q Consensus       486 ~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~  561 (672)
                      +++++|+.++++++  .+.++.+++++|.++.    ..+++++|+.+++++++.  .++..++++|.+|..    .|+++
T Consensus        31 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~  102 (135)
T TIGR02552        31 GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ----MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA----LGEPE  102 (135)
T ss_pred             ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCCHH
Confidence            34444444444332  3456778888888888    778999999999998764  678889999999887    78999


Q ss_pred             HHHHHHHHHHhcCCCCcc
Q 005877          562 LAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       562 ~A~~~~~~A~~~~~~~~~  579 (672)
                      +|+.+|+++++.+|+...
T Consensus       103 ~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552       103 SALKALDLAIEICGENPE  120 (135)
T ss_pred             HHHHHHHHHHHhccccch
Confidence            999999999999887653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=1.6e-06  Score=92.89  Aligned_cols=213  Identities=13%  Similarity=0.086  Sum_probs=173.9

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH-
Q 005877          160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ-  238 (672)
Q Consensus       160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~-  238 (672)
                      ......++.++...|-...|+..|++.-.                        ..++...|...|+..+|..+..+.++ 
T Consensus       398 Wq~q~~laell~slGitksAl~I~Erlem------------------------w~~vi~CY~~lg~~~kaeei~~q~lek  453 (777)
T KOG1128|consen  398 WQLQRLLAELLLSLGITKSALVIFERLEM------------------------WDPVILCYLLLGQHGKAEEINRQELEK  453 (777)
T ss_pred             chHHHHHHHHHHHcchHHHHHHHHHhHHH------------------------HHHHHHHHHHhcccchHHHHHHHHhcC
Confidence            35667788999999999999999998743                        23466778889999999999999888 


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHH
Q 005877          239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYS  316 (672)
Q Consensus       239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~  316 (672)
                      +.++..+..||.+..+.     --+++|.++.+.    -+..|...+|.....    .++++++.+.++.+++.+  ...
T Consensus       454 ~~d~~lyc~LGDv~~d~-----s~yEkawElsn~----~sarA~r~~~~~~~~----~~~fs~~~~hle~sl~~nplq~~  520 (777)
T KOG1128|consen  454 DPDPRLYCLLGDVLHDP-----SLYEKAWELSNY----ISARAQRSLALLILS----NKDFSEADKHLERSLEINPLQLG  520 (777)
T ss_pred             CCcchhHHHhhhhccCh-----HHHHHHHHHhhh----hhHHHHHhhcccccc----chhHHHHHHHHHHHhhcCccchh
Confidence            46899999999987544     234444444432    345678888887777    799999999999999875  678


Q ss_pred             HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHH
Q 005877          317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFY  392 (672)
Q Consensus       317 a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~  392 (672)
                      .++.+|.+...     -++++.|.++|.+.+..  ++..++.||...|..    .++..+|...++.|++-  +++..+-
T Consensus       521 ~wf~~G~~ALq-----lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w~iWE  591 (777)
T KOG1128|consen  521 TWFGLGCAALQ-----LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHWQIWE  591 (777)
T ss_pred             HHHhccHHHHH-----HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCCeeee
Confidence            89999999986     45999999999999765  799999999999999    99999999999999885  4667666


Q ss_pred             HHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877          393 QLAKMFHTGVGLKKNLHMATALYKLVAERG  422 (672)
Q Consensus       393 ~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~  422 (672)
                      |.-.+...    .++++.|++.|++.++..
T Consensus       592 Nymlvsvd----vge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  592 NYMLVSVD----VGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             chhhhhhh----cccHHHHHHHHHHHHHhh
Confidence            66666666    899999999999988764

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.56  E-value=0.00025  Score=76.98  Aligned_cols=250  Identities=16%  Similarity=0.104  Sum_probs=168.0

Q ss_pred             hhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q 005877          215 NKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQSMEFLGEIYA  290 (672)
Q Consensus       215 ~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~  290 (672)
                      ....+....|++++|++.++.....  +....+-..|.+++..+     ++++|...|+..++.+  +..-+..|..+..
T Consensus         9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg-----~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLG-----RKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            4567778899999999999886655  46777888899999884     9999999999999854  4444444444441


Q ss_pred             cCCC-CcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Q 005877          291 RGAG-VERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYT-KAKEYFEKAADNEEAGGHYNLGVMYYKGIG  367 (672)
Q Consensus       291 ~g~g-~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~-~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g  367 (672)
                      -..+ ...+.+.-...|+...+.- ...+...+......|     .++. .+..|....+..|.|....+|-.+|..   
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g-----~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d---  155 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG-----DEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD---  155 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCH-----HHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC---
Confidence            1111 1235677777777655432 233344455444432     2444 455577888888999999999999875   


Q ss_pred             chhcHHHHHHHHHH---HHHc------------CCH----HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhH
Q 005877          368 VKRDVKLACKYFLV---AANA------------GHQ----KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS  426 (672)
Q Consensus       368 ~~~~~~~A~~~~~~---A~~~------------~~~----~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a  426 (672)
                       .....-....++.   .++.            .++    .+++.|+..|..    .+++++|+++.+++++..|  ++.
T Consensus       156 -~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~----~g~~~~Al~~Id~aI~htPt~~el  230 (517)
T PF12569_consen  156 -PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY----LGDYEKALEYIDKAIEHTPTLVEL  230 (517)
T ss_pred             -hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHH
Confidence             3332222222222   2211            111    466888888877    8999999999999999986  456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSN--AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA  498 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~n--la~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  498 (672)
                      +...|.++-..|++.+|..+++.|-.++...-..|  .+..+-+                .++.++|.+....-
T Consensus       231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR----------------a~~~e~A~~~~~~F  288 (517)
T PF12569_consen  231 YMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR----------------AGRIEEAEKTASLF  288 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH----------------CCCHHHHHHHHHhh
Confidence            88889999999999999999999977764433322  3444433                55677777666643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.53  E-value=2.7e-06  Score=86.23  Aligned_cols=163  Identities=23%  Similarity=0.252  Sum_probs=121.5

Q ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCC
Q 005877          261 RDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVE  332 (672)
Q Consensus       261 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~  332 (672)
                      .|++.|...|++|.            ..|..    .+++++|...|.++++.    ++    ..++...+.+|..     
T Consensus        29 ~~~e~Aa~~y~~Aa------------~~fk~----~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-----   87 (282)
T PF14938_consen   29 PDYEEAADLYEKAA------------NCFKL----AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-----   87 (282)
T ss_dssp             HHHHHHHHHHHHHH------------HHHHH----TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-----
T ss_pred             CCHHHHHHHHHHHH------------HHHHH----HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----
Confidence            48889999998874            45666    78888888888888742    22    3356677888875     


Q ss_pred             cCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCch-hcHHHHHHHHHHHHHc----CC----HHHHHHHH
Q 005877          333 KKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVK-RDVKLACKYFLVAANA----GH----QKAFYQLA  395 (672)
Q Consensus       333 ~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~A~~~----~~----~~a~~~L~  395 (672)
                       .++++|+.+|++|++.    |+    +..+.++|.+|..    . +++++|+++|++|++.    +.    .....++|
T Consensus        88 -~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A  162 (282)
T PF14938_consen   88 -GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA  162 (282)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             -hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence             3899999999999864    44    5678899999998    7 8999999999999873    22    35677889


Q ss_pred             HHHHcCCCccCCHHHHHHHHHHHHHcC---C---h---hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          396 KMFHTGVGLKKNLHMATALYKLVAERG---P---W---SSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       396 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~---~---~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      .++..    .+++++|+..|++++...   +   .   ..++..+.++...||+..|...+++..+.
T Consensus       163 ~l~~~----l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  163 DLYAR----LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHH----TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHH----hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99887    899999999999998753   1   1   13456777888899999999999887654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=0.00016  Score=78.39  Aligned_cols=259  Identities=14%  Similarity=0.130  Sum_probs=151.2

Q ss_pred             HHHHHHHHhhcCCcccCCHHHHHHHHHHHHh----------------------CCCHHHHHHHHHHHhccCCHHHHHHHH
Q 005877          126 ARSVLGFLYGMGMMRERNKGKAFLYHHFAAE----------------------GGNIQSKMAVAYTYLRQDMHDKAVKLY  183 (672)
Q Consensus       126 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~----------------------~~~~~a~~~Lg~~y~~~~~~~~A~~~y  183 (672)
                      .+|+.+.-...    .+|.+.|++||+|+-.                      ..++..+.--|......|+.+.|+.+|
T Consensus       860 Tyy~yA~~Lea----r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y  935 (1416)
T KOG3617|consen  860 TYYNYAKYLEA----RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY  935 (1416)
T ss_pred             hHHHHHHHHHh----hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence            34444444444    7889999999998721                      123333444566666789999999999


Q ss_pred             HHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCH
Q 005877          184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDR  263 (672)
Q Consensus       184 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~  263 (672)
                      ..+-+-                        ..+-.+...+|+.++|-.+-   -+.||..|.|.||+.|...     ++.
T Consensus       936 ~~A~D~------------------------fs~VrI~C~qGk~~kAa~iA---~esgd~AAcYhlaR~YEn~-----g~v  983 (1416)
T KOG3617|consen  936 SSAKDY------------------------FSMVRIKCIQGKTDKAARIA---EESGDKAACYHLARMYEND-----GDV  983 (1416)
T ss_pred             HHhhhh------------------------hhheeeEeeccCchHHHHHH---HhcccHHHHHHHHHHhhhh-----HHH
Confidence            887552                        22445566788888887653   3458999999999999887     499


Q ss_pred             HHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCc
Q 005877          264 TKALMWFSKAADK----------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEK  333 (672)
Q Consensus       264 ~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~  333 (672)
                      .+|+.+|.+|-..          +-..-+.+|+.+-.     +.|.-.|..||+..-      .+..-+.+..+    ..
T Consensus       984 ~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~-----~~d~v~aArYyEe~g------~~~~~AVmLYH----kA 1048 (1416)
T KOG3617|consen  984 VKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSG-----GSDLVSAARYYEELG------GYAHKAVMLYH----KA 1048 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC-----chhHHHHHHHHHHcc------hhhhHHHHHHH----hh
Confidence            9999999987431          22333344443322     455566666666421      01111111111    01


Q ss_pred             CCHHH------------HHHHHHHHHhC-CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 005877          334 KNYTK------------AKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHT  400 (672)
Q Consensus       334 ~~~~~------------A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~  400 (672)
                      |-+.+            |+++.-+=++. .+|.....-+..+..    ..+|++|+.++-++-+..     -.|+.+...
T Consensus      1049 Gm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~----~~qyekAV~lL~~ar~~~-----~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1049 GMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFEN----NQQYEKAVNLLCLAREFS-----GALQLCKNR 1119 (1416)
T ss_pred             cchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHH-----HHHHHHhcC
Confidence            22333            33333332333 377777888888888    788999988877664321     123334333


Q ss_pred             CCCccCCHHHHHHHHHHH-HHc-C-C-----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877          401 GVGLKKNLHMATALYKLV-AER-G-P-----WSSLSRWALESYLKGDVGKAFLLYSRM  450 (672)
Q Consensus       401 g~g~~~~~~~A~~~~~~a-~~~-~-~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a  450 (672)
                      +.-+...+      -+.. ... + +     ...+-.+|....++|+|..|-+-|.+|
T Consensus      1120 nv~vtee~------aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1120 NVRVTEEF------AELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             CCchhHHH------HHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence            22111111      0110 000 1 1     124566788888899988888877766

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.47  E-value=1.3e-05  Score=90.10  Aligned_cols=128  Identities=9%  Similarity=-0.048  Sum_probs=105.4

Q ss_pred             CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 005877          386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSN  461 (672)
Q Consensus       386 ~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~n  461 (672)
                      .+++++.+||.+...    .+.+++|..+++.+++..|  ..+...++.++.+.+.+++|+..++++++.  .+..+++.
T Consensus        84 ~~~~~~~~La~i~~~----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         84 HTELFQVLVARALEA----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             ccHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            457888888888887    8888888888888888875  456778888888888888888888888654  57888888


Q ss_pred             HHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877          462 AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ  537 (672)
Q Consensus       462 la~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~  537 (672)
                      +|.++..                .+++++|+.+|++++.+  +++.+++.+|.++.    ..|+.++|...|++|++.
T Consensus       160 ~a~~l~~----------------~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~----~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        160 EAKSWDE----------------IGQSEQADACFERLSRQHPEFENGYVGWAQSLT----RRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHH----------------hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHh
Confidence            8888887                77888888888887754  45788899999998    889999999999998775

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.47  E-value=4.8e-07  Score=70.15  Aligned_cols=65  Identities=35%  Similarity=0.496  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHhcCC
Q 005877          503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPL-DLHLAKRYYDQALEVDP  575 (672)
Q Consensus       503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~  575 (672)
                      ++.+++.+|.+++    ..+++++|+.+|++|++.  +++.+++++|.+|..    .+ ++++|++++++|++++|
T Consensus         2 ~a~~~~~~g~~~~----~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYF----QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHcCc
Confidence            5788999999999    899999999999999874  789999999999987    77 79999999999999987

...

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.46  E-value=3.4e-06  Score=75.23  Aligned_cols=105  Identities=18%  Similarity=0.115  Sum_probs=63.6

Q ss_pred             HHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHH
Q 005877          342 YFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKL  417 (672)
Q Consensus       342 ~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~  417 (672)
                      .|+++++.+  ++.+.+.+|..+..    .+++++|..+|+++++.  .++.+++++|.++..    .+++++|+.++++
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~   76 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQ----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAYAL   76 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            344444442  45556666666666    66666666666666552  345666666666665    5666666666666


Q ss_pred             HHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          418 VAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       418 a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      +++..+  +..++.+|.++...|++++|+.+|+++++.+
T Consensus        77 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        77 AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            665553  4456666666666666666666666665554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.45  E-value=6.7e-06  Score=92.38  Aligned_cols=130  Identities=6%  Similarity=-0.095  Sum_probs=85.3

Q ss_pred             CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCC
Q 005877          122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD  199 (672)
Q Consensus       122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~  199 (672)
                      .+++++.+||.+-..    .+.+++|..+++.+.+  +++..+...++.++.+.+.+++|+..++++++..         
T Consensus        84 ~~~~~~~~La~i~~~----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~---------  150 (694)
T PRK15179         84 HTELFQVLVARALEA----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG---------  150 (694)
T ss_pred             ccHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC---------
Confidence            457777777777776    7777777777777765  6777777777777777777777777777776643         


Q ss_pred             CCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--C
Q 005877          200 SPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G  277 (672)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~  277 (672)
                                                             +.++.+++.+|.++...+     ++++|+..|++++..  +
T Consensus       151 ---------------------------------------p~~~~~~~~~a~~l~~~g-----~~~~A~~~y~~~~~~~p~  186 (694)
T PRK15179        151 ---------------------------------------SSSAREILLEAKSWDEIG-----QSEQADACFERLSRQHPE  186 (694)
T ss_pred             ---------------------------------------CCCHHHHHHHHHHHHHhc-----chHHHHHHHHHHHhcCCC
Confidence                                                   345566666666665552     666666666666542  3


Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877          278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ  312 (672)
Q Consensus       278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  312 (672)
                      ++.++..+|..+..    .|+.++|...|+++++.
T Consensus       187 ~~~~~~~~a~~l~~----~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        187 FENGYVGWAQSLTR----RGALWRARDVLQAGLDA  217 (694)
T ss_pred             cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            45566666666665    56666666666666543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.40  E-value=2.8e-05  Score=74.13  Aligned_cols=154  Identities=20%  Similarity=0.142  Sum_probs=107.6

Q ss_pred             CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 005877          386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSS--LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSN  461 (672)
Q Consensus       386 ~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a--~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~n  461 (672)
                      ++... .+++..+..    .++-+.+..+..+++...+.+.  ..-+|......|++..|+..+.++...  .+..+++-
T Consensus        65 ~d~~i-~~~a~a~~~----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~  139 (257)
T COG5010          65 EDLSI-AKLATALYL----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL  139 (257)
T ss_pred             chHHH-HHHHHHHHh----cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence            34444 555555544    5666667777776665554443  333777777778888888888887544  46777777


Q ss_pred             HHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--
Q 005877          462 AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--  537 (672)
Q Consensus       462 la~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--  537 (672)
                      +|.+|++                .++.+.|..-|.++.+  ++++.+..|||..|+    ..+|++.|..++..+...  
T Consensus       140 lgaaldq----------------~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~----L~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         140 LGAALDQ----------------LGRFDEARRAYRQALELAPNEPSIANNLGMSLL----LRGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             HHHHHHH----------------ccChhHHHHHHHHHHHhccCCchhhhhHHHHHH----HcCCHHHHHHHHHHHHhCCC
Confidence            7777777                5567777777776544  466778888888888    888999999888888664  


Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 005877          538 SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYD  568 (672)
Q Consensus       538 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  568 (672)
                      .+.....||+.+.    +..||+..|...-.
T Consensus       200 ad~~v~~NLAl~~----~~~g~~~~A~~i~~  226 (257)
T COG5010         200 ADSRVRQNLALVV----GLQGDFREAEDIAV  226 (257)
T ss_pred             CchHHHHHHHHHH----hhcCChHHHHhhcc
Confidence            4777888888884    34888888876543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.39  E-value=2.7e-06  Score=75.56  Aligned_cols=96  Identities=21%  Similarity=0.086  Sum_probs=85.6

Q ss_pred             CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC
Q 005877           84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN  159 (672)
Q Consensus        84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~  159 (672)
                      .-+..|..|...+.       .|++++|.+.|+-  ..++.++..++.||.++..    .+++.+|+..|.+|..  +++
T Consensus        34 ~l~~lY~~A~~ly~-------~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~dd  102 (157)
T PRK15363         34 PLNTLYRYAMQLME-------VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDA  102 (157)
T ss_pred             HHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCC
Confidence            34557777777664       6999999999999  5677899999999999999    9999999999999976  799


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 005877          160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIA  190 (672)
Q Consensus       160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~  190 (672)
                      +.+.+++|.+++..|+.+.|.+.|+.++...
T Consensus       103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        103 PQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998753

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.39  E-value=1e-05  Score=76.99  Aligned_cols=155  Identities=15%  Similarity=0.069  Sum_probs=93.7

Q ss_pred             CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhH
Q 005877          351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSS  426 (672)
Q Consensus       351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a  426 (672)
                      +..+ .++...+..    .|+-+.+..+..+++...  +.....-+|.....    .+++..|+..+++++...  +|.+
T Consensus        66 d~~i-~~~a~a~~~----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~----~g~~~~A~~~~rkA~~l~p~d~~~  136 (257)
T COG5010          66 DLSI-AKLATALYL----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR----NGNFGEAVSVLRKAARLAPTDWEA  136 (257)
T ss_pred             hHHH-HHHHHHHHh----cccccchHHHHhhhhccCcccHHHHHHHHHHHHH----hcchHHHHHHHHHHhccCCCChhh
Confidence            3444 445544444    455555555555543322  22333335555554    677777777777776665  3556


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC-
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN-  503 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-  503 (672)
                      +..+|.+|.+.|+++.|..-|.++++.  +.+...+|+|+.+.-                .++++.|..++..+..... 
T Consensus       137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----------------~gd~~~A~~lll~a~l~~~a  200 (257)
T COG5010         137 WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----------------RGDLEDAETLLLPAYLSPAA  200 (257)
T ss_pred             hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----------------cCCHHHHHHHHHHHHhCCCC
Confidence            666777777777777777777777444  566777777777665                5567777777776655544 


Q ss_pred             -HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005877          504 -EHAALLIGDAYYYGRGTQRDYERAAEAYMHA  534 (672)
Q Consensus       504 -~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A  534 (672)
                       ....-||+.+.-    ..+|+..|...-.+-
T Consensus       201 d~~v~~NLAl~~~----~~g~~~~A~~i~~~e  228 (257)
T COG5010         201 DSRVRQNLALVVG----LQGDFREAEDIAVQE  228 (257)
T ss_pred             chHHHHHHHHHHh----hcCChHHHHhhcccc
Confidence             334446666665    777887776655443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.38  E-value=1e-05  Score=71.99  Aligned_cols=94  Identities=15%  Similarity=0.098  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHH
Q 005877          316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAF  391 (672)
Q Consensus       316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~  391 (672)
                      +..+.+|.....     .|++++|...|+..+..+  +++.+++||.++..    .+++.+|+..|.+|..  ++++.+.
T Consensus        36 ~~lY~~A~~ly~-----~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~ddp~~~  106 (157)
T PRK15363         36 NTLYRYAMQLME-----VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDAPQAP  106 (157)
T ss_pred             HHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCchHH
Confidence            344455544443     456666666666655443  55566666666666    6666666666666644  3456666


Q ss_pred             HHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877          392 YQLAKMFHTGVGLKKNLHMATALYKLVAERG  422 (672)
Q Consensus       392 ~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~  422 (672)
                      +++|.++..    .++.+.|...|+.++...
T Consensus       107 ~~ag~c~L~----lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        107 WAAAECYLA----CDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHHh
Confidence            666666665    566666666666665544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=5.7e-05  Score=71.41  Aligned_cols=151  Identities=19%  Similarity=0.147  Sum_probs=106.6

Q ss_pred             cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhH
Q 005877          141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA  218 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  218 (672)
                      .+...-|..+++..-+  +|.......-|+.+...+++++|+++|+.+++.+|.+...                .-.+-.
T Consensus        65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~----------------~KRKlA  128 (289)
T KOG3060|consen   65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI----------------RKRKLA  128 (289)
T ss_pred             hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH----------------HHHHHH
Confidence            5577888888888665  6888888888999999999999999999988765543221                112344


Q ss_pred             hhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCC
Q 005877          219 LRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAG  294 (672)
Q Consensus       219 ~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g  294 (672)
                      +...+|+.-+||+.+..-.+.  +|.+++..|+.+|+.-     +++++|.-+|++.+-  +-++..+..+|.++..-.|
T Consensus       129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~-----~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE-----GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            555677777777777777666  6777777777777766     477777777777653  4566666777777655222


Q ss_pred             CcCCHHHHHHHHHHHHHcC
Q 005877          295 VERNYTKALEWLTHAARQQ  313 (672)
Q Consensus       295 ~~~~~~~A~~~~~~a~~~~  313 (672)
                       ..|.+-|.++|.++++.+
T Consensus       204 -~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  204 -AENLELARKYYERALKLN  221 (289)
T ss_pred             -HHHHHHHHHHHHHHHHhC
Confidence             456677777777777664

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.28  E-value=0.0014  Score=65.17  Aligned_cols=219  Identities=18%  Similarity=0.140  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---
Q 005877          280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---  349 (672)
Q Consensus       280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---  349 (672)
                      +++.+|+.-++.    .-++.+++.|-+..+...       -..+...+|..+..     .+-+++++++|++|...   
T Consensus        84 ea~lnlar~~e~----l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlg-----ls~fq~~Lesfe~A~~~A~~  154 (518)
T KOG1941|consen   84 EAYLNLARSNEK----LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLG-----LSVFQKALESFEKALRYAHN  154 (518)
T ss_pred             HHHHHHHHHHHH----HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhh-----HHHHHHHHHHHHHHHHHhhc
Confidence            466677777766    667777777776665432       11233345555542     34678899999888753   


Q ss_pred             -CCH----HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc------CCH------HHHHHHHHHHHcCCCccCCHHHHH
Q 005877          350 -EEA----GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA------GHQ------KAFYQLAKMFHTGVGLKKNLHMAT  412 (672)
Q Consensus       350 -~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~------~~~------~a~~~L~~~y~~g~g~~~~~~~A~  412 (672)
                       +++    ..+..||.+|-.    .+|+++|.-+..+|++.      ++.      .+++.++..+..    +|..-.|.
T Consensus       155 ~~D~~LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~----~G~LgdA~  226 (518)
T KOG1941|consen  155 NDDAMLELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL----LGRLGDAM  226 (518)
T ss_pred             cCCceeeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH----hcccccHH
Confidence             332    456788888888    89999999998888762      333      456677777765    77777788


Q ss_pred             HHHHHHH----HcCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCccc
Q 005877          413 ALYKLVA----ERGP----WSSLSRWALESYLKGDVGKAFLLYSRMA--------ELGYEVAQSNAAWILDKYGEGSMCM  476 (672)
Q Consensus       413 ~~~~~a~----~~~~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~--------~~g~~~a~~nla~~l~~~~~~~~~~  476 (672)
                      ++.+++.    +.|+    ...+.-+|.+|-..||.+.|+.-|+.|.        .+|...++...|..+...       
T Consensus       227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~-------  299 (518)
T KOG1941|consen  227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETL-------  299 (518)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-------
Confidence            8887764    4454    2346678999999999999999999983        234566666677766552       


Q ss_pred             CCCCCCCchHhHHH-----HHHHHHHH----HhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005877          477 GESGFCTDAERHQC-----AHSLWWQA----SEQGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHAR  535 (672)
Q Consensus       477 ~~~~~~~~~~~~~~-----A~~~~~~a----~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~  535 (672)
                               .-..+     |++.-++.    ..-|.    -..+..++.+|.    .+|+-++=..++.+|-
T Consensus       300 ---------r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYr----s~gl~d~~~~h~~ra~  358 (518)
T KOG1941|consen  300 ---------RLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYR----SKGLQDELRAHVVRAH  358 (518)
T ss_pred             ---------HHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----hccchhHHHHHHHHHH
Confidence                     22222     55555543    33343    234568999997    5666666556666653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.25  E-value=0.00016  Score=71.09  Aligned_cols=173  Identities=12%  Similarity=0.004  Sum_probs=112.9

Q ss_pred             cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChH---HHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--C
Q 005877           85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPH---ARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--G  157 (672)
Q Consensus        85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~---a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~  157 (672)
                      +...|..|...+.       .+++++|+..|++..  .++.+.   +.+.||.+|..    .+++++|+.++++.++  |
T Consensus        32 ~~~~Y~~A~~~~~-------~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~~~~e~fi~~~P  100 (243)
T PRK10866         32 PSEIYATAQQKLQ-------DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNP  100 (243)
T ss_pred             HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCc
Confidence            5557888888774       599999999999954  445544   45899999999    9999999999999987  4


Q ss_pred             C---CHHHHHHHHHHHhccC---------------C---HHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhh
Q 005877          158 G---NIQSKMAVAYTYLRQD---------------M---HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENK  216 (672)
Q Consensus       158 ~---~~~a~~~Lg~~y~~~~---------------~---~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  216 (672)
                      +   .+.+++.+|.++...+               |   ..+|+..|+++++..|.+-                      
T Consensus       101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~----------------------  158 (243)
T PRK10866        101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ----------------------  158 (243)
T ss_pred             CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh----------------------
Confidence            4   4578888998753322               2   3467788888877654321                      


Q ss_pred             hHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHc
Q 005877          217 GALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYAR  291 (672)
Q Consensus       217 ~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~  291 (672)
                              -..+|...+.. +...-+.--+.+|..|+..     +++.-|+.-++..++.     ..+++++.++..|..
T Consensus       159 --------ya~~A~~rl~~-l~~~la~~e~~ia~~Y~~~-----~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~  224 (243)
T PRK10866        159 --------YTTDATKRLVF-LKDRLAKYELSVAEYYTKR-----GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ  224 (243)
T ss_pred             --------hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHc-----CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence                    00111111111 1111233344666777666     3777777777777763     345677777777766


Q ss_pred             CCCCcCCHHHHHHHHHH
Q 005877          292 GAGVERNYTKALEWLTH  308 (672)
Q Consensus       292 g~g~~~~~~~A~~~~~~  308 (672)
                          .|..++|..+...
T Consensus       225 ----lg~~~~a~~~~~~  237 (243)
T PRK10866        225 ----LQLNAQADKVAKI  237 (243)
T ss_pred             ----cCChHHHHHHHHH
Confidence                6666666655543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.25  E-value=2.7e-06  Score=65.93  Aligned_cols=64  Identities=17%  Similarity=0.259  Sum_probs=59.4

Q ss_pred             ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Q 005877          123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQD-MHDKAVKLYAELAEIA  190 (672)
Q Consensus       123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~-~~~~A~~~y~~a~~~~  190 (672)
                      ++..+..+|.++..    .+++++|+.+|+++++  ++++.+++.+|.+|...+ ++++|+..++++++++
T Consensus         2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            67889999999999    9999999999999987  788999999999999999 7999999999998864

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.25  E-value=3.8e-05  Score=71.66  Aligned_cols=89  Identities=17%  Similarity=0.112  Sum_probs=53.0

Q ss_pred             CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--
Q 005877          351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--  423 (672)
Q Consensus       351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--  423 (672)
                      .+.+++++|..+..    .+++++|+.+|+++++..     ...+++++|.++..    .+++++|+.+|+++++..+  
T Consensus        34 ~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         34 EAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccc
Confidence            45556666666666    666666666666666432     13466666666665    6666666666666666543  


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHH
Q 005877          424 WSSLSRWALESYLKGDVGKAFLLY  447 (672)
Q Consensus       424 ~~a~~~lg~~~~~~g~~~~A~~~~  447 (672)
                      ..++..+|.++...|+...+...+
T Consensus       106 ~~~~~~lg~~~~~~g~~~~a~~~~  129 (172)
T PRK02603        106 PSALNNIAVIYHKRGEKAEEAGDQ  129 (172)
T ss_pred             HHHHHHHHHHHHHcCChHhHhhCH
Confidence            344556666666666554444333

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.24  E-value=2.4e-05  Score=79.04  Aligned_cols=246  Identities=15%  Similarity=0.050  Sum_probs=152.4

Q ss_pred             cCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcH
Q 005877          296 ERNYTKALEWLTHAARQQL---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDV  372 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~  372 (672)
                      .|+|.+++.-... .....   ......+.+.|..     .|.++..+.-..... .....+...++..+..    ..+.
T Consensus        14 ~G~Y~~~i~e~~~-~~~~~~~~~e~~~~~~Rs~iA-----lg~~~~vl~ei~~~~-~~~l~av~~la~y~~~----~~~~   82 (290)
T PF04733_consen   14 LGNYQQCINEASL-KSFSPENKLERDFYQYRSYIA-----LGQYDSVLSEIKKSS-SPELQAVRLLAEYLSS----PSDK   82 (290)
T ss_dssp             TT-HHHHCHHHHC-HTSTCHHHHHHHHHHHHHHHH-----TT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCT----STTH
T ss_pred             hhhHHHHHHHhhc-cCCCchhHHHHHHHHHHHHHH-----cCChhHHHHHhccCC-ChhHHHHHHHHHHHhC----ccch
Confidence            5777777765551 12222   2233444444443     345554443332211 2233455555555544    3455


Q ss_pred             HHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005877          373 KLACKYFLVAANA----GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYS  448 (672)
Q Consensus       373 ~~A~~~~~~A~~~----~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~  448 (672)
                      +.++.-++..+..    .++....-.|.++..    .+++++|+..+.+.   ++.+...-...++...++++.|.+.++
T Consensus        83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~----~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~  155 (290)
T PF04733_consen   83 ESALEELKELLADQAGESNEIVQLLAATILFH----EGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELK  155 (290)
T ss_dssp             HCHHHHHHHCCCTS---CHHHHHHHHHHHHCC----CCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHH----cCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5555555443322    133444555566655    78888888887765   556666667777888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHH
Q 005877          449 RMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYER  526 (672)
Q Consensus       449 ~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~  526 (672)
                      .+-+.+......+++-.+-....     |       .+.+.+|...|+...+.  .++..++.++.++.    ..+++++
T Consensus       156 ~~~~~~eD~~l~qLa~awv~l~~-----g-------~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l----~~~~~~e  219 (290)
T PF04733_consen  156 NMQQIDEDSILTQLAEAWVNLAT-----G-------GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL----QLGHYEE  219 (290)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHH-----T-------TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH----HCT-HHH
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHh-----C-------chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH----HhCCHHH
Confidence            88777665555555544333111     1       23577888888876655  34677788999999    8999999


Q ss_pred             HHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHhcCCCCcc
Q 005877          527 AAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDL-HLAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       527 A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~-~~A~~~~~~A~~~~~~~~~  579 (672)
                      |.+.+++|++.  ++++++.|+..+..+    .|+. +.+.++..+....+|+...
T Consensus       220 Ae~~L~~al~~~~~~~d~LaNliv~~~~----~gk~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  220 AEELLEEALEKDPNDPDTLANLIVCSLH----LGKPTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             HHHHHHHHCCC-CCHHHHHHHHHHHHHH----TT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHH----hCCChhHHHHHHHHHHHhCCCChH
Confidence            99999999774  789999999998776    4444 6677888888888887543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.20  E-value=0.012  Score=60.86  Aligned_cols=417  Identities=12%  Similarity=-0.001  Sum_probs=244.3

Q ss_pred             CChhhHHHHHHHHHHHHhC--CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCHHH
Q 005877          103 GDVRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDK  178 (672)
Q Consensus       103 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~~~~~~~  178 (672)
                      ...+++..|...|++|.+.  .+...+...+.+=..    .+....|...+.+|+..  .-....+..-++-...||...
T Consensus        84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emk----nk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~g  159 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMK----NKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAG  159 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHh----hhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHH
Confidence            3457778888888887665  345555555555444    55667777777777763  323333333333344688888


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC
Q 005877          179 AVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLR  257 (672)
Q Consensus       179 A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~-~~~~a~~~Lg~~y~~~~~  257 (672)
                      |...|++-++-.|..                 .+...--......++.+.|-.+|++-.-- .+...+...+..=...  
T Consensus       160 aRqiferW~~w~P~e-----------------qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~--  220 (677)
T KOG1915|consen  160 ARQIFERWMEWEPDE-----------------QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKH--  220 (677)
T ss_pred             HHHHHHHHHcCCCcH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhc--
Confidence            888887765532210                 11111112233455667777777775443 3556666666665555  


Q ss_pred             CcccCHHHHHHHHHHHHHc-CCH----HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCC
Q 005877          258 GLRRDRTKALMWFSKAADK-GEP----QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ---QLYSAYNGIGYLYVKGY  329 (672)
Q Consensus       258 ~~~~~~~~A~~~~~~a~~~-~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~  329 (672)
                         ++...|...|++|++. ++.    ......+..=..    ++.++.|.-.|+-|++.   +.+.-++.-=.......
T Consensus       221 ---g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~----qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqf  293 (677)
T KOG1915|consen  221 ---GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER----QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQF  293 (677)
T ss_pred             ---CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence               4888888888888874 321    122223333333    67888888888888874   33333332222222222


Q ss_pred             CCCcCCHHHHHH-----HHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHH---------HHHH
Q 005877          330 GVEKKNYTKAKE-----YFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK---------AFYQ  393 (672)
Q Consensus       330 g~~~~~~~~A~~-----~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~---------a~~~  393 (672)
                      |... -.+.++.     -|++-+..+  |.++++-+-.+-..    .|+.+.-.+.|++|+..-++.         .+.+
T Consensus       294 Gd~~-gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~----~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLW  368 (677)
T KOG1915|consen  294 GDKE-GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES----VGDKDRIRETYERAIANVPPASEKRYWRRYIYLW  368 (677)
T ss_pred             cchh-hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence            2211 3344443     344444443  77888887777777    788999999999997654331         1122


Q ss_pred             HHHHHHcCCCccCCHHHHHHHHHHHHHcCChh----H--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005877          394 LAKMFHTGVGLKKNLHMATALYKLVAERGPWS----S--LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILD  467 (672)
Q Consensus       394 L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----a--~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~  467 (672)
                      +-.++..- -..+|.+.+...|+.+++.-|-.    +  +...+.......+...|...+-.|+-.-...- .--+++-.
T Consensus       369 inYalyeE-le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIel  446 (677)
T KOG1915|consen  369 INYALYEE-LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIEL  446 (677)
T ss_pred             HHHHHHHH-HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHH
Confidence            22221110 13678899999999998865421    2  22233334455677888888777754422111 11122111


Q ss_pred             HhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC---HHH
Q 005877          468 KYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSN---AQA  542 (672)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~---~~a  542 (672)
                      .              ...+++++...+|++-++-++  -.++...|.+-.    ..+|.++|...|+.|+.+..   |.-
T Consensus       447 E--------------lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~----~LgdtdRaRaifelAi~qp~ldmpel  508 (677)
T KOG1915|consen  447 E--------------LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELET----SLGDTDRARAIFELAISQPALDMPEL  508 (677)
T ss_pred             H--------------HHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH----HhhhHHHHHHHHHHHhcCcccccHHH
Confidence            1              115578888999998777665  445666676666    78999999999999998643   332


Q ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          543 MFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       543 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      +.. +++=.  .--.+.+++|...|++-++..+-.
T Consensus       509 lwk-aYIdF--Ei~~~E~ekaR~LYerlL~rt~h~  540 (677)
T KOG1915|consen  509 LWK-AYIDF--EIEEGEFEKARALYERLLDRTQHV  540 (677)
T ss_pred             HHH-Hhhhh--hhhcchHHHHHHHHHHHHHhcccc
Confidence            222 22211  112688999999999998876553

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.17  E-value=0.013  Score=60.54  Aligned_cols=378  Identities=13%  Similarity=0.045  Sum_probs=251.1

Q ss_pred             cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhH
Q 005877          141 ERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA  218 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  218 (672)
                      ++++.+|...|++|++.  .+....+..+.+-++.+...-|...+.+++.+-|.--                .....--.
T Consensus        86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd----------------qlWyKY~y  149 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD----------------QLWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH----------------HHHHHHHH
Confidence            78999999999999985  5677788888888888999999999999998755311                11111222


Q ss_pred             hhhccCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCc
Q 005877          219 LRKSRGEDDEAFQILEYQAQKG-NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGAGVE  296 (672)
Q Consensus       219 ~~~~~g~~~~Ai~~~~~aa~~~-~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~  296 (672)
                      +...+|+..-|-+.|++-.+-. +..+....-..=+.-     ++.+.|...|++-+-- .+...+...+..=..    -
T Consensus       150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRy-----keieraR~IYerfV~~HP~v~~wikyarFE~k----~  220 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRY-----KEIERARSIYERFVLVHPKVSNWIKYARFEEK----H  220 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-----hHHHHHHHHHHHHheecccHHHHHHHHHHHHh----c
Confidence            3346788999999999987663 556665555444433     4889999999997643 334445555555555    6


Q ss_pred             CCHHHHHHHHHHHHHc-CC--HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCCchh
Q 005877          297 RNYTKALEWLTHAARQ-QL--YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---EEAGGHYNLGVMYYKGIGVKR  370 (672)
Q Consensus       297 ~~~~~A~~~~~~a~~~-~~--~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~  370 (672)
                      |+..-|...|++|++. ++  .....-.+...+.   -.++.++.|.-.|+-|++.   +.+.-.+.-=..+.+..|-..
T Consensus       221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fE---e~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~  297 (677)
T KOG1915|consen  221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFE---ERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKE  297 (677)
T ss_pred             CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchh
Confidence            8899999999999874 22  1122222322221   0144888899999999875   444444433334444333233


Q ss_pred             cHHHHHH-----HHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhH---------HHHHHHHH
Q 005877          371 DVKLACK-----YFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSS---------LSRWALES  434 (672)
Q Consensus       371 ~~~~A~~-----~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a---------~~~lg~~~  434 (672)
                      -.+.++.     -|++-++.+  +-++++..-.+-+.    .++.+.-.+.|++|+...||..         +.++-.++
T Consensus       298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~----~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYal  373 (677)
T KOG1915|consen  298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES----VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYAL  373 (677)
T ss_pred             hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence            3344432     345544433  66888887777776    7999999999999998876532         33343343


Q ss_pred             H---hcCCHHHHHHHHHHHHHcC----CHHH--HHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHH
Q 005877          435 Y---LKGDVGKAFLLYSRMAELG----YEVA--QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEH  505 (672)
Q Consensus       435 ~---~~g~~~~A~~~~~~a~~~g----~~~a--~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  505 (672)
                      +   ...|.+.+...|+.+++.=    ..-+  +.-+|...-+                +.++..|.+.+-.|+-.-+.+
T Consensus       374 yeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR----------------q~~l~~ARkiLG~AIG~cPK~  437 (677)
T KOG1915|consen  374 YEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR----------------QLNLTGARKILGNAIGKCPKD  437 (677)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH----------------HcccHHHHHHHHHHhccCCch
Confidence            3   4579999999999998862    1222  2223333222                557778888887777666654


Q ss_pred             HHH-HHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877          506 AAL-LIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD  574 (672)
Q Consensus       506 a~~-~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  574 (672)
                      -.+ ..-.+-.    ..+++++....|++-++-  .+..++...|.+-..    .||-+.|...|+.|+...
T Consensus       438 KlFk~YIelEl----qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~----LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  438 KLFKGYIELEL----QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETS----LGDTDRARAIFELAISQP  501 (677)
T ss_pred             hHHHHHHHHHH----HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH----hhhHHHHHHHHHHHhcCc
Confidence            444 2222222    568999999999999884  566676666666444    899999999999999875

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.16  E-value=5.7e-05  Score=64.97  Aligned_cols=93  Identities=22%  Similarity=0.101  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--  424 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--  424 (672)
                      |.++|++|.++..    .|+.++|+.+|++++..|.     ..++..+|..+..    .|++++|+.+++++++..|.  
T Consensus         1 ~~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~----LG~~deA~~~L~~~~~~~p~~~   72 (120)
T PF12688_consen    1 PRALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN----LGRYDEALALLEEALEEFPDDE   72 (120)
T ss_pred             CchHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcc
Confidence            3578889999988    8999999999999988652     3577889988887    89999999999999877443  


Q ss_pred             ---hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877          425 ---SSLSRWALESYLKGDVGKAFLLYSRMAE  452 (672)
Q Consensus       425 ---~a~~~lg~~~~~~g~~~~A~~~~~~a~~  452 (672)
                         .....++..++..|++++|+.++..++.
T Consensus        73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   73 LNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               3455678888999999999999988764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.15  E-value=0.019  Score=61.53  Aligned_cols=371  Identities=13%  Similarity=0.073  Sum_probs=224.2

Q ss_pred             HHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-----CCH---HHH--H-------HHHHHHhcc------CCHHHHHHHH
Q 005877          127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-----GNI---QSK--M-------AVAYTYLRQ------DMHDKAVKLY  183 (672)
Q Consensus       127 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-----~~~---~a~--~-------~Lg~~y~~~------~~~~~A~~~y  183 (672)
                      +..|+..|..    .+.+++|...|++++..     +..   +++  +       .++..-...      -+.+-....|
T Consensus       251 w~SLAdYYIr----~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~  326 (835)
T KOG2047|consen  251 WCSLADYYIR----SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF  326 (835)
T ss_pred             HHHHHHHHHH----hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence            4456666766    88999999999999763     111   111  1       111000011      1334445566


Q ss_pred             HHHHHHHHhhhhccCCCCcccchhc---ccCchhhhhHhhhccCChHHHHHHHHHHHHcCCH--------HHHHHHHHHH
Q 005877          184 AELAEIAVNSFLISKDSPVIEPIRI---HNGAEENKGALRKSRGEDDEAFQILEYQAQKGNA--------GAMYKIGLFY  252 (672)
Q Consensus       184 ~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~--------~a~~~Lg~~y  252 (672)
                      +.+++..+-.         ...+.+   ........-.+....|+..+-+..|..++..-+|        .....+|.+|
T Consensus       327 e~lm~rr~~~---------lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklY  397 (835)
T KOG2047|consen  327 ESLMNRRPLL---------LNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLY  397 (835)
T ss_pred             HHHHhccchH---------HHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHH
Confidence            6665543211         011111   1122233445566788899999999998766333        4677889999


Q ss_pred             HhcCCCcccCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----------CHH
Q 005877          253 YFGLRGLRRDRTKALMWFSKAADKGE------PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----------LYS  316 (672)
Q Consensus       253 ~~~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------~~~  316 (672)
                      ...     ++.+.|...|+++.+-..      +..+...|.+=.+    .++++.|++..++|....          .-.
T Consensus       398 e~~-----~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr----h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p  468 (835)
T KOG2047|consen  398 ENN-----GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR----HENFEAALKLMRRATHVPTNPELEYYDNSEP  468 (835)
T ss_pred             Hhc-----CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh----hhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence            888     499999999999988532      5667777888777    889999999999987432          111


Q ss_pred             HHHHHH------HHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCH
Q 005877          317 AYNGIG------YLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ  388 (672)
Q Consensus       317 a~~~Lg------~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~  388 (672)
                      ++..|-      .+|..- .-.-|-++.-...|.+.++.  -.|..-.|.|..+..    ..-++++.+.|++.+..-.+
T Consensus       469 vQ~rlhrSlkiWs~y~Dl-eEs~gtfestk~vYdriidLriaTPqii~NyAmfLEe----h~yfeesFk~YErgI~LFk~  543 (835)
T KOG2047|consen  469 VQARLHRSLKIWSMYADL-EESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE----HKYFEESFKAYERGISLFKW  543 (835)
T ss_pred             HHHHHHHhHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hHHHHHHHHHHHcCCccCCC
Confidence            222221      122100 00013445555667777665  478888999999988    88899999999998886544


Q ss_pred             HHHHHHHHHHHcCC---CccCCHHHHHHHHHHHHHcCChhH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHH
Q 005877          389 KAFYQLAKMFHTGV---GLKKNLHMATALYKLVAERGPWSS----LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSN  461 (672)
Q Consensus       389 ~a~~~L~~~y~~g~---g~~~~~~~A~~~~~~a~~~~~~~a----~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~n  461 (672)
                      +..+.+=..|..-.   -.....+.|..+|+++++..|+..    +...+..-.+-|--..|++.|++|...-.+..+..
T Consensus       544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~  623 (835)
T KOG2047|consen  544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLD  623 (835)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHH
Confidence            33333322222100   115678999999999999888653    22333333455888999999999976655444433


Q ss_pred             HHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877          462 AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ  537 (672)
Q Consensus       462 la~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~  537 (672)
                      +=.+|-+.-.     ..-|++.       -..+|++|++.-+    .....+.+++=-    ..|..++|...|.-+.+.
T Consensus       624 myni~I~kaa-----e~yGv~~-------TR~iYekaIe~Lp~~~~r~mclrFAdlEt----klGEidRARaIya~~sq~  687 (835)
T KOG2047|consen  624 MYNIYIKKAA-----EIYGVPR-------TREIYEKAIESLPDSKAREMCLRFADLET----KLGEIDRARAIYAHGSQI  687 (835)
T ss_pred             HHHHHHHHHH-----HHhCCcc-------cHHHHHHHHHhCChHHHHHHHHHHHHHhh----hhhhHHHHHHHHHhhhhc
Confidence            3333322000     0001122       2234555544422    233457777766    788999999999888776


Q ss_pred             CCH
Q 005877          538 SNA  540 (672)
Q Consensus       538 ~~~  540 (672)
                      .+|
T Consensus       688 ~dP  690 (835)
T KOG2047|consen  688 CDP  690 (835)
T ss_pred             CCC
Confidence            544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.15  E-value=2.7e-05  Score=78.57  Aligned_cols=215  Identities=13%  Similarity=0.046  Sum_probs=148.4

Q ss_pred             hhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 005877          215 NKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GEPQSMEFLGEIYA  290 (672)
Q Consensus       215 ~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~  290 (672)
                      .+...+..+|+++..+....... .....+...++..+...     .+.++++.-++..+..    .++......|.++.
T Consensus        40 ~~~Rs~iAlg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~-----~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~  113 (290)
T PF04733_consen   40 YQYRSYIALGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSP-----SDKESALEELKELLADQAGESNEIVQLLAATILF  113 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTS-----TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCChhHHHHHhccCC-ChhHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            35566778888887776665433 33455666676665432     3666777666654432    24556677778888


Q ss_pred             cCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchh
Q 005877          291 RGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKR  370 (672)
Q Consensus       291 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~  370 (672)
                      .    .+++++|++.+.+.   ++.++....-.+|+.     .++++.|.+.++..-+.++.....+|+..|..-.....
T Consensus       114 ~----~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~-----~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  114 H----EGDYEEALKLLHKG---GSLELLALAVQILLK-----MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGE  181 (290)
T ss_dssp             C----CCHHHHHHCCCTTT---TCHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTT
T ss_pred             H----cCCHHHHHHHHHcc---CcccHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCch
Confidence            7    89999999988875   667777666777775     56899999999998888777777777766544111136


Q ss_pred             cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCH-HHHHH
Q 005877          371 DVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDV-GKAFL  445 (672)
Q Consensus       371 ~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~-~~A~~  445 (672)
                      .+.+|...|+...+.  ..+..++.++.++..    .+++++|.+.++++++.+  +++++.++..+....|+. +.+.+
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~  257 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAER  257 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHH
Confidence            789999999997765  356777788888887    899999999999998776  466788888888888877 55555


Q ss_pred             HHHHHH
Q 005877          446 LYSRMA  451 (672)
Q Consensus       446 ~~~~a~  451 (672)
                      ++.+..
T Consensus       258 ~l~qL~  263 (290)
T PF04733_consen  258 YLSQLK  263 (290)
T ss_dssp             HHHHCH
T ss_pred             HHHHHH
Confidence            665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.14  E-value=9.1e-05  Score=69.11  Aligned_cols=79  Identities=23%  Similarity=0.284  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--
Q 005877          277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--  349 (672)
Q Consensus       277 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--  349 (672)
                      ..+.+++.+|..|..    .+++++|+.+|+++++..     .+.++..+|.++..     .|++++|+.+++++++.  
T Consensus        33 ~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p  103 (172)
T PRK02603         33 KEAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-----NGEHDKALEYYHQALELNP  103 (172)
T ss_pred             hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCc
Confidence            445666777777776    777777777777777532     13566777777764     45777777777777664  


Q ss_pred             CCHHHHHHHHHHHHc
Q 005877          350 EEAGGHYNLGVMYYK  364 (672)
Q Consensus       350 ~~~~a~~~Lg~~y~~  364 (672)
                      +++.++..+|.+|..
T Consensus       104 ~~~~~~~~lg~~~~~  118 (172)
T PRK02603        104 KQPSALNNIAVIYHK  118 (172)
T ss_pred             ccHHHHHHHHHHHHH
Confidence            356666677777665

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.12  E-value=0.00012  Score=75.60  Aligned_cols=147  Identities=11%  Similarity=-0.037  Sum_probs=93.3

Q ss_pred             CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHH
Q 005877           84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQ  161 (672)
Q Consensus        84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~  161 (672)
                      .++.+...+.........   .+  ..+..++-+..+++-+.++|..+..+..    .+++++|...+...+.  ++|+.
T Consensus       271 ~~~~~~~~~r~~~~~~~~---~~--~~~~~~~~~~~~~~~~aa~YG~A~~~~~----~~~~d~A~~~l~~L~~~~P~N~~  341 (484)
T COG4783         271 SPDFQLARARIRAKYEAL---PN--QQAADLLAKRSKRGGLAAQYGRALQTYL----AGQYDEALKLLQPLIAAQPDNPY  341 (484)
T ss_pred             CccHHHHHHHHHHHhccc---cc--cchHHHHHHHhCccchHHHHHHHHHHHH----hcccchHHHHHHHHHHhCCCCHH
Confidence            344555555554333211   11  2334444444447888999999998887    8899999999988665  79999


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--
Q 005877          162 SKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--  239 (672)
Q Consensus       162 a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--  239 (672)
                      .+-..+.++...++..+|++.+++++...|...                ....+.+..+.+.|++++||.+++.....  
T Consensus       342 ~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~----------------~l~~~~a~all~~g~~~eai~~L~~~~~~~p  405 (484)
T COG4783         342 YLELAGDILLEANKAKEAIERLKKALALDPNSP----------------LLQLNLAQALLKGGKPQEAIRILNRYLFNDP  405 (484)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence            999999999999999999999999987543311                11123444455555555555555544322  


Q ss_pred             CCHHHHHHHHHHHHhc
Q 005877          240 GNAGAMYKIGLFYYFG  255 (672)
Q Consensus       240 ~~~~a~~~Lg~~y~~~  255 (672)
                      .++..+..|++.|-..
T Consensus       406 ~dp~~w~~LAqay~~~  421 (484)
T COG4783         406 EDPNGWDLLAQAYAEL  421 (484)
T ss_pred             CCchHHHHHHHHHHHh
Confidence            3555555555555443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.12  E-value=8.6e-05  Score=68.97  Aligned_cols=93  Identities=16%  Similarity=0.167  Sum_probs=58.2

Q ss_pred             CHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHcCCCcc
Q 005877          335 NYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G---HQKAFYQLAKMFHTGVGLK  405 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~---~~~a~~~L~~~y~~g~g~~  405 (672)
                      ++..+..++...++.    ..+.+++++|.++..    .+++++|+.+|++++..  +   .+.+++++|.++..    .
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~----~   85 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS----N   85 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH----c
Confidence            445555555444322    134566777777777    67777777777777654  2   12467777777776    7


Q ss_pred             CCHHHHHHHHHHHHHcCC--hhHHHHHHHHHH
Q 005877          406 KNLHMATALYKLVAERGP--WSSLSRWALESY  435 (672)
Q Consensus       406 ~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~  435 (672)
                      +++++|+.+|+++++..+  ..++..+|.++.
T Consensus        86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         86 GEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            777777777777776653  344555666655

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.11  E-value=0.0001  Score=66.52  Aligned_cols=50  Identities=18%  Similarity=0.093  Sum_probs=36.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          405 KKNLHMATALYKLVAERGPW-----SSLSRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       405 ~~~~~~A~~~~~~a~~~~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      .++..++...+++.++..+.     .+.+.+|..++..|++++|...|+++++..
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~   78 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA   78 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            56777777777777766543     245667778888888888888888887754

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.10  E-value=4e-05  Score=66.30  Aligned_cols=98  Identities=24%  Similarity=0.283  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005877          457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--N---EHAALLIGDAYYYGRGTQRDYERAAEAY  531 (672)
Q Consensus       457 ~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~lG~~y~~g~g~~~d~~~A~~~~  531 (672)
                      ...+++|..+.+                .+++++|++.+++++...  +   +.+++.+|.+++    ..+++++|+.+|
T Consensus         3 ~~~~~~~~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~   62 (119)
T TIGR02795         3 EAYYDAALLVLK----------------AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY----AQGKYADAAKAF   62 (119)
T ss_pred             HHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH----hhccHHHHHHHH
Confidence            345666766666                778999999999886643  2   578999999999    899999999999


Q ss_pred             HHHHhc--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          532 MHARSQ--S---NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       532 ~~A~~~--~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ++++..  +   .+.+++.+|.++..    .++.++|..+++++++..|++.
T Consensus        63 ~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        63 LAVVKKYPKSPKAPDALLKLGMSLQE----LGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHHCCCCCcccHHHHHHHHHHHH----hCChHHHHHHHHHHHHHCcCCh
Confidence            999863  3   36889999999987    8999999999999999998864

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.09  E-value=0.00094  Score=66.31  Aligned_cols=251  Identities=17%  Similarity=0.082  Sum_probs=160.8

Q ss_pred             cCCHHHHHHHHHHHHHc-CCHHHH-HHHHHHHHcCCCCCcCCHHHHHHHHH----HHHhCCC----HHHHHHHHHHHHcC
Q 005877          296 ERNYTKALEWLTHAARQ-QLYSAY-NGIGYLYVKGYGVEKKNYTKAKEYFE----KAADNEE----AGGHYNLGVMYYKG  365 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~-~~~~a~-~~Lg~~y~~g~g~~~~~~~~A~~~~~----~a~~~~~----~~a~~~Lg~~y~~g  365 (672)
                      ..++++|+....+.++. ++.... ..+|..-.  .+-+.+.+++++.+--    .+.+.++    -.++.+|+..+.. 
T Consensus        19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~--a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~-   95 (518)
T KOG1941|consen   19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVT--AHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK-   95 (518)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhccchh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            67788888877777754 222221 12222111  1112445555554432    2333333    4577888888888 


Q ss_pred             CCchhcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC----h----hHHHHH
Q 005877          366 IGVKRDVKLACKYFLVAANAG-------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----W----SSLSRW  430 (672)
Q Consensus       366 ~g~~~~~~~A~~~~~~A~~~~-------~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~----~a~~~l  430 (672)
                         ..++.+++.+-+-.+...       ......-++..+..    .+-+++++++|++|.+..+    +    .....|
T Consensus        96 ---l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlg----ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~L  168 (518)
T KOG1941|consen   96 ---LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLG----LSVFQKALESFEKALRYAHNNDDAMLELQVCVSL  168 (518)
T ss_pred             ---HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhh----HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhH
Confidence               888888888877655421       12344456666654    7789999999999976542    1    357788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc------CC------HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHH--
Q 005877          431 ALESYLKGDVGKAFLLYSRMAEL------GY------EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW--  496 (672)
Q Consensus       431 g~~~~~~g~~~~A~~~~~~a~~~------g~------~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--  496 (672)
                      |..+-...|++||+.+..+|++.      ++      ..+++.++..|...                +++-.|.++-+  
T Consensus       169 gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~----------------G~LgdA~e~C~Ea  232 (518)
T KOG1941|consen  169 GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLL----------------GRLGDAMECCEEA  232 (518)
T ss_pred             HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHh----------------cccccHHHHHHHH
Confidence            99999999999999999999765      22      23456677777663                33333443333  


Q ss_pred             --HHHhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHcCC-CCCCCHH
Q 005877          497 --QASEQGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--------QSNAQAMFNLGYMHEHGQ-GLPLDLH  561 (672)
Q Consensus       497 --~a~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--------~~~~~a~~~Lg~~y~~g~-g~~~d~~  561 (672)
                        .++..||    +..+.-+|++|.    ..+|.+.|..-|+.|..        ++..+++.-.+.+++.-. ...+.-=
T Consensus       233 ~klal~~Gdra~~arc~~~~aDIyR----~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~C  308 (518)
T KOG1941|consen  233 MKLALQHGDRALQARCLLCFADIYR----SRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNC  308 (518)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHHH----hcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhccccc
Confidence              4677777    445668999999    88999999999999853        234667777777765510 0011224


Q ss_pred             HHHHHHHHHHhcCCC
Q 005877          562 LAKRYYDQALEVDPA  576 (672)
Q Consensus       562 ~A~~~~~~A~~~~~~  576 (672)
                      .|+++-++++++-..
T Consensus       309 rale~n~r~levA~~  323 (518)
T KOG1941|consen  309 RALEFNTRLLEVASS  323 (518)
T ss_pred             chhHHHHHHHHHHHH
Confidence            599999999887543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.09  E-value=1.1e-05  Score=61.63  Aligned_cols=62  Identities=34%  Similarity=0.506  Sum_probs=55.4

Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          508 LLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       508 ~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      +.+|..++    ..+++++|+..|+++++.  +++.+++.||.++..    .|++++|+.+|+++++.+|++
T Consensus         1 ~~~a~~~~----~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALY----QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHH----HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHH----HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCC
Confidence            46788999    899999999999999985  689999999999988    899999999999999999874

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.07  E-value=6.7e-05  Score=64.89  Aligned_cols=93  Identities=17%  Similarity=0.158  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC----
Q 005877          353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--H---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----  423 (672)
Q Consensus       353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----  423 (672)
                      +.++.+|..+..    .+++++|++.|+++++..  +   +.+.+.+|.++..    .+++++|+.+|++++...|    
T Consensus         3 ~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~   74 (119)
T TIGR02795         3 EAYYDAALLVLK----AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAAKAFLAVVKKYPKSPK   74 (119)
T ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHCCCCCc
Confidence            445555555555    556666666665555432  1   3455556666555    5566666666666555431    


Q ss_pred             -hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          424 -WSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       424 -~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                       +.++..+|.++...|++++|+.+++++++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        75 APDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             ccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence             234555566666666666666666665544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.07  E-value=6.1e-05  Score=68.02  Aligned_cols=110  Identities=17%  Similarity=0.093  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHcCCC
Q 005877          334 KNYTKAKEYFEKAADNE--E---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-----QKAFYQLAKMFHTGVG  403 (672)
Q Consensus       334 ~~~~~A~~~~~~a~~~~--~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~L~~~y~~g~g  403 (672)
                      ++..++...+++.++..  .   ..+.+.+|.++..    .+++++|...|+.++....     +.+..+|+.++..   
T Consensus        25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~---   97 (145)
T PF09976_consen   25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ---   97 (145)
T ss_pred             CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH---
Confidence            46677766666666542  2   4566778888888    8889999999988887542     3577888888887   


Q ss_pred             ccCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005877          404 LKKNLHMATALYKLVAERG-PWSSLSRWALESYLKGDVGKAFLLYSRMA  451 (672)
Q Consensus       404 ~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~  451 (672)
                       .+++++|+..++.+.... .+.....+|.++...|++++|+..|++|+
T Consensus        98 -~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   98 -QGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             -cCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence             889999999987643222 23456678999999999999999998873

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.06  E-value=6.3e-05  Score=78.75  Aligned_cols=104  Identities=20%  Similarity=0.106  Sum_probs=73.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCC
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGN  503 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~  503 (672)
                      ...|...+..|++++|+..|.++++.  ++..++.++|.++..                .+++++|+..++++++  +.+
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~----------------~g~~~eAl~~~~~Al~l~P~~   69 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK----------------LGNFTEAVADANKAIELDPSL   69 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCcCC
Confidence            34455666667777777777777544  356666666666665                5566677777766543  456


Q ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 005877          504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHE  551 (672)
Q Consensus       504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~  551 (672)
                      +.+++++|.+|+    ..+++++|+.+|+++++.  +++.+...++.+..
T Consensus        70 ~~a~~~lg~~~~----~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  115 (356)
T PLN03088         70 AKAYLRKGTACM----KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE  115 (356)
T ss_pred             HHHHHHHHHHHH----HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            778888888888    788899999999888764  67888777777743

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.05  E-value=0.0001  Score=68.45  Aligned_cols=94  Identities=20%  Similarity=0.105  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHcCCCCC
Q 005877          262 DRTKALMWFSKAADK----GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--Q---LYSAYNGIGYLYVKGYGVE  332 (672)
Q Consensus       262 ~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~  332 (672)
                      ++..+..++.+.++.    ....+++.+|.++..    .+++++|+.+|++++..  +   .+.++.++|.+|..     
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-----   84 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-----   84 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-----
Confidence            445555555444322    235667888888887    78888888888888755  2   23478888888886     


Q ss_pred             cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 005877          333 KKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYK  364 (672)
Q Consensus       333 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  364 (672)
                      .+++++|+.+|++++..  ....++.++|.+|..
T Consensus        85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~  118 (168)
T CHL00033         85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHY  118 (168)
T ss_pred             cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            56888888888888765  356777778877763

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.04  E-value=9.5e-05  Score=77.43  Aligned_cols=94  Identities=16%  Similarity=0.016  Sum_probs=50.1

Q ss_pred             hhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHH
Q 005877          369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAF  444 (672)
Q Consensus       369 ~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~  444 (672)
                      .+++++|+..|++|++.  +++.+++++|.+|..    .+++++|+..++++++..+  +.+++++|.+++..|++++|+
T Consensus        15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~----~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~   90 (356)
T PLN03088         15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIK----LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK   90 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45555555555555543  244555555555554    5555555555555555542  334555555555556666666


Q ss_pred             HHHHHHHHc--CCHHHHHHHHHHH
Q 005877          445 LLYSRMAEL--GYEVAQSNAAWIL  466 (672)
Q Consensus       445 ~~~~~a~~~--g~~~a~~nla~~l  466 (672)
                      ..|+++++.  ++...+..++.+.
T Consensus        91 ~~~~~al~l~P~~~~~~~~l~~~~  114 (356)
T PLN03088         91 AALEKGASLAPGDSRFTKLIKECD  114 (356)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Confidence            666555443  3445554444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.00  E-value=1.7e-05  Score=64.06  Aligned_cols=78  Identities=14%  Similarity=0.001  Sum_probs=64.1

Q ss_pred             hhhHHHHHHHHHHHH--hCC--ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHhccCCHHHH
Q 005877          105 VRVMEEATSEVESAA--MEG--DPHARSVLGFLYGMGMMRERNKGKAFLYHHFA-AEGGNIQSKMAVAYTYLRQDMHDKA  179 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~--~~~--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A-~~~~~~~a~~~Lg~~y~~~~~~~~A  179 (672)
                      .+++++|+.+|++..  ++.  ++..++.+|.+|..    .+++++|+.++++. ..+.++...+.+|.++...|++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            478999999999943  443  46677888999999    99999999999982 2246788999999999999999999


Q ss_pred             HHHHHHH
Q 005877          180 VKLYAEL  186 (672)
Q Consensus       180 ~~~y~~a  186 (672)
                      ++.|+++
T Consensus        78 i~~l~~~   84 (84)
T PF12895_consen   78 IKALEKA   84 (84)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            9999874

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.00  E-value=0.001  Score=68.99  Aligned_cols=149  Identities=16%  Similarity=0.129  Sum_probs=116.3

Q ss_pred             hCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHH
Q 005877          156 EGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY  235 (672)
Q Consensus       156 ~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~  235 (672)
                      +++-..+++..+..+...+++++|++.++.++...|.+.                ....-.+.++...++.++|++.+++
T Consensus       302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~----------------~~~~~~~~i~~~~nk~~~A~e~~~k  365 (484)
T COG4783         302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP----------------YYLELAGDILLEANKAKEAIERLKK  365 (484)
T ss_pred             CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHH
Confidence            367888999999999999999999999999887654321                1123467888899999999999999


Q ss_pred             HHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877          236 QAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR  311 (672)
Q Consensus       236 aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  311 (672)
                      +...  +.+...+++|+.|+.++     ++.+|+..++....  +.++..+..|+..|..    .|+..+|..-+.    
T Consensus       366 al~l~P~~~~l~~~~a~all~~g-----~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~----~g~~~~a~~A~A----  432 (484)
T COG4783         366 ALALDPNSPLLQLNLAQALLKGG-----KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE----LGNRAEALLARA----  432 (484)
T ss_pred             HHhcCCCccHHHHHHHHHHHhcC-----ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH----hCchHHHHHHHH----
Confidence            8655  56888899999999884     88899999888876  4788899999999988    777666654443    


Q ss_pred             cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877          312 QQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN  349 (672)
Q Consensus       312 ~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~  349 (672)
                                 ..|..     .|++++|+..+.++-+.
T Consensus       433 -----------E~~~~-----~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         433 -----------EGYAL-----AGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             -----------HHHHh-----CCCHHHHHHHHHHHHHh
Confidence                       33332     46888888888888665

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.99  E-value=9.4e-05  Score=71.95  Aligned_cols=105  Identities=19%  Similarity=0.160  Sum_probs=80.4

Q ss_pred             HHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHH
Q 005877          359 GVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALES  434 (672)
Q Consensus       359 g~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~  434 (672)
                      |.-..+    .++|.+|+..|.+|++..  ++..+.+-+..|..    .+.++.|++-++.++..+|  +.+|.+||.+|
T Consensus        88 GN~~m~----~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~  159 (304)
T KOG0553|consen   88 GNKLMK----NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----LGEYEDAVKDCESALSIDPHYSKAYGRLGLAY  159 (304)
T ss_pred             HHHHHH----hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            444455    678888888888888865  56666677777877    8888888888888888885  56788889999


Q ss_pred             HhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC
Q 005877          435 YLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGE  471 (672)
Q Consensus       435 ~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~  471 (672)
                      +.+|++++|+..|+++++.  .++....||.+.-.++++
T Consensus       160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            9899999999999999655  477777777666555433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.98  E-value=0.0014  Score=64.64  Aligned_cols=170  Identities=11%  Similarity=0.039  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CHH
Q 005877          388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAELG-----YEV  457 (672)
Q Consensus       388 ~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g-----~~~  457 (672)
                      +...+..|.-+..    .+++++|+..|++++...|     ..+.+++|.+++..+++++|+.++++.++..     -+.
T Consensus        32 ~~~~Y~~A~~~~~----~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         32 PSEIYATAQQKLQ----DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            3444444444443    4555555555555555443     1233455555555555555555555554431     233


Q ss_pred             HHHHHHHHHHHhCCCCc--ccCCCCCCCchHhHHHHHHHHHHHHhCCC-------------------HHHHHHHHHHHHh
Q 005877          458 AQSNAAWILDKYGEGSM--CMGESGFCTDAERHQCAHSLWWQASEQGN-------------------EHAALLIGDAYYY  516 (672)
Q Consensus       458 a~~nla~~l~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------------------~~a~~~lG~~y~~  516 (672)
                      +++.+|.+....+.+++  +........++....+|+..++.-++.-+                   +.--+.+|..|+ 
T Consensus       108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~-  186 (243)
T PRK10866        108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYT-  186 (243)
T ss_pred             HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            44444444322111100  11111222334445666666665444321                   112346788888 


Q ss_pred             CCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 005877          517 GRGTQRDYERAAEAYMHARSQ-----SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQ  569 (672)
Q Consensus       517 g~g~~~d~~~A~~~~~~A~~~-----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  569 (672)
                         ..++|.-|+.-++..++.     ..++|++.|+..|..    .|..++|..+...
T Consensus       187 ---~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~----lg~~~~a~~~~~~  237 (243)
T PRK10866        187 ---KRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ----LQLNAQADKVAKI  237 (243)
T ss_pred             ---HcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH----cCChHHHHHHHHH
Confidence               789999999999999874     357899999999977    7788888877653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.98  E-value=8.4e-05  Score=60.47  Aligned_cols=94  Identities=31%  Similarity=0.318  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005877          459 QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS  536 (672)
Q Consensus       459 ~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~  536 (672)
                      +.++|.++..                .+++++|+.+++++++..  +..+++.+|.++.    ..+++++|+.+++++++
T Consensus         3 ~~~~a~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~   62 (100)
T cd00189           3 LLNLGNLYYK----------------LGDYDEALEYYEKALELDPDNADAYYNLAAAYY----KLGKYEEALEDYEKALE   62 (100)
T ss_pred             HHHHHHHHHH----------------HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence            4566766665                778999999999887654  4678889999999    78999999999999987


Q ss_pred             c--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          537 Q--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       537 ~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      .  .++.+++.+|.++..    .+++++|..+++++++.+|.
T Consensus        63 ~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          63 LDPDNAKAYYNLGLAYYK----LGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             CCCcchhHHHHHHHHHHH----HHhHHHHHHHHHHHHccCCC
Confidence            4  566789999999887    78999999999999988763

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.0015  Score=62.10  Aligned_cols=72  Identities=25%  Similarity=0.355  Sum_probs=58.5

Q ss_pred             hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          500 EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHAR--SQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       500 ~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~--~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      -.+|.++|..|+.+|.    ..++|.+|.-||++-+  .+-++...-.||.+++. .|..-|+..|.+||.+|++++|.
T Consensus       150 F~~D~EAW~eLaeiY~----~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt-~gg~eN~~~arkyy~~alkl~~~  223 (289)
T KOG3060|consen  150 FMNDQEAWHELAEIYL----SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT-QGGAENLELARKYYERALKLNPK  223 (289)
T ss_pred             hcCcHHHHHHHHHHHH----hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhChH
Confidence            4578888999999999    8899999999999974  45778888888887765 23367899999999999999883

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.00081  Score=62.91  Aligned_cols=190  Identities=22%  Similarity=0.238  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 005877          228 EAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLT  307 (672)
Q Consensus       228 ~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  307 (672)
                      ++.++..++..+..+..-+.    ++.|    ...+++|.+.|.++.+            +|.-    .+++..|=..|.
T Consensus         3 ~a~~l~k~AEkK~~~s~gF~----lfgg----~~k~eeAadl~~~Aan------------~ykl----aK~w~~AG~afl   58 (288)
T KOG1586|consen    3 DAVQLMKKAEKKLNGSGGFL----LFGG----SNKYEEAAELYERAAN------------MYKL----AKNWSAAGDAFL   58 (288)
T ss_pred             cHHHHHHHHHHhcccCCccc----ccCC----CcchHHHHHHHHHHHH------------HHHH----HHhHHHHHHHHH
Confidence            34555555555544433332    2222    1489999999998854            4443    556666666666


Q ss_pred             HHHHc----C----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhc
Q 005877          308 HAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRD  371 (672)
Q Consensus       308 ~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~  371 (672)
                      ++++.    +    -...+...+.+|..      .++++|+.+++++++.    |.    +.-+..||.+|...   ..|
T Consensus        59 kaA~~h~k~~skhDaat~YveA~~cykk------~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd---l~d  129 (288)
T KOG1586|consen   59 KAADLHLKAGSKHDAATTYVEAANCYKK------VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD---LQD  129 (288)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHhhc------cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh---HHH
Confidence            66542    1    34456677788864      4899999999999875    32    33456789999883   589


Q ss_pred             HHHHHHHHHHHHHc--C-C-----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--Ch----h---HHHHHHHHH
Q 005877          372 VKLACKYFLVAANA--G-H-----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PW----S---SLSRWALES  434 (672)
Q Consensus       372 ~~~A~~~~~~A~~~--~-~-----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~----~---a~~~lg~~~  434 (672)
                      +++|+.+|++|.+-  + .     ...+...+..-.    ..++|.+|+..|++++...  +.    .   -++.-|..+
T Consensus       130 ~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa----~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLCh  205 (288)
T KOG1586|consen  130 FEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA----QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCH  205 (288)
T ss_pred             HHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHh
Confidence            99999999999872  2 1     123333443333    3789999999999987654  21    1   234455666


Q ss_pred             HhcCCHHHHHHHHHHHHHcC
Q 005877          435 YLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       435 ~~~g~~~~A~~~~~~a~~~g  454 (672)
                      .-..|.-.+...+++-.+..
T Consensus       206 l~~~D~v~a~~ALeky~~~d  225 (288)
T KOG1586|consen  206 LCKADEVNAQRALEKYQELD  225 (288)
T ss_pred             HhcccHHHHHHHHHHHHhcC
Confidence            66666665555555554443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.95  E-value=9.7e-05  Score=60.09  Aligned_cols=90  Identities=27%  Similarity=0.357  Sum_probs=51.0

Q ss_pred             HHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHH
Q 005877          355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRW  430 (672)
Q Consensus       355 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l  430 (672)
                      ++.+|.++..    .+++++|+.+++++++..  +..+++.+|.++..    .+++++|+.+++++++..+  ...+..+
T Consensus         3 ~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~   74 (100)
T cd00189           3 LLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEALEDYEKALELDPDNAKAYYNL   74 (100)
T ss_pred             HHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence            4555555555    556666666666655432  33455556666555    5566666666666655543  2345555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 005877          431 ALESYLKGDVGKAFLLYSRMAE  452 (672)
Q Consensus       431 g~~~~~~g~~~~A~~~~~~a~~  452 (672)
                      |..+...|++++|..++.++.+
T Consensus        75 ~~~~~~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          75 GLAYYKLGKYEEALEAYEKALE   96 (100)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHc
Confidence            6666666666666666665544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.95  E-value=2.2e-05  Score=59.88  Aligned_cols=61  Identities=15%  Similarity=0.086  Sum_probs=52.3

Q ss_pred             HHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877          128 SVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN  192 (672)
Q Consensus       128 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~  192 (672)
                      +.+|..+..    .+++++|+..|+++++  ++++.+++.+|.++...|++++|+.+|+++++..|.
T Consensus         1 ~~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    1 YALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             ChHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            457888887    8999999999999987  578999999999999999999999999999886543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.93  E-value=0.00016  Score=62.12  Aligned_cols=58  Identities=22%  Similarity=0.194  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005877          390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMA  451 (672)
Q Consensus       390 a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a~  451 (672)
                      +.|++|.++..    .|+.++|+.+|+++++.+.     ..++..+|..+...|++++|+..+++++
T Consensus         3 ~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~   65 (120)
T PF12688_consen    3 ALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL   65 (120)
T ss_pred             hHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44555555554    5555555555555555441     1234445555555555555555554443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.91  E-value=0.011  Score=63.91  Aligned_cols=317  Identities=16%  Similarity=0.084  Sum_probs=170.7

Q ss_pred             hhhHHHHHHHHHHHHhCC-ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 005877          105 VRVMEEATSEVESAAMEG-DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLY  183 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y  183 (672)
                      .+..++|+.+....-+.. -...+-.++.-|.+    .+|++.|.++|.++-...+.      -.+|.+.|.++.|.+.-
T Consensus       745 akew~kai~ildniqdqk~~s~yy~~iadhyan----~~dfe~ae~lf~e~~~~~da------i~my~k~~kw~da~kla  814 (1636)
T KOG3616|consen  745 AKEWKKAISILDNIQDQKTASGYYGEIADHYAN----KGDFEIAEELFTEADLFKDA------IDMYGKAGKWEDAFKLA  814 (1636)
T ss_pred             hhhhhhhHhHHHHhhhhccccccchHHHHHhcc----chhHHHHHHHHHhcchhHHH------HHHHhccccHHHHHHHH
Confidence            467889999988755553 34456678888888    89999999999886443322      23455556666555443


Q ss_pred             HHHHHHHHh--hhhccCCCCcccchhc-ccCchhhhhHhhhccCChHHHHHHHHHH---------HHcCC----HHHHHH
Q 005877          184 AELAEIAVN--SFLISKDSPVIEPIRI-HNGAEENKGALRKSRGEDDEAFQILEYQ---------AQKGN----AGAMYK  247 (672)
Q Consensus       184 ~~a~~~~~~--~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~g~~~~Ai~~~~~a---------a~~~~----~~a~~~  247 (672)
                      .+.......  .+...       ...+ .-+....-..+|..-|.+++||+.|++-         ...-+    .+....
T Consensus       815 ~e~~~~e~t~~~yiak-------aedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~  887 (1636)
T KOG3616|consen  815 EECHGPEATISLYIAK-------AEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH  887 (1636)
T ss_pred             HHhcCchhHHHHHHHh-------HHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHH
Confidence            332110000  00000       0000 0011112233455667777777777762         22212    345556


Q ss_pred             HHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC------CCCcCCHHHHHHHHHHHHHcC-CH--HHH
Q 005877          248 IGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARG------AGVERNYTKALEWLTHAARQQ-LY--SAY  318 (672)
Q Consensus       248 Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g------~g~~~~~~~A~~~~~~a~~~~-~~--~a~  318 (672)
                      +|.-|...     ++.+.|.+.|-++-+-..+.-+|.-..++...      .| -.+.++-.. |-.+-..| ++  ..+
T Consensus       888 f~~e~e~~-----g~lkaae~~flea~d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~-flwaksiggdaavkll  960 (1636)
T KOG3616|consen  888 FAKELEAE-----GDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVA-FLWAKSIGGDAAVKLL  960 (1636)
T ss_pred             HHHHHHhc-----cChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHH-HHHHHhhCcHHHHHHH
Confidence            67666555     58999988887763321111122222222110      00 011111111 11111112 22  234


Q ss_pred             HHHHHHHHc-CCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCH--------H
Q 005877          319 NGIGYLYVK-GYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ--------K  389 (672)
Q Consensus       319 ~~Lg~~y~~-g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~--------~  389 (672)
                      +..|.+... ...-+.+.++-|.++-+-+++..-+..+..++..+..    .|.+++|-+.|-.|++.+..        .
T Consensus       961 nk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~led----egk~edaskhyveaiklntynitwcqavp 1036 (1636)
T KOG3616|consen  961 NKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLED----EGKFEDASKHYVEAIKLNTYNITWCQAVP 1036 (1636)
T ss_pred             HhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhh----ccchhhhhHhhHHHhhcccccchhhhccc
Confidence            555554321 0112345788888888888888889999999999988    89999999999999886531        1


Q ss_pred             HHHHHHHHHHcCCCccCCHHHHHHHHH---------HHHHcCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          390 AFYQLAKMFHTGVGLKKNLHMATALYK---------LVAERGP----WSSLSRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       390 a~~~L~~~y~~g~g~~~~~~~A~~~~~---------~a~~~~~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      +.+.+-.+-.     -...++|+..|-         ++++...    ++.+...+......||+.+|...+.+|-.++
T Consensus      1037 srfd~e~ir~-----gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllrankp~ 1109 (1636)
T KOG3616|consen 1037 SRFDAEFIRA-----GNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANKPD 1109 (1636)
T ss_pred             chhhHHHHHc-----CCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecCCCc
Confidence            2222222211     235566666653         2222222    2334444455567788888888877775554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.90  E-value=3.6e-05  Score=62.19  Aligned_cols=75  Identities=15%  Similarity=0.076  Sum_probs=34.7

Q ss_pred             hcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHH
Q 005877          370 RDVKLACKYFLVAANAGH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKA  443 (672)
Q Consensus       370 ~~~~~A~~~~~~A~~~~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A  443 (672)
                      +++++|+.+|++.++..+    ...++++|.+|..    .+++++|+.++++ .+.+  ++...+.+|.+++..|++++|
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            345555555555444221    2333444555554    5555555555554 2222  233444445555555555555


Q ss_pred             HHHHHH
Q 005877          444 FLLYSR  449 (672)
Q Consensus       444 ~~~~~~  449 (672)
                      +..|++
T Consensus        78 i~~l~~   83 (84)
T PF12895_consen   78 IKALEK   83 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            555554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.90  E-value=0.0013  Score=63.15  Aligned_cols=153  Identities=18%  Similarity=0.194  Sum_probs=91.4

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---
Q 005877          278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---  349 (672)
Q Consensus       278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---  349 (672)
                      .+..++..|.....    .|++.+|+..|++....-     -+.+...+|..+..     .+++++|+..|++-++.   
T Consensus         4 ~~~~lY~~a~~~~~----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-----~~~y~~A~~~~~~fi~~yP~   74 (203)
T PF13525_consen    4 TAEALYQKALEALQ----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-----QGDYEEAIAAYERFIKLYPN   74 (203)
T ss_dssp             -HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHH-TT
T ss_pred             CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHCCC
Confidence            34555666666666    667777777777666531     34566666666664     45677777777666654   


Q ss_pred             --CCHHHHHHHHHHHHcC-------CCchhcHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHcC
Q 005877          350 --EEAGGHYNLGVMYYKG-------IGVKRDVKLACKYFLVAANAGH-------------------QKAFYQLAKMFHTG  401 (672)
Q Consensus       350 --~~~~a~~~Lg~~y~~g-------~g~~~~~~~A~~~~~~A~~~~~-------------------~~a~~~L~~~y~~g  401 (672)
                        ..+.+++.+|.++...       ..-.....+|+..|+..++.-+                   ..--+.+|..|.. 
T Consensus        75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~-  153 (203)
T PF13525_consen   75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK-  153 (203)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence              2345666666665431       0113445567777777665221                   1223456667776 


Q ss_pred             CCccCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCCHHHH
Q 005877          402 VGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKA  443 (672)
Q Consensus       402 ~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g~~~~A  443 (672)
                         .+.+..|+..++.+++.-|     ..++..++..+...|..+.|
T Consensus       154 ---~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  154 ---RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             ---TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             ---cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence               7888899999999888764     34677788888888877644

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.89  E-value=0.0014  Score=62.93  Aligned_cols=168  Identities=17%  Similarity=0.082  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--
Q 005877          351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--  423 (672)
Q Consensus       351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--  423 (672)
                      .+...+..|..++.    .|++.+|+..|++.....     -+.+.+.+|..+..    .+++++|+..+++.++..|  
T Consensus         4 ~~~~lY~~a~~~~~----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~~~~~~fi~~yP~~   75 (203)
T PF13525_consen    4 TAEALYQKALEALQ----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAIAAYERFIKLYPNS   75 (203)
T ss_dssp             -HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH-TT-
T ss_pred             CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCC
Confidence            34455555665555    566666666666665421     24566666666665    5666666666666665543  


Q ss_pred             ---hhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHH
Q 005877          424 ---WSSLSRWALESYLKG-----------DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ  489 (672)
Q Consensus       424 ---~~a~~~lg~~~~~~g-----------~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~  489 (672)
                         +.+++.+|..++...           ...+|+..|+..++.-....                            -..
T Consensus        76 ~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~----------------------------y~~  127 (203)
T PF13525_consen   76 PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE----------------------------YAE  127 (203)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST----------------------------THH
T ss_pred             cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch----------------------------HHH
Confidence               224555555544321           22345555555544311000                            011


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC---HHHHHHHHHHHHcCCCCCCCHHHH
Q 005877          490 CAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN---AQAMFNLGYMHEHGQGLPLDLHLA  563 (672)
Q Consensus       490 ~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~---~~a~~~Lg~~y~~g~g~~~d~~~A  563 (672)
                      +|...... +...-+.--+.+|..|+    ..+.+.-|+..++..++.  +.   .+++..|...|.+    .|+.+.|
T Consensus       128 ~A~~~l~~-l~~~la~~e~~ia~~Y~----~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~----l~~~~~a  197 (203)
T PF13525_consen  128 EAKKRLAE-LRNRLAEHELYIARFYY----KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK----LGLKQAA  197 (203)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHH----CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH----TT-HHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH----hCChHHH
Confidence            11111110 00111223367899999    889999999999999884  32   5778888888876    5555533

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.89  E-value=0.00015  Score=72.04  Aligned_cols=86  Identities=21%  Similarity=0.287  Sum_probs=75.5

Q ss_pred             hHhHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHcCC
Q 005877          485 AERHQCAHSLWWQASEQ--GN---EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--S---NAQAMFNLGYMHEHGQ  554 (672)
Q Consensus       485 ~~~~~~A~~~~~~a~~~--~~---~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~---~~~a~~~Lg~~y~~g~  554 (672)
                      .+++++|+..|+..++.  ++   +++++.+|.+|+    ..+++++|+.+|++.++.  +   .+++++.+|.++..  
T Consensus       156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~----~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~--  229 (263)
T PRK10803        156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY----NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD--  229 (263)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH--
Confidence            45899999999987654  44   689999999999    899999999999999863  3   58999999999986  


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          555 GLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       555 g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                        .+|.++|+..|++.++..|++.
T Consensus       230 --~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        230 --KGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             --cCCHHHHHHHHHHHHHHCcCCH
Confidence              7999999999999999998865

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.87  E-value=0.00028  Score=68.77  Aligned_cols=102  Identities=25%  Similarity=0.102  Sum_probs=62.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC--H
Q 005877          429 RWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN--E  504 (672)
Q Consensus       429 ~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~  504 (672)
                      .-|.-..+.++|.+|+..|.+|++..  +++-+.|-|-.|.+                .+.++.|++--+.++..++  .
T Consensus        86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----------------Lg~~~~AVkDce~Al~iDp~ys  149 (304)
T KOG0553|consen   86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----------------LGEYEDAVKDCESALSIDPHYS  149 (304)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----------------hcchHHHHHHHHHHHhcChHHH
Confidence            34455555566666666666665543  44445555555555                4455556666555544443  5


Q ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q 005877          505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMH  550 (672)
Q Consensus       505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y  550 (672)
                      .++.+||..|+    ..+++.+|++.|++|++.  ++....-+|.+.-
T Consensus       150 kay~RLG~A~~----~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae  193 (304)
T KOG0553|consen  150 KAYGRLGLAYL----ALGKYEEAIEAYKKALELDPDNESYKSNLKIAE  193 (304)
T ss_pred             HHHHHHHHHHH----ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence            56777888887    778888888888888664  5666666666553

>PRK11906 transcriptional regulator; Provisional

Probab=97.86  E-value=0.00076  Score=70.27  Aligned_cols=161  Identities=12%  Similarity=0.056  Sum_probs=122.3

Q ss_pred             HHHHHHHHcCCCCcCCHHHHHHHHHHHH---Hc--CCHHHHHHHHHHHHcC----CCCCcCCHHHHHHHHHHHHhCC--C
Q 005877          283 EFLGEIYARGAGVERNYTKALEWLTHAA---RQ--QLYSAYNGIGYLYVKG----YGVEKKNYTKAKEYFEKAADNE--E  351 (672)
Q Consensus       283 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~---~~--~~~~a~~~Lg~~y~~g----~g~~~~~~~~A~~~~~~a~~~~--~  351 (672)
                      +..|..... .+.+.+.+.|+.+|.+++   +.  +.+.++..++.++...    ......+..+|...-++|++.+  |
T Consensus       259 ylrg~~~~~-~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        259 MLAGKKELY-DFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHHHHhh-ccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            444544432 223678899999999999   43  4688888888887643    3223457889999999999875  8


Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh---H
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS---S  426 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~---a  426 (672)
                      +.++..+|.+...    .++++.|..+|++|...  +.+.+++..|.+...    .|+.++|++..+++++.+|-.   .
T Consensus       338 a~a~~~~g~~~~~----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~~~~~  409 (458)
T PRK11906        338 GKILAIMGLITGL----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRRRKAV  409 (458)
T ss_pred             HHHHHHHHHHHHh----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchhhHHH
Confidence            9999999998777    77899999999999774  578999999998887    899999999999999999854   3


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAE  452 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~  452 (672)
                      ...+-...|-..-.+.|+..|-+-.+
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (458)
T PRK11906        410 VIKECVDMYVPNPLKNNIKLYYKETE  435 (458)
T ss_pred             HHHHHHHHHcCCchhhhHHHHhhccc
Confidence            44444434445567778877765443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.83  E-value=0.00061  Score=74.49  Aligned_cols=124  Identities=15%  Similarity=0.033  Sum_probs=91.1

Q ss_pred             CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh----CCCHHHHHHHHH
Q 005877          439 DVGKAFLLYSRMAE--LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE----QGNEHAALLIGD  512 (672)
Q Consensus       439 ~~~~A~~~~~~a~~--~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lG~  512 (672)
                      +..+|+.+|++|++  +++..++..+++++.....        ....+..+..++....+++..    +.++.++..+|.
T Consensus       357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~--------~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~  428 (517)
T PRK10153        357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHS--------QQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAV  428 (517)
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh--------cCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHH
Confidence            36677777777754  4566666666665533110        001223456667777766433    345677888999


Q ss_pred             HHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          513 AYYYGRGTQRDYERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       513 ~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ++.    ..+++++|...+++|++. .+..++..+|.+++.    .|+.++|..+|++|+.++|...
T Consensus       429 ~~~----~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        429 QAL----VKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HHH----hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCc
Confidence            988    789999999999999886 468899999999987    8999999999999999999854

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.83  E-value=0.00016  Score=71.80  Aligned_cols=99  Identities=16%  Similarity=0.143  Sum_probs=83.1

Q ss_pred             CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCC---hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--
Q 005877           84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGD---PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--  156 (672)
Q Consensus        84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--  156 (672)
                      +....|..+...+..      .+++++|+..|++...  |++   +.+++.||.+|..    .+++++|+.+|++.+.  
T Consensus       141 ~e~~~Y~~A~~l~~~------~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~y  210 (263)
T PRK10803        141 DANTDYNAAIALVQD------KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKNY  210 (263)
T ss_pred             CHHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHC
Confidence            345677777776432      4889999999999554  455   6899999999999    9999999999999986  


Q ss_pred             CC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877          157 GG---NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN  192 (672)
Q Consensus       157 ~~---~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~  192 (672)
                      ++   .+++++.+|.++...|++++|+.+|+++++..|.
T Consensus       211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            44   5799999999999999999999999999886543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.78  E-value=5.6e-05  Score=60.04  Aligned_cols=62  Identities=26%  Similarity=0.306  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----C-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877          504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----S-----NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV  573 (672)
Q Consensus       504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  573 (672)
                      +.++.++|.+|.    ..+++++|+.+|++|++.    +     -+.+++++|.+|..    .||+++|++++++|+++
T Consensus         5 a~~~~~la~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYR----ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHH----HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence            457889999999    899999999999999753    2     25689999999988    89999999999999874

...

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.014  Score=60.56  Aligned_cols=111  Identities=17%  Similarity=0.097  Sum_probs=76.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH---cC---C-----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 005877          240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD---KG---E-----PQSMEFLGEIYARGAGVERNYTKALEWLTH  308 (672)
Q Consensus       240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~---~~---~-----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~  308 (672)
                      +.+.+.+.-.+.++-.     +|+.+|.+.+...--   .|   .     -...++||-|+..    .+.|.-+..+|.+
T Consensus       238 ~s~~~l~LKsq~eY~~-----gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~----~~~y~~~~~~F~k  308 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAH-----GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ----LGCYQASSVLFLK  308 (696)
T ss_pred             CCcHHHHHHHHHHHHh-----cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee----hhhHHHHHHHHHH
Confidence            5666666667766655     488888887765421   12   1     1233678888877    8888888888888


Q ss_pred             HHHc--------------------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 005877          309 AARQ--------------------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYK  364 (672)
Q Consensus       309 a~~~--------------------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  364 (672)
                      |+..                    ...+..+++|..|++     .|.+-.|.++|.+++..  .+|..|..|+.+...
T Consensus       309 AL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh-----~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  309 ALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH-----SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh-----cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            8851                    134567788888876     66888888888888775  578888888866543

>PRK11906 transcriptional regulator; Provisional

Probab=97.70  E-value=0.0017  Score=67.78  Aligned_cols=133  Identities=13%  Similarity=0.057  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 005877          440 VGKAFLLYSRMA-----ELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEHAALLIGD  512 (672)
Q Consensus       440 ~~~A~~~~~~a~-----~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lG~  512 (672)
                      .+.|+.+|.+|+     ++++..++..+|+++....    ..|   ......+..+|...-++|++.  .|+.++..+|.
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~----~~g---~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~  346 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA----LHG---KSELELAAQKALELLDYVSDITTVDGKILAIMGL  346 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH----Hhc---CCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            345555666665     3456777777777765520    111   222467888999999998776  46888899999


Q ss_pred             HHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 005877          513 AYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWI  590 (672)
Q Consensus       513 ~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~~~~~~~~~  590 (672)
                      ++.    -.++++.|..+|++|..  ++.+.+++..|++...    .|+.+.|.+..++|++++|--.-   ..+.++|+
T Consensus       347 ~~~----~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~~~---~~~~~~~~  415 (458)
T PRK11906        347 ITG----LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRRRK---AVVIKECV  415 (458)
T ss_pred             HHH----hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchhhH---HHHHHHHH
Confidence            887    67889999999999976  5789999999999876    89999999999999999997543   33455555

>PRK15331 chaperone protein SicA; Provisional

Probab=97.68  E-value=0.00078  Score=60.40  Aligned_cols=92  Identities=15%  Similarity=0.127  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH--HhC
Q 005877          426 SLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA--SEQ  501 (672)
Q Consensus       426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~  501 (672)
                      ..+..|..++..|++++|...|+-..-.  .++.-...||-++..                ++++++|+..|..+  ...
T Consensus        39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~----------------~k~y~~Ai~~Y~~A~~l~~  102 (165)
T PRK15331         39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL----------------KKQFQKACDLYAVAFTLLK  102 (165)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHccc
Confidence            4566677777777777777777765333  344444455555554                55666666666543  334


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877          502 GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ  537 (672)
Q Consensus       502 ~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~  537 (672)
                      +|+.+.+..|.||.    ..++...|+.+|+.+++.
T Consensus       103 ~dp~p~f~agqC~l----~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        103 NDYRPVFFTGQCQL----LMRKAAKARQCFELVNER  134 (165)
T ss_pred             CCCCccchHHHHHH----HhCCHHHHHHHHHHHHhC
Confidence            55666666666666    666666666666666653

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.67  E-value=0.0052  Score=56.98  Aligned_cols=202  Identities=17%  Similarity=0.093  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh--HHH
Q 005877          353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SLS  428 (672)
Q Consensus       353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~  428 (672)
                      ..++.-|.+|.+    .|=..-|..-|.+++.  +.-+...+.||..+..    .+|++.|.+.|....|.+|..  +..
T Consensus        66 ~l~fERGvlYDS----lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~----a~~fdaa~eaFds~~ELDp~y~Ya~l  137 (297)
T COG4785          66 QLLFERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ----AGNFDAAYEAFDSVLELDPTYNYAHL  137 (297)
T ss_pred             HHHHHhcchhhh----hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh----cccchHHHHHhhhHhccCCcchHHHh
Confidence            344455777777    7777778888887755  5678999999998887    899999999999999998754  677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHH-
Q 005877          429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAA-  507 (672)
Q Consensus       429 ~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~-  507 (672)
                      +.|..+|--|++.-|..-+.+--+.+....... -|+|-.         +.     .-+..+|..-+.+..+..+.+-| 
T Consensus       138 NRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~-LWLYl~---------E~-----k~dP~~A~tnL~qR~~~~d~e~WG  202 (297)
T COG4785         138 NRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS-LWLYLN---------EQ-----KLDPKQAKTNLKQRAEKSDKEQWG  202 (297)
T ss_pred             ccceeeeecCchHhhHHHHHHHHhcCCCChHHH-HHHHHH---------Hh-----hCCHHHHHHHHHHHHHhccHhhhh
Confidence            889999999999999998888766553322222 244432         11     22566777666655555443332 


Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchh
Q 005877          508 LLIGDAYYYGRGTQRDYERAAEAYMHARSQ------SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPV  581 (672)
Q Consensus       508 ~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  581 (672)
                      .++-..|.    .+-..+.+.+-.+.-++.      .-.++.+.||..|..    .|+.+.|...|+.|+..+--..+.-
T Consensus       203 ~~iV~~yL----gkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~----~G~~~~A~~LfKLaiannVynfVE~  274 (297)
T COG4785         203 WNIVEFYL----GKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLS----LGDLDEATALFKLAVANNVYNFVEH  274 (297)
T ss_pred             HHHHHHHH----hhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhHHHHHHH
Confidence            23333333    122222222222221111      125778999999987    8999999999999988664444433


Q ss_pred             HHHH
Q 005877          582 TLAL  585 (672)
Q Consensus       582 ~~~~  585 (672)
                      -.++
T Consensus       275 RyA~  278 (297)
T COG4785         275 RYAL  278 (297)
T ss_pred             HHHH
Confidence            3333

>PRK15331 chaperone protein SicA; Provisional

Probab=97.67  E-value=0.0016  Score=58.40  Aligned_cols=80  Identities=15%  Similarity=0.203  Sum_probs=42.8

Q ss_pred             cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCH
Q 005877          333 KKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNL  408 (672)
Q Consensus       333 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~  408 (672)
                      +|++++|...|+-..-.  .+++-++.||.++..    .+++++|+..|..|..  .+++...++.|.+|..    .++.
T Consensus        50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~----~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~----l~~~  121 (165)
T PRK15331         50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL----KKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL----MRKA  121 (165)
T ss_pred             CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH----hCCH
Confidence            34555555555555433  244445555555555    5555555555555533  3345555555555554    5555


Q ss_pred             HHHHHHHHHHHH
Q 005877          409 HMATALYKLVAE  420 (672)
Q Consensus       409 ~~A~~~~~~a~~  420 (672)
                      ++|...|+.+++
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            555555555555

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.66  E-value=0.00015  Score=57.54  Aligned_cols=59  Identities=36%  Similarity=0.554  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877          317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----E-----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN  384 (672)
Q Consensus       317 a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~  384 (672)
                      +++++|.+|..     .|++++|+.+|+++++.    +     .+.+++++|.+|..    .+++++|+++|+++++
T Consensus         7 ~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRE-----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence            34455555543     34555555555555432    1     13345555555555    5556666666655543

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.62  E-value=0.0023  Score=70.11  Aligned_cols=135  Identities=13%  Similarity=0.078  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCC---cCCHHHHHHHHHHHHhC----CC
Q 005877          281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVE---KKNYTKAKEYFEKAADN----EE  351 (672)
Q Consensus       281 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~---~~~~~~A~~~~~~a~~~----~~  351 (672)
                      .++.-|.-|... +..++..+|+.+|++|++.  +++.++-.++.+|....+..   ..+..++....+++...    .+
T Consensus       341 ~~~lrg~~~~~~-~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~  419 (517)
T PRK10153        341 TLFYQAHHYLNS-GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL  419 (517)
T ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence            334445444431 1245677888888888764  46777777766664321111   11344555666665442    35


Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW  424 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~  424 (672)
                      +.++.-+|.++..    .+++++|...|++|++.+ +..++..+|.++..    .|+.++|++.|++|...+|.
T Consensus       420 ~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        420 PRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             hHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Confidence            6677777777776    778888888888887754 56777788888877    78888888888888877754

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.0012  Score=67.14  Aligned_cols=77  Identities=17%  Similarity=0.073  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCHHHHHHHH
Q 005877          388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMA--ELGYEVAQSNAA  463 (672)
Q Consensus       388 ~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~--~~g~~~a~~nla  463 (672)
                      ..++.||+.++..    .+++.+|+.+..++++.+  |..++++.|.++...|+++.|+..|++++  +++|..+...|.
T Consensus       257 ~~~~lNlA~c~lK----l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~  332 (397)
T KOG0543|consen  257 LACHLNLAACYLK----LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI  332 (397)
T ss_pred             HHHhhHHHHHHHh----hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            4567888888888    889999999999998887  45689999999999999999999999995  456777777777


Q ss_pred             HHHHH
Q 005877          464 WILDK  468 (672)
Q Consensus       464 ~~l~~  468 (672)
                      .+-.+
T Consensus       333 ~l~~k  337 (397)
T KOG0543|consen  333 KLKQK  337 (397)
T ss_pred             HHHHH
Confidence            76554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.0016  Score=64.03  Aligned_cols=103  Identities=12%  Similarity=0.124  Sum_probs=76.6

Q ss_pred             hCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHH
Q 005877          156 EGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY  235 (672)
Q Consensus       156 ~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~  235 (672)
                      +++|++.+..||.+|+..++++.|..-|.++.++                                              
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL----------------------------------------------  185 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL----------------------------------------------  185 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh----------------------------------------------
Confidence            4677777888888888877777777777777652                                              


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877          236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ  312 (672)
Q Consensus       236 aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  312 (672)
                        .+.+++....+|.+++...  -..+..++...|++++..  .+..+.+.||..++.    ++++.+|+..++..++.
T Consensus       186 --~g~n~~~~~g~aeaL~~~a--~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         186 --AGDNPEILLGLAEALYYQA--GQQMTAKARALLRQALALDPANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             --CCCCHHHHHHHHHHHHHhc--CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhc
Confidence              3457777788888777663  335777888888888764  567788888888887    88888888888877765

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.58  E-value=0.042  Score=52.59  Aligned_cols=210  Identities=24%  Similarity=0.218  Sum_probs=126.1

Q ss_pred             CHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCccC
Q 005877          335 NYTKAKEYFEKAADNEE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN----AGHQKAFYQLAKMFHTGVGLKK  406 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~----~~~~~a~~~L~~~y~~g~g~~~  406 (672)
                      ....+...+........    .......+..+..    .+++..+...+.....    ......+..++..+..    .+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  109 (291)
T COG0457          38 ELAEALELLEEALELLPNSDLAGLLLLLALALLK----LGRLEEALELLEKALELELLPNLAEALLNLGLLLEA----LG  109 (291)
T ss_pred             hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH----cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH----Hh
Confidence            33444444444443321    3455555555555    5556666666555543    2234455555555554    55


Q ss_pred             CHHHHHHHHHHHHHcCCh--hHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCCCCcccCC
Q 005877          407 NLHMATALYKLVAERGPW--SSLSRWAL-ESYLKGDVGKAFLLYSRMAELGY-----EVAQSNAAWILDKYGEGSMCMGE  478 (672)
Q Consensus       407 ~~~~A~~~~~~a~~~~~~--~a~~~lg~-~~~~~g~~~~A~~~~~~a~~~g~-----~~a~~nla~~l~~~~~~~~~~~~  478 (672)
                      ++.+++..++++....+.  ......+. .+...|++++|...|.+++....     .......+..+..          
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  179 (291)
T COG0457         110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA----------  179 (291)
T ss_pred             hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----------
Confidence            566666666666654422  23333333 56666777777777776655221     1112222222222          


Q ss_pred             CCCCCchHhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHcC
Q 005877          479 SGFCTDAERHQCAHSLWWQASEQG---NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSN--AQAMFNLGYMHEHG  553 (672)
Q Consensus       479 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~--~~a~~~Lg~~y~~g  553 (672)
                            .++.++|+..+.++....   .......++..+.    ..+++.+|+..+.++.....  ......++..+.. 
T Consensus       180 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-  248 (291)
T COG0457         180 ------LGRYEEALELLEKALKLNPDDDAEALLNLGLLYL----KLGKYEEALEYYEKALELDPDNAEALYNLALLLLE-  248 (291)
T ss_pred             ------hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH----HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH-
Confidence                  446777777777665543   3467778888888    77789999999999987533  5677777877763 


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCC
Q 005877          554 QGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       554 ~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                         .++.+.+...+.+++...|.
T Consensus       249 ---~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         249 ---LGRYEEALEALEKALELDPD  268 (291)
T ss_pred             ---cCCHHHHHHHHHHHHHhCcc
Confidence               55899999999999998887

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.57  E-value=0.044  Score=51.68  Aligned_cols=154  Identities=25%  Similarity=0.231  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Q 005877          265 KALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE  344 (672)
Q Consensus       265 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~  344 (672)
                      +|.+..++|.++..+..-+.    ...|   .+.+++|.+.|.++...            |..     .++++.|=..|.
T Consensus         3 ~a~~l~k~AEkK~~~s~gF~----lfgg---~~k~eeAadl~~~Aan~------------ykl-----aK~w~~AG~afl   58 (288)
T KOG1586|consen    3 DAVQLMKKAEKKLNGSGGFL----LFGG---SNKYEEAAELYERAANM------------YKL-----AKNWSAAGDAFL   58 (288)
T ss_pred             cHHHHHHHHHHhcccCCccc----ccCC---CcchHHHHHHHHHHHHH------------HHH-----HHhHHHHHHHHH
Confidence            35566677766544332222    2222   45899999999987642            322     125555555555


Q ss_pred             HHHhC--------CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCccCCH
Q 005877          345 KAADN--------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNL  408 (672)
Q Consensus       345 ~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~~~~  408 (672)
                      ++++.        +-+..+..-+.+|.+     .|..+|+.+++++++.    |.    +.-...+|.+|+.   -..|+
T Consensus        59 kaA~~h~k~~skhDaat~YveA~~cykk-----~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs---dl~d~  130 (288)
T KOG1586|consen   59 KAADLHLKAGSKHDAATTYVEAANCYKK-----VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES---DLQDF  130 (288)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHhhc-----cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh---hHHHH
Confidence            55542        234455566777765     5999999999999873    31    2334577888887   24889


Q ss_pred             HHHHHHHHHHHHcCC---hh-----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877          409 HMATALYKLVAERGP---WS-----SLSRWALESYLKGDVGKAFLLYSRM  450 (672)
Q Consensus       409 ~~A~~~~~~a~~~~~---~~-----a~~~lg~~~~~~g~~~~A~~~~~~a  450 (672)
                      ++|+.+|+++.+--.   ..     .+...+...-..++|.+|+..|++.
T Consensus       131 ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv  180 (288)
T KOG1586|consen  131 EKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV  180 (288)
T ss_pred             HHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998887431   11     1222333333445555555555554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.031  Score=53.83  Aligned_cols=226  Identities=13%  Similarity=0.010  Sum_probs=145.7

Q ss_pred             hhccCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCC
Q 005877          220 RKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERN  298 (672)
Q Consensus       220 ~~~~g~~~~Ai~~~~~aa~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~  298 (672)
                      ++..|+|..+|..-++.... +++.--..+.+.|+..|     .+..-+.-.+.+- .....+...++.....    +++
T Consensus        18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg-----~~~~~~~eI~~~~-~~~lqAvr~~a~~~~~----e~~   87 (299)
T KOG3081|consen   18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALG-----QYQIVISEIKEGK-ATPLQAVRLLAEYLEL----ESN   87 (299)
T ss_pred             HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcc-----ccccccccccccc-CChHHHHHHHHHHhhC----cch
Confidence            45678899999888876555 77777778888887774     2222221111111 1223344455555554    555


Q ss_pred             HHHHHHH-HHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHH
Q 005877          299 YTKALEW-LTHAARQ---QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKL  374 (672)
Q Consensus       299 ~~~A~~~-~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~  374 (672)
                      .+.-+.- ++..+..   .+...+..-+.+|.+     .+++++|++...+   .++-++...=-.++.+    ....+-
T Consensus        88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~-----~~~~deAl~~~~~---~~~lE~~Al~VqI~lk----~~r~d~  155 (299)
T KOG3081|consen   88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMH-----DGDFDEALKALHL---GENLEAAALNVQILLK----MHRFDL  155 (299)
T ss_pred             hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc-----CCChHHHHHHHhc---cchHHHHHHHHHHHHH----HHHHHH
Confidence            4444333 3333332   243455555667765     4699999998887   3344444444455666    678888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877          375 ACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMAE  452 (672)
Q Consensus       375 A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~~  452 (672)
                      |.+..++..+..+......||..+..-.+-...+..|.-+|+...+.-++  ..+...+.+....|++++|...++.|++
T Consensus       156 A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~  235 (299)
T KOG3081|consen  156 AEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD  235 (299)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence            88888888887776666667766554332344599999999999986644  4566677788899999999999999987


Q ss_pred             c--CCHHHHHHHHHHHH
Q 005877          453 L--GYEVAQSNAAWILD  467 (672)
Q Consensus       453 ~--g~~~a~~nla~~l~  467 (672)
                      .  ++++.+.|+-.+-.
T Consensus       236 kd~~dpetL~Nliv~a~  252 (299)
T KOG3081|consen  236 KDAKDPETLANLIVLAL  252 (299)
T ss_pred             ccCCCHHHHHHHHHHHH
Confidence            6  47888887655433

>smart00671 SEL1 Sel1-like repeats

Probab=97.54  E-value=0.00015  Score=47.68  Aligned_cols=34  Identities=44%  Similarity=0.658  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877          541 QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD  574 (672)
Q Consensus       541 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  574 (672)
                      .++++||.+|..|.|+++|..+|+.||++|.+.+
T Consensus         2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g   35 (36)
T smart00671        2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG   35 (36)
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence            4666777777777777777777777777776654

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.50  E-value=0.00034  Score=72.68  Aligned_cols=68  Identities=15%  Similarity=0.135  Sum_probs=61.5

Q ss_pred             HhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHH---HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877          499 SEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQ---AMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV  573 (672)
Q Consensus       499 ~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~---a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  573 (672)
                      .+++++.+++++|..|+    ..++|++|+.+|++|++.  +++.   +++|+|.+|..    .|+.++|+.++++|++.
T Consensus        70 ~dP~~a~a~~NLG~AL~----~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLF----SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            46788999999999999    899999999999999875  6664   49999999988    89999999999999997


Q ss_pred             C
Q 005877          574 D  574 (672)
Q Consensus       574 ~  574 (672)
                      +
T Consensus       142 s  142 (453)
T PLN03098        142 Y  142 (453)
T ss_pred             c
Confidence            3

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.002  Score=63.24  Aligned_cols=112  Identities=21%  Similarity=0.204  Sum_probs=88.6

Q ss_pred             HHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcc---CCHHHHH
Q 005877          108 MEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQ---DMHDKAV  180 (672)
Q Consensus       108 ~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~---~~~~~A~  180 (672)
                      .++-+.-++.  ..+|+|++.+..||.+|..    .++...|...|.+|.+  ++|++.+..+|.++..+   .+..++.
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~  213 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR  213 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence            4455555555  5678999999999999999    9999999999999987  68999999999988763   3455666


Q ss_pred             HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 005877          181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR  260 (672)
Q Consensus       181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~  260 (672)
                      ..+++++..                                                ++.|+.+.+.||..++..     
T Consensus       214 ~ll~~al~~------------------------------------------------D~~~iral~lLA~~afe~-----  240 (287)
T COG4235         214 ALLRQALAL------------------------------------------------DPANIRALSLLAFAAFEQ-----  240 (287)
T ss_pred             HHHHHHHhc------------------------------------------------CCccHHHHHHHHHHHHHc-----
Confidence            666666552                                                446888888888888887     


Q ss_pred             cCHHHHHHHHHHHHHc
Q 005877          261 RDRTKALMWFSKAADK  276 (672)
Q Consensus       261 ~~~~~A~~~~~~a~~~  276 (672)
                      +|+.+|+..++..++.
T Consensus       241 g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         241 GDYAEAAAAWQMLLDL  256 (287)
T ss_pred             ccHHHHHHHHHHHHhc
Confidence            4888888888887774

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.00094  Score=67.94  Aligned_cols=120  Identities=20%  Similarity=0.243  Sum_probs=84.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHH
Q 005877          429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAAL  508 (672)
Q Consensus       429 ~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~  508 (672)
                      .-|..+++.|+|..|...|++|+..=..           .          .  ..+.+.-.++        ..--...+.
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~-----------~----------~--~~~~ee~~~~--------~~~k~~~~l  261 (397)
T KOG0543|consen  213 ERGNVLFKEGKFKLAKKRYERAVSFLEY-----------R----------R--SFDEEEQKKA--------EALKLACHL  261 (397)
T ss_pred             HhhhHHHhhchHHHHHHHHHHHHHHhhc-----------c----------c--cCCHHHHHHH--------HHHHHHHhh
Confidence            4577788899999999999888653100           0          0  0001111111        111123567


Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 005877          509 LIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALT  586 (672)
Q Consensus       509 ~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~~~~~  586 (672)
                      ||+.+|.    +.++|.+|+++-.++++.  +|..|+|.-|.++..    .++++.|+..|++|+++.|++. .+...+.
T Consensus       262 NlA~c~l----Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~~df~ka~k~~P~Nk-a~~~el~  332 (397)
T KOG0543|consen  262 NLAACYL----KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA----LGEYDLARDDFQKALKLEPSNK-AARAELI  332 (397)
T ss_pred             HHHHHHH----hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCcH-HHHHHHH
Confidence            9999999    889999999999999874  789999999999987    8899999999999999999874 3333444


Q ss_pred             HH
Q 005877          587 SL  588 (672)
Q Consensus       587 ~~  588 (672)
                      ++
T Consensus       333 ~l  334 (397)
T KOG0543|consen  333 KL  334 (397)
T ss_pred             HH
Confidence            33

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.42  E-value=0.018  Score=53.48  Aligned_cols=38  Identities=11%  Similarity=0.017  Sum_probs=32.8

Q ss_pred             HHhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877          154 AAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV  191 (672)
Q Consensus       154 A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~  191 (672)
                      |+.+..++..+.||..+...|+++.|.+.|+.+.+.+|
T Consensus        93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp  130 (297)
T COG4785          93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP  130 (297)
T ss_pred             hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence            45688899999999999999999999999998887543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.41  E-value=0.0017  Score=63.03  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=37.9

Q ss_pred             hhcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcC
Q 005877          369 KRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKG  438 (672)
Q Consensus       369 ~~~~~~A~~~~~~A~~~~-----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g  438 (672)
                      .+||..|..-|..-++..     .++|+||||.++..    +++|+.|...|..+++..|     +++++.+|.+...+|
T Consensus       154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~  229 (262)
T COG1729         154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG  229 (262)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence            344444444444444422     23445555555444    4555555555555444332     344555555555555


Q ss_pred             CHHHHHHHHHHHHH
Q 005877          439 DVGKAFLLYSRMAE  452 (672)
Q Consensus       439 ~~~~A~~~~~~a~~  452 (672)
                      +.++|-..|++.++
T Consensus       230 ~~d~A~atl~qv~k  243 (262)
T COG1729         230 NTDEACATLQQVIK  243 (262)
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555554444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.39  E-value=0.32  Score=53.14  Aligned_cols=318  Identities=18%  Similarity=0.120  Sum_probs=143.4

Q ss_pred             hhHhhhccCChHHHHHHHHHH---------HHcCCHHHHHHHHHH----HHhcCCCcccCHHHHHHHHHHHHHcCCHHHH
Q 005877          216 KGALRKSRGEDDEAFQILEYQ---------AQKGNAGAMYKIGLF----YYFGLRGLRRDRTKALMWFSKAADKGEPQSM  282 (672)
Q Consensus       216 ~~~~~~~~g~~~~Ai~~~~~a---------a~~~~~~a~~~Lg~~----y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~  282 (672)
                      -|.++.+..++++|+++|++-         +.-..|.-...|-..    +.+.     ++++.|+..|-.+-..-  .+.
T Consensus       667 agdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~-----~q~daainhfiea~~~~--kai  739 (1636)
T KOG3616|consen  667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQI-----GQLDAAINHFIEANCLI--KAI  739 (1636)
T ss_pred             hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHH-----HhHHHHHHHHHHhhhHH--HHH
Confidence            345555566777777777652         222233333333222    2222     46777777776542110  000


Q ss_pred             HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005877          283 EFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYN-GIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVM  361 (672)
Q Consensus       283 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~-~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~  361 (672)
                          ..-..    .+.+.+|+..+...-++.....++ .++.-|..     +++++-|.++|.++-...++      -.|
T Consensus       740 ----eaai~----akew~kai~ildniqdqk~~s~yy~~iadhyan-----~~dfe~ae~lf~e~~~~~da------i~m  800 (1636)
T KOG3616|consen  740 ----EAAIG----AKEWKKAISILDNIQDQKTASGYYGEIADHYAN-----KGDFEIAEELFTEADLFKDA------IDM  800 (1636)
T ss_pred             ----HHHhh----hhhhhhhHhHHHHhhhhccccccchHHHHHhcc-----chhHHHHHHHHHhcchhHHH------HHH
Confidence                00001    455666666666554444333333 34444543     56777777777665332222      123


Q ss_pred             HHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHH---HHcCC--------CccCCHHHHHHHHHHH---------HHc
Q 005877          362 YYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM---FHTGV--------GLKKNLHMATALYKLV---------AER  421 (672)
Q Consensus       362 y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~---y~~g~--------g~~~~~~~A~~~~~~a---------~~~  421 (672)
                      |-+    .+.+..|.+.-++.-.+....+ .+++..   -..|.        -+-+..++|+..|++.         ++.
T Consensus       801 y~k----~~kw~da~kla~e~~~~e~t~~-~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k  875 (1636)
T KOG3616|consen  801 YGK----AGKWEDAFKLAEECHGPEATIS-LYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEK  875 (1636)
T ss_pred             Hhc----cccHHHHHHHHHHhcCchhHHH-HHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHH
Confidence            333    4444444433333211111111 111111   01111        1366778888888775         222


Q ss_pred             CCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCcccCCCCCCCchHhHHHHHHHHH
Q 005877          422 GPW----SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDK-YGEGSMCMGESGFCTDAERHQCAHSLWW  496 (672)
Q Consensus       422 ~~~----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~  496 (672)
                      .++    +....+|..+...|+...|...|.+|-+-.-..-++.-.-+... ++.   ....+|    .+....-.-+|-
T Consensus       876 ~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayri---aktegg----~n~~k~v~flwa  948 (1636)
T KOG3616|consen  876 HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRI---AKTEGG----ANAEKHVAFLWA  948 (1636)
T ss_pred             hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH---Hhcccc----ccHHHHHHHHHH
Confidence            222    35667788888888888888888766332111111100000000 000   000000    000001111122


Q ss_pred             HHHhCCC-HHHHHHHHHHHHhCC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877          497 QASEQGN-EHAALLIGDAYYYGR---GTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE  572 (672)
Q Consensus       497 ~a~~~~~-~~a~~~lG~~y~~g~---g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  572 (672)
                      +++--+- ...++.+|.+-. |.   -....++-|...-+.+++..-+.....|+..++.    .|.++.|-+.|-.|+.
T Consensus       949 ksiggdaavkllnk~gll~~-~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~led----egk~edaskhyveaik 1023 (1636)
T KOG3616|consen  949 KSIGGDAAVKLLNKHGLLEA-AIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLED----EGKFEDASKHYVEAIK 1023 (1636)
T ss_pred             HhhCcHHHHHHHHhhhhHHH-HhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhh----ccchhhhhHhhHHHhh
Confidence            2111110 111223333221 10   0123455555555556655556666677766665    7888888888888888


Q ss_pred             cCCC
Q 005877          573 VDPA  576 (672)
Q Consensus       573 ~~~~  576 (672)
                      ++.-
T Consensus      1024 lnty 1027 (1636)
T KOG3616|consen 1024 LNTY 1027 (1636)
T ss_pred             cccc
Confidence            7643

>smart00671 SEL1 Sel1-like repeats

Probab=97.37  E-value=0.00033  Score=46.05  Aligned_cols=36  Identities=36%  Similarity=0.579  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 005877          504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSN  539 (672)
Q Consensus       504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~  539 (672)
                      +++++.||.+|..|.|+..|..+|+.||++|++.++
T Consensus         1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~   36 (36)
T smart00671        1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN   36 (36)
T ss_pred             CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence            368899999999999999999999999999998764

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.33  E-value=0.0022  Score=62.24  Aligned_cols=86  Identities=19%  Similarity=0.202  Sum_probs=75.7

Q ss_pred             hHhHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHcCC
Q 005877          485 AERHQCAHSLWWQASEQGN-----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-----SNAQAMFNLGYMHEHGQ  554 (672)
Q Consensus       485 ~~~~~~A~~~~~~a~~~~~-----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~a~~~Lg~~y~~g~  554 (672)
                      .+++..|..-|..-++..+     ++|+|+||.+++    .++|++.|...|...++.     .-|++++.||.+...  
T Consensus       154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y----~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~--  227 (262)
T COG1729         154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY----AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR--  227 (262)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH----hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH--
Confidence            5678999999988777643     899999999999    999999999999999873     348999999999876  


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          555 GLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       555 g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                        .++.++|+..|++.++.-|.+.
T Consensus       228 --l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         228 --LGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             --hcCHHHHHHHHHHHHHHCCCCH
Confidence              8999999999999999888764

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.33  E-value=0.14  Score=48.73  Aligned_cols=211  Identities=22%  Similarity=0.183  Sum_probs=156.9

Q ss_pred             CChHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCC
Q 005877          224 GEDDEAFQILEYQAQKGN----AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD----KGEPQSMEFLGEIYARGAGV  295 (672)
Q Consensus       224 g~~~~Ai~~~~~aa~~~~----~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~  295 (672)
                      +....++..+........    .......+..+...     +++..++..+.....    ......+..+|..+..    
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  107 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKL-----GRLEEALELLEKALELELLPNLAEALLNLGLLLEA----  107 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHc-----ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH----
Confidence            345556666666655542    57777888887776     488999998888864    4567788888888888    


Q ss_pred             cCCHHHHHHHHHHHHHcC--CHHHHHHHHH-HHHcCCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCC
Q 005877          296 ERNYTKALEWLTHAARQQ--LYSAYNGIGY-LYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGHYNLGVMYYKGIG  367 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~-~y~~g~g~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g  367 (672)
                      .+++..++..+.++....  ........+. ++..     .+++++|..+|+++....     .......++..+..   
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  179 (291)
T COG0457         108 LGKYEEALELLEKALALDPDPDLAEALLALGALYE-----LGDYEEALELYEKALELDPELNELAEALLALGALLEA---  179 (291)
T ss_pred             HhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH---
Confidence            888999999999998743  3233333443 4543     569999999999997732     33445555555555   


Q ss_pred             chhcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHH
Q 005877          368 VKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGK  442 (672)
Q Consensus       368 ~~~~~~~A~~~~~~A~~~~---~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~  442 (672)
                       .+++++++..+.++....   .......++..+..    .+++++|+..+..+.+..+.  .....++..+...+++++
T Consensus       180 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (291)
T COG0457         180 -LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK----LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEE  254 (291)
T ss_pred             -hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH----cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHH
Confidence             779999999999998754   35778888888887    77899999999999988864  567777777777778999


Q ss_pred             HHHHHHHHHHcCCH
Q 005877          443 AFLLYSRMAELGYE  456 (672)
Q Consensus       443 A~~~~~~a~~~g~~  456 (672)
                      +...+.++......
T Consensus       255 ~~~~~~~~~~~~~~  268 (291)
T COG0457         255 ALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHhCcc
Confidence            99999998776544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.31  E-value=0.0046  Score=52.48  Aligned_cols=93  Identities=17%  Similarity=0.092  Sum_probs=73.0

Q ss_pred             HHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh------hHHHHH
Q 005877          359 GVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW------SSLSRW  430 (672)
Q Consensus       359 g~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------~a~~~l  430 (672)
                      |.+...    .++.+.|++.|.+++.  +..+.+++|-+..+.-    +++.++|+.-+.++++...+      .++...
T Consensus        50 ~valaE----~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL----q~~~e~ALdDLn~AleLag~~trtacqa~vQR  121 (175)
T KOG4555|consen   50 AIALAE----AGDLDGALELFGQALCLAPERASAYNNRAQALRL----QGDDEEALDDLNKALELAGDQTRTACQAFVQR  121 (175)
T ss_pred             HHHHHh----ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH----cCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            455555    6788888888888876  3567888888888876    78888888888888887632      367788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCHHHH
Q 005877          431 ALESYLKGDVGKAFLLYSRMAELGYEVAQ  459 (672)
Q Consensus       431 g~~~~~~g~~~~A~~~~~~a~~~g~~~a~  459 (672)
                      |.+|-..|+.++|..-|+.|++.|.+.+.
T Consensus       122 g~lyRl~g~dd~AR~DFe~AA~LGS~FAr  150 (175)
T KOG4555|consen  122 GLLYRLLGNDDAARADFEAAAQLGSKFAR  150 (175)
T ss_pred             HHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence            88888899999999999999998877664

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.30  E-value=0.00073  Score=70.33  Aligned_cols=67  Identities=13%  Similarity=-0.058  Sum_probs=56.2

Q ss_pred             HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHH---HHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877          119 AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQS---KMAVAYTYLRQDMHDKAVKLYAELAEI  189 (672)
Q Consensus       119 ~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a---~~~Lg~~y~~~~~~~~A~~~y~~a~~~  189 (672)
                      ++++++.+++++|..|..    .+++++|+.+|++|++  +++.++   ++++|.+|..+|+.++|+.+++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~----lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFS----KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566788888888888888    8889999999998876  566644   899999999999999999999998885

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=97.29  E-value=0.00031  Score=47.16  Aligned_cols=35  Identities=43%  Similarity=0.759  Sum_probs=22.1

Q ss_pred             HHHHHHHH--HHHHcCC-CCCCCHHHHHHHHHHHHhcC
Q 005877          540 AQAMFNLG--YMHEHGQ-GLPLDLHLAKRYYDQALEVD  574 (672)
Q Consensus       540 ~~a~~~Lg--~~y~~g~-g~~~d~~~A~~~~~~A~~~~  574 (672)
                      |.|+++||  .+|..|. |+++|.++|++||++|.+.+
T Consensus         1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g   38 (39)
T PF08238_consen    1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG   38 (39)
T ss_dssp             HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence            45666666  6666665 56666666666666666554

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=97.21  E-value=0.00048  Score=46.20  Aligned_cols=36  Identities=36%  Similarity=0.624  Sum_probs=32.4

Q ss_pred             HHHHHHHH--HHHHhCC-CCCCCHHHHHHHHHHHHhcCC
Q 005877          504 EHAALLIG--DAYYYGR-GTQRDYERAAEAYMHARSQSN  539 (672)
Q Consensus       504 ~~a~~~lG--~~y~~g~-g~~~d~~~A~~~~~~A~~~~~  539 (672)
                      +++++.||  .+|..|. |..+|+++|+.||++|++.+|
T Consensus         1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~   39 (39)
T PF08238_consen    1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH   39 (39)
T ss_dssp             HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred             ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence            57899999  8889999 899999999999999998865

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.10  E-value=0.0088  Score=62.71  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=92.7

Q ss_pred             hhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHH
Q 005877          105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKL  182 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~  182 (672)
                      .++++.|+.++++..... |++...|+.+|..    .++..+|+....+++.  +.+...+...+..+...++++.|++.
T Consensus       182 t~~~~~ai~lle~L~~~~-pev~~~LA~v~l~----~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i  256 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERD-PEVAVLLARVYLL----MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI  256 (395)
T ss_pred             cccHHHHHHHHHHHHhcC-CcHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            467999999999966544 7788899999987    7788999999999997  46788888899999999999999999


Q ss_pred             HHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHH
Q 005877          183 YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY  235 (672)
Q Consensus       183 y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~  235 (672)
                      .+++.+..|..+                ..+..++.+|...|++++|+..+..
T Consensus       257 Ak~av~lsP~~f----------------~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  257 AKKAVELSPSEF----------------ETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHhCchhH----------------HHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            999999877655                3456688888888888888877664

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.07  E-value=0.029  Score=58.88  Aligned_cols=95  Identities=16%  Similarity=0.281  Sum_probs=42.4

Q ss_pred             ccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCH
Q 005877          222 SRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNY  299 (672)
Q Consensus       222 ~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~  299 (672)
                      ..++++.|++.+++..... |+....|+.++...     .+..+|++.+.+++..  .+...+...+..+..    .+++
T Consensus       181 ~t~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~-----~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k~~~  250 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERD-PEVAVLLARVYLLM-----NEEVEAIRLLNEALKENPQDSELLNLQAEFLLS----KKKY  250 (395)
T ss_pred             hcccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhc-----CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCH
Confidence            3344555555555543332 34444455555443     2444555555555442  233344444444444    4444


Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 005877          300 TKALEWLTHAARQ--QLYSAYNGIGYLYV  326 (672)
Q Consensus       300 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  326 (672)
                      +.|+...+++++.  .+..+++.|+.+|.
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi  279 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYI  279 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            4444444444432  23344444444444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.03  E-value=0.0013  Score=50.38  Aligned_cols=49  Identities=22%  Similarity=0.259  Sum_probs=33.8

Q ss_pred             cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877          141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEI  189 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~  189 (672)
                      .+++++|+.+|++++.  +++.++.+.||.+|...|++++|...++++...
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4667777777777655  667777777777777777777777777766543

...

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.02  E-value=0.36  Score=46.75  Aligned_cols=247  Identities=13%  Similarity=0.042  Sum_probs=147.0

Q ss_pred             cCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHH
Q 005877          296 ERNYTKALEWLTHAARQ-QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKL  374 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~  374 (672)
                      .|+|.+++..-++.-.. +..+-...+...|+.     .|.+..-+.-...+. .....+...++.....    +++.++
T Consensus        21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylA-----lg~~~~~~~eI~~~~-~~~lqAvr~~a~~~~~----e~~~~~   90 (299)
T KOG3081|consen   21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLA-----LGQYQIVISEIKEGK-ATPLQAVRLLAEYLEL----ESNKKS   90 (299)
T ss_pred             hhHHHHHHHHHHhhccccchhHHHHHHHHHHHH-----ccccccccccccccc-CChHHHHHHHHHHhhC----cchhHH
Confidence            57777777776665443 455555556666652     122211111111111 1112233334443333    333333


Q ss_pred             HH-HHHHHHHHc---CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877          375 AC-KYFLVAANA---GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRM  450 (672)
Q Consensus       375 A~-~~~~~A~~~---~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  450 (672)
                      -+ +.++..+..   .+......-+.+|.+    .++++.|....++   ..+.++...-..++.+..+.+-|....+++
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~----~~~~deAl~~~~~---~~~lE~~Al~VqI~lk~~r~d~A~~~lk~m  163 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMH----DGDFDEALKALHL---GENLEAAALNVQILLKMHRFDLAEKELKKM  163 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhc----CCChHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 223333222   122334444566666    6888888887776   234455555556667777888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCCHHHHH
Q 005877          451 AELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYYGRGTQRDYERAA  528 (672)
Q Consensus       451 ~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lG~~y~~g~g~~~d~~~A~  528 (672)
                      .+.++......||..+-+.-.+            .+....|.-+|+.-.+.-  .+..++..+.++.    .++++++|.
T Consensus       164 q~ided~tLtQLA~awv~la~g------------gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l----~~~~~eeAe  227 (299)
T KOG3081|consen  164 QQIDEDATLTQLAQAWVKLATG------------GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL----QLGRYEEAE  227 (299)
T ss_pred             HccchHHHHHHHHHHHHHHhcc------------chhhhhHHHHHHHHhcccCCChHHHccHHHHHH----HhcCHHHHH
Confidence            8888887777788777663322            446888999998777643  3666778888888    889999999


Q ss_pred             HHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          529 EAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       529 ~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ..++.|+..  ++|+.+-|+=.+-.+   +-+|-+---++..+.....|+..
T Consensus       228 ~lL~eaL~kd~~dpetL~Nliv~a~~---~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  228 SLLEEALDKDAKDPETLANLIVLALH---LGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHH---hCCChHHHHHHHHHHHhcCCcch
Confidence            999999875  678998888766443   12343444455555555566543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.01  E-value=0.21  Score=58.56  Aligned_cols=175  Identities=14%  Similarity=-0.000  Sum_probs=131.3

Q ss_pred             cCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcC
Q 005877          333 KKNYTKAKEYFEKAADN----------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-QKAFYQLAKMFHTG  401 (672)
Q Consensus       333 ~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-~~a~~~L~~~y~~g  401 (672)
                      ..+.++|.+.+++|+..          +.-.|+.||-.+|-       .-+.-.+.|++|.+.-+ -..+..|..+|.. 
T Consensus      1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-------~eesl~kVFeRAcqycd~~~V~~~L~~iy~k- 1542 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-------TEESLKKVFERACQYCDAYTVHLKLLGIYEK- 1542 (1710)
T ss_pred             hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-------cHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-
Confidence            45889999999999864          23345666666553       34566778889888765 4667788888887 


Q ss_pred             CCccCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCcc
Q 005877          402 VGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG----YEVAQSNAAWILDKYGEGSMC  475 (672)
Q Consensus       402 ~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g----~~~a~~nla~~l~~~~~~~~~  475 (672)
                         ...+++|.++|+..++.-  ....+..++..+....+-+.|...+.+|++--    +.....-.|.+-.+       
T Consensus      1543 ---~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk------- 1612 (1710)
T KOG1070|consen 1543 ---SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK------- 1612 (1710)
T ss_pred             ---hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-------
Confidence               788899999999988765  35567788888888888889999999997642    44444445666555       


Q ss_pred             cCCCCCCCchHhHHHHHHHHHH--HHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 005877          476 MGESGFCTDAERHQCAHSLWWQ--ASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS  538 (672)
Q Consensus       476 ~~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~  538 (672)
                               .++.+++..+|+-  +..|.-.|.|.-+-++-.    ..++.+.+...|++++..+
T Consensus      1613 ---------~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei----k~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1613 ---------YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI----KHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             ---------cCCchhhHHHHHHHHhhCccchhHHHHHHHHHH----ccCCHHHHHHHHHHHHhcC
Confidence                     5567888888884  556667888888888777    7899999999999998763

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.99  E-value=0.0097  Score=50.58  Aligned_cols=98  Identities=20%  Similarity=0.057  Sum_probs=65.3

Q ss_pred             cCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhH
Q 005877          141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA  218 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  218 (672)
                      .++.+.|++.|.+++.  +.++.++.+-+..+.-+++.++|+.-++++++.....            .+-.-.+..+.|.
T Consensus        56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~------------trtacqa~vQRg~  123 (175)
T KOG4555|consen   56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ------------TRTACQAFVQRGL  123 (175)
T ss_pred             ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc------------chHHHHHHHHHHH
Confidence            5677788888888776  5777888888888888888888888888877753210            1111123345666


Q ss_pred             hhhccCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 005877          219 LRKSRGEDDEAFQILEYQAQKGNAGAMYKIGL  250 (672)
Q Consensus       219 ~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~  250 (672)
                      +|..+|+.++|-.-|+.++..|.+-+...|-.
T Consensus       124 lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~  155 (175)
T KOG4555|consen  124 LYRLLGNDDAARADFEAAAQLGSKFAREQLVE  155 (175)
T ss_pred             HHHHhCchHHHHHhHHHHHHhCCHHHHHHHHh
Confidence            77777777777777777777776666555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.94  E-value=0.0025  Score=49.61  Aligned_cols=60  Identities=22%  Similarity=0.211  Sum_probs=53.0

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          511 GDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       511 G~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ..+|.    ..+|+++|+++++++++  ++++..++.+|.+|..    .|++++|++.++++++.+|+..
T Consensus         2 ~~~~~----~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    2 KQIYL----QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ----LGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHH----hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH----hccHHHHHHHHHHHHHHCCCcH
Confidence            45677    78999999999999977  4788999999999988    8999999999999999999754

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.88  E-value=0.0024  Score=49.70  Aligned_cols=57  Identities=12%  Similarity=0.042  Sum_probs=49.3

Q ss_pred             HHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877          131 GFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV  191 (672)
Q Consensus       131 g~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~  191 (672)
                      ..+|..    .+++++|+.++++++.  ++++..+...|.++...|++++|+..++++++..|
T Consensus         2 ~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQ----QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHh----CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            456776    8899999999999876  68889999999999999999999999999988654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.85  E-value=0.0036  Score=47.90  Aligned_cols=60  Identities=20%  Similarity=0.089  Sum_probs=50.4

Q ss_pred             hhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHH
Q 005877          105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAY  168 (672)
Q Consensus       105 ~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~  168 (672)
                      .|++++|+..|+++  ..|+++++.+.+|.+|..    .+++++|...++++..  ++++..+..++.
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK----QGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH----TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            58999999999994  567999999999999999    9999999999999887  455666666554

...

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.79  E-value=0.0025  Score=41.15  Aligned_cols=33  Identities=42%  Similarity=0.575  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          540 AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       540 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      +.+++++|.+|..    .+++++|+.+|++|++++|+
T Consensus         1 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQ----LGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHH----hCCchHHHHHHHHHHHHCcC
Confidence            4567888888876    78888888888888888775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.72  E-value=0.27  Score=51.39  Aligned_cols=145  Identities=14%  Similarity=0.059  Sum_probs=100.5

Q ss_pred             hhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHH---hCC-C-------HHHHHHHHHHHhc
Q 005877          106 RVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAA---EGG-N-------IQSKMAVAYTYLR  172 (672)
Q Consensus       106 ~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~---~~~-~-------~~a~~~Lg~~y~~  172 (672)
                      .+...+....+...  ..+.+.+.+.-+..+..    .+|+.+|.+.+...-   ++| .       -....+||.++++
T Consensus       220 ~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~----~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~  295 (696)
T KOG2471|consen  220 RNLKLAKREVKHVMNIAQDSSMALLLKSQLEYA----HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ  295 (696)
T ss_pred             HHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHH----hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee
Confidence            44555555554432  33667788777877776    889999999887642   233 1       1344789999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHhhhhcc-CCCCccc-chhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHH
Q 005877          173 QDMHDKAVKLYAELAEIAVNSFLIS-KDSPVIE-PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKI  248 (672)
Q Consensus       173 ~~~~~~A~~~y~~a~~~~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~L  248 (672)
                      .+.|.-++.+|.+++.........+ .+.+... ..--.-++.+|.|..+...|++-.|.++|.++...  .+|..++.|
T Consensus       296 ~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRl  375 (696)
T KOG2471|consen  296 LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRL  375 (696)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            9999999999999997333222221 1111111 01112356778999999999999999999999887  599999999


Q ss_pred             HHHHHh
Q 005877          249 GLFYYF  254 (672)
Q Consensus       249 g~~y~~  254 (672)
                      +.+...
T Consensus       376 AEcCim  381 (696)
T KOG2471|consen  376 AECCIM  381 (696)
T ss_pred             HHHHHH
Confidence            988753

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.70  E-value=0.0034  Score=40.43  Aligned_cols=33  Identities=33%  Similarity=0.490  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          540 AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       540 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      |.+++.+|.+|..    .|++++|+++|++|++++|+
T Consensus         1 a~~~~~lg~~~~~----~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQ----LGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCcC
Confidence            4567777877776    77888888888888877775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.59  E-value=0.47  Score=45.94  Aligned_cols=155  Identities=21%  Similarity=0.280  Sum_probs=88.8

Q ss_pred             cCCHHHHHHHHHHHHh--CC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhh
Q 005877          141 ERNKGKAFLYHHFAAE--GG---NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEEN  215 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~--~~---~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  215 (672)
                      .+++++|+.+|+....  ++   -..+++.++..+.+.++++.|+...++-+...|.                       
T Consensus        47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-----------------------  103 (254)
T COG4105          47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-----------------------  103 (254)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-----------------------
Confidence            4455555555555443  22   2477888888888889999998888887665432                       


Q ss_pred             hhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHH---HHHHHHHHc--CCHHHHHHHHHHHH
Q 005877          216 KGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKAL---MWFSKAADK--GEPQSMEFLGEIYA  290 (672)
Q Consensus       216 ~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~---~~~~~a~~~--~~~~a~~~Lg~~y~  290 (672)
                                            .++-.-+++..|.+++.+...+.+|..-+.   .-|+..+..  +...+         
T Consensus       104 ----------------------~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya---------  152 (254)
T COG4105         104 ----------------------HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA---------  152 (254)
T ss_pred             ----------------------CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch---------
Confidence                                  123345677778888888766667765544   444444442  22211         


Q ss_pred             cCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHc
Q 005877          291 RGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----EEAGGHYNLGVMYYK  364 (672)
Q Consensus       291 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~  364 (672)
                            .|-++=+.+++..+    +.--..+|..|..     .+.+.-|+..++..++.     ...+++..+...|..
T Consensus       153 ------~dA~~~i~~~~d~L----A~~Em~IaryY~k-----r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~  216 (254)
T COG4105         153 ------PDAKARIVKLNDAL----AGHEMAIARYYLK-----RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA  216 (254)
T ss_pred             ------hhHHHHHHHHHHHH----HHHHHHHHHHHHH-----hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence                  12222222222221    1122346666764     45777777777777765     234566666666666

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.52  E-value=0.59  Score=44.65  Aligned_cols=42  Identities=19%  Similarity=0.242  Sum_probs=30.1

Q ss_pred             CCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 005877          520 TQRDYERAAEAYMHARSQ------SNAQAMFNLGYMHEHGQGLPLDLHLAKRY  566 (672)
Q Consensus       520 ~~~d~~~A~~~~~~A~~~------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  566 (672)
                      ...||..|..+|+.....      .+..++-+|=..|.     .+|.++....
T Consensus       202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-----~gD~E~~~kv  249 (308)
T KOG1585|consen  202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-----EGDIEEIKKV  249 (308)
T ss_pred             hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-----cCCHHHHHHH
Confidence            457999999999996542      35667777777776     5677776543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.45  E-value=0.13  Score=55.86  Aligned_cols=152  Identities=16%  Similarity=0.161  Sum_probs=104.6

Q ss_pred             CCCcCCHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 005877          293 AGVERNYTKALEWLTHAARQQLYSA--------YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMY  362 (672)
Q Consensus       293 ~g~~~~~~~A~~~~~~a~~~~~~~a--------~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y  362 (672)
                      .|..+|-+.+++.+.++.+.++..+        .+.++.....+......+.+.|.+.+....+.  +.+--.+.-|.++
T Consensus       198 vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~  277 (468)
T PF10300_consen  198 VGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLE  277 (468)
T ss_pred             cCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3447888888888888877543221        12223333333200234777888888877663  4555567778888


Q ss_pred             HcCCCchhcHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh-H--HHHHHHH
Q 005877          363 YKGIGVKRDVKLACKYFLVAANAG------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS-S--LSRWALE  433 (672)
Q Consensus       363 ~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~-a--~~~lg~~  433 (672)
                      ..    .++.++|++.|+++....      +....+.++.++..    ..++++|..++.+..+.++|. +  .+..|..
T Consensus       278 ~~----~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  278 RL----KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC  349 (468)
T ss_pred             HH----hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            88    889999999999876522      34567788888876    899999999999999988774 2  4456777


Q ss_pred             HHhcCCH-------HHHHHHHHHHHH
Q 005877          434 SYLKGDV-------GKAFLLYSRMAE  452 (672)
Q Consensus       434 ~~~~g~~-------~~A~~~~~~a~~  452 (672)
                      +...|+.       ++|..++.++-.
T Consensus       350 ~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHhhccchhhhhhHHHHHHHHHHHHH
Confidence            8888888       777777776643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.43  E-value=0.33  Score=46.30  Aligned_cols=56  Identities=20%  Similarity=0.105  Sum_probs=31.7

Q ss_pred             HHHHHhhcCCcccCCHHHHHHHHHHHHhC-CCHHHHHHH-------HHHHhccCCHHHHHHHHHHHHH
Q 005877          129 VLGFLYGMGMMRERNKGKAFLYHHFAAEG-GNIQSKMAV-------AYTYLRQDMHDKAVKLYAELAE  188 (672)
Q Consensus       129 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~~~a~~~L-------g~~y~~~~~~~~A~~~y~~a~~  188 (672)
                      .-+..|..    .+++++|..++.+|++. .+..+++.-       +.+......+.++..+|+++..
T Consensus        36 kAAvafRn----Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~   99 (308)
T KOG1585|consen   36 KAAVAFRN----AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE   99 (308)
T ss_pred             HHHHHHHh----hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33445666    77888888888888852 333333333       3333334555556666665543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.39  E-value=1.1  Score=52.96  Aligned_cols=201  Identities=14%  Similarity=0.084  Sum_probs=115.6

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHH
Q 005877          157 GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ  236 (672)
Q Consensus       157 ~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~a  236 (672)
                      |+..-.++..-..+++..+.++|.+..++++....  +            |  +                  -      .
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN--~------------R--E------------------e------e 1494 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTIN--F------------R--E------------------E------E 1494 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCC--c------------c--h------------------h------H
Confidence            55555555555566678899999999998876210  0            0  0                  0      0


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C
Q 005877          237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP-QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--Q  313 (672)
Q Consensus       237 a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~-~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~  313 (672)
                      -..+---|+++|=..|        +.-+.-.+.|++|.+-.++ ..+..|..+|..    ...+++|.++|+..++.  .
T Consensus      1495 EKLNiWiA~lNlEn~y--------G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k----~ek~~~A~ell~~m~KKF~q 1562 (1710)
T KOG1070|consen 1495 EKLNIWIAYLNLENAY--------GTEESLKKVFERACQYCDAYTVHLKLLGIYEK----SEKNDEADELLRLMLKKFGQ 1562 (1710)
T ss_pred             HHHHHHHHHHhHHHhh--------CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHH----hhcchhHHHHHHHHHHHhcc
Confidence            0001223444444444        2445555667777665554 356666777766    66667777777776654  2


Q ss_pred             CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--C
Q 005877          314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--H  387 (672)
Q Consensus       314 ~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~  387 (672)
                      ....+..++...+.     +.+-+.|...+++|++-    .+.+.....+++-++    .||.+.+...|+-.+...  .
T Consensus      1563 ~~~vW~~y~~fLl~-----~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk----~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLR-----QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK----YGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred             hhhHHHHHHHHHhc-----ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh----cCCchhhHHHHHHHHhhCccc
Confidence            45556666666654     32345566666766653    355555556666666    667777777776655433  3


Q ss_pred             HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877          388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG  422 (672)
Q Consensus       388 ~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~  422 (672)
                      .+.|.-...+-..    .++.+.+..+|+++++.+
T Consensus      1634 tDlW~VYid~eik----~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1634 TDLWSVYIDMEIK----HGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             hhHHHHHHHHHHc----cCCHHHHHHHHHHHHhcC
Confidence            3444444444443    567777777777777665

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.39  E-value=0.081  Score=46.56  Aligned_cols=95  Identities=16%  Similarity=0.124  Sum_probs=70.4

Q ss_pred             CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh-
Q 005877          351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW-  424 (672)
Q Consensus       351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-  424 (672)
                      .+..++.-|.-.++    .+++++|++.|+.....-     ...+...|+..|..    .+++++|+..+++-++..|. 
T Consensus         9 ~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~a~~~rFirLhP~h   80 (142)
T PF13512_consen    9 SPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAIAAYDRFIRLHPTH   80 (142)
T ss_pred             CHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC
Confidence            45666777777777    788888888888876532     35788888888887    88899999999888888753 


Q ss_pred             ----hHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHc
Q 005877          425 ----SSLSRWALESYLKGD---------------VGKAFLLYSRMAEL  453 (672)
Q Consensus       425 ----~a~~~lg~~~~~~g~---------------~~~A~~~~~~a~~~  453 (672)
                          -+++..|..++...+               ..+|+..|++.++.
T Consensus        81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence                367778888777654               55666666666553

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.34  E-value=0.29  Score=44.68  Aligned_cols=62  Identities=15%  Similarity=0.023  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877          124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG---GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEI  189 (672)
Q Consensus       124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~---~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~  189 (672)
                      ....+.||.....    .|++.+|...|++++..   +++..++.++......+++..|...++++.+.
T Consensus        89 vqnr~rLa~al~e----lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~  153 (251)
T COG4700          89 VQNRYRLANALAE----LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY  153 (251)
T ss_pred             HHHHHHHHHHHHH----hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Confidence            4456788888877    88999999999999884   78888888999999999999998888887653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.20  E-value=0.3  Score=53.19  Aligned_cols=163  Identities=20%  Similarity=0.180  Sum_probs=97.8

Q ss_pred             CchhcHHHHHHHHHHHHHcCCH---H-----HHHHHHHHHHcCC-CccCCHHHHHHHHHHHHHcCChhH--HHHHHHHHH
Q 005877          367 GVKRDVKLACKYFLVAANAGHQ---K-----AFYQLAKMFHTGV-GLKKNLHMATALYKLVAERGPWSS--LSRWALESY  435 (672)
Q Consensus       367 g~~~~~~~A~~~~~~A~~~~~~---~-----a~~~L~~~y~~g~-g~~~~~~~A~~~~~~a~~~~~~~a--~~~lg~~~~  435 (672)
                      |-.+|.+.+++.+.++.+.++.   .     ..|++.....-++ +...+.+.|...++...++-|..+  ++..|..+.
T Consensus       199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~  278 (468)
T PF10300_consen  199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER  278 (468)
T ss_pred             CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            3356777777777776664432   1     1222333233222 146788888888888888777665  445677888


Q ss_pred             hcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005877          436 LKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYY  515 (672)
Q Consensus       436 ~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~  515 (672)
                      ..|+.++|+..|+++++.....-+.                                          ..-..+.+||++.
T Consensus       279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql------------------------------------------~~l~~~El~w~~~  316 (468)
T PF10300_consen  279 LKGNLEEAIESFERAIESQSEWKQL------------------------------------------HHLCYFELAWCHM  316 (468)
T ss_pred             HhcCHHHHHHHHHHhccchhhHHhH------------------------------------------HHHHHHHHHHHHH
Confidence            8899999999999887432111111                                          1123456777777


Q ss_pred             hCCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHc-CCC--CCCCHHHHHHHHHHHHhcCC
Q 005877          516 YGRGTQRDYERAAEAYMHARSQSN---AQAMFNLGYMHEH-GQG--LPLDLHLAKRYYDQALEVDP  575 (672)
Q Consensus       516 ~g~g~~~d~~~A~~~~~~A~~~~~---~~a~~~Lg~~y~~-g~g--~~~d~~~A~~~~~~A~~~~~  575 (672)
                          ...|+++|.+++.+-.+.++   +...|-.|.++.. |..  .....++|.++++++-.+-.
T Consensus       317 ----~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  317 ----FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             ----HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence                77888888888887776532   3344555666543 100  11222777788877766543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.17  E-value=0.012  Score=40.59  Aligned_cols=41  Identities=20%  Similarity=0.019  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHH
Q 005877          124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAY  168 (672)
Q Consensus       124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~  168 (672)
                      |++++.+|..|..    .|++++|+.+|+++++  ++|+.++..||.
T Consensus         1 p~~~~~la~~~~~----~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRR----LGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4567788888887    7888888888888776  678888777764

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.07  E-value=1.3  Score=42.91  Aligned_cols=170  Identities=18%  Similarity=0.162  Sum_probs=90.4

Q ss_pred             CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---
Q 005877          241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ---  312 (672)
Q Consensus       241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---  312 (672)
                      .+.-+++-|..-++.     +|+++|++.|++....     -...++..++..+..    .++++.|+...++-+..   
T Consensus        33 p~~~LY~~g~~~L~~-----gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk----~~~y~~A~~~~drFi~lyP~  103 (254)
T COG4105          33 PASELYNEGLTELQK-----GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK----NGEYDLALAYIDRFIRLYPT  103 (254)
T ss_pred             CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCC
Confidence            455566666666666     3777777777766543     125677777777776    67777777777777653   


Q ss_pred             --CCHHHHHHHHHHHHcCCCCCcCCHHHH---HHHHHHHHhC--C---CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH
Q 005877          313 --QLYSAYNGIGYLYVKGYGVEKKNYTKA---KEYFEKAADN--E---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA  382 (672)
Q Consensus       313 --~~~~a~~~Lg~~y~~g~g~~~~~~~~A---~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A  382 (672)
                        +-..+++..|..+..+......|..-+   +.-|+..++.  +   -+++...+-                  ++...
T Consensus       104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~------------------~~~d~  165 (254)
T COG4105         104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV------------------KLNDA  165 (254)
T ss_pred             CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH------------------HHHHH
Confidence              234466667777766544333344333   3333333332  1   111111111                  11110


Q ss_pred             HHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCCHHHHHH
Q 005877          383 ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFL  445 (672)
Q Consensus       383 ~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g~~~~A~~  445 (672)
                      +    ..--..+|..|..    .+.+--|+..++.+++.-+     .+++..+...|+..|-.++|..
T Consensus       166 L----A~~Em~IaryY~k----r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~  225 (254)
T COG4105         166 L----AGHEMAIARYYLK----RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK  225 (254)
T ss_pred             H----HHHHHHHHHHHHH----hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH
Confidence            0    1111234555555    5666666666666665531     3456666666666666665544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.02  E-value=0.013  Score=40.50  Aligned_cols=40  Identities=20%  Similarity=0.146  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHH
Q 005877          505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGY  548 (672)
Q Consensus       505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~  548 (672)
                      .+++.+|..|.    ..|++++|+++|+++++  ++++.++..||.
T Consensus         2 ~~~~~la~~~~----~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYR----RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            56778888888    78888888888888876  478888877764

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.01  E-value=0.2  Score=44.06  Aligned_cols=109  Identities=21%  Similarity=0.118  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CH
Q 005877          387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAELG-----YE  456 (672)
Q Consensus       387 ~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g-----~~  456 (672)
                      .+..++.-|.-...    .+++++|++.++....+-|     ..+...++.+|+..+++++|+..+++-+++.     -+
T Consensus         9 ~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd   84 (142)
T PF13512_consen    9 SPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD   84 (142)
T ss_pred             CHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence            56667777777776    8999999999999988875     4578999999999999999999999998875     23


Q ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh
Q 005877          457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE  500 (672)
Q Consensus       457 ~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  500 (672)
                      -+++..|.+......+.+..-. +...++....+|+..|++.+.
T Consensus        85 Ya~Y~~gL~~~~~~~~~~~~~~-~~drD~~~~~~A~~~f~~lv~  127 (142)
T PF13512_consen   85 YAYYMRGLSYYEQDEGSLQSFF-RSDRDPTPARQAFRDFEQLVR  127 (142)
T ss_pred             HHHHHHHHHHHHHhhhHHhhhc-ccccCcHHHHHHHHHHHHHHH
Confidence            4455555544432211110000 233344455555555555443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.98  E-value=0.62  Score=42.65  Aligned_cols=117  Identities=19%  Similarity=0.045  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC-
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAEL---GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-  502 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~---g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-  502 (672)
                      .+.||....+.|++.+|...|++++.-   +++..+..+|.....                .++...|...+++.-+-. 
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa----------------~~~~A~a~~tLe~l~e~~p  155 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA----------------IQEFAAAQQTLEDLMEYNP  155 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh----------------hccHHHHHHHHHHHhhcCC
Confidence            344555555555555555555555332   233333333333322                334445555555433322 


Q ss_pred             ---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 005877          503 ---NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYY  567 (672)
Q Consensus       503 ---~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  567 (672)
                         .++.+..+|..|.    ..+.+..|..-|+.++.- ..+++-...+.++..    +|...+|..-|
T Consensus       156 a~r~pd~~Ll~aR~la----a~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~----qgr~~ea~aq~  216 (251)
T COG4700         156 AFRSPDGHLLFARTLA----AQGKYADAESAFEVAISYYPGPQARIYYAEMLAK----QGRLREANAQY  216 (251)
T ss_pred             ccCCCCchHHHHHHHH----hcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHH----hcchhHHHHHH
Confidence               3677788888888    788999999999999885 667777777877766    55555555443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.95  E-value=0.012  Score=37.95  Aligned_cols=32  Identities=13%  Similarity=0.259  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877          160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV  191 (672)
Q Consensus       160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~  191 (672)
                      +.+++.+|.+|...+++++|+.+|++++++.|
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            35778888888889999999999998888654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.95  E-value=0.0069  Score=39.11  Aligned_cols=30  Identities=27%  Similarity=0.234  Sum_probs=23.8

Q ss_pred             HHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877          151 HHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV  180 (672)
Q Consensus       151 ~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~  180 (672)
                      |++|++  |+|+.++++||.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            566665  788888888888888888888875

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.80  E-value=0.014  Score=37.44  Aligned_cols=32  Identities=9%  Similarity=0.205  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877          160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV  191 (672)
Q Consensus       160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~  191 (672)
                      +.+++.+|.+|...|++++|+++|++++++.|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            35677888888888888888888888877644

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.74  E-value=0.021  Score=37.38  Aligned_cols=29  Identities=21%  Similarity=0.300  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 005877          162 SKMAVAYTYLRQDMHDKAVKLYAELAEIA  190 (672)
Q Consensus       162 a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~  190 (672)
                      ++..||.+|...|++++|+++|++++...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            46789999999999999999999977543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.67  E-value=0.016  Score=37.22  Aligned_cols=32  Identities=38%  Similarity=0.637  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          541 QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       541 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      .+++.+|.+|..    .||+++|+++|+++++++|+
T Consensus         2 ~~~~~lg~~y~~----~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQ----LGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHH----TTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence            467778888776    77888888888888877763

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.53  E-value=0.014  Score=37.71  Aligned_cols=30  Identities=30%  Similarity=0.211  Sum_probs=16.9

Q ss_pred             HHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHH
Q 005877          531 YMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAK  564 (672)
Q Consensus       531 ~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~  564 (672)
                      |++|++  ++++.++++||.+|..    .||.++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~----~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLN----QGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHH----CcCHHhhc
Confidence            455544  3566666666666654    55555554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.50  E-value=1.9  Score=44.83  Aligned_cols=175  Identities=13%  Similarity=0.054  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC------ChhHHHHHHHHHHh---cCCHHHHHHHHHHHHHcC---CH
Q 005877          389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG------PWSSLSRWALESYL---KGDVGKAFLLYSRMAELG---YE  456 (672)
Q Consensus       389 ~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~---~g~~~~A~~~~~~a~~~g---~~  456 (672)
                      +...++=..|..    -+|++.=+.+.+..-...      .+...+.+|.++.+   .||.++|+..+..++...   .+
T Consensus       142 div~~lllSyRd----iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~  217 (374)
T PF13281_consen  142 DIVINLLLSYRD----IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP  217 (374)
T ss_pred             hHHHHHHHHhhh----hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence            344455556666    778888888877765442      34456778888887   889999999998865543   56


Q ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--
Q 005877          457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-NEHAALLIGDAYYYGRGTQRDYERAAEAYMH--  533 (672)
Q Consensus       457 ~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~--  533 (672)
                      +...-+|.+|......       ....+.+.+++|+.+|+++-+.. +.-+-+|++.++.    ..+.-.+...-.++  
T Consensus       218 d~~gL~GRIyKD~~~~-------s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~----~~g~~~~~~~el~~i~  286 (374)
T PF13281_consen  218 DTLGLLGRIYKDLFLE-------SNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLM----LAGHDFETSEELRKIG  286 (374)
T ss_pred             HHHHHHHHHHHHHHHH-------cCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHH----HcCCcccchHHHHHHH
Confidence            6777788888763211       11234567999999999986665 2334457777666    33322211111111  


Q ss_pred             ------HHhc---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877          534 ------ARSQ---SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       534 ------A~~~---~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  579 (672)
                            ..+.   +....++..|...+-.. ..+|+++|.++++++..+.|....
T Consensus       287 ~~l~~llg~kg~~~~~~dYWd~ATl~Ea~v-L~~d~~ka~~a~e~~~~l~~~~W~  340 (374)
T PF13281_consen  287 VKLSSLLGRKGSLEKMQDYWDVATLLEASV-LAGDYEKAIQAAEKAFKLKPPAWE  340 (374)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcCCcchh
Confidence                  1111   23344455555544322 278999999999999999887653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.38  E-value=2.9  Score=40.58  Aligned_cols=153  Identities=13%  Similarity=0.189  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHH
Q 005877          227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKAL  303 (672)
Q Consensus       227 ~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~  303 (672)
                      +.-++.+++-.    ...++.+..+++-.     +.+.-.+..+.+.++.+   +|.....||.+-..    .||.+.|.
T Consensus       166 ESsv~lW~KRl----~~Vmy~~~~~llG~-----kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~  232 (366)
T KOG2796|consen  166 ESSIRLWRKRL----GRVMYSMANCLLGM-----KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAE  232 (366)
T ss_pred             hhHHHHHHHHH----HHHHHHHHHHHhcc-----hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHH
Confidence            44455555432    34556666666544     58888888999888854   57788889999888    89999999


Q ss_pred             HHHHHHHHc--------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHH
Q 005877          304 EWLTHAARQ--------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVK  373 (672)
Q Consensus       304 ~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~  373 (672)
                      .+|++.-+.        +......+.+.+|.-     .+|+..|...|.+....+  ++.+-++-+.|.+-    .++..
T Consensus       233 ~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-----~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY----lg~l~  303 (366)
T KOG2796|consen  233 KYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-----QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY----LGKLK  303 (366)
T ss_pred             HHHHHHHHHHhhhhccchhHHHHhhhhhheec-----ccchHHHHHHHhhccccCCCchhhhchHHHHHHH----HHHHH
Confidence            999965432        234455566666653     459999999998888775  56666777777776    78999


Q ss_pred             HHHHHHHHHHHcCC-----HHHHHHHHHHHHcC
Q 005877          374 LACKYFLVAANAGH-----QKAFYQLAKMFHTG  401 (672)
Q Consensus       374 ~A~~~~~~A~~~~~-----~~a~~~L~~~y~~g  401 (672)
                      .|++..+.+.+..+     ....++|..||+-.
T Consensus       304 DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~  336 (366)
T KOG2796|consen  304 DALKQLEAMVQQDPRHYLHESVLFNLTTMYELE  336 (366)
T ss_pred             HHHHHHHHHhccCCccchhhhHHHHHHHHHHHH
Confidence            99999999887543     33456688787753

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.21  E-value=0.03  Score=36.67  Aligned_cols=28  Identities=39%  Similarity=0.535  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877          542 AMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV  573 (672)
Q Consensus       542 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  573 (672)
                      ++.+||.+|..    .||+++|+++|++++.+
T Consensus         1 al~~Lg~~~~~----~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQ----QGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHH----CT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            46778888877    78888888888886654

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.01  E-value=0.2  Score=48.05  Aligned_cols=89  Identities=19%  Similarity=0.203  Sum_probs=63.5

Q ss_pred             hHhHHHHHHHHHHHHh-----C-CC---HHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhcC--------CH
Q 005877          485 AERHQCAHSLWWQASE-----Q-GN---EHAALLIGDAYYYGRGTQRD-------YERAAEAYMHARSQS--------NA  540 (672)
Q Consensus       485 ~~~~~~A~~~~~~a~~-----~-~~---~~a~~~lG~~y~~g~g~~~d-------~~~A~~~~~~A~~~~--------~~  540 (672)
                      ...+++|+..|..|+-     . .+   +....+++|+|.    ..+|       +.+|.+.|++|.+..        ..
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR----~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR----DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh----ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            3367788887776521     1 22   445669999999    6666       446666677765532        25


Q ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchh
Q 005877          541 QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPV  581 (672)
Q Consensus       541 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  581 (672)
                      ..+|-+|.++..    .|++++|++||.+.+.....+.-+.
T Consensus       166 ~l~YLigeL~rr----lg~~~eA~~~fs~vi~~~~~s~~~~  202 (214)
T PF09986_consen  166 TLLYLIGELNRR----LGNYDEAKRWFSRVIGSKKASKEPK  202 (214)
T ss_pred             HHHHHHHHHHHH----hCCHHHHHHHHHHHHcCCCCCCcHH
Confidence            778889999887    8999999999999999876655333

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=94.88  E-value=0.29  Score=44.73  Aligned_cols=100  Identities=19%  Similarity=0.178  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcC------CCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCC--
Q 005877          336 YTKAKEYFEKAADN--EEAGGHYNLGVMYYKG------IGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVG--  403 (672)
Q Consensus       336 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g------~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g--  403 (672)
                      ++.|.+.++.....  .+++++++-|..++.-      .....-+++|+.-|+.|+.  ++...+++++|..|..---  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            34566666655443  4677777777666541      0012345566666676655  4567888888888754110  


Q ss_pred             -----ccCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005877          404 -----LKKNLHMATALYKLVAERGPWSSLSRWALESY  435 (672)
Q Consensus       404 -----~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~  435 (672)
                           ....+++|..+|++|.+..|.+..++.+....
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                 12336778888888888888777766655443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.65  E-value=0.043  Score=34.76  Aligned_cols=32  Identities=19%  Similarity=0.271  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          541 QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       541 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      +|++++|.+|..    .|+.++|++.|++.++.-|+
T Consensus         1 ~a~~~~a~~~~~----~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYK----LGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHH----HCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCcC
Confidence            366777777766    67777777777777776665

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.64  E-value=1.7  Score=46.13  Aligned_cols=163  Identities=16%  Similarity=0.045  Sum_probs=105.3

Q ss_pred             HHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC------------
Q 005877           92 TISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG------------  157 (672)
Q Consensus        92 a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~------------  157 (672)
                      +...|..+-+   .+|.++-++.-++|.+  ++.++|+..|+.--..      ...+|.++|+++++.            
T Consensus       171 Aq~IMq~AWR---ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~------Ti~Eae~l~rqAvkAgE~~lg~s~~~~  241 (539)
T PF04184_consen  171 AQEIMQKAWR---ERNPQARIKAAKEALEINPDCADAYILLAEEEAS------TIVEAEELLRQAVKAGEASLGKSQFLQ  241 (539)
T ss_pred             HHHHHHHHHh---cCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc------CHHHHHHHHHHHHHHHHHhhchhhhhh
Confidence            3344444444   4566777777778654  4678999888875443      568888888887531            


Q ss_pred             --CC-------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhc
Q 005877          158 --GN-------------IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKS  222 (672)
Q Consensus       158 --~~-------------~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  222 (672)
                        |.             +-+...||++..+.|..++|++.++.+++..+...              +-++.+++-..+..
T Consensus       242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~--------------~l~IrenLie~LLe  307 (539)
T PF04184_consen  242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD--------------NLNIRENLIEALLE  307 (539)
T ss_pred             cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc--------------hhhHHHHHHHHHHh
Confidence              11             23456789999999999999999999987543211              22455678888889


Q ss_pred             cCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcC-----------CCcccCHHHHHHHHHHHHHcC
Q 005877          223 RGEDDEAFQILEYQAQK---GNAGAMYKIGLFYYFGL-----------RGLRRDRTKALMWFSKAADKG  277 (672)
Q Consensus       223 ~g~~~~Ai~~~~~aa~~---~~~~a~~~Lg~~y~~~~-----------~~~~~~~~~A~~~~~~a~~~~  277 (672)
                      .+.|.++...+.+--+.   ..+...|.-+.+-....           +|.......|++...+|++.+
T Consensus       308 lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN  376 (539)
T PF04184_consen  308 LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN  376 (539)
T ss_pred             cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence            99999999888886443   34444554444433221           112222345677788887743

The molecular function of this protein is uncertain.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=94.59  E-value=0.076  Score=33.98  Aligned_cols=31  Identities=10%  Similarity=0.186  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877          161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV  191 (672)
Q Consensus       161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~  191 (672)
                      ++++.+|.+|...|++++|+++|+++++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4678889999999999999999999888764

...

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.48  E-value=0.04  Score=34.93  Aligned_cols=31  Identities=16%  Similarity=0.224  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877          161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV  191 (672)
Q Consensus       161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~  191 (672)
                      ++++.+|.+|...|++++|+..|+++++..|
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            4788899999999999999999999887644

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.48  E-value=2.3  Score=45.14  Aligned_cols=109  Identities=13%  Similarity=0.010  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc---CC
Q 005877          315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA---GH  387 (672)
Q Consensus       315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~  387 (672)
                      +.+...|+++...     .|..++|++.|+..++.    ++-..+++|-.+++.    .+.+.++...+.+=-+.   ..
T Consensus       259 ~y~KrRLAmCark-----lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe----lq~Yad~q~lL~kYdDi~lpkS  329 (539)
T PF04184_consen  259 VYAKRRLAMCARK-----LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE----LQAYADVQALLAKYDDISLPKS  329 (539)
T ss_pred             hhhHHHHHHHHHH-----hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh----cCCHHHHHHHHHHhccccCCch
Confidence            3455678888775     57889999999998864    345688888888888    88888888777774322   22


Q ss_pred             HHHHHHHHHHHHcCCC------------ccCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005877          388 QKAFYQLAKMFHTGVG------------LKKNLHMATALYKLVAERGPWSSLSRWAL  432 (672)
Q Consensus       388 ~~a~~~L~~~y~~g~g------------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~  432 (672)
                      +...|.-+.+-....+            ..-.-..|++...+|++.+|-..-+-|+.
T Consensus       330 Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~  386 (539)
T PF04184_consen  330 ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM  386 (539)
T ss_pred             HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence            3333444443332221            11223457888999998887555444443

The molecular function of this protein is uncertain.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.43  E-value=6.2  Score=39.75  Aligned_cols=116  Identities=19%  Similarity=0.152  Sum_probs=58.6

Q ss_pred             cCCHHHHHHHHHHHHhCC---C-------HHHHHHHHHHHHcCCCchh-cHHHHHHHHHHHHHc----CC----------
Q 005877          333 KKNYTKAKEYFEKAADNE---E-------AGGHYNLGVMYYKGIGVKR-DVKLACKYFLVAANA----GH----------  387 (672)
Q Consensus       333 ~~~~~~A~~~~~~a~~~~---~-------~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~A~~~----~~----------  387 (672)
                      +||.+.|..++.|+-...   +       +..+|++|.-...    .+ +++.|+.|+++|.+.    +.          
T Consensus         6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~----~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS----KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            346666666666654321   2       2334455554444    45 677777777766542    10          


Q ss_pred             --HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHH-hcCCHHHHHHHHHHHHHc
Q 005877          388 --QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-PWSSLSRWALESY-LKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       388 --~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~  453 (672)
                        ......|+..|.. ++.....++|..+.+.+-... +....+.+..... ..++.+.+.+.+.+++..
T Consensus        82 lr~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   82 LRLSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence              1234455555543 233445556666666553332 3233333333322 246677777777666544

It is also involved in sporulation [].

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.21  E-value=8.9  Score=40.62  Aligned_cols=406  Identities=13%  Similarity=0.015  Sum_probs=222.7

Q ss_pred             HHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhhhhccCC
Q 005877          126 ARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG-----NIQSKMAVAYTYLR-QDMHDKAVKLYAELAEIAVNSFLISKD  199 (672)
Q Consensus       126 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~-~~~~~~A~~~y~~a~~~~~~~~~~~~~  199 (672)
                      +...++..+..  ..+.+..+++++.+-.....     .+.....||.+.+. .+|.+-|...++++-.+...       
T Consensus         9 aLlGlAe~~rt--~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~-------   79 (629)
T KOG2300|consen    9 ALLGLAEHFRT--SGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS-------   79 (629)
T ss_pred             HHHHHHHHHhh--cCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc-------
Confidence            33444444444  12447888888887655422     23556677877654 78999999999998765421       


Q ss_pred             CCcccchhcccCchhhhhHhhhccC-ChHHHHHHHHHHHHc--CC----HHHHHHHHHHHHhcCCCcccCHHHHHHHHHH
Q 005877          200 SPVIEPIRIHNGAEENKGALRKSRG-EDDEAFQILEYQAQK--GN----AGAMYKIGLFYYFGLRGLRRDRTKALMWFSK  272 (672)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~Ai~~~~~aa~~--~~----~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~  272 (672)
                      -|..  .+...++..-++.++.... .+..+-..++++++.  +.    -...+.|++++.-.     +|+.-|++.+.-
T Consensus        80 ip~f--ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~id-----kD~~sA~elLav  152 (629)
T KOG2300|consen   80 IPSF--YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIID-----KDFPSALELLAV  152 (629)
T ss_pred             cccH--HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhh-----ccchhHHHHHhc
Confidence            1111  1333344445666666555 778888889988766  33    35677788887544     799999998654


Q ss_pred             HHHcCCH------HHHHHH--HHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH-------HHHHHHHHHHcCCCCCcCC
Q 005877          273 AADKGEP------QSMEFL--GEIYARGAGVERNYTKALEWLTHAARQ--QLYS-------AYNGIGYLYVKGYGVEKKN  335 (672)
Q Consensus       273 a~~~~~~------~a~~~L--g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~-------a~~~Lg~~y~~g~g~~~~~  335 (672)
                      ....-++      ...+.+  +.+..... ...|.+++..--.+..+.  +++.       -+..+-..|..-.|-.+ .
T Consensus       153 ga~sAd~~~~~ylr~~ftls~~~ll~me~-d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~r-t  230 (629)
T KOG2300|consen  153 GAESADHICFPYLRMLFTLSMLMLLIMER-DDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVR-T  230 (629)
T ss_pred             cccccchhhhHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchh-h
Confidence            4332221      111111  11222200 123333444333333332  2222       12334444543222222 3


Q ss_pred             HHHHHHHHHHHHhCCCH---------------HHHHH------HHHHHHcCC---CchhcHHHHHHHHHHHHHc------
Q 005877          336 YTKAKEYFEKAADNEEA---------------GGHYN------LGVMYYKGI---GVKRDVKLACKYFLVAANA------  385 (672)
Q Consensus       336 ~~~A~~~~~~a~~~~~~---------------~a~~~------Lg~~y~~g~---g~~~~~~~A~~~~~~A~~~------  385 (672)
                      ...+++-+++.+....+               .-..+      -+.+|..-.   -+.|=++++.++-.+++..      
T Consensus       231 ~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq  310 (629)
T KOG2300|consen  231 VKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQ  310 (629)
T ss_pred             hHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhccc
Confidence            44555555555543111               11100      111222100   1356677777777776542      


Q ss_pred             -C-CHHHHHHHHHHHHcCC----CccCCHHHHHHHHHHHHHcC---C---------hhHHHHHHHHHHhcCCHHHHHHHH
Q 005877          386 -G-HQKAFYQLAKMFHTGV----GLKKNLHMATALYKLVAERG---P---------WSSLSRWALESYLKGDVGKAFLLY  447 (672)
Q Consensus       386 -~-~~~a~~~L~~~y~~g~----g~~~~~~~A~~~~~~a~~~~---~---------~~a~~~lg~~~~~~g~~~~A~~~~  447 (672)
                       . .......+-.+..+-+    -+.+++.+|++-...+.+..   |         +....-+|.....-+-++.|...|
T Consensus       311 ~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf  390 (629)
T KOG2300|consen  311 ADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHF  390 (629)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHH
Confidence             1 1222222221111111    14789999998887776543   2         122444566666677888898888


Q ss_pred             HHHHHcC-----CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC----------HHHHHHHHH
Q 005877          448 SRMAELG-----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN----------EHAALLIGD  512 (672)
Q Consensus       448 ~~a~~~g-----~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----------~~a~~~lG~  512 (672)
                      ..|.+.-     ...+..|+|.+|-+.+.             ..++-++++.    +.+.+          +.+.|-.|.
T Consensus       391 ~~a~k~t~~~dl~a~~nlnlAi~YL~~~~-------------~ed~y~~ld~----i~p~nt~s~ssq~l~a~~~~v~gl  453 (629)
T KOG2300|consen  391 IEATKLTESIDLQAFCNLNLAISYLRIGD-------------AEDLYKALDL----IGPLNTNSLSSQRLEASILYVYGL  453 (629)
T ss_pred             HHHHHhhhHHHHHHHHHHhHHHHHHHhcc-------------HHHHHHHHHh----cCCCCCCcchHHHHHHHHHHHHHH
Confidence            8886553     23456788988876222             3333333332    22221          345566677


Q ss_pred             HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH--------HHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877          513 AYYYGRGTQRDYERAAEAYMHARSQSNAQAM--------FNLGYMHEHGQGLPLDLHLAKRYYDQALEVD  574 (672)
Q Consensus       513 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~--------~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  574 (672)
                      .-+    .++++.+|...+++.++..|++-.        .-||.+..    +.||-.++..-.+-++.+.
T Consensus       454 faf----~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~l----slgn~~es~nmvrpamqlA  515 (629)
T KOG2300|consen  454 FAF----KQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFL----SLGNTVESRNMVRPAMQLA  515 (629)
T ss_pred             HHH----HhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH----HhcchHHHHhccchHHHHH
Confidence            667    789999999999999887655444        44454443    3788888888888887764

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.19  E-value=0.47  Score=43.87  Aligned_cols=103  Identities=20%  Similarity=0.154  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHH
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHA  506 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a  506 (672)
                      +-.-|.-++..|+|++|..-|..|++.-.+...---+.+|                                        
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly----------------------------------------  137 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILY----------------------------------------  137 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHH----------------------------------------
Confidence            3345677888999999999999988864332221111111                                        


Q ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          507 ALLIGDAYYYGRGTQRDYERAAEAYMHARSQS--NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       507 ~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                       .+-|.+..    ..+..+.|+.--.+|++.+  .-.|+..-+..|++    .-.++.|++-|++.++.+|...
T Consensus       138 -~Nraaa~i----Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek----~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  138 -SNRAAALI----KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK----MEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             -hhhHHHHH----HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHhCcchH
Confidence             23344555    5667777888888887763  46677777888887    6778888888888888888754

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=94.07  E-value=0.32  Score=44.45  Aligned_cols=84  Identities=14%  Similarity=0.099  Sum_probs=55.9

Q ss_pred             HHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCC-------HHHHHHHHHHHHh--CCCHHHHHHHHHHHhcc---
Q 005877          108 MEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERN-------KGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQ---  173 (672)
Q Consensus       108 ~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d-------~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~---  173 (672)
                      |+.|.+.++.  ..+|.+++++++-|..+.. +..-+.       +++|+.=|++|+.  |+..+++..+|..|...   
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLE-LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLE-LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            5788888888  5677889999988877654 211222       3455555666544  78899999999999873   


Q ss_pred             --------CCHHHHHHHHHHHHHHHHh
Q 005877          174 --------DMHDKAVKLYAELAEIAVN  192 (672)
Q Consensus       174 --------~~~~~A~~~y~~a~~~~~~  192 (672)
                              ..+++|..+|+++.+..|.
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~  112 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPN  112 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence                    2367777777777776654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.01  E-value=0.81  Score=42.33  Aligned_cols=95  Identities=17%  Similarity=0.036  Sum_probs=68.6

Q ss_pred             HHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-C----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh-HHHH
Q 005877          356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAG-H----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS-SLSR  429 (672)
Q Consensus       356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~-a~~~  429 (672)
                      ..++..+..    .+++++|...++.++... +    ..+-.+|+++...    ++.+++|+..+....+.+... ..-.
T Consensus        93 L~lAk~~ve----~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL~~L~t~~~~~w~~~~~el  164 (207)
T COG2976          93 LELAKAEVE----ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAALKTLDTIKEESWAAIVAEL  164 (207)
T ss_pred             HHHHHHHHh----hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhccccccHHHHHHHH
Confidence            345556666    778888888888776432 2    3566788888876    888999988887766554333 2445


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCHHH
Q 005877          430 WALESYLKGDVGKAFLLYSRMAELGYEVA  458 (672)
Q Consensus       430 lg~~~~~~g~~~~A~~~~~~a~~~g~~~a  458 (672)
                      .|.++..+||.++|...|++|++.+...+
T Consensus       165 rGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         165 RGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             hhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            68899999999999999999988864333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.87  E-value=0.81  Score=42.37  Aligned_cols=81  Identities=16%  Similarity=0.049  Sum_probs=39.5

Q ss_pred             hhcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCC
Q 005877          369 KRDVKLACKYFLVAANAGHQ-------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGD  439 (672)
Q Consensus       369 ~~~~~~A~~~~~~A~~~~~~-------~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~  439 (672)
                      .|++.+|..-|..|++.-++       ..+.+-|.+...    .+.++.|+.-+.++++.+|  ..++.+.+.+|.+...
T Consensus       108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek  183 (271)
T KOG4234|consen  108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK  183 (271)
T ss_pred             cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence            55556665555555554322       122233333333    4455555555555555553  2344445555555555


Q ss_pred             HHHHHHHHHHHHHc
Q 005877          440 VGKAFLLYSRMAEL  453 (672)
Q Consensus       440 ~~~A~~~~~~a~~~  453 (672)
                      ++.|+.-|++.++.
T Consensus       184 ~eealeDyKki~E~  197 (271)
T KOG4234|consen  184 YEEALEDYKKILES  197 (271)
T ss_pred             HHHHHHHHHHHHHh
Confidence            55555555555444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.79  E-value=3.9  Score=39.69  Aligned_cols=42  Identities=24%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             CHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCchhcHHHHHHHHH
Q 005877          335 NYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFL  380 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  380 (672)
                      .|.-+++.+.+.++.+   ++.....||.+-++    -||.+-|..+|+
T Consensus       192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~  236 (366)
T KOG2796|consen  192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQ  236 (366)
T ss_pred             hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHH
Confidence            5555555555555433   33344445555555    455555555555

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.75  E-value=10  Score=39.61  Aligned_cols=27  Identities=26%  Similarity=0.198  Sum_probs=20.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      ..++.+....||+++|+.+++++....
T Consensus       309 ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  309 ATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence            344555667889999999999988774

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.69  E-value=1.2  Score=41.30  Aligned_cols=90  Identities=18%  Similarity=0.077  Sum_probs=45.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAELGY-----EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG  502 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~~g~-----~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  502 (672)
                      ..++..+...+++++|...++.++..--     ..+-.+||.++..                .+.+++|+..+..-.+.+
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----------------~~k~D~AL~~L~t~~~~~  156 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----------------QKKADAALKTLDTIKEES  156 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----------------hhhHHHHHHHHhcccccc
Confidence            3445556666777777777766653321     1222234444433                444444444444332322


Q ss_pred             CHH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877          503 NEH-AALLIGDAYYYGRGTQRDYERAAEAYMHARSQ  537 (672)
Q Consensus       503 ~~~-a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~  537 (672)
                      ... ..-.-|+++.    ..+|-++|+.-|++|++.
T Consensus       157 w~~~~~elrGDill----~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         157 WAAIVAELRGDILL----AKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHHHHHHHhhhHHH----HcCchHHHHHHHHHHHHc
Confidence            211 2224566666    666666666666666655

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.67  E-value=1.6  Score=41.73  Aligned_cols=126  Identities=17%  Similarity=0.089  Sum_probs=88.0

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCH
Q 005877          425 SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNE  504 (672)
Q Consensus       425 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  504 (672)
                      .++..-|+.+|..|+|.+|...|..|+--     .-||-  +            ...+.+.       +|.+.  +.-..
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~-----l~~L~--l------------kEkP~e~-------eW~eL--dk~~t  230 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIIC-----LRNLQ--L------------KEKPGEP-------EWLEL--DKMIT  230 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHH-----HHHHH--h------------ccCCCCh-------HHHHH--HHhhh
Confidence            35667788899999999999999888431     11110  0            0000000       11111  11123


Q ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchhH
Q 005877          505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVT  582 (672)
Q Consensus       505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~  582 (672)
                      .-+.|+..|+.    ..++|-+++++-...+..  +|..|+|.-|..+..    ..|..+|..=+.++++++|...-.+.
T Consensus       231 pLllNy~QC~L----~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa----~Wn~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  231 PLLLNYCQCLL----KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAA----VWNEAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             HHHHhHHHHHh----hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhcChhhHHHHH
Confidence            34568899999    889999999998888764  789999999999987    67999999999999999998765555


Q ss_pred             HHHH
Q 005877          583 LALT  586 (672)
Q Consensus       583 ~~~~  586 (672)
                      ..+-
T Consensus       303 rElr  306 (329)
T KOG0545|consen  303 RELR  306 (329)
T ss_pred             HHHH
Confidence            4443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.25  E-value=0.67  Score=44.51  Aligned_cols=49  Identities=14%  Similarity=0.015  Sum_probs=31.5

Q ss_pred             CcccCHHHHHHHHHHHHHc-----C----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 005877          258 GLRRDRTKALMWFSKAADK-----G----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAA  310 (672)
Q Consensus       258 ~~~~~~~~A~~~~~~a~~~-----~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~  310 (672)
                      +-.+++++|++.|..|+-.     .    -+.....++.+|..    .++.+....++++|+
T Consensus        88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~----~~~~~~E~~fl~~Al  145 (214)
T PF09986_consen   88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD----LGDEENEKRFLRKAL  145 (214)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc----cCCHHHHHHHHHHHH
Confidence            3456888899888887642     1    14566777888887    677555444444444

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=93.19  E-value=0.32  Score=48.55  Aligned_cols=93  Identities=19%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHH
Q 005877          319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQL  394 (672)
Q Consensus       319 ~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L  394 (672)
                      -.-|.-|+.     +|.|++|+++|.+++...  ++..+.|-+..|++    .+.+..|..-...|+..+  ...|+.+-
T Consensus       101 KE~GN~yFK-----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR  171 (536)
T KOG4648|consen  101 KERGNTYFK-----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRR  171 (536)
T ss_pred             HHhhhhhhh-----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence            344566664     678899999998887764  77788888888888    888888888888877655  34566666


Q ss_pred             HHHHHcCCCccCCHHHHHHHHHHHHHcCCh
Q 005877          395 AKMFHTGVGLKKNLHMATALYKLVAERGPW  424 (672)
Q Consensus       395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~  424 (672)
                      +..-..    .+...+|..-++.+++..|.
T Consensus       172 ~~AR~~----Lg~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  172 MQARES----LGNNMEAKKDCETVLALEPK  197 (536)
T ss_pred             HHHHHH----HhhHHHHHHhHHHHHhhCcc
Confidence            655555    67777788888888777654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=93.17  E-value=19  Score=41.13  Aligned_cols=85  Identities=13%  Similarity=0.039  Sum_probs=66.1

Q ss_pred             ChhhHHHHHHHHHHHHh--CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHH
Q 005877          104 DVRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKA  179 (672)
Q Consensus       104 ~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A  179 (672)
                      +.+++.+|.+...+...  |+.+.+...-|.....    .+..++|..+++....  +.+...+-.+-.+|...+..++|
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r----~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFR----LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            36889999999999443  4556677777777777    7888899977776544  35677888899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 005877          180 VKLYAELAEIAVN  192 (672)
Q Consensus       180 ~~~y~~a~~~~~~  192 (672)
                      ..+|+++....|+
T Consensus        97 ~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   97 VHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHHhhCCc
Confidence            9999999876543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.12  E-value=16  Score=37.70  Aligned_cols=177  Identities=16%  Similarity=0.038  Sum_probs=87.9

Q ss_pred             hhhHHHHHHHHHHHHhC--CChHHHHHH--HHHhhcCCcccCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHhc---cCCH
Q 005877          105 VRVMEEATSEVESAAME--GDPHARSVL--GFLYGMGMMRERNKGKAFLYHHFAAEGGNIQS-KMAVAYTYLR---QDMH  176 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~--~~~~a~~~L--g~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a-~~~Lg~~y~~---~~~~  176 (672)
                      .||-..|.+.-.++...  .+.+.+..|  +..-.-    .||++.|.+-|+-.++  +++. +..|--+|+.   .|+.
T Consensus        97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~----eG~~~~Ar~kfeAMl~--dPEtRllGLRgLyleAqr~Gar  170 (531)
T COG3898          97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALL----EGDYEDARKKFEAMLD--DPETRLLGLRGLYLEAQRLGAR  170 (531)
T ss_pred             cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHh----cCchHHHHHHHHHHhc--ChHHHHHhHHHHHHHHHhcccH
Confidence            45666666666664422  333333332  222222    6788888877775443  3322 2334344443   6888


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH-----cC---CHHHHHHH
Q 005877          177 DKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ-----KG---NAGAMYKI  248 (672)
Q Consensus       177 ~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~-----~~---~~~a~~~L  248 (672)
                      +.|+.|-+++..+.+.-                .++....-.-....|+.+.|+++.+..-.     ++   -..+.+.-
T Consensus       171 eaAr~yAe~Aa~~Ap~l----------------~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt  234 (531)
T COG3898         171 EAARHYAERAAEKAPQL----------------PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT  234 (531)
T ss_pred             HHHHHHHHHHHhhccCC----------------chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Confidence            88888888877654320                11111222234567788888887776421     11   11222222


Q ss_pred             HHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877          249 GLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR  311 (672)
Q Consensus       249 g~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  311 (672)
                      +.....    +..|...|...-..+.+.  +...+-..-+..+..    .++..|+-+.++.+=+
T Consensus       235 AkA~s~----ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~----d~~~rKg~~ilE~aWK  291 (531)
T COG3898         235 AKAMSL----LDADPASARDDALEANKLAPDLVPAAVVAARALFR----DGNLRKGSKILETAWK  291 (531)
T ss_pred             HHHHHH----hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh----ccchhhhhhHHHHHHh
Confidence            222111    112555555555555543  334444455555555    5666666666655544

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=91.79  E-value=1.5  Score=41.90  Aligned_cols=87  Identities=14%  Similarity=0.020  Sum_probs=71.6

Q ss_pred             CCchHhHHHHHHHHHHHHhCCCHH-HH-HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCC
Q 005877          482 CTDAERHQCAHSLWWQASEQGNEH-AA-LLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLP  557 (672)
Q Consensus       482 ~~~~~~~~~A~~~~~~a~~~~~~~-a~-~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~  557 (672)
                      +...+++..|+..|.+++-..+.. ++ -+-+.+|+    +.++++....--++|++.  +...+.|.||.....    .
T Consensus        20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl----k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~----s   91 (284)
T KOG4642|consen   20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL----KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ----S   91 (284)
T ss_pred             ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH----HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh----h
Confidence            444778999999999998877644 33 38999999    889999999999999885  678899999988766    7


Q ss_pred             CCHHHHHHHHHHHHhcCCC
Q 005877          558 LDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       558 ~d~~~A~~~~~~A~~~~~~  576 (672)
                      +.++.|+..+.+|..+...
T Consensus        92 ~~~~eaI~~Lqra~sl~r~  110 (284)
T KOG4642|consen   92 KGYDEAIKVLQRAYSLLRE  110 (284)
T ss_pred             ccccHHHHHHHHHHHHHhc
Confidence            8899999999999766433

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.68  E-value=10  Score=34.61  Aligned_cols=131  Identities=23%  Similarity=0.247  Sum_probs=84.0

Q ss_pred             cCCHHHHHHHHHHHHhCC---C-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhh
Q 005877          141 ERNKGKAFLYHHFAAEGG---N-IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENK  216 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~~~---~-~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  216 (672)
                      .+..++|+.-|....+.|   . .-+++..|.+..+.|+...|+.+|.++....+          .+...|  +-+...-
T Consensus        71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~----------~P~~~r--d~ARlra  138 (221)
T COG4649          71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS----------IPQIGR--DLARLRA  138 (221)
T ss_pred             cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC----------Ccchhh--HHHHHHH
Confidence            345566666666555532   2 36778888888888888888888888765321          111110  1111123


Q ss_pred             hHhhhccCChHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 005877          217 GALRKSRGEDDEAFQILEYQAQKGNA---GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEI  288 (672)
Q Consensus       217 ~~~~~~~g~~~~Ai~~~~~aa~~~~~---~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~  288 (672)
                      +.+....|.|++.....+..+-.+++   .+.-.||..-+..     +|+.+|..||.+.++. +.|....+-+.+
T Consensus       139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka-----gd~a~A~~~F~qia~Da~aprnirqRAq~  209 (221)
T COG4649         139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA-----GDFAKAKSWFVQIANDAQAPRNIRQRAQI  209 (221)
T ss_pred             HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc-----cchHHHHHHHHHHHccccCcHHHHHHHHH
Confidence            55566788888888888887777654   5677788877777     4999999999998764 344444444433

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=91.55  E-value=0.48  Score=47.35  Aligned_cols=91  Identities=14%  Similarity=0.037  Sum_probs=76.2

Q ss_pred             HHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--ChhHHHHHH
Q 005877          356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWA  431 (672)
Q Consensus       356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg  431 (672)
                      -.-|.-|++    +|.|++|+.+|.+++..  .++....|-+..|..    .+.+..|..-+..|+..+  ...+|.+.+
T Consensus       101 KE~GN~yFK----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~  172 (536)
T KOG4648|consen  101 KERGNTYFK----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRRM  172 (536)
T ss_pred             HHhhhhhhh----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence            345778888    89999999999998764  367777788888887    788888888888887776  467899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcC
Q 005877          432 LESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       432 ~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      .+....|+..+|-+-++.+++..
T Consensus       173 ~AR~~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  173 QARESLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             HHHHHHhhHHHHHHhHHHHHhhC
Confidence            99999999999999999997765

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.09  E-value=12  Score=34.15  Aligned_cols=114  Identities=18%  Similarity=0.194  Sum_probs=63.3

Q ss_pred             ccCChHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC-CH-----HHHHHHHHHHHc
Q 005877          222 SRGEDDEAFQILEYQAQKG----NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-EP-----QSMEFLGEIYAR  291 (672)
Q Consensus       222 ~~g~~~~Ai~~~~~aa~~~----~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-~~-----~a~~~Lg~~y~~  291 (672)
                      +.+..++|+.-|....+.|    ..-+.+..|.+..+.     ++...|+..|..+.+.. .|     .+...-+.++.+
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~k-----gdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD  144 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQK-----GDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD  144 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc-----ccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence            3445566666666665554    234566666666655     47777777777765531 22     233344444444


Q ss_pred             CCCCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877          292 GAGVERNYTKALEWLTHAARQQL---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN  349 (672)
Q Consensus       292 g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~  349 (672)
                          .+.|+.-..-.+...-.++   ..+...||..-..     .|++.+|.++|.+.+..
T Consensus       145 ----~gsy~dV~srvepLa~d~n~mR~sArEALglAa~k-----agd~a~A~~~F~qia~D  196 (221)
T COG4649         145 ----NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYK-----AGDFAKAKSWFVQIAND  196 (221)
T ss_pred             ----cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHh-----ccchHHHHHHHHHHHcc
Confidence                5556555554444433333   2345566665543     45777777777766553

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=90.71  E-value=0.53  Score=46.36  Aligned_cols=79  Identities=18%  Similarity=0.044  Sum_probs=58.9

Q ss_pred             cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCH
Q 005877           85 INGSYYITISKMMSAVTNGDVRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNI  160 (672)
Q Consensus        85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~  160 (672)
                      ..+....++..+..+......|+.++|..+|+-  +..+.+++++...|..-..    .++.-+|-.||.+|..  ++|.
T Consensus       109 ~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~----~~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  109 DPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM----HNEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             CchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh----hhhhHhhhhhhheeeeeCCCch
Confidence            344555666666666666667888899999988  4567889999888888777    6788888888888764  7888


Q ss_pred             HHHHHHH
Q 005877          161 QSKMAVA  167 (672)
Q Consensus       161 ~a~~~Lg  167 (672)
                      +|+.+-+
T Consensus       185 eALvnR~  191 (472)
T KOG3824|consen  185 EALVNRA  191 (472)
T ss_pred             HHHhhhh
Confidence            8776544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.57  E-value=0.58  Score=31.25  Aligned_cols=32  Identities=25%  Similarity=0.251  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877          161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN  192 (672)
Q Consensus       161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~  192 (672)
                      .++.+||.+|...|++++|+.+++++++....
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            57788999999999999999999999886543

>smart00028 TPR Tetratricopeptide repeats

Probab=90.35  E-value=0.39  Score=29.23  Aligned_cols=30  Identities=43%  Similarity=0.649  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877          542 AMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP  575 (672)
Q Consensus       542 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  575 (672)
                      +++++|.+|..    .++++.|..+|+++++.+|
T Consensus         3 ~~~~~a~~~~~----~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLK----LGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHH----HhhHHHHHHHHHHHHccCC
Confidence            44555665554    5566666666666665544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.41  E-value=0.65  Score=30.99  Aligned_cols=28  Identities=32%  Similarity=0.300  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005877          505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARS  536 (672)
Q Consensus       505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~  536 (672)
                      .++.+||.+|.    ..+++++|..+++++++
T Consensus         3 ~~~~~la~~~~----~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYR----AQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHH----HCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----hhhhcchhhHHHHHHHH
Confidence            34556666666    55666666666666543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=89.15  E-value=2.6  Score=37.65  Aligned_cols=66  Identities=11%  Similarity=-0.035  Sum_probs=52.4

Q ss_pred             HHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhh
Q 005877          126 ARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL  195 (672)
Q Consensus       126 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~  195 (672)
                      +...++..+..    .+++++|+.++++++.  +-+..++..|-.+|...|+...|+..|++..+.-.....
T Consensus        64 ~~~~l~~~~~~----~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg  131 (146)
T PF03704_consen   64 ALERLAEALLE----AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG  131 (146)
T ss_dssp             HHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence            44556666666    8899999999999876  788999999999999999999999999998876554443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=89.04  E-value=10  Score=38.18  Aligned_cols=110  Identities=18%  Similarity=0.212  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHhCC--CHHHHHHHHHH-HHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHH
Q 005877          336 YTKAKEYFEKAADNE--EAGGHYNLGVM-YYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM  410 (672)
Q Consensus       336 ~~~A~~~~~~a~~~~--~~~a~~~Lg~~-y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~  410 (672)
                      .+.|...|++|.+.+  ....+...|.+ |..    .+|.+.|.+.|+.+++.  .+...+......+..    .+|.+.
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~----~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~----~~d~~~   88 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYC----NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK----LNDINN   88 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT----CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----TT-HHH
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hCcHHH
Confidence            445555555554332  23444444444 222    23444455555555542  222222222223332    445555


Q ss_pred             HHHHHHHHHHcCChh-----HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          411 ATALYKLVAERGPWS-----SLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       411 A~~~~~~a~~~~~~~-----a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      |..+|++++..-+..     .+......-..-|+.+.....++++.+.
T Consensus        89 aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   89 ARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            555555555443221     1222222233446666666666666544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=88.84  E-value=11  Score=37.90  Aligned_cols=128  Identities=15%  Similarity=0.109  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHH
Q 005877          281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHY  356 (672)
Q Consensus       281 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~  356 (672)
                      ++..+.....+    .+..+.|...|++|.+.+  ....+...+.+...    ..+|.+.|...|+++++.  .+.+.+.
T Consensus         3 v~i~~m~~~~r----~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~----~~~d~~~A~~Ife~glk~f~~~~~~~~   74 (280)
T PF05843_consen    3 VWIQYMRFMRR----TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY----CNKDPKRARKIFERGLKKFPSDPDFWL   74 (280)
T ss_dssp             HHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH----TCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHH----hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            44555566666    778899999999998764  35566677777443    234777799999999886  5677777


Q ss_pred             HHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-H----HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh
Q 005877          357 NLGVMYYKGIGVKRDVKLACKYFLVAANAGH-Q----KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW  424 (672)
Q Consensus       357 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-~----~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~  424 (672)
                      .....+..    .+|.+.|...|++++..-. .    ..+......-..    -||.+.....++++.+.-+.
T Consensus        75 ~Y~~~l~~----~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~----~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   75 EYLDFLIK----LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK----YGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHHHHHHH----TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHH----hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhh
Confidence            77777777    7899999999999976422 1    223222222222    56888888888888776544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=88.50  E-value=11  Score=33.56  Aligned_cols=60  Identities=17%  Similarity=0.189  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005877          388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMA  451 (672)
Q Consensus       388 ~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~  451 (672)
                      ..+...++..+..    .+++++|+.++++++...|.  .++..+-.++...|++.+|+..|++..
T Consensus        62 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   62 LDALERLAEALLE----AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            4556677777776    89999999999999999864  467788889999999999999999874

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.85  E-value=3.3  Score=38.85  Aligned_cols=70  Identities=17%  Similarity=0.101  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHH---cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC------ChhHHHHHHHHHHhcCCHHH
Q 005877          372 VKLACKYFLVAAN---AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG------PWSSLSRWALESYLKGDVGK  442 (672)
Q Consensus       372 ~~~A~~~~~~A~~---~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~g~~~~  442 (672)
                      -+.|..-|.++-.   ...++.++.||..|.     ..|.+||+.++-++++..      +++.+..|+.+++..|++++
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-----krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-----KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence            3566666666543   347888888888887     588899999998888765      35678888899999999988


Q ss_pred             HHHH
Q 005877          443 AFLL  446 (672)
Q Consensus       443 A~~~  446 (672)
                      |-.|
T Consensus       197 AYiw  200 (203)
T PF11207_consen  197 AYIW  200 (203)
T ss_pred             hhhh
Confidence            8654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=87.71  E-value=11  Score=37.65  Aligned_cols=81  Identities=16%  Similarity=0.089  Sum_probs=53.0

Q ss_pred             hhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHH----------------------HH------
Q 005877          105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHH----------------------FA------  154 (672)
Q Consensus       105 ~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~----------------------~A------  154 (672)
                      .+++.+|...|..+  ..+.+.++...|+.+|..    .++.+.|...+.                      ++      
T Consensus       147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~----~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~  222 (304)
T COG3118         147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA----AGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI  222 (304)
T ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH----cCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence            57777888888774  344667777888887776    455544333333                      22      


Q ss_pred             --------HhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877          155 --------AEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEI  189 (672)
Q Consensus       155 --------~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~  189 (672)
                              .++++.++.+.||..+...|+++.|++.+-.+++.
T Consensus       223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                    23567777777777777777777777776666554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.70  E-value=4.5  Score=37.96  Aligned_cols=71  Identities=24%  Similarity=0.402  Sum_probs=43.5

Q ss_pred             ChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCC
Q 005877          225 EDDEAFQILEYQAQK---GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK------GEPQSMEFLGEIYARGAGV  295 (672)
Q Consensus       225 ~~~~Ai~~~~~aa~~---~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~  295 (672)
                      ..++|...|.++...   .+++.++.||..|...      |.++|+..|-++++.      -++..+..|+.+|..    
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr------D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~----  190 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYTKR------DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK----  190 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc------CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----
Confidence            445566666555433   3667777777766543      677777777776653      246666666666666    


Q ss_pred             cCCHHHHHHH
Q 005877          296 ERNYTKALEW  305 (672)
Q Consensus       296 ~~~~~~A~~~  305 (672)
                      .+++++|--|
T Consensus       191 ~~~~e~AYiw  200 (203)
T PF11207_consen  191 LKNYEQAYIW  200 (203)
T ss_pred             hcchhhhhhh
Confidence            6666666443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=87.54  E-value=57  Score=37.07  Aligned_cols=131  Identities=15%  Similarity=0.123  Sum_probs=81.0

Q ss_pred             cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCC----C----hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh
Q 005877           85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEG----D----PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE  156 (672)
Q Consensus        85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~----~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~  156 (672)
                      +...+.+|..++..      ..|++.|..+++++....    .    -.+.+.|+.+|..    . +...|.....++++
T Consensus        59 a~~~l~la~iL~~e------T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~----~-~~~~a~~~l~~~I~  127 (608)
T PF10345_consen   59 ARVRLRLASILLEE------TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK----T-NPKAALKNLDKAIE  127 (608)
T ss_pred             HHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh----c-CHHHHHHHHHHHHH
Confidence            44566777777754      578999999999964331    1    3466788888875    3 44449999999886


Q ss_pred             C--C--C--HHHHHHHH--HHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHH
Q 005877          157 G--G--N--IQSKMAVA--YTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDE  228 (672)
Q Consensus       157 ~--~--~--~~a~~~Lg--~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~  228 (672)
                      .  +  +  ....+.+-  ..+...+|+..|+..++.+.......     ..+...   +  -.....+.+....+..++
T Consensus       128 ~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-----~d~~~~---v--~~~l~~~~l~l~~~~~~d  197 (608)
T PF10345_consen  128 DSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-----GDPAVF---V--LASLSEALLHLRRGSPDD  197 (608)
T ss_pred             HHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-----CCHHHH---H--HHHHHHHHHHhcCCCchh
Confidence            2  2  2  22333332  22323479999999999988754210     111110   0  011124556677788888


Q ss_pred             HHHHHHHH
Q 005877          229 AFQILEYQ  236 (672)
Q Consensus       229 Ai~~~~~a  236 (672)
                      +++.++.+
T Consensus       198 ~~~~l~~~  205 (608)
T PF10345_consen  198 VLELLQRA  205 (608)
T ss_pred             HHHHHHHH
Confidence            88888876

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.42  E-value=44  Score=35.68  Aligned_cols=370  Identities=17%  Similarity=0.110  Sum_probs=213.3

Q ss_pred             chHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC----CC-----hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-
Q 005877           87 GSYYITISKMMSAVTNGDVRVMEEATSEVESAAME----GD-----PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-  156 (672)
Q Consensus        87 a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~----~~-----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-  156 (672)
                      ....+|...+..      .+|++.|...++++-..    ++     -.+...|+.+|..   ..+....|....++|++ 
T Consensus        48 t~LqLg~lL~~y------T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~---~~~s~~~~KalLrkaiel  118 (629)
T KOG2300|consen   48 THLQLGALLLRY------TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQ---LAQSFPPAKALLRKAIEL  118 (629)
T ss_pred             HHHHHHHHHHHH------hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHH---hcCCCchHHHHHHHHHHH
Confidence            345566665544      58899999999996432    22     3567788998876   13377788888999987 


Q ss_pred             -CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHH
Q 005877          157 -GGNI----QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQ  231 (672)
Q Consensus       157 -~~~~----~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~  231 (672)
                       .+.|    .-.+.|+.++...+|+..|++.+.-    +..    ..++.-...+++...  ...+.+.....+..+...
T Consensus       119 sq~~p~wsckllfQLaql~~idkD~~sA~elLav----ga~----sAd~~~~~ylr~~ft--ls~~~ll~me~d~~dV~~  188 (629)
T KOG2300|consen  119 SQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAV----GAE----SADHICFPYLRMLFT--LSMLMLLIMERDDYDVEK  188 (629)
T ss_pred             hcCCchhhHHHHHHHHHHHhhhccchhHHHHHhc----ccc----ccchhhhHHHHHHHH--HHHHHHHHhCccHHHHHH
Confidence             4554    5678899999999999999887321    110    001111111111100  012222223334444444


Q ss_pred             HHHH---HHHc--CCH-------HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC---------------HHHHH-
Q 005877          232 ILEY---QAQK--GNA-------GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE---------------PQSME-  283 (672)
Q Consensus       232 ~~~~---aa~~--~~~-------~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~---------------~~a~~-  283 (672)
                      .+..   ..+.  +|+       .-++.+-..|+.. .|..+-...+++-+++.+..+.               +.-.. 
T Consensus       189 ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~-~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~w  267 (629)
T KOG2300|consen  189 LLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLL-PGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEW  267 (629)
T ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhc-ccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhh
Confidence            3333   3322  222       2344455555544 3444555566666666654211               10000 


Q ss_pred             -----HHHHHHHcCC---CCcCCHHHHHHHHHHHHHc-------C-CHHHHH--------HHHHHHHcCCCCCcCCHHHH
Q 005877          284 -----FLGEIYARGA---GVERNYTKALEWLTHAARQ-------Q-LYSAYN--------GIGYLYVKGYGVEKKNYTKA  339 (672)
Q Consensus       284 -----~Lg~~y~~g~---g~~~~~~~A~~~~~~a~~~-------~-~~~a~~--------~Lg~~y~~g~g~~~~~~~~A  339 (672)
                           .-+.+|..-.   -+.|-+++|.++-.+++.+       + ......        .+..+-.     ..+++.+|
T Consensus       268 lpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~l-----v~~~~~~a  342 (629)
T KOG2300|consen  268 LPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRL-----VRGDYVEA  342 (629)
T ss_pred             ccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH-----HhCCHHHH
Confidence                 0111221110   1356778888887777743       1 222222        2222222     24688888


Q ss_pred             HHHHHHHHhC------------CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHcCC
Q 005877          340 KEYFEKAADN------------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-----QKAFYQLAKMFHTGV  402 (672)
Q Consensus       340 ~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~L~~~y~~g~  402 (672)
                      ++-...+.+-            ..+..++-+|.....    -+-++.|...|..|.+.-+     ..+..++|..|..  
T Consensus       343 l~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~s----v~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~--  416 (629)
T KOG2300|consen  343 LEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHS----VNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR--  416 (629)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhh----cchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH--
Confidence            8766655431            345667778876666    7789999999999987543     3455688888986  


Q ss_pred             CccCCHHHHHHHHHHHHHcCCh------------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005877          403 GLKKNLHMATALYKLVAERGPW------------SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYG  470 (672)
Q Consensus       403 g~~~~~~~A~~~~~~a~~~~~~------------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~  470 (672)
                        .++   +..+|+-.-..+++            ..++-.|...+.++++.+|...+.+.+++.+.+..+.+-       
T Consensus       417 --~~~---~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~-------  484 (629)
T KOG2300|consen  417 --IGD---AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLT-------  484 (629)
T ss_pred             --hcc---HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHH-------
Confidence              333   33444433333332            235556777778889999999888888877665554432       


Q ss_pred             CCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005877          471 EGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS  536 (672)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~  536 (672)
                                                       +-.+.-||.+..    +.+|-.++.+..+-++.
T Consensus       485 ---------------------------------a~~LvLLs~v~l----slgn~~es~nmvrpamq  513 (629)
T KOG2300|consen  485 ---------------------------------ACSLVLLSHVFL----SLGNTVESRNMVRPAMQ  513 (629)
T ss_pred             ---------------------------------HHHHHHHHHHHH----HhcchHHHHhccchHHH
Confidence                                             224467888888    78888888887776654

>smart00028 TPR Tetratricopeptide repeats

Probab=87.34  E-value=0.53  Score=28.60  Aligned_cols=29  Identities=21%  Similarity=0.390  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005877          161 QSKMAVAYTYLRQDMHDKAVKLYAELAEI  189 (672)
Q Consensus       161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~  189 (672)
                      .+++.+|.++...+++++|+.+|+++++.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            45677888888888888888888887664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=86.56  E-value=38  Score=34.06  Aligned_cols=133  Identities=14%  Similarity=0.005  Sum_probs=68.8

Q ss_pred             cCCHHHHHHHHHHHHh---CCCHH-------HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcc
Q 005877          141 ERNKGKAFLYHHFAAE---GGNIQ-------SKMAVAYTYLRQD-MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIH  209 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~---~~~~~-------a~~~Lg~~y~~~~-~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~  209 (672)
                      ++|.+.|..++.|+-.   ..++.       -+++.|.-....+ +++.|+.|++++.+.-.........++....+   
T Consensus         6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el---   82 (278)
T PF08631_consen    6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL---   82 (278)
T ss_pred             hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH---
Confidence            4566666666666543   22332       3344555555667 89999999999877532100000000000000   


Q ss_pred             cCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 005877          210 NGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEI  288 (672)
Q Consensus       210 ~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~  288 (672)
                                                     ....+..|+..|+..  +.+...++|....+.+-.. ++....+.|..-
T Consensus        83 -------------------------------r~~iL~~La~~~l~~--~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~  129 (278)
T PF08631_consen   83 -------------------------------RLSILRLLANAYLEW--DTYESVEKALNALRLLESEYGNKPEVFLLKLE  129 (278)
T ss_pred             -------------------------------HHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence                                           234566677777766  3334566666666665332 443344434333


Q ss_pred             HHcCCCCcCCHHHHHHHHHHHHHc
Q 005877          289 YARGAGVERNYTKALEWLTHAARQ  312 (672)
Q Consensus       289 y~~g~g~~~~~~~A~~~~~~a~~~  312 (672)
                      ...+   ..+.+.+.+.+.+.+..
T Consensus       130 il~~---~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen  130 ILLK---SFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHhc---cCChhHHHHHHHHHHHh
Confidence            3332   45666666666666543

It is also involved in sporulation [].

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=85.68  E-value=2.9  Score=40.02  Aligned_cols=82  Identities=9%  Similarity=-0.073  Sum_probs=71.7

Q ss_pred             hhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877          105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV  180 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~  180 (672)
                      ++.|..|+..|.+++  .|..+..+.+-+.+|..    .++.+....-.++|.+  ++.+.+++.||...+....++.||
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI   98 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI   98 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence            678899999999954  45667888899999998    8899999999999987  466899999999999999999999


Q ss_pred             HHHHHHHHHH
Q 005877          181 KLYAELAEIA  190 (672)
Q Consensus       181 ~~y~~a~~~~  190 (672)
                      ..++++.+..
T Consensus        99 ~~Lqra~sl~  108 (284)
T KOG4642|consen   99 KVLQRAYSLL  108 (284)
T ss_pred             HHHHHHHHHH
Confidence            9999997754

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=85.52  E-value=48  Score=34.30  Aligned_cols=62  Identities=11%  Similarity=0.024  Sum_probs=36.6

Q ss_pred             CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877          241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG------EPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR  311 (672)
Q Consensus       241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  311 (672)
                      ....+..++.+....     +.++.|...+.++...+      .+...+.-+.+...    .++..+|+..++..++
T Consensus       145 ~~~~~l~~a~~aRk~-----g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~----~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKA-----GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA----QGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHC-----CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence            445555556655555     36666666666665543      45555656666655    6666666666666554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.05  E-value=16  Score=39.34  Aligned_cols=84  Identities=13%  Similarity=0.176  Sum_probs=58.8

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHH
Q 005877          157 GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ  236 (672)
Q Consensus       157 ~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~a  236 (672)
                      .+++.-+-.||...+.+|+.+-|.++|+++-+.                        ..+..+|...|+.++-.+..+.+
T Consensus       344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~------------------------~~L~lLy~~~g~~~~L~kl~~~a  399 (443)
T PF04053_consen  344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF------------------------SGLLLLYSSTGDREKLSKLAKIA  399 (443)
T ss_dssp             CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H------------------------HHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc------------------------cccHHHHHHhCCHHHHHHHHHHH
Confidence            467778888999999999999999999886442                        23667788888877777777777


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHH
Q 005877          237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSK  272 (672)
Q Consensus       237 a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~  272 (672)
                      ...|+....+.-+.+.        +|.++-++.+.+
T Consensus       400 ~~~~~~n~af~~~~~l--------gd~~~cv~lL~~  427 (443)
T PF04053_consen  400 EERGDINIAFQAALLL--------GDVEECVDLLIE  427 (443)
T ss_dssp             HHTT-HHHHHHHHHHH--------T-HHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHc--------CCHHHHHHHHHH
Confidence            7777776666555443        477777777765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=84.49  E-value=6.7  Score=34.10  Aligned_cols=71  Identities=15%  Similarity=0.218  Sum_probs=58.2

Q ss_pred             CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      .....++++|++..-. ...|..+.+.+++..++.    ..-+.+|.|+.-|..    .|+|+++++|.+..++..|++.
T Consensus        31 s~~s~f~lAwaLV~S~-~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR----lkeY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSR-DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR----LKEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             hHHHHHHHHHHHHccc-chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH----HhhHHHHHHHHHHHHhhCCCcH
Confidence            4677899999998322 356788999999998863    345778999998887    8999999999999999998864

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=84.46  E-value=2  Score=30.84  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          541 QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       541 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      +.+|.|+..+.+    .||+.+|+++.+.++++.|+..
T Consensus         2 d~lY~lAig~yk----l~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    2 DCLYYLAIGHYK----LGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHHHH----TT-HHHHHHHHHHHHHHTTS-H
T ss_pred             hhHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCcH
Confidence            457888888887    8999999999999999999965

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=84.43  E-value=10  Score=35.16  Aligned_cols=93  Identities=14%  Similarity=0.088  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHH---c-
Q 005877          351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE---R-  421 (672)
Q Consensus       351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~---~-  421 (672)
                      .-.++..+|..|.+    .||.++|++.|.++.+..     ..+...++-.+...    .+|+.....+..++-.   . 
T Consensus        35 ir~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ka~~~~~~~  106 (177)
T PF10602_consen   35 IRMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIEKAESLIEKG  106 (177)
T ss_pred             HHHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhcc
Confidence            34667788888888    888888888888876632     12344444444444    5778777777777633   2 


Q ss_pred             CChhHHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 005877          422 GPWSSLS----RWALESYLKGDVGKAFLLYSRMA  451 (672)
Q Consensus       422 ~~~~a~~----~lg~~~~~~g~~~~A~~~~~~a~  451 (672)
                      ++|....    .-|..+...++|.+|...|-.+.
T Consensus       107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence            3455433    34566677889999988887763

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=84.32  E-value=2.2  Score=40.57  Aligned_cols=55  Identities=33%  Similarity=0.413  Sum_probs=48.8

Q ss_pred             CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          520 TQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       520 ~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ..+|.+-|.+.|.+|++.  .....++.+|.+.++    .++++.|.+-|++.++++|+..
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek----ag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK----AGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh----cccHHHHHHHHHHHHcCCcccc
Confidence            578999999999999886  678889999999887    8999999999999999998865

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=82.86  E-value=17  Score=36.20  Aligned_cols=55  Identities=24%  Similarity=0.404  Sum_probs=49.1

Q ss_pred             CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          520 TQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       520 ~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ..|+.++|...|+-|+.  +.+++++...|...++    .+|.-+|-++|-+|+..+|...
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~----~~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM----HNEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh----hhhhHhhhhhhheeeeeCCCch
Confidence            56899999999999976  4899999999999887    6899999999999999988754

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.57  E-value=78  Score=34.39  Aligned_cols=228  Identities=14%  Similarity=0.039  Sum_probs=128.9

Q ss_pred             CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCH
Q 005877          313 QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ  388 (672)
Q Consensus       313 ~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~  388 (672)
                      |-....+.-+.+-.      .|+.+.|+..++.+++..    ..-..+.+|.++..    ..++..|...+....+..++
T Consensus       266 ga~wll~~ar~l~~------~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~----~~~~~~aad~~~~L~desdW  335 (546)
T KOG3783|consen  266 GALWLLMEARILSI------KGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVG----QHQYSRAADSFDLLRDESDW  335 (546)
T ss_pred             CccHHHHHHHHHHH------cccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHhhhhh
Confidence            44444554444444      346888999999888721    23455677777776    78999999999887765433


Q ss_pred             ---HHHHHHHHHHHcCC----CccCCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHhcCCHHHHHHHHHHHH-Hc
Q 005877          389 ---KAFYQLAKMFHTGV----GLKKNLHMATALYKLVAER-------GPWSSLSRWALESYLKGDVGKAFLLYSRMA-EL  453 (672)
Q Consensus       389 ---~a~~~L~~~y~~g~----g~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~-~~  453 (672)
                         .-.|..|-++...+    +..++-++|..+.+..-+.       .|.+.+.           ..|+..+-.+.- ..
T Consensus       336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~-----------~RKverf~~~~~~~~  404 (546)
T KOG3783|consen  336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI-----------VRKVERFVKRGPLNA  404 (546)
T ss_pred             hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH-----------HHHHHHHhccccccc
Confidence               33334445554332    2345666666666554322       1222211           112222221110 01


Q ss_pred             CCHHH--HHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHH-HHHh-CCCHH-HHHHHHHHHHhCCCCCCCHHHHH
Q 005877          454 GYEVA--QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW-QASE-QGNEH-AALLIGDAYYYGRGTQRDYERAA  528 (672)
Q Consensus       454 g~~~a--~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~a~~-~~~~~-a~~~lG~~y~~g~g~~~d~~~A~  528 (672)
                      ....+  ...+++++.-+         +...  .++..+...-++ ...+ +++.- -.+-+|.++.    ..+|...|.
T Consensus       405 ~~~la~P~~El~Y~Wngf---------~~~s--~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR----~Lg~~~~a~  469 (546)
T KOG3783|consen  405 SILLASPYYELAYFWNGF---------SRMS--KNELEKMRAELENPKIDDSDDEGLKYLLKGVILR----NLGDSEVAP  469 (546)
T ss_pred             cccccchHHHHHHHHhhc---------ccCC--hhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHH----HcCCHHHHH
Confidence            11222  24555555321         1111  223333333333 2232 22211 2347899998    778999999


Q ss_pred             HHHHHHHhc-----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877          529 EAYMHARSQ-----S----NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       529 ~~~~~A~~~-----~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  579 (672)
                      .+|+..++.     .    -|-|+|.||..|-.-   .+-..++..|.++|-+-..+-.+
T Consensus       470 ~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~---~g~~~e~~~~L~kAr~~~~dY~l  526 (546)
T KOG3783|consen  470 KCFKIQVEKESKRTEDLWAVPFALYELALLYWDL---GGGLKEARALLLKAREYASDYEL  526 (546)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHhc---ccChHHHHHHHHHHHhhccccch
Confidence            999998853     1    389999999998652   23599999999999998765443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=82.53  E-value=7.7  Score=33.78  Aligned_cols=71  Identities=18%  Similarity=0.204  Sum_probs=54.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 005877          455 YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN----EHAALLIGDAYYYGRGTQRDYERAAEA  530 (672)
Q Consensus       455 ~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~  530 (672)
                      ....++|+||.+-+             +.+..+.++.+.+++...+..+    -+-.|.|+.-++    ..++|+++++|
T Consensus        31 s~~s~f~lAwaLV~-------------S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y----RlkeY~~s~~y   93 (149)
T KOG3364|consen   31 SKQSQFNLAWALVR-------------SRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY----RLKEYSKSLRY   93 (149)
T ss_pred             hHHHHHHHHHHHHc-------------ccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH----HHhhHHHHHHH
Confidence            44668899999976             4447789999999997765333    445678888888    88999999999


Q ss_pred             HHHHHhc--CCHHH
Q 005877          531 YMHARSQ--SNAQA  542 (672)
Q Consensus       531 ~~~A~~~--~~~~a  542 (672)
                      ...-++.  +|.++
T Consensus        94 vd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   94 VDALLETEPNNRQA  107 (149)
T ss_pred             HHHHHhhCCCcHHH
Confidence            8887663  55555

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=81.30  E-value=6.4  Score=39.65  Aligned_cols=77  Identities=17%  Similarity=0.056  Sum_probs=36.3

Q ss_pred             CHHHHHHHHHHHHhCC------CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccC
Q 005877          335 NYTKAKEYFEKAADNE------EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKK  406 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~  406 (672)
                      +|..|+..|.+.+...      ++..+.|-+-+...    .++|..+++-..+|....  +..++++-+.++..    .+
T Consensus        96 ryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e----Le  167 (390)
T KOG0551|consen   96 RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE----LE  167 (390)
T ss_pred             hHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH----HH
Confidence            5555555555554431      22333444444444    455555555555554422  44455555555444    44


Q ss_pred             CHHHHHHHHHHHH
Q 005877          407 NLHMATALYKLVA  419 (672)
Q Consensus       407 ~~~~A~~~~~~a~  419 (672)
                      .++.|+.|++..+
T Consensus       168 ~~~~a~nw~ee~~  180 (390)
T KOG0551|consen  168 RFAEAVNWCEEGL  180 (390)
T ss_pred             HHHHHHHHHhhhh
Confidence            4455555554443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=81.17  E-value=1.1e+02  Score=35.30  Aligned_cols=114  Identities=18%  Similarity=0.130  Sum_probs=74.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005877          173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGL  250 (672)
Q Consensus       173 ~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~  250 (672)
                      .+++.+|+.-..++++..|+..                -+..-.+.+..++|..++|..+++.....  .|....-.+-.
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~----------------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~   85 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNAL----------------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQN   85 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcH----------------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHH
Confidence            4677777777777777544321                12224677788999999999888876544  36666666777


Q ss_pred             HHHhcCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 005877          251 FYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGAGVERNYTKALEWLT  307 (672)
Q Consensus       251 ~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  307 (672)
                      +|.+.     +..++|...|++++.. +.-+-.+.+-..|.+-..-......|++.|+
T Consensus        86 ~y~d~-----~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK  138 (932)
T KOG2053|consen   86 VYRDL-----GKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK  138 (932)
T ss_pred             HHHHH-----hhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766     4899999999999875 2355555555666651111222334566666

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.09  E-value=7.7  Score=26.61  Aligned_cols=32  Identities=25%  Similarity=0.136  Sum_probs=24.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHH
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAELGYEVAQ  459 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~  459 (672)
                      +.++..|...||.+.|...+++.++.|+...+
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~   34 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEGDEAQR   34 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcCCHHHH
Confidence            46777788888888888888888877665544

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	672
2xm6_A	490	Crystal Structure Of The Protein Corresponding To L		6e-27
1ouv_A	273	Helicobacter Cysteine Rich Protein C (Hcpc) Length		1e-15

>pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus C5321 From Cft073 E.Coli Strain Length = 490

Iteration: 1
 Score =  119 bits (297), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 179/342 (52%), Gaps = 22/342 (6%)
Query: 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVE 296
           A++G   A Y +GL Y  G  G+ +D  +A++W+ KAA KG PQ+ + LG +Y  G GV+
Sbjct: 70  AEQGYTPAEYVLGLRYMNG-EGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVK 128
Query: 297 RNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHY 356
            +  ++++W   AA Q   S    +G  Y +G GV  ++Y  A+E++ KAA+        
Sbjct: 129 VDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGV-TRDYVMAREWYSKAAEQGNVWSCN 187
Query: 357 NLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416
            LG MY +G+GV+R+  ++ +++  +A +G +     LA M++ G+G+ ++   +  L+ 
Sbjct: 188 QLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247
Query: 417 LVAERGPWSSLSRWALESYL-KGDVG-----KAFLLYSRMAELGYEVAQSNAAWILDKYG 470
             AE+G  +S++++ L   L +G  G     KA   Y + AE G    Q   A + DK  
Sbjct: 248 QSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGA 305
Query: 471 EGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEA 530
           EG            A+  + A S + +++EQG+  A   +G A Y+  G++ ++++A E 
Sbjct: 306 EGV-----------AKNREQAISWYTKSAEQGDATAQANLG-AIYFRLGSEEEHKKAVEW 353
Query: 531 YMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE 572
           +  A ++    A FNLG     G+G+  D   A  +  +A E
Sbjct: 354 FRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395

>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc) Length = 273

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 113/243 (46%), Gaps = 44/243 (18%)
Query: 332 EKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAF 391
           ++K++T+AK+YFEKA D +E  G +NLGV+YY+G GV++++K A  ++  A +  +    
Sbjct: 18  KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGC 77
Query: 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMA 451
           + L  ++++G G+ +N +                                KA   YS+  
Sbjct: 78  HLLGNLYYSGQGVSQNTN--------------------------------KALQYYSKAC 105
Query: 452 ELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIG 511
           +L Y    ++   I   Y +G +         D ++   A   + +A +  +     ++G
Sbjct: 106 DLKYAEGCASLGGI---YHDGKVVT------RDFKK---AVEYFTKACDLNDGDGCTILG 153
Query: 512 DAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQAL 571
             Y  GRGT +D ++A  +Y  A    ++   FN G M+ HG+G   +   A   Y +A 
Sbjct: 154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213
Query: 572 EVD 574
           E++
Sbjct: 214 ELE 216

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	672
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	1e-111
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	4e-79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	1e-70
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	1e-66
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	6e-60
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	9e-39
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	1e-31
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	7e-65
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	3e-61
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	2e-58
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	2e-53
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	1e-48
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	3e-40
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	1e-26
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	2e-15
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	4e-61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	1e-54
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	1e-51
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	2e-50
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	5e-40
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	3e-35
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	1e-17
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	2e-50
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	4e-44
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	5e-41
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	1e-34
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	1e-32
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	5e-28
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	5e-18
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	1e-14
1klx_A	138	Cysteine rich protein B; structural genomics, heli	2e-39
1klx_A	138	Cysteine rich protein B; structural genomics, heli	4e-33
1klx_A	138	Cysteine rich protein B; structural genomics, heli	2e-32
1klx_A	138	Cysteine rich protein B; structural genomics, heli	6e-19
1klx_A	138	Cysteine rich protein B; structural genomics, heli	5e-16
1klx_A	138	Cysteine rich protein B; structural genomics, heli	5e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-04

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score =  341 bits (878), Expect = e-111
 Identities = 117/481 (24%), Positives = 201/481 (41%), Gaps = 78/481 (16%)

Query: 103 GDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQS 162
               +      +++  A  G+  A+  LG+ Y  G    ++  +A  +   AAE G   +
Sbjct: 18  SLPALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPA 77

Query: 163 KMAVAYTYLR-----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG 217
           +  +   Y+      QD + +AV  Y                                  
Sbjct: 78  EYVLGLRYMNGEGVPQD-YAQAVIWY---------------------------------- 102

Query: 218 ALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG 277
             +K+              A KG   A   +G+ Y+ G  G++ D+ +++ WF  AA++G
Sbjct: 103 --KKA--------------ALKGLPQAQQNLGVMYHEG-NGVKVDKAESVKWFRLAAEQG 145

Query: 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYT 337
                + +G+ Y  G GV R+Y  A EW + AA Q    + N +GY+Y +G GVE+ N  
Sbjct: 146 RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVER-NDA 204

Query: 338 KAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397
            + +++ K+A + +  G  +L  MYY GIGV +D   +   F  +A  G+  A ++L  +
Sbjct: 205 ISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264

Query: 398 FHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG------DVGKAFLLYSRMA 451
              G+   K    A   Y+  AE+G        A   Y KG      +  +A   Y++ A
Sbjct: 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAH-LYDKGAEGVAKNREQAISWYTKSA 323

Query: 452 ELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIG 511
           E G   AQ+N   I  + G               E H+ A   + +A+ +G + A   +G
Sbjct: 324 EQGDATAQANLGAIYFRLG-------------SEEEHKKAVEWFRKAAAKGEKAAQFNLG 370

Query: 512 DAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQAL 571
           +A   G+G ++D ++AA     A  Q  + A   LG ++ +G G+  D   A  ++D A 
Sbjct: 371 NALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430

Query: 572 E 572
            
Sbjct: 431 T 431

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score =  259 bits (664), Expect = 4e-79
 Identities = 110/462 (23%), Positives = 204/462 (44%), Gaps = 80/462 (17%)

Query: 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR-----QD 174
           M+    A  + G    + +                AE G  ++++ + Y Y +     +D
Sbjct: 1   MKKSLLAVMLTGLFALVSL--PALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKD 58

Query: 175 MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILE 234
              +A+  +                                    R++            
Sbjct: 59  -LTQAMDWF------------------------------------RRA------------ 69

Query: 235 YQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAG 294
             A++G   A Y +GL Y  G  G+ +D  +A++W+ KAA KG PQ+ + LG +Y  G G
Sbjct: 70  --AEQGYTPAEYVLGLRYMNG-EGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNG 126

Query: 295 VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGG 354
           V+ +  ++++W   AA Q   S    +G  Y +G GV  ++Y  A+E++ KAA+      
Sbjct: 127 VKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT-RDYVMAREWYSKAAEQGNVWS 185

Query: 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATAL 414
              LG MY +G+GV+R+  ++ +++  +A +G +     LA M++ G+G+ ++   +  L
Sbjct: 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVL 245

Query: 415 YKLVAERGPWSSLSRWAL-ESYLKG-----DVGKAFLLYSRMAELGYEVAQSNAAWILDK 468
           +   AE+G  +S++++ L     +G     +  KA   Y + AE G    Q   A + DK
Sbjct: 246 FSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDK 303

Query: 469 YGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAA 528
                   G  G   + E+   A S + +++EQG+  A   +G A Y+  G++ ++++A 
Sbjct: 304 --------GAEGVAKNREQ---AISWYTKSAEQGDATAQANLG-AIYFRLGSEEEHKKAV 351

Query: 529 EAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQA 570
           E +  A ++    A FNLG     G+G+  D   A  +  +A
Sbjct: 352 EWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score =  236 bits (605), Expect = 1e-70
 Identities = 85/337 (25%), Positives = 149/337 (44%), Gaps = 22/337 (6%)

Query: 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKA 302
            ++  + L   F L  L       L    + A+ GE ++   LG  Y +G    ++ T+A
Sbjct: 3   KSLLAVMLTGLFALVSLPALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQA 62

Query: 303 LEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMY 362
           ++W   AA Q    A   +G  Y+ G GV + +Y +A  +++KAA         NLGVMY
Sbjct: 63  MDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQ-DYAQAVIWYKKAALKGLPQAQQNLGVMY 121

Query: 363 YKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422
           ++G GVK D   + K+F +AA  G       +   +  G G+ ++  MA   Y   AE+G
Sbjct: 122 HEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG 181

Query: 423 PWSSLSRWAL-ESYLKG-----DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCM 476
             +  S   L   Y +G     +   +   Y + A  G E+ Q + A +   +G G    
Sbjct: 182 --NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYY-FGIGV--- 235

Query: 477 GESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS 536
                    + +  +  L+ Q++EQGN  A   +G     G    ++  +A E Y  +  
Sbjct: 236 --------TQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE 287

Query: 537 QSNAQAMFNLGYMHEHG-QGLPLDLHLAKRYYDQALE 572
           Q N+   + L ++++ G +G+  +   A  +Y ++ E
Sbjct: 288 QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score =  225 bits (577), Expect = 1e-66
 Identities = 99/464 (21%), Positives = 173/464 (37%), Gaps = 107/464 (23%)

Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTY---LR 172
           AA++G P A+  LG +Y  G   + +K ++  +   AAE G    Q  M  AY     + 
Sbjct: 105 AALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT 164

Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQI 232
           +D +  A + Y                                     K+          
Sbjct: 165 RD-YVMAREWY------------------------------------SKA---------- 177

Query: 233 LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARG 292
               A++GN  +  ++G  Y  G  G+ R+   +  W+ K+A  G+      L ++Y  G
Sbjct: 178 ----AEQGNVWSCNQLGYMYSRG-LGVERNDAISAQWYRKSATSGDELGQLHLADMYYFG 232

Query: 293 AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA 352
            GV ++YT++    + +A Q    A   +GY+  +G     K   KA E++ K+A+   +
Sbjct: 233 IGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGA-KEPLKALEWYRKSAEQGNS 291

Query: 353 GGHYNLGVMYYKGI-GVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMA 411
            G Y L  +Y KG  GV ++ + A  ++  +A  G   A   L  ++   +G ++     
Sbjct: 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYF-RLGSEEEHK-- 348

Query: 412 TALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGE 471
                                         KA   + + A  G + AQ N    L   G+
Sbjct: 349 ------------------------------KAVEWFRKAAAKGEKAAQFNLGNALL-QGK 377

Query: 472 GSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAY 531
           G             +  Q A     +A+EQG   A + +G+ YYYG G +RDY +A   +
Sbjct: 378 G----------VKKDEQQ-AAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWF 426

Query: 532 MHARSQSNAQAMFNLGYMHE---HGQGLPLDLHLAKRYYDQALE 572
             A +            + E     + L     L+++Y ++   
Sbjct: 427 DTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKYAP 470

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score =  208 bits (531), Expect = 6e-60
 Identities = 85/364 (23%), Positives = 155/364 (42%), Gaps = 35/364 (9%)

Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR----- 172
           AA +G    +  +G  Y  G    R+   A  ++  AAE GN+ S   + Y Y R     
Sbjct: 141 AAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVE 200

Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL-RKSRG---EDDE 228
           ++    + + Y + A                         + +   +     G   +  +
Sbjct: 201 RN-DAISAQWYRKSATSG------------------DELGQLHLADMYYFGIGVTQDYTQ 241

Query: 229 AFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEI 288
           +  +    A++GN+ A +++G     G     ++  KAL W+ K+A++G      +L  +
Sbjct: 242 SRVLFSQSAEQGNSIAQFRLGYILEQG-LAGAKEPLKALEWYRKSAEQGNSDGQYYLAHL 300

Query: 289 YARGA-GVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA 347
           Y +GA GV +N  +A+ W T +A Q   +A   +G +Y    G E+  + KA E+F KAA
Sbjct: 301 YDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIY-FRLGSEE-EHKKAVEWFRKAA 358

Query: 348 DNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKN 407
              E    +NLG    +G GVK+D + A  +   AA  G   A  QL ++++ G+G++++
Sbjct: 359 AKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418

Query: 408 LHMATALYKLVAERG--PWSSLSRWALESYLKG-DVGKAFLLYSRMAELGYEVAQSNAAW 464
              A A +   +      + + +R   E  L    + +A LL  +  E     A +    
Sbjct: 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKYAPEAWARMQK 478

Query: 465 ILDK 468
           +  +
Sbjct: 479 LKAQ 482

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score =  148 bits (377), Expect = 9e-39
 Identities = 62/285 (21%), Positives = 112/285 (39%), Gaps = 51/285 (17%)

Query: 116 ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDM 175
             +A +G+  A+  LG++   G+   +   KA  ++  +AE GN   +  +A+ Y +   
Sbjct: 247 SQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGA- 305

Query: 176 HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235
                                              G  +N           ++A      
Sbjct: 306 ----------------------------------EGVAKN----------REQAISWYTK 321

Query: 236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGV 295
            A++G+A A   +G  Y+    G   +  KA+ WF KAA KGE  +   LG    +G GV
Sbjct: 322 SAEQGDATAQANLGAIYF--RLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGV 379

Query: 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH 355
           +++  +A  W+  AA Q L +A   +G +Y  G GVE ++Y +A  +F+ A+ N+     
Sbjct: 380 KKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE-RDYVQAWAWFDTASTNDMNLFG 438

Query: 356 YNLGVMYYK---GIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397
                +  K      +++   L+ +Y    A     +     A+ 
Sbjct: 439 TENRNITEKKLTAKQLQQAELLSQQYIEKYAPEAWARMQKLKAQS 483

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score =  128 bits (323), Expect = 1e-31
 Identities = 52/262 (19%), Positives = 95/262 (36%), Gaps = 61/262 (23%)

Query: 116 ESAAMEGDPHARSVLGFLYGMGMM-RERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQD 174
             +A +G+   +  L  LY  G     +N+ +A  ++  +AE G+  ++  +   Y R  
Sbjct: 283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG 342

Query: 175 M---HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQ 231
               H KAV+ +                                    RK+         
Sbjct: 343 SEEEHKKAVEWF------------------------------------RKA--------- 357

Query: 232 ILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYAR 291
                A KG   A + +G     G +G+++D  +A +W  KAA++G   +   LGEIY  
Sbjct: 358 -----AAKGEKAAQFNLGNALLQG-KGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYY 411

Query: 292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVE--KKNYTKAKEYFEKAADN 349
           G GVER+Y +A  W   A+   +         +  K    +  ++    +++Y EK A  
Sbjct: 412 GLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKYAPE 471

Query: 350 EEAGGHYNLGVMYYKGIGVKRD 371
                   +  +  +      +
Sbjct: 472 ----AWARMQKLKAQSAVKTGN 489

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score =  214 bits (547), Expect = 7e-65
 Identities = 75/317 (23%), Positives = 117/317 (36%), Gaps = 50/317 (15%)

Query: 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERN 298
           + +   +  +G   Y       +D T+A  +F KA D  E      LG +Y +G GVE+N
Sbjct: 3   EQDPKELVGLGAKSYKE-----KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKN 57

Query: 299 YTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNL 358
             KA  +   A      +  + +G LY  G GV + N  KA +Y+ KA D + A G  +L
Sbjct: 58  LKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQ-NTNKALQYYSKACDLKYAEGCASL 116

Query: 359 GVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV 418
           G +Y+ G  V RD K A +YF  A +         L  ++  G G  K+L          
Sbjct: 117 GGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLK--------- 167

Query: 419 AERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGE 478
                                  KA   Y +  +L       NA  +   +GEG+     
Sbjct: 168 -----------------------KALASYDKACDLKDSPGCFNAGNMYH-HGEGA----- 198

Query: 479 SGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS 538
                  +  + A + + +A E  N      +G   Y G G  R+ ++A E +       
Sbjct: 199 ------TKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252

Query: 539 NAQAMFNLGYMHEHGQG 555
              A   L  +      
Sbjct: 253 AKGACDILKQLKIKVHH 269

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score =  204 bits (522), Expect = 3e-61
 Identities = 64/260 (24%), Positives = 105/260 (40%), Gaps = 10/260 (3%)

Query: 215 NKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA 274
             GA      +  +A +  E           + +G+ YY G +G+ ++  KA  +++KA 
Sbjct: 11  GLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQG-QGVEKNLKKAASFYAKAC 69

Query: 275 DKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKK 334
           D         LG +Y  G GV +N  KAL++ + A   +       +G +Y  G  V  +
Sbjct: 70  DLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT-R 128

Query: 335 NYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQL 394
           ++ KA EYF KA D  +  G   LG +Y  G G  +D+K A   +  A +       +  
Sbjct: 129 DFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNA 188

Query: 395 AKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWAL-ESYLKG-----DVGKAFLLYS 448
             M+H G G  KN   A A Y    E    +    + L      G     +  +A   + 
Sbjct: 189 GNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFK 246

Query: 449 RMAELGYEVAQSNAAWILDK 468
           +  +LG + A      +  K
Sbjct: 247 KGCKLGAKGACDILKQLKIK 266

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score =  197 bits (503), Expect = 2e-58
 Identities = 68/307 (22%), Positives = 111/307 (36%), Gaps = 62/307 (20%)

Query: 121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTY---LRQDM 175
           E DP     LG        +E++  +A  Y   A +         + V Y     + ++ 
Sbjct: 3   EQDPKELVGLGAKSY----KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKN- 57

Query: 176 HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235
             KA   Y                                     K+             
Sbjct: 58  LKKAASFY------------------------------------AKA------------- 68

Query: 236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGV 295
                 +   + +G  YY G +G+ ++  KAL ++SKA D    +    LG IY  G  V
Sbjct: 69  -CDLNYSNGCHLLGNLYYSG-QGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126

Query: 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH 355
            R++ KA+E+ T A           +G LY  G G  K +  KA   ++KA D +++ G 
Sbjct: 127 TRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPK-DLKKALASYDKACDLKDSPGC 185

Query: 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALY 415
           +N G MY+ G G  ++ K A   +  A    +    + L  M + G G+ +N   A   +
Sbjct: 186 FNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENF 245

Query: 416 KLVAERG 422
           K   + G
Sbjct: 246 KKGCKLG 252

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score =  183 bits (468), Expect = 2e-53
 Identities = 67/294 (22%), Positives = 102/294 (34%), Gaps = 58/294 (19%)

Query: 109 EEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAY 168
            +A    E A    +      LG LY  G   E+N  KA  ++  A +         +  
Sbjct: 23  TQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 82

Query: 169 TYLR-----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSR 223
            Y       Q+  +KA++ Y                                     K+ 
Sbjct: 83  LYYSGQGVSQN-TNKALQYY------------------------------------SKA- 104

Query: 224 GEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSME 283
                             A     +G  Y+ G + + RD  KA+ +F+KA D  +     
Sbjct: 105 -------------CDLKYAEGCASLGGIYHDG-KVVTRDFKKAVEYFTKACDLNDGDGCT 150

Query: 284 FLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYF 343
            LG +Y  G G  ++  KAL     A   +        G +Y  G G   KN+ +A   +
Sbjct: 151 ILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT-KNFKEALARY 209

Query: 344 EKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397
            KA + E  GG +NLG M Y G GV R+ K A + F      G + A   L ++
Sbjct: 210 SKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQL 263

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score =  170 bits (434), Expect = 1e-48
 Identities = 62/260 (23%), Positives = 117/260 (45%), Gaps = 25/260 (9%)

Query: 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLAC 376
              G+G    K     +K++T+AK+YFEKA D +E  G +NLGV+YY+G GV++++K A 
Sbjct: 8   ELVGLGAKSYK-----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAA 62

Query: 377 KYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWAL-ESY 435
            ++  A +  +    + L  ++++G G+ +N + A   Y    +     +    +L   Y
Sbjct: 63  SFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIY 120

Query: 436 LKG-----DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQC 490
             G     D  KA   +++  +L      +    +   Y  G       G   D ++   
Sbjct: 121 HDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSL---YDAG------RGTPKDLKK--- 168

Query: 491 AHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMH 550
           A + + +A +  +       G+ Y++G G  ++++ A   Y  A    N    FNLG M 
Sbjct: 169 ALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQ 228

Query: 551 EHGQGLPLDLHLAKRYYDQA 570
            +G+G+  +   A   + + 
Sbjct: 229 YNGEGVTRNEKQAIENFKKG 248

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score =  147 bits (374), Expect = 3e-40
 Identities = 49/253 (19%), Positives = 78/253 (30%), Gaps = 58/253 (22%)

Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTY---LR 172
           A      +   +LG LY  G    +N  KA  Y+  A +       + +   Y     + 
Sbjct: 68  ACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 127

Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQI 232
           +D   KAV+ +                                     K+          
Sbjct: 128 RD-FKKAVEYF------------------------------------TKA---------- 140

Query: 233 LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARG 292
                   +      +G  Y  G RG  +D  KAL  + KA D  +       G +Y  G
Sbjct: 141 ----CDLNDGDGCTILGSLYDAG-RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHG 195

Query: 293 AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA 352
            G  +N+ +AL   + A   +       +G +   G GV  +N  +A E F+K       
Sbjct: 196 EGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVT-RNEKQAIENFKKGCKLGAK 254

Query: 353 GGHYNLGVMYYKG 365
           G    L  +  K 
Sbjct: 255 GACDILKQLKIKV 267

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score =  109 bits (274), Expect = 1e-26
 Identities = 37/221 (16%), Positives = 65/221 (29%), Gaps = 57/221 (25%)

Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTY---LR 172
           A         + LG +Y  G +  R+  KA  Y   A +  +    + +   Y       
Sbjct: 104 ACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTP 163

Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQI 232
           +D   KA+  Y                                     K+          
Sbjct: 164 KD-LKKALASY------------------------------------DKA---------- 176

Query: 233 LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARG 292
                   ++   +  G  Y+ G  G  ++  +AL  +SKA +         LG +   G
Sbjct: 177 ----CDLKDSPGCFNAGNMYHHG-EGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231

Query: 293 AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEK 333
            GV RN  +A+E      +     A + +  L +K +    
Sbjct: 232 EGVTRNEKQAIENFKKGCKLGAKGACDILKQLKIKVHHHHH 272

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 26/186 (13%), Positives = 52/186 (27%), Gaps = 57/186 (30%)

Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTY---LR 172
           A    D    ++LG LY  G    ++  KA   +  A +  +          Y +     
Sbjct: 140 ACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199

Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQI 232
           ++   +A+  Y                                     K+          
Sbjct: 200 KNF-KEALARY------------------------------------SKA---------- 212

Query: 233 LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARG 292
                +  N G  + +G   Y G  G+ R+  +A+  F K    G   + + L ++  + 
Sbjct: 213 ----CELENGGGCFNLGAMQYNG-EGVTRNEKQAIENFKKGCKLGAKGACDILKQLKIKV 267

Query: 293 AGVERN 298
                +
Sbjct: 268 HHHHHH 273

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score =  210 bits (536), Expect = 4e-61
 Identities = 62/409 (15%), Positives = 116/409 (28%), Gaps = 42/409 (10%)

Query: 168 YTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRG--E 225
               R D    A + Y +LAE                    ++ A+     ++       
Sbjct: 12  EALKRGD-TVTAQQNYQQLAE------------------LGYSEAQVGLADIQVGTRDPA 52

Query: 226 DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFL 285
             +  +     A   +  A  ++G            +  +A     KA   GE  ++  L
Sbjct: 53  QIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPL 112

Query: 286 GEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEK 345
             +Y +      N     +  +         A      LY +  G     +    E   K
Sbjct: 113 AMLYLQYPHSFPNVNAQQQI-SQWQAAGYPEAGLAQVLLY-RTQGTY-DQHLDDVERICK 169

Query: 346 AADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFH--TGVG 403
           AA N     +  L  +Y K    ++  +   K      + G   A    +          
Sbjct: 170 AALNTTDICYVELATVYQKKQQPEQQAE-LLKQMEAGVSRGTVTAQRVDSVARVLGDATL 228

Query: 404 LKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSN 461
              +   A AL + +A   P  W SL++   +    GDV +               A+  
Sbjct: 229 GTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELL 288

Query: 462 AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQ 521
              +    G+                 + A + + +A  +    A   +G  Y  G   +
Sbjct: 289 LGKLYY-EGKWV-----------PADAKAAEAHFEKAVGREVA-ADYYLGQIYRRGYLGK 335

Query: 522 RDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQA 570
              ++A +  + A       A F +  +   G+G   D   A  +   A
Sbjct: 336 VYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score =  192 bits (490), Expect = 1e-54
 Identities = 72/458 (15%), Positives = 123/458 (26%), Gaps = 55/458 (12%)

Query: 109 EEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAY 168
             A    +  A  G   A+  L  +      R+  + K     + AA   + +++  +  
Sbjct: 20  VTAQQNYQQLAELGYSEAQVGLADIQVGT--RDPAQIKQAEATYRAAADTSPRAQARLGR 77

Query: 169 TYLR-----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL-RKS 222
                    +  H +A  L  +                                 L  + 
Sbjct: 78  LLAAKPGATEAEHHEAESLLKKAFANG------------------EGNTLIPLAMLYLQY 119

Query: 223 RG--EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQ 280
                +  A Q +      G   A     L Y    +G        +    KAA      
Sbjct: 120 PHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYR--TQGTYDQHLDDVERICKAALNTTDI 177

Query: 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVE-KKNYTKA 339
               L  +Y +    E    + L+ +     +   +A        V G       +   A
Sbjct: 178 CYVELATVYQKKQQPE-QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236

Query: 340 KEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFH 399
           +   EK A         +L  + Y       DV+   KY      A   +A   L K+++
Sbjct: 237 QALLEKIAPGY-PASWVSLAQLLY-DFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY 294

Query: 400 TGVGLKKNLHMATALYKLVAERGPWSSLSRWAL-ESYLKG-----DVGKAFLLYSRMAEL 453
            G  +  +   A A ++    R   +    + L + Y +G        KA       A  
Sbjct: 295 EGKWVPADAKAAEAHFEKAVGREVAA---DYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351

Query: 454 GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDA 513
           G   A    A +   + +G       G   D      A+     A  Q    A  L    
Sbjct: 352 GQNSADFAIAQL---FSQGK------GTKPDPLN---AYVFSQLAKAQDTPEANDLATQL 399

Query: 514 YYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHE 551
                  QR   +       A   + AQ+   L  + E
Sbjct: 400 EAPLTPAQRAEGQRLVQQELAARGTLAQSTLQLHALQE 437

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score =  184 bits (468), Expect = 1e-51
 Identities = 50/322 (15%), Positives = 97/322 (30%), Gaps = 21/322 (6%)

Query: 260 RRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYN 319
           R D   A   + + A+ G  ++   L +I   G        +A      AA     +   
Sbjct: 16  RGDTVTAQQNYQQLAELGYSEAQVGLADIQV-GTRDPAQIKQAEATYRAAADTSPRAQAR 74

Query: 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYF 379
            +G L     G  +  + +A+   +KA  N E      L ++Y +      +V    +  
Sbjct: 75  -LGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQIS 133

Query: 380 LVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG- 438
                AG+ +A      + +   G               A           A   Y K  
Sbjct: 134 Q-WQAAGYPEAGLAQV-LLYRTQGTYDQHLDDVERICKAALNTTDICYVELAT-VYQKKQ 190

Query: 439 ---DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLW 495
                 +           G   AQ   +      G+           T     +      
Sbjct: 191 QPEQQAELLKQMEAGVSRGTVTAQRVDSVARV-LGDA----------TLGTPDEKTAQAL 239

Query: 496 WQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQG 555
            +    G   + + +     Y      D E+  +   + R+    +A   LG ++  G+ 
Sbjct: 240 LEKIAPGYPASWVSLA-QLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKW 298

Query: 556 LPLDLHLAKRYYDQALEVDPAA 577
           +P D   A+ ++++A+  + AA
Sbjct: 299 VPADAKAAEAHFEKAVGREVAA 320

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score =  180 bits (459), Expect = 2e-50
 Identities = 72/374 (19%), Positives = 124/374 (33%), Gaps = 34/374 (9%)

Query: 109 EEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAY 168
            EA S ++ A   G+ +    L  LY        N         + A  G  ++ +A   
Sbjct: 91  HEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-GYPEAGLAQVL 149

Query: 169 TYLRQDM---HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL-RKSRG 224
            Y  Q     H   V+   + A                      +        + +K + 
Sbjct: 150 LYRTQGTYDQHLDDVERICKAALNT------------------TDICYVELATVYQKKQQ 191

Query: 225 EDD--EAFQILEYQAQKGNAGAMYKIGLFYYFGL-RGLRRDRTKALMWFSKAADKGEPQS 281
            +   E  + +E    +G   A     +    G       D   A     K A  G P S
Sbjct: 192 PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPAS 250

Query: 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKE 341
              L ++         +  + +++L +        A   +G LY +G  V   +   A+ 
Sbjct: 251 WVSLAQLLYDF-PELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVP-ADAKAAEA 308

Query: 342 YFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTG 401
           +FEKA   E A   Y LG +Y +G   K   + A  + L AA  G   A + +A++F  G
Sbjct: 309 HFEKAVGREVA-ADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQG 367

Query: 402 VGLKKNLHMATALYKLVAERG-PWSSLSRWALESYLKG---DVGKAFLLYSRMAELGYEV 457
            G K +   A    +L   +  P ++     LE+ L       G+  +     A      
Sbjct: 368 KGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQ 427

Query: 458 AQSNAAWILDKYGE 471
           +      + ++ GE
Sbjct: 428 STLQLHALQEEDGE 441

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score =  151 bits (384), Expect = 5e-40
 Identities = 54/306 (17%), Positives = 94/306 (30%), Gaps = 32/306 (10%)

Query: 101 TNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI 160
           T G      +    +  AA+         L  +Y      E+   +           G +
Sbjct: 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQA-ELLKQMEAGVSRGTV 211

Query: 161 --QSKMAVAYTY----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE 214
             Q   +VA       L       A  L  ++A                     +  +  
Sbjct: 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPG-------------------YPASWV 252

Query: 215 NKGALRKSRGE---DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFS 271
           +   L     E    ++  + L+         A   +G  YY G + +  D   A   F 
Sbjct: 253 SLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEG-KWVPADAKAAEAHFE 311

Query: 272 KAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGV 331
           KA  +    +  +LG+IY RG   +    KAL+ L  AAR    SA   I  L+ +G G 
Sbjct: 312 KAVGRE-VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGT 370

Query: 332 EKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAF 391
           +  +   A  + + A   +    +     +       +R          +AA     ++ 
Sbjct: 371 KP-DPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQST 429

Query: 392 YQLAKM 397
            QL  +
Sbjct: 430 LQLHAL 435

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score =  137 bits (348), Expect = 3e-35
 Identities = 42/297 (14%), Positives = 76/297 (25%), Gaps = 24/297 (8%)

Query: 282 MEFLGEIY-ARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAK 340
           M  L +   A  A    +   A +     A      A  G+  + V           +A+
Sbjct: 1   MAGLPDQRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRD--PAQIKQAE 58

Query: 341 EYFEKAADNEEAGGHYNLGVMYYKGIG-VKRDVKLACKYFLVAANAGHQKAFYQLAKMFH 399
             +  AAD         LG +     G  + +   A      A   G       LA ++ 
Sbjct: 59  ATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYL 117

Query: 400 TGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG--DVGKAFLLYSRMAELGYEV 457
                  N++    + +  A   P + L++  L                  + A    ++
Sbjct: 118 QYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI 177

Query: 458 AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYG 517
                A +  K  +              E+             +G   A  +   A   G
Sbjct: 178 CYVELATVYQK-KQQ------------PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG 224

Query: 518 RGT--QRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE 572
             T    D + A              +  +L  +      L  D+    +Y D    
Sbjct: 225 DATLGTPDEKTAQALLEKIAPG-YPASWVSLAQLLYDFPELG-DVEQMMKYLDNGRA 279

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 15/152 (9%)

Query: 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488
           R A E+  +GD   A   Y ++AELGY  AQ   A I     +                 
Sbjct: 8   RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRD--------------PAQ 53

Query: 489 QCAHSLWWQASEQGNEHAALLIGDAYYYGRG-TQRDYERAAEAYMHARSQSNAQAMFNLG 547
                  ++A+   +  A   +G       G T+ ++  A      A +      +  L 
Sbjct: 54  IKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLA 113

Query: 548 YMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL 579
            ++        +++  ++         P A L
Sbjct: 114 MLYLQYPHSFPNVNAQQQISQWQAAGYPEAGL 145

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score =  173 bits (441), Expect = 2e-50
 Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 14/204 (6%)

Query: 226 DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFL 285
             E     + QA+ G+  A Y +   +         D  KA  W  KAA +G+  ++  L
Sbjct: 2   ATEPGSQYQQQAEAGDRRAQYYLADTWVSS-----GDYQKAEYWAQKAAAQGDGDALALL 56

Query: 286 GEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEK 345
            ++  R    + +Y +A +    A      S    +  + V        +   A    + 
Sbjct: 57  AQLKIRN-PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGA-TDVAHAITLLQD 114

Query: 346 AADNEEAGGH----YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ-KAFYQLAKMFHT 400
           AA + E+         LG++Y  G+    D   A +YF  +++      A Y    MF  
Sbjct: 115 AARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQ 174

Query: 401 GVGL--KKNLHMATALYKLVAERG 422
           G     + N   A     +    G
Sbjct: 175 GEKGFIEPNKQKALHWLNVSCLEG 198

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score =  156 bits (397), Expect = 4e-44
 Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 11/183 (6%)

Query: 223 RGEDD-EAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQS 281
              D  +A    +  A +G+  A+  +           + D  +A     KA + G    
Sbjct: 30  SSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRN--PQQADYPQARQLAEKAVEAGSKSG 87

Query: 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQ----QLYSAYNGIGYLYVKGYGVEKKNYT 337
              L  +         +   A+  L  AAR         A   +G +Y  G     ++  
Sbjct: 88  EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP-EDDV 146

Query: 338 KAKEYFEKAADN-EEAGGHYNLGVMYYKGIG--VKRDVKLACKYFLVAANAGHQKAFYQL 394
           KA EYF+ ++         Y  G+M+ +G    ++ + + A  +  V+   G      + 
Sbjct: 147 KASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEF 206

Query: 395 AKM 397
            ++
Sbjct: 207 DRI 209

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score =  147 bits (374), Expect = 5e-41
 Identities = 37/209 (17%), Positives = 72/209 (34%), Gaps = 17/209 (8%)

Query: 264 TKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGY 323
           T+    + + A+ G+ ++  +L + +        +Y KA  W   AA Q    A   +  
Sbjct: 3   TEPGSQYQQQAEAGDRRAQYYLADTWVSS----GDYQKAEYWAQKAAAQGDGDALALLAQ 58

Query: 324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383
           L ++     + +Y +A++  EKA +     G   L  +         DV  A      AA
Sbjct: 59  LKIRNPQ--QADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAA 116

Query: 384 NAGHQK----AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG- 438
                     A   L  ++ +GV   ++   A+  +K  +          WA   + +G 
Sbjct: 117 RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGE 176

Query: 439 ------DVGKAFLLYSRMAELGYEVAQSN 461
                 +  KA    +     G++     
Sbjct: 177 KGFIEPNKQKALHWLNVSCLEGFDTGCEE 205

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score =  130 bits (328), Expect = 1e-34
 Identities = 40/265 (15%), Positives = 71/265 (26%), Gaps = 66/265 (24%)

Query: 109 EEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAY 168
            E  S+ +  A  GD  A+  L   +        +  KA  +   AA  G+  +   +A 
Sbjct: 3   TEPGSQYQQQAEAGDRRAQYYLADTWVSS----GDYQKAEYWAQKAAAQGDGDALALLAQ 58

Query: 169 TYLR----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRG 224
             +R     D + +A +L                                      K+  
Sbjct: 59  LKIRNPQQAD-YPQARQLA------------------------------------EKA-- 79

Query: 225 EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEF 284
                        + G+      +        +    D   A+     AA   E  +   
Sbjct: 80  ------------VEAGSKSGEIVLARVLVNR-QAGATDVAHAITLLQDAARDSESDAAVD 126

Query: 285 ----LGEIYARGAGVERNYTKALEWLTHAARQQLYS-AYNGIGYLYVKGYGVE-KKNYTK 338
               LG IYA G     +  KA E+   ++       A    G ++ +G     + N  K
Sbjct: 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQK 186

Query: 339 AKEYFEKAADNEEAGGHYNLGVMYY 363
           A  +   +       G      +  
Sbjct: 187 ALHWLNVSCLEGFDTGCEEFDRISK 211

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score =  123 bits (312), Expect = 1e-32
 Identities = 33/254 (12%), Positives = 62/254 (24%), Gaps = 49/254 (19%)

Query: 300 TKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLG 359
           T+        A      A   +   +V        +Y KA+ + +KAA   +      L 
Sbjct: 3   TEPGSQYQQQAEAGDRRAQYYLADTWVSS-----GDYQKAEYWAQKAAAQGDGDALALLA 57

Query: 360 VMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419
            +  +    + D   A +    A  AG +     LA++         ++  A  L +  A
Sbjct: 58  QLKIRN-PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAA 116

Query: 420 ERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGES 479
                                                 AQ     I   Y  G       
Sbjct: 117 RDS----------------------------ESDAAVDAQMLLGLI---YASGV------ 139

Query: 480 GFCTDAERHQCAHSLWWQASEQGNEHAA-LLIGDAYYYGRGT--QRDYERAAEAYMHARS 536
               D  +   A   +  +S       A    G  +  G     + + ++A      +  
Sbjct: 140 HGPEDDVK---ASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196

Query: 537 QSNAQAMFNLGYMH 550
           +           + 
Sbjct: 197 EGFDTGCEEFDRIS 210

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score =  111 bits (279), Expect = 5e-28
 Identities = 38/241 (15%), Positives = 70/241 (29%), Gaps = 56/241 (23%)

Query: 337 TKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAK 396
           T+    +++ A+  +    Y L   +        D + A  +   AA  G   A   LA+
Sbjct: 3   TEPGSQYQQQAEAGDRRAQYYLADTWVSS----GDYQKAEYWAQKAAAQGDGDALALLAQ 58

Query: 397 MFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYE 456
           +                                         D  +A  L  +  E G +
Sbjct: 59  LKIRNPQQA---------------------------------DYPQARQLAEKAVEAGSK 85

Query: 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNE----HAALLIGD 512
             +   A +L    +             A     A +L   A+          A +L+G 
Sbjct: 86  SGEIVLARVLV-NRQA-----------GATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133

Query: 513 AYYYGRGTQRDYERAAEAYMHARSQSN-AQAMFNLGYMHEHGQGL--PLDLHLAKRYYDQ 569
            Y  G     D  +A+E +  + S S    A +  G M + G+      +   A  + + 
Sbjct: 134 IYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNV 193

Query: 570 A 570
           +
Sbjct: 194 S 194

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 82.3 bits (204), Expect = 5e-18
 Identities = 35/230 (15%), Positives = 67/230 (29%), Gaps = 65/230 (28%)

Query: 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMA 165
            ++A    + AA +GD  A ++L  L      ++ +  +A      A E G+   +  +A
Sbjct: 34  YQKAEYWAQKAAAQGDGDALALLAQLKIRN-PQQADYPQARQLAEKAVEAGSKSGEIVLA 92

Query: 166 VAYTY---LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKS 222
                      D    A+ L                                     + +
Sbjct: 93  RVLVNRQAGATD-VAHAITLL------------------------------------QDA 115

Query: 223 RGEDDEAFQILEYQAQKGNA----GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE 278
                         A+   +     A   +GL Y  G      D  KA  +F  ++    
Sbjct: 116 --------------ARDSESDAAVDAQMLLGLIYASG-VHGPEDDVKASEYFKGSSSLSR 160

Query: 279 -PQSMEFLGEIYARGAG--VERNYTKALEWLTHAARQQLYSAYNGIGYLY 325
              +  + G ++ +G    +E N  KAL WL  +  +   +       + 
Sbjct: 161 TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRIS 210

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 24/135 (17%), Positives = 39/135 (28%), Gaps = 18/135 (13%)

Query: 438 GDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQ 497
           G   +    Y + AE G   AQ   A     +              D ++   A     +
Sbjct: 1   GAT-EPGSQYQQQAEAGDRRAQYYLADT---WVSSG----------DYQK---AEYWAQK 43

Query: 498 ASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLP 557
           A+ QG+  A  L+            DY +A +    A    +      L  +  + Q   
Sbjct: 44  AAAQGDGDALALLAQLKIRNPQQA-DYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGA 102

Query: 558 LDLHLAKRYYDQALE 572
            D+  A      A  
Sbjct: 103 TDVAHAITLLQDAAR 117

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score =  140 bits (356), Expect = 2e-39
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 7/138 (5%)

Query: 257 RGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYS 316
             +++D  KA+ ++ KA +  E      L          + N  K  ++L+ A      +
Sbjct: 5   GTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSGN 58

Query: 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLAC 376
               +G  Y  G  V+K +  KA +Y+ KA    +  G   LG   Y G GV ++ K A 
Sbjct: 59  GCRFLGDFYENGKYVKK-DLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117

Query: 377 KYFLVAANAGHQKAFYQL 394
           K F  A   G + A   L
Sbjct: 118 KTFEKACRLGSEDACGIL 135

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score =  122 bits (310), Expect = 4e-33
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE 351
           G  V+++  KA+++   A           +           + N  K  +Y  KA +   
Sbjct: 4   GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNS-------QINKQKLFQYLSKACELNS 56

Query: 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMA 411
             G   LG  Y  G  VK+D++ A +Y+  A     Q     L    + G G+ KN   A
Sbjct: 57  GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116

Query: 412 TALYKLVAERG 422
              ++     G
Sbjct: 117 VKTFEKACRLG 127

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score =  120 bits (304), Expect = 2e-32
 Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 8/134 (5%)

Query: 226 DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFL 285
             +A Q      +         +           + ++ K   + SKA +        FL
Sbjct: 11  LKKAIQYYVKACELNEMFGCLSLV-------SNSQINKQKLFQYLSKACELNSGNGCRFL 63

Query: 286 GEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEK 345
           G+ Y  G  V+++  KA ++ + A           +GY    G GV  KN  +A + FEK
Sbjct: 64  GDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVV-KNEKQAVKTFEK 122

Query: 346 AADNEEAGGHYNLG 359
           A           L 
Sbjct: 123 ACRLGSEDACGILN 136

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 82.5 bits (205), Expect = 6e-19
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 18/132 (13%)

Query: 439 DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA 498
           D+ KA   Y +  EL       +           S               Q       +A
Sbjct: 10  DLKKAIQYYVKACELNEMFGCLS-------LVSNS-----------QINKQKLFQYLSKA 51

Query: 499 SEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPL 558
            E  + +    +GD Y  G+  ++D  +AA+ Y  A   ++      LGY    G+G+  
Sbjct: 52  CELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVK 111

Query: 559 DLHLAKRYYDQA 570
           +   A + +++A
Sbjct: 112 NEKQAVKTFEKA 123

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 74.4 bits (184), Expect = 5e-16
 Identities = 29/185 (15%), Positives = 51/185 (27%), Gaps = 50/185 (27%)

Query: 363 YKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422
             G  VK+D+K A +Y++ A           L          + N               
Sbjct: 2   VGGGTVKKDLKKAIQYYVKACELNEMFGCLSL------VSNSQINKQ------------- 42

Query: 423 PWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFC 482
                              K F   S+  EL               Y  G          
Sbjct: 43  -------------------KLFQYLSKACELNSGNGCRFLGDF---YENGK------YVK 74

Query: 483 TDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQA 542
            D  +   A   + +A    ++   L++G   Y G+G  ++ ++A + +  A    +  A
Sbjct: 75  KDLRK---AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 131

Query: 543 MFNLG 547
              L 
Sbjct: 132 CGILN 136

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 62.9 bits (154), Expect = 5e-12
 Identities = 24/174 (13%), Positives = 43/174 (24%), Gaps = 63/174 (36%)

Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTY---LR 172
           A    +            +    + NK K F Y   A E  +      +   Y     ++
Sbjct: 21  ACELNEMFG------CLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVK 74

Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQI 232
           +D   KA + Y                                     K+          
Sbjct: 75  KD-LRKAAQYY------------------------------------SKA---------- 87

Query: 233 LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLG 286
                   +      +G   Y G +G+ ++  +A+  F KA   G   +   L 
Sbjct: 88  ----CGLNDQDGCLILGYKQYAG-KGVVKNEKQAVKTFEKACRLGSEDACGILN 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 1e-11
 Identities = 92/630 (14%), Positives = 172/630 (27%), Gaps = 182/630 (28%)

Query: 32  VLSQDDIKDSAASTDDESAAD---W--DDFGDS--ESMTEENLDPG-SW--SPVFEPSID 81
           +LS+++I     S D  S      W      +   +   EE L     +  SP+      
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 82  PGAINGSYYITISKMMSAVTNGDVRVM-------EEATSEVESAAMEGDPHARSVLGFLY 134
           P  +   Y     ++       D +V         +   ++  A +E  P    ++    
Sbjct: 105 PSMMTRMYIEQRDRL-----YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---D 156

Query: 135 GM-GMMRERNKGKAFLYHHFAAEGGN---IQSKMA--VAYTYLRQDMHDKAV-----KLY 183
           G+ G       GK ++    A +      +Q KM   + +  L+     + V     KL 
Sbjct: 157 GVLGS------GKTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGE------DD-------EAF 230
            ++      ++    D      +RIH+   E +  L+    E       +        AF
Sbjct: 207 YQIDP----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 231 ----QILEYQAQKGNA---GAMYKIGLFYYFGLRGLRRDRTKALMWFSKA---------- 273
               +IL     K       A     +        L  D  K+L    K           
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPR 320

Query: 274 -ADKGEPQSMEFLGEIYARGAGVERNYTK------------ALEWLTHAARQQLYSAYNG 320
                 P+ +  + E    G     N+              +L  L  A  ++++     
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR--- 377

Query: 321 IGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIG--VKRDVKLACKY 378
              L V                F  +A          L ++++  I   V   V    KY
Sbjct: 378 ---LSV----------------FPPSAHIPTI----LLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 379 FLVAANAGHQKAF----YQLAKMFHTGVGLKKNLH-MATALYKLVAERGPWSSLSRWALE 433
            LV       K        +       +  +  LH      Y +         L    L+
Sbjct: 415 SLV---EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPYLD 470

Query: 434 SYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHS 493
            Y        F  +     +G+ +         ++     M   +  F     RH    +
Sbjct: 471 QY--------FYSH-----IGHHLKNIEHP---ERMTLFRMVFLDFRFLEQKIRHDS--T 512

Query: 494 LWWQASEQGNEHAALLIGDAYYYGRGTQRD---YERAAEAYMHARSQSNAQAMFNLGYMH 550
            W  +    N      +    +Y      +   YER   A +               ++ 
Sbjct: 513 AWNASGSILN-----TLQQLKFYKPYICDNDPKYERLVNAILD--------------FLP 553

Query: 551 EHGQGLPLD-----LHLA-----KRYYDQA 570
           +  + L        L +A     +  +++A
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 5e-04
 Identities = 70/430 (16%), Positives = 122/430 (28%), Gaps = 146/430 (33%)

Query: 260 RRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ------ 313
               T  L W      K E    +F+ E+      +  NY    ++L    + +      
Sbjct: 60  AVSGTLRLFWTLL--SKQEEMVQKFVEEV------LRINY----KFLMSPIKTEQRQPSM 107

Query: 314 ---LYSA-----YNGIGYLYVKGYGVE-KKNYTKAKEYFEKAADNEEAGGHYNLGV--MY 362
              +Y       YN    ++ K Y V   + Y K ++   +    +      N+ +  + 
Sbjct: 108 MTRMYIEQRDRLYND-NQVFAK-YNVSRLQPYLKLRQALLELRPAK------NVLIDGV- 158

Query: 363 YKGIGVKRDVK--LACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKN----LHMATALYK 416
             G G     K  +A     V  +   Q       K+F   +    +    L M   L  
Sbjct: 159 -LGSG-----KTWVALD---VCLSYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 417 LVAERGPWSSLSRWALESYLKGDVGKAFLLYSR-MAELGYEVAQSNAAWILDKYGEGSMC 475
            +     W+S S  +    L+    +A L   R +    YE    N   +L         
Sbjct: 208 QI--DPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYE----NCLLVLL-------- 251

Query: 476 MGESGFCTDAERHQCAHSLW----WQASEQGNEHAALLIGDAYYYGRGTQRDYERA---- 527
                   +         +     W A    N    +L+         T R  +      
Sbjct: 252 --------N---------VQNAKAWNAF---NLSCKILL---------TTRFKQVTDFLS 282

Query: 528 AEAYMHAR--------SQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP---- 575
           A    H          +    +++  L Y+    Q LP           + L  +P    
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPR----------EVLTTNPRRLS 331

Query: 576 --AAKLPVTLALTSLWIRKNNADSFLVRLI----DAL--PEVYPRVEAWVENVFMEEGNV 627
             A  +   LA    W +  N D  L  +I    + L   E     +     VF    ++
Sbjct: 332 IIAESIRDGLATWDNW-KHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHI 387

Query: 628 TILTLFVCLL 637
             + L   L+
Sbjct: 388 PTILL--SLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 6e-04
 Identities = 48/382 (12%), Positives = 108/382 (28%), Gaps = 113/382 (29%)

Query: 3   ELTSTPKLIICLLILSLYPISLKARPFILVLSQDDIKDSAA------------STDDESA 50
            L  +     CLL+L                   +++++ A            +T  +  
Sbjct: 236 RLLKSKPYENCLLVL------------------LNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 51  ADWDDFGDSESMTEENLDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEE 110
               DF  + + T  +LD  S +    P                K +        + ++ 
Sbjct: 278 T---DFLSAATTTHISLDHHSMT--LTPD-------------EVKSLLL------KYLDC 313

Query: 111 ATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTY 170
              ++    +  +P   S++      G+    N      + H   +   + + +  +   
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDN------WKHVNCD--KLTTIIESSLNV 365

Query: 171 LRQDMHDKAVKLYAELAEIAVNSFLIS--------KDSPVIEPIRIHNGAEENKGALRKS 222
           L    +    K++  L+ +   S  I          D    + + + N        + K 
Sbjct: 366 LEPAEYR---KMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQ 420

Query: 223 RGEDDEAFQI----LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALM----WFS--- 271
               +    I    LE + +  N  A+++  + +Y   +    D          ++S   
Sbjct: 421 P--KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 272 ---KAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLY--- 325
              K  +  E   M     ++               +L    R    +A+N  G +    
Sbjct: 479 HHLKNIEHPE--RMTLFRMVFLD-----------FRFLEQKIRHD-STAWNASGSILNTL 524

Query: 326 --VKGYGVEKKNYTKAKEYFEK 345
             +K Y   K         +E+
Sbjct: 525 QQLKFY---KPYICDNDPKYER 543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 66/406 (16%), Positives = 114/406 (28%), Gaps = 100/406 (24%)

Query: 215 NKGALRKSRGEDDEAFQI-LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKA 273
             G+        D   Q              +   G            D    + +F  A
Sbjct: 20  GLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLC-----NAGDCRAGVAFFQAA 74

Query: 274 ------ADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHA--ARQQLY------SAYN 319
                   +        LG  Y        +Y KA+++  H     + +        +  
Sbjct: 75  IQAGTEDLRTLSAIYSQLGNAYFY----LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130

Query: 320 GIGYLYVKGYGVEKKNYTKAKEYFEKA-ADNEEAGGH-------YNLGVMYY-KGIGVKR 370
            +G             + +A    E+      + G         YNLG +Y+ KG   K 
Sbjct: 131 NLGNTLK-----VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG---KH 182

Query: 371 DVKLACKYFLVAANAGHQKA--FYQLA-KMFHTGVGLKKNLHMATALYKLVAERGPWSSL 427
             +     F         +A  FYQ   K+      L        A   L          
Sbjct: 183 LGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD---LGDRGAQGRACGNL---------- 229

Query: 428 SRWALESYLKGDVGKAFLLYSR---MA-ELGYEVAQSNA------AWI-LDKYGEGSMCM 476
                  YL GD   A   +     +A E G   A+  A      + I L ++ +     
Sbjct: 230 ---GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA---- 282

Query: 477 GESGFCTDAERHQCAHSLWWQASEQGNEHAALL-IGDAYYYGRGTQRDYERAAEAYMHAR 535
                   AE ++   +L  +  E+  E  +   +G+ Y        ++  A E +    
Sbjct: 283 --------AEHYKRTLALAVELGEREVEAQSCYSLGNTYT----LLHEFNTAIEYHNRHL 330

Query: 536 S--------QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV 573
           +           A+A ++LG  H    G       A +Y +Q L++
Sbjct: 331 AIAQELGDRIGEARACWSLGNAHSA-IG---GHERALKYAEQHLQL 372

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 65/379 (17%), Positives = 121/379 (31%), Gaps = 90/379 (23%)

Query: 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKA------ADKGEPQSMEFLGEIYAR 291
            + +   +   G            D    + +F  A        K        LG  Y  
Sbjct: 5   MEASCLELALEGERLCK-----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY 59

Query: 292 GAGVERNYTKALEWLTHA--ARQQLY------SAYNGIGYLYVKGYGVEKKNYTKAKEYF 343
                 +Y KALE+  H     + +        A   +G            N+ +A    
Sbjct: 60  ----LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-----VLGNFDEAIVCC 110

Query: 344 EKAAD-NEEAGGH-------YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLA 395
           ++  D + E           YNLG +Y+     K           V       +   Q A
Sbjct: 111 QRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEEVRDALQAA 166

Query: 396 KMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSR---MA- 451
             F+     ++NL + TAL    A+     +        YL G+   A + + +   +A 
Sbjct: 167 VDFY-----EENLSLVTALGDRAAQG---RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218

Query: 452 ELGYEVAQSNA------AWI-LDKYGEGSMCMGESGFCTDAER-HQCAHSLWWQASEQGN 503
           E G + A+  A      A+I L ++               A   ++    L  Q  ++  
Sbjct: 219 EFGDKAAERRAYSNLGNAYIFLGEFET-------------ASEYYKKTLLLARQLKDRAV 265

Query: 504 EHAALL-IGDAYYYGRGTQRDYERAAEAYMHARS--------QSNAQAMFNLGYMHEHGQ 554
           E  +   +G+ Y       +DYE+A + ++   +            +A ++LG  +    
Sbjct: 266 EAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA-L 320

Query: 555 GLPLDLHLAKRYYDQALEV 573
           G   +   A  + ++ LE+
Sbjct: 321 G---NHDQAMHFAEKHLEI 336

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.1 bits (125), Expect = 9e-08
 Identities = 30/205 (14%), Positives = 56/205 (27%), Gaps = 24/205 (11%)

Query: 167 AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED 226
               +    + +AV  + +   + ++   +   + V +   I +          K     
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70

Query: 227 DEAFQILEY--QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKA--ADKGEPQSM 282
           D+A+   +   Q    N   +              R     AL  + K    +     + 
Sbjct: 71  DKAYLFYKELLQKAPNNVDCLEACAEMQV-----CRGQEKDALRMYEKILQLEADNLAAN 125

Query: 283 EFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAK 340
            FLG  Y   A       K LE          ++  A    G   +         Y KA+
Sbjct: 126 IFLGNYYYLTAE---QEKKKLETDYKKLSSPTKMQYARYRDGLSKLF-----TTRYEKAR 177

Query: 341 EYFEKAAD---NEEAGGHYNLGVMY 362
              +K      + EA     L  + 
Sbjct: 178 NSLQKVILRFPSTEA--QKTLDKIL 200

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 63/381 (16%), Positives = 116/381 (30%), Gaps = 96/381 (25%)

Query: 240 GNAGAM--YKIGLFYYFGLRGLRRDRTKALMWFSKA------ADKGEPQSMEFLGEIYAR 291
           G+A  +     G            D    + +F  A        K        LG  Y  
Sbjct: 1   GSASCLELALEGERLCK-----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY 55

Query: 292 GAGVERNYTKALEWLTHA--ARQQLY------SAYNGIGYLYVKGYGVEKKNYTKAKEYF 343
                 +Y KALE+  H     + +        A   +G            N+ +A    
Sbjct: 56  ----LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-----VLGNFDEAIVCC 106

Query: 344 EKAAD-NEEAGGH-------YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLA 395
           ++  D + E           YNLG +Y+     K                   +   Q A
Sbjct: 107 QRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDVRNALQAA 162

Query: 396 KMFHTGVGLKKNLHMATAL--YKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSR---- 449
              +     ++NL + TAL             +        YL G+   A + + +    
Sbjct: 163 VDLY-----EENLSLVTALGDRAAQG-----RAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212

Query: 450 MAELGYEVAQSNA------AWI-LDKYGEGSMCMGESGFCTDAER-HQCAHSLWWQASEQ 501
             E G + A+  A      A+I L ++               A   ++    L  Q  ++
Sbjct: 213 AKEFGDKAAERRAYSNLGNAYIFLGEFET-------------ASEYYKKTLLLARQLKDR 259

Query: 502 GNEHAALL-IGDAYYYGRGTQRDYERAAEAYMHARS--------QSNAQAMFNLGYMHEH 552
             E  +   +G+ Y       +DYE+A + ++   +            +A ++LG  +  
Sbjct: 260 AVEAQSCYSLGNTYT----LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 315

Query: 553 GQGLPLDLHLAKRYYDQALEV 573
             G   +   A  + ++ LE+
Sbjct: 316 -LG---NHDQAMHFAEKHLEI 332

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 28/289 (9%), Positives = 72/289 (24%), Gaps = 32/289 (11%)

Query: 298 NYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA--ADNEEAG 353
           N+ +A+++  +A          Y+ I   Y+        +  K  E+  KA     + + 
Sbjct: 40  NFNEAIKYYQYAIELDPNEPVFYSNISACYIS-----TGDLEKVIEFTTKALEIKPDHSK 94

Query: 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMA 411
                            +   A     V +  G     +   + +       +K      
Sbjct: 95  ALLRRASANES----LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENL 150

Query: 412 TALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGE 471
           +      ++  P ++        +       +    S           S+A   L    +
Sbjct: 151 SKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT--AYALLSDALQRLYSATD 208

Query: 472 GSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGT----QRDYERA 527
               +         + +    S            A      A  Y  G     + +   A
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA-----LALCY-TGIFHFLKNNLLDA 262

Query: 528 AEAYMHA-RSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP 575
                 +        +   L       +    +     +++ +A++++P
Sbjct: 263 QVLLQESINLHPTPNSYIFLALTLAD-KE---NSQEFFKFFQKAVDLNP 307

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 61/449 (13%), Positives = 123/449 (27%), Gaps = 66/449 (14%)

Query: 152 HFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNG 211
             +    N     A     L ++++ +A+K+  E              S           
Sbjct: 115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174

Query: 212 AEENKGALRKSRGEDDEAF----QILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKAL 267
               + +   +    D A+      L+      + G +    L                L
Sbjct: 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS-----TDMYHSLL 229

Query: 268 MWFSKAADKGEPQSMEF--LGEIYARGAGVERNYTKALEWLTHAARQQL-YSAYNGIGYL 324
              +      E  ++     G  +      + N   A   L  +       ++Y  +   
Sbjct: 230 SANTVDDPLRENAALALCYTGIFHFL----KNNLLDAQVLLQESINLHPTPNSYIFLALT 285

Query: 325 YVKGYGVEKKNYTKAKEYFEKA----ADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFL 380
                  +K+N  +  ++F+KA     +      +Y+ G MY+      +D K A + F 
Sbjct: 286 LA-----DKENSQEFFKFFQKAVDLNPEYPPT--YYHRGQMYFI----LQDYKNAKEDFQ 334

Query: 381 VAA--NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSS--LSRWALESYL 436
            A   N  +   + QLA + +     +     + A +     + P      + +A     
Sbjct: 335 KAQSLNPENVYPYIQLACLLY----KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD 390

Query: 437 KGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494
           +GD   A   Y     L    E        ++ K    +    +     D E+   A  L
Sbjct: 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450

Query: 495 WWQASEQGNEHAALLIGDAYYYGRGT----QRDYERAAEAYMHARS--QSNAQAMFNLGY 548
             +A E                G           + A E +  +    ++  + +    +
Sbjct: 451 LTKACELDPRSE------QAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504

Query: 549 MHEHGQGLPLDLHLAKRYYDQALEVDPAA 577
                         AK    + L  DP  
Sbjct: 505 A-----------EAAK--IQKRLRADPII 520

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 43/287 (14%), Positives = 77/287 (26%), Gaps = 33/287 (11%)

Query: 309 AARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA----DNEEAGGHYNLGVMYYK 364
             R +        G+  +K          +AK  FEKA      N E      L +  Y+
Sbjct: 130 PYRIESPELDCEEGWTRLK---CGGNQNERAKVCFEKALEKKPKNPEF--TSGLAIASYR 184

Query: 365 GIGVKRDVKLACKYF--LVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422
            +      + A       +  N  +Q     LA   H      +       L +   E+ 
Sbjct: 185 -LDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243

Query: 423 P--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGE 478
           P     L   A     K +  KA  L  +  E                       M + E
Sbjct: 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE 303

Query: 479 S---GFCTDAERHQCAHSLWWQASEQGNEHAALL--IGDAYYYGRGTQRDYERAAEAYMH 533
           +   G     E    A +   +A E  +    +   +   +         YE A   +  
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL----ADQYEEAEYYFQK 359

Query: 534 ARSQ----SNAQAM-FNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP 575
             S+       Q +    G    +          A  ++ + ++++ 
Sbjct: 360 EFSKELTPVAKQLLHLRYGNFQLYQMK---CEDKAIHHFIEGVKINQ 403

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.0 bits (114), Expect = 7e-06
 Identities = 55/436 (12%), Positives = 121/436 (27%), Gaps = 59/436 (13%)

Query: 167 AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED 226
           AY    +  ++ A++   +  E+         +   +     +     + G L   +   
Sbjct: 58  AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117

Query: 227 DEAFQILEYQAQKGNAGAMYKIGLFYYFG---LRGLRRDRTKALMWFSKAADKGEPQSME 283
           D+   + E   +  +   +    L    G   L+       +A + F KA +K +P++ E
Sbjct: 118 DKVKHVCE---KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-KPKNPE 173

Query: 284 F---LGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTK 338
           F   L     R          A++ L  A R           +     K    E +   +
Sbjct: 174 FTSGLAIASYRLDNWPP-SQNAIDPLRQAIRLNPDNQYLKVLLALKLHK-MREEGEEEGE 231

Query: 339 AKEYFEKA--ADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA--ANAGHQKAFYQL 394
            ++  E+A            +    Y +    K +   A +    A      +     Q+
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRR----KDEPDKAIELLKKALEYIPNNAYLHCQI 287

Query: 395 AKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELG 454
                               Y+    +      +    +  L   +G A     +  E  
Sbjct: 288 GC-----------------CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN 330

Query: 455 --YEVAQSNAAWILDKYG-----EGSMCMGESGFCTDAERHQCAHSL-WWQASEQGNEHA 506
                  S  A +          E       S   T   +         +Q  +   E  
Sbjct: 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDK 390

Query: 507 A-------LLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLD 559
           A       + I          +   ++ A+  +  ++ ++++A+  L ++ E        
Sbjct: 391 AIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLS-KNGADSEALHVLAFLQEL-NE---K 445

Query: 560 LHLAKRYYDQALEVDP 575
           +  A    ++ LE   
Sbjct: 446 MQQADEDSERGLESGS 461

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 31/168 (18%)

Query: 215 NKGALRKSRGEDDEAFQILE--YQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSK 272
             G+   ++G    A Q +E   +    +    Y++G  YY+      ++  KA   F K
Sbjct: 113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-----NKEYVKADSSFVK 167

Query: 273 AADKGEPQSME---FLGEIYARGAGVER------NYTKALEWLTHAARQ---QLYSAYNG 320
             +  +P       +     A      +       Y K +E       +   +L  A   
Sbjct: 168 VLEL-KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEY 226

Query: 321 IGYLYVKGYGVEKKNYTKAKEYFEKAA----DNEEAGGHYNLGVMYYK 364
           I Y Y        ++  KA   ++        N++A     L +    
Sbjct: 227 IAYYYT-----INRDKVKADAAWKNILALDPTNKKA--IDGLKMKLEH 267

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 35/173 (20%)

Query: 228 EAFQILEY-QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLG 286
           EA + L +       A   +K+   YY       +    ++    +A D  +   +  + 
Sbjct: 126 EAEKELPFVSDDIEKAEFHFKVAEAYYH-----MKQTHVSMYHILQALDIYQNHPLYSIR 180

Query: 287 EIYARG--AGV---ERNYTKALEWLTHA--------ARQQLYSAYNGIGYLYVKGYGVEK 333
            I +    AG     ++Y KAL  L  A          + +  +   I   Y +      
Sbjct: 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR-----S 235

Query: 334 KNYTKAKEYFEKAADNEEAGGH-------YNLGVMYYKGIGVKRDVKLACKYF 379
            +   A E+F+KAA               + L     K        + A ++ 
Sbjct: 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK----AGQTQKAFQFI 284

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 44/328 (13%), Positives = 95/328 (28%), Gaps = 59/328 (17%)

Query: 85  INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNK 144
           +   + + +  +    T G+   + E    +E+   +     +    F  GM    ++  
Sbjct: 58  MCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEY 117

Query: 145 GKAFLYHHFA----------AEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF 194
            +A  Y+  A           E      K+A AY +++Q     ++    +  +I  N  
Sbjct: 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ--THVSMYHILQALDIYQNHP 175

Query: 195 LISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILE--------YQAQKGNAGAMY 246
           L S  +     I+                   D+A   LE         Q  +  A ++ 
Sbjct: 176 LYSIRT-----IQSLF----VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226

Query: 247 KIGLFYYFGLRGLRRDRTKALMWFSKA-------ADKGEPQSMEFLGEIYARGAGVERNY 299
            I   Y         D   A+  F KA            P+ +  L     +        
Sbjct: 227 NIANSYD-----RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK----AGQT 277

Query: 300 TKALEWLTHAAR-------QQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE- 351
            KA +++            +     +  +  +Y +    +++       YFEK   +   
Sbjct: 278 QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV--DERKIHDLLSYFEKKNLHAYI 335

Query: 352 AGGHYNLGVMYYKGIGVKRDVKLACKYF 379
                +   ++          + A  ++
Sbjct: 336 EACARSAAAVFES----SCHFEQAAAFY 359

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 27/219 (12%), Positives = 60/219 (27%), Gaps = 36/219 (16%)

Query: 143 NKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV 202
            +      +H       IQS   +A  Y     +DKA+       E+A++     ++   
Sbjct: 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI----QNDRF 220

Query: 203 IEPIRIHNGAEENKGALRKSRGEDDEAF-------QILEYQAQKGNAGAMYKIGLFYYFG 255
           I           N        G+D  A        ++   +        ++ +       
Sbjct: 221 I--AISLL----NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK- 273

Query: 256 LRGLRRDRTKALMWFSKA-------ADKGEPQSMEFLGEIYARGAGVERNYTKALEWL-T 307
                    KA  +  +        + K   +   FL  +Y +    ER     L +   
Sbjct: 274 ----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVY-KETVDERKIHDLLSYFEK 328

Query: 308 HAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA 346
                 + +       ++         ++ +A  ++ K 
Sbjct: 329 KNLHAYIEACARSAAAVFES-----SCHFEQAAAFYRKV 362

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 53/428 (12%), Positives = 111/428 (25%), Gaps = 76/428 (17%)

Query: 169 TYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDE 228
            Y      D+A + Y E   +    +                 A +   +      +++ 
Sbjct: 209 VYTNLSNFDRAKECYKEALMVDAKCY----------------EAFDQLVSNHLLTADEEW 252

Query: 229 AFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEF---L 285
              +    +      A +   L+     +    D  +    +  + +    +S +     
Sbjct: 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING-LEKSSDLLLCK 311

Query: 286 GEIYARGAGVERNYTKALEWLTHAARQQLYS--AYNGIGYLYVKGYGVEKKNYTKAKEYF 343
            +           +   L   T       Y+   Y             E     K     
Sbjct: 312 ADTLFV----RSRFIDVLAITTKILEIDPYNLDVYPLHLASLH-----ESGEKNKLYLIS 362

Query: 344 EKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA--NAGHQKAFYQLAKMFH 399
               D   E+A     +G+ Y         +  A +YF  ++  +     A+   A  F 
Sbjct: 363 NDLVDRHPEKAVTWLAVGIYYLC----VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA 418

Query: 400 TGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL- 453
                +     A + Y   A         +  L    ++    G++  A         L 
Sbjct: 419 I----EGEHDQAISAYTTAARLFQGTHLPYLFL---GMQHMQLGNILLANEYLQSSYALF 471

Query: 454 -GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH-QCAHSLWWQASEQGNEHAALL-- 509
               +  +    +     +             A  H Q A  L  +        AA    
Sbjct: 472 QYDPLLLNELGVVAFNKSD----------MQTAINHFQNALLLVKKTQSNEKPWAATWAN 521

Query: 510 IGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYY 567
           +G AY       + Y+ A +A         ++A     +  ++ H +       LA  + 
Sbjct: 522 LGHAYR----KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH-KK---IPGLAITHL 573

Query: 568 DQALEVDP 575
            ++L + P
Sbjct: 574 HESLAISP 581

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 57/446 (12%), Positives = 126/446 (28%), Gaps = 52/446 (11%)

Query: 148 FLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIR 207
           F+        GN      +A  Y     + +A  L  +      +S      +  +  + 
Sbjct: 105 FVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY 164

Query: 208 IHNGAEENKGALRKSRGEDDEAFQILEY-QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKA 266
              GA    G     R ++  A ++L      K  A   Y  G  Y         +  +A
Sbjct: 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT-----NLSNFDRA 219

Query: 267 LMWFSKA--ADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYL 324
              + +A   D    ++ + L   +   A  E +    L + T++     +     +  L
Sbjct: 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279

Query: 325 YVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYF--LVA 382
               +  E +              + +           +     +            ++ 
Sbjct: 280 NKTSHEDELRRAEDYLSSINGLEKSSDL--LLCKADTLFV----RSRFIDVLAITTKILE 333

Query: 383 ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLK--GDV 440
            +  +   +       H         +    +   + +R P  +++  A+  Y      +
Sbjct: 334 IDPYNLDVYPLHLASLHE----SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389

Query: 441 GKAFLLYSRMAELGYEVAQSN--AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA 498
            +A   +S+ + +           AWI             S        H  A S +  A
Sbjct: 390 SEARRYFSKSSTM-----DPQFGPAWIG---------FAHS--FAIEGEHDQAISAYTTA 433

Query: 499 SE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQ 554
           +   QG     L +G  +        +   A E    + +  Q +   +  LG +  + +
Sbjct: 434 ARLFQGTHLPYLFLGMQHMQ----LGNILLANEYLQSSYALFQYDPLLLNELGVVAFN-K 488

Query: 555 GLPLDLHLAKRYYDQALEVDPAAKLP 580
               D+  A  ++  AL +    +  
Sbjct: 489 S---DMQTAINHFQNALLLVKKTQSN 511

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 41/300 (13%), Positives = 75/300 (25%), Gaps = 57/300 (19%)

Query: 298 NYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG 353
           ++    +  +    +     S         V     E     +      K  D       
Sbjct: 37  DFKMCYKLTSVVMEKDPFHASCLPVHIGTLV-----ELNKANELFYLSHKLVDLYPSNPV 91

Query: 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAA--NAGHQKAFYQLAKMFHTGVGLKKNLHMA 411
             + +G  Y     V    + A +Y   A      +  A+      F      +     A
Sbjct: 92  SWFAVGCYYLM---VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV----ESEHDQA 144

Query: 412 TALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464
            A Y   A+           +    LE  L  +   A   +S+   +             
Sbjct: 145 MAAYFTAAQLMKGCHLPMLYI---GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGV 201

Query: 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAY---YYGRGT- 520
           +  + G                  + A   +  A E+       +  D +       G  
Sbjct: 202 VAFQNG----------------EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245

Query: 521 ---QRDYERAAEAYMHARSQS--NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP 575
               + Y  A + +  A      NA     +GY+H    G   +   A  Y+  AL +  
Sbjct: 246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH-SLMG---NFENAVDYFHTALGLRR 301

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 42/245 (17%), Positives = 79/245 (32%), Gaps = 50/245 (20%)

Query: 168 YTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRI----HNGAEENKGALRKSR 223
           Y Y+R+     A  L  E+ +       + +D  +     +    HN   E    L K R
Sbjct: 20  YMYIRRFSIPDAEYLRREIKQELDQ---MEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMR 76

Query: 224 GEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGL----RRDRTKALMWFSKAAD---- 275
            E+      L           +  +  +Y+   RG+    +R+   A+ +F KA      
Sbjct: 77  IEEQPRLSDL-LLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIF 135

Query: 276 -KGEPQSMEF---LGEIYARGAGVERNYTKALEWLTHA---------ARQQLYSAYNGIG 322
            K   +  EF   + E Y       +    ++++   A            +L   ++   
Sbjct: 136 VKDRIEKAEFFFKMSESYYY----MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191

Query: 323 YLYVKGYGVEKKNYTKAKEYFEKA--------ADNEEAGGHYNLGVMYYKGIGVKRDVKL 374
             +     ++ K Y  A  +F+KA                 YN+G+        +   + 
Sbjct: 192 TNF-----LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYED 242

Query: 375 ACKYF 379
           A  YF
Sbjct: 243 AIPYF 247

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 44/178 (24%)

Query: 228 EAFQILEYQA-QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD---------KG 277
           +A   L +   +   A   +K+   YY       +    ++ +  +A +           
Sbjct: 128 KAESKLIFVKDRIEKAEFFFKMSESYY-----YMKQTYFSMDYARQAYEIYKEHEAYNIR 182

Query: 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHA--------ARQQLYSAYNGIGYLYVKGY 329
             Q        +       + Y  A+     A          Q +      IG       
Sbjct: 183 LLQCHSLFATNFLD----LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN--- 235

Query: 330 GVEKKNYTKAKEYFEKAAD-NEEAGGH-------YNLGVMYYKGIGVKRDVKLACKYF 379
              +  Y  A  YF++A    EE+          + +  ++YK       +  A +Y 
Sbjct: 236 --SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK----LGKIDKAHEYH 287

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	672
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	100.0
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	100.0
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	100.0
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.97
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.95
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.94
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.93
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.85
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.83
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.82
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.82
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.81
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.8
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.79
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.79
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.79
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.79
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.79
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.79
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.78
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.78
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.77
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.77
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.77
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.76
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.76
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.76
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.76
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.74
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.73
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.72
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.71
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.7
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.7
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.7
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.69
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.68
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.66
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.66
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.66
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.64
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.63
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.63
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.62
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.61
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.61
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.6
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.6
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.59
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.57
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.56
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.56
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.55
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.54
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.52
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.52
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.51
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.51
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.51
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.49
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.48
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.45
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.44
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.42
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.4
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.39
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.38
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.37
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.37
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.37
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.34
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.26
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.21
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.21
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.21
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.2
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.19
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.19
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.18
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.17
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.17
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.17
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.14
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.14
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.12
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.12
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.1
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.06
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.03
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.03
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.03
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.01
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.01
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.99
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.97
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.96
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.95
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.95
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.94
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.93
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.92
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.92
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.91
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.9
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.88
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.88
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.87
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.86
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.85
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.85
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.85
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.84
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.81
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.81
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.8
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.8
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.8
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.8
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.79
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.77
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.77
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.77
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.77
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.76
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.74
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.74
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.74
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.74
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.72
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.71
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.71
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.7
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.69
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.69
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.68
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.67
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.67
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.66
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.65
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.65
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.65
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.64
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.63
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.63
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.63
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.63
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.62
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.61
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.59
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.58
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.54
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.54
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.53
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.5
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.5
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.49
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.46
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.45
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.44
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.39
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.37
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.36
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.29
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.22
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.21
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.18
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.16
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.15
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.06
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.05
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.0
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.99
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.89
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.75
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.72
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.67
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.66
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.59
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.59
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.59
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.55
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.53
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.45
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.44
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.41
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.4
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.35
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.34
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.13
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.09
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.04
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.63
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.6
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.03
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.86
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.59
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.55
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.55
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.0
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.68
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.44
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.01
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	91.66
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	90.76
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	90.14
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	88.03
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	85.76
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	85.02
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	84.52
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	83.45
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	82.36
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	81.01

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=100.00  E-value=1.9e-50  Score=444.29  Aligned_cols=404  Identities=28%  Similarity=0.408  Sum_probs=381.8

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----cCCHHHHHHHH
Q 005877          108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR----QDMHDKAVKLY  183 (672)
Q Consensus       108 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~----~~~~~~A~~~y  183 (672)
                      ...++..++++++.+++++++.||.+|..|.++.+|+++|+.+|+++++.|++.+++.||.+|..    .+++++|+.+|
T Consensus        23 ~~~~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~  102 (490)
T 2xm6_A           23 GNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWY  102 (490)
T ss_dssp             --CCHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            45668889999999999999999999999999999999999999999999999999999999987    66666666666


Q ss_pred             HHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCH
Q 005877          184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDR  263 (672)
Q Consensus       184 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~  263 (672)
                      +++                                                  ++.+++.+++.||.+|..+ .|+++|+
T Consensus       103 ~~a--------------------------------------------------~~~~~~~a~~~Lg~~y~~g-~g~~~~~  131 (490)
T 2xm6_A          103 KKA--------------------------------------------------ALKGLPQAQQNLGVMYHEG-NGVKVDK  131 (490)
T ss_dssp             HHH--------------------------------------------------HHTTCHHHHHHHHHHHHHT-SSSCCCH
T ss_pred             HHH--------------------------------------------------HHCCCHHHHHHHHHHHHcC-CCCCCCH
Confidence            654                                                  5668999999999999998 5888999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Q 005877          264 TKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYF  343 (672)
Q Consensus       264 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~  343 (672)
                      ++|+.+|+++++.+++.+++.||.+|..|.|+++|+++|+.+|+++++.+++.+++.||.+|..|.|+.. ++++|+.+|
T Consensus       132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~  210 (490)
T 2xm6_A          132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVER-NDAISAQWY  210 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCc-CHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998866 999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC
Q 005877          344 EKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP  423 (672)
Q Consensus       344 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~  423 (672)
                      +++++.+++.++++||.+|..|.|+.+|+++|+.+|+++++.+++.++++||.+|..|.++.+|+++|+.+|+++++.++
T Consensus       211 ~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~  290 (490)
T 2xm6_A          211 RKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN  290 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH
Q 005877          424 WSSLSRWALESYLK-----GDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA  498 (672)
Q Consensus       424 ~~a~~~lg~~~~~~-----g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  498 (672)
                      +.+++.+|..+...     +++++|+.+|+++++.+++.+++++|.+|...|.             .+++++|+.+|+++
T Consensus       291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~-------------~~~~~~A~~~~~~a  357 (490)
T 2xm6_A          291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGS-------------EEEHKKAVEWFRKA  357 (490)
T ss_dssp             HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCC-------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------cccHHHHHHHHHHH
Confidence            99999999999988     8999999999999999999999999999987322             67999999999999


Q ss_pred             HhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          499 SEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       499 ~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      ++.+++.++++||.+|..|.|+.+|+++|++||++|++.+++.++++||.+|..|.|+.+|+++|+.||++|++.+|+
T Consensus       358 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          358 AAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999865

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=100.00  E-value=1.6e-49  Score=436.98  Aligned_cols=429  Identities=24%  Similarity=0.348  Sum_probs=389.1

Q ss_pred             cccccCCCCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHH
Q 005877           73 SPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHH  152 (672)
Q Consensus        73 ~~~~~~~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~  152 (672)
                      ...++++++++++.+++.+|..++.   ..+..+++++|+.+|+++++.+++.+++.||.+|..|.|+.+|+++|+.+|+
T Consensus        27 ~~~~~~~a~~g~~~a~~~lg~~y~~---g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  103 (490)
T 2xm6_A           27 LEQLKQKAESGEAKAQLELGYRYFQ---GNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK  103 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH---TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHc---CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            3445556778889999999998774   2345789999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHH
Q 005877          153 FAAEGGNIQSKMAVAYTYLR----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDE  228 (672)
Q Consensus       153 ~A~~~~~~~a~~~Lg~~y~~----~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~  228 (672)
                      ++++.|++.+++.||.+|..    .+++++|+.+|++                                           
T Consensus       104 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~-------------------------------------------  140 (490)
T 2xm6_A          104 KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRL-------------------------------------------  140 (490)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-------------------------------------------
T ss_pred             HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-------------------------------------------
Confidence            99999999999999999987    5566666665555                                           


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 005877          229 AFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTH  308 (672)
Q Consensus       229 Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~  308 (672)
                             +++.+++.+++.||.+|..+ .++++|+++|+++|+++++.+++.+++.||.+|..|.|+.+++++|+.||++
T Consensus       141 -------a~~~~~~~a~~~Lg~~y~~g-~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~  212 (490)
T 2xm6_A          141 -------AAEQGRDSGQQSMGDAYFEG-DGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRK  212 (490)
T ss_dssp             -------HHHTTCHHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             -------HHHCCCHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence                   45668999999999999988 5888999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCH
Q 005877          309 AARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ  388 (672)
Q Consensus       309 a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~  388 (672)
                      +++.+++.+++.||.+|..|.|+.. ++++|+.+|+++++.+++.++++||.+|..|.++.+|+++|+.+|+++++.+++
T Consensus       213 a~~~~~~~a~~~lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~  291 (490)
T 2xm6_A          213 SATSGDELGQLHLADMYYFGIGVTQ-DYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS  291 (490)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred             HHHCCCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            9999999999999999999988765 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcC-CCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005877          389 KAFYQLAKMFHTG-VGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG---DVGKAFLLYSRMAELGYEVAQSNAAW  464 (672)
Q Consensus       389 ~a~~~L~~~y~~g-~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~g~~~a~~nla~  464 (672)
                      .++++||.+|..| .++.+|+++|+.+|+++++.+++.+++++|..+...|   ++++|+.+|+++++.+++.+++++|.
T Consensus       292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~  371 (490)
T 2xm6_A          292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGN  371 (490)
T ss_dssp             HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999998 7889999999999999999999999999999999877   89999999999999999999999999


Q ss_pred             HHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-----C
Q 005877          465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS-----N  539 (672)
Q Consensus       465 ~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~  539 (672)
                      +|....         +   ..+++++|+.+|+++++++++.++++||.+|..|.|+.+|+++|+.||++|++.+     +
T Consensus       372 ~y~~g~---------g---~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~  439 (490)
T 2xm6_A          372 ALLQGK---------G---VKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT  439 (490)
T ss_dssp             HHHHTS---------S---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHcCC---------C---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC
Confidence            997621         1   1568999999999999999999999999999999999999999999999999876     8


Q ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 005877          540 AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQA  570 (672)
Q Consensus       540 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  570 (672)
                      +.+.++||.++...  ..+..+.|.++++++
T Consensus       440 ~~a~~~l~~~~~~~--~~~a~~~a~~~~~~~  468 (490)
T 2xm6_A          440 ENRNITEKKLTAKQ--LQQAELLSQQYIEKY  468 (490)
T ss_dssp             HHHHHHHTTSCHHH--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHhH--HHHHHHHHHHHHHHH
Confidence            99999999987641  123344466777665

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=100.00  E-value=6.4e-43  Score=379.37  Aligned_cols=331  Identities=16%  Similarity=0.081  Sum_probs=269.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 005877          227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWL  306 (672)
Q Consensus       227 ~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~  306 (672)
                      ++|+.+|+++++. ++.+++.||.++...+.++++|+++|+.+|+++++.+++.+++.||.+|..|.++..+ .++..++
T Consensus        55 ~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~-~~a~~~~  132 (452)
T 3e4b_A           55 KQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPN-VNAQQQI  132 (452)
T ss_dssp             -----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTT-CCHHHHH
T ss_pred             HHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCC-HHHHHHH
Confidence            4455555555555 7778888888666665566778889999999998888888899999998888776666 7788888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC
Q 005877          307 THAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG  386 (672)
Q Consensus       307 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  386 (672)
                      .++.+.+++.+++.||.+|..+.++++ +.+++..+++ ++..+++.++++||.+|.. .|+.+++++|+.+|+++++.+
T Consensus       133 ~~a~~~g~~~a~~~Lg~~y~~~~~~~~-~~~~a~~~~~-~a~~~~~~a~~~Lg~~~~~-~g~~~~~~~A~~~~~~aa~~g  209 (452)
T 3e4b_A          133 SQWQAAGYPEAGLAQVLLYRTQGTYDQ-HLDDVERICK-AALNTTDICYVELATVYQK-KQQPEQQAELLKQMEAGVSRG  209 (452)
T ss_dssp             HHHHHHTCTTHHHHHHHHHHHHTCGGG-GHHHHHHHHH-HHTTTCTTHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCCccc-CHHHHHHHHH-HHHcCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHHCC
Confidence            888888888899999999988766655 7777555554 4455667789999999888 555568999999999999888


Q ss_pred             CHHHH--HHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCHHHHHH
Q 005877          387 HQKAF--YQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALE-S--YLKGDVGKAFLLYSRMAELGYEVAQSN  461 (672)
Q Consensus       387 ~~~a~--~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~-~--~~~g~~~~A~~~~~~a~~~g~~~a~~n  461 (672)
                      +..+.  ++||.+|..|.++.+|+++|+.+|++++ .+++.+++++|.. +  ...+|+++|+.+|+++++.|++.++++
T Consensus       210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~  288 (452)
T 3e4b_A          210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELL  288 (452)
T ss_dssp             CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            77777  8899999888888899999999999988 8888899999988 4  467899999999999999999999999


Q ss_pred             HHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 005877          462 AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQ  541 (672)
Q Consensus       462 la~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  541 (672)
                      +|.+|.. |.        ++   ..++++|+.+|++++ ++++.++++||.+|..|.|+.+|+++|+.||++|++.+++.
T Consensus       289 Lg~~y~~-G~--------g~---~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~  355 (452)
T 3e4b_A          289 LGKLYYE-GK--------WV---PADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS  355 (452)
T ss_dssp             HHHHHHH-CS--------SS---CCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT
T ss_pred             HHHHHHc-CC--------CC---CCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH
Confidence            9999975 21        11   458999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          542 AMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       542 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      ++++||.+|..|.|+++|..+|+.||++|.+.++.
T Consensus       356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~  390 (452)
T 3e4b_A          356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP  390 (452)
T ss_dssp             HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence            99999999999999999999999999999998864

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=100.00  E-value=2.5e-41  Score=366.89  Aligned_cols=403  Identities=13%  Similarity=0.024  Sum_probs=303.7

Q ss_pred             HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005877           89 YYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAY  168 (672)
Q Consensus        89 ~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~  168 (672)
                      ..+|...+.       .+++++|+.+|+++++.+++++++.||.+|.. .|+..|.++|+.+|+++++. ++.+++.||.
T Consensus         7 ~~la~~~~~-------~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~-~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~   77 (452)
T 3e4b_A            7 QRLANEALK-------RGDTVTAQQNYQQLAELGYSEAQVGLADIQVG-TRDPAQIKQAEATYRAAADT-SPRAQARLGR   77 (452)
T ss_dssp             HHHHHHHHH-------HHHHHHHHHHHHHHHHHTCCTGGGTCC------------------------------CHHHHHH
T ss_pred             HHHHHHHHh-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHHHhC-CHHHHHHHHH
Confidence            345666554       58999999999999999999999999999966 56666779999999999988 9999999999


Q ss_pred             HHhccC-----CHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHH
Q 005877          169 TYLRQD-----MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAG  243 (672)
Q Consensus       169 ~y~~~~-----~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~  243 (672)
                      ++...+     ++++|+.                                                  +|+++++++++.
T Consensus        78 ~~~~~~~~~~~~~~~A~~--------------------------------------------------~~~~Aa~~g~~~  107 (452)
T 3e4b_A           78 LLAAKPGATEAEHHEAES--------------------------------------------------LLKKAFANGEGN  107 (452)
T ss_dssp             HHHTC--CCHHHHHHHHH--------------------------------------------------HHHHHHHTTCSS
T ss_pred             HHHhCCCCCCcCHHHHHH--------------------------------------------------HHHHHHHCCCHH
Confidence            655433     4444444                                                  455556677788


Q ss_pred             HHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005877          244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGY  323 (672)
Q Consensus       244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~  323 (672)
                      +++.||.+|..++ ++..+ .+++++++++.+.+++.+++.||.+|..|.++.++.+++..+++.+ ..+++.+++.||.
T Consensus       108 A~~~Lg~~y~~~~-~~~~~-~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a-~~~~~~a~~~Lg~  184 (452)
T 3e4b_A          108 TLIPLAMLYLQYP-HSFPN-VNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAA-LNTTDICYVELAT  184 (452)
T ss_dssp             CHHHHHHHHHHCG-GGCTT-CCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence            8888888888873 55556 7788888888888888888888888888877777888866655544 4566778888888


Q ss_pred             HHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHH--HHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 005877          324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH--YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTG  401 (672)
Q Consensus       324 ~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~--~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g  401 (672)
                      +|.. .|+.+ ++++|+.+|+++++.+++.+.  ++||.+|..|.++.+|+++|+.+|++++ .+++.++++||.+|..|
T Consensus       185 ~~~~-~g~~~-~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~  261 (452)
T 3e4b_A          185 VYQK-KQQPE-QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDF  261 (452)
T ss_dssp             HHHH-TTCHH-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHS
T ss_pred             HHHH-cCCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhC
Confidence            8886 44443 888888888888888877777  8888888888888888888888888888 88888888888886644


Q ss_pred             CCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccc
Q 005877          402 VGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG-----DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCM  476 (672)
Q Consensus       402 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~  476 (672)
                      .+ .+|+++|+.+|+++++.+++.+++++|..|. .|     |+++|+.+|++|+ +|++.+++++|.+|....      
T Consensus       262 ~~-~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~------  332 (452)
T 3e4b_A          262 PE-LGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGY------  332 (452)
T ss_dssp             GG-GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTT------
T ss_pred             CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCC------
Confidence            44 7888888888888888888888888888877 45     8899999999999 999999999999887611      


Q ss_pred             CCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005877          477 GESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGL  556 (672)
Q Consensus       477 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~  556 (672)
                         ++   ..++++|+.+|+++++++++.++++||.+|..|.|+.+|+.+|..||++|++.+++.+...|+.+...-  .
T Consensus       333 ---g~---~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~--~  404 (452)
T 3e4b_A          333 ---LG---KVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPL--T  404 (452)
T ss_dssp             ---TS---SCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTC--C
T ss_pred             ---CC---CcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--C
Confidence               11   458999999999999999999999999999999999999999999999999999999999999996441  2


Q ss_pred             CCCHHHHHHHHHHHHhc
Q 005877          557 PLDLHLAKRYYDQALEV  573 (672)
Q Consensus       557 ~~d~~~A~~~~~~A~~~  573 (672)
                      +.+..+|.+..++-...
T Consensus       405 ~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          405 PAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            45677777666655443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=5.3e-30  Score=272.17  Aligned_cols=354  Identities=17%  Similarity=0.101  Sum_probs=271.4

Q ss_pred             hhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHH
Q 005877          105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV  180 (672)
Q Consensus       105 ~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~  180 (672)
                      .|++++|+..++++  .+|+++.++..+|.++..    .+++++|..++++++.  +.++.++..+|.+|...|++++|+
T Consensus        12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~   87 (388)
T 1w3b_A           12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ----CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI   87 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            58888999888884  566888888888888888    7888899888888876  678888888999988888888888


Q ss_pred             HHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 005877          181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR  260 (672)
Q Consensus       181 ~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~  260 (672)
                      .+|+++++.                                                +++++.++..+|.++...     
T Consensus        88 ~~~~~al~~------------------------------------------------~p~~~~~~~~l~~~~~~~-----  114 (388)
T 1w3b_A           88 EHYRHALRL------------------------------------------------KPDFIDGYINLAAALVAA-----  114 (388)
T ss_dssp             HHHHHHHHH------------------------------------------------CTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHc------------------------------------------------CcchHHHHHHHHHHHHHc-----
Confidence            888887663                                                344666777777777766     


Q ss_pred             cCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCH
Q 005877          261 RDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNY  336 (672)
Q Consensus       261 ~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~  336 (672)
                      +++++|++.|+++++  ++++.++..+|.++..    .+++++|+..|+++++.  +++.++..+|.++..     .|++
T Consensus       115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~  185 (388)
T 1w3b_A          115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA----LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA-----QGEI  185 (388)
T ss_dssp             SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-----TTCH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCH
Confidence            377777777777765  3566777777777777    77778888887777754  466777777777774     5677


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHH
Q 005877          337 TKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMAT  412 (672)
Q Consensus       337 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~  412 (672)
                      ++|+.+|+++++.  +++.++.++|.++..    .+++++|+..|+++++.  +++.++.++|.++..    .+++++|+
T Consensus       186 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~  257 (388)
T 1w3b_A          186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKE----ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAI  257 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHH
Confidence            8888888877664  467777888888877    77788888888877663  456777788877776    77888888


Q ss_pred             HHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhH
Q 005877          413 ALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH  488 (672)
Q Consensus       413 ~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~  488 (672)
                      .+|+++++..|  +.++..+|..+...|++++|+..|+++++.  .+..++.+++.++..                .+++
T Consensus       258 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----------------~g~~  321 (388)
T 1w3b_A          258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE----------------QGNI  321 (388)
T ss_dssp             HHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----------------TTCH
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----------------cCCH
Confidence            88888877664  556777788888888888888888887654  466777777777766                6677


Q ss_pred             HHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHc
Q 005877          489 QCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEH  552 (672)
Q Consensus       489 ~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~  552 (672)
                      ++|+.+++++++  ++++.+++++|.+|.    ..+++++|+.+|+++++.  +++.++++||.++..
T Consensus       322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~  385 (388)
T 1w3b_A          322 EEAVRLYRKALEVFPEFAAAHSNLASVLQ----QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHHHHHHTTSCTTCHHHHHHHHHHHH----TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHH
Confidence            778777777655  455778888888888    788888888888888764  678888888888754

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=4.1e-29  Score=265.33  Aligned_cols=350  Identities=18%  Similarity=0.121  Sum_probs=306.0

Q ss_pred             HHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchh
Q 005877          130 LGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIR  207 (672)
Q Consensus       130 Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~  207 (672)
                      +|..+..    .+++++|+..++++..  ++++.++..+|.++...+++++|+.+++++++                   
T Consensus         5 ~a~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-------------------   61 (388)
T 1w3b_A            5 LAHREYQ----AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-------------------   61 (388)
T ss_dssp             HHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------
Confidence            4555555    6777777777777654  66777777777777777777777777766654                   


Q ss_pred             cccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHH
Q 005877          208 IHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFL  285 (672)
Q Consensus       208 l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~L  285 (672)
                                                   .++.++.+++.+|.+|...     +++++|+..|+++++  ++++.++..+
T Consensus        62 -----------------------------~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~l  107 (388)
T 1w3b_A           62 -----------------------------QNPLLAEAYSNLGNVYKER-----GQLQEAIEHYRHALRLKPDFIDGYINL  107 (388)
T ss_dssp             -----------------------------HCTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -----------------------------cCCCchHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHcCcchHHHHHHH
Confidence                                         2346889999999999988     499999999999986  5788999999


Q ss_pred             HHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 005877          286 GEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVM  361 (672)
Q Consensus       286 g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~  361 (672)
                      |.++..    .+++++|+..|+++++.  ++..+...+|.++..     .|++++|+.+|+++++.  +++.+++++|.+
T Consensus       108 ~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  178 (388)
T 1w3b_A          108 AAALVA----AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-----LGRLEEAKACYLKAIETQPNFAVAWSNLGCV  178 (388)
T ss_dssp             HHHHHH----HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999    99999999999999875  477889999999985     67999999999999876  578999999999


Q ss_pred             HHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhc
Q 005877          362 YYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLK  437 (672)
Q Consensus       362 y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~  437 (672)
                      +..    .+++++|+.+|+++++.  .+..++.++|.++..    .+++++|+..|+++++..|  +.++..+|.++...
T Consensus       179 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  250 (388)
T 1w3b_A          179 FNA----QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE----ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ  250 (388)
T ss_dssp             HHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc
Confidence            999    99999999999999874  578999999999998    8999999999999999875  56788999999999


Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHH
Q 005877          438 GDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDA  513 (672)
Q Consensus       438 g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~  513 (672)
                      |++++|+..|+++++.  .++.++.++|.++..                .+++++|+.+++++++  +.++.+++++|.+
T Consensus       251 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  314 (388)
T 1w3b_A          251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKE----------------KGSVAEAEDCYNTALRLCPTHADSLNNLANI  314 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----------------HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence            9999999999999876  478899999999988                7889999999998755  5678999999999


Q ss_pred             HHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          514 YYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       514 y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      +.    ..+++++|+.+|+++++.  +++.++++||.+|..    .|++++|+.+|+++++.+|+.
T Consensus       315 ~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~  372 (388)
T 1w3b_A          315 KR----EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             HH----TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHTTCTTC
T ss_pred             HH----HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCC
Confidence            99    899999999999999874  689999999999987    899999999999999999874

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.97  E-value=1.7e-29  Score=254.77  Aligned_cols=260  Identities=27%  Similarity=0.338  Sum_probs=184.7

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHH
Q 005877          238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSA  317 (672)
Q Consensus       238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a  317 (672)
                      +++++.+++.+|.+|...     +++++|+.+|+++++.+++.+++.||.+|..|.++.+++++|+.+|+++++.+++.+
T Consensus         2 ~~~~~~a~~~lg~~~~~~-----~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a   76 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKE-----KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNG   76 (273)
T ss_dssp             ---CHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCChHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHH
Confidence            456777888888887777     378888888888888777888888888888777777888888888888887777778


Q ss_pred             HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005877          318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM  397 (672)
Q Consensus       318 ~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~  397 (672)
                      ++.||.+|..|.++.. ++++|+.+|+++++.+++.+++++|.+|..|.++.+++++|+.+|+++++.+++.+++++|.+
T Consensus        77 ~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~  155 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQ-NTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSL  155 (273)
T ss_dssp             HHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCccc-CHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            8888888877766544 778888888888777777778888887777777777777777777777777777777777777


Q ss_pred             HHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005877          398 FHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYL----KGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGS  473 (672)
Q Consensus       398 y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~  473 (672)
                      |..|.++.+++++|+.+|+++++.+++.+++.+|.++..    .+++++|+.+|                          
T Consensus       156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~--------------------------  209 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY--------------------------  209 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH--------------------------
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH--------------------------
Confidence            777766677777777777766665555555555554444    44444444444                          


Q ss_pred             cccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005877          474 MCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHE  551 (672)
Q Consensus       474 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~  551 (672)
                                            +++++.+++.++++||.+|..|.|..+|+++|+++|++|++.++..+..+|+.+..
T Consensus       210 ----------------------~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~  265 (273)
T 1ouv_A          210 ----------------------SKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQLKI  265 (273)
T ss_dssp             ----------------------HHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHHTCCC
T ss_pred             ----------------------HHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                                  44444444555566677777777777777777777777777777777777766543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.97  E-value=2.6e-29  Score=253.29  Aligned_cols=257  Identities=26%  Similarity=0.353  Sum_probs=165.7

Q ss_pred             hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHhhhh
Q 005877          120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR----QDMHDKAVKLYAELAEIAVNSFL  195 (672)
Q Consensus       120 ~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~----~~~~~~A~~~y~~a~~~~~~~~~  195 (672)
                      +++++.+++.+|.+|..    .+++++|+.+|+++++++++.+++.||.+|..    .+++++|+.+|+++         
T Consensus         2 ~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a---------   68 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYK----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA---------   68 (273)
T ss_dssp             ---CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---------
T ss_pred             CCCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH---------
Confidence            45666666666666666    56666666666666666666666666666665    55555555555543         


Q ss_pred             ccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 005877          196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD  275 (672)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~  275 (672)
                                                               ++.+++.+++.||.+|..+ .++.+++++|+.+|+++++
T Consensus        69 -----------------------------------------~~~~~~~a~~~lg~~~~~g-~~~~~~~~~A~~~~~~a~~  106 (273)
T 1ouv_A           69 -----------------------------------------CDLNYSNGCHLLGNLYYSG-QGVSQNTNKALQYYSKACD  106 (273)
T ss_dssp             -----------------------------------------HHTTCHHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHH
T ss_pred             -----------------------------------------HHCCCHHHHHHHHHHHhCC-CCcccCHHHHHHHHHHHHH
Confidence                                                     2334566666666666664 3455666667777766666


Q ss_pred             cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHH
Q 005877          276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH  355 (672)
Q Consensus       276 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~  355 (672)
                      .+++.+++.||.+|..|.++.+++++|+.+|+++++.+++.+++.+|.+|..|.++. +++++|+.+|+++++.+++.++
T Consensus       107 ~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~a~  185 (273)
T 1ouv_A          107 LKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTP-KDLKKALASYDKACDLKDSPGC  185 (273)
T ss_dssp             TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence            666666666776666666666666677777766666666666666666666655443 3666666666666666666666


Q ss_pred             HHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005877          356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWAL  432 (672)
Q Consensus       356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~  432 (672)
                      +++|.+|..|.++.+++++|+.+|+++++.+++.++++||.+|..|.|+.+++++|+.+|+++++.++..+...+..
T Consensus       186 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~  262 (273)
T 1ouv_A          186 FNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQ  262 (273)
T ss_dssp             HHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666655555443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.8e-28  Score=275.63  Aligned_cols=429  Identities=13%  Similarity=0.038  Sum_probs=354.6

Q ss_pred             hhhHHHHHHHHHHHHhC-CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhccCCHHHHHHH
Q 005877          105 VRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKL  182 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-~~~~~a~~~Lg~~y~~~~~~~~A~~~  182 (672)
                      .+++++|+.+|++.... .+...++.+|.+|..    .+++++|+.+|+++.. +.++.+++.++.+|...|++++|+..
T Consensus        97 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  172 (597)
T 2xpi_A           97 QQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCC----TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNL  172 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccCchHHHHHHHHHHhhCCCchHHHHHHHHHHH----cCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHH
Confidence            58899999999995432 456788999999999    9999999999999864 67899999999999999999999999


Q ss_pred             HHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHh------
Q 005877          183 YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYF------  254 (672)
Q Consensus       183 y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~------  254 (672)
                      |++..........................+...++..+...|++++|+..|+++.+.  .++.++..++.++..      
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~  252 (597)
T 2xpi_A          173 LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEW  252 (597)
T ss_dssp             HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHH
T ss_pred             HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHH
Confidence            985321100000000000000000111234557899999999999999999998665  578888887764420      


Q ss_pred             ---------------------------cCCCcccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 005877          255 ---------------------------GLRGLRRDRTKALMWFSKAAD-KGEPQSMEFLGEIYARGAGVERNYTKALEWL  306 (672)
Q Consensus       255 ---------------------------~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~  306 (672)
                                                 ......+++++|++.|+++++ ..++.++..+|.+|..    .+++++|+.+|
T Consensus       253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~  328 (597)
T 2xpi_A          253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV----RSRFIDVLAIT  328 (597)
T ss_dssp             HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred             HHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH----hcCHHHHHHHH
Confidence                                       011234689999999999877 4789999999999999    99999999999


Q ss_pred             HHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH
Q 005877          307 THAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA  382 (672)
Q Consensus       307 ~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A  382 (672)
                      +++++.+  +..++..++.++..     .|++++|+..|+++++.  +++.+++.+|.+|..    .+++++|+.+|+++
T Consensus       329 ~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~  399 (597)
T 2xpi_A          329 TKILEIDPYNLDVYPLHLASLHE-----SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC----VNKISEARRYFSKS  399 (597)
T ss_dssp             HHHHHHCTTCCTTHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred             HHHHHcCcccHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----hccHHHHHHHHHHH
Confidence            9998753  67788899999985     67999999999999865  578999999999999    99999999999999


Q ss_pred             HHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCH
Q 005877          383 ANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYE  456 (672)
Q Consensus       383 ~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~  456 (672)
                      ++.  .+..+++.++.+|..    .+++++|+.+|+++++..+  ..++..+|..+...|++++|+.+|+++++.  .++
T Consensus       400 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  475 (597)
T 2xpi_A          400 STMDPQFGPAWIGFAHSFAI----EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP  475 (597)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCH
T ss_pred             HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            874  578899999999998    8999999999999998874  567889999999999999999999999765  578


Q ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC------CC---HHHHHHHHHHHHhCCCCCCCHHHH
Q 005877          457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ------GN---EHAALLIGDAYYYGRGTQRDYERA  527 (672)
Q Consensus       457 ~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~---~~a~~~lG~~y~~g~g~~~d~~~A  527 (672)
                      .++++++.++.+                .+++++|+.+++++.+.      .+   ..++..+|.+|.    ..+++++|
T Consensus       476 ~~~~~l~~~~~~----------------~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~----~~g~~~~A  535 (597)
T 2xpi_A          476 LLLNELGVVAFN----------------KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR----KLKMYDAA  535 (597)
T ss_dssp             HHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH----HTTCHHHH
T ss_pred             HHHHHHHHHHHH----------------hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH----HhcCHHHH
Confidence            899999999988                77899999999987653      21   678999999999    89999999


Q ss_pred             HHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          528 AEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       528 ~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      +.+|+++++  ++++.+++.||.+|..    .|++++|+++|+++++++|+..
T Consensus       536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~  584 (597)
T 2xpi_A          536 IDALNQGLLLSTNDANVHTAIALVYLH----KKIPGLAITHLHESLAISPNEI  584 (597)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCh
Confidence            999999976  4689999999999988    8999999999999999999863

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2.8e-28  Score=274.01  Aligned_cols=434  Identities=11%  Similarity=0.014  Sum_probs=356.4

Q ss_pred             ccCCCCCCcccccCCCCC-CCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH-hCCChHHHHHHHHHhhcCCcccC
Q 005877           65 ENLDPGSWSPVFEPSIDP-GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA-MEGDPHARSVLGFLYGMGMMRER  142 (672)
Q Consensus        65 ~~~~~~~a~~~~~~~~~~-~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~G~g~~~  142 (672)
                      ..+++++|+..|++.... +++...+.++..+..       .+++++|+..|+++. .+.++.+++.++.+|..    .+
T Consensus        96 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g  164 (597)
T 2xpi_A           96 MQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCC-------TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK----LY  164 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH----TT
T ss_pred             HccCchHHHHHHHHHHhhCCCchHHHHHHHHHHH-------cCcHHHHHHHHHHHhccccchhHHHHHHHHHHH----Hh
Confidence            346777777777766321 123455666666654       588999999999953 46889999999999999    99


Q ss_pred             CHHHHHHHHHHHHhCC------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccC----CC
Q 005877          143 NKGKAFLYHHFAAEGG------------------NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK----DS  200 (672)
Q Consensus       143 d~~~A~~~~~~A~~~~------------------~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~----~~  200 (672)
                      ++++|+..|++.....                  ++.+++.+|.+|...|++++|+.+|+++++..+.......    ..
T Consensus       165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  244 (597)
T 2xpi_A          165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH  244 (597)
T ss_dssp             CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred             hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhh
Confidence            9999999999633222                  4789999999999999999999999999987654221000    00


Q ss_pred             C---c----------cc-----chhcccCchhhhhHhhhccCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCccc
Q 005877          201 P---V----------IE-----PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ-KGNAGAMYKIGLFYYFGLRGLRR  261 (672)
Q Consensus       201 ~---~----------~~-----~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~-~~~~~a~~~Lg~~y~~~~~~~~~  261 (672)
                      .   .          ..     ...........++..+...|++++|+..|+++.+ +.++.++..+|.+|...     +
T Consensus       245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g  319 (597)
T 2xpi_A          245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR-----S  319 (597)
T ss_dssp             CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT-----T
T ss_pred             cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh-----c
Confidence            0   0          00     0000000112235567788999999999999766 36899999999999988     4


Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHH
Q 005877          262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYT  337 (672)
Q Consensus       262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~  337 (672)
                      ++++|+++|+++++.  .+..++..++.+|..    .+++++|+..++++++.  +++.+++.+|.+|..     .|+++
T Consensus       320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~  390 (597)
T 2xpi_A          320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHE----SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC-----VNKIS  390 (597)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH-----TTCHH
T ss_pred             CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-----hccHH
Confidence            999999999999864  578889999999998    99999999999999865  478899999999986     67999


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHH
Q 005877          338 KAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATA  413 (672)
Q Consensus       338 ~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~  413 (672)
                      +|+.+|+++++.  .++.+++.+|.+|..    .+++++|+++|+++.+.  .+..++..++.+|..    .+++++|+.
T Consensus       391 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~  462 (597)
T 2xpi_A          391 EARRYFSKSSTMDPQFGPAWIGFAHSFAI----EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ----LGNILLANE  462 (597)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----HTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCCHHHHHH
Confidence            999999999875  578999999999999    99999999999999875  467899999999998    899999999


Q ss_pred             HHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C---CHHHHHHHHHHHHHhCCCCcccCCCCCC
Q 005877          414 LYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL------G---YEVAQSNAAWILDKYGEGSMCMGESGFC  482 (672)
Q Consensus       414 ~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~------g---~~~a~~nla~~l~~~~~~~~~~~~~~~~  482 (672)
                      +|+++++..+  +.++..+|..+...|++++|+.+|+++++.      .   ...++.+++.++.+              
T Consensus       463 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~--------------  528 (597)
T 2xpi_A          463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK--------------  528 (597)
T ss_dssp             HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH--------------
Confidence            9999998764  667899999999999999999999999775      2   16789999999988              


Q ss_pred             CchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 005877          483 TDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHE  551 (672)
Q Consensus       483 ~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~  551 (672)
                        .+++++|+.+++++.+  ++++.+++.+|.+|.    ..+++++|+++|+++++  ++++.++..|+.+|.
T Consensus       529 --~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          529 --LKMYDAAIDALNQGLLLSTNDANVHTAIALVYL----HKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             --TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             --hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH----HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence              7789999999998754  567999999999999    89999999999999977  478999999999875

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-26  Score=255.13  Aligned_cols=393  Identities=16%  Similarity=0.096  Sum_probs=294.4

Q ss_pred             hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 005877          124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV  202 (672)
Q Consensus       124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~  202 (672)
                      +.+++.+|..|..    .+++++|+.+|++++. ..++.++..+|.+|...|++++|+.+|+++++..|...        
T Consensus         6 a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------   73 (514)
T 2gw1_A            6 ALALKDKGNQFFR----NKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS--------   73 (514)
T ss_dssp             HHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH--------
T ss_pred             HHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH--------
Confidence            4566677777776    6777777777777765 23567777777777777777777777777766543211        


Q ss_pred             ccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcC--CHHHHH-HHHHHHHhcCCCcccCHHHHHH-----------
Q 005877          203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG--NAGAMY-KIGLFYYFGLRGLRRDRTKALM-----------  268 (672)
Q Consensus       203 ~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~-~Lg~~y~~~~~~~~~~~~~A~~-----------  268 (672)
                              .+...++.++...|++++|+..|+++...+  +..... .+.......   ......+++.           
T Consensus        74 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~  142 (514)
T 2gw1_A           74 --------KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ---AMSKLKEKFGDIDTATATPTE  142 (514)
T ss_dssp             --------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHH---HHHHHTTC-------------
T ss_pred             --------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhh
Confidence                    223446666777777777777777765553  111111 111111000   0000001110           


Q ss_pred             -----------------------HHHHHHH----------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH----
Q 005877          269 -----------------------WFSKAAD----------KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR----  311 (672)
Q Consensus       269 -----------------------~~~~a~~----------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----  311 (672)
                                             .+.....          +.++.+++.+|.++..- ...+++++|+.+|+++++    
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~  221 (514)
T 2gw1_A          143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK-RSPESYDKADESFTKAARLFEE  221 (514)
T ss_dssp             --------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS-CCTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh-hhhccHHHHHHHHHHHHHHhhh
Confidence                                   0000000          12377788888876520 116899999999999998    


Q ss_pred             ------------cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCchhcHHHHHHH
Q 005877          312 ------------QQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKY  378 (672)
Q Consensus       312 ------------~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  378 (672)
                                  ..++.++..+|.++..     .|++++|+.+|+++++.+ .+.+++.+|.+|..    .+++++|+.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~A~~~  292 (514)
T 2gw1_A          222 QLDKNNEDEKLKEKLAISLEHTGIFKFL-----KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD----RNDSTEYYNY  292 (514)
T ss_dssp             HTTTSTTCHHHHHHHHHHHHHHHHHHHH-----SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT----SSCCTTGGGH
T ss_pred             hhccCccccccChHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH----CCCHHHHHHH
Confidence                        3456788999999986     679999999999998753 28899999999999    8999999999


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 005877          379 FLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL-  453 (672)
Q Consensus       379 ~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-  453 (672)
                      |+++++.  .++.++..+|.++..    .+++++|+.+|+++++..+  +.++..+|.++...|++++|+.+++++++. 
T Consensus       293 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  368 (514)
T 2gw1_A          293 FDKALKLDSNNSSVYYHRGQMNFI----LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF  368 (514)
T ss_dssp             HHHHHTTCTTCTHHHHHHHHHHHH----TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHhhcCcCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence            9999875  467899999999998    8999999999999998874  567889999999999999999999999765 


Q ss_pred             -CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCH------HHHHHHHHHHHhCCCC---C
Q 005877          454 -GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNE------HAALLIGDAYYYGRGT---Q  521 (672)
Q Consensus       454 -g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~------~a~~~lG~~y~~g~g~---~  521 (672)
                       +++.++.++|.++..                .+++++|+.+++++.+.  .++      .+++.+|.+|.    .   .
T Consensus       369 ~~~~~~~~~la~~~~~----------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~  428 (514)
T 2gw1_A          369 PEAPEVPNFFAEILTD----------------KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT----RNPTV  428 (514)
T ss_dssp             TTCSHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH----TSCCT
T ss_pred             ccCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh----hhhhc
Confidence             477889999999988                77899999999987553  333      39999999999    7   8


Q ss_pred             CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          522 RDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       522 ~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      +++++|+.+|+++++  ++++.+++.+|.+|..    .|++++|+.+|+++++++|+.
T Consensus       429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~  482 (514)
T 2gw1_A          429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ----QEDIDEAITLFEESADLARTM  482 (514)
T ss_dssp             THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhcccc
Confidence            999999999999977  4789999999999987    899999999999999999875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.95  E-value=6.8e-27  Score=226.38  Aligned_cols=199  Identities=21%  Similarity=0.238  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 005877          227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWL  306 (672)
Q Consensus       227 ~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~  306 (672)
                      .+|+.+|+++++.|++.+++.||.+|...     +|+++|++||+++++.+++.+++.||.+|.. .|++.|+++|+.||
T Consensus         3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~-----~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            3 TEPGSQYQQQAEAGDRRAQYYLADTWVSS-----GDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             -CTTHHHHHHHHTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             chHHHHHHHHHHCCCHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            46888999999999999999999999887     5999999999999999999999999999998 48888999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHH
Q 005877          307 THAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVA  382 (672)
Q Consensus       307 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A  382 (672)
                      +++++.+++.+++.||.+|..|.|+.+ |+++|+.+|+++++.++    +.++++||.+|..|.++.+|+++|+.||++|
T Consensus        77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           77 EKAVEAGSKSGEIVLARVLVNRQAGAT-DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTCGGGSSC-CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCCCcc-CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            999999999999999999998888766 99999999999999988    8999999999999999999999999999999


Q ss_pred             HHc-CCHHHHHHHHHHHHcCCC--ccCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005877          383 ANA-GHQKAFYQLAKMFHTGVG--LKKNLHMATALYKLVAERGPWSSLSRWAL  432 (672)
Q Consensus       383 ~~~-~~~~a~~~L~~~y~~g~g--~~~~~~~A~~~~~~a~~~~~~~a~~~lg~  432 (672)
                      ++. +++.++++||.+|..|.|  +.+|+++|+.||+++++.+++.+...++.
T Consensus       156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~  208 (212)
T 3rjv_A          156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDR  208 (212)
T ss_dssp             HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            997 889999999999999887  88999999999999999888887776654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.95  E-value=1e-26  Score=225.10  Aligned_cols=200  Identities=19%  Similarity=0.223  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccC
Q 005877          145 GKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRG  224 (672)
Q Consensus       145 ~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g  224 (672)
                      .+|+.+|+++++.|++.+++.||.+|...+++++|+.+|+++                                      
T Consensus         3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a--------------------------------------   44 (212)
T 3rjv_A            3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKA--------------------------------------   44 (212)
T ss_dssp             -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------------------------------
T ss_pred             chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH--------------------------------------
Confidence            457788888888888888888888887777777777776664                                      


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHH
Q 005877          225 EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALE  304 (672)
Q Consensus       225 ~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~  304 (672)
                                  ++.+++.+++.||.+|..+  ++++|+++|+++|+++++.+++.+++.||.+|..|.|+.+|+++|+.
T Consensus        45 ------------~~~g~~~a~~~lg~~y~~~--g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~  110 (212)
T 3rjv_A           45 ------------AAQGDGDALALLAQLKIRN--PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAIT  110 (212)
T ss_dssp             ------------HHTTCHHHHHHHHHHTTSS--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred             ------------HHcCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHH
Confidence                        4557888888888888873  77789999999999999999999999999999998888899999999


Q ss_pred             HHHHHHHcCC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCC--chhcHHHHHH
Q 005877          305 WLTHAARQQL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIG--VKRDVKLACK  377 (672)
Q Consensus       305 ~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g--~~~~~~~A~~  377 (672)
                      ||+++++.++    +.+++.||.+|..|.|+.+ |+++|+.+|+++++. +++.++++||.+|..|.+  +.+|+++|+.
T Consensus       111 ~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~  189 (212)
T 3rjv_A          111 LLQDAARDSESDAAVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALH  189 (212)
T ss_dssp             HHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHH
T ss_pred             HHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            9999998887    8899999999998888766 899999999999888 788899999999998876  7889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHH
Q 005877          378 YFLVAANAGHQKAFYQLAKM  397 (672)
Q Consensus       378 ~~~~A~~~~~~~a~~~L~~~  397 (672)
                      ||++|++.|++.+...|+.+
T Consensus       190 ~~~~A~~~g~~~A~~~l~~l  209 (212)
T 3rjv_A          190 WLNVSCLEGFDTGCEEFDRI  209 (212)
T ss_dssp             HHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHh
Confidence            99999999999988888865

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.3e-25  Score=242.66  Aligned_cols=411  Identities=17%  Similarity=0.071  Sum_probs=320.4

Q ss_pred             cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC-CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHH
Q 005877           85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQ  161 (672)
Q Consensus        85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~  161 (672)
                      +++++.+|..++.       .|++++|+..|+++... .++.+++.+|.+|..    .+++++|+.+++++++  ++++.
T Consensus         6 a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~   74 (514)
T 2gw1_A            6 ALALKDKGNQFFR-------NKKYDDAIKYYNWALELKEDPVFYSNLSACYVS----VGDLKKVVEMSTKALELKPDYSK   74 (514)
T ss_dssp             HHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSCCHH
T ss_pred             HHHHHHHHHHHHH-------hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHH----HhhHHHHHHHHHHHhccChHHHH
Confidence            4567788888775       58999999999996543 479999999999999    9999999999999986  78999


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhccc-CchhhhhHhhhccCChHH------------
Q 005877          162 SKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHN-GAEENKGALRKSRGEDDE------------  228 (672)
Q Consensus       162 a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~g~~~~------------  228 (672)
                      +++.+|.+|...|++++|+..|+++++..+....      .. ...+.. .............+..+.            
T Consensus        75 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  147 (514)
T 2gw1_A           75 VLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA------SI-EPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP  147 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG------GT-HHHHHHHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh
Confidence            9999999999999999999999999875431100      00 000000 000000000000000000            


Q ss_pred             ---------------HHHHHHHHH----------HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--------
Q 005877          229 ---------------AFQILEYQA----------QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--------  275 (672)
Q Consensus       229 ---------------Ai~~~~~aa----------~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--------  275 (672)
                                     .+..+....          ++.++.+.+.+|.+++..  ...+++++|+.+|+++++        
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~  225 (514)
T 2gw1_A          148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK--RSPESYDKADESFTKAARLFEEQLDK  225 (514)
T ss_dssp             ---------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS--CCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh--hhhccHHHHHHHHHHHHHHhhhhhcc
Confidence                           000000000          123488889999988751  112599999999999998        


Q ss_pred             --------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Q 005877          276 --------KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA  346 (672)
Q Consensus       276 --------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a  346 (672)
                              +.++.+++.+|.++..    .+++++|+.+|+++++.. .+.++..+|.+|..     .+++++|+.+|+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~  296 (514)
T 2gw1_A          226 NNEDEKLKEKLAISLEHTGIFKFL----KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD-----RNDSTEYYNYFDKA  296 (514)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT-----SSCCTTGGGHHHHH
T ss_pred             CccccccChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-----CCCHHHHHHHHHHH
Confidence                    4567899999999999    999999999999998753 28889999999986     67999999999999


Q ss_pred             HhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877          347 ADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG  422 (672)
Q Consensus       347 ~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~  422 (672)
                      ++.  +++.++..+|.+|..    .+++++|+.+|+++++..  ++.++..+|.++..    .+++++|+.+|+++++..
T Consensus       297 ~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~  368 (514)
T 2gw1_A          297 LKLDSNNSSVYYHRGQMNFI----LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR----ENKFDDCETLFSEAKRKF  368 (514)
T ss_dssp             HTTCTTCTHHHHHHHHHHHH----TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT----TTCHHHHHHHHHHHHHHS
T ss_pred             hhcCcCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHc
Confidence            886  478999999999999    999999999999998754  67899999999987    899999999999999886


Q ss_pred             C--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C------HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHH
Q 005877          423 P--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--Y------EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAH  492 (672)
Q Consensus       423 ~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~------~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~  492 (672)
                      +  +.++..+|.++...|++++|+.+|+++++..  +      ..++.++|.++....             ..+++++|+
T Consensus       369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~A~  435 (514)
T 2gw1_A          369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP-------------TVENFIEAT  435 (514)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC-------------CTTHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh-------------hcCCHHHHH
Confidence            4  6788999999999999999999999997653  3      238889999886410             035899999


Q ss_pred             HHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 005877          493 SLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYM  549 (672)
Q Consensus       493 ~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~  549 (672)
                      .+++++++  +.++.+++.+|.+|.    ..+++++|+.+|+++++.  +++.++..+.+.
T Consensus       436 ~~~~~a~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  492 (514)
T 2gw1_A          436 NLLEKASKLDPRSEQAKIGLAQMKL----QQEDIDEAITLFEESADLARTMEEKLQAITFA  492 (514)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            99998754  567899999999999    899999999999999874  667777666544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.95  E-value=1.4e-25  Score=248.40  Aligned_cols=422  Identities=12%  Similarity=0.032  Sum_probs=291.3

Q ss_pred             CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC
Q 005877           84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN  159 (672)
Q Consensus        84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~  159 (672)
                      .+.+++.+|..++.       .+++++|+..|+++  .++.++.+++.+|.+|..    .+++++|+.+|++++.  +++
T Consensus        24 ~a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~   92 (537)
T 3fp2_A           24 YAVQLKNRGNHFFT-------AKNFNEAIKYYQYAIELDPNEPVFYSNISACYIS----TGDLEKVIEFTTKALEIKPDH   92 (537)
T ss_dssp             HHHHHHHHHHHHHH-------TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHH-------hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCch
Confidence            35666777777664       78899999999995  456789999999999988    8899999999999876  788


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc
Q 005877          160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK  239 (672)
Q Consensus       160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~  239 (672)
                      +.+++.+|.++...|++++|+..|+ ++...+....                   .....+...+...+|+..+++....
T Consensus        93 ~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~-------------------~~~~~~~~~~~~~~a~~~~~~~l~~  152 (537)
T 3fp2_A           93 SKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDG-------------------ASIEPMLERNLNKQAMKVLNENLSK  152 (537)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHH-HHC------------------------------CHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCh-------------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999995 5544332110                   0111233444556788888776443


Q ss_pred             C--CH---HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCC----CcCCHHHHHHHHHH
Q 005877          240 G--NA---GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE--PQSMEFLGEIYARGAG----VERNYTKALEWLTH  308 (672)
Q Consensus       240 ~--~~---~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~g~g----~~~~~~~A~~~~~~  308 (672)
                      .  ..   .........++..     .+...++..+.+..+...  ......++.++....+    ..+++++|+..|++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~  227 (537)
T 3fp2_A          153 DEGRGSQVLPSNTSLASFFGI-----FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS  227 (537)
T ss_dssp             ------CCCCCHHHHHHHHHT-----SCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccccchHhHHHHHHHh-----cChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            1  00   0000111112222     144444444443332221  2233344444332000    02467777777777


Q ss_pred             HHHcC--C-------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCchhcHHHHHHH
Q 005877          309 AARQQ--L-------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKY  378 (672)
Q Consensus       309 a~~~~--~-------~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  378 (672)
                      +++..  +       ..++..+|.++..     .+++++|+.+|+++++.+ ++.+++.+|.++..    .+++++|+.+
T Consensus       228 ~l~~~p~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~  298 (537)
T 3fp2_A          228 LLSANTVDDPLRENAALALCYTGIFHFL-----KNNLLDAQVLLQESINLHPTPNSYIFLALTLAD----KENSQEFFKF  298 (537)
T ss_dssp             HHC--CCCHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC----SSCCHHHHHH
T ss_pred             HHHHCCCcchhhHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH----hcCHHHHHHH
Confidence            77542  3       2356677777765     568888888888887653 46778888888877    7888888888


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 005877          379 FLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL-  453 (672)
Q Consensus       379 ~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-  453 (672)
                      |+++++.  .++.++..+|.++..    .+++++|+.+|+++++..+  +.++..+|.++...|++++|+.+++++++. 
T Consensus       299 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  374 (537)
T 3fp2_A          299 FQKAVDLNPEYPPTYYHRGQMYFI----LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF  374 (537)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            8888763  467788888888887    7888888888888887764  557778888888888888888888888655 


Q ss_pred             -CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--C------HHHHHHHHHHHHhCCCCC---
Q 005877          454 -GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--N------EHAALLIGDAYYYGRGTQ---  521 (672)
Q Consensus       454 -g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~------~~a~~~lG~~y~~g~g~~---  521 (672)
                       .+..++.++|.++..                .+++++|+.+++++++..  +      ...++.+|.+|.    ..   
T Consensus       375 ~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~  434 (537)
T 3fp2_A          375 PTLPEVPTFFAEILTD----------------RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA----RQSSQ  434 (537)
T ss_dssp             TTCTHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH----HHHTC
T ss_pred             CCChHHHHHHHHHHHH----------------hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH----HHhhc
Confidence             466778888888877                667888888888765432  1      233567788888    66   


Q ss_pred             -------CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          522 -------RDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       522 -------~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                             +++++|+.+|+++++  ++++.++++||.+|..    .|++++|+++|+++++++|+..
T Consensus       435 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~  496 (537)
T 3fp2_A          435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ----MEKIDEAIELFEDSAILARTMD  496 (537)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--CH
T ss_pred             cchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCcH
Confidence                   999999999999976  4789999999999988    8999999999999999998754

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.94  E-value=1.9e-24  Score=239.26  Aligned_cols=427  Identities=15%  Similarity=0.055  Sum_probs=314.4

Q ss_pred             cCCCCccccccCCCCCCcccccCC--CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HhCCChHHHHHHH
Q 005877           56 FGDSESMTEENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLG  131 (672)
Q Consensus        56 ~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg  131 (672)
                      +...+......+++++|+..|+++  .+|+++.+++.+|.+++.       .+++++|+..|+++  .+++++.+++.+|
T Consensus        28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la  100 (537)
T 3fp2_A           28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIS-------TGDLEKVIEFTTKALEIKPDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            334455677889999999999999  557888999999999886       58999999999995  4578999999999


Q ss_pred             HHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcc
Q 005877          132 FLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIH  209 (672)
Q Consensus       132 ~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~  209 (672)
                      .+|..    .+++++|+..|+ ++.  ++.....   ...+...+...+|+..+++++...+.......  |        
T Consensus       101 ~~~~~----~g~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~--~--------  162 (537)
T 3fp2_A          101 SANES----LGNFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVL--P--------  162 (537)
T ss_dssp             HHHHH----HTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCC--C--------
T ss_pred             HHHHH----cCCHHHHHHHHH-HHhcCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCcccccccc--c--------
Confidence            99999    999999999996 554  2322222   22444455668899999988765433211100  0        


Q ss_pred             cCchhhhhHhhhccCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCC---CcccCHHHHHHHHHHHHHc--CC----
Q 005877          210 NGAEENKGALRKSRGEDDEAFQILEYQAQKG--NAGAMYKIGLFYYFGLR---GLRRDRTKALMWFSKAADK--GE----  278 (672)
Q Consensus       210 ~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~--~~~a~~~Lg~~y~~~~~---~~~~~~~~A~~~~~~a~~~--~~----  278 (672)
                         .......+....+.+.++..+.+..+..  .......++.++.....   ...+++++|+..|+++++.  ++    
T Consensus       163 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~  239 (537)
T 3fp2_A          163 ---SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR  239 (537)
T ss_dssp             ---CHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH
T ss_pred             ---hHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhh
Confidence               0111222334444555554444433332  22234444444432200   0013788888888888764  34    


Q ss_pred             ---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCH
Q 005877          279 ---PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA  352 (672)
Q Consensus       279 ---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~  352 (672)
                         +.++..+|.++..    .+++++|+.+|+++++.. .+.++..+|.++..     .+++++|+.+|+++++.  +++
T Consensus       240 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~  310 (537)
T 3fp2_A          240 ENAALALCYTGIFHFL----KNNLLDAQVLLQESINLHPTPNSYIFLALTLAD-----KENSQEFFKFFQKAVDLNPEYP  310 (537)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC-----SSCCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-----hcCHHHHHHHHHHHhccCCCCH
Confidence               3468889999998    999999999999999753 47889999999975     67999999999999875  589


Q ss_pred             HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHH
Q 005877          353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS  428 (672)
Q Consensus       353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~  428 (672)
                      .+++.+|.+|..    .+++++|+.+|+++++.  .++.++..+|.++..    .+++++|+.+|+++++..+  +.++.
T Consensus       311 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~  382 (537)
T 3fp2_A          311 PTYYHRGQMYFI----LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEAFFNETKLKFPTLPEVPT  382 (537)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             HHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            999999999999    99999999999999875  467899999999998    8999999999999999874  56889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC--C------HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH-
Q 005877          429 RWALESYLKGDVGKAFLLYSRMAELG--Y------EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS-  499 (672)
Q Consensus       429 ~lg~~~~~~g~~~~A~~~~~~a~~~g--~------~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-  499 (672)
                      .+|.++...|++++|+.+|+++++..  +      .....+.|.++...+..      .......+++++|+.+++++. 
T Consensus       383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~A~~~~~~a~~  456 (537)
T 3fp2_A          383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ------DPTQLDEEKFNAAIKLLTKACE  456 (537)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----------CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc------cchhhhHhHHHHHHHHHHHHHH
Confidence            99999999999999999999997654  1      22345667777661000      000111289999999999875 


Q ss_pred             -hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877          500 -EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ  537 (672)
Q Consensus       500 -~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~  537 (672)
                       .++++.+++.+|.+|.    ..+++++|+.+|+++++.
T Consensus       457 ~~p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          457 LDPRSEQAKIGLAQLKL----QMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HCTTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHH----HhccHHHHHHHHHHHHHh
Confidence             4667999999999999    899999999999999875

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.94  E-value=2.9e-25  Score=241.91  Aligned_cols=309  Identities=12%  Similarity=0.033  Sum_probs=208.4

Q ss_pred             CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 005877          122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-----------GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIA  190 (672)
Q Consensus       122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-----------~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~  190 (672)
                      ..+..+..||.+|..    .|++++|+++|++|.+           +....++.++|.+|...|++++|+.+|++++++.
T Consensus        49 ~~a~~yn~Lg~~~~~----~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           49 FKATMCNLLAYLKHL----KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             -CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            346678899999998    9999999999999964           2445788899999999999999999999999876


Q ss_pred             HhhhhccCCCCcccchhcccCchhhhhHh--hhccCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCcccCHHHH
Q 005877          191 VNSFLISKDSPVIEPIRIHNGAEENKGAL--RKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKA  266 (672)
Q Consensus       191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~g~~~~Ai~~~~~aa~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A  266 (672)
                      +....  +.++...      .+..++|..  ....+++++|+.+|+++.+  +.++.++..+|.+++..  +..++.++|
T Consensus       125 ~~~~~--~~~~~~~------~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l--~~~~~~~~a  194 (472)
T 4g1t_A          125 EKFSS--PYRIESP------ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL--DNWPPSQNA  194 (472)
T ss_dssp             HHSCC--SSCCCCH------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--HHSCCCCCT
T ss_pred             Hhccc--ccchhhH------HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCchHHHHH
Confidence            54321  1111111      112234433  3455678999999999854  46889999988887543  222467788


Q ss_pred             HHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Q 005877          267 LMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEY  342 (672)
Q Consensus       267 ~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~  342 (672)
                      ++.|+++++  +.++.++..+|..+..-....+++++|+.+|+++++.  .++.++..+|.+|..     .+++++|+.+
T Consensus       195 l~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~-----~~~~~~A~~~  269 (472)
T 4g1t_A          195 IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR-----KDEPDKAIEL  269 (472)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-----TTCHHHHHHH
T ss_pred             HHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH-----cCchHHHHHH
Confidence            999999876  4678888888877655333367888999999998865  478888999999986     5799999999


Q ss_pred             HHHHHhC--CCHHHHHHHHHHHHcCC---------------CchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC
Q 005877          343 FEKAADN--EEAGGHYNLGVMYYKGI---------------GVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVG  403 (672)
Q Consensus       343 ~~~a~~~--~~~~a~~~Lg~~y~~g~---------------g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g  403 (672)
                      |+++++.  +++.+++++|.+|....               .....+++|+..|+++.+.  .+..++..+|.+|..   
T Consensus       270 ~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~---  346 (472)
T 4g1t_A          270 LKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL---  346 (472)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH---
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH---
Confidence            9999875  57888999998885400               0112345555556555543  234555566666655   


Q ss_pred             ccCCHHHHHHHHHHHHHcCChh-----HHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 005877          404 LKKNLHMATALYKLVAERGPWS-----SLSRWALE-SYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       404 ~~~~~~~A~~~~~~a~~~~~~~-----a~~~lg~~-~~~~g~~~~A~~~~~~a~~~  453 (672)
                       .+++++|+.+|+++++..+..     .+..+|.. .+..|++++|+.+|+++++.
T Consensus       347 -~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i  401 (472)
T 4g1t_A          347 -ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI  401 (472)
T ss_dssp             -TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred             -hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             566666666666666554221     12333332 34555666666666666554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=1.4e-23  Score=226.76  Aligned_cols=355  Identities=15%  Similarity=0.091  Sum_probs=224.6

Q ss_pred             HHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005877          110 EATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAE  185 (672)
Q Consensus       110 ~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~  185 (672)
                      .+...+.+  ..++.++.+++.+|..|..    .+++++|+.+|++++.  ++++.+++.+|.+|...|++++|+.+|++
T Consensus        10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   85 (450)
T 2y4t_A           10 GVDLGTENLYFQSMADVEKHLELGKKLLA----AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK   85 (450)
T ss_dssp             -------------CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            44444444  3455678888888888888    8889999999988876  67888888899999888888888888888


Q ss_pred             HHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHH
Q 005877          186 LAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK  265 (672)
Q Consensus       186 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~  265 (672)
                      +++.                                                .+.++.+++.+|.+|...     +++++
T Consensus        86 al~~------------------------------------------------~p~~~~~~~~l~~~~~~~-----g~~~~  112 (450)
T 2y4t_A           86 VIQL------------------------------------------------KMDFTAARLQRGHLLLKQ-----GKLDE  112 (450)
T ss_dssp             HHHH------------------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHH
T ss_pred             HHhc------------------------------------------------CCCcHHHHHHHHHHHHHc-----CCHHH
Confidence            8763                                                234567777788877776     37888


Q ss_pred             HHHHHHHHHHcC--CH---HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHH
Q 005877          266 ALMWFSKAADKG--EP---QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAK  340 (672)
Q Consensus       266 A~~~~~~a~~~~--~~---~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~  340 (672)
                      |+.+|+++++..  ++   .++..++.++..                        .....+|.++..     .+++++|+
T Consensus       113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------~~~~~~a~~~~~-----~~~~~~A~  163 (450)
T 2y4t_A          113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------------------QRLRSQALNAFG-----SGDYTAAI  163 (450)
T ss_dssp             HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH-----HTCHHHHH
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHH------------------------HHHHHHHHHHHH-----cCCHHHHH
Confidence            888888877642  33   444444333211                        112223333332     23444444


Q ss_pred             HHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHH
Q 005877          341 EYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYK  416 (672)
Q Consensus       341 ~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~  416 (672)
                      .+|+++++.  +++.+++.+|.+|..    .+++++|+.+|+++++  +.++.+++.+|.+|..    .+++++|+.+|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~  235 (450)
T 2y4t_A          164 AFLDKILEVCVWDAELRELRAECFIK----EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ----LGDHELSLSEVR  235 (450)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence            444444433  244444455555544    4455555555554443  2344445555555544    455555555555


Q ss_pred             HHHHcCChh--H------------HHHHHHHHHhcCCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHHHhCCCCccc
Q 005877          417 LVAERGPWS--S------------LSRWALESYLKGDVGKAFLLYSRMAELG--Y----EVAQSNAAWILDKYGEGSMCM  476 (672)
Q Consensus       417 ~a~~~~~~~--a------------~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~----~~a~~nla~~l~~~~~~~~~~  476 (672)
                      ++++..+..  .            ...+|..+...|++++|+.+|+++++..  +    ...+.++|.++.+        
T Consensus       236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~--------  307 (450)
T 2y4t_A          236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK--------  307 (450)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT--------
T ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH--------
Confidence            554443221  1            1233777777788888888888776653  3    2356677777766        


Q ss_pred             CCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH---
Q 005877          477 GESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYM---  549 (672)
Q Consensus       477 ~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~---  549 (672)
                              .+++++|+.++++++  .++++.+++.+|.+|.    ..+++++|+.+|+++++.  +++.++..||.+   
T Consensus       308 --------~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          308 --------DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL----IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL  375 (450)
T ss_dssp             --------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             --------CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence                    667788888888765  4667889999999999    889999999999999774  788899999954   


Q ss_pred             ---------HHc-CCCCCCCHHHHHHHHHH-HHhcCCCCc
Q 005877          550 ---------HEH-GQGLPLDLHLAKRYYDQ-ALEVDPAAK  578 (672)
Q Consensus       550 ---------y~~-g~g~~~d~~~A~~~~~~-A~~~~~~~~  578 (672)
                               |.. |.....+.+++++.|++ +++..|+..
T Consensus       376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~  415 (450)
T 2y4t_A          376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF  415 (450)
T ss_dssp             HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred             hhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence                     322 22223467888998986 788888865

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.93  E-value=5.6e-24  Score=231.70  Aligned_cols=372  Identities=12%  Similarity=0.022  Sum_probs=266.6

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH
Q 005877          159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ  238 (672)
Q Consensus       159 ~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~  238 (672)
                      ....+..||.+|...|++++|+++|++++++.+...........       ..+..++|.++..+|++++|+.+++++.+
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~-------~~~~~nla~~y~~~g~~~~A~~~~~ka~~  122 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRS-------LVTWGNYAWVYYHMGRLSDVQIYVDKVKH  122 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTT-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHH-------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            34678889999999999999999999999976543322111100       12345799999999999999999999754


Q ss_pred             c----------CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 005877          239 K----------GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWL  306 (672)
Q Consensus       239 ~----------~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~  306 (672)
                      .          ..+.++..+|..+...+   .+++++|+++|+++++  ++++.++..+|.++.. .+..++.++|+..|
T Consensus       123 i~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~-l~~~~~~~~al~~~  198 (472)
T 4g1t_A          123 VCEKFSSPYRIESPELDCEEGWTRLKCG---GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYR-LDNWPPSQNAIDPL  198 (472)
T ss_dssp             HHHHSCCSSCCCCHHHHHHHHHHHHHHC---TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HHHSCCCCCTHHHH
T ss_pred             HhHhcccccchhhHHHHHHHHHHHHHHc---cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcCchHHHHHHHHH
Confidence            2          35788888888776532   1489999999999987  5789999999988543 00146778899999


Q ss_pred             HHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH
Q 005877          307 THAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA  382 (672)
Q Consensus       307 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A  382 (672)
                      +++++.  .++.++..+|..+..- +...+++++|+.+|+++++.  .++.++.++|.+|..    .+++++|+..|+++
T Consensus       199 ~~al~l~p~~~~~~~~l~~~~~~~-~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~a  273 (472)
T 4g1t_A          199 RQAIRLNPDNQYLKVLLALKLHKM-REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR----KDEPDKAIELLKKA  273 (472)
T ss_dssp             HHHHHHCSSCHHHHHHHHHHHHHC-C------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred             HHHhhcCCcchHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH----cCchHHHHHHHHHH
Confidence            999875  4788888898776531 12345889999999999876  589999999999999    99999999999999


Q ss_pred             HH--cCCHHHHHHHHHHHHcCC---------------CccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHH
Q 005877          383 AN--AGHQKAFYQLAKMFHTGV---------------GLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKA  443 (672)
Q Consensus       383 ~~--~~~~~a~~~L~~~y~~g~---------------g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A  443 (672)
                      ++  +.++.+++++|.+|..-.               .....+++|+.+|+++.+..+  ..++..+|.++...|++++|
T Consensus       274 l~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A  353 (472)
T 4g1t_A          274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA  353 (472)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred             HHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHH
Confidence            87  457889999999875310               012457889999999998875  45789999999999999999


Q ss_pred             HHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 005877          444 FLLYSRMAELGYEV-----AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR  518 (672)
Q Consensus       444 ~~~~~~a~~~g~~~-----a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~  518 (672)
                      +.+|+++++.....     .+.+++.++..               ..+++++|+.+|+++++..+....           
T Consensus       354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~Ai~~y~kal~i~~~~~~-----------  407 (472)
T 4g1t_A          354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLY---------------QMKCEDKAIHHFIEGVKINQKSRE-----------  407 (472)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHHHHHHHHH---------------TSSCHHHHHHHHHHHHHSCCCCHH-----------
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHH---------------HCCCHHHHHHHHHHHHhcCcccHH-----------
Confidence            99999998875321     23455544322               145789999999998776542110           


Q ss_pred             CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          519 GTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       519 g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                       ..+....+...++++++  ++++.++++||.+|..    .|++++|+++|++|++++|..
T Consensus       408 -~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~----~g~~~~A~~~y~kALe~~~~~  463 (472)
T 4g1t_A          408 -KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL----NEKMQQADEDSERGLESGSLI  463 (472)
T ss_dssp             -HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH----HHHCC----------------
T ss_pred             -HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC
Confidence             11233445566777765  4788999999999987    899999999999999998764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.93  E-value=3.5e-22  Score=208.08  Aligned_cols=312  Identities=14%  Similarity=0.060  Sum_probs=195.4

Q ss_pred             ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCC
Q 005877          123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS  200 (672)
Q Consensus       123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~  200 (672)
                      ++++++.+|..|..    .+++++|+.+|++++.  +.++.+++.+|.++...|++++|+.+|+++++.           
T Consensus         2 ~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------   66 (359)
T 3ieg_A            2 DVEKHLELGKKLLA----AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-----------   66 (359)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred             cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------
Confidence            45677888888887    7888888888888765  577888888888888888888888888887653           


Q ss_pred             CcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----
Q 005877          201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----  276 (672)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----  276 (672)
                                                           .+.++.+++.+|.++...     +++++|+.+|+++++.    
T Consensus        67 -------------------------------------~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~  104 (359)
T 3ieg_A           67 -------------------------------------KMDFTAARLQRGHLLLKQ-----GKLDEAEDDFKKVLKSNPSE  104 (359)
T ss_dssp             -------------------------------------CTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHTSCCCH
T ss_pred             -------------------------------------CCCcchHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCcc
Confidence                                                 234667777888888777     3788888888887764    


Q ss_pred             -CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHH
Q 005877          277 -GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG  353 (672)
Q Consensus       277 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~  353 (672)
                       .++.++..++.++..                        .....+|.++..     .+++++|+.+|+++++.  +++.
T Consensus       105 ~~~~~~~~~l~~~~~~------------------------~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~  155 (359)
T 3ieg_A          105 QEEKEAESQLVKADEM------------------------QRLRSQALDAFD-----GADYTAAITFLDKILEVCVWDAE  155 (359)
T ss_dssp             HHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cChHHHHHHHHHHHHH------------------------HHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCchH
Confidence             334455555332211                        112223333332     23444444444444432  2444


Q ss_pred             HHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh-------
Q 005877          354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW-------  424 (672)
Q Consensus       354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-------  424 (672)
                      ++..+|.++..    .+++++|+..|+++++.  .++.+++.+|.++..    .+++++|+.+|+++++..+.       
T Consensus       156 ~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~  227 (359)
T 3ieg_A          156 LRELRAECFIK----EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAH  227 (359)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCccchHHHHH
Confidence            44444544444    44455555555544432  234444455554444    44555555555555444322       


Q ss_pred             -------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHH
Q 005877          425 -------SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQ  497 (672)
Q Consensus       425 -------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  497 (672)
                             .....+|..+...|++++|+..|+++++........                                     
T Consensus       228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------------------------------------  270 (359)
T 3ieg_A          228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY-------------------------------------  270 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH-------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH-------------------------------------
Confidence                   123345778888899999999999987754221100                                     


Q ss_pred             HHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877          498 ASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP  575 (672)
Q Consensus       498 a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  575 (672)
                           ...++..+|.+|.    ..+++++|+.+|+++++  ++++.+++++|.+|..    .|++++|+.+|+++++++|
T Consensus       271 -----~~~~~~~la~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~p  337 (359)
T 3ieg_A          271 -----TVRSKERICHCFS----KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI----EEMYDEAIQDYEAAQEHNE  337 (359)
T ss_dssp             -----HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCT
T ss_pred             -----HHHHHHHHHHHHH----HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Confidence                 0123456777777    67788888888888766  3577788888888776    7788888888888888877


Q ss_pred             CCc
Q 005877          576 AAK  578 (672)
Q Consensus       576 ~~~  578 (672)
                      +..
T Consensus       338 ~~~  340 (359)
T 3ieg_A          338 NDQ  340 (359)
T ss_dssp             TCH
T ss_pred             CCh
Confidence            653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=2.5e-22  Score=216.99  Aligned_cols=321  Identities=11%  Similarity=0.042  Sum_probs=238.0

Q ss_pred             CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-
Q 005877           80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-  156 (672)
Q Consensus        80 ~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-  156 (672)
                      .+|.++.+++.+|..++.       .+++++|+..|+++.  .+.++.+++.+|.+|..    .+++++|+.+|+++++ 
T Consensus        21 ~~p~~~~~~~~~~~~~~~-------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~   89 (450)
T 2y4t_A           21 QSMADVEKHLELGKKLLA-------AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA----MGKSKAALPDLTKVIQL   89 (450)
T ss_dssp             --CHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence            345667778888888775       589999999999955  56889999999999999    9999999999999987 


Q ss_pred             -CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHH
Q 005877          157 -GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY  235 (672)
Q Consensus       157 -~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~  235 (672)
                       ++++.++..+|.+|...|++++|+.+|+++++..+..                                 ..+...+..
T Consensus        90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------------------------~~~~~~~~~  136 (450)
T 2y4t_A           90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE---------------------------------NEEKEAQSQ  136 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH---------------------------------HHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------------------------hhhHHHHHH
Confidence             6889999999999999999999999999987643211                                 000011111


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-
Q 005877          236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-  312 (672)
Q Consensus       236 aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-  312 (672)
                      .+........+.+|.++...     +++++|+.+|+++++  +.++.++..+|.+|..    .+++++|+.+|+++++. 
T Consensus       137 l~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  207 (450)
T 2y4t_A          137 LIKSDEMQRLRSQALNAFGS-----GDYTAAIAFLDKILEVCVWDAELRELRAECFIK----EGEPRKAISDLKAASKLK  207 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence            11112233455667777766     388888888888776  3567788888888887    78888888888887754 


Q ss_pred             -CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHH------------HHHHHcCCCchhcHHHHHH
Q 005877          313 -QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNL------------GVMYYKGIGVKRDVKLACK  377 (672)
Q Consensus       313 -~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~L------------g~~y~~g~g~~~~~~~A~~  377 (672)
                       +++.++..+|.+|..     .|++++|+.+|+++++.  +++.++..+            |.++..    .+++++|+.
T Consensus       208 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~  278 (450)
T 2y4t_A          208 NDNTEAFYKISTLYYQ-----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATS  278 (450)
T ss_dssp             CSCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence             567778888888875     56888888888887665  345554444            777777    788888888


Q ss_pred             HHHHHHHcC--C----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877          378 YFLVAANAG--H----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSR  449 (672)
Q Consensus       378 ~~~~A~~~~--~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~  449 (672)
                      +|+++++..  +    ...+..+|.++..    .+++++|+.+++++++..|  +.++..+|.++...|++++|+.+|++
T Consensus       279 ~~~~~l~~~p~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  354 (450)
T 2y4t_A          279 KYESVMKTEPSIAEYTVRSKERICHCFSK----DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET  354 (450)
T ss_dssp             HHHHHHHHCCSSHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            888887643  3    3467778888876    7888888888888877653  56777888888888888888888888


Q ss_pred             HHHc--CCHHHHHHHHHHH
Q 005877          450 MAEL--GYEVAQSNAAWIL  466 (672)
Q Consensus       450 a~~~--g~~~a~~nla~~l  466 (672)
                      +++.  +++.++..++.+.
T Consensus       355 al~~~p~~~~~~~~l~~~~  373 (450)
T 2y4t_A          355 AQEHNENDQQIREGLEKAQ  373 (450)
T ss_dssp             HHTTSSSCHHHHHHHHHHH
T ss_pred             HHHhCcchHHHHHHHHHHH
Confidence            8654  4666666666554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=3.3e-22  Score=208.28  Aligned_cols=284  Identities=13%  Similarity=0.073  Sum_probs=215.1

Q ss_pred             CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 005877          241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYS  316 (672)
Q Consensus       241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~  316 (672)
                      ++++++.+|..++..     +++++|+..|+++++  +.++.+++.+|.+|..    .+++++|+.+|+++++.  +++.
T Consensus         2 ~~~~~~~~~~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~   72 (359)
T 3ieg_A            2 DVEKHLELGKKLLAA-----GQLADALSQFHAAVDGDPDNYIAYYRRATVFLA----MGKSKAALPDLTKVIALKMDFTA   72 (359)
T ss_dssp             HHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcch
Confidence            456667777777766     377777777777765  3566777777777777    77777777777777654  3666


Q ss_pred             HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHH------------HHHHHcCCCchhcHHHHHHHH
Q 005877          317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGHYNL------------GVMYYKGIGVKRDVKLACKYF  379 (672)
Q Consensus       317 a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-----~~~a~~~L------------g~~y~~g~g~~~~~~~A~~~~  379 (672)
                      ++..+|.+|..     .|++++|+.+|+++++..     ++.++..+            |.++..    .+++++|+.+|
T Consensus        73 ~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~  143 (359)
T 3ieg_A           73 ARLQRGHLLLK-----QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD----GADYTAAITFL  143 (359)
T ss_dssp             HHHHHHHHHHH-----HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred             HHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHH
Confidence            77777777764     457777777777776653     33444444            788888    89999999999


Q ss_pred             HHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 005877          380 LVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG-  454 (672)
Q Consensus       380 ~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g-  454 (672)
                      +++++  +.++.++..+|.++..    .+++++|+.+++++++..|  +.++..+|.++...|++++|+..|+++++.. 
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  219 (359)
T 3ieg_A          144 DKILEVCVWDAELRELRAECFIK----EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ  219 (359)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHhCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            99987  4578999999999998    8999999999999998874  6788999999999999999999999998764 


Q ss_pred             -CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005877          455 -YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMH  533 (672)
Q Consensus       455 -~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~  533 (672)
                       +..+...+..+.                                    .......+|.++.    ..+++++|+.+|++
T Consensus       220 ~~~~~~~~~~~~~------------------------------------~~~~~~~~a~~~~----~~~~~~~A~~~~~~  259 (359)
T 3ieg_A          220 DHKRCFAHYKQVK------------------------------------KLNKLIESAEELI----RDGRYTDATSKYES  259 (359)
T ss_dssp             TCHHHHHHHHHHH------------------------------------HHHHHHHHHHHHH----HTTCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHH------------------------------------HHHHHHHHHHHHH----HcCCHHHHHHHHHH
Confidence             444332222110                                    2345677899999    88999999999999


Q ss_pred             HHhc--CCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 005877          534 ARSQ--SNA----QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPVTLALTSLWIR  591 (672)
Q Consensus       534 A~~~--~~~----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~~~~~~~~~~  591 (672)
                      +++.  .++    .++..+|.+|..    .+++++|+.+|+++++.+|+... ....+...+..
T Consensus       260 ~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~  318 (359)
T 3ieg_A          260 VMKTEPSVAEYTVRSKERICHCFSK----DEKPVEAIRICSEVLQMEPDNVN-ALKDRAEAYLI  318 (359)
T ss_dssp             HHHHCCSSHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHH
T ss_pred             HHhcCCCchHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHH
Confidence            9874  444    457789999987    89999999999999999987542 33344444443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.6e-20  Score=193.35  Aligned_cols=274  Identities=16%  Similarity=0.104  Sum_probs=195.6

Q ss_pred             CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCC
Q 005877          122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD  199 (672)
Q Consensus       122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~  199 (672)
                      .+++....+|..+..    .+++++|+.+|+++..  +.++.++..++.++...|++++|+.+++++++.          
T Consensus        20 ~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------   85 (330)
T 3hym_B           20 ENLDVVVSLAERHYY----NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL----------   85 (330)
T ss_dssp             CCCTTHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----------
T ss_pred             hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh----------
Confidence            445555555555555    5555555555555543  344555555555555555555555555555442          


Q ss_pred             CCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--C
Q 005877          200 SPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G  277 (672)
Q Consensus       200 ~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~  277 (672)
                                                            .+.++.+++.+|.++...+    +++++|+.+|+++++.  .
T Consensus        86 --------------------------------------~~~~~~~~~~l~~~~~~~~----~~~~~A~~~~~~a~~~~~~  123 (330)
T 3hym_B           86 --------------------------------------YPSNPVSWFAVGCYYLMVG----HKNEHARRYLSKATTLEKT  123 (330)
T ss_dssp             --------------------------------------CTTSTHHHHHHHHHHHHSC----SCHHHHHHHHHHHHTTCTT
T ss_pred             --------------------------------------CcCCHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHhCCc
Confidence                                                  2346677778888777662    2778888888887763  5


Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHH
Q 005877          278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG  353 (672)
Q Consensus       278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~  353 (672)
                      ++.++..+|.+|..    .+++++|+..|+++++.  ++..++..+|.+|..     .+++++|+.+|+++++.  .++.
T Consensus       124 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~  194 (330)
T 3hym_B          124 YGPAWIAYGHSFAV----ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-----TNNSKLAERFFSQALSIAPEDPF  194 (330)
T ss_dssp             CTHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHhCCCChH
Confidence            67778888888887    78888888888888764  356777778888875     56888888888888775  4677


Q ss_pred             HHHHHHHHHHcCCCchhcHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877          354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAAN-----------AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG  422 (672)
Q Consensus       354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~-----------~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~  422 (672)
                      +++.+|.++..    .+++++|+.+|+++++           ...+.++..+|.++..    .+++++|+.+|+++++..
T Consensus       195 ~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~  266 (330)
T 3hym_B          195 VMHEVGVVAFQ----NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK----LKKYAEALDYHRQALVLI  266 (330)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHH----cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhC
Confidence            88888888888    7888888888888876           3345788888888887    788888888888888776


Q ss_pred             C--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 005877          423 P--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK  468 (672)
Q Consensus       423 ~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~  468 (672)
                      +  +.++..+|.++...|++++|+.+|+++++.  +++.+...++.++..
T Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  316 (330)
T 3hym_B          267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM  316 (330)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence            3  567888888888888888888888888654  578888888887743

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.5e-20  Score=193.63  Aligned_cols=272  Identities=14%  Similarity=0.107  Sum_probs=231.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC
Q 005877          239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QL  314 (672)
Q Consensus       239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~  314 (672)
                      +.+++..+.+|..++..     +++++|+++|+++++.  .++.++..++.++..    .+++++|+.+++++++.  .+
T Consensus        19 ~~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~   89 (330)
T 3hym_B           19 QENLDVVVSLAERHYYN-----CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE----LNKANELFYLSHKLVDLYPSN   89 (330)
T ss_dssp             -CCCTTHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTS
T ss_pred             hhhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCC
Confidence            35778888999999888     4999999999998874  567788888888888    89999999999999875  47


Q ss_pred             HHHHHHHHHHHHcCCCCCcC-CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHH
Q 005877          315 YSAYNGIGYLYVKGYGVEKK-NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK  389 (672)
Q Consensus       315 ~~a~~~Lg~~y~~g~g~~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~  389 (672)
                      +.++..+|.++..     .+ ++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+..|+++++.  ++..
T Consensus        90 ~~~~~~l~~~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~  160 (330)
T 3hym_B           90 PVSWFAVGCYYLM-----VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV----ESEHDQAMAAYFTAAQLMKGCHL  160 (330)
T ss_dssp             THHHHHHHHHHHH-----SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCSH
T ss_pred             HHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhccccHH
Confidence            8899999999986     56 899999999999876  478899999999999    99999999999999874  4568


Q ss_pred             HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------CCH
Q 005877          390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL-----------GYE  456 (672)
Q Consensus       390 a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-----------g~~  456 (672)
                      ++..+|.+|..    .+++++|+.+|+++++..+  +.++..+|.++...|++++|+.+++++++.           ...
T Consensus       161 ~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  236 (330)
T 3hym_B          161 PMLYIGLEYGL----TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE  236 (330)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred             HHHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence            88999999998    8999999999999998874  567889999999999999999999999773           446


Q ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005877          457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHA  534 (672)
Q Consensus       457 ~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A  534 (672)
                      .++.++|.++..                .+++++|+.+++++++  +.++.+++.+|.+|.    ..+++++|+.+|+++
T Consensus       237 ~~~~~la~~~~~----------------~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~a  296 (330)
T 3hym_B          237 PLLNNLGHVCRK----------------LKKYAEALDYHRQALVLIPQNASTYSAIGYIHS----LMGNFENAVDYFHTA  296 (330)
T ss_dssp             HHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH----HHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH----------------hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHH----HhccHHHHHHHHHHH
Confidence            788888888877                6678888888887654  456788888888888    788888888888888


Q ss_pred             Hhc--CCHHHHHHHHHHHHc
Q 005877          535 RSQ--SNAQAMFNLGYMHEH  552 (672)
Q Consensus       535 ~~~--~~~~a~~~Lg~~y~~  552 (672)
                      ++.  +++.++..||.+++.
T Consensus       297 l~~~p~~~~~~~~l~~~~~~  316 (330)
T 3hym_B          297 LGLRRDDTFSVTMLGHCIEM  316 (330)
T ss_dssp             TTTCSCCHHHHHHHHHHHHT
T ss_pred             HccCCCchHHHHHHHHHHHH
Confidence            764  678888888888754

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.86  E-value=1.2e-20  Score=197.74  Aligned_cols=270  Identities=12%  Similarity=0.056  Sum_probs=183.3

Q ss_pred             CHHHHHH-HHHHHHHc--CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCC
Q 005877          262 DRTKALM-WFSKAADK--GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVE  332 (672)
Q Consensus       262 ~~~~A~~-~~~~a~~~--~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~  332 (672)
                      ++++|++ .|++++..  .+    ..+++.+|.++..    .+++++|+.+|+++++.  +++.++..+|.+|..     
T Consensus        40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----  110 (368)
T 1fch_A           40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE-----  110 (368)
T ss_dssp             ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-----
T ss_pred             HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----
Confidence            5666666 66655442  12    3445666666666    66666666666666654  355666666666654     


Q ss_pred             cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC--HHHH----------------H
Q 005877          333 KKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH--QKAF----------------Y  392 (672)
Q Consensus       333 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--~~a~----------------~  392 (672)
                      .|++++|+.+|+++++.  +++.+++.+|.+|..    .+++++|+.+|+++++..+  ....                .
T Consensus       111 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (368)
T 1fch_A          111 NEQELLAISALRRCLELKPDNQTALMALAVSFTN----ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR  186 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred             CcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence            44666666666666554  356666666666666    6666666666666655332  1111                1


Q ss_pred             HHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877          393 QLAKMFHTGVGLKKNLHMATALYKLVAERGPW----SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL  466 (672)
Q Consensus       393 ~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l  466 (672)
                      .++.++ .    .+++++|+.+|+++++..|.    .++..+|.++...|++++|+.+|+++++.  .++.++.++|.++
T Consensus       187 ~~~~~~-~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  261 (368)
T 1fch_A          187 ILGSLL-S----DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL  261 (368)
T ss_dssp             TTHHHH-H----HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHh-h----cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            455555 3    57788888888888777644    45677788888888888888888888654  4677788888887


Q ss_pred             HHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC---
Q 005877          467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN---  539 (672)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~---  539 (672)
                      ..                .+++++|+.+++++++  ++++.+++++|.+|.    ..+++++|+.+|+++++.  ++   
T Consensus       262 ~~----------------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~  321 (368)
T 1fch_A          262 AN----------------GNQSEEAVAAYRRALELQPGYIRSRYNLGISCI----NLGAHREAVEHFLEALNMQRKSRGP  321 (368)
T ss_dssp             HH----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHTC---
T ss_pred             HH----------------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhCCCCCCc
Confidence            77                6678888888887644  567888999999999    889999999999999763  44   


Q ss_pred             --------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877          540 --------AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV  573 (672)
Q Consensus       540 --------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  573 (672)
                              +.++.+||.+|..    .|++++|..+++++++.
T Consensus       322 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          322 RGEGGAMSENIWSTLRLALSM----LGQSDAYGAADARDLST  359 (368)
T ss_dssp             ---CCCCCHHHHHHHHHHHHH----HTCGGGHHHHHTTCHHH
T ss_pred             cccccchhhHHHHHHHHHHHH----hCChHhHHHhHHHHHHH
Confidence                    7899999999987    88999999998877653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.85  E-value=2.5e-19  Score=187.77  Aligned_cols=292  Identities=15%  Similarity=0.105  Sum_probs=190.6

Q ss_pred             cccCCCCCCcc-cccCCCC--CC----CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCChHHHHHHHHHh
Q 005877           64 EENLDPGSWSP-VFEPSID--PG----AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPHARSVLGFLY  134 (672)
Q Consensus        64 ~~~~~~~~a~~-~~~~~~~--~~----~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y  134 (672)
                      ...+++++|+. .|+++..  +.    .....+.+|..++.       .+++++|+..|+++..  +.++.+++.+|.+|
T Consensus        36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  108 (368)
T 1fch_A           36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ-------EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ  108 (368)
T ss_dssp             ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH-------TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34568888888 7776633  32    25668889988875       5899999999999665  57899999999999


Q ss_pred             hcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCc
Q 005877          135 GMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGA  212 (672)
Q Consensus       135 ~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  212 (672)
                      ..    .+++++|+.+|++++.  ++++.++..+|.+|...|++++|+.+|+++++..+.......              
T Consensus       109 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------------  170 (368)
T 1fch_A          109 AE----NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT--------------  170 (368)
T ss_dssp             HH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred             HH----CcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH--------------
Confidence            99    9999999999999986  689999999999999999999999999999886543211100              


Q ss_pred             hhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--C--CHHHHHHHHHH
Q 005877          213 EENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G--EPQSMEFLGEI  288 (672)
Q Consensus       213 ~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~--~~~a~~~Lg~~  288 (672)
                        ..       +..         ............+|.++ ..     +++++|+.+|+++++.  .  ++.++..+|.+
T Consensus       171 --~~-------~~~---------~~~~~~~~~~~~~~~~~-~~-----~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~  226 (368)
T 1fch_A          171 --PA-------EEG---------AGGAGLGPSKRILGSLL-SD-----SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  226 (368)
T ss_dssp             ---------------------------------CTTHHHH-HH-----HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             --HH-------HHH---------hhhhcccHHHHHHHHHh-hc-----ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence              00       000         00001112223444444 22     2666666666666653  3  45666666776


Q ss_pred             HHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 005877          289 YARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYK  364 (672)
Q Consensus       289 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  364 (672)
                      |..    .+++++|+.+|+++++.  .++.++..+|.++..     .|++++|+.+|+++++.  +++.+++++|.+|..
T Consensus       227 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  297 (368)
T 1fch_A          227 FNL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  297 (368)
T ss_dssp             HHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            666    66677777777766653  356666677776664     45677777777776654  356667777777776


Q ss_pred             CCCchhcHHHHHHHHHHHHHc--CC-----------HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHc
Q 005877          365 GIGVKRDVKLACKYFLVAANA--GH-----------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER  421 (672)
Q Consensus       365 g~g~~~~~~~A~~~~~~A~~~--~~-----------~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~  421 (672)
                          .+++++|+.+|+++++.  .+           ..++..+|.++..    .+++++|..+++++++.
T Consensus       298 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          298 ----LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM----LGQSDAYGAADARDLST  359 (368)
T ss_dssp             ----HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH----HTCGGGHHHHHTTCHHH
T ss_pred             ----CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH----hCChHhHHHhHHHHHHH
Confidence                67777777777776552  23           5667777777766    67777777776665543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=2.5e-19  Score=188.02  Aligned_cols=252  Identities=14%  Similarity=0.063  Sum_probs=171.8

Q ss_pred             HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 005877          125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV  202 (672)
Q Consensus       125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~  202 (672)
                      ..++.+|..|..    .+++++|+.+|++++.  ++++.+++.+|.+|...|++++|+.+|+++++.             
T Consensus        66 ~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------  128 (365)
T 4eqf_A           66 PGAFEEGLKRLK----EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-------------  128 (365)
T ss_dssp             TTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred             hHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------
Confidence            345566666665    5666666666666654  456666666666666666666666666665542             


Q ss_pred             ccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc------
Q 005877          203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK------  276 (672)
Q Consensus       203 ~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~------  276 (672)
                                                         .+.++.++..+|.+|...     +++++|+.+|+++++.      
T Consensus       129 -----------------------------------~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~p~~~~  168 (365)
T 4eqf_A          129 -----------------------------------QPNNLKALMALAVSYTNT-----SHQQDACEALKNWIKQNPKYKY  168 (365)
T ss_dssp             -----------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCHHHHC
T ss_pred             -----------------------------------CCCCHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHhCccchH
Confidence                                               223455566666666555     3666666666666552      


Q ss_pred             ------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Q 005877          277 ------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA  346 (672)
Q Consensus       277 ------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a  346 (672)
                            +.+.....+|.+|..    .+++++|+.+|+++++..    ++.++..+|.+|..     .|++++|+.+|+++
T Consensus       169 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~a  239 (365)
T 4eqf_A          169 LVKNKKGSPGLTRRMSKSPVD----SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-----SGEFNRAIDAFNAA  239 (365)
T ss_dssp             C-------------------C----CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHH
T ss_pred             HHhhhccchHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH-----CCCHHHHHHHHHHH
Confidence                  223344556778887    888888888888888653    67788888888875     56888888888888


Q ss_pred             HhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877          347 ADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG  422 (672)
Q Consensus       347 ~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~  422 (672)
                      ++.  +++.+++++|.+|..    .+++++|+.+|+++++.  +++.+++++|.+|..    .+++++|+.+|+++++..
T Consensus       240 l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~  311 (365)
T 4eqf_A          240 LTVRPEDYSLWNRLGATLAN----GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN----LGAYREAVSNFLTALSLQ  311 (365)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence            775  478888888888888    88888888888888774  467888888888887    888888888888887764


Q ss_pred             C--------------hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877          423 P--------------WSSLSRWALESYLKGDVGKAFLLYSRM  450 (672)
Q Consensus       423 ~--------------~~a~~~lg~~~~~~g~~~~A~~~~~~a  450 (672)
                      +              ...+..++.++...|+.+.+.....+.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  353 (365)
T 4eqf_A          312 RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD  353 (365)
T ss_dssp             HCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred             cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence            2              356778888888888888887766653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.83  E-value=4.9e-20  Score=164.72  Aligned_cols=133  Identities=27%  Similarity=0.353  Sum_probs=81.8

Q ss_pred             CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCH
Q 005877          257 RGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNY  336 (672)
Q Consensus       257 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~  336 (672)
                      .|+++|+++|+++|+++++.+++.++  ||.+|..|    ...++|+.||+++++.+++.+++.||.+|..|.|+.+ |+
T Consensus         5 ~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g----~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~-d~   77 (138)
T 1klx_A            5 GTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQ----INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK-DL   77 (138)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTT----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC-CH
T ss_pred             cCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCc-cH
Confidence            45566666666666666666666666  66666653    3344466666666666666666666666666666544 66


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005877          337 TKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAK  396 (672)
Q Consensus       337 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~  396 (672)
                      ++|+.||++|++.+++.++++||.+|..|.|+.+|+++|+.||++|++.+++.+..+|+.
T Consensus        78 ~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~  137 (138)
T 1klx_A           78 RKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN  137 (138)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence            666666666666666666666666666666666666666666666666666666665553

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.83  E-value=1.6e-18  Score=181.85  Aligned_cols=263  Identities=17%  Similarity=0.186  Sum_probs=160.7

Q ss_pred             CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC
Q 005877           84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN  159 (672)
Q Consensus        84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~  159 (672)
                      +...++.+|..++.       .+++++|+..|+++.  .+.++.+++.+|.+|..    .+++++|+.+|++++.  +.+
T Consensus        64 ~~~~~~~~~~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~  132 (365)
T 4eqf_A           64 DWPGAFEEGLKRLK-------EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAE----NENEQAAIVALQRCLELQPNN  132 (365)
T ss_dssp             TCTTHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred             chhHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCC
Confidence            45668999998885       589999999999954  56899999999999999    9999999999999987  688


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc
Q 005877          160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK  239 (672)
Q Consensus       160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~  239 (672)
                      +.++..+|.+|...|++++|+.+|+++++..+......                ..+                      .
T Consensus       133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------------~~~----------------------~  174 (365)
T 4eqf_A          133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV----------------KNK----------------------K  174 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------------------------
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH----------------hhh----------------------c
Confidence            99999999999999999999999999998765532110                000                      0


Q ss_pred             CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--C--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C
Q 005877          240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--Q  313 (672)
Q Consensus       240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~  313 (672)
                      +.+.....+|.++...     +++++|+.+|+++++.  .  ++.++..+|.+|..    .+++++|+.+|+++++.  +
T Consensus       175 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~  245 (365)
T 4eqf_A          175 GSPGLTRRMSKSPVDS-----SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL----SGEFNRAIDAFNAALTVRPE  245 (365)
T ss_dssp             --------------CC-----HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTT
T ss_pred             cchHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCC
Confidence            2233334444444433     2555555555555442  2  44555555555554    55555555555555443  2


Q ss_pred             CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----
Q 005877          314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----  386 (672)
Q Consensus       314 ~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----  386 (672)
                      ++.++..+|.+|..     .|++++|+.+|+++++.  +++.+++++|.+|..    .+++++|+.+|+++++..     
T Consensus       246 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~  316 (365)
T 4eqf_A          246 DYSLWNRLGATLAN-----GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN----LGAYREAVSNFLTALSLQRKSRN  316 (365)
T ss_dssp             CHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHHHCC--
T ss_pred             CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccCC
Confidence            44555555555543     34555555555555443  245555555555555    555555555555554421     


Q ss_pred             ---------CHHHHHHHHHHHHcCCCccCCHHHHHHHHHH
Q 005877          387 ---------HQKAFYQLAKMFHTGVGLKKNLHMATALYKL  417 (672)
Q Consensus       387 ---------~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~  417 (672)
                               ....+..|+.++..    .++.+.+....++
T Consensus       317 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~  352 (365)
T 4eqf_A          317 QQQVPHPAISGNIWAALRIALSL----MDQPELFQAANLG  352 (365)
T ss_dssp             ----------CHHHHHHHHHHHH----HTCHHHHHHHHTT
T ss_pred             CcccchhhhHHHHHHHHHHHHHH----cCcHHHHHHHHHh
Confidence                     13455555555554    5555555554444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.82  E-value=8.2e-20  Score=163.27  Aligned_cols=136  Identities=21%  Similarity=0.263  Sum_probs=125.9

Q ss_pred             HcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCch
Q 005877          290 ARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVK  369 (672)
Q Consensus       290 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~  369 (672)
                      ..|.|+++|+++|+.||+++++.+++.++  ||.+|..|     ...++|+.+|++|++.+++.++++||.+|..|.|+.
T Consensus         2 ~~G~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g-----~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~   74 (138)
T 1klx_A            2 VGGGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQ-----INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVK   74 (138)
T ss_dssp             -CCSSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTT-----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred             CCCcCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCC
Confidence            45889999999999999999999999999  99999874     366779999999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005877          370 RDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWAL  432 (672)
Q Consensus       370 ~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~  432 (672)
                      +|+++|+.||++|++.+++.++++||.+|..|.|+.+|+++|+.||+++++.+++.+..+++.
T Consensus        75 ~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~  137 (138)
T 1klx_A           75 KDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN  137 (138)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred             ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999888777653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.82  E-value=1.8e-18  Score=177.61  Aligned_cols=144  Identities=16%  Similarity=0.143  Sum_probs=113.2

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhc
Q 005877          296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD  371 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~  371 (672)
                      .+++++|+.+++++++.  .++.++..+|.+|..     .+++++|+.+++++++.  +++.++..+|.++..    .++
T Consensus       151 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~  221 (327)
T 3cv0_A          151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL-----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN----GNR  221 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTC
T ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Confidence            67888888888887764  367778888888875     56888888888888765  467788888888888    788


Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--------------hHHHHHHHHHH
Q 005877          372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--------------SSLSRWALESY  435 (672)
Q Consensus       372 ~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--------------~a~~~lg~~~~  435 (672)
                      +++|+.+|+++++.  .++.++..+|.+|..    .+++++|+.+|+++++..+.              .++..+|.++.
T Consensus       222 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  297 (327)
T 3cv0_A          222 PQEALDAYNRALDINPGYVRVMYNMAVSYSN----MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN  297 (327)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence            88888888888764  467788888888887    78888888888888776543              46778888888


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 005877          436 LKGDVGKAFLLYSRMAE  452 (672)
Q Consensus       436 ~~g~~~~A~~~~~~a~~  452 (672)
                      ..|++++|...++++++
T Consensus       298 ~~g~~~~A~~~~~~~l~  314 (327)
T 3cv0_A          298 VMNRPDLVELTYAQNVE  314 (327)
T ss_dssp             HTTCHHHHHHHTTCCSH
T ss_pred             hcCCHHHHHHHHHHHHH
Confidence            89999999888877654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.81  E-value=1.1e-17  Score=171.66  Aligned_cols=232  Identities=14%  Similarity=0.118  Sum_probs=139.1

Q ss_pred             CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC
Q 005877           84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN  159 (672)
Q Consensus        84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~  159 (672)
                      ++...+.+|..++.       .+++++|+..|+++.  .+.++.++..+|.+|..    .+++++|+.+++++..  +.+
T Consensus        20 ~~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~   88 (327)
T 3cv0_A           20 YHENPMEEGLSMLK-------LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKD   88 (327)
T ss_dssp             GSSCHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhHHHHHHHHHHHH-------hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCC
Confidence            45677888988775       589999999999954  56889999999999999    9999999999999987  678


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhc----ccCchhhh-hH-hhhccCChHHHHHHH
Q 005877          160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRI----HNGAEENK-GA-LRKSRGEDDEAFQIL  233 (672)
Q Consensus       160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~-~~-~~~~~g~~~~Ai~~~  233 (672)
                      +.++..+|.+|...|++++|+.+|+++++..+.....       .....    .......+ +. ++...|++++|+..+
T Consensus        89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  161 (327)
T 3cv0_A           89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL-------GSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL  161 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------------------------CCTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH-------HHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence            9999999999999999999999999998754332110       00000    00000001 11 234444455555555


Q ss_pred             HHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 005877          234 EYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHA  309 (672)
Q Consensus       234 ~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a  309 (672)
                      +++.+.  .++.++..+|.+|...     +++++|+.+|+++++.  +++.++..+|.+|..    .+++++|+.+|+++
T Consensus       162 ~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a  232 (327)
T 3cv0_A          162 HAALEMNPNDAQLHASLGVLYNLS-----NNYDSAAANLRRAVELRPDDAQLWNKLGATLAN----GNRPQEALDAYNRA  232 (327)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence            544332  2444455555544444     2455555555544432  334444444444444    44444444444444


Q ss_pred             HHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Q 005877          310 ARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA  347 (672)
Q Consensus       310 ~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~  347 (672)
                      ++.  +++.++..+|.+|..     .|++++|+.+|++++
T Consensus       233 ~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~a~  267 (327)
T 3cv0_A          233 LDINPGYVRVMYNMAVSYSN-----MSQYDLAAKQLVRAI  267 (327)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHH-----hccHHHHHHHHHHHH
Confidence            432  234444444444443     234444444444443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.80  E-value=8.7e-18  Score=179.03  Aligned_cols=266  Identities=12%  Similarity=0.083  Sum_probs=213.1

Q ss_pred             HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccC
Q 005877          125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNI----QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK  198 (672)
Q Consensus       125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~----~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~  198 (672)
                      ..++.+|..+..    .+++++|+.+|+++++  ++++    .++..+|.+|...|++++|+.+|+++++.....     
T Consensus        49 ~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----  119 (411)
T 4a1s_A           49 LELALEGERLCN----AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-----  119 (411)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-----
Confidence            455678888888    8899999999999887  4555    578899999999999999999999988753210     


Q ss_pred             CCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--
Q 005877          199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--  276 (672)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--  276 (672)
                                               +            -.+....++..+|.+|...     +++++|+.+|+++++.  
T Consensus       120 -------------------------~------------~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~  157 (411)
T 4a1s_A          120 -------------------------N------------DRLGEAKSSGNLGNTLKVM-----GRFDEAAICCERHLTLAR  157 (411)
T ss_dssp             -------------------------T------------CHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHH
T ss_pred             -------------------------c------------CchHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH
Confidence                                     0            0122456788888888877     4888888888888763  


Q ss_pred             ------CCHHHHHHHHHHHHcCCCCcCC-----------------HHHHHHHHHHHHHc----C----CHHHHHHHHHHH
Q 005877          277 ------GEPQSMEFLGEIYARGAGVERN-----------------YTKALEWLTHAARQ----Q----LYSAYNGIGYLY  325 (672)
Q Consensus       277 ------~~~~a~~~Lg~~y~~g~g~~~~-----------------~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y  325 (672)
                            ....++..+|.+|..    .++                 +++|+.+|+++++.    +    ...++..+|.+|
T Consensus       158 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  233 (411)
T 4a1s_A          158 QLGDRLSEGRALYNLGNVYHA----KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTY  233 (411)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHH----HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HhhchHHHHHHHHHHHHHHHH----cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                  235688889999888    888                 89999999888753    2    345788899999


Q ss_pred             HcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--------CHH
Q 005877          326 VKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--------HQK  389 (672)
Q Consensus       326 ~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--------~~~  389 (672)
                      ..     .|++++|+.+|+++++.    ++    ..++.++|.+|..    .+++++|+.+|+++++..        ...
T Consensus       234 ~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~  304 (411)
T 4a1s_A          234 YL-----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF----LGQFEDAAEHYKRTLALAVELGEREVEAQ  304 (411)
T ss_dssp             HH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HH-----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            86     67999999999999775    22    3488899999999    899999999999997642        257


Q ss_pred             HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHH
Q 005877          390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--------WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVA  458 (672)
Q Consensus       390 a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a  458 (672)
                      ++..+|.+|..    .+++++|+.+|+++++..+        ..++..+|.++...|++++|+.+|+++++......
T Consensus       305 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  377 (411)
T 4a1s_A          305 SCYSLGNTYTL----LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX  377 (411)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence            88999999988    8999999999999987632        34788899999999999999999999988764443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.79  E-value=6.9e-18  Score=163.47  Aligned_cols=197  Identities=15%  Similarity=0.044  Sum_probs=132.6

Q ss_pred             CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccC
Q 005877          121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK  198 (672)
Q Consensus       121 ~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~  198 (672)
                      |.++.+++.+|.++..    .+++++|+.+|++++.  ++++.+++.+|.++...|++++|+..|+++++.         
T Consensus         2 p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---------   68 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYA----LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR---------   68 (217)
T ss_dssp             --CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred             CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence            4678889999999988    8899999999999886  688999999999999999999999999998773         


Q ss_pred             CCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------ccCHHHHHHHHHH
Q 005877          199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGL------RRDRTKALMWFSK  272 (672)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~------~~~~~~A~~~~~~  272 (672)
                                                             +++++.+++.+|.++.......      .+++++|+..|++
T Consensus        69 ---------------------------------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  109 (217)
T 2pl2_A           69 ---------------------------------------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD  109 (217)
T ss_dssp             ---------------------------------------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHH
Confidence                                                   4457778888888876650000      0267777777777


Q ss_pred             HHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877          273 AAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN  349 (672)
Q Consensus       273 a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~  349 (672)
                      +++  ++++.+++.+|.+|..    .+++++|+..|+++++. +++.++..+|.+|..     .|++++|+.+|+++++.
T Consensus       110 al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~  180 (217)
T 2pl2_A          110 AERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQALALEDTPEIRSALAELYLS-----MGRLDEALAQYAKALEQ  180 (217)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh
Confidence            665  3566677777777766    67777777777776644 456666677776664     45677777777776654


Q ss_pred             --CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH
Q 005877          350 --EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA  382 (672)
Q Consensus       350 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A  382 (672)
                        +++.+++++|.++..    .|++++|+.+|+++
T Consensus       181 ~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          181 APKDLDLRVRYASALLL----KGKAEEAARAAALE  211 (217)
T ss_dssp             STTCHHHHHHHHHHHTC------------------
T ss_pred             CCCChHHHHHHHHHHHH----ccCHHHHHHHHHHH
Confidence              466666777777666    66777776666654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.79  E-value=1.7e-17  Score=175.85  Aligned_cols=281  Identities=14%  Similarity=0.072  Sum_probs=216.2

Q ss_pred             ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhc
Q 005877          123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI  196 (672)
Q Consensus       123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~----~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~  196 (672)
                      ...+++.+|.++..    .+++++|+.+|++++.  +++    ..++..+|.+|...|++++|+.+|+++++......  
T Consensus         8 ~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--   81 (406)
T 3sf4_A            8 SCLELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--   81 (406)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--
Confidence            45567888999888    8899999999999887  455    36788899999999999999999999877532110  


Q ss_pred             cCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc
Q 005877          197 SKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK  276 (672)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~  276 (672)
                                                              -.+..+.++..+|.+|...     +++++|+.+|+++++.
T Consensus        82 ----------------------------------------~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~  116 (406)
T 3sf4_A           82 ----------------------------------------DQLGEAKASGNLGNTLKVL-----GNFDEAIVCCQRHLDI  116 (406)
T ss_dssp             ----------------------------------------CHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------ccHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHH
Confidence                                                    0112356777788888777     3888888888887763


Q ss_pred             ----CC----HHHHHHHHHHHHcCCCCcCC--------------------HHHHHHHHHHHHHc----C----CHHHHHH
Q 005877          277 ----GE----PQSMEFLGEIYARGAGVERN--------------------YTKALEWLTHAARQ----Q----LYSAYNG  320 (672)
Q Consensus       277 ----~~----~~a~~~Lg~~y~~g~g~~~~--------------------~~~A~~~~~~a~~~----~----~~~a~~~  320 (672)
                          ++    +.++..+|.+|..    .++                    +++|+.+|+++++.    +    ...++..
T Consensus       117 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  192 (406)
T 3sf4_A          117 SRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGN  192 (406)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence                22    5578888888887    788                    88888888888753    2    2456788


Q ss_pred             HHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC-
Q 005877          321 IGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH-  387 (672)
Q Consensus       321 Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~-  387 (672)
                      +|.+|..     .|++++|+.+|+++++.    ++    +.++.++|.+|..    .+++++|+.+|+++++.    ++ 
T Consensus       193 la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~  263 (406)
T 3sf4_A          193 LGNTHYL-----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLKDR  263 (406)
T ss_dssp             HHHHHHH-----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHH-----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCcCc
Confidence            8888875     56899999999988764    22    3478899999988    89999999999998753    22 


Q ss_pred             ---HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 005877          388 ---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL---  453 (672)
Q Consensus       388 ---~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~---  453 (672)
                         ..++..+|.+|..    .+++++|+.+|+++++..    +    ..++..+|.++...|++++|+.+|+++++.   
T Consensus       264 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  339 (406)
T 3sf4_A          264 AVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  339 (406)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence               5678899999987    899999999999987753    2    346788999999999999999999999655   


Q ss_pred             -C----CHHHHHHHHHHHHHhCC
Q 005877          454 -G----YEVAQSNAAWILDKYGE  471 (672)
Q Consensus       454 -g----~~~a~~nla~~l~~~~~  471 (672)
                       +    ...++.+++.++...|.
T Consensus       340 ~~~~~~~~~~~~~l~~~~~~~g~  362 (406)
T 3sf4_A          340 VGDKSGELTARLNLSDLQMVLGL  362 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCCcchhHHHHHHHHHHHHhhH
Confidence             2    35567778888877543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.79  E-value=1.7e-17  Score=176.77  Aligned_cols=268  Identities=17%  Similarity=0.193  Sum_probs=213.4

Q ss_pred             CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCH----HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 005877          241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEP----QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--  312 (672)
Q Consensus       241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--  312 (672)
                      ....++.+|..++..     +++++|+.+|+++++.  +++    .++..+|.+|..    .+++++|+.+|+++++.  
T Consensus        47 ~~~~l~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~  117 (411)
T 4a1s_A           47 MCLELALEGERLCNA-----GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY----LGDYNKAMQYHKHDLTLAK  117 (411)
T ss_dssp             HHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence            345677889998888     4999999999999874  444    588999999998    89999999999999864  


Q ss_pred             ------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCCchhc-------
Q 005877          313 ------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------EEAGGHYNLGVMYYKGIGVKRD-------  371 (672)
Q Consensus       313 ------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~-------  371 (672)
                            ..+.++..+|.+|..     .|++++|+.+|+++++.        ....++.++|.+|..    .++       
T Consensus       118 ~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~  188 (411)
T 4a1s_A          118 SMNDRLGEAKSSGNLGNTLKV-----MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA----KGKHLGQRNP  188 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHHHHHHST
T ss_pred             HccCchHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----cCcccccccc
Confidence                  245678899999986     67999999999999765        235688899999998    889       


Q ss_pred             ----------HHHHHHHHHHHHHc----C----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--------hh
Q 005877          372 ----------VKLACKYFLVAANA----G----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--------WS  425 (672)
Q Consensus       372 ----------~~~A~~~~~~A~~~----~----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------~~  425 (672)
                                +++|+.+|+++++.    +    ...++.++|.+|..    .+++++|+.+|+++++..+        ..
T Consensus       189 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~  264 (411)
T 4a1s_A          189 GKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYL----LGDFQAAIEHHQERLRIAREFGDRAAERR  264 (411)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence                      99999999998763    2    24578888988887    8899999999999877642        12


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHH
Q 005877          426 SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEH  505 (672)
Q Consensus       426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  505 (672)
                      ++..+|.++...|++++|+.+|+++++......                            +            ......
T Consensus       265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------~------------~~~~~~  304 (411)
T 4a1s_A          265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG----------------------------E------------REVEAQ  304 (411)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT----------------------------C------------HHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC----------------------------C------------HHHHHH
Confidence            677888888888888888888888865421000                            0            001145


Q ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          506 AALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----SN----AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       506 a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      ++..+|.+|.    ..+++++|+.+++++++.    ++    ..++.+||.+|..    .|++++|+.+|++|+++.+..
T Consensus       305 ~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          305 SCYSLGNTYT----LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA----IGGHERALKYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhhc
Confidence            7788999999    889999999999999763    22    5689999999988    899999999999999998764


Q ss_pred             c
Q 005877          578 K  578 (672)
Q Consensus       578 ~  578 (672)
                      .
T Consensus       377 ~  377 (411)
T 4a1s_A          377 X  377 (411)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.79  E-value=7.9e-18  Score=178.45  Aligned_cols=270  Identities=17%  Similarity=0.141  Sum_probs=189.1

Q ss_pred             CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 005877          241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--  312 (672)
Q Consensus       241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--  312 (672)
                      ...+++.+|..++..     +++++|+.+|+++++.  ++    ..++..+|.+|..    .+++++|+.+|+++++.  
T Consensus         8 ~~~~l~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~   78 (406)
T 3sf4_A            8 SCLELALEGERLCKS-----GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLAR   78 (406)
T ss_dssp             CHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHH
Confidence            345566777777766     3777777777777663  33    3566777777777    77777777777777643  


Q ss_pred             --C----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhc-------
Q 005877          313 --Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRD-------  371 (672)
Q Consensus       313 --~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~-------  371 (672)
                        +    .+.++..+|.+|..     .|++++|+.+|+++++.    ++    +.++.++|.+|..    .++       
T Consensus        79 ~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~  149 (406)
T 3sf4_A           79 TIGDQLGEAKASGNLGNTLKV-----LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGP  149 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC----
T ss_pred             hccccHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCccccccc
Confidence              1    24566777777765     46777787777777654    22    4577788888877    777       


Q ss_pred             -------------HHHHHHHHHHHHHc----C----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-------
Q 005877          372 -------------VKLACKYFLVAANA----G----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-------  423 (672)
Q Consensus       372 -------------~~~A~~~~~~A~~~----~----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------  423 (672)
                                   +++|+.+|+++++.    +    ...++.++|.+|..    .+++++|+.+++++++..+       
T Consensus       150 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~  225 (406)
T 3sf4_A          150 QDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAA  225 (406)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHH
Confidence                         88888888877652    1    23567778888776    7888888888888876531       


Q ss_pred             -hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C----HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHH
Q 005877          424 -WSSLSRWALESYLKGDVGKAFLLYSRMAELG----Y----EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL  494 (672)
Q Consensus       424 -~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g----~----~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~  494 (672)
                       ..++..+|.++...|++++|+.+++++++..    +    ..++.++|.++..                .+++++|+.+
T Consensus       226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~A~~~  289 (406)
T 3sf4_A          226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL----------------LQDYEKAIDY  289 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH----------------hCcHHHHHHH
Confidence             1267778888888888888888888886542    1    4456677777766                5677777777


Q ss_pred             HHHHHhC----CC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHc
Q 005877          495 WWQASEQ----GN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----S----NAQAMFNLGYMHEH  552 (672)
Q Consensus       495 ~~~a~~~----~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~----~~~a~~~Lg~~y~~  552 (672)
                      ++++.+.    ++    ..++..+|.+|.    ..+++++|+.+|+++++.    +    ...++..||.+|..
T Consensus       290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  359 (406)
T 3sf4_A          290 HLKHLAIAQELNDRIGEGRACWSLGNAYT----ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV  359 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence            7765432    22    557778999998    889999999999998753    2    25678888888755

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.79  E-value=1.3e-17  Score=166.87  Aligned_cols=237  Identities=17%  Similarity=0.172  Sum_probs=164.7

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH
Q 005877          159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ  238 (672)
Q Consensus       159 ~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~  238 (672)
                      |++.++.+|.++...|++++|+.+|+++++..                                                
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------------------------------------   33 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK------------------------------------------------   33 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------------------------------------
Confidence            34566777777777777777777777776532                                                


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-
Q 005877          239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-  312 (672)
Q Consensus       239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-  312 (672)
                      +.++.+++.+|.+|...     +++++|+++|+++++..     .+.++..+|.+|..    .+++++|+.+|+++++. 
T Consensus        34 p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~a~~~~  104 (272)
T 3u4t_A           34 YNSPYIYNRRAVCYYEL-----AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK----KGQDSLAIQQYQAAVDRD  104 (272)
T ss_dssp             CCCSTTHHHHHHHHHHT-----TCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             CCcHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcC
Confidence            23555677777777766     37777777777777631     24557777777777    77778888888777764 


Q ss_pred             -CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH-HHHHcCCCchhcHHHHHHHHHHHHHc--C
Q 005877          313 -QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG-VMYYKGIGVKRDVKLACKYFLVAANA--G  386 (672)
Q Consensus       313 -~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg-~~y~~g~g~~~~~~~A~~~~~~A~~~--~  386 (672)
                       .++.++..+|.+|..     .|++++|+.+|+++++.  .++.+++++| .+|..     +++++|+.+|+++++.  .
T Consensus       105 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~p~  174 (272)
T 3u4t_A          105 TTRLDMYGQIGSYFYN-----KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-----KEYVKADSSFVKVLELKPN  174 (272)
T ss_dssp             TTCTHHHHHHHHHHHH-----TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHSTT
T ss_pred             cccHHHHHHHHHHHHH-----ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCcc
Confidence             466777778887775     56788888888887765  4677778888 66665     3788888888887764  3


Q ss_pred             CHHHHHHHHHHHHcCCCccCC---HHHHHHHHHHHHHcC---Ch-------hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          387 HQKAFYQLAKMFHTGVGLKKN---LHMATALYKLVAERG---PW-------SSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       387 ~~~a~~~L~~~y~~g~g~~~~---~~~A~~~~~~a~~~~---~~-------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      +..+++++|.++..    .++   +++|+.+|+++++..   +.       .++..+|..+...|++++|+.+|+++++.
T Consensus       175 ~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          175 IYIGYLWRARANAA----QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             CHHHHHHHHHHHHH----HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHH----cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            56777778877765    444   777888888877653   22       46777888888888888888888888554


Q ss_pred             --CCHHHHHHHHHHH
Q 005877          454 --GYEVAQSNAAWIL  466 (672)
Q Consensus       454 --g~~~a~~nla~~l  466 (672)
                        +++.+.-.++.+.
T Consensus       251 ~p~~~~a~~~l~~~~  265 (272)
T 3u4t_A          251 DPTNKKAIDGLKMKL  265 (272)
T ss_dssp             CTTCHHHHHHHC---
T ss_pred             CccHHHHHHHhhhhh
Confidence              5667665555443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.79  E-value=8.1e-18  Score=168.29  Aligned_cols=227  Identities=16%  Similarity=0.099  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-----CH
Q 005877          280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EA  352 (672)
Q Consensus       280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-----~~  352 (672)
                      .+++.+|.++..    .+++++|+.+|+++++..  ++.++..+|.+|..     .+++++|+.+|+++++..     .+
T Consensus         4 ~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~   74 (272)
T 3u4t_A            4 DVEFRYADFLFK----NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-----LAKYDLAQKDIETYFSKVNATKAKS   74 (272)
T ss_dssp             -CHHHHHHHHHT----TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-----TTCHHHHHHHHHHHHTTSCTTTCCH
T ss_pred             HHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHhccCchhHHH
Confidence            344455555555    555555555555555432  34445555555543     345555555555555421     12


Q ss_pred             HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHH
Q 005877          353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRW  430 (672)
Q Consensus       353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l  430 (672)
                      .+++.+|.+|..    .+++++|+.+|+++++.  .++.++..+|.+|..    .+++++|+.+|+++++..        
T Consensus        75 ~~~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~--------  138 (272)
T 3u4t_A           75 ADFEYYGKILMK----KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAIQYMEKQIRPT--------  138 (272)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHGGGCCSS--------
T ss_pred             HHHHHHHHHHHH----cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhcC--------
Confidence            334555555555    45555555555555442  234444555555444    445555555554444433        


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHH
Q 005877          431 ALESYLKGDVGKAFLLYSRMAELGYEVAQSNAA-WILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAA  507 (672)
Q Consensus       431 g~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla-~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~  507 (672)
                                            +.+..++.++| .++..                 +++++|+..+++++  .+.++.++
T Consensus       139 ----------------------~~~~~~~~~l~~~~~~~-----------------~~~~~A~~~~~~a~~~~p~~~~~~  179 (272)
T 3u4t_A          139 ----------------------TTDPKVFYELGQAYYYN-----------------KEYVKADSSFVKVLELKPNIYIGY  179 (272)
T ss_dssp             ----------------------CCCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             ----------------------CCcHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhCccchHHH
Confidence                                  22344444444 33321                 14444444444432  23445666


Q ss_pred             HHHHHHHHhCCCCCCC---HHHHHHHHHHHHhc----CC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Q 005877          508 LLIGDAYYYGRGTQRD---YERAAEAYMHARSQ----SN------AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVD  574 (672)
Q Consensus       508 ~~lG~~y~~g~g~~~d---~~~A~~~~~~A~~~----~~------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  574 (672)
                      +.+|.++.    ..++   +++|+.+|+++++.    .+      ..++..||.+|..    .+|+++|+++|+++++++
T Consensus       180 ~~~~~~~~----~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          180 LWRARANA----AQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI----NRDKVKADAAWKNILALD  251 (272)
T ss_dssp             HHHHHHHH----HHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH----HcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence            67777776    3444   77777888777653    12      2577778888776    778888888888888888


Q ss_pred             CCCc
Q 005877          575 PAAK  578 (672)
Q Consensus       575 ~~~~  578 (672)
                      |+..
T Consensus       252 p~~~  255 (272)
T 3u4t_A          252 PTNK  255 (272)
T ss_dssp             TTCH
T ss_pred             ccHH
Confidence            7753

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.78  E-value=1.3e-17  Score=161.61  Aligned_cols=158  Identities=16%  Similarity=0.033  Sum_probs=81.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc-----------CCHHHHHHH
Q 005877          239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVE-----------RNYTKALEW  305 (672)
Q Consensus       239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~-----------~~~~~A~~~  305 (672)
                      ++++.+++.+|.++...     +++++|+..|+++++  ++++.+++.+|.+|..    .           +++++|+..
T Consensus        36 p~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~~~~~~~~~~~~g~~~~A~~~  106 (217)
T 2pl2_A           36 PQDPEALYWLARTQLKL-----GLVNPALENGKTLVARTPRYLGGYMVLSEAYVA----LYRQAEDRERGKGYLEQALSV  106 (217)
T ss_dssp             SSCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHTCSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hhhhhhhhcccccCHHHHHHH
Confidence            45666666667666665     366667777766655  3566666666666665    5           555555555


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHH
Q 005877          306 LTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA  382 (672)
Q Consensus       306 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A  382 (672)
                      |+++++.  +++.++..+|.+|..     .|++++|+.+|+++++. +++.+++++|.+|..    .+++++|+.+|+++
T Consensus       107 ~~~al~~~P~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a  177 (217)
T 2pl2_A          107 LKDAERVNPRYAPLHLQRGLVYAL-----LGERDKAEASLKQALALEDTPEIRSALAELYLS----MGRLDEALAQYAKA  177 (217)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHH-----cCChHHHHHHHHHHHhcccchHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence            5555543  345555555555553     34555555555555433 345555555555555    55555555555555


Q ss_pred             HH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHH
Q 005877          383 AN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV  418 (672)
Q Consensus       383 ~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a  418 (672)
                      ++  ++++.++.++|.++..    .+++++|+.+|+++
T Consensus       178 l~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          178 LEQAPKDLDLRVRYASALLL----KGKAEEAARAAALE  211 (217)
T ss_dssp             HHHSTTCHHHHHHHHHHHTC------------------
T ss_pred             HHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHH
Confidence            44  2344555555555544    45555555554443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.78  E-value=1.6e-15  Score=174.67  Aligned_cols=363  Identities=10%  Similarity=0.042  Sum_probs=261.1

Q ss_pred             hhhHHHHHHHHHHHHhC-----CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHH
Q 005877          105 VRVMEEATSEVESAAME-----GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKA  179 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A  179 (672)
                      .+++.+|+..|+++.-.     .|...+..|......     -|..+...+..+.-...    .-.+|.++...|.+++|
T Consensus       998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIk-----aD~~Rv~eyI~kLd~~d----~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A          998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIK-----ADRTRVMEYINRLDNYD----APDIANIAISNELFEEA 1068 (1630)
T ss_pred             CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHH-----hChhhHHHHHHHhhhcc----HHHHHHHHHhCCCHHHH
Confidence            57788888888886522     233455545444332     14455555544433211    23388899999999999


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005877          180 VKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGL  259 (672)
Q Consensus       180 ~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~  259 (672)
                      ...|+++....                       .....+....+++++|+++.++.   .++.+++.+|..+...+   
T Consensus      1069 f~IYkKa~~~~-----------------------~A~~VLie~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G--- 1119 (1630)
T 1xi4_A         1069 FAIFRKFDVNT-----------------------SAVQVLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKG--- 1119 (1630)
T ss_pred             HHHHHHcCCHH-----------------------HHHHHHHHHHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCC---
Confidence            99999863211                       11333444778888888888754   67999999999998884   


Q ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHHH
Q 005877          260 RRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTK  338 (672)
Q Consensus       260 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~~  338 (672)
                        ++++|++.|.+|   +++.++..+|..+..    .+++++|+++|+.|.+.. ++.....+|..|..     .+++++
T Consensus      1120 --~~kEAIdsYiKA---dD~say~eVa~~~~~----lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK-----l~rlee 1185 (1630)
T 1xi4_A         1120 --MVKEAIDSYIKA---DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETELIFALAK-----TNRLAE 1185 (1630)
T ss_pred             --CHHHHHHHHHhc---CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcccccccHHHHHHHHh-----hcCHHH
Confidence              999999999876   889999999999998    899999999999988764 33455568888875     346653


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHH
Q 005877          339 AKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV  418 (672)
Q Consensus       339 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a  418 (672)
                       ++.|   ++..+...+.++|..+..    .+++++|..+|.++      ..+..++.+|..    .+++++|++.+++|
T Consensus      1186 -le~f---I~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~tLvk----Lge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1186 -LEEF---INGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLASTLVH----LGEYQAAVDGARKA 1247 (1630)
T ss_pred             -HHHH---HhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHHHHHH----hCCHHHHHHHHHHh
Confidence             4444   344566777789999998    89999999999986      477888988887    78899999999988


Q ss_pred             HHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH
Q 005877          419 AERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA  498 (672)
Q Consensus       419 ~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  498 (672)
                         +++.++...+.++...|++..|..+... + .-++.....++..|..                .+.+++|+.+++++
T Consensus      1248 ---~n~~aWkev~~acve~~Ef~LA~~cgl~-I-iv~~deLeeli~yYe~----------------~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A         1248 ---NSTRTWKEVCFACVDGKEFRLAQMCGLH-I-VVHADELEELINYYQD----------------RGYFEELITMLEAA 1306 (1630)
T ss_pred             ---CCHHHHHHHHHHHhhhhHHHHHHHHHHh-h-hcCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHH
Confidence               5567778888888888888888887763 2 2244555567777766                66788888888888


Q ss_pred             HhCCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHcCCCCCCCHHHHH
Q 005877          499 SEQGNEH--AALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-------SNAQAMFNLGYMHEHGQGLPLDLHLAK  564 (672)
Q Consensus       499 ~~~~~~~--a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~~~a~~~Lg~~y~~g~g~~~d~~~A~  564 (672)
                      +..+++.  .+..||.+|..=  .+++..+++++|...+..       .++..+..+..+|.+    -+++++|+
T Consensus      1307 L~LeraH~gmftELaiLyaKy--~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~----~~e~dnA~ 1375 (1630)
T 1xi4_A         1307 LGLERAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK----YEEYDNAI 1375 (1630)
T ss_pred             hccChhHhHHHHHHHHHHHhC--CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHh----cccHHHHH
Confidence            7666543  344577777632  567777788888776553       356667777777776    56777777

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=5.5e-17  Score=160.37  Aligned_cols=220  Identities=13%  Similarity=0.057  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--C----
Q 005877          279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E----  351 (672)
Q Consensus       279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~----  351 (672)
                      +.++..+|.++..    .+++++|+.+|+++++. .++.++..+|.+|..     .+++++|+.+|+++++..  +    
T Consensus         5 a~~~~~~g~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~   75 (258)
T 3uq3_A            5 ADKEKAEGNKFYK----ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYE-----KGEYETAISTLNDAVEQGREMRADY   75 (258)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHHH----hccHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHhCcccccch
Confidence            3445555555555    55555555555555433 244455555555543     345555555555554431  1    


Q ss_pred             ---HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHH
Q 005877          352 ---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS  428 (672)
Q Consensus       352 ---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~  428 (672)
                         +.+++.+|.+|..    .+++++|+.+|+++++..+.      +.++..    .+++++|+..++++++..+.    
T Consensus        76 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~------~~~~~~----~~~~~~a~~~~~~~~~~~~~----  137 (258)
T 3uq3_A           76 KVISKSFARIGNAYHK----LGDLKKTIEYYQKSLTEHRT------ADILTK----LRNAEKELKKAEAEAYVNPE----  137 (258)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCC------HHHHHH----HHHHHHHHHHHHHHHHCCHH----
T ss_pred             HHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCch------hHHHHH----HhHHHHHHHHHHHHHHcCcc----
Confidence               3445555555555    55555555555555443221      112222    33444455555554444321    


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHH
Q 005877          429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHA  506 (672)
Q Consensus       429 ~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a  506 (672)
                                                +..++.++|.++..                .+++++|+.++++++  .+.++.+
T Consensus       138 --------------------------~~~~~~~~~~~~~~----------------~~~~~~A~~~~~~a~~~~~~~~~~  175 (258)
T 3uq3_A          138 --------------------------KAEEARLEGKEYFT----------------KSDWPNAVKAYTEMIKRAPEDARG  175 (258)
T ss_dssp             --------------------------HHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             --------------------------hHHHHHHHHHHHHH----------------hcCHHHHHHHHHHHHhcCcccHHH
Confidence                                      33334444444444                344555555555443  3456778


Q ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877          507 ALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP  575 (672)
Q Consensus       507 ~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  575 (672)
                      ++.+|.+|.    ..+++++|+.+++++++  ++++.+++.+|.+|..    .|++++|+.+|+++++++|
T Consensus       176 ~~~l~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~  238 (258)
T 3uq3_A          176 YSNRAAALA----KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA----VKEYASALETLDAARTKDA  238 (258)
T ss_dssp             HHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCh
Confidence            889999998    88999999999999976  4678999999999987    8999999999999999873

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.77  E-value=7.8e-17  Score=163.48  Aligned_cols=245  Identities=11%  Similarity=0.081  Sum_probs=157.4

Q ss_pred             CHHHHHHHHHHHHHcC--C-HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHH
Q 005877          262 DRTKALMWFSKAADKG--E-PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTK  338 (672)
Q Consensus       262 ~~~~A~~~~~~a~~~~--~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~  338 (672)
                      ++++|+.++++.....  + ..+...++.+|..    .|+++.|+..++.. ......++..++..+..     .++.++
T Consensus        14 ~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~----~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~-----~~~~~~   83 (291)
T 3mkr_A           14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLA----QRKYGVVLDEIKPS-SAPELQAVRMFAEYLAS-----HSRRDA   83 (291)
T ss_dssp             CHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH----TTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHC-----STTHHH
T ss_pred             HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHH----CCCHHHHHHHhccc-CChhHHHHHHHHHHHcC-----CCcHHH
Confidence            6666666666543321  1 2355666666666    66666666655442 22233455556666653     346677


Q ss_pred             HHHHHHHHHhC----CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHH
Q 005877          339 AKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATAL  414 (672)
Q Consensus       339 A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~  414 (672)
                      |++.+++.+..    +++.+++.+|.++..    .|++++|+.+|++   .+++.++..+|.++..    .++.++|+..
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~----~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~----~g~~~~A~~~  152 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFY----DQNPDAALRTLHQ---GDSLECMAMTVQILLK----LDRLDLARKE  152 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHH----TTCHHHHHHHHTT---CCSHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHH----CCCHHHHHHHHhC---CCCHHHHHHHHHHHHH----CCCHHHHHHH
Confidence            77777666543    356666677777766    6677777776666   5566666666666665    5666666666


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHH
Q 005877          415 YKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL  494 (672)
Q Consensus       415 ~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~  494 (672)
                      |+++++..|......++..+...                            +..                .+++++|+..
T Consensus       153 l~~~~~~~p~~~~~~l~~a~~~l----------------------------~~~----------------~~~~~eA~~~  188 (291)
T 3mkr_A          153 LKKMQDQDEDATLTQLATAWVSL----------------------------AAG----------------GEKLQDAYYI  188 (291)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHH----------------------------HHC----------------TTHHHHHHHH
T ss_pred             HHHHHhhCcCcHHHHHHHHHHHH----------------------------HhC----------------chHHHHHHHH
Confidence            66666655444333333221110                            000                2455666666


Q ss_pred             HHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHH-HHHHHHHH
Q 005877          495 WWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLH-LAKRYYDQ  569 (672)
Q Consensus       495 ~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~-~A~~~~~~  569 (672)
                      |++++  .++++.+++++|.++.    ..+++++|+.+|+++++  ++++.+++++|.++..    .|+.. .+.+++++
T Consensus       189 ~~~~l~~~p~~~~~~~~la~~~~----~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~----~g~~~eaa~~~~~~  260 (291)
T 3mkr_A          189 FQEMADKCSPTLLLLNGQAACHM----AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH----LGKPPEVTNRYLSQ  260 (291)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHH
Confidence            66543  3567888899999999    88999999999999976  5789999999998877    55665 46799999


Q ss_pred             HHhcCCCCcc
Q 005877          570 ALEVDPAAKL  579 (672)
Q Consensus       570 A~~~~~~~~~  579 (672)
                      +++++|+...
T Consensus       261 ~~~~~P~~~~  270 (291)
T 3mkr_A          261 LKDAHRSHPF  270 (291)
T ss_dssp             HHHHCTTCHH
T ss_pred             HHHhCCCChH
Confidence            9999998754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.77  E-value=1.2e-16  Score=164.07  Aligned_cols=262  Identities=13%  Similarity=0.074  Sum_probs=205.6

Q ss_pred             HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccC
Q 005877          125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK  198 (672)
Q Consensus       125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~----~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~  198 (672)
                      ..++..|..+..    .+++++|+.+|+++++  +++    ..++..+|.+|...|++++|+.+++++++......    
T Consensus         6 ~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----   77 (338)
T 3ro2_A            6 LELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG----   77 (338)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHH----hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc----
Confidence            456677888888    8899999999999886  455    36788899999999999999999999877532110    


Q ss_pred             CCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--
Q 005877          199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--  276 (672)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--  276 (672)
                                                            -.+..+.++..+|.+|...     +++++|+.+|+++++.  
T Consensus        78 --------------------------------------~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~  114 (338)
T 3ro2_A           78 --------------------------------------DQLGEAKASGNLGNTLKVL-----GNFDEAIVCCQRHLDISR  114 (338)
T ss_dssp             --------------------------------------CHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------ccHHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHH
Confidence                                                  0112356777888888777     4888888888888763  


Q ss_pred             --CC----HHHHHHHHHHHHcCCCCcCC--------------------HHHHHHHHHHHHHc----C----CHHHHHHHH
Q 005877          277 --GE----PQSMEFLGEIYARGAGVERN--------------------YTKALEWLTHAARQ----Q----LYSAYNGIG  322 (672)
Q Consensus       277 --~~----~~a~~~Lg~~y~~g~g~~~~--------------------~~~A~~~~~~a~~~----~----~~~a~~~Lg  322 (672)
                        ++    ..++..+|.+|..    .++                    +++|+.+++++++.    +    .+.++..+|
T Consensus       115 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~  190 (338)
T 3ro2_A          115 ELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLG  190 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence              33    4578888888887    788                    88888888888753    2    245788889


Q ss_pred             HHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC---
Q 005877          323 YLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH---  387 (672)
Q Consensus       323 ~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~---  387 (672)
                      .+|..     .+++++|+.+++++++.    ++    ..++.++|.+|..    .+++++|+.+|+++++.    ++   
T Consensus       191 ~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~  261 (338)
T 3ro2_A          191 NTHYL-----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLKDRAV  261 (338)
T ss_dssp             HHHHH-----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHH-----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhcchhH
Confidence            88885     57999999999998764    22    3478899999998    89999999999998763    22   


Q ss_pred             -HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          388 -QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       388 -~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                       ..++..+|.++..    .+++++|+.+++++++..    +    ..++..+|.++...|++++|..+++++++..
T Consensus       262 ~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          262 EAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence             5688899999987    899999999999998763    2    3367889999999999999999999998763

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.76  E-value=7e-17  Score=165.80  Aligned_cols=254  Identities=19%  Similarity=0.230  Sum_probs=154.9

Q ss_pred             HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC------
Q 005877          282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN------  349 (672)
Q Consensus       282 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~------  349 (672)
                      ++..|..+..    .+++++|+.+|+++++..  +    ..++..+|.+|..     .+++++|+.+++++++.      
T Consensus         8 l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~   78 (338)
T 3ro2_A            8 LALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-----LHDYAKALEYHHHDLTLARTIGD   78 (338)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHH----hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHhhcccc
Confidence            3444555555    555555555555555432  2    2344555555553     34555555555555433      


Q ss_pred             --CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCccCC------------
Q 005877          350 --EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKN------------  407 (672)
Q Consensus       350 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~~~------------  407 (672)
                        ..+.++..+|.+|..    .+++++|+.+|+++++.    ++    ..++..+|.+|..    .++            
T Consensus        79 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~  150 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKV----LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGE  150 (338)
T ss_dssp             HHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----
T ss_pred             cHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhh
Confidence              123455555665555    55666666666555442    11    2355555555554    455            


Q ss_pred             --------HHHHHHHHHHHHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC----HHHHHHHH
Q 005877          408 --------LHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GY----EVAQSNAA  463 (672)
Q Consensus       408 --------~~~A~~~~~~a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~----g~----~~a~~nla  463 (672)
                              +++|+.+++++++..    +    ..++..+|.++...|++++|+.+++++++.    ++    ..++.++|
T Consensus       151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~  230 (338)
T 3ro2_A          151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG  230 (338)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence                    566666666554431    1    224555666666666666666666666433    11    22555666


Q ss_pred             HHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh----CCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005877          464 WILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE----QGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHAR  535 (672)
Q Consensus       464 ~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~  535 (672)
                      .++..                .+++++|+.+++++.+    .++    ..+++.+|.+|.    ..+++++|+.++++++
T Consensus       231 ~~~~~----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~a~  290 (338)
T 3ro2_A          231 NAYIF----------------LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT----LLQDYEKAIDYHLKHL  290 (338)
T ss_dssp             HHHHH----------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHH
T ss_pred             HHHHH----------------cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHH
Confidence            66655                5566666666665432    222    567789999999    8999999999999997


Q ss_pred             hc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          536 SQ----SN----AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       536 ~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      +.    ++    ..++..||.+|..    .|++++|..++++++++.+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          291 AIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHC---
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHh
Confidence            63    33    5688999999987    89999999999999998654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.76  E-value=5.2e-15  Score=170.54  Aligned_cols=356  Identities=12%  Similarity=0.045  Sum_probs=275.0

Q ss_pred             CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC-----CCHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHhh
Q 005877          121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-----GNIQSKMAVAY--TYLRQDMHDKAVKLYAELAEIAVNS  193 (672)
Q Consensus       121 ~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-----~~~~a~~~Lg~--~y~~~~~~~~A~~~y~~a~~~~~~~  193 (672)
                      ..+|+---.....|..    .+++.+|++.|++++..     .|......|..  +....++..+.+.-+++..      
T Consensus       982 ~~~PeeVs~~vKaf~~----aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d------ 1051 (1630)
T 1xi4_A          982 TQDPEEVSVTVKAFMT----ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD------ 1051 (1630)
T ss_pred             ccCHHHhHHHHHHHHh----CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc------
Confidence            3566666777777777    88999999999998843     33444444443  3333333333333333221      


Q ss_pred             hhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHH
Q 005877          194 FLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKA  273 (672)
Q Consensus       194 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a  273 (672)
                                         ...+|.+....|.+++|+.+|++..  ....+.   ..++...     +++++|++++++.
T Consensus      1052 -------------------~~eIA~Iai~lglyEEAf~IYkKa~--~~~~A~---~VLie~i-----~nldrAiE~Aerv 1102 (1630)
T 1xi4_A         1052 -------------------APDIANIAISNELFEEAFAIFRKFD--VNTSAV---QVLIEHI-----GNLDRAYEFAERC 1102 (1630)
T ss_pred             -------------------HHHHHHHHHhCCCHHHHHHHHHHcC--CHHHHH---HHHHHHH-----hhHHHHHHHHHhc
Confidence                               1237889999999999999999963  222221   2222233     5899999999865


Q ss_pred             HHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CH
Q 005877          274 ADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EA  352 (672)
Q Consensus       274 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~  352 (672)
                         ..+.+++.+|..+..    .+++++|+..|.+|   +++.++..++.++..     .|++++|+++|+.|.+.. ++
T Consensus      1103 ---n~p~vWsqLAKAql~----~G~~kEAIdsYiKA---dD~say~eVa~~~~~-----lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A         1103 ---NEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANT-----SGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred             ---CCHHHHHHHHHHHHh----CCCHHHHHHHHHhc---CChHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhcccc
Confidence               779999999999999    99999999999886   899999999999986     679999999999998765 44


Q ss_pred             HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005877          353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWAL  432 (672)
Q Consensus       353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~  432 (672)
                      .+...+|.+|.+    .+++++ ++.|.   +..+...+..+|..++.    .+++++|+.+|+++      ..+..++.
T Consensus      1168 ~Idt~LafaYAK----l~rlee-le~fI---~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~ 1229 (1630)
T 1xi4_A         1168 YVETELIFALAK----TNRLAE-LEEFI---NGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLAS 1229 (1630)
T ss_pred             cccHHHHHHHHh----hcCHHH-HHHHH---hCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHH
Confidence            455679999998    777774 55553   44566778899999998    99999999999997      47889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005877          433 ESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGD  512 (672)
Q Consensus       433 ~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~  512 (672)
                      .+...|++++|++.+++|   ++..++.+.+..+..                .+++..|..+...  -..+++-+..++.
T Consensus      1230 tLvkLge~q~AIEaarKA---~n~~aWkev~~acve----------------~~Ef~LA~~cgl~--Iiv~~deLeeli~ 1288 (1630)
T 1xi4_A         1230 TLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVD----------------GKEFRLAQMCGLH--IVVHADELEELIN 1288 (1630)
T ss_pred             HHHHhCCHHHHHHHHHHh---CCHHHHHHHHHHHhh----------------hhHHHHHHHHHHh--hhcCHHHHHHHHH
Confidence            999999999999999998   667888888777655                6778888877653  3346777779999


Q ss_pred             HHHhCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877          513 AYYYGRGTQRDYERAAEAYMHARSQS--NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP  575 (672)
Q Consensus       513 ~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  575 (672)
                      +|.    ..|.+++|+.++++++..+  +......||.+|.+.  .+++..+++++|...+++.+
T Consensus      1289 yYe----~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy--~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A         1289 YYQ----DRGYFEELITMLEAALGLERAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred             HHH----HcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC--CHHHHHHHHHHHHHhcccch
Confidence            998    8999999999999998764  555667799999774  38899999999998887765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.76  E-value=4e-17  Score=171.55  Aligned_cols=174  Identities=12%  Similarity=0.051  Sum_probs=122.3

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC-HHHHHHHHHHHHhC--CC
Q 005877          277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKN-YTKAKEYFEKAADN--EE  351 (672)
Q Consensus       277 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~-~~~A~~~~~~a~~~--~~  351 (672)
                      +++.++..+|.++..    .+++++|+..|+++++.  ++..+++.+|.++..     .++ +++|+.+|+++++.  ++
T Consensus        95 ~~~~a~~~lg~~~~~----~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~-----~g~d~~eAl~~~~~al~l~P~~  165 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQR----DERSERAFKLTRDAIELNAANYTVWHFRRVLLKS-----LQKDLHEEMNYITAIIEEQPKN  165 (382)
T ss_dssp             HHHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHCTTC
T ss_pred             hhHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-----cccCHHHHHHHHHHHHHHCCCC
Confidence            346677777777777    77788888888887765  477778888888775     444 88888888888765  47


Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL  427 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~  427 (672)
                      +.+++++|.++..    .+++++|+..|+++++.  .+..+++++|.++..    .+++++|+.+|+++++..+  ..++
T Consensus       166 ~~a~~~~g~~~~~----~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l~P~~~~a~  237 (382)
T 2h6f_A          166 YQVWHHRRVLVEW----LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVW  237 (382)
T ss_dssp             HHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHH
Confidence            7788888888877    77888888888887764  467778888888776    7777778888887777763  5567


Q ss_pred             HHHHHHHHh-cCCHHHH-----HHHHHHHHHc--CCHHHHHHHHHHHH
Q 005877          428 SRWALESYL-KGDVGKA-----FLLYSRMAEL--GYEVAQSNAAWILD  467 (672)
Q Consensus       428 ~~lg~~~~~-~g~~~~A-----~~~~~~a~~~--g~~~a~~nla~~l~  467 (672)
                      +++|.++.. .|..++|     +.+|+++++.  ++..++++++.++.
T Consensus       238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~  285 (382)
T 2h6f_A          238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ  285 (382)
T ss_dssp             HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            777777776 4443555     3556666443  34455555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.3e-16  Score=155.81  Aligned_cols=218  Identities=15%  Similarity=0.142  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc
Q 005877          160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK  239 (672)
Q Consensus       160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~  239 (672)
                      +.++..+|.++...|++++|+.+|+++++.                                                . 
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------------------------------------~-   35 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL------------------------------------------------H-   35 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------------S-
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHh------------------------------------------------h-
Confidence            456777888888888888888888777652                                                2 


Q ss_pred             CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CC-------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 005877          240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE-------PQSMEFLGEIYARGAGVERNYTKALEWLTHAA  310 (672)
Q Consensus       240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~-------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~  310 (672)
                      .++.+++.+|.+|...     +++++|+++|+++++.  .+       +.++..+|.+|..    .+++++|+.+|++++
T Consensus        36 ~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~  106 (258)
T 3uq3_A           36 KDITYLNNRAAAEYEK-----GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK----LGDLKKTIEYYQKSL  106 (258)
T ss_dssp             CCTHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHH
Confidence            4678899999999888     4999999999999874  22       6899999999999    999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--C
Q 005877          311 RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G  386 (672)
Q Consensus       311 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~  386 (672)
                      +....      +.++..     .+++++|+..++++++..  ++.+++.+|.++..    .+++++|+.+|+++++.  .
T Consensus       107 ~~~~~------~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~  171 (258)
T 3uq3_A          107 TEHRT------ADILTK-----LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPE  171 (258)
T ss_dssp             HHCCC------HHHHHH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred             hcCch------hHHHHH-----HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcc
Confidence            86422      233433     357899999999998874  67889999999999    89999999999999874  4


Q ss_pred             CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       387 ~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      ++.++..+|.++..    .+++++|+.+|+++++..+  +.++..+|.++...|++++|+.+|+++++..
T Consensus       172 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          172 DARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            78899999999998    8999999999999998874  5678899999999999999999999997654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.76  E-value=3.6e-17  Score=171.93  Aligned_cols=236  Identities=11%  Similarity=0.068  Sum_probs=184.8

Q ss_pred             CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHhhhhccC
Q 005877          122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDM-HDKAVKLYAELAEIAVNSFLISK  198 (672)
Q Consensus       122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~-~~~A~~~y~~a~~~~~~~~~~~~  198 (672)
                      +++.++..+|.++..    .+++++|+.+|++++.  +++..+++.+|.++...|+ +++|+.+|+++++.         
T Consensus        95 ~~~~a~~~lg~~~~~----~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l---------  161 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQR----DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---------  161 (382)
T ss_dssp             HHHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---------
T ss_pred             hhHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH---------
Confidence            456788889999888    8899999999999876  7899999999999999986 99999999998763         


Q ss_pred             CCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--c
Q 005877          199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--K  276 (672)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~  276 (672)
                                                             ++.++.+++.+|.++...     +++++|+..|+++++  +
T Consensus       162 ---------------------------------------~P~~~~a~~~~g~~~~~~-----g~~~eAl~~~~kal~ldP  197 (382)
T 2h6f_A          162 ---------------------------------------QPKNYQVWHHRRVLVEWL-----RDPSQELEFIADILNQDA  197 (382)
T ss_dssp             ---------------------------------------CTTCHHHHHHHHHHHHHH-----TCCTTHHHHHHHHHHHCT
T ss_pred             ---------------------------------------CCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCc
Confidence                                                   456788888999988877     488899999999887  4


Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHH-----HHHHHHHHhC
Q 005877          277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKA-----KEYFEKAADN  349 (672)
Q Consensus       277 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A-----~~~~~~a~~~  349 (672)
                      +++.+++++|.++..    .+++++|+.+|+++++.  ++..+++.+|.++..-    .+..++|     +.+|+++++.
T Consensus       198 ~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l----~~~~~eA~~~~el~~~~~Al~l  269 (382)
T 2h6f_A          198 KNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT----TGYNDRAVLEREVQYTLEMIKL  269 (382)
T ss_dssp             TCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCSCSHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHHHHHHH
Confidence            688899999999988    88889999999998875  4788899999988751    2232555     5888888775


Q ss_pred             --CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCC-C---ccCC-HHHHHHHHHHH-H
Q 005877          350 --EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGV-G---LKKN-LHMATALYKLV-A  419 (672)
Q Consensus       350 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~-g---~~~~-~~~A~~~~~~a-~  419 (672)
                        ++..+++++|.++.. .| ..++++|++.++++ +  ..++.++..||.+|.... .   ..++ .++|+.+|+++ +
T Consensus       270 ~P~~~~a~~~l~~ll~~-~g-~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~  346 (382)
T 2h6f_A          270 VPHNESAWNYLKGILQD-RG-LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK  346 (382)
T ss_dssp             STTCHHHHHHHHHHHTT-TC-GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHc-cC-ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence              578899999988877 11 23688888888877 4  346788888888887610 0   0022 58888888888 6


Q ss_pred             HcCChh
Q 005877          420 ERGPWS  425 (672)
Q Consensus       420 ~~~~~~  425 (672)
                      +.+|..
T Consensus       347 ~~DP~r  352 (382)
T 2h6f_A          347 EKDTIR  352 (382)
T ss_dssp             TTCGGG
T ss_pred             HhCchh
Confidence            776544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=4.4e-15  Score=164.12  Aligned_cols=407  Identities=9%  Similarity=-0.026  Sum_probs=268.0

Q ss_pred             HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhc
Q 005877          119 AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI  196 (672)
Q Consensus       119 ~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~  196 (672)
                      .+|.+..++..++.. ..    .+++++|...|++++.  +.+...+..++..+...|++++|+..|++++...|.    
T Consensus         8 ~~P~~~~~w~~l~~~-~~----~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~----   78 (530)
T 2ooe_A            8 ENPYDLDAWSILIRE-AQ----NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH----   78 (530)
T ss_dssp             HCTTCHHHHHHHHHH-HH----SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC----
T ss_pred             hCCCCHHHHHHHHHH-HH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----
Confidence            456778888888874 44    6788888888888887  678888888888888888888888888888764221    


Q ss_pred             cCCCCcccchhcccCchhhhh-HhhhccCChHHHHH----HHHHHHHc-----CCHHHHHHHHHHHHhcCC----CcccC
Q 005877          197 SKDSPVIEPIRIHNGAEENKG-ALRKSRGEDDEAFQ----ILEYQAQK-----GNAGAMYKIGLFYYFGLR----GLRRD  262 (672)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~g~~~~Ai~----~~~~aa~~-----~~~~a~~~Lg~~y~~~~~----~~~~~  262 (672)
                            .       ......+ .+....|+.++|.+    .|+++.+.     .+...+...+.+......    ...++
T Consensus        79 ------~-------~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  145 (530)
T 2ooe_A           79 ------I-------DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR  145 (530)
T ss_dssp             ------H-------HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred             ------h-------HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence                  0       0011111 22234566665554    66666543     355666666666543100    00258


Q ss_pred             HHHHHHHHHHHHHcCC-H--HHHHHHHHHHHc-C--------CCCcCCHHHHHHHHHH------HHHcC------C----
Q 005877          263 RTKALMWFSKAADKGE-P--QSMEFLGEIYAR-G--------AGVERNYTKALEWLTH------AARQQ------L----  314 (672)
Q Consensus       263 ~~~A~~~~~~a~~~~~-~--~a~~~Lg~~y~~-g--------~g~~~~~~~A~~~~~~------a~~~~------~----  314 (672)
                      +++|...|+++++... .  ..+.....+-.. |        ....+++.+|...|+.      +++..      .    
T Consensus       146 ~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~  225 (530)
T 2ooe_A          146 ITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ  225 (530)
T ss_dssp             HHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred             HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence            8999999999987421 1  111111111000 0        0014567778777765      33321      1    


Q ss_pred             ----HHHHHHHHHHHHcCCCCCcCCH----HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCC---chhcHH-------H
Q 005877          315 ----YSAYNGIGYLYVKGYGVEKKNY----TKAKEYFEKAADN--EEAGGHYNLGVMYYKGIG---VKRDVK-------L  374 (672)
Q Consensus       315 ----~~a~~~Lg~~y~~g~g~~~~~~----~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g---~~~~~~-------~  374 (672)
                          ...+....... .+.....++.    ..++..|++++..  .++++++.+|.++.....   ..|+++       +
T Consensus       226 ~~~~~~~w~~~~~~e-~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~  304 (530)
T 2ooe_A          226 EAQQVDMWKKYIQWE-KSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE  304 (530)
T ss_dssp             HHHHHHHHHHHHHHH-HHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence                11222211111 1111011232    4788899999875  689999999998874000   035655       8


Q ss_pred             HHHHHHHHHH---cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHhcCCHHHHHHHHH
Q 005877          375 ACKYFLVAAN---AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW---SSLSRWALESYLKGDVGKAFLLYS  448 (672)
Q Consensus       375 A~~~~~~A~~---~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---~a~~~lg~~~~~~g~~~~A~~~~~  448 (672)
                      |+..|++|++   +.+...+..++.++..    .+++++|...|+++++..|.   .++..++..+...|++++|+..|+
T Consensus       305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~  380 (530)
T 2ooe_A          305 AANIYERAISTLLKKNMLLYFAYADYEES----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  380 (530)
T ss_dssp             HHHHHHHHTTTTCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999986   4578899999999987    78999999999999998753   367777888888899999999999


Q ss_pred             HHHHcCCH--HHHHHHHHH-HHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCC
Q 005877          449 RMAELGYE--VAQSNAAWI-LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRD  523 (672)
Q Consensus       449 ~a~~~g~~--~a~~nla~~-l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d  523 (672)
                      +|++....  ......+++ +..                .++.++|..+|++++  .++++..+..++.++.    ..++
T Consensus       381 ~Al~~~~~~~~~~~~~a~~~~~~----------------~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~----~~g~  440 (530)
T 2ooe_A          381 KAREDARTRHHVYVTAALMEYYC----------------SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS----HLNE  440 (530)
T ss_dssp             HHHTCTTCCTHHHHHHHHHHHHH----------------TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT----TTTC
T ss_pred             HHHhccCCchHHHHHHHHHHHHH----------------cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH----hCCC
Confidence            99876432  333333333 122                457899999999865  4567899999999988    7899


Q ss_pred             HHHHHHHHHHHHhcC--CHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          524 YERAAEAYMHARSQS--NAQ----AMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       524 ~~~A~~~~~~A~~~~--~~~----a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      +++|..+|++|+...  ++.    .+.........    .||.+.+...++++++.-|+
T Consensus       441 ~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~----~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          441 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN----IGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHTHH
T ss_pred             HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCch
Confidence            999999999998752  332    44444444333    57999999999999998874

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.74  E-value=3.2e-16  Score=158.95  Aligned_cols=206  Identities=12%  Similarity=0.087  Sum_probs=146.1

Q ss_pred             hhhccCChHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Q 005877          219 LRKSRGEDDEAFQILEYQA----QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAG  294 (672)
Q Consensus       219 ~~~~~g~~~~Ai~~~~~aa----~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g  294 (672)
                      .+...++.++|++.+++++    .++++.+++.+|.++...     +++++|+++|++   ++++.++..+|.+|..   
T Consensus        74 ~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~-----g~~~~Al~~l~~---~~~~~~~~~l~~~~~~---  142 (291)
T 3mkr_A           74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD-----QNPDAALRTLHQ---GDSLECMAMTVQILLK---  142 (291)
T ss_dssp             HHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT-----TCHHHHHHHHTT---CCSHHHHHHHHHHHHH---
T ss_pred             HHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHhC---CCCHHHHHHHHHHHHH---
Confidence            3334444444444444433    256888899999999888     499999999988   7888999999999998   


Q ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcH
Q 005877          295 VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDV  372 (672)
Q Consensus       295 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~  372 (672)
                       .+++++|+..|+++++.........++..+..- ....+++++|+..|+++++.  +++.+++++|.++..    .|++
T Consensus       143 -~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l-~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~  216 (291)
T 3mkr_A          143 -LDRLDLARKELKKMQDQDEDATLTQLATAWVSL-AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA----QGRW  216 (291)
T ss_dssp             -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH----TTCH
T ss_pred             -CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCH
Confidence             899999999999988764222333333222110 00135899999999999875  578889999999998    8999


Q ss_pred             HHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005877          373 KLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHM-ATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLY  447 (672)
Q Consensus       373 ~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~-A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~  447 (672)
                      ++|...|+++++  ++++.+++++|.++..    .++.++ +..+++++++..|......  ....+.+.++++..-|
T Consensus       217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~----~g~~~eaa~~~~~~~~~~~P~~~~~~--d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          217 EAAEGVLQEALDKDSGHPETLINLVVLSQH----LGKPPEVTNRYLSQLKDAHRSHPFIK--EYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHHHHHHHHc
Confidence            999999999877  4578899999988887    666654 6788899988887654332  1223334445544433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.73  E-value=2.9e-16  Score=165.90  Aligned_cols=219  Identities=14%  Similarity=0.117  Sum_probs=133.6

Q ss_pred             HHHHHHcCCCCCcCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----C--
Q 005877          321 IGYLYVKGYGVEKKNYTKAKEYFEKAADN----E----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----G--  386 (672)
Q Consensus       321 Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~--  386 (672)
                      +|.++..     .|++++|+.+|+++++.    +    .+.+++++|.+|..    .+++++|+.+|++|++.    +  
T Consensus       109 ~g~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          109 RGMYELD-----QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY----MKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHHHHHH-----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHH-----hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCccc
Confidence            5555543     34566666666666543    1    23455566666655    55666666666665541    1  


Q ss_pred             ---CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 005877          387 ---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAE---  452 (672)
Q Consensus       387 ---~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~---  452 (672)
                         ...++.++|.+|..    .+++++|+.+|+++++..    +    ..++.++|.++...|++++|+.+|+++++   
T Consensus       180 ~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  255 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLD----LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE  255 (383)
T ss_dssp             HHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence               12455566666655    566666666666665442    1    12455566666666666666666666655   


Q ss_pred             -----cCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC----CCH---HHHHHHHHHHHhCCCC
Q 005877          453 -----LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ----GNE---HAALLIGDAYYYGRGT  520 (672)
Q Consensus       453 -----~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~---~a~~~lG~~y~~g~g~  520 (672)
                           .+...++.++|.++..                .+++++|+.+++++.+.    +++   ..+..+|.+|.    .
T Consensus       256 ~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----~  315 (383)
T 3ulq_A          256 ESNILPSLPQAYFLITQIHYK----------------LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL----S  315 (383)
T ss_dssp             HTTCGGGHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----S
T ss_pred             hhccchhHHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh----C
Confidence                 2234455566666655                45566666666654332    222   22457899998    7


Q ss_pred             CCC---HHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          521 QRD---YERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       521 ~~d---~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      .++   +.+|+.++++.-.. ....++..||.+|..    .|++++|..+|++|+++...
T Consensus       316 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~----~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          316 GPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHE----RKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTS
T ss_pred             CCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHH
Confidence            777   88888888877322 345688899999988    89999999999999987543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.72  E-value=3.8e-16  Score=146.48  Aligned_cols=139  Identities=24%  Similarity=0.206  Sum_probs=86.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC
Q 005877          239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QL  314 (672)
Q Consensus       239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~  314 (672)
                      +.++.+++.+|.+|...     +++++|+..++++..  +.++.+...+|.++..    .+++++|+..++++++.  .+
T Consensus        36 p~~~~~~~~la~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~  106 (184)
T 3vtx_A           36 PNNVETLLKLGKTYMDI-----GLPNDAIESLKKFVVLDTTSAEAYYILGSANFM----IDEKQAAIDALQRAIALNTVY  106 (184)
T ss_dssp             TTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccc
Confidence            34566666666666665     366666666666654  3456666666666666    66666666666666543  35


Q ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHH
Q 005877          315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFY  392 (672)
Q Consensus       315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~  392 (672)
                      +.++..+|.+|..     .|++++|+.+|+++++.  +++.+++++|.+|..    .+++++|+.+|++|++..+..+.+
T Consensus       107 ~~~~~~lg~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~a~~  177 (184)
T 3vtx_A          107 ADAYYKLGLVYDS-----MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG----KGLRDEAVKYFKKALEKEEKKAKY  177 (184)
T ss_dssp             HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             hHHHHHHHHHHHH-----hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH----CCCHHHHHHHHHHHHhCCccCHHH
Confidence            6666666666664     45666666666666554  356666666666666    666666666666666665555555


Q ss_pred             HHH
Q 005877          393 QLA  395 (672)
Q Consensus       393 ~L~  395 (672)
                      +||
T Consensus       178 ~la  180 (184)
T 3vtx_A          178 ELA  180 (184)
T ss_dssp             CSC
T ss_pred             HHH
Confidence            544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.71  E-value=4.9e-16  Score=164.19  Aligned_cols=223  Identities=14%  Similarity=0.103  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---
Q 005877          281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---  349 (672)
Q Consensus       281 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---  349 (672)
                      .++.+|.++..    .+++++|+.+|+++++.    +    .+.+++.+|.+|..     .+++++|+.++++|++.   
T Consensus       105 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-----~~~~~~A~~~~~~al~~~~~  175 (383)
T 3ulq_A          105 FNFFRGMYELD----QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY-----MKQTYFSMDYARQAYEIYKE  175 (383)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHh
Confidence            44558999998    99999999999999874    2    45689999999996     67999999999999864   


Q ss_pred             -C-----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCccCCHHHHHHHH
Q 005877          350 -E-----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALY  415 (672)
Q Consensus       350 -~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~  415 (672)
                       +     .+.++.++|.+|..    .+++++|+.+|++|++.    ++    ..+++++|.+|..    .+++++|+.+|
T Consensus       176 ~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~  247 (383)
T 3ulq_A          176 HEAYNIRLLQCHSLFATNFLD----LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYF  247 (383)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHH
Confidence             2     25688999999999    99999999999999863    22    3589999999998    99999999999


Q ss_pred             HHHHHc-----C-C--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCHHH---HHHHHHHHHHhCCCCcccCCCC
Q 005877          416 KLVAER-----G-P--WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GYEVA---QSNAAWILDKYGEGSMCMGESG  480 (672)
Q Consensus       416 ~~a~~~-----~-~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~----g~~~a---~~nla~~l~~~~~~~~~~~~~~  480 (672)
                      +++++.     . +  +.++..+|.++...|++++|+.+++++++.    +++..   ..+++.++...+.         
T Consensus       248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~---------  318 (383)
T 3ulq_A          248 KRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD---------  318 (383)
T ss_dssp             HHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC---------
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc---------
Confidence            999983     3 2  346899999999999999999999999765    23322   3557777655221         


Q ss_pred             CCCchHhHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877          481 FCTDAERHQCAHSLWWQASEQ-GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ  537 (672)
Q Consensus       481 ~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~  537 (672)
                          .+.+++|+.++++.... ....++..||.+|.    ..+++++|..+|+++++.
T Consensus       319 ----~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~----~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          319 ----EEAIQGFFDFLESKMLYADLEDFAIDVAKYYH----ERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHH
Confidence                24588999999876222 22567789999999    899999999999999763

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.70  E-value=5.5e-16  Score=154.95  Aligned_cols=183  Identities=13%  Similarity=0.023  Sum_probs=87.6

Q ss_pred             CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 005877          241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYS  316 (672)
Q Consensus       241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~  316 (672)
                      ++.++..+|.+|...     +++++|+.+|+++++  +.++.++..+|.+|..    .+++++|+.+|+++++.  +++.
T Consensus        76 ~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~  146 (275)
T 1xnf_A           76 MPEVFNYLGIYLTQA-----GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDDPNDPF  146 (275)
T ss_dssp             CHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChH
Confidence            344444444444444     244444444444444  2344444555555544    44555555555554432  2333


Q ss_pred             HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC------HH
Q 005877          317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH------QK  389 (672)
Q Consensus       317 a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~~  389 (672)
                      ....++..+.      .+++++|+.++++++... .....+.++.++..    .++.++|+..++++++...      +.
T Consensus       147 ~~~~~~~~~~------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  216 (275)
T 1xnf_A          147 RSLWLYLAEQ------KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG----NISEQTLMERLKADATDNTSLAEHLSE  216 (275)
T ss_dssp             HHHHHHHHHH------HHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT----SSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHH------hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH----hcCHHHHHHHHHHHhcccccccccccH
Confidence            3333333322      235555555555554431 11112234444444    4455556666655544322      45


Q ss_pred             HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005877          390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLY  447 (672)
Q Consensus       390 a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~  447 (672)
                      +++.+|.+|..    .+++++|+.+|+++++..|.. ....+..+...|++++|+..|
T Consensus       217 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          217 TNFYLGKYYLS----LGDLDSATALFKLAVANNVHN-FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHhhHHHH
Confidence            66666766665    667777777777776665432 223355566666666666655

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.70  E-value=1e-13  Score=153.15  Aligned_cols=383  Identities=11%  Similarity=-0.002  Sum_probs=265.6

Q ss_pred             HHHHH--hCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHH
Q 005877          151 HHFAA--EGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDE  228 (672)
Q Consensus       151 ~~~A~--~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~  228 (672)
                      +++++  ++.+..++..++.. ...+++++|...|+++++..|...                ..+...+......|++++
T Consensus         2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~----------------~~w~~~~~~~~~~~~~~~   64 (530)
T 2ooe_A            2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSG----------------RFWKLYIEAEIKAKNYDK   64 (530)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCH----------------HHHHHHHHHHHHTTCHHH
T ss_pred             hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHhcCCHHH
Confidence            34444  47899999999984 778999999999999988654321                234456777888999999


Q ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcccCHHH----HHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCC---
Q 005877          229 AFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTK----ALMWFSKAADK-----GEPQSMEFLGEIYARGAGV---  295 (672)
Q Consensus       229 Ai~~~~~aa~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~----A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~---  295 (672)
                      |...|++++.. .+.+.+..++.......    ++++.    +...|+++++.     .+...+..++.+......+   
T Consensus        65 a~~~~~ral~~~p~~~lw~~~~~~~~~~~----~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~  140 (530)
T 2ooe_A           65 VEKLFQRCLMKVLHIDLWKCYLSYVRETK----GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSY  140 (530)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHHHT----TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSST
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHc----cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccH
Confidence            99999999766 36777777776443321    24444    44588888763     3566666677665532111   


Q ss_pred             --cCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHH-cC-------CCCCcCCHHHHHHHHHH------HHhCC----C-
Q 005877          296 --ERNYTKALEWLTHAARQQLY---SAYNGIGYLYV-KG-------YGVEKKNYTKAKEYFEK------AADNE----E-  351 (672)
Q Consensus       296 --~~~~~~A~~~~~~a~~~~~~---~a~~~Lg~~y~-~g-------~g~~~~~~~~A~~~~~~------a~~~~----~-  351 (672)
                        .+++++|...|+++++....   ..+.....+.. .|       .....+++.+|...|+.      +++..    . 
T Consensus       141 ~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p  220 (530)
T 2ooe_A          141 AENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP  220 (530)
T ss_dssp             THHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred             HHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence              47899999999999985321   11111111100 00       00012467788877765      33321    1 


Q ss_pred             ---------HHHHHHHHHHHHcCCCchhc----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCC---ccCCHH----
Q 005877          352 ---------AGGHYNLGVMYYKGIGVKRD----VKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVG---LKKNLH----  409 (672)
Q Consensus       352 ---------~~a~~~Lg~~y~~g~g~~~~----~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g---~~~~~~----  409 (672)
                               ...+......-.......++    ..+++..|++++.  +.++..++.+|.++.....   ..++.+    
T Consensus       221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~  300 (530)
T 2ooe_A          221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL  300 (530)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence                     12222222221111000122    3578899999987  5689999999999873000   036665    


Q ss_pred             ---HHHHHHHHHHH-cC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CH-HHHHHHHHHHHHhCCCCcccCCCC
Q 005877          410 ---MATALYKLVAE-RG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--YE-VAQSNAAWILDKYGEGSMCMGESG  480 (672)
Q Consensus       410 ---~A~~~~~~a~~-~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~-~a~~nla~~l~~~~~~~~~~~~~~  480 (672)
                         +|+..|+++++ ..  +...+..++..+...|++++|...|+++++..  ++ .++.+++.++.+            
T Consensus       301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~------------  368 (530)
T 2ooe_A          301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR------------  368 (530)
T ss_dssp             HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH------------
T ss_pred             hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH------------
Confidence               99999999997 44  35677888999999999999999999998875  33 578888888877            


Q ss_pred             CCCchHhHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCC
Q 005877          481 FCTDAERHQCAHSLWWQASEQGN--EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGL  556 (672)
Q Consensus       481 ~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~  556 (672)
                          .+++++|...|+++.+..+  ...+...+.+.+.   ..+++++|..+|+++++  ++++..+.+++.++..    
T Consensus       369 ----~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~---~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~----  437 (530)
T 2ooe_A          369 ----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY---CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----  437 (530)
T ss_dssp             ----HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH---HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----
T ss_pred             ----hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH---HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----
Confidence                7899999999999987654  4455555655331   47899999999999987  4789999999999876    


Q ss_pred             CCCHHHHHHHHHHHHhcCCCC
Q 005877          557 PLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       557 ~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      .|+.++|+.+|++|+...|..
T Consensus       438 ~g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          438 LNEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSCCSC
T ss_pred             CCCHhhHHHHHHHHHhccCCC
Confidence            799999999999999987653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.70  E-value=1.2e-15  Score=142.98  Aligned_cols=169  Identities=15%  Similarity=0.121  Sum_probs=145.3

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHH
Q 005877          278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG  353 (672)
Q Consensus       278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~  353 (672)
                      ++..++.||.+|..    .|++++|+.+|+++++.  +++.++..+|.+|..     .+++++|+..++++...  .++.
T Consensus         4 ~~~iy~~lG~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~   74 (184)
T 3vtx_A            4 TTTIYMDIGDKKRT----KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD-----IGLPNDAIESLKKFVVLDTTSAE   74 (184)
T ss_dssp             CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCCCCHH
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCchhHH
Confidence            56788899999998    89999999999999875  588899999999986     57999999999998765  5788


Q ss_pred             HHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHH
Q 005877          354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR  429 (672)
Q Consensus       354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~  429 (672)
                      ++..+|.++..    .+++++|...+.++.+  +.+..++..+|.+|..    .+++++|+.+|+++++..|  +.++.+
T Consensus        75 ~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~  146 (184)
T 3vtx_A           75 AYYILGSANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIKPGFIRAYQS  146 (184)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhcchhhhHHHH
Confidence            89999999988    8899999999999877  4578889999999988    8999999999999998874  567889


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005877          430 WALESYLKGDVGKAFLLYSRMAELGYEVAQSNAA  463 (672)
Q Consensus       430 lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla  463 (672)
                      +|.++...|++++|+.+|++|++.+...+.+++|
T Consensus       147 lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~la  180 (184)
T 3vtx_A          147 IGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA  180 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHHH
Confidence            9999999999999999999999887766665554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.69  E-value=2.8e-15  Score=149.71  Aligned_cols=214  Identities=16%  Similarity=0.059  Sum_probs=136.0

Q ss_pred             CCHHHHHHHHHHHHhC------CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCcc
Q 005877          334 KNYTKAKEYFEKAADN------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK  405 (672)
Q Consensus       334 ~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~  405 (672)
                      +++++|+.+|+++++.      +++.+++.+|.+|..    .+++++|+.+|+++++.  .++.++..+|.+|..    .
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~   90 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ----A   90 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----T
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----c
Confidence            4556666666666553      234555666666666    56666666666666553  345666666666665    5


Q ss_pred             CCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCC
Q 005877          406 KNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGF  481 (672)
Q Consensus       406 ~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~  481 (672)
                      +++++|+.+|+++++..+  +.++..+|.++...|++++|+.+|+++++..  +......++.. ..             
T Consensus        91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~-------------  156 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ-------------  156 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH-------------
T ss_pred             cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH-------------
Confidence            666666666666666542  4456666666666666666666666665443  33333333222 22             


Q ss_pred             CCchHhHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHcCC
Q 005877          482 CTDAERHQCAHSLWWQASEQGN-EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS------NAQAMFNLGYMHEHGQ  554 (672)
Q Consensus       482 ~~~~~~~~~A~~~~~~a~~~~~-~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~a~~~Lg~~y~~g~  554 (672)
                         .+++++|+..++++....+ ....+.++.++.    ..++.++|+..++++++..      ++.+++.+|.+|..  
T Consensus       157 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--  227 (275)
T 1xnf_A          157 ---KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL----GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS--  227 (275)
T ss_dssp             ---HHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHT----TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ---hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH----HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH--
Confidence               4567777777765544322 122345666666    6778899999999987653      26889999999987  


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCCcch
Q 005877          555 GLPLDLHLAKRYYDQALEVDPAAKLP  580 (672)
Q Consensus       555 g~~~d~~~A~~~~~~A~~~~~~~~~~  580 (672)
                        .|++++|+.+|+++++.+|+....
T Consensus       228 --~g~~~~A~~~~~~al~~~p~~~~~  251 (275)
T 1xnf_A          228 --LGDLDSATALFKLAVANNVHNFVE  251 (275)
T ss_dssp             --TTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             --cCCHHHHHHHHHHHHhCCchhHHH
Confidence              899999999999999999876543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.68  E-value=2.6e-15  Score=158.38  Aligned_cols=156  Identities=14%  Similarity=0.100  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---
Q 005877          281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---  349 (672)
Q Consensus       281 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---  349 (672)
                      .++.+|..+..    .+++++|+.+|+++++.    +    .+.+++.+|.+|..     .+++++|+.++++|++.   
T Consensus       103 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~-----~~~~~~A~~~~~~al~~~~~  173 (378)
T 3q15_A          103 SLFFRGMYEFD----QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH-----MKQTHVSMYHILQALDIYQN  173 (378)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH----HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHh
Confidence            56778888888    89999999999999864    2    35678889999886     56999999999998763   


Q ss_pred             -C-----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCccCCHHHHHHHH
Q 005877          350 -E-----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALY  415 (672)
Q Consensus       350 -~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~  415 (672)
                       +     .+.+++++|.+|..    .+++++|+.+|++|++.    ++    ..++.++|.+|..    .+++++|+.+|
T Consensus       174 ~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~  245 (378)
T 3q15_A          174 HPLYSIRTIQSLFVIAGNYDD----FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHF  245 (378)
T ss_dssp             STTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHH
Confidence             1     25577889999988    88999999999998763    22    4577888988887    88999999999


Q ss_pred             HHHHH-----cCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          416 KLVAE-----RGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       416 ~~a~~-----~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      +++++     ..+  +.++..+|.++...|++++|+.+++++++.
T Consensus       246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            98887     332  346778888888888888888888888764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.66  E-value=5.7e-15  Score=160.59  Aligned_cols=204  Identities=15%  Similarity=0.092  Sum_probs=178.5

Q ss_pred             ChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCH-HHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCH
Q 005877          225 EDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDR-TKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNY  299 (672)
Q Consensus       225 ~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~-~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~  299 (672)
                      ..++++..++.....  .++.+++.+|.+|...     +++ ++|+++|+++++  ++++.+++.+|.+|..    .+++
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~-----g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~  153 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVT-----PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK----KGDV  153 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSS-----SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCH
Confidence            355666666665443  5899999999999877     499 999999999987  4689999999999999    9999


Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCc---------CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCC
Q 005877          300 TKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEK---------KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIG  367 (672)
Q Consensus       300 ~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~---------~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g  367 (672)
                      ++|+.+|+++++.. +..++..+|.+|..     .         +++++|+.+|+++++.  +++.+++++|.+|..   
T Consensus       154 ~~A~~~~~~al~~~p~~~~~~~lg~~~~~-----~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---  225 (474)
T 4abn_A          154 TSAHTCFSGALTHCKNKVSLQNLSMVLRQ-----LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS---  225 (474)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHTT-----CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHH-----hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Confidence            99999999999764 57889999999985     5         7999999999999876  589999999999988   


Q ss_pred             ch--------hcHHHHHHHHHHHHH--c---CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHH
Q 005877          368 VK--------RDVKLACKYFLVAAN--A---GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWAL  432 (672)
Q Consensus       368 ~~--------~~~~~A~~~~~~A~~--~---~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~  432 (672)
                       .        +++++|+.+|+++++  +   .++.+++++|.+|..    .+++++|+.+|+++++..|  +.++..++.
T Consensus       226 -~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~a~~~l~~  300 (474)
T 4abn_A          226 -LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY----EESYGEALEGFSQAAALDPAWPEPQQREQQ  300 (474)
T ss_dssp             -HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             -HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence             7        999999999999987  4   578999999999998    8999999999999999874  567899999


Q ss_pred             HHHhcCCHHHHHHHHHHH
Q 005877          433 ESYLKGDVGKAFLLYSRM  450 (672)
Q Consensus       433 ~~~~~g~~~~A~~~~~~a  450 (672)
                      ++...|++++|+..+.+.
T Consensus       301 ~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          301 LLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            999999999999877654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.66  E-value=7e-15  Score=159.90  Aligned_cols=202  Identities=19%  Similarity=0.182  Sum_probs=178.0

Q ss_pred             CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCH
Q 005877          262 DRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNY-TKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNY  336 (672)
Q Consensus       262 ~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~-~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~  336 (672)
                      .+++++..+++...  ..++.+++.+|.+|..    .+++ ++|+.+|+++++.  +++.+++.||.+|..     .|++
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-----~g~~  153 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNV----TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK-----KGDV  153 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTS----SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHh----ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----cCCH
Confidence            46777777776655  3579999999999999    9999 9999999999875  479999999999996     6799


Q ss_pred             HHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCch---------hcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCc
Q 005877          337 TKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVK---------RDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGL  404 (672)
Q Consensus       337 ~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~---------~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~  404 (672)
                      ++|+.+|+++++.+ ++.++.++|.+|..    .         +++++|+.+|+++++.  .++.+++++|.+|..    
T Consensus       154 ~~A~~~~~~al~~~p~~~~~~~lg~~~~~----~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----  225 (474)
T 4abn_A          154 TSAHTCFSGALTHCKNKVSLQNLSMVLRQ----LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS----  225 (474)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHTT----CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHH----hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Confidence            99999999999874 57999999999998    7         9999999999999874  578999999999986    


Q ss_pred             c--------CCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh
Q 005877          405 K--------KNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKY  469 (672)
Q Consensus       405 ~--------~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~  469 (672)
                      .        +++++|+.+|+++++..|     +.+++++|.++...|++++|+.+|+++++.  ++..++.+++.++.. 
T Consensus       226 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~-  304 (474)
T 4abn_A          226 LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF-  304 (474)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence            6        899999999999998765     567999999999999999999999999665  688899999999988 


Q ss_pred             CCCCcccCCCCCCCchHhHHHHHHHHH
Q 005877          470 GEGSMCMGESGFCTDAERHQCAHSLWW  496 (672)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~  496 (672)
                                     .+++++|+..+.
T Consensus       305 ---------------lg~~~eAi~~~~  316 (474)
T 4abn_A          305 ---------------LSRLTSLLESKG  316 (474)
T ss_dssp             ---------------HHHHHHHHHHTT
T ss_pred             ---------------HHHHHHHHHHhc
Confidence                           778888877544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.66  E-value=1.6e-14  Score=142.54  Aligned_cols=195  Identities=16%  Similarity=0.133  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL  427 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~  427 (672)
                      +.+++.+|.++..    .+++++|+.+|+++++.  .+..+++.+|.++..    .+++++|+.+|+++++..+  +.++
T Consensus        37 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~  108 (252)
T 2ho1_A           37 RDAYIQLGLGYLQ----RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT----EMEPKLADEEYRKALASDSRNARVL  108 (252)
T ss_dssp             HHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHH
Confidence            4445555555555    55555555555555542  245555555555554    5555566666655555542  3345


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--C
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAE----LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--Q  501 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~----~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~  501 (672)
                      ..+|..+...|++++|+.+|+++++    ..+..++.++|.++..                .+++++|+.+++++.+  +
T Consensus       109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~A~~~~~~~~~~~~  172 (252)
T 2ho1_A          109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----------------MKKPAQAKEYFEKSLRLNR  172 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhcCc
Confidence            5555556666666666666666654    2234555556665555                4456666666665433  4


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          502 GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       502 ~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      .++.+++.+|.+|.    ..+++++|+.+++++++.  .++.++..++.++..    .+++++|.++++++++..|+..
T Consensus       173 ~~~~~~~~la~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~p~~~  243 (252)
T 2ho1_A          173 NQPSVALEMADLLY----KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV----FEDRDTAASYGLQLKRLYPGSL  243 (252)
T ss_dssp             CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTSH
T ss_pred             ccHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCCH
Confidence            56788889999999    889999999999999874  678899999999887    8899999999999999988754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.65  E-value=6.9e-15  Score=155.08  Aligned_cols=228  Identities=17%  Similarity=0.134  Sum_probs=178.8

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCC
Q 005877          162 SKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN  241 (672)
Q Consensus       162 a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~  241 (672)
                      .++.+|..+...|++++|+.+|+++++.....                              ++            ....
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------~~------------~~~~  140 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFV------------------------------SD------------DIEK  140 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC------------------------------CC------------HHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC------------------------------CC------------hHHH
Confidence            45567777888888888888888876532110                              00            1124


Q ss_pred             HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----C-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877          242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----G-----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ  312 (672)
Q Consensus       242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  312 (672)
                      +.+++.+|.+|...     +++++|+.+++++++.    +     .+.++..+|.+|..    .+++++|+.+|+++++.
T Consensus       141 a~~~~~lg~~y~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~  211 (378)
T 3q15_A          141 AEFHFKVAEAYYHM-----KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD----FKHYDKALPHLEAALEL  211 (378)
T ss_dssp             HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence            67889999999988     4999999999999862    2     25688999999999    99999999999999864


Q ss_pred             ----C----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-----C--CCHHHHHHHHHHHHcCCCchhcHHHHHH
Q 005877          313 ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD-----N--EEAGGHYNLGVMYYKGIGVKRDVKLACK  377 (672)
Q Consensus       313 ----~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~-----~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~  377 (672)
                          +    ...++.+||.+|..     .|++++|+.+|+++++     .  ..+.+++++|.+|..    .+++++|+.
T Consensus       212 ~~~~~~~~~~~~~~~~lg~~y~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~  282 (378)
T 3q15_A          212 AMDIQNDRFIAISLLNIANSYDR-----SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK----AGQTQKAFQ  282 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH----CCCHHHHHH
Confidence                2    34578899999986     6799999999999987     3  247889999999999    999999999


Q ss_pred             HHHHHHHcC----C---HHHHHHHHHHHHcCCCccCC---HHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 005877          378 YFLVAANAG----H---QKAFYQLAKMFHTGVGLKKN---LHMATALYKLVAERG-PWSSLSRWALESYLKGDVGKAFLL  446 (672)
Q Consensus       378 ~~~~A~~~~----~---~~a~~~L~~~y~~g~g~~~~---~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~g~~~~A~~~  446 (672)
                      +|+++++..    +   ......++.+|..    .++   +.+|+.++++.-... ....+..+|..+...|++++|+.+
T Consensus       283 ~~~~al~~~~~~~~~~~~~~~~~l~~ly~~----~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~  358 (378)
T 3q15_A          283 FIEEGLDHITARSHKFYKELFLFLQAVYKE----TVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAF  358 (378)
T ss_dssp             HHHHHHHHCCTTCCSCHHHHHHHHHHHHSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999998742    2   3455677777765    566   889999988732111 134677899999999999999999


Q ss_pred             HHHHHHc
Q 005877          447 YSRMAEL  453 (672)
Q Consensus       447 ~~~a~~~  453 (672)
                      |+++++.
T Consensus       359 ~~~al~~  365 (378)
T 3q15_A          359 YRKVLKA  365 (378)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.65  E-value=6.7e-15  Score=144.03  Aligned_cols=204  Identities=19%  Similarity=0.128  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCC
Q 005877          124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSP  201 (672)
Q Consensus       124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~  201 (672)
                      +.+++.+|..+..    .+++++|+.+|++++.  +.++.++..+|.++...|++++|+.+|+++++.            
T Consensus        23 ~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------   86 (243)
T 2q7f_A           23 SMTGGQQMGRGSE----FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL------------   86 (243)
T ss_dssp             -----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------
Confidence            4555666666665    6666777777776665  456666666777776667777776666666542            


Q ss_pred             cccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCH
Q 005877          202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEP  279 (672)
Q Consensus       202 ~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~  279 (672)
                                                          .+.++.++..+|.++...     +++++|+++|+++++.  .++
T Consensus        87 ------------------------------------~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~~~~~~~~~  125 (243)
T 2q7f_A           87 ------------------------------------DSSAATAYYGAGNVYVVK-----EMYKEAKDMFEKALRAGMENG  125 (243)
T ss_dssp             ------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHTCCSH
T ss_pred             ------------------------------------CCcchHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhCCCCH
Confidence                                                123455556666666555     3666666666665542  355


Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHH
Q 005877          280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGH  355 (672)
Q Consensus       280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~  355 (672)
                      .++..+|.+|..    .+++++|+.+++++++.  +++.++..+|.++..     .|++++|+.+|+++++.  +++.++
T Consensus       126 ~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~  196 (243)
T 2q7f_A          126 DLFYMLGTVLVK----LEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-----EGMLDEALSQFAAVTEQDPGHADAF  196 (243)
T ss_dssp             HHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCcccHHHH
Confidence            566666666665    56666666666666543  345555566665553     34556666666665543  345556


Q ss_pred             HHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 005877          356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKM  397 (672)
Q Consensus       356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~  397 (672)
                      +.+|.+|..    .+++++|+.+|+++++.  .++.++..++.+
T Consensus       197 ~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l  236 (243)
T 2q7f_A          197 YNAGVTYAY----KENREKALEMLDKAIDIQPDHMLALHAKKLL  236 (243)
T ss_dssp             HHHHHHHHH----TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred             HHHHHHHHH----ccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence            666666655    55666666666665543  344444444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.64  E-value=5.4e-15  Score=144.67  Aligned_cols=196  Identities=17%  Similarity=0.167  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHH
Q 005877          316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF  391 (672)
Q Consensus       316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~  391 (672)
                      .+++.+|.++..     .+++++|+.+|+++++.  +++.+++.+|.++..    .+++++|+.+|+++++.  .+..++
T Consensus        24 ~~~~~~a~~~~~-----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~   94 (243)
T 2q7f_A           24 MTGGQQMGRGSE-----FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSS----VNELERALAFYDKALELDSSAATAY   94 (243)
T ss_dssp             -----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHH-----hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcchHHH
Confidence            344455555543     44555555555555543  245555555555555    55555555555555442  244555


Q ss_pred             HHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005877          392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKY  469 (672)
Q Consensus       392 ~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~  469 (672)
                      ..+|.++..    .+++++|+.+|+++++..+  +.++..+|.++...|++++|+.+++++++.                
T Consensus        95 ~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------  154 (243)
T 2q7f_A           95 YGAGNVYVV----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL----------------  154 (243)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------
Confidence            555555554    4555555555555554442  334444444455555555555444444332                


Q ss_pred             CCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHH
Q 005877          470 GEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLG  547 (672)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg  547 (672)
                                                    .+.++.+++.+|.++.    ..+++++|+.+++++++.  .++.+++.+|
T Consensus       155 ------------------------------~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  200 (243)
T 2q7f_A          155 ------------------------------NENDTEARFQFGMCLA----NEGMLDEALSQFAAVTEQDPGHADAFYNAG  200 (243)
T ss_dssp             ------------------------------CTTCHHHHHHHHHHHH----HHTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ------------------------------CCccHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence                                          2345667777888887    778888888888887663  5677888888


Q ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          548 YMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       548 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      .+|..    .+++++|+.+|+++++.+|+..
T Consensus       201 ~~~~~----~~~~~~A~~~~~~~~~~~p~~~  227 (243)
T 2q7f_A          201 VTYAY----KENREKALEMLDKAIDIQPDHM  227 (243)
T ss_dssp             HHHHH----TTCTTHHHHHHHHHHHHCTTCH
T ss_pred             HHHHH----ccCHHHHHHHHHHHHccCcchH
Confidence            88876    7788888888888888877753

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.64  E-value=5.4e-14  Score=138.64  Aligned_cols=192  Identities=19%  Similarity=0.156  Sum_probs=123.1

Q ss_pred             hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCC
Q 005877          124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSP  201 (672)
Q Consensus       124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~  201 (672)
                      +.+++.+|.+|..    .+++++|+.+|++++.  ++++.++..+|.+|...|++++|+.+|+++++.            
T Consensus        37 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------------  100 (252)
T 2ho1_A           37 RDAYIQLGLGYLQ----RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS------------  100 (252)
T ss_dssp             HHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence            5566677777776    6777777777777665  466777777777777777777777777776552            


Q ss_pred             cccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH----cC
Q 005877          202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD----KG  277 (672)
Q Consensus       202 ~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~----~~  277 (672)
                                                          .+.++.++..+|.+|...     +++++|+++|+++++    +.
T Consensus       101 ------------------------------------~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~~~~~  139 (252)
T 2ho1_A          101 ------------------------------------DSRNARVLNNYGGFLYEQ-----KRYEEAYQRLLEASQDTLYPE  139 (252)
T ss_dssp             ------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTTCTTCTT
T ss_pred             ------------------------------------CcCcHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHhCccCcc
Confidence                                                223455666666666655     366666666666655    23


Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHH
Q 005877          278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG  353 (672)
Q Consensus       278 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~  353 (672)
                      ++.++..+|.+|..    .+++++|+.+|+++++.  .++.++..+|.+|..     .+++++|+.+|+++++.  .++.
T Consensus       140 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~  210 (252)
T 2ho1_A          140 RSRVFENLGLVSLQ----MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK-----EREYVPARQYYDLFAQGGGQNAR  210 (252)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTSCCCHH
T ss_pred             cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCcCcHH
Confidence            45566666666666    66666666666666653  255666666666654     44666666666666554  3555


Q ss_pred             HHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc
Q 005877          354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA  385 (672)
Q Consensus       354 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  385 (672)
                      ++..++.++..    .+++++|..+++++.+.
T Consensus       211 ~~~~~~~~~~~----~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          211 SLLLGIRLAKV----FEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----ccCHHHHHHHHHHHHHH
Confidence            66666666666    56666666666666553

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.63  E-value=1e-13  Score=133.61  Aligned_cols=144  Identities=13%  Similarity=0.055  Sum_probs=65.1

Q ss_pred             CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc-CCHHHHHHHHHHHHH--c--CCHHHHHHHHHHHHcCCCCCcC
Q 005877          262 DRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVE-RNYTKALEWLTHAAR--Q--QLYSAYNGIGYLYVKGYGVEKK  334 (672)
Q Consensus       262 ~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~--~--~~~~a~~~Lg~~y~~g~g~~~~  334 (672)
                      ++++|+++|+++++  +.++.++..+|.+|..    . +++++|+.+|+++++  .  .++.++..+|.++..     .|
T Consensus        57 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~  127 (225)
T 2vq2_A           57 VNDKAQESFRQALSIKPDSAEINNNYGWFLCG----RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-----QG  127 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-----TT
T ss_pred             ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-----cC
Confidence            44444444444433  2234444444444444    4 444444444444444  1  123444444444443     33


Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--c-CCHHHHHHHHHHHHcCCCccCCHH
Q 005877          335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--A-GHQKAFYQLAKMFHTGVGLKKNLH  409 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~-~~~~a~~~L~~~y~~g~g~~~~~~  409 (672)
                      ++++|+.+|+++++.  +++.+++.+|.++..    .+++++|+.+|+++++  + .++.++..++.++..    .++.+
T Consensus       128 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  199 (225)
T 2vq2_A          128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKML----AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA----LGNAQ  199 (225)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCcHH
Confidence            444455544444433  234445555555544    4555555555555443  2 334444444444443    45555


Q ss_pred             HHHHHHHHHHHcC
Q 005877          410 MATALYKLVAERG  422 (672)
Q Consensus       410 ~A~~~~~~a~~~~  422 (672)
                      +|..+++.+.+..
T Consensus       200 ~a~~~~~~~~~~~  212 (225)
T 2vq2_A          200 AAYEYEAQLQANF  212 (225)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            5555555544443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.63  E-value=8e-14  Score=134.28  Aligned_cols=197  Identities=12%  Similarity=0.038  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHH
Q 005877          315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA  390 (672)
Q Consensus       315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a  390 (672)
                      +.++..+|.++..     .|++++|+.+|+++++.  +++.+++.+|.+|..    .+++++|+.+|+++++.  .+..+
T Consensus         8 ~~~~~~~~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~   78 (225)
T 2vq2_A            8 SNIKTQLAMEYMR-----GQDYRQATASIEDALKSDPKNELAWLVRAEIYQY----LKVNDKAQESFRQALSIKPDSAEI   78 (225)
T ss_dssp             HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHH
Confidence            4445555555553     44555555555555443  244555555555555    55555555555555442  24445


Q ss_pred             HHHHHHHHHcCCCcc-CCHHHHHHHHHHHHH--cCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005877          391 FYQLAKMFHTGVGLK-KNLHMATALYKLVAE--RGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWI  465 (672)
Q Consensus       391 ~~~L~~~y~~g~g~~-~~~~~A~~~~~~a~~--~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~  465 (672)
                      +..+|.++..    . +++++|+.+|+++++  ..+  +.++..+|.++...|++++|+.+++++++.            
T Consensus        79 ~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------  142 (225)
T 2vq2_A           79 NNNYGWFLCG----RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA------------  142 (225)
T ss_dssp             HHHHHHHHHT----TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHH----hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Confidence            5555555544    4 555555555555554  111  233444444444445554444444444332            


Q ss_pred             HHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--c-CCHHH
Q 005877          466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--Q-SNAQA  542 (672)
Q Consensus       466 l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~-~~~~a  542 (672)
                                                        .+.++.+++.+|.++.    ..+++++|+.+++++++  + .++.+
T Consensus       143 ----------------------------------~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~  184 (225)
T 2vq2_A          143 ----------------------------------QPQFPPAFKELARTKM----LAGQLGDADYYFKKYQSRVEVLQADD  184 (225)
T ss_dssp             ----------------------------------STTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHCSCCHHH
T ss_pred             ----------------------------------CCCCchHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence                                              2445677788888888    78889999999988866  4 67778


Q ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          543 MFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       543 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      +..++.++..    .++.+.|..+++.+.+.+|+..
T Consensus       185 ~~~~~~~~~~----~~~~~~a~~~~~~~~~~~p~~~  216 (225)
T 2vq2_A          185 LLLGWKIAKA----LGNAQAAYEYEAQLQANFPYSE  216 (225)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCCH
Confidence            7777777766    6888899999888888887754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.62  E-value=1.7e-13  Score=133.25  Aligned_cols=203  Identities=13%  Similarity=0.032  Sum_probs=143.7

Q ss_pred             CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--C-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhcc
Q 005877          121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--G-GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS  197 (672)
Q Consensus       121 ~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~-~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~  197 (672)
                      +.++.+++.+|.+|..    .+++++|+.+|+++++  + .+..+++.+|.++...|++++|+.+|+++++.        
T Consensus         4 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------   71 (228)
T 4i17_A            4 TTDPNQLKNEGNDALN----AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--------   71 (228)
T ss_dssp             CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred             ccCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence            4566777777777777    7777778877777766  3 56677777777777777777777777776552        


Q ss_pred             CCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-
Q 005877          198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-  276 (672)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-  276 (672)
                                                              ++.++.+++.+|.+|...     +++++|+.+|+++++. 
T Consensus        72 ----------------------------------------~p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~al~~~  106 (228)
T 4i17_A           72 ----------------------------------------NYNLANAYIGKSAAYRDM-----KNNQEYIATLTEGIKAV  106 (228)
T ss_dssp             ----------------------------------------TCSHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHS
T ss_pred             ----------------------------------------CcchHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHC
Confidence                                                    345678899999999888     4999999999999874 


Q ss_pred             -CCH-------HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Q 005877          277 -GEP-------QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE  344 (672)
Q Consensus       277 -~~~-------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~  344 (672)
                       +++       .++..+|.++..    .+++++|+.+|+++++.+    ++.++..+|.+|..          .+..+++
T Consensus       107 p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~----------~~~~~~~  172 (228)
T 4i17_A          107 PGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN----------NGADVLR  172 (228)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH----------HHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH----------HHHHHHH
Confidence             566       568888888888    888888888888888754    34678888888863          2344556


Q ss_pred             HHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877          345 KAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMF  398 (672)
Q Consensus       345 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y  398 (672)
                      ++............+.....    .+++++|+.+|+++++.  +++.+...++.+.
T Consensus       173 ~a~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          173 KATPLASSNKEKYASEKAKA----DAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHGGGTTTCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhcccCCHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            66555432233333434444    56777888888887663  4566666666553

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.61  E-value=1e-13  Score=134.79  Aligned_cols=127  Identities=19%  Similarity=0.139  Sum_probs=65.1

Q ss_pred             CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CH
Q 005877          314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQ  388 (672)
Q Consensus       314 ~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~  388 (672)
                      ++.+++.+|.++..     .+++++|+.+|+++++.   .++.+++++|.++..    .+++++|+.+|+++++..  ++
T Consensus         6 ~~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~   76 (228)
T 4i17_A            6 DPNQLKNEGNDALN-----AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN----IKKYKEAADYFDIAIKKNYNLA   76 (228)
T ss_dssp             CHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCSHH
T ss_pred             CHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCcchH
Confidence            34445555555543     34555555555555442   234455555555555    555555555555555432  34


Q ss_pred             HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh---------hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW---------SSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       389 ~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      .+++.+|.+|..    .+++++|+.+|+++++..|.         .++..+|..+...|++++|+.+|+++++.
T Consensus        77 ~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  146 (228)
T 4i17_A           77 NAYIGKSAAYRD----MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV  146 (228)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence            455555555554    55555555555555554432         22455555555555666666555555544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.61  E-value=1.3e-14  Score=164.45  Aligned_cols=165  Identities=17%  Similarity=0.090  Sum_probs=127.2

Q ss_pred             HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhc
Q 005877          119 AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI  196 (672)
Q Consensus       119 ~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~  196 (672)
                      ..|++++++++||.+|..    .+++++|+.+|++|++  ++++.++++||.+|...|++++|+.+|+++++.       
T Consensus         4 s~P~~a~al~nLG~~~~~----~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-------   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-------   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             CCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            346678888888888888    8888888888888876  688888888888888888888888888888763       


Q ss_pred             cCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH-
Q 005877          197 SKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD-  275 (672)
Q Consensus       197 ~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~-  275 (672)
                                                               +++++.++++||.+|...     +++++|++.|+++++ 
T Consensus        73 -----------------------------------------~P~~~~a~~nLg~~l~~~-----g~~~~A~~~~~kAl~l  106 (723)
T 4gyw_A           73 -----------------------------------------SPTFADAYSNMGNTLKEM-----QDVQGALQCYTRAIQI  106 (723)
T ss_dssp             -----------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh
Confidence                                                     345677777788777777     377888888887766 


Q ss_pred             -cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC
Q 005877          276 -KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN  349 (672)
Q Consensus       276 -~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~  349 (672)
                       ++++.++++||.+|..    .+++++|+.+|+++++.  +++.++.+||.+|..     .+++++|++.|+++++.
T Consensus       107 ~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~-----~g~~~~A~~~~~kal~l  174 (723)
T 4gyw_A          107 NPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI-----VCDWTDYDERMKKLVSI  174 (723)
T ss_dssp             CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-----TTCCTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh-----cccHHHHHHHHHHHHHh
Confidence             3677777888888777    77788888888877764  477777778777775     45777777777777653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.60  E-value=1.5e-14  Score=147.03  Aligned_cols=238  Identities=15%  Similarity=0.131  Sum_probs=174.4

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHH
Q 005877          158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA  237 (672)
Q Consensus       158 ~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa  237 (672)
                      .++.++..+|.++...|++++|+.+|+++++........                                        .
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----------------------------------------~   64 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH----------------------------------------D   64 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCS----------------------------------------S
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC----------------------------------------C
Confidence            445788889999999999999999999987753221000                                        0


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 005877          238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----------GEPQSMEFLGEIYARGAGVERNYTKALEWLT  307 (672)
Q Consensus       238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  307 (672)
                      .+..+.++..+|.+|...     +++++|+.+|+++++.          ..+.++..+|.+|..    .+++++|+.+|+
T Consensus        65 ~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~  135 (311)
T 3nf1_A           65 HPDVATMLNILALVYRDQ-----NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCK  135 (311)
T ss_dssp             SHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCcHHHHHHHHH
Confidence            112467888999999887     4999999999999864          235788999999999    999999999999


Q ss_pred             HHHHc----------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--------C--CHHHHHHHHHHHHcCCC
Q 005877          308 HAARQ----------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------E--EAGGHYNLGVMYYKGIG  367 (672)
Q Consensus       308 ~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~Lg~~y~~g~g  367 (672)
                      ++++.          ....++..+|.+|..     .+++++|+.+|+++++.        .  .+.++..+|.+|..   
T Consensus       136 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~---  207 (311)
T 3nf1_A          136 RALEIREKVLGKDHPDVAKQLNNLALLCQN-----QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK---  207 (311)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---
Confidence            99864          135578899999985     67999999999999875        2  35678899999999   


Q ss_pred             chhcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCC--CccCCHHHHHHHHHHHHHcCC--hhHHHHHHH
Q 005877          368 VKRDVKLACKYFLVAANAG-----------HQKAFYQLAKMFHTGV--GLKKNLHMATALYKLVAERGP--WSSLSRWAL  432 (672)
Q Consensus       368 ~~~~~~~A~~~~~~A~~~~-----------~~~a~~~L~~~y~~g~--g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~  432 (672)
                       .+++++|+.+|+++++..           ....+..++.++..+.  ...+.+.+|+.+++++....+  +.++..+|.
T Consensus       208 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~  286 (311)
T 3nf1_A          208 -QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA  286 (311)
T ss_dssp             -HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence             999999999999998631           1122333333333221  235667778888888887664  457889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHc
Q 005877          433 ESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       433 ~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      ++...|++++|+.+|+++++.
T Consensus       287 ~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          287 LYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHH
Confidence            999999999999999999775

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.60  E-value=1.9e-14  Score=162.91  Aligned_cols=161  Identities=16%  Similarity=0.132  Sum_probs=122.6

Q ss_pred             cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CC
Q 005877          276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EE  351 (672)
Q Consensus       276 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~  351 (672)
                      ++++.++++||.+|..    .|++++|+.+|+++++.  +++.++++||.+|..     .|++++|+.+|++|++.  ++
T Consensus         6 P~~a~al~nLG~~~~~----~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-----~g~~~eA~~~~~~Al~l~P~~   76 (723)
T 4gyw_A            6 PTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-----QGKLQEALMHYKEAIRISPTF   76 (723)
T ss_dssp             CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCC
Confidence            3466777888888877    78888888888887764  477778888888775     56788888888887765  46


Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL  427 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~  427 (672)
                      +.++++||.+|..    .+++++|++.|++|++.  ++..++++||.+|..    .+++++|+.+|+++++..|  +.++
T Consensus        77 ~~a~~nLg~~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a~  148 (723)
T 4gyw_A           77 ADAYSNMGNTLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDAY  148 (723)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHH
Confidence            7788888888877    77888888888887663  467788888888777    7788888888888877763  5677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      .++|.++...|++++|+..|+++++.
T Consensus       149 ~~L~~~l~~~g~~~~A~~~~~kal~l  174 (723)
T 4gyw_A          149 CNLAHCLQIVCDWTDYDERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             hhhhhHHHhcccHHHHHHHHHHHHHh
Confidence            77888888888888888888777654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.59  E-value=1.4e-14  Score=147.22  Aligned_cols=228  Identities=15%  Similarity=0.138  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-------C---CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc
Q 005877          316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------E---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA  385 (672)
Q Consensus       316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  385 (672)
                      .++..+|.+|..     .|++++|+.+|+++++.       +   .+.++..+|.+|..    .+++++|+.+|+++++.
T Consensus        28 ~~~~~l~~~~~~-----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           28 RTLHNLVIQYAS-----QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD----QNKYKDAANLLNDALAI   98 (311)
T ss_dssp             HHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence            344555555543     34555555555555542       1   23455566666666    56666666666666542


Q ss_pred             ------C----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC-------C---hhHHHHHHHHHHhcCCHHHHHH
Q 005877          386 ------G----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-------P---WSSLSRWALESYLKGDVGKAFL  445 (672)
Q Consensus       386 ------~----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~---~~a~~~lg~~~~~~g~~~~A~~  445 (672)
                            +    ...++.++|.+|..    .+++++|+.+|+++++..       +   ..++..+|.++...|++++|+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  174 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY  174 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                  1    23556666777665    667777777777766541       1   2356777888888888888888


Q ss_pred             HHHHHHHc--------C--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC-----------CH
Q 005877          446 LYSRMAEL--------G--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-----------NE  504 (672)
Q Consensus       446 ~~~~a~~~--------g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------~~  504 (672)
                      +|+++++.        .  ...++.++|.++..                .+++++|+.+++++.+..           ..
T Consensus       175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  238 (311)
T 3nf1_A          175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK----------------QGKFKQAETLYKEILTRAHEREFGSVDDENK  238 (311)
T ss_dssp             HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH----------------HTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence            88888665        1  34567889999888                788999999999876521           12


Q ss_pred             HHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          505 HAALLIGDAYYYGR--GTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       505 ~a~~~lG~~y~~g~--g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      ..+..++.++..+.  ...+++.+|..+++++...  ..+.++++||.+|..    .|++++|+++|++|+++.|.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR----QGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHhhc
Confidence            22333333333211  1456677788888888763  567889999999988    89999999999999998664

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.57  E-value=6.3e-13  Score=139.51  Aligned_cols=255  Identities=13%  Similarity=0.027  Sum_probs=192.2

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CH----HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC---
Q 005877          280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ---LY----SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---  349 (672)
Q Consensus       280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~----~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~---  349 (672)
                      .+...+|.++..    .+++++|+.+++++++..   +.    .++..+|.++..     .|++++|+.+++++++.   
T Consensus        15 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~   85 (373)
T 1hz4_A           15 EFNALRAQVAIN----DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-----KGELTRSLALMQQTEQMARQ   85 (373)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHHHHh
Confidence            445667777777    788888888888887642   22    256778888875     56888888888888763   


Q ss_pred             -CCH----HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHcCCCccCCHHHHHHH
Q 005877          350 -EEA----GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG----------HQKAFYQLAKMFHTGVGLKKNLHMATAL  414 (672)
Q Consensus       350 -~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----------~~~a~~~L~~~y~~g~g~~~~~~~A~~~  414 (672)
                       +++    .+..++|.++..    .|++++|+.+|+++++..          ...++.++|.++..    .+++++|..+
T Consensus        86 ~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  157 (373)
T 1hz4_A           86 HDVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEAS  157 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH----hcCHHHHHHH
Confidence             333    446788888888    889999999999887621          23566788888887    8999999999


Q ss_pred             HHHHHHcCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCH-HHHH----HHHHHHHHhCCCCcccCC
Q 005877          415 YKLVAERGP-------WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GYE-VAQS----NAAWILDKYGEGSMCMGE  478 (672)
Q Consensus       415 ~~~a~~~~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~----g~~-~a~~----nla~~l~~~~~~~~~~~~  478 (672)
                      ++++++..+       ..++..+|.++...|++++|..+++++.+.    +.. ....    ..+.++..          
T Consensus       158 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  227 (373)
T 1hz4_A          158 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----------  227 (373)
T ss_dssp             HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH----------
Confidence            999987653       235778899999999999999999999654    221 1111    12333444          


Q ss_pred             CCCCCchHhHHHHHHHHHHHHhCCC------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----C----CHHHHH
Q 005877          479 SGFCTDAERHQCAHSLWWQASEQGN------EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----S----NAQAMF  544 (672)
Q Consensus       479 ~~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~----~~~a~~  544 (672)
                            .+++++|..+++++.....      ..++..+|.++.    ..+++++|..+++++++.    +    ...++.
T Consensus       228 ------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~  297 (373)
T 1hz4_A          228 ------TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI----LLGEFEPAEIVLEELNENARSLRLMSDLNRNLL  297 (373)
T ss_dssp             ------TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ------CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence                  6789999999998766542      335678999999    889999999999998653    2    135788


Q ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877          545 NLGYMHEHGQGLPLDLHLAKRYYDQALEVDP  575 (672)
Q Consensus       545 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  575 (672)
                      .+|.++..    .|+.++|..++++|+++.+
T Consensus       298 ~la~~~~~----~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          298 LLNQLYWQ----AGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             HHHHHHHH----HTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----hCCHHHHHHHHHHHHHHhc
Confidence            89999877    8899999999999998754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.56  E-value=6.2e-14  Score=142.17  Aligned_cols=204  Identities=16%  Similarity=0.105  Sum_probs=123.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCch
Q 005877          298 NYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVK  369 (672)
Q Consensus       298 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~  369 (672)
                      ++++|+.+|+++            |.+|..     .|++++|+.+|+++++.    ++    +.++.++|.+|..    .
T Consensus        32 ~~~~A~~~~~~a------------~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~   90 (292)
T 1qqe_A           32 KFEEAADLCVQA------------ATIYRL-----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS----G   90 (292)
T ss_dssp             HHHHHHHHHHHH------------HHHHHH-----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----T
T ss_pred             cHHHHHHHHHHH------------HHHHHH-----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----C
Confidence            366666666665            556654     55666666666666553    22    3455666666666    6


Q ss_pred             hcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCcc-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCH
Q 005877          370 RDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLK-KNLHMATALYKLVAERGPWSSLSRWALESYLKGDV  440 (672)
Q Consensus       370 ~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~-~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~  440 (672)
                      +++++|+.+|++|++.    ++    ..++.++|.+|..    . +++++|+.+|+++++..+.                
T Consensus        91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~~~~~~Al~~~~~----------------  150 (292)
T 1qqe_A           91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHDYAKAIDCYELAGEWYAQ----------------  150 (292)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHH----------------
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHHHHHHh----------------
Confidence            6666666666666542    21    2344455555543    3 4555555555555443210                


Q ss_pred             HHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--C-------HHHH
Q 005877          441 GKAFLLYSRMAELGY----EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--N-------EHAA  507 (672)
Q Consensus       441 ~~A~~~~~~a~~~g~----~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~-------~~a~  507 (672)
                                  .+.    ..++.++|.++..                .+++++|+.+|+++++..  +       ..++
T Consensus       151 ------------~~~~~~~~~~~~~lg~~~~~----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  202 (292)
T 1qqe_A          151 ------------DQSVALSNKCFIKCADLKAL----------------DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (292)
T ss_dssp             ------------TTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             ------------CCChHHHHHHHHHHHHHHHH----------------hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence                        011    2234445555544                445555555555544321  1       2367


Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCH-----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          508 LLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNA-----QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       508 ~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~-----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      +++|.+|.    ..+++++|+.+|+++++.  +.+     ..+..|+..+..+  -.+++++|+..|++++.++|.
T Consensus       203 ~~lg~~~~----~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~--~~~~~~~A~~~~~~~~~l~~~  272 (292)
T 1qqe_A          203 LKKGLCQL----AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG--DSEQLSEHCKEFDNFMRLDKW  272 (292)
T ss_dssp             HHHHHHHH----HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT--CTTTHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHH----HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcC--CHHHHHHHHHHhccCCccHHH
Confidence            89999999    889999999999999874  222     2456677777643  378899999999999998875

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.56  E-value=3.1e-12  Score=134.22  Aligned_cols=261  Identities=9%  Similarity=-0.040  Sum_probs=197.2

Q ss_pred             HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC---CCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhcc
Q 005877          125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG---GNI----QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS  197 (672)
Q Consensus       125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~---~~~----~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~  197 (672)
                      .+...+|.++..    .+++++|+.++++++..   +++    .++..+|.++...|++++|+.+++++++..+...   
T Consensus        15 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---   87 (373)
T 1hz4_A           15 EFNALRAQVAIN----DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD---   87 (373)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC---
Confidence            456677888777    88999999999998763   332    3677889999999999999999999887543210   


Q ss_pred             CCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-
Q 005877          198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-  276 (672)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-  276 (672)
                                                 +.            .....++..+|.++...     +++++|+.+|+++++. 
T Consensus        88 ---------------------------~~------------~~~~~~~~~la~~~~~~-----G~~~~A~~~~~~al~~~  123 (373)
T 1hz4_A           88 ---------------------------VW------------HYALWSLIQQSEILFAQ-----GFLQTAWETQEKAFQLI  123 (373)
T ss_dssp             ---------------------------CH------------HHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHH
T ss_pred             ---------------------------cH------------HHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHH
Confidence                                       00            01235577888888877     4999999999998763 


Q ss_pred             ---C------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHcCCCCCcCCHHHHH
Q 005877          277 ---G------EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-------LYSAYNGIGYLYVKGYGVEKKNYTKAK  340 (672)
Q Consensus       277 ---~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~~A~  340 (672)
                         +      ...++..+|.+|..    .+++++|..+++++++..       ...++..+|.++..     .|++++|.
T Consensus       124 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~  194 (373)
T 1hz4_A          124 NEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA-----RGDLDNAR  194 (373)
T ss_dssp             HHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH-----HTCHHHHH
T ss_pred             HHhccccCcHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH-----cCCHHHHH
Confidence               1      24567789999988    899999999999998642       24578889999885     67999999


Q ss_pred             HHHHHHHhC----CCH-HHHH----HHHHHHHcCCCchhcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCcc
Q 005877          341 EYFEKAADN----EEA-GGHY----NLGVMYYKGIGVKRDVKLACKYFLVAANAGH------QKAFYQLAKMFHTGVGLK  405 (672)
Q Consensus       341 ~~~~~a~~~----~~~-~a~~----~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~L~~~y~~g~g~~  405 (672)
                      .+++++.+.    +.+ ....    .++.++..    .|++++|..+++++.+...      ...+..++.++..    .
T Consensus       195 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~  266 (373)
T 1hz4_A          195 SQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL----L  266 (373)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH----T
T ss_pred             HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH----CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH----c
Confidence            999998754    222 1111    23445667    7899999999999876432      3356788888887    8


Q ss_pred             CCHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          406 KNLHMATALYKLVAERGP--------WSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       406 ~~~~~A~~~~~~a~~~~~--------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      +++++|+..++++++..+        ..++..+|.++...|++++|..+++++++.
T Consensus       267 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          267 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            999999999999876531        236777899999999999999999999765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.55  E-value=2.4e-13  Score=137.89  Aligned_cols=164  Identities=16%  Similarity=0.068  Sum_probs=134.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCc
Q 005877          262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVEK  333 (672)
Q Consensus       262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~  333 (672)
                      ++++|+.+|+++            |.+|..    .+++++|+.+|+++++.    ++    +.++.++|.+|..     .
T Consensus        32 ~~~~A~~~~~~a------------~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-----~   90 (292)
T 1qqe_A           32 KFEEAADLCVQA------------ATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS-----G   90 (292)
T ss_dssp             HHHHHHHHHHHH------------HHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----T
T ss_pred             cHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-----C
Confidence            588898888887            556777    88999999999998864    33    4678899999986     6


Q ss_pred             CCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCch-hcHHHHHHHHHHHHHcC----C----HHHHHHHHH
Q 005877          334 KNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVK-RDVKLACKYFLVAANAG----H----QKAFYQLAK  396 (672)
Q Consensus       334 ~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~A~~~~----~----~~a~~~L~~  396 (672)
                      |++++|+.+|++|++.    ++    +.++.++|.+|..    . +++++|+.+|++|++..    +    ..++.++|.
T Consensus        91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~  166 (292)
T 1qqe_A           91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD  166 (292)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            7999999999999865    33    4688899999998    7 89999999999998742    2    457889999


Q ss_pred             HHHcCCCccCCHHHHHHHHHHHHHcCCh--h-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          397 MFHTGVGLKKNLHMATALYKLVAERGPW--S-------SLSRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       397 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~-------a~~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      ++..    .+++++|+.+|+++++..+.  .       ++.++|.++...|++++|+.+|+++++..
T Consensus       167 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  229 (292)
T 1qqe_A          167 LKAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (292)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             HHHH----hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            9998    89999999999999987631  1       46788999999999999999999987654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.54  E-value=5.8e-14  Score=146.39  Aligned_cols=283  Identities=13%  Similarity=0.029  Sum_probs=137.3

Q ss_pred             hhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005877          105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYA  184 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~  184 (672)
                      .+++++|..++++.   +++.++..||..+..    .+++++|+..|.++   +++..+..++..+...|++++|+.+++
T Consensus        16 ~~~ld~A~~fae~~---~~~~vWs~La~A~l~----~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~   85 (449)
T 1b89_A           16 IGNLDRAYEFAERC---NEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQ   85 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHhC---CChHHHHHHHHHHHH----cCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            57789999999988   446799999999998    88999999999875   577788999999999999999999998


Q ss_pred             HHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHH
Q 005877          185 ELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRT  264 (672)
Q Consensus       185 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~  264 (672)
                      .+.+..+.        +         .+...+...|.+.|+.+++.++++.    .+..++..+|..++..     +.++
T Consensus        86 ~ark~~~~--------~---------~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~~-----g~ye  139 (449)
T 1b89_A           86 MARKKARE--------S---------YVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDRCYDE-----KMYD  139 (449)
T ss_dssp             ----------------------------------------CHHHHTTTTTC----C---------------------CTT
T ss_pred             HHHHhCcc--------c---------hhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHHHHHc-----CCHH
Confidence            87763211        0         1122466778889999998888753    4556999999999887     5999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Q 005877          265 KALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE  344 (672)
Q Consensus       265 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~  344 (672)
                      +|..+|.++      ..+..||.++..    .+++++|++.|+++   +++.++..++..+..     .++++.|..+..
T Consensus       140 eA~~~Y~~a------~n~~~LA~~L~~----Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~-----~~ef~lA~~~~l  201 (449)
T 1b89_A          140 AAKLLYNNV------SNFGRLASTLVH----LGEYQAAVDGARKA---NSTRTWKEVCFACVD-----GKEFRLAQMCGL  201 (449)
T ss_dssp             THHHHHHHT------TCHHHHHHHHHT----TTCHHHHHHHHHHH---TCHHHHHHHHHHHHH-----TTCHHHHHHTTT
T ss_pred             HHHHHHHHh------hhHHHHHHHHHH----hccHHHHHHHHHHc---CCchhHHHHHHHHHH-----cCcHHHHHHHHH
Confidence            999999977      467899999999    99999999999998   588888888888875     569999977666


Q ss_pred             HHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877          345 KAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG  422 (672)
Q Consensus       345 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~  422 (672)
                      ..+  .+|+-...+..+|.+    .|.+++|+.++++++..  .+...+..||.+|.+=  .+++..+.++.|...+...
T Consensus       202 ~L~--~~ad~l~~lv~~Yek----~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky--~p~k~~ehl~~~~~~ini~  273 (449)
T 1b89_A          202 HIV--VHADELEELINYYQD----RGYFEELITMLEAALGLERAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIP  273 (449)
T ss_dssp             TTT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT--CHHHHHHHHHHHSTTSCHH
T ss_pred             HHH--hCHhhHHHHHHHHHH----CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhcCc
Confidence            422  467767778889998    89999999999999765  4788999999998752  3555566666665444333


Q ss_pred             C-------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877          423 P-------WSSLSRWALESYLKGDVGKAFLLYSR  449 (672)
Q Consensus       423 ~-------~~a~~~lg~~~~~~g~~~~A~~~~~~  449 (672)
                      +       +..+..+...|...++++.|+...-+
T Consensus       274 k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~  307 (449)
T 1b89_A          274 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN  307 (449)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence            2       44577788889999999999876543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.52  E-value=1.2e-12  Score=133.74  Aligned_cols=215  Identities=7%  Similarity=-0.009  Sum_probs=151.5

Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCC---Cchhc-------HHHHHHHHHHHHH-c--CCHHHHHHHHHHHHcC
Q 005877          337 TKAKEYFEKAADN--EEAGGHYNLGVMYYKGI---GVKRD-------VKLACKYFLVAAN-A--GHQKAFYQLAKMFHTG  401 (672)
Q Consensus       337 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~---g~~~~-------~~~A~~~~~~A~~-~--~~~~a~~~L~~~y~~g  401 (672)
                      ++|+..|+++++.  +++++++++|.++....   ...++       .++|+..|++|++ .  ++..++..+|.++.. 
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~-  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence            5666777777654  56777777776664200   00133       3777777777776 2  356677777777776 


Q ss_pred             CCccCCHHHHHHHHHHHHHcCC--hh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCccc
Q 005877          402 VGLKKNLHMATALYKLVAERGP--WS-SLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCM  476 (672)
Q Consensus       402 ~g~~~~~~~A~~~~~~a~~~~~--~~-a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~  476 (672)
                         .+++++|...|+++++..|  +. ++..+|..+...|++++|+..|+++++..  ....+...+.+...        
T Consensus       112 ---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~--------  180 (308)
T 2ond_A          112 ---RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY--------  180 (308)
T ss_dssp             ---TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH--------
T ss_pred             ---cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------
Confidence               6777788888888777664  33 66777777777778888888888877654  23333323332111        


Q ss_pred             CCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHH
Q 005877          477 GESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ------SNAQAMFNLGY  548 (672)
Q Consensus       477 ~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~a~~~Lg~  548 (672)
                             ..+++++|+..|++++  .++++.++..+|.++.    ..+++++|+..|+++++.      .+...+..++.
T Consensus       181 -------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~  249 (308)
T 2ond_A          181 -------CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS----HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA  249 (308)
T ss_dssp             -------TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred             -------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence                   0346778888888764  4677899999999998    889999999999999984      24567788888


Q ss_pred             HHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          549 MHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       549 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ++..    .|+.+.|...++++++..|+..
T Consensus       250 ~~~~----~g~~~~a~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          250 FESN----IGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHHH----HSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHH----cCCHHHHHHHHHHHHHHccccc
Confidence            8766    7899999999999999998754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.52  E-value=1.9e-13  Score=136.54  Aligned_cols=145  Identities=19%  Similarity=0.160  Sum_probs=101.7

Q ss_pred             cCCHHHHHHHHHHHHHc-------C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC------C----CHHHH
Q 005877          296 ERNYTKALEWLTHAARQ-------Q---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN------E----EAGGH  355 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~------~----~~~a~  355 (672)
                      .+++++|+.+|+++++.       +   .+.++..+|.+|..     .+++++|+.+|+++++.      +    .+.++
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-----QNKYKEAAHLLNDALAIREKTLGKDHPAVAATL   88 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence            45555555555555541       1   34556677777764     45777777777777643      1    34567


Q ss_pred             HHHHHHHHcCCCchhcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHc----
Q 005877          356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA----------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER----  421 (672)
Q Consensus       356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~----  421 (672)
                      .++|.+|..    .+++++|+.+|+++++.          ....++.++|.+|..    .+++++|+.+|+++++.    
T Consensus        89 ~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           89 NNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             HHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHh
Confidence            777888777    77888888888877653          134677788888877    78888888888888776    


Q ss_pred             ----CC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          422 ----GP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       422 ----~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                          .+  ..++..+|.++...|++++|+.+++++++.
T Consensus       161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                22  346778888888999999999999988764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.51  E-value=4e-13  Score=128.80  Aligned_cols=182  Identities=14%  Similarity=0.156  Sum_probs=111.3

Q ss_pred             CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHH
Q 005877          351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS  428 (672)
Q Consensus       351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~  428 (672)
                      .++..+..|..+..    .+++++|+.+|+++++..  ++.++++++.        ......            .+....
T Consensus         3 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~--------~~~~~~------------~~~~~~   58 (208)
T 3urz_A            3 SVDEMLQKVSAAIE----AGQNGQAVSYFRQTIALNIDRTEMYYWTNV--------DKNSEI------------SSKLAT   58 (208)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHS--------CTTSHH------------HHHHHH
T ss_pred             CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHhhh--------cchhhh------------hHHHHH
Confidence            34556666666666    667777777777776644  3344444210        000000            011223


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH--HhCCCH
Q 005877          429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA--SEQGNE  504 (672)
Q Consensus       429 ~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~  504 (672)
                      .+|.++...|++++|+..|+++++.  +++.++.++|.++..                .+++++|+.+|+++  .+++++
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----------------~g~~~~A~~~~~~al~~~P~~~  122 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVC----------------RGQEKDALRMYEKILQLEADNL  122 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------HTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHcCCCCH
Confidence            3666666666666666666666443  356666666666665                55666666666654  346678


Q ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSN-AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ++++++|.+|+.-  ...+...+...|+++..... ..+.+++|..+..    .+++++|+.+|++|++++|+..
T Consensus       123 ~a~~~lg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          123 AANIFLGNYYYLT--AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF----TTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHHHHHHHHHHH--hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCHH
Confidence            8888888888621  12345667778888776533 3467888888876    7899999999999999999754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.51  E-value=1.8e-12  Score=128.88  Aligned_cols=188  Identities=16%  Similarity=0.166  Sum_probs=139.2

Q ss_pred             hCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877          348 DNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG  422 (672)
Q Consensus       348 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~---~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~  422 (672)
                      ...++.+++.+|..+..    .+++++|+..|+++++.  ++   +.+++.+|.+|..    .+++++|+..|+++++..
T Consensus        11 ~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYN----QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ----NKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             CCSSHHHHHHHHHHHHH----TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHC
Confidence            34567788888888887    78888888888888764  34   6788888888887    788888888888888775


Q ss_pred             C-----hhHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHh
Q 005877          423 P-----WSSLSRWALESYL--------KGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAER  487 (672)
Q Consensus       423 ~-----~~a~~~lg~~~~~--------~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~  487 (672)
                      |     +.+++.+|.+++.        .|++++|+..|+++++..  ++.+...+..+...                   
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~-------------------  143 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL-------------------  143 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH-------------------
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH-------------------
Confidence            3     3467788888888        888888888888887653  22222222221111                   


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHc-CCC-----C
Q 005877          488 HQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--S---NAQAMFNLGYMHEH-GQG-----L  556 (672)
Q Consensus       488 ~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~---~~~a~~~Lg~~y~~-g~g-----~  556 (672)
                                  .......++.+|.+|+    ..+++++|+.+|+++++.  +   .+.+++.+|.+|.. |..     .
T Consensus       144 ------------~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~  207 (261)
T 3qky_A          144 ------------RAKLARKQYEAARLYE----RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQ  207 (261)
T ss_dssp             ------------HHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGH
T ss_pred             ------------HHHHHHHHHHHHHHHH----HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcc
Confidence                        1112344789999999    899999999999999874  3   46899999999975 110     0


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCc
Q 005877          557 PLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       557 ~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      .+++++|+.+|+++++..|++.
T Consensus       208 ~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          208 PERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCT
T ss_pred             cchHHHHHHHHHHHHHHCCCCh
Confidence            2899999999999999999875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.51  E-value=2.6e-13  Score=135.44  Aligned_cols=215  Identities=13%  Similarity=0.097  Sum_probs=161.0

Q ss_pred             hccCChHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----------CCHH
Q 005877          221 KSRGEDDEAFQILEYQAQ----------KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----------GEPQ  280 (672)
Q Consensus       221 ~~~g~~~~Ai~~~~~aa~----------~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~  280 (672)
                      ...|++++|+.+++++.+          +..+.++..+|.+|...     +++++|+.+|+++++.          ..+.
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-----NKYKEAAHLLNDALAIREKTLGKDHPAVAA   86 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence            356677777777777654          23578899999999988     4999999999999864          2367


Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-
Q 005877          281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQ----------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-  349 (672)
Q Consensus       281 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-  349 (672)
                      ++..+|.+|..    .+++++|+.+|+++++.          ....++..+|.+|..     .|++++|+.+|+++++. 
T Consensus        87 ~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~  157 (283)
T 3edt_B           87 TLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN-----QGKAEEVEYYYRRALEIY  157 (283)
T ss_dssp             HHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHH
Confidence            89999999999    99999999999999865          245678999999986     67999999999999876 


Q ss_pred             -------C--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCC--CccCC
Q 005877          350 -------E--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----------HQKAFYQLAKMFHTGV--GLKKN  407 (672)
Q Consensus       350 -------~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----------~~~a~~~L~~~y~~g~--g~~~~  407 (672)
                             .  ...++.++|.+|..    .+++++|+.+|+++++..           ....+..++..+..+.  .....
T Consensus       158 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (283)
T 3edt_B          158 ATRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP  233 (283)
T ss_dssp             HHHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH
Confidence                   2  35688999999999    999999999999998641           2345556666655422  12334


Q ss_pred             HHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          408 LHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       408 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      +.++..+++......  .+.++..+|.++...|++++|+.+|+++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            555555555443322  2346889999999999999999999999864

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.49  E-value=5.3e-14  Score=146.66  Aligned_cols=279  Identities=11%  Similarity=0.064  Sum_probs=145.5

Q ss_pred             hhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCC
Q 005877          215 NKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGA  293 (672)
Q Consensus       215 ~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~  293 (672)
                      .++..+...|++++|++.|.++   .++..+..++..+...     +++++|+.+++.+.+. .++.....|+.+|.+  
T Consensus        37 ~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~-----g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~K--  106 (449)
T 1b89_A           37 QLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTS-----GNWEELVKYLQMARKKARESYVETELIFALAK--  106 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHhCccchhHHHHHHHHHH--
Confidence            3455555555555555555432   4555666666666554     4888888888877764 345667778888888  


Q ss_pred             CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHH
Q 005877          294 GVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVK  373 (672)
Q Consensus       294 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~  373 (672)
                        .+++.++.++++.    ++..++..+|..+..     .|.+++|+.+|.++      ..+..||.++.+    .++++
T Consensus       107 --lg~l~e~e~f~~~----pn~~a~~~IGd~~~~-----~g~yeeA~~~Y~~a------~n~~~LA~~L~~----Lg~yq  165 (449)
T 1b89_A          107 --TNRLAELEEFING----PNNAHIQQVGDRCYD-----EKMYDAAKLLYNNV------SNFGRLASTLVH----LGEYQ  165 (449)
T ss_dssp             ----CHHHHTTTTTC----C---------------------CTTTHHHHHHHT------TCHHHHHHHHHT----TTCHH
T ss_pred             --hCCHHHHHHHHcC----CcHHHHHHHHHHHHH-----cCCHHHHHHHHHHh------hhHHHHHHHHHH----hccHH
Confidence              7888888877753    455688888888875     56889999999876      467788999988    88999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          374 LACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       374 ~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      +|++.|++|   +++..+..+...+..    .++++.|..+....+  .+++-...+...|...|.+++|+.++++++..
T Consensus       166 ~AVea~~KA---~~~~~Wk~v~~aCv~----~~ef~lA~~~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l  236 (449)
T 1b89_A          166 AAVDGARKA---NSTRTWKEVCFACVD----GKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGL  236 (449)
T ss_dssp             HHHHHHHHH---TCHHHHHHHHHHHHH----TTCHHHHHHTTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHc---CCchhHHHHHHHHHH----cCcHHHHHHHHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence            999999988   578888887777776    789999977666422  34555556777888999999999999999655


Q ss_pred             C--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--C-----CCHHHHHHHHHHHHhCCCCCCCH
Q 005877          454 G--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--Q-----GNEHAALLIGDAYYYGRGTQRDY  524 (672)
Q Consensus       454 g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~-----~~~~a~~~lG~~y~~g~g~~~d~  524 (672)
                      +  +......+|.+|.++.              +++..+.++.|...+.  +     .++..|..+..+|.    .-+++
T Consensus       237 e~ah~~~ftel~il~~ky~--------------p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~----~~~e~  298 (449)
T 1b89_A          237 ERAHMGMFTELAILYSKFK--------------PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD----KYEEY  298 (449)
T ss_dssp             TTCCHHHHHHHHHHHHTTC--------------HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH----HTTCH
T ss_pred             cHHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH----hhchH
Confidence            4  6777788999988753              7788888888874322  2     34556778888888    78999


Q ss_pred             HHHHHHHHHHH--------------hcCCHHHHHHHHHHHH
Q 005877          525 ERAAEAYMHAR--------------SQSNAQAMFNLGYMHE  551 (672)
Q Consensus       525 ~~A~~~~~~A~--------------~~~~~~a~~~Lg~~y~  551 (672)
                      +.|+..+....              +..+.+.+|..-..|.
T Consensus       299 d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl  339 (449)
T 1b89_A          299 DNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL  339 (449)
T ss_dssp             HHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence            99998766642              3466676666665554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.48  E-value=8.7e-12  Score=127.29  Aligned_cols=211  Identities=9%  Similarity=-0.045  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHh--CCCHHHHHHHHHHHhcc-------CCH-------HHHHHHHHHHHHHHHhhhhccCCCCcccchhc
Q 005877          145 GKAFLYHHFAAE--GGNIQSKMAVAYTYLRQ-------DMH-------DKAVKLYAELAEIAVNSFLISKDSPVIEPIRI  208 (672)
Q Consensus       145 ~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~-------~~~-------~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l  208 (672)
                      ++|+..|++++.  +.++.+++.+|..+...       |++       ++|+..|+++++.                   
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-------------------   93 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------------------   93 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-------------------
Confidence            678888888876  68888888888877542       443       4444444444320                   


Q ss_pred             ccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHH-HHHHH
Q 005877          209 HNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQ-SMEFL  285 (672)
Q Consensus       209 ~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~-a~~~L  285 (672)
                                                  ..++++.++..+|.++...     +++++|+..|+++++.  .++. ++..+
T Consensus        94 ----------------------------~~p~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~~  140 (308)
T 2ond_A           94 ----------------------------LLKKNMLLYFAYADYEESR-----MKYEKVHSIYNRLLAIEDIDPTLVYIQY  140 (308)
T ss_dssp             ----------------------------TTTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTSSSSCTHHHHHHH
T ss_pred             ----------------------------hCcccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhccccCccHHHHHH
Confidence                                        1235677888888888776     3888888888888874  3454 77778


Q ss_pred             HHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 005877          286 GEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVM  361 (672)
Q Consensus       286 g~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~  361 (672)
                      |.++..    .+++++|+..|+++++.+  ....+...+.+...    ..|++++|+..|+++++.  +++.++..+|.+
T Consensus       141 ~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  212 (308)
T 2ond_A          141 MKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY----CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY  212 (308)
T ss_dssp             HHHHHH----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH----TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHH----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            887777    777888888888887643  33444444444321    124677777777777653  466666666666


Q ss_pred             HHcCCCchhcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC
Q 005877          362 YYKGIGVKRDVKLACKYFLVAANA------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP  423 (672)
Q Consensus       362 y~~g~g~~~~~~~A~~~~~~A~~~------~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~  423 (672)
                      +..    .|++++|+..|+++++.      .....+..++.++..    .|+.++|..+++++++..|
T Consensus       213 ~~~----~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~----~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          213 LSH----LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN----IGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHT----TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHTT
T ss_pred             HHH----CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcc
Confidence            666    66677777777776663      133455555555554    5566666666666665544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.45  E-value=1.3e-12  Score=129.90  Aligned_cols=174  Identities=14%  Similarity=0.162  Sum_probs=120.8

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877          237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAAR  311 (672)
Q Consensus       237 a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  311 (672)
                      .++.++..++.+|..++..     +++++|+..|+++++.  ++   +.+++.+|.+|..    .+++++|+.+|+++++
T Consensus        10 ~~~~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~   80 (261)
T 3qky_A           10 LRHSSPQEAFERAMEFYNQ-----GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ----NKEYLLAASEYERFIQ   80 (261)
T ss_dssp             -CCSSHHHHHHHHHHHHHT-----TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH----hCcHHHHHHHHHHHHH
Confidence            3456889999999999888     4999999999999874  45   7899999999998    8999999999999987


Q ss_pred             c-----CCHHHHHHHHHHHHcC---CCCCcCCHHHHHHHHHHHHhCC--CHHHH-----------------HHHHHHHHc
Q 005877          312 Q-----QLYSAYNGIGYLYVKG---YGVEKKNYTKAKEYFEKAADNE--EAGGH-----------------YNLGVMYYK  364 (672)
Q Consensus       312 ~-----~~~~a~~~Lg~~y~~g---~g~~~~~~~~A~~~~~~a~~~~--~~~a~-----------------~~Lg~~y~~  364 (672)
                      .     ..+.+++.+|.++...   .....+++++|+.+|+++++..  ++.+.                 +.+|.+|..
T Consensus        81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~  160 (261)
T 3qky_A           81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER  160 (261)
T ss_dssp             HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5     2367889999998730   0011468999999999998752  33333                 566666666


Q ss_pred             CCCchhcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcC-CC-----ccCCHHHHHHHHHHHHHcCC
Q 005877          365 GIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTG-VG-----LKKNLHMATALYKLVAERGP  423 (672)
Q Consensus       365 g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~L~~~y~~g-~g-----~~~~~~~A~~~~~~a~~~~~  423 (672)
                          .+++++|+..|+++++..     .+.+++++|.+|..- ..     ..+++++|+..|+++++..|
T Consensus       161 ----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p  226 (261)
T 3qky_A          161 ----RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP  226 (261)
T ss_dssp             ----TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred             ----ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence                666666666666665532     235666666665530 00     01556666666666665554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.44  E-value=1.4e-12  Score=124.92  Aligned_cols=161  Identities=16%  Similarity=0.148  Sum_probs=86.1

Q ss_pred             CchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHH----------------HHHHhhcCCcccCCHHHH
Q 005877           86 NGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSV----------------LGFLYGMGMMRERNKGKA  147 (672)
Q Consensus        86 ~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~----------------Lg~~y~~G~g~~~d~~~A  147 (672)
                      +.++..|..++.       .+++++|+..|+++.  +|+++.+++.                +|.+|..    .+++++|
T Consensus         5 ~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A   73 (208)
T 3urz_A            5 DEMLQKVSAAIE-------AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK----NRNYDKA   73 (208)
T ss_dssp             HHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred             HHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH----CCCHHHH
Confidence            344555655553       466777777777743  3455666666                5555555    5555555


Q ss_pred             HHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCC
Q 005877          148 FLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGE  225 (672)
Q Consensus       148 ~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~  225 (672)
                      +.+|+++++  ++++.+++.+|.+|...|++++|+.+|+++++                                     
T Consensus        74 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------------------------------  116 (208)
T 3urz_A           74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ-------------------------------------  116 (208)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------------------------------------
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------------
Confidence            555555543  45555555555555555555555555555544                                     


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcCCCCcCCHHHHHH
Q 005877          226 DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-PQSMEFLGEIYARGAGVERNYTKALE  304 (672)
Q Consensus       226 ~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~y~~g~g~~~~~~~A~~  304 (672)
                                 .+++++.+++.+|.+|+..+   ..+...+...|++++.... ..+++.+|..+..    .+++++|+.
T Consensus       117 -----------~~P~~~~a~~~lg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~----~~~~~~A~~  178 (208)
T 3urz_A          117 -----------LEADNLAANIFLGNYYYLTA---EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF----TTRYEKARN  178 (208)
T ss_dssp             -----------HCTTCHHHHHHHHHHHHHHH---HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH----HHTHHHHHH
T ss_pred             -----------cCCCCHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH----ccCHHHHHH
Confidence                       23445666666666654331   1234445555555544321 2245555666555    566666666


Q ss_pred             HHHHHHHc
Q 005877          305 WLTHAARQ  312 (672)
Q Consensus       305 ~~~~a~~~  312 (672)
                      +|+++++.
T Consensus       179 ~~~~al~l  186 (208)
T 3urz_A          179 SLQKVILR  186 (208)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHHHh
Confidence            66666654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.44  E-value=4.1e-12  Score=117.91  Aligned_cols=165  Identities=15%  Similarity=0.066  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHH
Q 005877          353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS  428 (672)
Q Consensus       353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~  428 (672)
                      .+++.+|.++..    .+++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+.+++++++..+  +.++.
T Consensus         9 ~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~   80 (186)
T 3as5_A            9 VYYRDKGISHAK----AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK----TGAVDRGTELLERSLADAPDNVKVAT   80 (186)
T ss_dssp             HHHHHHHHHHHH----HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            344555555555    55666666666655442  345555555555554    5555555555555555432  33444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHH
Q 005877          429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAAL  508 (672)
Q Consensus       429 ~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~  508 (672)
                      .+|..+...|++++|+.+++++++.                                              .+.++.+++
T Consensus        81 ~~a~~~~~~~~~~~A~~~~~~~~~~----------------------------------------------~~~~~~~~~  114 (186)
T 3as5_A           81 VLGLTYVQVQKYDLAVPLLIKVAEA----------------------------------------------NPINFNVRF  114 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH----------------------------------------------CTTCHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhc----------------------------------------------CcHhHHHHH
Confidence            4555555555555555555444332                                              245567778


Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877          509 LIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       509 ~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  579 (672)
                      .+|.++.    ..+++++|+.+++++++.  .++.+++.+|.+|..    .|++++|+.+++++++.+|+...
T Consensus       115 ~~a~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          115 RLGVALD----NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ----MGRHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             HHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHCCCG
T ss_pred             HHHHHHH----HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCchh
Confidence            8899988    789999999999998764  678999999999987    78999999999999998776543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.42  E-value=1.5e-12  Score=147.99  Aligned_cols=176  Identities=13%  Similarity=0.030  Sum_probs=132.6

Q ss_pred             HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHH--------h--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877          119 AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAA--------E--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE  188 (672)
Q Consensus       119 ~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~--------~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~  188 (672)
                      .+++++.+.+..|   ..    .+++++|+..|++++        .  +++..+++.+|.+|...|++++|+..|+++++
T Consensus       389 ~~p~~~~a~~~~a---~~----~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~  461 (681)
T 2pzi_A          389 VDPTDVAASVLQA---TV----LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE  461 (681)
T ss_dssp             CCTTSTTHHHHHH---TT----TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCCcchHHhhc---cc----ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence            3456677777666   22    678888888888887        3  56778888888888888888888888888765


Q ss_pred             HHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHH
Q 005877          189 IAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALM  268 (672)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~  268 (672)
                                                                      .+++++.+++.+|.+|...     +++++|+.
T Consensus       462 ------------------------------------------------~~p~~~~a~~~lg~~~~~~-----g~~~~A~~  488 (681)
T 2pzi_A          462 ------------------------------------------------RVGWRWRLVWYRAVAELLT-----GDYDSATK  488 (681)
T ss_dssp             ------------------------------------------------HHCCCHHHHHHHHHHHHHH-----TCHHHHHH
T ss_pred             ------------------------------------------------cCcchHHHHHHHHHHHHHc-----CCHHHHHH
Confidence                                                            3456778888888888877     48888888


Q ss_pred             HHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Q 005877          269 WFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE  344 (672)
Q Consensus       269 ~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~  344 (672)
                      .|+++++  ++++.+++++|.+|..    .+++++ +.+|+++++.  +++.+++++|.+|..     .|++++|+.+|+
T Consensus       489 ~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~-----~g~~~~A~~~~~  558 (681)
T 2pzi_A          489 HFTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA-----EGDRVGAVRTLD  558 (681)
T ss_dssp             HHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH-----cCCHHHHHHHHH
Confidence            8888876  4677888888888887    788888 8888888764  477788888888875     568888888888


Q ss_pred             HHHhCC--CHHHHHHHHHHHHc
Q 005877          345 KAADNE--EAGGHYNLGVMYYK  364 (672)
Q Consensus       345 ~a~~~~--~~~a~~~Lg~~y~~  364 (672)
                      ++++.+  ++.+++++|.++..
T Consensus       559 ~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          559 EVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             TSCTTSTTHHHHHHHHHHHTC-
T ss_pred             hhcccCcccHHHHHHHHHHHHc
Confidence            887653  57777888887765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.40  E-value=1.5e-11  Score=125.59  Aligned_cols=191  Identities=13%  Similarity=0.076  Sum_probs=154.6

Q ss_pred             ccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005877          172 RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLF  251 (672)
Q Consensus       172 ~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~  251 (672)
                      ..|++++|..+++++.+..+..                         ++...+++++|+..|+++            |.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~-------------------------~~~~~~~~~~A~~~~~~a------------~~~   45 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS-------------------------FMKWKPDYDSAASEYAKA------------AVA   45 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC-------------------------SSSCSCCHHHHHHHHHHH------------HHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc-------------------------ccCCCCCHHHHHHHHHHH------------HHH
Confidence            4578899999999987754210                         111147899999999886            456


Q ss_pred             HHhcCCCcccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----H
Q 005877          252 YYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----Y  315 (672)
Q Consensus       252 y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~  315 (672)
                      |...     +++++|+.+|+++++.    ++    ..++..+|.+|..    .+++++|+.+|+++++.    ++    .
T Consensus        46 ~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~~~~g~~~~~a  116 (307)
T 2ifu_A           46 FKNA-----KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD----LQRMPEAVQYIEKASVMYVENGTPDTAA  116 (307)
T ss_dssp             HHHT-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHc-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            6666     4999999999999874    33    5688999999998    89999999999999864    33    4


Q ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--
Q 005877          316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--  385 (672)
Q Consensus       316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--  385 (672)
                      .++.++|.+|..      +++++|+.+|++|++.    ++    +.++.++|.+|..    .+++++|+.+|+++++.  
T Consensus       117 ~~~~~lg~~~~~------g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~  186 (307)
T 2ifu_A          117 MALDRAGKLMEP------LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKSMYK  186 (307)
T ss_dssp             HHHHHHHHHHTT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Confidence            578899999963      6999999999999875    22    5788999999999    99999999999999873  


Q ss_pred             --CC----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC
Q 005877          386 --GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP  423 (672)
Q Consensus       386 --~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~  423 (672)
                        +.    ..++..+|.++..    .+++++|+.+|++++ ..|
T Consensus       187 ~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al-~~p  225 (307)
T 2ifu_A          187 EMENYPTCYKKCIAQVLVQLH----RADYVAAQKCVRESY-SIP  225 (307)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHT-TST
T ss_pred             HcCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHh-CCC
Confidence              22    3477888888887    799999999999999 654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.39  E-value=1.7e-12  Score=147.40  Aligned_cols=176  Identities=13%  Similarity=0.015  Sum_probs=149.1

Q ss_pred             CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--------h--CCChHHHHHHHHHhhcCCcccCCHHHHHH
Q 005877           80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--------M--EGDPHARSVLGFLYGMGMMRERNKGKAFL  149 (672)
Q Consensus        80 ~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--------~--~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~  149 (672)
                      .+++++.+.+..+.          ..+++++|+..|+++.        .  ++++.+++.+|.+|..    .+++++|+.
T Consensus       389 ~~p~~~~a~~~~a~----------~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~----~g~~~~A~~  454 (681)
T 2pzi_A          389 VDPTDVAASVLQAT----------VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD----LGDVAKATR  454 (681)
T ss_dssp             CCTTSTTHHHHHHT----------TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH----HTCHHHHHH
T ss_pred             CCCCCcchHHhhcc----------cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh----cCCHHHHHH
Confidence            56777777776661          2688999999999987        3  5789999999999999    999999999


Q ss_pred             HHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChH
Q 005877          150 YHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDD  227 (672)
Q Consensus       150 ~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~  227 (672)
                      .|+++++  +++..+++.+|.+|...|++++|+..|+++++.                                      
T Consensus       455 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------------------------------------  496 (681)
T 2pzi_A          455 KLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--------------------------------------  496 (681)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------------------
T ss_pred             HHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------
Confidence            9999986  799999999999999999999999999999874                                      


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHH
Q 005877          228 EAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEW  305 (672)
Q Consensus       228 ~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  305 (672)
                                +++++.+++++|.+|...     +++++ +++|+++++  ++++.+++++|.+|..    .+++++|+.+
T Consensus       497 ----------~P~~~~~~~~lg~~~~~~-----g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~  556 (681)
T 2pzi_A          497 ----------FPGELAPKLALAATAELA-----GNTDE-HKFYQTVWSTNDGVISAAFGLARARSA----EGDRVGAVRT  556 (681)
T ss_dssp             ----------STTCSHHHHHHHHHHHHH-----TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred             ----------CCCChHHHHHHHHHHHHc-----CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH----cCCHHHHHHH
Confidence                      456778888888888887     48888 888888876  4688889999999988    8899999999


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHHc
Q 005877          306 LTHAARQ--QLYSAYNGIGYLYVK  327 (672)
Q Consensus       306 ~~~a~~~--~~~~a~~~Lg~~y~~  327 (672)
                      |+++++.  ++..++.++|.++..
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHhhcccCcccHHHHHHHHHHHHc
Confidence            9988765  467788888888865

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.38  E-value=2.5e-11  Score=112.59  Aligned_cols=158  Identities=17%  Similarity=0.174  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHH
Q 005877          279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGG  354 (672)
Q Consensus       279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a  354 (672)
                      ...++.+|.++..    .+++++|+.+|+++++.  .++.++..+|.++..     .+++++|+.+++++++.  .++.+
T Consensus         8 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~   78 (186)
T 3as5_A            8 QVYYRDKGISHAK----AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-----TGAVDRGTELLERSLADAPDNVKV   78 (186)
T ss_dssp             HHHHHHHHHHHHH----HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCCHHH
Confidence            4566778888887    88888998888888764  477888888888875     56889999999888765  47888


Q ss_pred             HHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHH
Q 005877          355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRW  430 (672)
Q Consensus       355 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l  430 (672)
                      +..+|.++..    .+++++|+.+|+++.+.  .++.++..+|.++..    .+++++|+.+++++++..+  +.++..+
T Consensus        79 ~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l  150 (186)
T 3as5_A           79 ATVLGLTYVQ----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLRPNEGKVHRAI  150 (186)
T ss_dssp             HHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHH----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCccchHHHHHH
Confidence            8889998888    88999999999988774  467888888988887    8899999999999888764  5678888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc
Q 005877          431 ALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       431 g~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      |.++...|++++|+.+++++++.
T Consensus       151 a~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          151 AFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHc
Confidence            99999999999999999988654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.37  E-value=3.8e-11  Score=116.44  Aligned_cols=194  Identities=10%  Similarity=0.019  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--C
Q 005877          315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--H  387 (672)
Q Consensus       315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~  387 (672)
                      +.+++.+|..+..     .|++++|+..|+++++..  +   +.+++.+|.+|..    .+++++|+..|+++++..  +
T Consensus         4 ~~~~~~~a~~~~~-----~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~P~~   74 (225)
T 2yhc_A            4 PNEIYATAQQKLQ-----DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPTH   74 (225)
T ss_dssp             HHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCC
Confidence            4455566666654     556666666666665531  1   3456666666666    566666666666665532  2


Q ss_pred             H---HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHH---
Q 005877          388 Q---KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQ---  459 (672)
Q Consensus       388 ~---~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~---  459 (672)
                      +   .+++++|.++..    .+..              ....+..++..+...|++++|+..|+++++..  .+.+.   
T Consensus        75 ~~~~~a~~~~g~~~~~----~~~~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~  136 (225)
T 2yhc_A           75 PNIDYVMYMRGLTNMA----LDDS--------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT  136 (225)
T ss_dssp             TTHHHHHHHHHHHHHH----HHC----------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred             CcHHHHHHHHHHHHHh----hhhh--------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence            1   355566655543    1100              00112223333444667778888887776653  22221   


Q ss_pred             HHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--
Q 005877          460 SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--  537 (672)
Q Consensus       460 ~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--  537 (672)
                      ..++.+...                                  .....+.+|.+|+    ..+++.+|+..|+++++.  
T Consensus       137 ~~l~~~~~~----------------------------------~~~~~~~~a~~~~----~~~~~~~A~~~~~~~l~~~p  178 (225)
T 2yhc_A          137 KRLVFLKDR----------------------------------LAKYEYSVAEYYT----ERGAWVAVVNRVEGMLRDYP  178 (225)
T ss_dssp             HHHHHHHHH----------------------------------HHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHH----------------------------------HHHHHHHHHHHHH----HcCcHHHHHHHHHHHHHHCc
Confidence            111111100                                  1223468899999    899999999999999874  


Q ss_pred             CCH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          538 SNA---QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       538 ~~~---~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      +++   .+++.+|.+|..    .|++++|+++++++....|+.
T Consensus       179 ~~~~~~~a~~~l~~~~~~----~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          179 DTQATRDALPLMENAYRQ----MQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             TSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHCCSCC
T ss_pred             CCCccHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCc
Confidence            454   789999999998    899999999999999888775

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.37  E-value=1.7e-12  Score=117.40  Aligned_cols=96  Identities=14%  Similarity=0.207  Sum_probs=42.9

Q ss_pred             cCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhc
Q 005877          296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD  371 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~  371 (672)
                      .+++++|+..+++++...  ++.+.+.||.+|..     .+++++|+.+|+++++.  +++.+++++|.+|..    .++
T Consensus        10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-----~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~~   80 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE-----AKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL----EEN   80 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTC
T ss_pred             cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCc
Confidence            444444444444444321  23334444444443     33444444444444433  244444444444444    444


Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHHHHHHHc
Q 005877          372 VKLACKYFLVAAN--AGHQKAFYQLAKMFHT  400 (672)
Q Consensus       372 ~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~  400 (672)
                      +++|+.+|+++++  ++++.+++++|.+|..
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  111 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCK  111 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4444444444443  2234444444444443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.37  E-value=1.9e-12  Score=117.06  Aligned_cols=136  Identities=17%  Similarity=0.166  Sum_probs=115.4

Q ss_pred             HHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHH
Q 005877          320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLA  395 (672)
Q Consensus       320 ~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~  395 (672)
                      .||.++..     ++++++|+..+++++...  ++.+++.||.+|..    .+++++|+++|+++++  ++++.+++++|
T Consensus         2 ~LG~~~~~-----~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~~p~~~~a~~~lg   72 (150)
T 4ga2_A            2 PLGSMRRS-----KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE----AKEYDLAKKYICTYINVQERDPKAHRFLG   72 (150)
T ss_dssp             -----CCC-----HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HhHHHHHH-----cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            47888874     679999999999998764  67788999999999    9999999999999987  45899999999


Q ss_pred             HHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHH-HHHHHH--cCCHHHHHHHHHHHHH
Q 005877          396 KMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLL-YSRMAE--LGYEVAQSNAAWILDK  468 (672)
Q Consensus       396 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~-~~~a~~--~g~~~a~~nla~~l~~  468 (672)
                      .+|..    .+++++|+.+|+++++..|  +.+++++|.++...|++++|... +++|++  ++++.+....+.++..
T Consensus        73 ~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A           73 LLYEL----EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHH----cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            99998    9999999999999999885  67899999999999999877765 588865  5688888888888765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.34  E-value=6e-11  Score=120.96  Aligned_cols=99  Identities=23%  Similarity=0.225  Sum_probs=60.5

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCcc
Q 005877          334 KNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLK  405 (672)
Q Consensus       334 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~  405 (672)
                      +++++|+.+|.++            |.+|..    .+++++|+.+|.++++.    ++    ..++.++|.+|..    .
T Consensus        30 ~~~~~A~~~~~~a------------~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~   89 (307)
T 2ifu_A           30 PDYDSAASEYAKA------------AVAFKN----AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD----L   89 (307)
T ss_dssp             CCHHHHHHHHHHH------------HHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----T
T ss_pred             CCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----C
Confidence            3666666666654            345555    56666666666666542    11    3456666666665    5


Q ss_pred             CCHHHHHHHHHHHHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          406 KNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       406 ~~~~~A~~~~~~a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      +++++|+.+|+++++..    +    ..++.++|.++.. |++++|+.+|++|++.
T Consensus        90 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~  144 (307)
T 2ifu_A           90 QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV  144 (307)
T ss_dssp             TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence            66677777777665542    1    2346667777766 7777777777777653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.26  E-value=2.5e-10  Score=110.59  Aligned_cols=178  Identities=11%  Similarity=-0.016  Sum_probs=109.3

Q ss_pred             CHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--
Q 005877          241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--  313 (672)
Q Consensus       241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--  313 (672)
                      .+.+++.+|..++     ..+++++|+..|+++++.  .+   +.+++.+|.+|..    .+++++|+..|+++++..  
T Consensus         3 ~~~~~~~~a~~~~-----~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~P~   73 (225)
T 2yhc_A            3 PPNEIYATAQQKL-----QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPT   73 (225)
T ss_dssp             CHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcC
Confidence            4556666666653     246777777777777652  22   3567777777776    677777777777776542  


Q ss_pred             CH---HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CH
Q 005877          314 LY---SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQ  388 (672)
Q Consensus       314 ~~---~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~  388 (672)
                      ++   .+++.+|.++..     .+..              ....+..++..+..    .+++++|+..|+++++..  ++
T Consensus        74 ~~~~~~a~~~~g~~~~~-----~~~~--------------~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           74 HPNIDYVMYMRGLTNMA-----LDDS--------------ALQGFFGVDRSDRD----PQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             CTTHHHHHHHHHHHHHH-----HHC----------------------------C----CHHHHHHHHHHHHHHTTCTTCT
T ss_pred             CCcHHHHHHHHHHHHHh-----hhhh--------------hhhhhhccchhhcC----cHHHHHHHHHHHHHHHHCcCCh
Confidence            22   366667766653     0000              00001111222222    345555555555554421  11


Q ss_pred             -----------------HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh-----hHHHHHHHHHHhcCCHHHHHHH
Q 005877          389 -----------------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW-----SSLSRWALESYLKGDVGKAFLL  446 (672)
Q Consensus       389 -----------------~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-----~a~~~lg~~~~~~g~~~~A~~~  446 (672)
                                       ...+.+|.+|..    .+++++|+..|+++++..|.     .+++.+|.++...|++++|+..
T Consensus       131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~  206 (225)
T 2yhc_A          131 YTTDATKRLVFLKDRLAKYEYSVAEYYTE----RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV  206 (225)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence                             122577888887    89999999999999988743     4688999999999999999999


Q ss_pred             HHHHHHcC
Q 005877          447 YSRMAELG  454 (672)
Q Consensus       447 ~~~a~~~g  454 (672)
                      ++++...+
T Consensus       207 ~~~l~~~~  214 (225)
T 2yhc_A          207 AKIIAANS  214 (225)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhhC
Confidence            99876653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.21  E-value=1.4e-10  Score=101.20  Aligned_cols=112  Identities=11%  Similarity=-0.051  Sum_probs=83.2

Q ss_pred             CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccC
Q 005877          121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK  198 (672)
Q Consensus       121 ~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~  198 (672)
                      |..+.++..+|..|..    .+++++|+.+|+++++  +.++.+++.+|.+|...|++++|+..|+++++.         
T Consensus        10 P~~a~~~~~~G~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------   76 (126)
T 4gco_A           10 PELAQEEKNKGNEYFK----KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---------   76 (126)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---------
Confidence            4455677778888877    7788888888888765  677888888888888888888888888877663         


Q ss_pred             CCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--c
Q 005877          199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--K  276 (672)
Q Consensus       199 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~  276 (672)
                                                             ++.++.+++.+|.+|...     +++++|++.|+++++  +
T Consensus        77 ---------------------------------------~p~~~~a~~~lg~~~~~~-----~~~~~A~~~~~~al~l~P  112 (126)
T 4gco_A           77 ---------------------------------------DSKFIKGYIRKAACLVAM-----REWSKAQRAYEDALQVDP  112 (126)
T ss_dssp             ---------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCT
T ss_pred             ---------------------------------------hhhhhHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCc
Confidence                                                   345677778888887777     478888888888766  4


Q ss_pred             CCHHHHHHHHHHH
Q 005877          277 GEPQSMEFLGEIY  289 (672)
Q Consensus       277 ~~~~a~~~Lg~~y  289 (672)
                      +++.+...|+.++
T Consensus       113 ~~~~a~~~l~~~l  125 (126)
T 4gco_A          113 SNEEAREGVRNCL  125 (126)
T ss_dssp             TCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhc
Confidence            6777777776653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.21  E-value=5e-11  Score=110.69  Aligned_cols=59  Identities=14%  Similarity=-0.003  Sum_probs=34.1

Q ss_pred             HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005877          125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELA  187 (672)
Q Consensus       125 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~  187 (672)
                      +..+.+|..+..    .+++++|+.+|++++.  ++++.+++.+|.++...|++++|+..|++++
T Consensus         7 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~   67 (176)
T 2r5s_A            7 EQLLKQVSELLQ----QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP   67 (176)
T ss_dssp             TTHHHHHHHHHH----TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence            344555555555    5566666666665443  4566666666666666666666666665543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.21  E-value=2e-10  Score=127.83  Aligned_cols=153  Identities=15%  Similarity=0.039  Sum_probs=76.2

Q ss_pred             hcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHH
Q 005877          370 RDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFL  445 (672)
Q Consensus       370 ~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~  445 (672)
                      +++++|+.+|+++++  +++..+++.+|.++..    .+++++|+.+|+++++..+  +.++..+|.++...|++++|+.
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELG----MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            456666666666654  2345666666666655    5666666666666665543  3455556666666666666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHH
Q 005877          446 LYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYE  525 (672)
Q Consensus       446 ~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~  525 (672)
                      +|+++++.                                              .++++.+++++|.+|.    ..++++
T Consensus        79 ~~~~al~~----------------------------------------------~p~~~~~~~~la~~~~----~~g~~~  108 (568)
T 2vsy_A           79 LLQQASDA----------------------------------------------APEHPGIALWLGHALE----DAGQAE  108 (568)
T ss_dssp             HHHHHHHH----------------------------------------------CTTCHHHHHHHHHHHH----HTTCHH
T ss_pred             HHHHHHhc----------------------------------------------CCCCHHHHHHHHHHHH----HcCCHH
Confidence            66655443                                              2334455555555555    555666


Q ss_pred             HHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          526 RAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       526 ~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      +|+++|+++++  .+++.++++||.++.. .+..+++++|.++|+++++.+|..
T Consensus       109 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          109 AAAAAYTRAHQLLPEEPYITAQLLNWRRR-LCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhccccHHHHHHHHHHHHhcCCcc
Confidence            66666666544  2455555666655554 000155666666666666555543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.20  E-value=3.2e-09  Score=107.09  Aligned_cols=220  Identities=8%  Similarity=-0.072  Sum_probs=174.8

Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchh--cHHHHHHHHHHHHHc--CCHHHHHHHHHHH----HcCCCc
Q 005877          335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR--DVKLACKYFLVAANA--GHQKAFYQLAKMF----HTGVGL  404 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~A~~~--~~~~a~~~L~~~y----~~g~g~  404 (672)
                      ..++|+..+.+++..  ++..+++.-|.+...    .+  ++++++.++.+++..  .+..++++-+.++    ... +.
T Consensus        48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~----l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l-~~  122 (306)
T 3dra_A           48 YSERALHITELGINELASHYTIWIYRFNILKN----LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN-NN  122 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----CTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT-TT
T ss_pred             CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH----cccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc-cc
Confidence            446888999888876  478888989988887    55  899999999998874  4678888888887    431 11


Q ss_pred             cCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHH--HHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCC
Q 005877          405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVG--KAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGE  478 (672)
Q Consensus       405 ~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~--~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~  478 (672)
                      .+++++++.++.++++..|  ..++...+.+....|.++  +++.++.++++.+  +..|+++.++++...+.       
T Consensus       123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~-------  195 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH-------  195 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG-------
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc-------
Confidence            2688999999999999884  567888888888889888  9999999997764  89999999999876321       


Q ss_pred             CCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 005877          479 SGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-----SNAQAMFNLGYMHE  551 (672)
Q Consensus       479 ~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~a~~~Lg~~y~  551 (672)
                         ..+...++++++++++++  .++|..+++.++.++...   ....+....+.++.++.     .++.++..|+.+|.
T Consensus       196 ---~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~  269 (306)
T 3dra_A          196 ---LATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF---DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT  269 (306)
T ss_dssp             ---GCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT---TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred             ---cchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc---CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence               112345899999999875  567899999999999842   23355566677776653     58999999999998


Q ss_pred             cCCCCCCCHHHHHHHHHHHHh-cCCC
Q 005877          552 HGQGLPLDLHLAKRYYDQALE-VDPA  576 (672)
Q Consensus       552 ~g~g~~~d~~~A~~~~~~A~~-~~~~  576 (672)
                      .    .++.++|++.|+++.+ .+|.
T Consensus       270 ~----~~~~~~A~~~~~~l~~~~Dpi  291 (306)
T 3dra_A          270 Q----QKKYNESRTVYDLLKSKYNPI  291 (306)
T ss_dssp             H----TTCHHHHHHHHHHHHHTTCGG
T ss_pred             c----cCCHHHHHHHHHHHHhccChH
Confidence            6    7899999999999997 6887

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.19  E-value=3e-10  Score=99.07  Aligned_cols=107  Identities=17%  Similarity=0.058  Sum_probs=79.8

Q ss_pred             CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhH
Q 005877          351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS  426 (672)
Q Consensus       351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a  426 (672)
                      .+.++.++|..|..    .|++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+..|+++++.+|  +.+
T Consensus        12 ~a~~~~~~G~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A           12 LAQEEKNKGNEYFK----KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK----LMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh----hccHHHHHHHHHHHHHhhhhhhHH
Confidence            34566677777777    77888888888887663  467777788888776    7788888888888877763  556


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI  465 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~  465 (672)
                      ++.+|.++...|++++|+..|+++++.  ++..++.+++.+
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            778888888888888888888888554  577777777655

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.19  E-value=2.8e-10  Score=105.57  Aligned_cols=161  Identities=8%  Similarity=-0.076  Sum_probs=121.9

Q ss_pred             CCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCC-C
Q 005877           83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG-N  159 (672)
Q Consensus        83 ~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~  159 (672)
                      ...+..+.+|..++.       .|++++|+..|++  ..+|+++.+++.+|.+|..    .+++++|+.++++++... +
T Consensus         4 ~~~~~~~~~a~~~~~-------~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~   72 (176)
T 2r5s_A            4 SPDEQLLKQVSELLQ-------QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLE----TKQFELAQELLATIPLEYQD   72 (176)
T ss_dssp             --CTTHHHHHHHHHH-------TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH----TTCHHHHHHHHTTCCGGGCC
T ss_pred             CHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHhhhccCC
Confidence            345667888888775       5899999999999  6788999999999999998    999999999999987632 5


Q ss_pred             HHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH
Q 005877          160 IQSKMAVAYTYLR-QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ  238 (672)
Q Consensus       160 ~~a~~~Lg~~y~~-~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~  238 (672)
                      +.....++.+... .++..+|+..|+++++                                                .+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~------------------------------------------------~~  104 (176)
T 2r5s_A           73 NSYKSLIAKLELHQQAAESPELKRLEQELA------------------------------------------------AN  104 (176)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHH------------------------------------------------HS
T ss_pred             hHHHHHHHHHHHHhhcccchHHHHHHHHHH------------------------------------------------hC
Confidence            6555544444321 1122234444444433                                                34


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877          239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR  311 (672)
Q Consensus       239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  311 (672)
                      ++++.+++.+|.++...     +++++|+..|+++++..    ++.++..+|.++..    .++.++|+..|++++.
T Consensus       105 P~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          105 PDNFELACELAVQYNQV-----GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA----LGQGNAIASKYRRQLY  172 (176)
T ss_dssp             TTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH----HCSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH----hCCCCcHHHHHHHHHH
Confidence            56889999999999888     49999999999998753    35688999999988    8888999999988764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.18  E-value=3.9e-10  Score=114.00  Aligned_cols=62  Identities=16%  Similarity=0.032  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHcCCCCCCCHHHH-HHHHHHHHhcC
Q 005877          505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS--------NAQAMFNLGYMHEHGQGLPLDLHLA-KRYYDQALEVD  574 (672)
Q Consensus       505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~--------~~~a~~~Lg~~y~~g~g~~~d~~~A-~~~~~~A~~~~  574 (672)
                      .+++++|.+|.    ..+++++|+.++++|++..        -+.+++++|.+|..    .|++++| ..+|++|+++.
T Consensus       197 ~~~~nlg~~y~----~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          197 KVRYNHAKALY----LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK----LEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHH----HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHH
Confidence            57889999999    8999999999999997641        17889999999988    8999999 88999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.17  E-value=2.4e-10  Score=115.24  Aligned_cols=163  Identities=12%  Similarity=-0.021  Sum_probs=122.5

Q ss_pred             hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhcc
Q 005877          120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS  197 (672)
Q Consensus       120 ~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~  197 (672)
                      .++++++++.+|..+..    .+++++|+..|++++.  ++++.+++.||.++...|++++|+..|++++...+...   
T Consensus       113 lp~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~---  185 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQ----ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR---  185 (287)
T ss_dssp             SCCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH---
T ss_pred             cCCchhhHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH---
Confidence            37888999999999998    9999999999999875  79999999999999999999999999998865432110   


Q ss_pred             CCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 005877          198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD  275 (672)
Q Consensus       198 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~  275 (672)
                                   ......+..+...++.++|+..+++++.  ++++.+++.||.+|...     +++++|+..|+++++
T Consensus       186 -------------~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~-----g~~~~A~~~l~~~l~  247 (287)
T 3qou_A          186 -------------YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV-----GRNEEALELLFGHLR  247 (287)
T ss_dssp             -------------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHH
T ss_pred             -------------HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHh
Confidence                         0111234445566667777777777643  35777777777777776     377777777777776


Q ss_pred             c--CC--HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 005877          276 K--GE--PQSMEFLGEIYARGAGVERNYTKALEWLTHAAR  311 (672)
Q Consensus       276 ~--~~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  311 (672)
                      .  ++  +.++..||.++..    .++.++|+..|++++.
T Consensus       248 ~~p~~~~~~a~~~l~~~~~~----~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          248 XDLTAADGQTRXTFQEILAA----LGTGDALASXYRRQLY  283 (287)
T ss_dssp             HCTTGGGGHHHHHHHHHHHH----HCTTCHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHH----cCCCCcHHHHHHHHHH
Confidence            3  33  6677777777777    7777777777777654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.17  E-value=4.7e-10  Score=124.77  Aligned_cols=147  Identities=14%  Similarity=-0.001  Sum_probs=103.5

Q ss_pred             hhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHH
Q 005877          106 RVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVK  181 (672)
Q Consensus       106 ~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~  181 (672)
                      +++++|+..|+++  .+++++.+++.+|.+|..    .+++++|+.+|+++++  ++++.+++.+|.+|...|++++|+.
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELG----MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            6778888888884  456788899999999988    8899999999999887  5788899999999999999999999


Q ss_pred             HHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 005877          182 LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRR  261 (672)
Q Consensus       182 ~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~  261 (672)
                      +|+++++.                                                +++++.+++.+|.+|...     +
T Consensus        79 ~~~~al~~------------------------------------------------~p~~~~~~~~la~~~~~~-----g  105 (568)
T 2vsy_A           79 LLQQASDA------------------------------------------------APEHPGIALWLGHALEDA-----G  105 (568)
T ss_dssp             HHHHHHHH------------------------------------------------CTTCHHHHHHHHHHHHHT-----T
T ss_pred             HHHHHHhc------------------------------------------------CCCCHHHHHHHHHHHHHc-----C
Confidence            99888763                                                234667777777777776     3


Q ss_pred             CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc---CCHHHHHHHHHHHHHcC
Q 005877          262 DRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVE---RNYTKALEWLTHAARQQ  313 (672)
Q Consensus       262 ~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~---~~~~~A~~~~~~a~~~~  313 (672)
                      ++++|+++|+++++  ++++.++..+|.++..    .   +++++|+..|+++++.+
T Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          106 QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR----LCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCTTHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhccccHHHHHHHHHHHHhcC
Confidence            77777777777766  3567777777777777    6   77777777777777653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.17  E-value=7e-10  Score=112.14  Aligned_cols=157  Identities=10%  Similarity=-0.022  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--
Q 005877          280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--  349 (672)
Q Consensus       280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~------~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--  349 (672)
                      ......+..+..    .+++++|+.+++++++..  .      ...++.+|.+|..     .+++++|+.+|+++++.  
T Consensus        76 ~~l~~~~~~~~~----~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~~  146 (293)
T 2qfc_A           76 KQFKDQVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-----KVDYEYCILELKKLLNQQL  146 (293)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHH----hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHh
Confidence            344556677777    899999999999988753  1      2345678888774     56999999999999864  


Q ss_pred             --C----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH---c--CC----HHHHHHHHHHHHcCCCccCCHHHHHHH
Q 005877          350 --E----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN---A--GH----QKAFYQLAKMFHTGVGLKKNLHMATAL  414 (672)
Q Consensus       350 --~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~---~--~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~  414 (672)
                        .    ...+++++|.+|..    .+++++|+.+|++|++   .  ++    ..+++++|.+|..    .+++++|+.+
T Consensus       147 ~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~  218 (293)
T 2qfc_A          147 TGIDVYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQ  218 (293)
T ss_dssp             CSSCTTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHH
Confidence              1    15688999999999    9999999999999984   2  22    2688999999998    9999999999


Q ss_pred             HHHHHHcCC--------hhHHHHHHHHHHhcCCHHHH-HHHHHHHHHc
Q 005877          415 YKLVAERGP--------WSSLSRWALESYLKGDVGKA-FLLYSRMAEL  453 (672)
Q Consensus       415 ~~~a~~~~~--------~~a~~~lg~~~~~~g~~~~A-~~~~~~a~~~  453 (672)
                      |+++++..+        ..+++++|.++...|++++| ..+|++|+..
T Consensus       219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            999987642        45789999999999999999 7889998653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.15  E-value=8.5e-10  Score=105.30  Aligned_cols=128  Identities=16%  Similarity=0.127  Sum_probs=94.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCH
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNE  504 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~  504 (672)
                      ++.+|..++..|++++|+..|+++++. ++.++.++|.++..                .+++++|+.+++++++  +.++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~----------------~g~~~~A~~~~~~al~~~~~~~   71 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTI----------------LKNMTEAEKAFTRSINRDKHLA   71 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCccch
Confidence            445555666666666666666666533 55566666666655                5566666666665543  5567


Q ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC----------------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 005877          505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN----------------AQAMFNLGYMHEHGQGLPLDLHLAKRY  566 (672)
Q Consensus       505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~----------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~  566 (672)
                      .+++++|.+|.    ..+++++|+.+|+++++.  ++                +.+++++|.+|..    .|++++|+++
T Consensus        72 ~~~~~lg~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~  143 (213)
T 1hh8_A           72 VAYFQRGMLYY----QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQ  143 (213)
T ss_dssp             HHHHHHHHHHH----HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred             HHHHHHHHHHH----HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----ccCHHHHHHH
Confidence            88889999999    789999999999999873  33                3899999999987    8899999999


Q ss_pred             HHHHHhcCCCCcc
Q 005877          567 YDQALEVDPAAKL  579 (672)
Q Consensus       567 ~~~A~~~~~~~~~  579 (672)
                      |+++++.+|+...
T Consensus       144 ~~~al~~~p~~~~  156 (213)
T 1hh8_A          144 LALATSMKSEPRH  156 (213)
T ss_dssp             HHHHHTTCCSGGG
T ss_pred             HHHHHHcCccccc
Confidence            9999999987644

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.14  E-value=1.6e-10  Score=104.06  Aligned_cols=71  Identities=15%  Similarity=0.210  Sum_probs=63.0

Q ss_pred             hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          500 EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       500 ~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      +|.++.+++++|.+|.    ..+++++|+.+|++|++  ++++.++++||.+|..    .|++++|+.+|++|+++.|+.
T Consensus        66 ~P~~~~~~~~lg~~~~----~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~----lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A           66 DFYNVDYIMGLAAIYQ----IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR----LKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             CTTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCH
T ss_pred             CCCCHHHHHHHHHHHH----HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCH
Confidence            4667888889999999    88999999999999976  5789999999999988    899999999999999999885


Q ss_pred             c
Q 005877          578 K  578 (672)
Q Consensus       578 ~  578 (672)
                      .
T Consensus       138 ~  138 (151)
T 3gyz_A          138 K  138 (151)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.14  E-value=1.1e-09  Score=110.40  Aligned_cols=160  Identities=13%  Similarity=-0.066  Sum_probs=103.6

Q ss_pred             cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--C
Q 005877          276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E  351 (672)
Q Consensus       276 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~  351 (672)
                      ++++.+++.+|..+..    .+++++|+..|+++++.  +++.++..||.++..     .|++++|+.+|+++.+.+  .
T Consensus       114 p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-----~g~~~~A~~~l~~~~~~~p~~  184 (287)
T 3qou_A          114 PREEELXAQQAMQLMQ----ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-----LNRSEDAEAVLXTIPLQDQDT  184 (287)
T ss_dssp             CCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-----TTCHHHHHHHHTTSCGGGCSH
T ss_pred             CCchhhHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-----CCCHHHHHHHHHhCchhhcch
Confidence            4555666666666666    67777777777776643  466677777777664     457777777777665542  2


Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC----hh
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----WS  425 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~  425 (672)
                      .......+..+..    .++.++|+..|+++++  ++++.+++++|.++..    .+++++|+..|+++++..|    ..
T Consensus       185 ~~~~~~~~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l~~~l~~~p~~~~~~  256 (287)
T 3qou_A          185 RYQGLVAQIELLX----QAADTPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELLFGHLRXDLTAADGQ  256 (287)
T ss_dssp             HHHHHHHHHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred             HHHHHHHHHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcccccccch
Confidence            3334444444555    5566667777777665  3466777777777776    6777777777777776653    33


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877          426 SLSRWALESYLKGDVGKAFLLYSRMAE  452 (672)
Q Consensus       426 a~~~lg~~~~~~g~~~~A~~~~~~a~~  452 (672)
                      +...++.++...|+.++|...|++++.
T Consensus       257 a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          257 TRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            566777777777777777777777653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.14  E-value=2.8e-09  Score=92.55  Aligned_cols=127  Identities=31%  Similarity=0.354  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--C
Q 005877          426 SLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--Q  501 (672)
Q Consensus       426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~  501 (672)
                      +++.+|..+...|++++|+.+++++++.  .+..++.+++.++..                .+++++|+.+++++..  +
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----------------~~~~~~A~~~~~~~~~~~~   66 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----------------QGDYDEAIEYYQKALELDP   66 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------HTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----------------hcCHHHHHHHHHHHHHHCC
Confidence            3445555555555555555555555443  245555555555554                4556666666665433  4


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          502 GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       502 ~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      .++.+++.+|.++.    ..+++++|+.+++++++.  .++.+++.+|.+|..    .+++++|..+++++++.+|+
T Consensus        67 ~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           67 RSAEAWYNLGNAYY----KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TCHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHSTT
T ss_pred             CchHHHHHHHHHHH----HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----HccHHHHHHHHHHHHccCCC
Confidence            55778889999999    889999999999998764  678899999999987    88999999999999998875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.12  E-value=2.9e-09  Score=107.55  Aligned_cols=162  Identities=14%  Similarity=0.053  Sum_probs=110.1

Q ss_pred             HHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHH------HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----C-
Q 005877          357 NLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQK------AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P-  423 (672)
Q Consensus       357 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~------a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~-  423 (672)
                      .....+..    .+++++|...++++.+..  .+.      .+..+|.++..    .+++++|+.+|+++++..    + 
T Consensus        80 ~~i~~~~~----~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~Ai~~~~~al~~~~~~~~~  151 (293)
T 3u3w_A           80 DQVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK----KVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHH----TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT----SSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred             HHHHHHHH----HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHHhcccccH
Confidence            34555666    777777777777776632  121      22236666654    567777777777777632    1 


Q ss_pred             ---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh
Q 005877          424 ---WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE  500 (672)
Q Consensus       424 ---~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  500 (672)
                         ..++.++|.+|...|++++|+.+|+++++.-            ...            +   .            ..
T Consensus       152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~------------~~~------------~---~------------~~  192 (293)
T 3u3w_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL------------EAL------------H---D------------NE  192 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHS------------S---C------------CH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------Hhc------------c---c------------ch
Confidence               1246667777777777777777777666521            000            0   0            00


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHH
Q 005877          501 QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----S----NAQAMFNLGYMHEHGQGLPL-DLHLAKRYYDQAL  571 (672)
Q Consensus       501 ~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~----~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~  571 (672)
                      +....+++++|.+|.    ..+++++|+.++++|++.    +    -+.+++++|.+|..    .| ++++|+++|++|+
T Consensus       193 ~~~~~~~~nlg~~y~----~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          193 EFDVKVRYNHAKALY----LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK----LEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH----hCCcHHHHHHHHHHHH
Confidence            112457789999999    899999999999999763    1    27899999999987    67 5799999999998


Q ss_pred             hc
Q 005877          572 EV  573 (672)
Q Consensus       572 ~~  573 (672)
                      ++
T Consensus       265 ~i  266 (293)
T 3u3w_A          265 FF  266 (293)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.12  E-value=3.2e-10  Score=111.83  Aligned_cols=179  Identities=11%  Similarity=-0.027  Sum_probs=130.9

Q ss_pred             hhcHHHHHHHHHHHHHcC--CHHHHHHH-------HHHHHcCCCccCCHHHHHHHHHHHHHcCC----------------
Q 005877          369 KRDVKLACKYFLVAANAG--HQKAFYQL-------AKMFHTGVGLKKNLHMATALYKLVAERGP----------------  423 (672)
Q Consensus       369 ~~~~~~A~~~~~~A~~~~--~~~a~~~L-------~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----------------  423 (672)
                      .+|+..|...|.++++..  ..+++..+       +.++..    .....+++..++++++..+                
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~----~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFR----AWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHH----HHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred             CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHH----HHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence            456666666666665533  34444444       333333    3334555555555555321                


Q ss_pred             -------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHH
Q 005877          424 -------WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL  494 (672)
Q Consensus       424 -------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~  494 (672)
                             ......++..+...|++++|...|......+  +. +++.+|.++.+                .+++++|+.+
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----------------~~r~~dA~~~  157 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA----------------AERWTDVIDQ  157 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----------------TTCHHHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----------------cCCHHHHHHH
Confidence                   1233456677888899999999998876544  34 78888888877                7789999999


Q ss_pred             HHHHHhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 005877          495 WWQASEQGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS-----NAQAMFNLGYMHEHGQGLPLDLHLAKR  565 (672)
Q Consensus       495 ~~~a~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~  565 (672)
                      ++.+....+    .++.++||.++.    ..+++++|+.+|+++....     .+.+++++|.++..    .|+.++|..
T Consensus       158 l~~a~~~~d~~~~~~a~~~LG~al~----~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~----lGr~deA~~  229 (282)
T 4f3v_A          158 VKSAGKWPDKFLAGAAGVAHGVAAA----NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS----QGNESAAVA  229 (282)
T ss_dssp             HTTGGGCSCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred             HHHhhccCCcccHHHHHHHHHHHHH----HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH----cCCHHHHHH
Confidence            987766543    358899999999    8999999999999998654     45799999999988    899999999


Q ss_pred             HHHHHHhcCCC
Q 005877          566 YYDQALEVDPA  576 (672)
Q Consensus       566 ~~~~A~~~~~~  576 (672)
                      .|+++...+|+
T Consensus       230 ~l~~a~a~~P~  240 (282)
T 4f3v_A          230 LLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHhcCCc
Confidence            99999999998

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.10  E-value=3e-09  Score=107.43  Aligned_cols=151  Identities=9%  Similarity=-0.015  Sum_probs=122.1

Q ss_pred             HHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHH------HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC--
Q 005877          286 GEIYARGAGVERNYTKALEWLTHAARQQ--LYS------AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE--  351 (672)
Q Consensus       286 g~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~------a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~--  351 (672)
                      ...+..    .+++++|+..++++.+..  .+.      .+..+|.+|..     .+++++|+.+|+++++.    ++  
T Consensus        82 i~~~~~----~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~Ai~~~~~al~~~~~~~~~~  152 (293)
T 3u3w_A           82 VIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-----KVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHH----TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-----SSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred             HHHHHH----HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-----ccCHHHHHHHHHHHHHHhcccccHH
Confidence            445555    789999999999998743  222      33457888764     56999999999999874    22  


Q ss_pred             --HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH----c-C----CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHH
Q 005877          352 --AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN----A-G----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE  420 (672)
Q Consensus       352 --~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~----~-~----~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~  420 (672)
                        ..++.++|.+|..    .+++++|+.+|+++++    . +    ...+++++|.+|..    .+++++|+.+++++++
T Consensus       153 ~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          153 QNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHH
Confidence              4478999999999    9999999999999985    1 2    24588999999998    9999999999999987


Q ss_pred             cCC--------hhHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 005877          421 RGP--------WSSLSRWALESYLKG-DVGKAFLLYSRMAEL  453 (672)
Q Consensus       421 ~~~--------~~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~  453 (672)
                      ..+        ..+++++|.++...| ++++|+.+|++|++.
T Consensus       225 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            541        457899999999999 579999999999764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.09  E-value=2.1e-09  Score=102.49  Aligned_cols=126  Identities=19%  Similarity=0.141  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHH
Q 005877          316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQ  393 (672)
Q Consensus       316 ~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~  393 (672)
                      ..++.+|..+..     .+++++|+.+|+++++. ++.+++++|.+|..    .+++++|+.+|+++++.  .++.++++
T Consensus         7 ~~~~~~g~~~~~-----~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~   76 (213)
T 1hh8_A            7 ISLWNEGVLAAD-----KKDWKGALDAFSAVQDP-HSRICFNIGCMYTI----LKNMTEAEKAFTRSINRDKHLAVAYFQ   76 (213)
T ss_dssp             HHHHHHHHHHHH-----TTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHH-----hCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHH
Confidence            345667777764     45778888888777633 67777888888877    77888888888887763  46777888


Q ss_pred             HHHHHHcCCCccCCHHHHHHHHHHHHHcCCh------------------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005877          394 LAKMFHTGVGLKKNLHMATALYKLVAERGPW------------------SSLSRWALESYLKGDVGKAFLLYSRMAELGY  455 (672)
Q Consensus       394 L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------------------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~  455 (672)
                      +|.+|..    .+++++|+.+|+++++..+.                  .+++++|.++...|++++|+.+|+++++...
T Consensus        77 lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           77 RGMLYYQ----TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHH----cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence            8888877    78888888888888775432                  6788999999999999999999999987753

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.06  E-value=1.5e-09  Score=97.77  Aligned_cols=97  Identities=14%  Similarity=0.137  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhH
Q 005877          351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS  426 (672)
Q Consensus       351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a  426 (672)
                      ++.+++.+|.++..    .+++++|+.+|+++++  +.++.+++++|.+|..    .+++++|+..|+++++..|  +.+
T Consensus        35 ~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~Ai~~~~~al~l~P~~~~~  106 (151)
T 3gyz_A           35 MMDDIYSYAYDFYN----KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI----KEQFQQAADLYAVAFALGKNDYTP  106 (151)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhCCCCcHH
Confidence            56677777777777    7777777777777766  3467777777777776    7777788888877777663  567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAELGY  455 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~  455 (672)
                      ++++|.++...|++++|+..|+++++...
T Consensus       107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          107 VFHTGQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            77777777778888888888888777653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.05  E-value=5.8e-10  Score=109.99  Aligned_cols=196  Identities=8%  Similarity=0.020  Sum_probs=116.1

Q ss_pred             cCCHHHHHHHHHHHHh--CCCHHHHHHH-------HHHHhccCCHHHHHHHHHHHHHHHHhhhhccCC-CCcc--cchhc
Q 005877          141 ERNKGKAFLYHHFAAE--GGNIQSKMAV-------AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD-SPVI--EPIRI  208 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~--~~~~~a~~~L-------g~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~-~~~~--~~~~l  208 (672)
                      .+|...|..+|.++++  ++..++++.+       +.++.......+++..+++.+.+.+..+...-. .+..  -.+++
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v   98 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV   98 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred             CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence            7899999999999876  7899999999       788888888888999999888766554322111 1110  00000


Q ss_pred             ccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 005877          209 HNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLG  286 (672)
Q Consensus       209 ~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  286 (672)
                      .                              .-.+..+.++.++...     +++++|.+.|+..+..  ++. +.+.+|
T Consensus        99 ~------------------------------~r~dl~LayA~~L~~~-----g~y~eA~~~l~~~~~~~p~~~-~~~~~a  142 (282)
T 4f3v_A           99 T------------------------------SPLAITMGFAACEAAQ-----GNYADAMEALEAAPVAGSEHL-VAWMKA  142 (282)
T ss_dssp             S------------------------------SHHHHHHHHHHHHHHH-----TCHHHHHHHHTSSCCTTCHHH-HHHHHH
T ss_pred             C------------------------------CHhHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCCchH-HHHHHH
Confidence            0                              0123344445555444     2555555555554432  223 555555


Q ss_pred             HHHHcCCCCcCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHH
Q 005877          287 EIYARGAGVERNYTKALEWLTHAARQQLY----SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGHYN  357 (672)
Q Consensus       287 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~-----~~~a~~~  357 (672)
                      .++..    .+++++|+.+|+++....++    .+.+.||.++..     .|++++|+.+|++++...     .++++++
T Consensus       143 ~l~~~----~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-----LG~~~eAl~~l~~a~~g~~~P~~~~da~~~  213 (282)
T 4f3v_A          143 VVYGA----AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-----LALFTEAERRLTEANDSPAGEACARAIAWY  213 (282)
T ss_dssp             HHHHH----TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTSTTTTTTHHHHHHH
T ss_pred             HHHHH----cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence            55555    56666666666555443322    355666666654     446666666666665433     2346666


Q ss_pred             HHHHHHcCCCchhcHHHHHHHHHHHHHc
Q 005877          358 LGVMYYKGIGVKRDVKLACKYFLVAANA  385 (672)
Q Consensus       358 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  385 (672)
                      +|.++..    .|+.++|...|+++...
T Consensus       214 ~glaL~~----lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          214 LAMARRS----QGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----cCCHHHHHHHHHHHHhc
Confidence            6666666    66666666666666543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.03  E-value=2.1e-09  Score=93.75  Aligned_cols=98  Identities=19%  Similarity=0.258  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHH
Q 005877          426 SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEH  505 (672)
Q Consensus       426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  505 (672)
                      ++.++|..++..|++++|+.+|++|++.                                              .|.++.
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~----------------------------------------------~p~~~~   43 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL----------------------------------------------DPSNIT   43 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------------------CTTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------------CCCCHH
Confidence            4556777777777777777777777653                                              355677


Q ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          506 AALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN-------AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       506 a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~-------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      +++++|.+|.    ..+++++|+.++++|++.  .+       +.+++++|.+|..    .+++++|+++|++|++..|+
T Consensus        44 ~~~nlg~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           44 FYNNKAAVYF----EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK----QNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHhHHHHHH----HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcC
Confidence            7888888888    789999999999998764  11       4688899999887    88999999999999988876


Q ss_pred             C
Q 005877          577 A  577 (672)
Q Consensus       577 ~  577 (672)
                      .
T Consensus       116 ~  116 (127)
T 4gcn_A          116 P  116 (127)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.03  E-value=7.2e-10  Score=99.65  Aligned_cols=111  Identities=15%  Similarity=0.142  Sum_probs=85.2

Q ss_pred             HHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHH
Q 005877          413 ALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQC  490 (672)
Q Consensus       413 ~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~  490 (672)
                      ..|+++++..|  ..+++.+|..++..|++++|+..|+++++.                                     
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------------------------   50 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-------------------------------------   50 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------------------------------------
Confidence            34555555543  334556666666666666666666655442                                     


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 005877          491 AHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYD  568 (672)
Q Consensus       491 A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  568 (672)
                               .+.++.+++++|.+|.    ..+++++|+.+|+++++  ++++.+++++|.+|..    .|++++|+.+|+
T Consensus        51 ---------~p~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~  113 (148)
T 2vgx_A           51 ---------DHYDSRFFLGLGACRQ----AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ----XGELAEAESGLF  113 (148)
T ss_dssp             ---------CTTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred             ---------CcccHHHHHHHHHHHH----HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH----cCCHHHHHHHHH
Confidence                     4567788889999999    88999999999999976  4789999999999987    899999999999


Q ss_pred             HHHhcCCCC
Q 005877          569 QALEVDPAA  577 (672)
Q Consensus       569 ~A~~~~~~~  577 (672)
                      ++++++|+.
T Consensus       114 ~al~~~p~~  122 (148)
T 2vgx_A          114 LAQELIANX  122 (148)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHCcCC
Confidence            999998764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.03  E-value=1.2e-08  Score=88.42  Aligned_cols=110  Identities=28%  Similarity=0.457  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHH
Q 005877          335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM  410 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~  410 (672)
                      ++++|+.+|+++++.  +++.+++.+|.++..    .+++++|+.+|+++.+.  .++.+++.+|.++..    .+++++
T Consensus        16 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~   87 (136)
T 2fo7_A           16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDE   87 (136)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHH
T ss_pred             cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH----hcCHHH
Confidence            444444444444332  234444444444444    44444444444444432  233444444444443    444555


Q ss_pred             HHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877          411 ATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE  452 (672)
Q Consensus       411 A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~  452 (672)
                      |+.+++++++..+  +.++..+|.++...|++++|+.+++++++
T Consensus        88 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            5555544444432  23344445555555555555555555543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.01  E-value=6.4e-08  Score=97.51  Aligned_cols=231  Identities=9%  Similarity=0.006  Sum_probs=174.9

Q ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHH
Q 005877          261 RDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTK  338 (672)
Q Consensus       261 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~  338 (672)
                      .++.++..+++...+.+                   ...++|+..+.++++.  .+..+.+.-|.+......   .++++
T Consensus        30 ~~y~~~~~~~~a~~~~~-------------------e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~---~~~~e   87 (306)
T 3dra_A           30 EDYKQIMGLLLALMKAE-------------------EYSERALHITELGINELASHYTIWIYRFNILKNLPN---RNLYD   87 (306)
T ss_dssp             HHHHHHHHHHHHHHHTT-------------------CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT---SCHHH
T ss_pred             HHHHHHHHHHHHHHHcC-------------------CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc---ccHHH
Confidence            36677777777655543                   3346788888888875  478888888888875100   28899


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHH----HcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHH-
Q 005877          339 AKEYFEKAADN--EEAGGHYNLGVMY----YKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLH-  409 (672)
Q Consensus       339 A~~~~~~a~~~--~~~~a~~~Lg~~y----~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~-  409 (672)
                      ++.++.+++..  .+..++++-+.+.    ... +..+++++++.++.++++.  .+..++++-+.+...    .+.++ 
T Consensus        88 eL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l-~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~----l~~~~~  162 (306)
T 3dra_A           88 ELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN-NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT----FDLHND  162 (306)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT-TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTC
T ss_pred             HHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc-cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcccCh
Confidence            99999998876  4788888888887    441 1126788999999999874  478889888888876    56666 


Q ss_pred             -HHHHHHHHHHHcC--ChhHHHHHHHHHHhcCC------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCC
Q 005877          410 -MATALYKLVAERG--PWSSLSRWALESYLKGD------VGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGE  478 (672)
Q Consensus       410 -~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~------~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~  478 (672)
                       +++++++++++.+  +..++...+.+....+.      +++++.++.+++..  ++..++++++.++.+.+..      
T Consensus       163 ~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~------  236 (306)
T 3dra_A          163 AKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRS------  236 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCC------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCC------
Confidence             9999999999887  45678888888888776      89999999999655  6999999999999884321      


Q ss_pred             CCCCCchHhHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 005877          479 SGFCTDAERHQCAHSLWWQASE-----QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ  537 (672)
Q Consensus       479 ~~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~  537 (672)
                               ........++.++     +.++.++..++++|.    ..++.++|+++|+++++.
T Consensus       237 ---------~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~----~~~~~~~A~~~~~~l~~~  287 (306)
T 3dra_A          237 ---------ITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT----QQKKYNESRTVYDLLKSK  287 (306)
T ss_dssp             ---------GGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHT
T ss_pred             ---------hHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhc
Confidence                     2223334444333     457899999999999    789999999999999863

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.01  E-value=7.5e-10  Score=114.31  Aligned_cols=146  Identities=15%  Similarity=0.075  Sum_probs=109.3

Q ss_pred             hhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC---------------HHHHHH
Q 005877          105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN---------------IQSKMA  165 (672)
Q Consensus       105 ~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~---------------~~a~~~  165 (672)
                      ..++++|+..++++  .++.++.+++.+|.+|..    .+++++|+.+|++++.  +.+               ..++++
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n  201 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN  201 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHH
Confidence            35566777777763  345677888888888888    8888888888888876  445               477777


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHH
Q 005877          166 VAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAM  245 (672)
Q Consensus       166 Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~  245 (672)
                      +|.+|...+++++|+.+|+++++.                                                ++.++.++
T Consensus       202 la~~~~~~g~~~~A~~~~~~al~~------------------------------------------------~p~~~~a~  233 (336)
T 1p5q_A          202 LAMCHLKLQAFSAAIESCNKALEL------------------------------------------------DSNNEKGL  233 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------------CTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh------------------------------------------------CCCcHHHH
Confidence            788887777777777777777653                                                34577888


Q ss_pred             HHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHH-HHHHHHHHH
Q 005877          246 YKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKA-LEWLTHAAR  311 (672)
Q Consensus       246 ~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A-~~~~~~a~~  311 (672)
                      +.+|.+|...     +++++|+.+|+++++  ++++.++..+|.++..    .+++++| ...|++.+.
T Consensus       234 ~~lg~~~~~~-----g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          234 SRRGEAHLAV-----NDFELARADFQKVLQLYPNNKAAKTQLAVCQQR----IRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHT-----TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            8888888877     488888888888876  4678888888888887    7788777 445665543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.99  E-value=3.8e-09  Score=106.05  Aligned_cols=190  Identities=10%  Similarity=-0.067  Sum_probs=124.9

Q ss_pred             CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhH
Q 005877          351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS  426 (672)
Q Consensus       351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a  426 (672)
                      ++.+++.+|..+..    .+++++|+..|+++++  +.++.+++++|.+|..    .+++++|+..|+++++..+  +.+
T Consensus         3 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~   74 (281)
T 2c2l_A            3 SAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSVKA   74 (281)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHH
Confidence            45667777777777    7777777777777766  3467777778877776    7778888888888777663  556


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHH--HhCC
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAELGYEV--AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA--SEQG  502 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~--a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~  502 (672)
                      ++.+|.++...|++++|+..|+++++.+...  ......+..                   -+..++..+....  ..+.
T Consensus        75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~  135 (281)
T 2c2l_A           75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA-------------------LRIAKKKRWNSIEERRIHQ  135 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH-------------------HHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhh
Confidence            7777888888888888888888876553211  100111111                   0122223333322  2334


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      ++.....+|.++.      +++++|++.|++|++.  ++......++.++..   ..+.+++|.+.|+++.+..+.
T Consensus       136 ~~~i~~~l~~l~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~~~~~~~a~~~f~~a~~~~~~  202 (281)
T 2c2l_A          136 ESELHSYLTRLIA------AERERELEECQRNHEGHEDDGHIRAQQACIEAK---HDKYMADMDELFSQVDEKRKK  202 (281)
T ss_dssp             CCHHHHHHHHHHH------HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHH---HHHHHHHHHHHHHHSSCTTSC
T ss_pred             hHHHHHHHHHHHH------HHHHHHHHHHHhhhccccchhhhhhHHHHHHHH---HHHHHHHHHHHHHhhhccccC
Confidence            5666677777764      8999999999999875  455556666666543   135688999999999876443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.97  E-value=9.1e-09  Score=89.66  Aligned_cols=93  Identities=17%  Similarity=0.172  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-------
Q 005877          353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-------  423 (672)
Q Consensus       353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------  423 (672)
                      .++.+||..+..    .+++++|+.+|++|++  +.++.+++++|.+|..    .+++++|+..|+++++..+       
T Consensus         9 ~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~   80 (127)
T 4gcn_A            9 IAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE----EKKFAECVQFCEKAVEVGRETRADYK   80 (127)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH----hhhHHHHHHHHHHHHHhCcccchhhH
Confidence            344555555555    5555555555555554  2345555555555555    5555555555555555432       


Q ss_pred             --hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          424 --WSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       424 --~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                        ..++.++|.++...|++++|+.+|+++++.
T Consensus        81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence              124556666666666777777777666554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.96  E-value=8.1e-10  Score=114.09  Aligned_cols=143  Identities=18%  Similarity=0.169  Sum_probs=99.3

Q ss_pred             CCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---------------HHHHHHHHHHH
Q 005877          406 KNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--Y---------------EVAQSNAAWIL  466 (672)
Q Consensus       406 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~---------------~~a~~nla~~l  466 (672)
                      +++++|+.+|+++++..  .+.++..+|..++..|++++|+..|+++++..  +               ..++.|+|.++
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  206 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH  206 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444333  23345555555555566666666666554442  2               57788888888


Q ss_pred             HHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHH
Q 005877          467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQA  542 (672)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a  542 (672)
                      .+                .+++++|+.+++++++  +.++.+++++|.+|.    ..+++++|+.+|++|++  ++++.+
T Consensus       207 ~~----------------~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~----~~g~~~~A~~~~~~al~l~P~~~~a  266 (336)
T 1p5q_A          207 LK----------------LQAFSAAIESCNKALELDSNNEKGLSRRGEAHL----AVNDFELARADFQKVLQLYPNNKAA  266 (336)
T ss_dssp             HH----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HH----------------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHCCCCHHH
Confidence            87                6788899999987654  567888889999998    78899999999999876  467888


Q ss_pred             HHHHHHHHHcCCCCCCCHHHH-HHHHHHHHh
Q 005877          543 MFNLGYMHEHGQGLPLDLHLA-KRYYDQALE  572 (672)
Q Consensus       543 ~~~Lg~~y~~g~g~~~d~~~A-~~~~~~A~~  572 (672)
                      +.+||.++..    .+++++| ...|++.+.
T Consensus       267 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          267 KTQLAVCQQR----IRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            8999988876    6777777 556666653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.95  E-value=7.2e-09  Score=97.73  Aligned_cols=157  Identities=15%  Similarity=0.115  Sum_probs=99.8

Q ss_pred             hhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHhcC
Q 005877          369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--------PWSSLSRWALESYLKG  438 (672)
Q Consensus       369 ~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~g  438 (672)
                      .|++++|.+.++.....  ....++..+|.++..    .+++++|+.+++++++..        ...++..+|.++...|
T Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            5 AHDYALAERQAQALLAHPATASGARFMLGYVYAF----MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            55666666633333221  234556666666665    566666666666665521        1224555555666666


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC-C----HHHHHHHHHH
Q 005877          439 DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-N----EHAALLIGDA  513 (672)
Q Consensus       439 ~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~----~~a~~~lG~~  513 (672)
                      ++++|+.+++++++.-                                            ...+ +    ..+++++|.+
T Consensus        81 ~~~~A~~~~~~al~~~--------------------------------------------~~~~~~~~~~~~~~~~lg~~  116 (203)
T 3gw4_A           81 NWDAARRCFLEERELL--------------------------------------------ASLPEDPLAASANAYEVATV  116 (203)
T ss_dssp             CHHHHHHHHHHHHHHH--------------------------------------------HHSCCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH--------------------------------------------HHcCccHHHHHHHHHHHHHH
Confidence            6666655555555431                                            0111 1    3467899999


Q ss_pred             HHhCCCCCCCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcchh
Q 005877          514 YYYGRGTQRDYERAAEAYMHARSQ----SN----AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPV  581 (672)
Q Consensus       514 y~~g~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  581 (672)
                      +.    ..+++++|+.+++++++.    ++    ..++.+||.+|..    .|++++|.+++++|+++.....-+.
T Consensus       117 ~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~  184 (203)
T 3gw4_A          117 AL----HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ----EKNLLEAQQHWLRARDIFAELEDSE  184 (203)
T ss_dssp             HH----HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HH----HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCCHH
Confidence            99    889999999999999752    33    3457899999987    8999999999999998754444333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.95  E-value=9.4e-09  Score=96.91  Aligned_cols=145  Identities=14%  Similarity=0.148  Sum_probs=80.3

Q ss_pred             ccCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHc
Q 005877          222 SRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--------GEPQSMEFLGEIYAR  291 (672)
Q Consensus       222 ~~g~~~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~  291 (672)
                      ..|++++|.+.++.....  ..+.++..+|.++...     +++++|+.+|+++++.        ..+.++..+|.+|..
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~   78 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFM-----DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM   78 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            456777777733332222  3566677777777666     3777777777777651        224556666666666


Q ss_pred             CCCCcCCHHHHHHHHHHHHHc----C-C----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHH
Q 005877          292 GAGVERNYTKALEWLTHAARQ----Q-L----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGG  354 (672)
Q Consensus       292 g~g~~~~~~~A~~~~~~a~~~----~-~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a  354 (672)
                          .+++++|+.+++++++.    + +    ..++..+|.++..     .|++++|+.+++++++.    ++    +.+
T Consensus        79 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  149 (203)
T 3gw4_A           79 ----AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH-----FGDLAGARQEYEKSLVYAQQADDQVAIACA  149 (203)
T ss_dssp             ----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ----cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence                66666666666666643    1 1    2345556666654     34666666666665532    22    223


Q ss_pred             HHHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877          355 HYNLGVMYYKGIGVKRDVKLACKYFLVAAN  384 (672)
Q Consensus       355 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~  384 (672)
                      +.++|.++..    .+++++|+.+|+++++
T Consensus       150 ~~~la~~~~~----~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          150 FRGLGDLAQQ----EKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----CcCHHHHHHHHHHHHH
Confidence            3455555555    5555555555555543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.94  E-value=3e-08  Score=89.97  Aligned_cols=126  Identities=13%  Similarity=0.049  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCC
Q 005877          124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSP  201 (672)
Q Consensus       124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~  201 (672)
                      +..++.+|.+|..    .+++++|+.+|++++.  +.++.+++.+|.++...|++++|+.+|+++++.            
T Consensus        13 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------------   76 (166)
T 1a17_A           13 AEELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------------   76 (166)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Confidence            3456667777666    6677777777777665  456677777777777777777777777766552            


Q ss_pred             cccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCH
Q 005877          202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEP  279 (672)
Q Consensus       202 ~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~  279 (672)
                                                          .+.++.+++.+|.++...     +++++|+.+|+++++.  .++
T Consensus        77 ------------------------------------~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           77 ------------------------------------DKKYIKGYYRRAASNMAL-----GKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             ------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHSTTCH
T ss_pred             ------------------------------------CcccHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhCCCCH
Confidence                                                234556667777777666     3777777777777653  455


Q ss_pred             HHHHHHHH--HHHcCCCCcCCHHHHHHHHHHHH
Q 005877          280 QSMEFLGE--IYARGAGVERNYTKALEWLTHAA  310 (672)
Q Consensus       280 ~a~~~Lg~--~y~~g~g~~~~~~~A~~~~~~a~  310 (672)
                      .++..++.  .+..    .+++++|+.+++++.
T Consensus       116 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~  144 (166)
T 1a17_A          116 DAKMKYQECNKIVK----QKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHcccchH
Confidence            55533333  3555    566777776666654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.93  E-value=7.4e-07  Score=90.31  Aligned_cols=230  Identities=9%  Similarity=-0.033  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhc----------HHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCC
Q 005877          337 TKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD----------VKLACKYFLVAAN--AGHQKAFYQLAKMFHTGV  402 (672)
Q Consensus       337 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~----------~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~  402 (672)
                      ++|+.++.+++..  ++..+++.-+.+...    .+.          +++++.++.+++.  +.+..++++-+.++..  
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~----l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~--  120 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR--  120 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHH----hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc--
Confidence            5788888888876  477888888877765    332          7899999999987  4588999999999886  


Q ss_pred             CccC--CHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcc
Q 005877          403 GLKK--NLHMATALYKLVAERGP--WSSLSRWALESYLKGD-VGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMC  475 (672)
Q Consensus       403 g~~~--~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~-~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~  475 (672)
                        .+  ++++++.++.++++.++  ..++...+.+....|. +++++.++.++++.  .+..|+++.+.++.......-.
T Consensus       121 --l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~  198 (331)
T 3dss_A          121 --LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  198 (331)
T ss_dssp             --CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred             --cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence              34  58999999999999984  5678888998888888 69999999999766  5999999999999885321000


Q ss_pred             cCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCC-------CCHHHHHHHHHHHHhc--CCHHHHH
Q 005877          476 MGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQ-------RDYERAAEAYMHARSQ--SNAQAMF  544 (672)
Q Consensus       476 ~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~-------~d~~~A~~~~~~A~~~--~~~~a~~  544 (672)
                      .  .....+.+.++++++++.+++  .|+|..+++.+.+++..+.|..       +-++++++++++.++.  ++.-++.
T Consensus       199 ~--~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~  276 (331)
T 3dss_A          199 G--PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL  276 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             c--cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence            0  001123478999999999875  6788999998988888765532       4588999999999764  5654444


Q ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          545 NLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       545 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      .+..+ ..+....+..++...++.+.+++||..
T Consensus       277 ~~~~~-~~~~~~~~~~~~~~~~l~~l~~~Dp~r  308 (331)
T 3dss_A          277 TIILL-MRALDPLLYEKETLQYFSTLKAVDPMR  308 (331)
T ss_dssp             HHHHH-HHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHH-HHhhcccccHHHHHHHHHHHHHhCcch
Confidence            44332 222233577889999999999999984

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.92  E-value=2.8e-08  Score=90.15  Aligned_cols=125  Identities=15%  Similarity=0.061  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHH
Q 005877          315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA  390 (672)
Q Consensus       315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a  390 (672)
                      +..+..+|.++..     .+++++|+.+|+++++.  .++.+++++|.++..    .+++++|+.+|+++++.  .++.+
T Consensus        13 ~~~~~~~a~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~   83 (166)
T 1a17_A           13 AEELKTQANDYFK-----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKG   83 (166)
T ss_dssp             HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHH
Confidence            4455666666664     45777777777776654  356677777777776    67777777777777653  35667


Q ss_pred             HHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877          391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL--SRWALESYLKGDVGKAFLLYSRMAE  452 (672)
Q Consensus       391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~--~~lg~~~~~~g~~~~A~~~~~~a~~  452 (672)
                      ++++|.++..    .+++++|+.+|+++++..+  ..++  ..++..+...|++++|+..+.++.+
T Consensus        84 ~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           84 YYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            7777777776    6777777777777777654  2333  2333346667777888877776643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.92  E-value=6.4e-09  Score=93.37  Aligned_cols=105  Identities=14%  Similarity=-0.008  Sum_probs=83.1

Q ss_pred             HHHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHH
Q 005877          341 EYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYK  416 (672)
Q Consensus       341 ~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~  416 (672)
                      ..|+++++.+  ++.+++.+|.++..    .+++++|+..|+++++  +.++.+++++|.++..    .+++++|+.+|+
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~   79 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQ----SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA----MGQYDLAIHSYS   79 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----HhhHHHHHHHHH
Confidence            3566666653  56778888888888    7888888888888876  4477888888888887    788888888888


Q ss_pred             HHHHcC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          417 LVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       417 ~a~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      ++++..  ++.+++++|.++...|++++|+.+|+++++.
T Consensus        80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            888776  4567888888888888888888888888665

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.91  E-value=3.3e-08  Score=105.45  Aligned_cols=190  Identities=15%  Similarity=0.072  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHcCCCCcCCHHHH
Q 005877          242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-------------------EPQSMEFLGEIYARGAGVERNYTKA  302 (672)
Q Consensus       242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-------------------~~~a~~~Lg~~y~~g~g~~~~~~~A  302 (672)
                      |.+.+.-|.-+...     +++++|++.|.++++..                   ...++..||.+|..    .+++++|
T Consensus         4 p~~~l~~a~~l~~~-----~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~----~~~~~~a   74 (434)
T 4b4t_Q            4 PGSKLEEARRLVNE-----KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVT----MGAKDKL   74 (434)
T ss_dssp             TTHHHHHHHHHHHH-----TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHH----HTCHHHH
T ss_pred             hHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHH----CCCHHHH
Confidence            34455556655555     37888888888877631                   12468899999999    9999999


Q ss_pred             HHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCC
Q 005877          303 LEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------EEAGGHYNLGVMYYKGI  366 (672)
Q Consensus       303 ~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~  366 (672)
                      +++|+++.+.    +.    ......+|.++..     .+++++|+.+++++++.        ..+.++.+||.+|..  
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--  147 (434)
T 4b4t_Q           75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQV-----PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ--  147 (434)
T ss_dssp             HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSC-----CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH--
Confidence            9999998753    21    2345677877764     56999999999998763        246788999999999  


Q ss_pred             CchhcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC-----Ch----hHHHH
Q 005877          367 GVKRDVKLACKYFLVAANA--------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-----PW----SSLSR  429 (672)
Q Consensus       367 g~~~~~~~A~~~~~~A~~~--------~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~----~a~~~  429 (672)
                        .|++.+|..+++++...        ....++..++.+|..    .+|+++|..+|+++....     ++    ..+..
T Consensus       148 --~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  221 (434)
T 4b4t_Q          148 --KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAANSIYCPTQTVAELDLM  221 (434)
T ss_dssp             --HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             --ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence              99999999999998652        135788999999998    999999999999997653     22    23566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          430 WALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       430 lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      +|..+...|++++|..+|.++.+.
T Consensus       222 ~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          222 SGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHH
Confidence            788888999999999999999653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.90  E-value=1.9e-08  Score=92.83  Aligned_cols=120  Identities=11%  Similarity=0.118  Sum_probs=88.3

Q ss_pred             cCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCC
Q 005877          405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFC  482 (672)
Q Consensus       405 ~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~  482 (672)
                      .+++++|+.+++++++..|  +.++..+|.++...|++++|+.+|+++++.                             
T Consensus        23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----------------------------   73 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL-----------------------------   73 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------
T ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------------------
Confidence            5566666666666666553  345566666666666666666666655442                             


Q ss_pred             CchHhHHHHHHHHHHHHhCCCHHHHHHHHHH-HHhCCCCCCCH--HHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCC
Q 005877          483 TDAERHQCAHSLWWQASEQGNEHAALLIGDA-YYYGRGTQRDY--ERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLP  557 (672)
Q Consensus       483 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~-y~~g~g~~~d~--~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~  557 (672)
                                       .+.++.+++.+|.+ |.    ..+++  ++|+.+|+++++  ++++.+++++|.+|..    .
T Consensus        74 -----------------~p~~~~~~~~la~~l~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~  128 (177)
T 2e2e_A           74 -----------------RGENAELYAALATVLYY----QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM----Q  128 (177)
T ss_dssp             -----------------HCSCHHHHHHHHHHHHH----HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----T
T ss_pred             -----------------CCCCHHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----c
Confidence                             35567777888888 66    66888  999999999977  4789999999999987    8


Q ss_pred             CCHHHHHHHHHHHHhcCCCCc
Q 005877          558 LDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       558 ~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      +++++|+.+|+++++.+|+..
T Consensus       129 g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          129 ANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTS
T ss_pred             ccHHHHHHHHHHHHhhCCCCc
Confidence            999999999999999998863

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.88  E-value=1.1e-08  Score=102.60  Aligned_cols=99  Identities=13%  Similarity=0.003  Sum_probs=88.3

Q ss_pred             CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC
Q 005877           84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN  159 (672)
Q Consensus        84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~  159 (672)
                      .+.+++.+|..++.       .+++++|+..|+++.  ++.++.+++.+|.+|..    .+++++|+.+|++++.  +++
T Consensus         3 ~a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~   71 (281)
T 2c2l_A            3 SAQELKEQGNRLFV-------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQS   71 (281)
T ss_dssp             CHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTTC
T ss_pred             hHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCC
Confidence            45667788888775       589999999999954  56899999999999999    9999999999999987  688


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhh
Q 005877          160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS  193 (672)
Q Consensus       160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~  193 (672)
                      +.+++.+|.+|...|++++|+.+|+++++..|..
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999987753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.88  E-value=2.3e-08  Score=106.62  Aligned_cols=210  Identities=12%  Similarity=0.066  Sum_probs=152.8

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH
Q 005877          159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ  238 (672)
Q Consensus       159 ~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~  238 (672)
                      .|.+.+.-|..+...|++++|++.|.++++..+......                       ...+........      
T Consensus         3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~------   53 (434)
T 4b4t_Q            3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAA-----------------------AGASVDDKRRNE------   53 (434)
T ss_dssp             STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBS-----------------------SSSSBCSHHHHH------
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhH-----------------------HHHHHHHHHhhh------
Confidence            355677778888889999999999999987543211100                       000011111111      


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 005877          239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAA  310 (672)
Q Consensus       239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~  310 (672)
                        ...+...||.+|...     +++++|+++|+++.+.    +.    ......+|.++..    ++++++|+.++++++
T Consensus        54 --~~~al~~l~~~y~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~  122 (434)
T 4b4t_Q           54 --QETSILELGQLYVTM-----GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQV----PDSLDDQIFVCEKSI  122 (434)
T ss_dssp             --HHHHHHHHHHHHHHH-----TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSC----CSCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence              234567889999887     4999999999988762    22    2345667888777    889999999999987


Q ss_pred             Hc--------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCCchhcHHH
Q 005877          311 RQ--------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------EEAGGHYNLGVMYYKGIGVKRDVKL  374 (672)
Q Consensus       311 ~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~  374 (672)
                      +.        ....+...||.+|..     .|++++|+.+++++...        ....++..+|.+|..    .+|+++
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  193 (434)
T 4b4t_Q          123 EFAKREKRVFLKHSLSIKLATLHYQ-----KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAK  193 (434)
T ss_dssp             HHHHHSSCCSSHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHH
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHHH-----ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHH
Confidence            53        235678899999986     67999999999988653        236788999999999    999999


Q ss_pred             HHHHHHHHHHc----C-C----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHc
Q 005877          375 ACKYFLVAANA----G-H----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER  421 (672)
Q Consensus       375 A~~~~~~A~~~----~-~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~  421 (672)
                      |..+|+++...    . +    ...+..+|.++..    .+++++|..+|.++.+.
T Consensus       194 A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          194 SKASLTAARTAANSIYCPTQTVAELDLMSGILHCE----DKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHH
Confidence            99999998752    2 2    2455677777776    89999999999998764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.87  E-value=5.8e-08  Score=84.02  Aligned_cols=94  Identities=16%  Similarity=0.080  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL  427 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~  427 (672)
                      +..++.+|..+..    .+++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+..|+++++..|  +.++
T Consensus         4 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~   75 (126)
T 3upv_A            4 AEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRAY   75 (126)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHH
Confidence            4556667777766    67777777777777653  356777777777776    6777777777777776653  4566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      +.+|.++...|++++|+..|+++++.
T Consensus        76 ~~lg~~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           76 IRKATAQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence            77777777777777777777777544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.86  E-value=2.8e-08  Score=86.02  Aligned_cols=95  Identities=11%  Similarity=-0.062  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCC
Q 005877          124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSP  201 (672)
Q Consensus       124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~  201 (672)
                      +..+..+|..+..    .+++++|+.+|++++.  ++++.++..+|.+|...|++++|+..|+++++.            
T Consensus         4 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------   67 (126)
T 3upv_A            4 AEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------------   67 (126)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------
Confidence            4566777777777    7777888888877765  567777777787777777777777777777653            


Q ss_pred             cccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 005877          202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD  275 (672)
Q Consensus       202 ~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~  275 (672)
                                                          ++.++.+++.+|.++...     +++++|+.+|+++++
T Consensus        68 ------------------------------------~p~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~  100 (126)
T 3upv_A           68 ------------------------------------DPNFVRAYIRKATAQIAV-----KEYASALETLDAART  100 (126)
T ss_dssp             ------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHH
T ss_pred             ------------------------------------CCCcHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHH
Confidence                                                334667777777777766     377777777777765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.85  E-value=3.1e-05  Score=86.70  Aligned_cols=192  Identities=8%  Similarity=-0.028  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHH-HHHHHHHHcCChhHHH--HHHHHHHhcCCHHHHHHH
Q 005877          372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMAT-ALYKLVAERGPWSSLS--RWALESYLKGDVGKAFLL  446 (672)
Q Consensus       372 ~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~-~~~~~a~~~~~~~a~~--~lg~~~~~~g~~~~A~~~  446 (672)
                      .+.....|++++..  ..+..++..+.....    .++.++|. ..|++|+...|.....  .++......|++++|...
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~----~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~i  400 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGE----KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT  400 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            34566789999874  578999999988876    67778997 9999999988766544  456667788999999999


Q ss_pred             HHHHHHcC------------------------CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC-
Q 005877          447 YSRMAELG------------------------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ-  501 (672)
Q Consensus       447 ~~~a~~~g------------------------~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-  501 (672)
                      |+++++..                        ....+..++.+..+                .++.+.|..++.+|.+. 
T Consensus       401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR----------------~~~l~~AR~vf~~A~~~~  464 (679)
T 4e6h_A          401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR----------------IQGLAASRKIFGKCRRLK  464 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhc
Confidence            99998641                        11123334444333                56789999999999876 


Q ss_pred             C--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          502 G--NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       502 ~--~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      .  ....+...+.+-+.   ..+|+++|...|+++++.  .++..+...+.+...    .++.++|+.+|++|+...|+.
T Consensus       465 ~~~~~~lyi~~A~lE~~---~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~----~~~~~~AR~lferal~~~~~~  537 (679)
T 4e6h_A          465 KLVTPDIYLENAYIEYH---ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY----VNEESQVKSLFESSIDKISDS  537 (679)
T ss_dssp             GGSCTHHHHHHHHHHHT---TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHTTTSSST
T ss_pred             CCCChHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCH
Confidence            3  35566666766652   246799999999999984  666666555655444    689999999999999988752


Q ss_pred             cchhHHHHHHHHHHH
Q 005877          578 KLPVTLALTSLWIRK  592 (672)
Q Consensus       578 ~~~~~~~~~~~~~~~  592 (672)
                      .  ....++..|++.
T Consensus       538 ~--~~~~lw~~~~~f  550 (679)
T 4e6h_A          538 H--LLKMIFQKVIFF  550 (679)
T ss_dssp             T--HHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHH
Confidence            1  223344444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.85  E-value=4.3e-08  Score=85.07  Aligned_cols=63  Identities=13%  Similarity=-0.123  Sum_probs=41.1

Q ss_pred             CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877          122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE  188 (672)
Q Consensus       122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~  188 (672)
                      .++.+++.+|.+|..    .+++++|+.+|+++++  +.+..+++.+|.+|...+++++|+.+|+++++
T Consensus        14 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~   78 (133)
T 2lni_A           14 DLALMVKNKGNECFQ----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ   78 (133)
T ss_dssp             CHHHHHHHHHHHHHH----TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            345666666666666    6666777777766665  35566666666666666666666666666654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.85  E-value=1.5e-08  Score=90.13  Aligned_cols=102  Identities=12%  Similarity=-0.006  Sum_probs=91.7

Q ss_pred             CCCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh-
Q 005877           80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-  156 (672)
Q Consensus        80 ~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-  156 (672)
                      .+|+++.+++.+|..++.       .+++++|+..|+++  .++.++.+++.+|.+|..    .+++++|+.+|++++. 
T Consensus        13 ~~p~~~~~~~~~a~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~   81 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQ-------AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS----LGLYEQALQSYSYGALM   81 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH-------HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhc
Confidence            445667788889988875       58999999999995  567899999999999999    9999999999999986 


Q ss_pred             -CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877          157 -GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN  192 (672)
Q Consensus       157 -~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~  192 (672)
                       ++++.+++.+|.+|...|++++|+.+|+++++..|.
T Consensus        82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  118 (142)
T 2xcb_A           82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA  118 (142)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence             789999999999999999999999999999998764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.84  E-value=5.6e-08  Score=88.55  Aligned_cols=101  Identities=21%  Similarity=0.173  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCH
Q 005877          425 SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNE  504 (672)
Q Consensus       425 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  504 (672)
                      ..++.+|..++..|++++|+.+|+++++.                                              .+.++
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------------------------------------~p~~~   45 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSI----------------------------------------------APANP   45 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------------------STTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------------CCcCH
Confidence            34566677777777777777777766553                                              34567


Q ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877          505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  579 (672)
                      .+++++|.+|.    ..+++++|+.+|+++++  .+++.+++++|.+|..    .+++++|+.+|+++++++|+...
T Consensus        46 ~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           46 IYLSNRAAAYS----ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD----MADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHH----HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCchH
Confidence            78888999998    88999999999999977  4789999999999987    89999999999999999887653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.81  E-value=5.3e-08  Score=83.95  Aligned_cols=62  Identities=16%  Similarity=-0.073  Sum_probs=38.3

Q ss_pred             ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877          123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE  188 (672)
Q Consensus       123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~  188 (672)
                      ++.+++.+|.++..    .+++++|+.+|++++.  +.++.++..+|.++...+++++|+.+|+++++
T Consensus        11 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   74 (131)
T 2vyi_A           11 EAERLKTEGNEQMK----VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC   74 (131)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence            34555666666665    6666666666666654  45566666666666666666666666666544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.81  E-value=3.8e-08  Score=90.81  Aligned_cols=79  Identities=15%  Similarity=0.178  Sum_probs=38.5

Q ss_pred             hhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHH-HhccCCH--H
Q 005877          105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYT-YLRQDMH--D  177 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~-y~~~~~~--~  177 (672)
                      .+++++|+..++++.  ++.++.+++.+|.+|..    .+++++|+.+|++++.  +.++.++..+|.+ +...+++  +
T Consensus        23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            455555555555532  33455555555555555    5555555555555543  3455555555555 4444444  5


Q ss_pred             HHHHHHHHHH
Q 005877          178 KAVKLYAELA  187 (672)
Q Consensus       178 ~A~~~y~~a~  187 (672)
                      +|+.+|++++
T Consensus        99 ~A~~~~~~al  108 (177)
T 2e2e_A           99 QTRAMIDKAL  108 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.80  E-value=9.7e-08  Score=82.77  Aligned_cols=80  Identities=19%  Similarity=0.194  Sum_probs=35.5

Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHH
Q 005877          335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM  410 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~  410 (672)
                      ++++|+.+|+++++.  +++.+++.+|.+|..    .+++++|+.+|+++++.  .++.+++++|.++..    .+++++
T Consensus        31 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~  102 (133)
T 2lni_A           31 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA----MKDYTK  102 (133)
T ss_dssp             CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHH
T ss_pred             CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----HhhHHH
Confidence            444444444444433  234444444444444    44444444444444432  234444444444443    444444


Q ss_pred             HHHHHHHHHHcC
Q 005877          411 ATALYKLVAERG  422 (672)
Q Consensus       411 A~~~~~~a~~~~  422 (672)
                      |+.+|+++++..
T Consensus       103 A~~~~~~~~~~~  114 (133)
T 2lni_A          103 AMDVYQKALDLD  114 (133)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            444444444433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.80  E-value=2.6e-08  Score=85.84  Aligned_cols=97  Identities=18%  Similarity=0.078  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHH
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHA  506 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a  506 (672)
                      .+.+|..+...|++++|+..|+++++.                                              .++++.+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------------------------------------------~P~~~~a   53 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK----------------------------------------------EPEREEA   53 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------------------STTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------------------------------CCCCHHH
Confidence            456666666677777777666666553                                              4567778


Q ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          507 ALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       507 ~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      ++.+|.++.    ..+++++|+.+|++|++  ++++.++++||.+|..    .|++++|+.+|+++++.+|+.
T Consensus        54 ~~~lg~~~~----~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           54 WRSLGLTQA----ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN----EHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCC
Confidence            888888888    78899999999999876  4788899999999887    789999999999999988763

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.80  E-value=3.3e-08  Score=87.77  Aligned_cols=104  Identities=16%  Similarity=-0.018  Sum_probs=78.1

Q ss_pred             HHHHHHhCC--CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHH
Q 005877          342 YFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKL  417 (672)
Q Consensus       342 ~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~  417 (672)
                      .|+++++.+  ++.+++.+|..+..    .+++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+.+|++
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~   77 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQ----AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS----LGLYEQALQSYSY   77 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----HhhHHHHHHHHHH
Confidence            344444443  56677788888887    78888888888888763  467888888888887    7888888888888


Q ss_pred             HHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          418 VAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       418 a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      +++..|  +.+++.+|.++...|++++|+.+|+++++.
T Consensus        78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            887763  567788888888888888888888888654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.80  E-value=1.2e-08  Score=96.40  Aligned_cols=121  Identities=16%  Similarity=0.065  Sum_probs=81.6

Q ss_pred             CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC--CCH----------------HHHHHHHHHHhccCCHHHHHHHH
Q 005877          122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNI----------------QSKMAVAYTYLRQDMHDKAVKLY  183 (672)
Q Consensus       122 ~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~----------------~a~~~Lg~~y~~~~~~~~A~~~y  183 (672)
                      ..+..+..+|..+..    .+++++|+.+|++++..  .++                .++..+|.+|...+++++|+.+|
T Consensus        36 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  111 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFK----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA  111 (198)
T ss_dssp             HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            344566677777776    77777888888777762  333                56666777777777777777777


Q ss_pred             HHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCH
Q 005877          184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDR  263 (672)
Q Consensus       184 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~  263 (672)
                      +++++.                                                ++.++.+++.+|.+|...     +++
T Consensus       112 ~~al~~------------------------------------------------~p~~~~~~~~lg~~~~~~-----~~~  138 (198)
T 2fbn_A          112 SKVLKI------------------------------------------------DKNNVKALYKLGVANMYF-----GFL  138 (198)
T ss_dssp             HHHHHH------------------------------------------------STTCHHHHHHHHHHHHHH-----TCH
T ss_pred             HHHHHh------------------------------------------------CcccHHHHHHHHHHHHHc-----ccH
Confidence            666552                                                334677778888887776     478


Q ss_pred             HHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHH
Q 005877          264 TKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKAL  303 (672)
Q Consensus       264 ~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~  303 (672)
                      ++|+.+|+++++  ++++.+...++.++..    .++..++.
T Consensus       139 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~  176 (198)
T 2fbn_A          139 EEAKENLYKAASLNPNNLDIRNSYELCVNK----LKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HHHHHC--
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----HHHHHHHH
Confidence            888888888765  3577777777777766    55555444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.79  E-value=9.1e-09  Score=97.16  Aligned_cols=136  Identities=17%  Similarity=0.050  Sum_probs=81.0

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCH----------------HHH
Q 005877          296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA----------------GGH  355 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~----------------~a~  355 (672)
                      .++++++.+.+....+.  ..+..+..+|..+..     .+++++|+.+|+++++.  .++                .++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (198)
T 2fbn_A           17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK-----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN   91 (198)
T ss_dssp             -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence            44555554444433321  234455666666654     45666666666666654  222                667


Q ss_pred             HHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHH
Q 005877          356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWA  431 (672)
Q Consensus       356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg  431 (672)
                      +++|.+|..    .+++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|+++++..|  ..+...++
T Consensus        92 ~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~  163 (198)
T 2fbn_A           92 LNLATCYNK----NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYE  163 (198)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHH----hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            777777777    77777777777777663  456777777777776    7777777777777776653  44566666


Q ss_pred             HHHHhcCCHHHHH
Q 005877          432 LESYLKGDVGKAF  444 (672)
Q Consensus       432 ~~~~~~g~~~~A~  444 (672)
                      .++...++..++.
T Consensus       164 ~~~~~~~~~~~~~  176 (198)
T 2fbn_A          164 LCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHH
Confidence            6666555555444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.77  E-value=1e-07  Score=86.79  Aligned_cols=94  Identities=15%  Similarity=0.089  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL  427 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~  427 (672)
                      +.+++.+|.++..    .+++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|+++++..+  +.++
T Consensus        11 a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~   82 (164)
T 3sz7_A           11 SDKLKSEGNAAMA----RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA----SGQHEKAAEDAELATVVDPKYSKAW   82 (164)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            4455566666666    66666666666666553  355666666666665    6666666666666666553  4456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      +.+|.++...|++++|+.+|+++++.
T Consensus        83 ~~lg~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           83 SRLGLARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            66666666666666666666666443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.77  E-value=3.2e-07  Score=91.64  Aligned_cols=174  Identities=11%  Similarity=0.012  Sum_probs=104.9

Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCccCCHHHHH
Q 005877          339 AKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GHQKAFYQLAKMFHTGVGLKKNLHMAT  412 (672)
Q Consensus       339 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~L~~~y~~g~g~~~~~~~A~  412 (672)
                      |+.+|++.++.  ..+.+.+.+|.++..    .+++++|++++.+.+..    ++.++...++.++..    .++.++|.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~----~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~----~~r~d~A~  156 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAI----LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL----NNNVSTAS  156 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH----CCCHHHHH
Confidence            55666665543  345555666666666    66666666666666554    345566666666665    56666666


Q ss_pred             HHHHHHHHcCC------hhHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCc
Q 005877          413 ALYKLVAERGP------WSSLSRWALE--SYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTD  484 (672)
Q Consensus       413 ~~~~~a~~~~~------~~a~~~lg~~--~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~  484 (672)
                      ..+++..+..+      ......++..  ....|                                              
T Consensus       157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g----------------------------------------------  190 (310)
T 3mv2_B          157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN----------------------------------------------  190 (310)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred             HHHHHHHhcCccccccchHHHHHHHHHHHHHHhC----------------------------------------------
Confidence            66666555544      2233333322  22222                                              


Q ss_pred             hHhHHHHHHHHHHHHhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHH
Q 005877          485 AERHQCAHSLWWQASEQGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS------------QSNAQAMFNLGY  548 (672)
Q Consensus       485 ~~~~~~A~~~~~~a~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~------------~~~~~a~~~Lg~  548 (672)
                      .+++.+|...|+...+..+    +..+++   ++.    ..+++++|...+++..+            ++++.++.|+..
T Consensus       191 ~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~----~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~  263 (310)
T 3mv2_B          191 KETATSNFYYYEELSQTFPTWKTQLGLLN---LHL----QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT  263 (310)
T ss_dssp             CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHH----HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHH----HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence            1134445555554433322    223334   566    67899999999886543            568899988877


Q ss_pred             HHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877          549 MHEHGQGLPLDLHLAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       549 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  579 (672)
                      +..+    .|+  .|.+++.++.+.+|+...
T Consensus       264 l~~~----lgk--~a~~l~~qL~~~~P~hp~  288 (310)
T 3mv2_B          264 LALM----QGL--DTEDLTNQLVKLDHEHAF  288 (310)
T ss_dssp             HHHH----TTC--TTHHHHHHHHHTTCCCHH
T ss_pred             HHHH----hCh--HHHHHHHHHHHhCCCChH
Confidence            7665    444  888999999999988754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.77  E-value=6.8e-08  Score=86.69  Aligned_cols=91  Identities=23%  Similarity=0.272  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--
Q 005877          280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--  349 (672)
Q Consensus       280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--  349 (672)
                      .++..+|.+|..    .+++++|+.+++++++.    ++    ..++..+|.+|..     .+++++|+.+++++++.  
T Consensus        10 ~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~a~~~~~   80 (164)
T 3ro3_A           10 RAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF-----LGEFETASEYYKKTLLLAR   80 (164)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHH
Confidence            345566666665    66666666666666543    11    1244555555553     34555555555555432  


Q ss_pred             --CC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHH
Q 005877          350 --EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA  383 (672)
Q Consensus       350 --~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~  383 (672)
                        ++    ..++.++|.++..    .+++++|+.++++++
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           81 QLKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHH
Confidence              11    2344444555544    445555555554443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.77  E-value=7.1e-08  Score=86.54  Aligned_cols=126  Identities=13%  Similarity=0.069  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc-
Q 005877          315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-  385 (672)
Q Consensus       315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-  385 (672)
                      ..++..+|.+|..     .+++++|+.+++++++.    ++    ..++.++|.+|..    .+++++|+.+|+++++. 
T Consensus         9 ~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~   79 (164)
T 3ro3_A            9 GRAFGNLGNTHYL-----LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF----LGEFETASEYYKKTLLLA   79 (164)
T ss_dssp             HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Confidence            4567889999986     57999999999999875    22    3588999999999    99999999999999763 


Q ss_pred             ---CC----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----C----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877          386 ---GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRM  450 (672)
Q Consensus       386 ---~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~lg~~~~~~g~~~~A~~~~~~a  450 (672)
                         ++    ..++.++|.++..    .+++++|+.+++++++..    +    ..++..+|.++...|++++|+.+++++
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           80 RQLKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence               22    5678999999998    899999999999998653    2    346788999999999999999999999


Q ss_pred             HHc
Q 005877          451 AEL  453 (672)
Q Consensus       451 ~~~  453 (672)
                      ++.
T Consensus       156 ~~~  158 (164)
T 3ro3_A          156 LEI  158 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.76  E-value=5.4e-05  Score=84.70  Aligned_cols=420  Identities=7%  Similarity=-0.046  Sum_probs=251.9

Q ss_pred             HHHHHHH--HHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCC---HHHHHHHH
Q 005877          111 ATSEVES--AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDM---HDKAVKLY  183 (672)
Q Consensus       111 A~~~~~~--a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~---~~~A~~~y  183 (672)
                      -+..|++  ..++.+...+..+......    .++...+...|++++.  +............-...++   ++++...|
T Consensus        51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~----~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf  126 (679)
T 4e6h_A           51 VIGKLNDMIEEQPTDIFLYVKLLKHHVS----LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL  126 (679)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence            3444555  3456888899888888776    6789999999999887  6777888777777777788   99999999


Q ss_pred             HHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCC--------hHHHHHHHHHHHHc-C-----CHHHHHHHH
Q 005877          184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGE--------DDEAFQILEYQAQK-G-----NAGAMYKIG  249 (672)
Q Consensus       184 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~--------~~~Ai~~~~~aa~~-~-----~~~a~~~Lg  249 (672)
                      ++++...+       ..|.+.   +  +.. .+..+. ..++        .+...+.|+.+.+. |     ....+....
T Consensus       127 eRal~~~~-------~~~sv~---L--W~~-Yl~f~~-~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi  192 (679)
T 4e6h_A          127 ARCLSKEL-------GNNDLS---L--WLS-YITYVR-KKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYL  192 (679)
T ss_dssp             HHHTCSSS-------CCCCHH---H--HHH-HHHHHH-HHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred             HHHHHhcC-------CCCCHH---H--HHH-HHHHHH-HhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            99876320       001000   0  000 000000 1111        12344677776643 2     334433333


Q ss_pred             HHHHhcCCC----cccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcC--CC--------CcCCHHHHHHHHHHHH---
Q 005877          250 LFYYFGLRG----LRRDRTKALMWFSKAADKG--EPQSMEFLGEIYARG--AG--------VERNYTKALEWLTHAA---  310 (672)
Q Consensus       250 ~~y~~~~~~----~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g--~g--------~~~~~~~A~~~~~~a~---  310 (672)
                      .........    ..++.+.+...|++++...  +..-.+..-.-+..+  ..        ...+|..|..+|+..-   
T Consensus       193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~  272 (679)
T 4e6h_A          193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNIT  272 (679)
T ss_dssp             HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            332211000    0135678888999988632  111111100111110  00        0234555555554421   


Q ss_pred             ---HcC-------------------C-HHHHHHHHHHHH-cCC--CCCc-CCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 005877          311 ---RQQ-------------------L-YSAYNGIGYLYV-KGY--GVEK-KNYTKAKEYFEKAADN--EEAGGHYNLGVM  361 (672)
Q Consensus       311 ---~~~-------------------~-~~a~~~Lg~~y~-~g~--g~~~-~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~  361 (672)
                         +..                   . .........+-+ ...  +.+. ...+.....|++++..  .+++.++..+..
T Consensus       273 ~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~  352 (679)
T 4e6h_A          273 KGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANY  352 (679)
T ss_dssp             TTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence               110                   0 111111222211 111  1100 0123456789999875  589999999999


Q ss_pred             HHcCCCchhcHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC-----------Ch---
Q 005877          362 YYKGIGVKRDVKLAC-KYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-----------PW---  424 (672)
Q Consensus       362 y~~g~g~~~~~~~A~-~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~---  424 (672)
                      ...    .++.++|. ..|++|+...  +...+..++.+.+.    .++.++|...|+++++..           |.   
T Consensus       353 ~~~----~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~----~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~  424 (679)
T 4e6h_A          353 QGE----KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL----NTKIPEIETTILSCIDRIHLDLAALMEDDPTNES  424 (679)
T ss_dssp             HHH----HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHh----cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence            888    77888997 9999998843  45566777788876    789999999999998742           21   


Q ss_pred             --------h--HHHHHHHHHHhcCCHHHHHHHHHHHHHc-C--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHH
Q 005877          425 --------S--SLSRWALESYLKGDVGKAFLLYSRMAEL-G--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCA  491 (672)
Q Consensus       425 --------~--a~~~lg~~~~~~g~~~~A~~~~~~a~~~-g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A  491 (672)
                              .  .+...+......|+.+.|...|.+|++. .  ........|.+-.+.               .++.++|
T Consensus       425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~---------------~~d~e~A  489 (679)
T 4e6h_A          425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI---------------SKDTKTA  489 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT---------------TSCCHHH
T ss_pred             hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh---------------CCCHHHH
Confidence                    1  2333444445678999999999999876 3  233333444443321               2347899


Q ss_pred             HHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHcCCCCCCCHHHHHH
Q 005877          492 HSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSN----AQAMFNLGYMHEHGQGLPLDLHLAKR  565 (672)
Q Consensus       492 ~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~  565 (672)
                      .++|+++++  +.++..+..++.+..    ..++.++|..+|++|+....    ...++..=.-++.   .-|+.+.+..
T Consensus       490 r~ife~~Lk~~p~~~~~w~~y~~fe~----~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~---~~G~~~~~~~  562 (679)
T 4e6h_A          490 CKVLELGLKYFATDGEYINKYLDFLI----YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES---KVGSLNSVRT  562 (679)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH---HTCCSHHHHH
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHH----hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---HcCCHHHHHH
Confidence            999998766  456777777888776    67899999999999998533    3334433333443   2578999999


Q ss_pred             HHHHHHhcCCCCc
Q 005877          566 YYDQALEVDPAAK  578 (672)
Q Consensus       566 ~~~~A~~~~~~~~  578 (672)
                      .++++.+..|+..
T Consensus       563 v~~R~~~~~P~~~  575 (679)
T 4e6h_A          563 LEKRFFEKFPEVN  575 (679)
T ss_dssp             HHHHHHHHSTTCC
T ss_pred             HHHHHHHhCCCCc
Confidence            9999999998853

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.74  E-value=1.4e-08  Score=109.43  Aligned_cols=137  Identities=13%  Similarity=0.064  Sum_probs=82.2

Q ss_pred             hhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC---------------HHHHHHH
Q 005877          106 RVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN---------------IQSKMAV  166 (672)
Q Consensus       106 ~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~---------------~~a~~~L  166 (672)
                      +++++|+..|+++  ..+.++.++..+|..|..    .+++++|+.+|++|+.  +.+               ..+++++
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl  323 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFK----GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL  323 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHH
Confidence            3445555555552  233556667777777776    6677777777777665  344               4555666


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHH
Q 005877          167 AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMY  246 (672)
Q Consensus       167 g~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~  246 (672)
                      |.+|...+++++|+.+|+++++.                                                ++.++.+++
T Consensus       324 a~~~~~~g~~~~A~~~~~~al~~------------------------------------------------~p~~~~a~~  355 (457)
T 1kt0_A          324 AMCYLKLREYTKAVECCDKALGL------------------------------------------------DSANEKGLY  355 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH------------------------------------------------STTCHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhc------------------------------------------------CCccHHHHH
Confidence            66666666666666666655442                                                234566677


Q ss_pred             HHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHH
Q 005877          247 KIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKAL  303 (672)
Q Consensus       247 ~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~  303 (672)
                      .+|.+|...     +++++|+.+|+++++.  +++.++..++.++..    .++++++.
T Consensus       356 ~~g~a~~~~-----g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~----~~~~~~a~  405 (457)
T 1kt0_A          356 RRGEAQLLM-----NEFESAKGDFEKVLEVNPQNKAARLQISMCQKK----AKEHNERD  405 (457)
T ss_dssp             HHHHHHHHT-----TCHHHHHHHHHHHHTTC----CHHHHHHHHHHH----HHHHHHHH
T ss_pred             HHHHHHHHc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHHHHHHH
Confidence            777777666     3777777777777653  456666667776666    56655554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.74  E-value=2.8e-07  Score=77.75  Aligned_cols=110  Identities=13%  Similarity=-0.035  Sum_probs=83.0

Q ss_pred             ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCC
Q 005877          123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS  200 (672)
Q Consensus       123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~  200 (672)
                      .+.+++.+|.++..    .+++++|+.+|++++.  ++++.++..+|.++...+++++|+.+++++++.           
T Consensus         3 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------   67 (118)
T 1elw_A            3 QVNELKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----------   67 (118)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred             hHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------
Confidence            35677788888887    7888888888888765  577888888888888888888888888887653           


Q ss_pred             CcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CC
Q 005877          201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE  278 (672)
Q Consensus       201 ~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~  278 (672)
                                                           .+.++.+++.+|.++...     +++++|+.+|+++++.  ++
T Consensus        68 -------------------------------------~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           68 -------------------------------------KPDWGKGYSRKAAALEFL-----NRFEEAKRTYEEGLKHEANN  105 (118)
T ss_dssp             -------------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCTTC
T ss_pred             -------------------------------------CcccHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHcCCCC
Confidence                                                 234667777888887776     3888888888887764  56


Q ss_pred             HHHHHHHHHHH
Q 005877          279 PQSMEFLGEIY  289 (672)
Q Consensus       279 ~~a~~~Lg~~y  289 (672)
                      +.+...++.+.
T Consensus       106 ~~~~~~l~~~~  116 (118)
T 1elw_A          106 PQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            67777766654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.74  E-value=5.1e-08  Score=87.02  Aligned_cols=111  Identities=11%  Similarity=0.012  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCH
Q 005877          425 SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNE  504 (672)
Q Consensus       425 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  504 (672)
                      ..+.+.|..++..|++++|+..|++|++.......                         .    +++.     ..+.++
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~-------------------------~----~a~~-----~~~~~a   57 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP-------------------------E----EAFD-----HAGFDA   57 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT-------------------------T----SCCC-----HHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcc-------------------------h----hhhh-----hccchH
Confidence            45677888899999999999999999775422000                         0    0000     011124


Q ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---------CCHHHH----HHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 005877          505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ---------SNAQAM----FNLGYMHEHGQGLPLDLHLAKRYYDQAL  571 (672)
Q Consensus       505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~a~----~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  571 (672)
                      .+++++|.++.    ..+++++|+.+|.+|++.         +++.++    +++|.++..    .+++++|+..|++|+
T Consensus        58 ~a~~n~g~al~----~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           58 FCHAGLAEALA----GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHH
Confidence            48889999999    889999999999999755         678899    999999988    899999999999999


Q ss_pred             hcCCCC
Q 005877          572 EVDPAA  577 (672)
Q Consensus       572 ~~~~~~  577 (672)
                      +++|+.
T Consensus       130 el~p~d  135 (159)
T 2hr2_A          130 EMIEER  135 (159)
T ss_dssp             HHHHHC
T ss_pred             hcCCCc
Confidence            998764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.74  E-value=3.5e-07  Score=77.91  Aligned_cols=61  Identities=25%  Similarity=0.274  Sum_probs=36.3

Q ss_pred             hHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877          124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE  188 (672)
Q Consensus       124 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~  188 (672)
                      +.+++.+|.+|..    .+++++|+.+|++++.  ++++.++..+|.++...+++++|+.+|+++++
T Consensus         9 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   71 (125)
T 1na0_A            9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (125)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4555566666655    5566666666666554  34556666666666666666666666655544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.72  E-value=1.1e-07  Score=86.46  Aligned_cols=119  Identities=17%  Similarity=0.156  Sum_probs=92.3

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC
Q 005877          424 WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN  503 (672)
Q Consensus       424 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~  503 (672)
                      ...+...|..++..|++++|+..|.++++.-.....        .           ..   ..+.+      .....+.+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~--------~-----------~~---~~~~~------~~~~~~~~   62 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL--------R-----------EK---PGEPE------WVELDRKN   62 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--------T-----------SC---TTSHH------HHHHHHTH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc--------c-----------CC---CCHHH------HHHHHHHH
Confidence            346778899999999999999999999775111000        0           00   00000      01234566


Q ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ..+++++|.+|.    ..+++++|+.+++++++  +.++.+++++|.+|..    .|++++|+.+|++|++++|+..
T Consensus        63 ~~~~~nla~~~~----~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           63 IPLYANMSQCYL----NIGDLHEAEETSSEVLKREETNEKALFRRAKARIA----AWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHH----hcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCCCH
Confidence            788999999999    89999999999999977  4789999999999988    8999999999999999999864

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.71  E-value=1.7e-05  Score=80.34  Aligned_cols=226  Identities=8%  Similarity=-0.034  Sum_probs=174.9

Q ss_pred             ccCCh-HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCc-----ccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc
Q 005877          222 SRGED-DEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGL-----RRDRTKALMWFSKAAD--KGEPQSMEFLGEIYAR  291 (672)
Q Consensus       222 ~~g~~-~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~~~-----~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~  291 (672)
                      ..|++ ++|+..+.+++..  .+..+...-+.++...+...     ...+++++.++.+++.  +.+..+++.-+.++..
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~  120 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  120 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence            34444 4799999998655  58999999998887653110     0127889999999987  4789999999999987


Q ss_pred             CCCCcC--CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCC-HHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 005877          292 GAGVER--NYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKN-YTKAKEYFEKAADN--EEAGGHYNLGVMYYK  364 (672)
Q Consensus       292 g~g~~~--~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~-~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  364 (672)
                          .+  ++++++.++.++++.+  +..+++.-+.+...     .+. ++++++++.++++.  .+..|+.+.+.+...
T Consensus       121 ----l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-----l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~  191 (331)
T 3dss_A          121 ----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  191 (331)
T ss_dssp             ----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             ----cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence                45  5899999999999864  88899988888875     234 68999999999886  589999999988765


Q ss_pred             CC----------CchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCcc-------CCHHHHHHHHHHHHHcCChh
Q 005877          365 GI----------GVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLK-------KNLHMATALYKLVAERGPWS  425 (672)
Q Consensus       365 g~----------g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~-------~~~~~A~~~~~~a~~~~~~~  425 (672)
                      -.          ...+.++++++++.+++.  +++..+++++..++..+.|..       +-+++++++++++++..|..
T Consensus       192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~  271 (331)
T 3dss_A          192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN  271 (331)
T ss_dssp             HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence            10          012678999999999986  668999999988888865532       45889999999999999876


Q ss_pred             HHHHHHHHHH-----hcCCHHHHHHHHHHHHHcCCH
Q 005877          426 SLSRWALESY-----LKGDVGKAFLLYSRMAELGYE  456 (672)
Q Consensus       426 a~~~lg~~~~-----~~g~~~~A~~~~~~a~~~g~~  456 (672)
                      .+..++.+.+     ..|..++...++.+..+.+..
T Consensus       272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~  307 (331)
T 3dss_A          272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  307 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred             chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence            6555554432     357788999999999877643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.71  E-value=8.4e-08  Score=82.64  Aligned_cols=96  Identities=15%  Similarity=0.089  Sum_probs=84.1

Q ss_pred             CchHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHH
Q 005877           86 NGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQ  161 (672)
Q Consensus        86 ~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~  161 (672)
                      ...+.+|..++.       .+++++|+..|+++  .+++++.+++.+|.+|..    .+++++|+.+|++++.  ++++.
T Consensus        18 ~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~   86 (121)
T 1hxi_A           18 ENPMEEGLSMLK-------LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIA   86 (121)
T ss_dssp             SCHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH
Confidence            457888888775       58999999999995  467899999999999999    9999999999999987  78999


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877          162 SKMAVAYTYLRQDMHDKAVKLYAELAEIAVN  192 (672)
Q Consensus       162 a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~  192 (672)
                      +++.||.+|...|++++|+.+|+++++..|.
T Consensus        87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           87 VHAALAVSHTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            9999999999999999999999999886553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.70  E-value=5.5e-07  Score=77.42  Aligned_cols=109  Identities=18%  Similarity=0.074  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL  427 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~  427 (672)
                      +.+++.+|.++..    .+++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+.+++++++..+  +.++
T Consensus        12 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A           12 AERLKTEGNEQMK----VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK----LGNYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hhchHHHHHHHHHHHhcCccCHHHH
Confidence            3445555656555    55666666666665542  345556666666655    5666666666666655542  3455


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK  468 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~  468 (672)
                      ..+|.++...|++++|+.+|+++++.  ++..+..+++.++..
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            56666666666666666666666544  355556666665544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.69  E-value=1.6e-07  Score=81.19  Aligned_cols=66  Identities=20%  Similarity=0.337  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN---AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      .+++.+|.+|+    ..+++++|+.+|+++++.  ++   +.+++++|.+|..    .|++++|+.+|+++++..|+..
T Consensus        40 ~~~~~lg~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~  110 (129)
T 2xev_A           40 NALYWLGESYY----ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG----EGKNTEAQQTLQQVATQYPGSD  110 (129)
T ss_dssp             HHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHHHHHHH----HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCh
Confidence            67889999999    889999999999999873  56   8899999999987    8999999999999999988764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.69  E-value=3.8e-07  Score=76.86  Aligned_cols=106  Identities=10%  Similarity=-0.021  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL  427 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~  427 (672)
                      +.+++.+|.++..    .+++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+.+++++++..+  +.++
T Consensus         4 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~   75 (118)
T 1elw_A            4 VNELKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLKPDWGKGY   75 (118)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCcccHHHH
Confidence            4455666666666    66666666666666553  355666666666665    6666666666666666553  3456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI  465 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~  465 (672)
                      ..+|.++...|++++|+.+|+++++.  +++.+...++.+
T Consensus        76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            66666666677777777777766554  345555554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.68  E-value=6.8e-07  Score=76.09  Aligned_cols=108  Identities=26%  Similarity=0.377  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHH
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL  427 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~  427 (672)
                      +.+++.+|.++..    .+++++|+.+|+++++.  .+..+++.+|.++..    .+++++|+.+++++++..+  +.++
T Consensus         9 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A            9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHH
Confidence            4556666666666    66777777777766653  355666677776665    6677777777777766543  4456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 005877          428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILD  467 (672)
Q Consensus       428 ~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~  467 (672)
                      ..+|.++...|++++|+.+++++++.  .++.+..+++.++.
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            66777777777777777777777554  45666666666554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.67  E-value=2.1e-07  Score=77.72  Aligned_cols=100  Identities=15%  Similarity=0.062  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC
Q 005877          424 WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN  503 (672)
Q Consensus       424 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~  503 (672)
                      +.++..+|..+...|++++|+.+|+++++.                                              .+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------------------------------------------~~~~   39 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL----------------------------------------------DPEE   39 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH----------------------------------------------CCCC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----------------------------------------------CcCC
Confidence            445566677777777777777777666553                                              2445


Q ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--C--CHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHhcCCCC
Q 005877          504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--S--NAQAMFNLGYMHEHGQGLP-LDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~--~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~~~~~  577 (672)
                      +.+++++|.+|.    ..+++++|+.+|+++++.  .  ++.+++++|.+|..    . +++++|+++++++++..|..
T Consensus        40 ~~~~~~~a~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           40 SKYWLMKGKALY----NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY----IEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT----CSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHH----HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH----HhCCHHHHHHHHHHHhhcccCC
Confidence            667778888888    788999999999998874  5  78899999999877    7 89999999999999888764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.67  E-value=1.5e-06  Score=86.83  Aligned_cols=212  Identities=12%  Similarity=0.038  Sum_probs=109.0

Q ss_pred             hccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc---cC-HHH------------HHHHHHHHHHc--CCHHHH
Q 005877          221 KSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR---RD-RTK------------ALMWFSKAADK--GEPQSM  282 (672)
Q Consensus       221 ~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~---~~-~~~------------A~~~~~~a~~~--~~~~a~  282 (672)
                      +-.|+|.++|....+..........+.+.+.|...+..-.   .. ..+            |+..|++.++.  ....+.
T Consensus        24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~~a~~~l~~l~~~~~~~~~~~  103 (310)
T 3mv2_B           24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLLKDKQNSPYEL  103 (310)
T ss_dssp             HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTTTCCHHHHHTTTTSCCCHHHH
T ss_pred             HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcccHHHHHHHHHhcCCCCcHHH
Confidence            4567777777754433222334444545555554431100   00 111            23334433332  344555


Q ss_pred             HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCC------H
Q 005877          283 EFLGEIYARGAGVERNYTKALEWLTHAARQ----QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE------A  352 (672)
Q Consensus       283 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~------~  352 (672)
                      +.+|.++..    .+++++|++++.++++.    ++.++...+..++..     .++.++|.+.+++..+...      .
T Consensus       104 ~~la~i~~~----~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-----~~r~d~A~k~l~~~~~~~~d~~~~~d  174 (310)
T 3mv2_B          104 YLLATAQAI----LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-----NNNVSTASTIFDNYTNAIEDTVSGDN  174 (310)
T ss_dssp             HHHHHHHHH----HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCccccccch
Confidence            666666666    66666666666666554    245556666666664     4566666666666554433      3


Q ss_pred             HHHHHHHHH--HHc-CCCchhcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHH-----
Q 005877          353 GGHYNLGVM--YYK-GIGVKRDVKLACKYFLVAANAGH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE-----  420 (672)
Q Consensus       353 ~a~~~Lg~~--y~~-g~g~~~~~~~A~~~~~~A~~~~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~-----  420 (672)
                      .....|+..  ... |   .+++.+|+..|+++.+..+    ....++   ++..    .+++++|...++++.+     
T Consensus       175 ~~l~~Laea~v~l~~g---~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~----~g~~~eAe~~L~~l~~~~p~~  244 (310)
T 3mv2_B          175 EMILNLAESYIKFATN---KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ----QRNIAEAQGIVELLLSDYYSV  244 (310)
T ss_dssp             HHHHHHHHHHHHHHHT---CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH----HTCHHHHHHHHHHHHSHHHHT
T ss_pred             HHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH----cCCHHHHHHHHHHHHHhcccc
Confidence            344444433  221 1   2356666666666655432    222222   4444    5666666666665443     


Q ss_pred             -------cCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          421 -------RGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       421 -------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                             ..++.++.++....+..|+  +|.++++++.+.
T Consensus       245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence                   2244555555555555565  566666666544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.66  E-value=5.3e-08  Score=100.42  Aligned_cols=151  Identities=15%  Similarity=0.039  Sum_probs=84.7

Q ss_pred             CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005877          387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWIL  466 (672)
Q Consensus       387 ~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l  466 (672)
                      ....++.+|..+..    .+++++|+.+|+++++..+....      +...|++.++...+.       ..+++|+|.++
T Consensus       178 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~------~~~~~~~~~~~~~l~-------~~~~~nla~~~  240 (338)
T 2if4_A          178 AADRRKMDGNSLFK----EEKLEEAMQQYEMAIAYMGDDFM------FQLYGKYQDMALAVK-------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHHHTCS----SSCCHHHHHHHHHHHHHSCHHHH------HTCCHHHHHHHHHHH-------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhccchh------hhhcccHHHHHHHHH-------HHHHHHHHHHH
Confidence            46778888888876    88889999999888887765442      223344444443332       23778888888


Q ss_pred             HHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHH
Q 005877          467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQA  542 (672)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a  542 (672)
                      .+                .+++++|+.+++++++  +.++.+++++|.+|.    ..+++++|+.+|+++++  ++++.+
T Consensus       241 ~~----------------~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~----~~g~~~~A~~~l~~al~l~p~~~~a  300 (338)
T 2if4_A          241 IK----------------LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA----ELGQMDSARDDFRKAQKYAPDDKAI  300 (338)
T ss_dssp             HT----------------TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----TTTCHHHHHHHHHHTTC--------
T ss_pred             HH----------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHCCCCHHH
Confidence            77                6778899999988754  567888999999998    88899999999999865  467888


Q ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          543 MFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       543 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      +.+|+.+...   ..+..+++...|++++...|+.
T Consensus       301 ~~~L~~l~~~---~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          301 RRELRALAEQ---EKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             -----------------------------------
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHhhCCCCCC
Confidence            8888887543   2567788888899888887764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.65  E-value=1.6e-07  Score=83.87  Aligned_cols=95  Identities=13%  Similarity=-0.065  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHcCCCccCCHHHHHHHHHH
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH--------------QKAFYQLAKMFHTGVGLKKNLHMATALYKL  417 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--------------~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~  417 (672)
                      +..+.++|..+..    .+++++|+..|++|++..+              ..++.++|.++..    .+++++|+..|++
T Consensus        11 a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~----Lgr~~eAl~~~~k   82 (159)
T 2hr2_A           11 AYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRSFDEALHSADK   82 (159)
T ss_dssp             HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence            4556677777777    7888888888888876332              2388899988887    8899999999999


Q ss_pred             HHHc-------CC--hhHH----HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          418 VAER-------GP--WSSL----SRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       418 a~~~-------~~--~~a~----~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      +++.       .|  ..++    +++|.++...|++++|+..|+++++..
T Consensus        83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~  132 (159)
T 2hr2_A           83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  132 (159)
T ss_dssp             HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            9888       65  4467    999999999999999999999997763

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.65  E-value=3.8e-07  Score=78.56  Aligned_cols=67  Identities=19%  Similarity=0.220  Sum_probs=52.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877          502 GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN-------AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE  572 (672)
Q Consensus       502 ~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~-------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  572 (672)
                      .++.+++++|.+|.    ..+++++|+.+++++++.  .+       +.+++++|.+|..    .+++++|+++|+++++
T Consensus        36 ~~~~~~~~la~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           36 TNMTYITNQAAVYF----EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK----EEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             TCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH----HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHH
Confidence            44566777888887    778888888888888664  33       7788888888877    7888888888888888


Q ss_pred             cCCC
Q 005877          573 VDPA  576 (672)
Q Consensus       573 ~~~~  576 (672)
                      .+|+
T Consensus       108 ~~~~  111 (131)
T 1elr_A          108 EHRT  111 (131)
T ss_dssp             HCCC
T ss_pred             hCCC
Confidence            8775

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.65  E-value=2.3e-06  Score=87.18  Aligned_cols=222  Identities=9%  Similarity=-0.105  Sum_probs=161.9

Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchh-cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccC-CH
Q 005877          335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR-DVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKK-NL  408 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~-~~  408 (672)
                      ..++|++++.++++.  ++..+++.-+.+...    .+ ++++++.++.+++..  .+..+++.-+.++...   .+ ++
T Consensus        69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~----l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l---~~~~~  141 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTS----LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI---SPQDP  141 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH---CCSCC
T ss_pred             CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---cCCCh
Confidence            446788888888876  478888888888877    55 689999999998874  4788888888888762   14 77


Q ss_pred             HHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHH--------HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCccc
Q 005877          409 HMATALYKLVAERGP--WSSLSRWALESYLKGDVG--------KAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCM  476 (672)
Q Consensus       409 ~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~--------~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~  476 (672)
                      ++++.++.++++..+  ..++...+.+....|.++        +++.++.++++.  .+..|+++.++++.+.+.     
T Consensus       142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~-----  216 (349)
T 3q7a_A          142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG-----  216 (349)
T ss_dssp             HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT-----
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc-----
Confidence            899999999998874  557777777776666665        999999999776  499999999999877432     


Q ss_pred             CCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCC----------------CHHHHHHHHHHHHh--
Q 005877          477 GESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQR----------------DYERAAEAYMHARS--  536 (672)
Q Consensus       477 ~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~----------------d~~~A~~~~~~A~~--  536 (672)
                          ...+...++++++++++++  .++|..+++.+..++..+.-...                ....-.......+.  
T Consensus       217 ----~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (349)
T 3q7a_A          217 ----AETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP  292 (349)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred             ----cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence                1123556899999999875  66789999998888874321100                11222222222211  


Q ss_pred             ------cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-hcCCC
Q 005877          537 ------QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQAL-EVDPA  576 (672)
Q Consensus       537 ------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~~~~  576 (672)
                            ..++.++..|+.+|..    .++..+|.+.++... +.||.
T Consensus       293 ~~~~~~~~s~~al~~l~d~~~~----~~~~~~a~~~~~~l~~~~dpi  335 (349)
T 3q7a_A          293 LPEDTPLPVPLALEYLADSFIE----QNRVDDAAKVFEKLSSEYDQM  335 (349)
T ss_dssp             CCSSCCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCGG
T ss_pred             cccccCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhhChH
Confidence                  2578899999999987    578899999999986 45665

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.64  E-value=3e-07  Score=80.44  Aligned_cols=100  Identities=13%  Similarity=-0.001  Sum_probs=89.9

Q ss_pred             CCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--C
Q 005877           82 PGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--G  157 (672)
Q Consensus        82 ~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~  157 (672)
                      +..+..++.+|..++.       .+++++|+..|+++.  ++.++.+++.+|.+|..    .+++++|+.++++++.  +
T Consensus         6 ~~~~~~~~~~g~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p   74 (137)
T 3q49_B            6 SPSAQELKEQGNRLFV-------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDG   74 (137)
T ss_dssp             CCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCT
T ss_pred             cccHHHHHHHHHHHHH-------hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCc
Confidence            4456778888888875       689999999999954  56889999999999999    9999999999999986  7


Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877          158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN  192 (672)
Q Consensus       158 ~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~  192 (672)
                      +++.+++.+|.+|...|++++|+.+|+++++..+.
T Consensus        75 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            89999999999999999999999999999998765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.63  E-value=4.6e-07  Score=79.21  Aligned_cols=96  Identities=13%  Similarity=-0.064  Sum_probs=69.8

Q ss_pred             CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hh
Q 005877          350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS  425 (672)
Q Consensus       350 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~  425 (672)
                      .++.+++.+|.++..    .+++++|+.+|+++++.  .++.+++++|.++..    .+++++|+.+|+++++..+  +.
T Consensus         7 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~   78 (137)
T 3q49_B            7 PSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSVK   78 (137)
T ss_dssp             CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCchhHH
Confidence            356677777777777    77777777777777663  356777777777776    7777777777777777663  45


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          426 SLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      +++.+|.++...|++++|+..|+++++.
T Consensus        79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           79 AHFFLGQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            6777777777778888888888777654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.63  E-value=4.1e-07  Score=82.56  Aligned_cols=76  Identities=13%  Similarity=0.029  Sum_probs=53.0

Q ss_pred             CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CH-HHHHH
Q 005877          387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YE-VAQSN  461 (672)
Q Consensus       387 ~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~-~a~~n  461 (672)
                      ...+++++|.+|..    .+++++|+.+++++++..|  +.+++.+|.++...|++++|+..|+++++..  ++ .....
T Consensus        62 ~~~~~~nla~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~  137 (162)
T 3rkv_A           62 NIPLYANMSQCYLN----IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVARE  137 (162)
T ss_dssp             HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            44677777777776    7778888888888777763  5567778888888888888888888876553  44 33444


Q ss_pred             HHHHH
Q 005877          462 AAWIL  466 (672)
Q Consensus       462 la~~l  466 (672)
                      ++.+.
T Consensus       138 l~~~~  142 (162)
T 3rkv_A          138 MKIVT  142 (162)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=8.5e-07  Score=78.39  Aligned_cols=62  Identities=16%  Similarity=-0.119  Sum_probs=34.9

Q ss_pred             ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877          123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GN---IQSKMAVAYTYLRQDMHDKAVKLYAELAE  188 (672)
Q Consensus       123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~---~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~  188 (672)
                      ++..++.+|..+..    .+++++|+.+|+++++.  ++   ..++..+|.+|...+++++|+.+|+++++
T Consensus        27 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   93 (148)
T 2dba_A           27 SVEQLRKEGNELFK----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE   93 (148)
T ss_dssp             CHHHHHHHHHHHHT----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            34455555555555    55666666666665552  22   45555666666666666666666655544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.63  E-value=3e-06  Score=86.30  Aligned_cols=243  Identities=11%  Similarity=0.016  Sum_probs=154.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHH
Q 005877          262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKA  339 (672)
Q Consensus       262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A  339 (672)
                      ++..+..+++..++.+                   ...++|+.++.++++.  .+..+.+.-+.+....    ..+++++
T Consensus        52 ~y~~~~~~~r~~~~~~-------------------e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l----~~~l~eE  108 (349)
T 3q7a_A           52 EYKDAMDYFRAIAAKE-------------------EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSL----NKSLEDE  108 (349)
T ss_dssp             HHHHHHHHHHHHHHTT-------------------CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCCHHHH
T ss_pred             HHHHHHHHHHHHHHhC-------------------CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHh----hhhHHHH
Confidence            5666666666554432                   2345677777777765  3667777777766641    1157778


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCCch-h-cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHH----
Q 005877          340 KEYFEKAADN--EEAGGHYNLGVMYYKGIGVK-R-DVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLH----  409 (672)
Q Consensus       340 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~-~-~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~----  409 (672)
                      +.++.+++..  .+..++++.+.+...    . + ++++++.++.++++..  +..++++-+.+...    .+.++    
T Consensus       109 L~~~~~~L~~nPKny~aW~hR~wlL~~----l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~----l~~~~~~~~  180 (349)
T 3q7a_A          109 LRLMNEFAVQNLKSYQVWHHRLLLLDR----ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH----FSTLGRISE  180 (349)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHH----HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH----HHHTTCCCH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHH----hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccccccch
Confidence            8888777765  377777777777766    4 4 6677778887777643  56777777766654    33333    


Q ss_pred             ----HHHHHHHHHHHcC--ChhHHHHHHHHHHhcCC-------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCc
Q 005877          410 ----MATALYKLVAERG--PWSSLSRWALESYLKGD-------VGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSM  474 (672)
Q Consensus       410 ----~A~~~~~~a~~~~--~~~a~~~lg~~~~~~g~-------~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~  474 (672)
                          +++++++++++..  +..++...+.+....+.       +++++.++.+++..  ++..+++++..++.+.+....
T Consensus       181 ~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~  260 (349)
T 3q7a_A          181 AQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV  260 (349)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc
Confidence                7888888888776  45677788888777775       68889999888644  688999999998887554300


Q ss_pred             --------ccCCCCCCCchHhHHHHHHHHHH----HHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 005877          475 --------CMGESGFCTDAERHQCAHSLWWQ----ASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSN  539 (672)
Q Consensus       475 --------~~~~~~~~~~~~~~~~A~~~~~~----a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~  539 (672)
                              +.+........+-.+.++.+...    ......+.++..|+++|.    .+++.++|.+.++...+.-+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~----~~~~~~~a~~~~~~l~~~~d  333 (349)
T 3q7a_A          261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFI----EQNRVDDAAKVFEKLSSEYD  333 (349)
T ss_dssp             GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhhC
Confidence                    00000000000001111111111    011345788899999999    66899999999999875533

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.62  E-value=6.5e-07  Score=77.03  Aligned_cols=106  Identities=16%  Similarity=0.109  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-------
Q 005877          353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-------  423 (672)
Q Consensus       353 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------  423 (672)
                      .+++.+|.++..    .+++++|+.+|+++++.  .++.+++++|.++..    .+++++|+.+|+++++..+       
T Consensus         5 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            5 LKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhccccchhHH
Confidence            445555555555    55666666666665543  245555566666555    5566666666666655432       


Q ss_pred             --hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 005877          424 --WSSLSRWALESYLKGDVGKAFLLYSRMAELG-YEVAQSNAAWIL  466 (672)
Q Consensus       424 --~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g-~~~a~~nla~~l  466 (672)
                        +.+++.+|.++...|++++|+.+|+++++.. ++.....++.+.
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  122 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence              3455666666666777777777777666553 344444444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.61  E-value=3.6e-07  Score=78.98  Aligned_cols=96  Identities=13%  Similarity=0.021  Sum_probs=84.6

Q ss_pred             cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCCh---HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--C
Q 005877           85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDP---HARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--G  157 (672)
Q Consensus        85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~--~~~~---~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~  157 (672)
                      +.+++.+|..++.       .+++++|+..|+++..  ++++   .+++.+|.+|..    .+++++|+.+|++++.  +
T Consensus         2 ~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~~~~~~p   70 (129)
T 2xev_A            2 ARTAYNVAFDALK-------NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAEAQFRDLVSRYP   70 (129)
T ss_dssp             -CCHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHCC
Confidence            4567888888875       6899999999999654  5676   799999999999    9999999999999987  6


Q ss_pred             CC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 005877          158 GN---IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV  191 (672)
Q Consensus       158 ~~---~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~  191 (672)
                      ++   +.+++.+|.+|...|++++|+.+|+++++..|
T Consensus        71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  107 (129)
T 2xev_A           71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP  107 (129)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            77   89999999999999999999999999988654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=1.2e-06  Score=77.29  Aligned_cols=109  Identities=17%  Similarity=0.018  Sum_probs=72.2

Q ss_pred             CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC-
Q 005877          350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-  423 (672)
Q Consensus       350 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-  423 (672)
                      .++..++.+|..+..    .+++++|+.+|+++++...     ..+++++|.+|..    .+++++|+.+++++++..+ 
T Consensus        26 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~   97 (148)
T 2dba_A           26 SSVEQLRKEGNELFK----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDKAETEASKAIEKDGG   97 (148)
T ss_dssp             CCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhCcc
Confidence            356666677777766    6677777777777766432     5666777777766    6777777777777766653 


Q ss_pred             -hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877          424 -WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL  466 (672)
Q Consensus       424 -~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l  466 (672)
                       +.+++.+|.++...|++++|+.+|+++++.  ++..+...++.+.
T Consensus        98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence             456667777777777777777777777554  3555555555443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.58  E-value=8.5e-07  Score=95.40  Aligned_cols=132  Identities=17%  Similarity=0.188  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CC---------------HHHHHH
Q 005877          297 RNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EE---------------AGGHYN  357 (672)
Q Consensus       297 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~  357 (672)
                      .++++|+..|+++.+.  ..+.++..+|..+..     .+++++|+.+|++|++.  .+               ..++++
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~-----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n  322 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFK-----GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN  322 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence            3444555555554432  345566667777665     55777777777776653  22               344444


Q ss_pred             HHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHH
Q 005877          358 LGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALE  433 (672)
Q Consensus       358 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~  433 (672)
                      +|.+|..    .+++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|+++++..|  ..++..++.+
T Consensus       323 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          323 LAMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred             HHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4444444    44444444444444442  234444444444444    4444444444444444432  2233444444


Q ss_pred             HHhcCCHH
Q 005877          434 SYLKGDVG  441 (672)
Q Consensus       434 ~~~~g~~~  441 (672)
                      +...++++
T Consensus       395 ~~~~~~~~  402 (457)
T 1kt0_A          395 QKKAKEHN  402 (457)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44333333

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.54  E-value=4.7e-07  Score=75.58  Aligned_cols=98  Identities=11%  Similarity=-0.118  Sum_probs=87.4

Q ss_pred             CCCCcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--
Q 005877           81 DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--  156 (672)
Q Consensus        81 ~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--  156 (672)
                      +++++.+++.+|..++.       .+++++|+..|+++.  .+.++.+++.+|.+|..    .+++++|+.++++++.  
T Consensus         2 ~p~~~~~~~~~~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~   70 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYD-------AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAVDCYNYVINVI   70 (112)
T ss_dssp             CCSSTTGGGGHHHHHHS-------SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTS
T ss_pred             CCCcHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence            46678888899998773       689999999999965  45789999999999998    8999999999999987  


Q ss_pred             CC--CHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHH
Q 005877          157 GG--NIQSKMAVAYTYLRQ-DMHDKAVKLYAELAEI  189 (672)
Q Consensus       157 ~~--~~~a~~~Lg~~y~~~-~~~~~A~~~y~~a~~~  189 (672)
                      +.  ++.++..+|.++... |++++|+.+++++++.
T Consensus        71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            56  899999999999999 9999999999998764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.54  E-value=1e-06  Score=91.78  Aligned_cols=127  Identities=14%  Similarity=0.062  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHH
Q 005877          315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQL  394 (672)
Q Consensus       315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L  394 (672)
                      +..+..+|..+..     .+++++|+.+|+++++......         .    ..+.+++..     .......+++++
T Consensus       223 a~~~~~~g~~~~~-----~g~~~~Ai~~y~kAl~~~~~~~---------~----~~~~~~~~~-----~~~~~~~~~~nl  279 (370)
T 1ihg_A          223 SEDLKNIGNTFFK-----SQNWEMAIKKYTKVLRYVEGSR---------A----AAEDADGAK-----LQPVALSCVLNI  279 (370)
T ss_dssp             HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHH---------H----HSCHHHHGG-----GHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHhhcCc---------c----ccChHHHHH-----HHHHHHHHHHHH
Confidence            6667778888775     6688888888888775210000         0    001111100     112245666677


Q ss_pred             HHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 005877          395 AKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK  468 (672)
Q Consensus       395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~  468 (672)
                      |.+|..    .+++++|+.+|+++++..+  +.+++.+|.++...|++++|+.+|+++++.  ++..+..+++.++..
T Consensus       280 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~  353 (370)
T 1ihg_A          280 GACKLK----MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  353 (370)
T ss_dssp             HHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHh----ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            777766    6777777777777776653  456677777777777777777777777554  466666677766655

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.53  E-value=2.9e-08  Score=107.49  Aligned_cols=123  Identities=13%  Similarity=0.046  Sum_probs=72.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHH
Q 005877          430 WALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEH  505 (672)
Q Consensus       430 lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~  505 (672)
                      +|..++..|++++|+.+|+++++.  .+..++.++|.++.+                .+++++|+.+++++++  +.++.
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~----------------~g~~~~A~~~~~~al~l~p~~~~   75 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----------------TECYGYALGDATRAIELDKKYIK   75 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----------------hcCHHHHHHHHHHHHHhCCCCHH
Confidence            333444444555555555554333  234445555555544                4445555555554433  34567


Q ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH--HHcCCCCCCCHHHHHHHHH-----------HH
Q 005877          506 AALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYM--HEHGQGLPLDLHLAKRYYD-----------QA  570 (672)
Q Consensus       506 a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~--y~~g~g~~~d~~~A~~~~~-----------~A  570 (672)
                      +++++|.+|.    ..+++++|+++|++|++.  +++.++.++|.+  +..    .+++++|++.++           ++
T Consensus        76 ~~~~lg~~~~----~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~a  147 (477)
T 1wao_1           76 GYYRRAASNM----ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDEHKRSVVDSLDIES  147 (477)
T ss_dssp             HHHHHHHHHH----HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC------CCSTTTCCTTSS
T ss_pred             HHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhccccccchhHhhhhhhh
Confidence            7778888888    778888888888888663  567777788777  554    577888888888           77


Q ss_pred             HhcCCC
Q 005877          571 LEVDPA  576 (672)
Q Consensus       571 ~~~~~~  576 (672)
                      ++.+|+
T Consensus       148 l~~~~~  153 (477)
T 1wao_1          148 MTIEDE  153 (477)
T ss_dssp             CCCCTT
T ss_pred             cccccc
Confidence            766654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.50  E-value=1.1e-06  Score=91.64  Aligned_cols=107  Identities=15%  Similarity=0.152  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc------------------CCHHHHHHHHHHHHcCCCCCcCCHHHHHH
Q 005877          280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ------------------QLYSAYNGIGYLYVKGYGVEKKNYTKAKE  341 (672)
Q Consensus       280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------------~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~  341 (672)
                      ..+..+|..+..    .+++++|+..|+++++.                  .++.++.++|.+|..     .+++++|+.
T Consensus       224 ~~~~~~g~~~~~----~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-----~g~~~~A~~  294 (370)
T 1ihg_A          224 EDLKNIGNTFFK----SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-----MSDWQGAVD  294 (370)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-----TTCHHHHHH
T ss_pred             HHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-----ccCHHHHHH
Confidence            446667777777    77788888888777752                  123344444444443     334444444


Q ss_pred             HHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 005877          342 YFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFH  399 (672)
Q Consensus       342 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~  399 (672)
                      +++++++.  +++.+++++|.+|..    .+++++|+.+|++|++.  ++..++..++.++.
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~  352 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  352 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44444443  244444444444444    44444444444444432  23444444444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.50  E-value=8e-08  Score=104.01  Aligned_cols=120  Identities=13%  Similarity=0.038  Sum_probs=69.3

Q ss_pred             HHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCccc
Q 005877          127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIE  204 (672)
Q Consensus       127 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~  204 (672)
                      ++.+|..|..    .+++++|+.+|++|++  +.++.++..+|.+|...+++++|+.+|+++++.               
T Consensus         9 ~~~lg~~~~~----~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---------------   69 (477)
T 1wao_1            9 LKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---------------   69 (477)
T ss_dssp             SSSSSSSTTT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---------------
T ss_pred             HHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------------
Confidence            3444445544    5666666666666654  455666666666666666666666666665541               


Q ss_pred             chhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHH
Q 005877          205 PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSM  282 (672)
Q Consensus       205 ~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~  282 (672)
                                                       ++.++.+++.+|.+|...     +++++|+++|+++++.  +++.++
T Consensus        70 ---------------------------------~p~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~al~~~p~~~~~~  111 (477)
T 1wao_1           70 ---------------------------------DKKYIKGYYRRAASNMAL-----GKFRAALRDYETVVKVKPHDKDAK  111 (477)
T ss_dssp             ---------------------------------CTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHSTTCTTHH
T ss_pred             ---------------------------------CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHH
Confidence                                             234556666666666665     3666676666666653  455566


Q ss_pred             HHHHHH--HHcCCCCcCCHHHHHHHHH
Q 005877          283 EFLGEI--YARGAGVERNYTKALEWLT  307 (672)
Q Consensus       283 ~~Lg~~--y~~g~g~~~~~~~A~~~~~  307 (672)
                      ..++.+  +..    .+++++|+..++
T Consensus       112 ~~l~~~~~~~~----~g~~~~A~~~~~  134 (477)
T 1wao_1          112 MKYQECNKIVK----QKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHH----HHHHCCC-----
T ss_pred             HHHHHHHHHHH----HHHHHHHhcccc
Confidence            666665  555    566666666666

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.49  E-value=3.4e-07  Score=94.38  Aligned_cols=147  Identities=10%  Similarity=-0.019  Sum_probs=87.1

Q ss_pred             CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHH
Q 005877          314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQ  393 (672)
Q Consensus       314 ~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~  393 (672)
                      .+..+..+|..+..     .+++++|+.+|+++++......      .+..    .+++.++...+.       ..++++
T Consensus       178 ~a~~~~~~g~~~~~-----~g~~~~A~~~y~~Al~~~p~~~------~~~~----~~~~~~~~~~l~-------~~~~~n  235 (338)
T 2if4_A          178 AADRRKMDGNSLFK-----EEKLEEAMQQYEMAIAYMGDDF------MFQL----YGKYQDMALAVK-------NPCHLN  235 (338)
T ss_dssp             HHHHHHHHHHHTCS-----SSCCHHHHHHHHHHHHHSCHHH------HHTC----CHHHHHHHHHHH-------THHHHH
T ss_pred             HHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHhccch------hhhh----cccHHHHHHHHH-------HHHHHH
Confidence            47788899999975     7799999999999988764433      1223    455555554432       247788


Q ss_pred             HHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHh
Q 005877          394 LAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMA--ELGYEVAQSNAAWILDKY  469 (672)
Q Consensus       394 L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~--~~g~~~a~~nla~~l~~~  469 (672)
                      +|.+|..    .+++++|+.+|+++++..+  ..+++++|.++...|++++|+.+|++++  ++++..++.+++.+....
T Consensus       236 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~  311 (338)
T 2if4_A          236 IAACLIK----LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE  311 (338)
T ss_dssp             HHHHHHT----TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            9999887    8899999999999988774  5678899999999999999999999985  445777777777664331


Q ss_pred             CCCCcccCCCCCCCchHhHHHHHHHHHHHHhC
Q 005877          470 GEGSMCMGESGFCTDAERHQCAHSLWWQASEQ  501 (672)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  501 (672)
                                     .+..+++..+|+++...
T Consensus       312 ---------------~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          312 ---------------KALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             --------------------------------
T ss_pred             ---------------HHHHHHHHHHHHHhhCC
Confidence                           33455666666665443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.46  E-value=2e-07  Score=79.49  Aligned_cols=86  Identities=9%  Similarity=0.045  Sum_probs=74.2

Q ss_pred             hHhHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCC
Q 005877          485 AERHQCAHSLWWQASEQG-----NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLP  557 (672)
Q Consensus       485 ~~~~~~A~~~~~~a~~~~-----~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~  557 (672)
                      .+++++|+.+|+++++.+     ++.+++++|.+|.    ..+++++|+.+|+++++  ++++.+++++|.+|..    .
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~   74 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR----TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN----L   74 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----H
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----c
Confidence            567889999999998763     3678899999999    89999999999999987  4789999999999988    8


Q ss_pred             CCHHHHHHHHHHHHhcCCCCc
Q 005877          558 LDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       558 ~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      |++++|+.+++++++..|+..
T Consensus        75 g~~~~A~~~~~~al~~~p~~~   95 (117)
T 3k9i_A           75 GRYEQGVELLLKIIAETSDDE   95 (117)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCH
T ss_pred             CCHHHHHHHHHHHHHhCCCcH
Confidence            999999999999999987753

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.45  E-value=2.3e-07  Score=79.16  Aligned_cols=84  Identities=12%  Similarity=0.018  Sum_probs=73.3

Q ss_pred             hhhHHHHHHHHHHHHhC-----CChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHH
Q 005877          105 VRVMEEATSEVESAAME-----GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHD  177 (672)
Q Consensus       105 ~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~  177 (672)
                      .|++++|+..|+++...     .++.+++.||.+|..    .+++++|+.+|+++++  ++++.+++.+|.++...|+++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~   78 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE   78 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH
Confidence            57889999999997654     567899999999999    9999999999999987  789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 005877          178 KAVKLYAELAEIAVN  192 (672)
Q Consensus       178 ~A~~~y~~a~~~~~~  192 (672)
                      +|+.+|+++++..+.
T Consensus        79 ~A~~~~~~al~~~p~   93 (117)
T 3k9i_A           79 QGVELLLKIIAETSD   93 (117)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999987643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.44  E-value=8.6e-06  Score=89.70  Aligned_cols=172  Identities=7%  Similarity=-0.091  Sum_probs=137.2

Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhc----------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 005877          335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD----------VKLACKYFLVAANA--GHQKAFYQLAKMFHT  400 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~----------~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~  400 (672)
                      -.++|++++.++++.  ++..++++-+.++..    .++          +++++.++.++++.  .+..++++-+.++..
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh----cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            447888999998876  478888888888877    555          99999999999874  578999999999987


Q ss_pred             CCCccC--CHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCC
Q 005877          401 GVGLKK--NLHMATALYKLVAERGP--WSSLSRWALESYLKG-DVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGS  473 (672)
Q Consensus       401 g~g~~~--~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~  473 (672)
                          .+  +++++++++.++++.++  ..++...+.+....| .+++++.++.++++.  .+..|+++.+.++.+.+...
T Consensus       120 ----l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          120 ----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             ----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred             ----cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence                66  67999999999999984  568888999999999 899999999999766  58999999999998743210


Q ss_pred             cccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHh
Q 005877          474 MCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYY  516 (672)
Q Consensus       474 ~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~  516 (672)
                      -. +.. ...+.+.++++++++.+++  .+++..+++.+++++..
T Consensus       196 ~~-~~~-~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~  238 (567)
T 1dce_A          196 DS-GPQ-GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR  238 (567)
T ss_dssp             CS-SSC-CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             cc-ccc-ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence            00 000 0123578899999999875  56778999999999883

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.39  E-value=6.4e-07  Score=79.73  Aligned_cols=87  Identities=10%  Similarity=0.065  Sum_probs=73.2

Q ss_pred             hhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCc-------ccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcc
Q 005877          105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMM-------RERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQ  173 (672)
Q Consensus       105 ~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g-------~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~  173 (672)
                      .+.+++|+..++++  .+++++++++++|.++.. .+       ..+.+++|+..|++|+.  +++..++++||.+|...
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            46789999999994  567999999999999986 11       01235799999999986  78999999999999987


Q ss_pred             C-----------CHHHHHHHHHHHHHHHHh
Q 005877          174 D-----------MHDKAVKLYAELAEIAVN  192 (672)
Q Consensus       174 ~-----------~~~~A~~~y~~a~~~~~~  192 (672)
                      |           ++++|+.+|+++++++|.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence            4           899999999999998654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.37  E-value=6.6e-06  Score=90.61  Aligned_cols=183  Identities=7%  Similarity=-0.036  Sum_probs=146.5

Q ss_pred             cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCC----------HHHHHHHHHHHHHcCC--hhHHHHHHHHHHh
Q 005877          371 DVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKN----------LHMATALYKLVAERGP--WSSLSRWALESYL  436 (672)
Q Consensus       371 ~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~----------~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~  436 (672)
                      -.++|++.+.++++.  .+..++++-+.++..    .++          +++++.+++++++..|  ..++...+.+...
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh----cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            446889999999874  578999999998876    455          9999999999999985  5688899999999


Q ss_pred             cC--CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhC--CCHHHHHHH
Q 005877          437 KG--DVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEHAALLI  510 (672)
Q Consensus       437 ~g--~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l  510 (672)
                      .+  ++++++..+.++++.+  +..|+++-++++.+.+.               .++++++++.++++.  .+..++++.
T Consensus       120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~---------------~~~~el~~~~~~I~~~p~n~saW~~r  184 (567)
T 1dce_A          120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV---------------APAEELAFTDSLITRNFSNYSSWHYR  184 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC---------------CHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC---------------ChHHHHHHHHHHHHHCCCCccHHHHH
Confidence            99  7799999999998775  89999999999988321               578999999987655  579999999


Q ss_pred             HHHHHhCCC----------CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHH------------HHHH
Q 005877          511 GDAYYYGRG----------TQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHL------------AKRY  566 (672)
Q Consensus       511 G~~y~~g~g----------~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~------------A~~~  566 (672)
                      |.++..-.+          ..+.+++|++++.+|+.  +++..+++++++++..+.    .++.            |+.+
T Consensus       185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~  260 (567)
T 1dce_A          185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE----PHDVLCCVHVSREEACLSVC  260 (567)
T ss_dssp             HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC----CCSCEEEEEEETTTTEEEEE
T ss_pred             HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC----CccceeeeeeccCCceEEEE
Confidence            999875110          12568999999999976  588999999999997742    2222            4455


Q ss_pred             HHHHHhcCCC
Q 005877          567 YDQALEVDPA  576 (672)
Q Consensus       567 ~~~A~~~~~~  576 (672)
                      |++|++.+|.
T Consensus       261 f~~~i~~~~~  270 (567)
T 1dce_A          261 FSRPLTVGSR  270 (567)
T ss_dssp             EEEEECTTBT
T ss_pred             eccceecccc
Confidence            6667666644

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.36  E-value=2.2e-06  Score=76.33  Aligned_cols=103  Identities=14%  Similarity=0.180  Sum_probs=69.5

Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhc----------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 005877          335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD----------VKLACKYFLVAANA--GHQKAFYQLAKMFHT  400 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~----------~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~  400 (672)
                      .+++|+..++++++.  +++++++++|.++..    .++          +++|+..|++|++.  ++..+++++|.+|..
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~----l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLE----LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            567777777777765  477778888877766    443          45888888888764  467888888888865


Q ss_pred             C-CC------ccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          401 G-VG------LKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       401 g-~g------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      - .-      ..+++++|+.+|++|++..|...            .+.++++...++.+.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~------------~y~~al~~~~ka~el  140 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT------------HYLKSLEMTAKAPQL  140 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH------------HHHHHHHHHHTHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHhCHhc
Confidence            0 00      01478888888888888887543            234555555555444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.29  E-value=1.8e-06  Score=71.27  Aligned_cols=70  Identities=14%  Similarity=0.166  Sum_probs=62.6

Q ss_pred             hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          500 EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       500 ~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      +++++.+++.+|.+|+    ..+++++|+.+|+++++  ++++.++++||.+|..    .+++++|+++|++++++.+..
T Consensus         3 ~p~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHL----KHDNASRALALFEELVETDPDYVGTYYHLGKLYER----LDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhhcC
Confidence            5778999999999999    89999999999999987  4789999999999988    899999999999999986543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.22  E-value=5.1e-06  Score=68.46  Aligned_cols=69  Identities=23%  Similarity=0.210  Sum_probs=62.6

Q ss_pred             hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877          120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN  192 (672)
Q Consensus       120 ~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~  192 (672)
                      +++++.+++.+|.+|..    .+++++|+.+|+++++  ++++.+++.||.+|...|++++|+.+|+++++..+.
T Consensus         3 ~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLK----HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            57889999999999998    9999999999999987  788999999999999999999999999999987654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.21  E-value=5.9e-06  Score=69.85  Aligned_cols=80  Identities=14%  Similarity=0.090  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 005877          490 CAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKR  565 (672)
Q Consensus       490 ~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~  565 (672)
                      +|+..++++++  +.++.+++.+|.+|.    ..+++++|+.+|+++++  +.++.++++||.+|..    .|++++|+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~   74 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYA----EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG----QGDRAGARQ   74 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHH----HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----cCCHHHHHH
Confidence            46777887655  567999999999999    89999999999999987  4789999999999987    899999999


Q ss_pred             HHHHHHhcCCCC
Q 005877          566 YYDQALEVDPAA  577 (672)
Q Consensus       566 ~~~~A~~~~~~~  577 (672)
                      +|+++++..|..
T Consensus        75 ~~~~al~~~~~~   86 (115)
T 2kat_A           75 AWESGLAAAQSR   86 (115)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhcccc
Confidence            999999987654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.18  E-value=9.3e-06  Score=64.90  Aligned_cols=62  Identities=24%  Similarity=0.273  Sum_probs=50.6

Q ss_pred             ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877          123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE  188 (672)
Q Consensus       123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~  188 (672)
                      ++.+++.+|.+|..    .+++++|+.+|++++.  ++++.+++.+|.++...+++++|+.+|+++++
T Consensus         8 ~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A            8 SAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            45677888888887    7888888888888876  57788888888888888888888888888766

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.16  E-value=1.2e-06  Score=73.29  Aligned_cols=63  Identities=10%  Similarity=-0.009  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC
Q 005877          352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG  422 (672)
Q Consensus       352 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~  422 (672)
                      +.+++.+|.++..    .+++++|+.+|+++++.  .++.+++++|.++..    .+++++|+.+|+++++..
T Consensus         4 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            4 FEKQKEQGNSLFK----QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence            3455555555555    55556666665555542  345555555555555    555555555555555554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.15  E-value=1.1e-05  Score=68.16  Aligned_cols=79  Identities=15%  Similarity=-0.010  Sum_probs=71.2

Q ss_pred             HHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005877          110 EATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAE  185 (672)
Q Consensus       110 ~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~  185 (672)
                      +|+..|+++.  ++.++.+++.+|.+|..    .+++++|+.+|++++.  +.++.+++.+|.+|...|++++|+.+|++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5778888854  45889999999999998    9999999999999986  68899999999999999999999999999


Q ss_pred             HHHHHHh
Q 005877          186 LAEIAVN  192 (672)
Q Consensus       186 a~~~~~~  192 (672)
                      +++..+.
T Consensus        79 al~~~~~   85 (115)
T 2kat_A           79 GLAAAQS   85 (115)
T ss_dssp             HHHHHHH
T ss_pred             HHHhccc
Confidence            9987654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.06  E-value=3.5e-05  Score=61.44  Aligned_cols=13  Identities=31%  Similarity=0.381  Sum_probs=5.0

Q ss_pred             hcHHHHHHHHHHH
Q 005877          370 RDVKLACKYFLVA  382 (672)
Q Consensus       370 ~~~~~A~~~~~~A  382 (672)
                      +++++|+.+|+++
T Consensus        23 ~~~~~A~~~~~~a   35 (91)
T 1na3_A           23 GDYDEAIEYYQKA   35 (91)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            3333333333333

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.06  E-value=3.1e-05  Score=83.23  Aligned_cols=80  Identities=10%  Similarity=0.128  Sum_probs=45.9

Q ss_pred             cCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-------CC---HHHH
Q 005877          296 ERNYTKALEWLTHAARQ-------QL---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------EE---AGGH  355 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-------~~---~~a~  355 (672)
                      +|++++|+..|+++++.       ++   ..++++||.+|..     +|++++|+.+++++++.       ++   +.++
T Consensus       322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-----LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            56677777777666642       12   2345666666654     45666666666666543       12   3345


Q ss_pred             HHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877          356 YNLGVMYYKGIGVKRDVKLACKYFLVAAN  384 (672)
Q Consensus       356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~  384 (672)
                      ++||.+|..    .|++++|..+|++|++
T Consensus       397 ~nLa~~~~~----~G~~~eA~~~~~~Al~  421 (490)
T 3n71_A          397 MRAGLTNWH----AGHIEVGHGMICKAYA  421 (490)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            566666665    5566666666666543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.05  E-value=3.3e-05  Score=64.20  Aligned_cols=68  Identities=16%  Similarity=0.115  Sum_probs=62.3

Q ss_pred             CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ++.+++.+|.+++    ..+++++|+.+|+++++  +.++.+++++|.+|..    .+++++|+.+++++++++|+..
T Consensus         3 ~~~~~~~~g~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~   72 (111)
T 2l6j_A            3 QFEKQKEQGNSLF----KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAIQMCQQGLRYTSTAE   72 (111)
T ss_dssp             HHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSCSSTT
T ss_pred             hHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcc
Confidence            3578899999999    89999999999999977  4789999999999988    8999999999999999999863

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.00  E-value=4.8e-05  Score=66.86  Aligned_cols=89  Identities=9%  Similarity=0.057  Sum_probs=76.6

Q ss_pred             CchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcC----CHHHHHHHHHHHHcC
Q 005877          483 TDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQR---DYERAAEAYMHARSQS----NAQAMFNLGYMHEHG  553 (672)
Q Consensus       483 ~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~---d~~~A~~~~~~A~~~~----~~~a~~~Lg~~y~~g  553 (672)
                      ...+....+.+.|.....  +.+.++.+++||++.    ...   +.++++..++..++.+    +.+++|+||..|.+ 
T Consensus         9 l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv----~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-   83 (152)
T 1pc2_A            9 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV----RSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-   83 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH----TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-
Confidence            347788888888887766  456999999999999    545   7889999999998865    46899999999988 


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877          554 QGLPLDLHLAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       554 ~g~~~d~~~A~~~~~~A~~~~~~~~~  579 (672)
                         .+|+++|++|++++++.+|+...
T Consensus        84 ---l~~Y~~A~~y~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           84 ---LKEYEKALKYVRGLLQTEPQNNQ  106 (152)
T ss_dssp             ---TSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ---ccCHHHHHHHHHHHHhcCCCCHH
Confidence               89999999999999999998654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.99  E-value=4.3e-05  Score=82.21  Aligned_cols=111  Identities=8%  Similarity=-0.054  Sum_probs=93.1

Q ss_pred             cCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-------CCH---HHHHH
Q 005877          261 RDRTKALMWFSKAADK-------GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-------QLY---SAYNG  320 (672)
Q Consensus       261 ~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~~  320 (672)
                      +++++|+..++++++.       .+   ..++.+||.+|..    +|++++|+.+++++++.       +++   .++++
T Consensus       323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4999999999999873       34   4688999999999    99999999999999863       343   46899


Q ss_pred             HHHHHHcCCCCCcCCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877          321 IGYLYVKGYGVEKKNYTKAKEYFEKAADN-------EE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN  384 (672)
Q Consensus       321 Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~  384 (672)
                      ||.+|..     +|++++|+.+|++|++.       ++   .+...+|+.++..    .+.+++|...|+++.+
T Consensus       399 La~~~~~-----~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e----~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          399 AGLTNWH-----AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME----LRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-----CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            9999996     78999999999999874       34   3455788888888    8899999999988754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.89  E-value=4.1e-05  Score=63.52  Aligned_cols=68  Identities=24%  Similarity=0.267  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877          503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ---------SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV  573 (672)
Q Consensus       503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  573 (672)
                      ++.-.+.||..++    ..++|.+|+.||++|++.         ..+..+.+||.+|..    .|++++|+.++++|+++
T Consensus         4 sa~dc~~lG~~~~----~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAY----TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH----HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhc
Confidence            3566789999999    899999999999999863         357889999999988    89999999999999999


Q ss_pred             CCCCc
Q 005877          574 DPAAK  578 (672)
Q Consensus       574 ~~~~~  578 (672)
                      +|+..
T Consensus        76 ~P~~~   80 (104)
T 2v5f_A           76 DPEHQ   80 (104)
T ss_dssp             CTTCH
T ss_pred             CCCCH
Confidence            99863

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.75  E-value=0.03  Score=60.28  Aligned_cols=202  Identities=9%  Similarity=-0.085  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHH
Q 005877          337 TKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATAL  414 (672)
Q Consensus       337 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~  414 (672)
                      +.....|++++..  ..+..++..+..+..    .++.++|...|++|+.. +.....++......-.  ..-+++....
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~----~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~--~~~~~~l~~~  268 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIG----IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDE--EAVYGDLKRK  268 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTC--THHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcch--hHHHHHHHHH
Confidence            3445667776663  456666767666666    66777777777777665 3222222222221100  0001111100


Q ss_pred             HHHHHH-------cC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCcccCCCCCCC
Q 005877          415 YKLVAE-------RG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELGY--EVAQSNAAWILDKYGEGSMCMGESGFCT  483 (672)
Q Consensus       415 ~~~a~~-------~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~--~~a~~nla~~l~~~~~~~~~~~~~~~~~  483 (672)
                      +.. .+       ..  +...+...+......++.+.|...|++| ....  ...+...|.+-...              
T Consensus       269 ~~~-~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~--------------  332 (493)
T 2uy1_A          269 YSM-GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA--------------  332 (493)
T ss_dssp             TC-----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH--------------
T ss_pred             HHh-hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH--------------
Confidence            000 00       00  0112222333333455677777777777 3221  12222223222210              


Q ss_pred             chHhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHH
Q 005877          484 DAERHQCAHSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLH  561 (672)
Q Consensus       484 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~  561 (672)
                       .++.+.|..+|+++++.  ++++.+..+++...    ..++.+.|...|+++.+  +...+.... -++.   ..||.+
T Consensus       333 -~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~----~~~~~~~aR~l~er~~k--~~~lw~~~~-~fE~---~~G~~~  401 (493)
T 2uy1_A          333 -TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL----RIGDEENARALFKRLEK--TSRMWDSMI-EYEF---MVGSME  401 (493)
T ss_dssp             -HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----HHTCHHHHHHHHHHSCC--BHHHHHHHH-HHHH---HHSCHH
T ss_pred             -CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHH--HHHHHHHHH-HHHH---HCCCHH
Confidence             11456677777766542  33554455555544    45677777777777621  221111111 1222   135777


Q ss_pred             HHHHHHHHHHh
Q 005877          562 LAKRYYDQALE  572 (672)
Q Consensus       562 ~A~~~~~~A~~  572 (672)
                      .+...++++..
T Consensus       402 ~~r~v~~~~~~  412 (493)
T 2uy1_A          402 LFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777664

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.72  E-value=0.00077  Score=65.64  Aligned_cols=115  Identities=10%  Similarity=-0.087  Sum_probs=85.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCcccCC-CCCCCchHhHHHHHHHHHHHHhCCC----HHHHHHHHHHHHhCCC-CCCCHHH
Q 005877          453 LGYEVAQSNAAWILDKYGEGSMCMGE-SGFCTDAERHQCAHSLWWQASEQGN----EHAALLIGDAYYYGRG-TQRDYER  526 (672)
Q Consensus       453 ~g~~~a~~nla~~l~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lG~~y~~g~g-~~~d~~~  526 (672)
                      .++++++++.|.+...      +.+. .+-........+|..+++++++.++    ..++..||.+|..--+ .-||.++
T Consensus       149 ~~dve~L~W~ai~~ss------~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ek  222 (301)
T 3u64_A          149 RVDVGTLYWVGTGYVA------AFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEK  222 (301)
T ss_dssp             GGGHHHHHHHHHHHHH------HHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHH
T ss_pred             ccccHHHHHHHHHHHH------HHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHH
Confidence            4566677766666544      1111 1223346678899999999877765    4589999999984110 1489999


Q ss_pred             HHHHHHHHHhc--C-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          527 AAEAYMHARSQ--S-NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       527 A~~~~~~A~~~--~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      |.++|++|++.  + +..+.+..|..+..   ..+|++.|.+++++|+..+|.
T Consensus       223 A~~~ferAL~LnP~~~id~~v~YA~~l~~---~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          223 AHTAFEHLTRYCSAHDPDHHITYADALCI---PLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHCCTTCSHHHHHHHHHTTT---TTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHH---hcCCHHHHHHHHHHHHcCCCC
Confidence            99999999874  3 49999999998754   148999999999999999877

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.67  E-value=0.00018  Score=58.09  Aligned_cols=72  Identities=13%  Similarity=0.039  Sum_probs=62.6

Q ss_pred             hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          500 EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       500 ~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      .+.+++.+..+|.+++... .....++|..++++|++  ++++.+++.||.++..    .|++++|+.+|+++++.+|+
T Consensus         2 ~p~~~~~~~~~a~al~~~~-~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLH-KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTT-TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence            4678999999999997432 23457999999999976  5899999999999988    89999999999999999988

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.66  E-value=0.00026  Score=58.57  Aligned_cols=71  Identities=21%  Similarity=0.260  Sum_probs=42.2

Q ss_pred             HHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCHHHH
Q 005877          391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERG---------PWSSLSRWALESYLKGDVGKAFLLYSRMAE--LGYEVAQ  459 (672)
Q Consensus       391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~g~~~a~  459 (672)
                      .+.||..+..    .+++.+|+.||++|++..         .+..+..+|.+++..|++++|+.+++++++  ++++.+.
T Consensus         8 c~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            8 CFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            3444444444    445555555555544421         234566777777777888888888877744  4577777


Q ss_pred             HHHHHH
Q 005877          460 SNAAWI  465 (672)
Q Consensus       460 ~nla~~  465 (672)
                      .|++++
T Consensus        84 ~n~~~~   89 (104)
T 2v5f_A           84 GNLKYF   89 (104)
T ss_dssp             HHHHHH
T ss_pred             hhHHHH
Confidence            777643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.59  E-value=0.00018  Score=58.38  Aligned_cols=86  Identities=14%  Similarity=0.009  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChH-HHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHH
Q 005877           88 SYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPH-ARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQS  162 (672)
Q Consensus        88 ~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~-a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a  162 (672)
                      .+..|..++.       .+++++|+..|+++.  ++.++. +++.+|.+|..    .+++++|+.+|++++.  ++++.+
T Consensus         3 ~~~~a~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~   71 (99)
T 2kc7_A            3 QLKTIKELIN-------QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKALNNYQSAIELNPDSPAL   71 (99)
T ss_dssp             THHHHHHHHH-------HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred             HHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHH
Confidence            4566776664       589999999999954  457888 99999999998    8999999999999987  677776


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877          163 KMAVAYTYLRQDMHDKAVKLYAELAEIAVN  192 (672)
Q Consensus       163 ~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~  192 (672)
                      +..        +.+.+++.+|+++....|.
T Consensus        72 ~~~--------~~~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           72 QAR--------KMVMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHH--------HHHHHHHHHHCCTTHHHHC
T ss_pred             HHH--------HHHHHHHHHHHHHhccCcc
Confidence            643        5677888888888776654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.59  E-value=0.0013  Score=66.88  Aligned_cols=70  Identities=13%  Similarity=-0.029  Sum_probs=61.3

Q ss_pred             hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          500 EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       500 ~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      .+.++.++..++.++.    ..+++++|+.++++|+.. .++.++..+|++++.    .|+.++|++.|++|+.++|..
T Consensus       273 ~~~~a~~~~alal~~l----~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~----~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          273 LNNLSIIYQIKAVSAL----VKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM----KGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             GTTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCSH
T ss_pred             CCcCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCc
Confidence            4567888888888887    779999999999999886 567777889999987    899999999999999999974

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.59  E-value=0.0047  Score=66.64  Aligned_cols=151  Identities=15%  Similarity=0.110  Sum_probs=103.5

Q ss_pred             cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC----CCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcC
Q 005877          296 ERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGY----GVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKG  365 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~----g~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g  365 (672)
                      .|+.++|++.|++..+.|   +...++.|=..+..+.    ....++.++|.+.|++..+.+   +..++..|-..|.+ 
T Consensus        39 ~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~-  117 (501)
T 4g26_A           39 KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA-  117 (501)
T ss_dssp             SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-
Confidence            677788888877777665   5555555544443221    112235677888888777765   56677777777777 


Q ss_pred             CCchhcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCC
Q 005877          366 IGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---PWSSLSRWALESYLKGD  439 (672)
Q Consensus       366 ~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~g~  439 (672)
                         .++.++|.+.|++..+.|   +...+..+-..|-.    .++.++|..+|++..+.+   +...+..+-..+.+.|+
T Consensus       118 ---~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~  190 (501)
T 4g26_A          118 ---KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR----KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN  190 (501)
T ss_dssp             ---HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred             ---cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence               778888888888777665   45555555555555    678888888888887776   33456667777888888


Q ss_pred             HHHHHHHHHHHHHcC
Q 005877          440 VGKAFLLYSRMAELG  454 (672)
Q Consensus       440 ~~~A~~~~~~a~~~g  454 (672)
                      .++|...+++.-+.+
T Consensus       191 ~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          191 ADKVYKTLQRLRDLV  205 (501)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhC
Confidence            888888888876665

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.55  E-value=0.00016  Score=58.70  Aligned_cols=64  Identities=22%  Similarity=0.212  Sum_probs=57.0

Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHH-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877          508 LLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQ-AMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       508 ~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~-a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  579 (672)
                      +..|..+.    ..+++++|+.+|+++++.  .++. +++++|.+|..    .+++++|+.+|+++++++|+...
T Consensus         4 ~~~a~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~   70 (99)
T 2kc7_A            4 LKTIKELI----NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKALNNYQSAIELNPDSPA   70 (99)
T ss_dssp             HHHHHHHH----HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTH
T ss_pred             HHHHHHHH----HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHH
Confidence            67888888    889999999999999774  6788 99999999987    89999999999999999988653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.53  E-value=0.0011  Score=58.16  Aligned_cols=91  Identities=16%  Similarity=0.109  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC----CHHHHHHHHHH
Q 005877          440 VGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG----NEHAALLIGDA  513 (672)
Q Consensus       440 ~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lG~~  513 (672)
                      ...+...|.+..+.|  ...+.+++||.|.+             +....+.++++.+++...+.+    +.+.+|+||..
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-------------S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~   80 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-------------SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   80 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-------------CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHH
Confidence            455666777776644  68899999999987             333678999999999887766    37889999999


Q ss_pred             HHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHH
Q 005877          514 YYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLG  547 (672)
Q Consensus       514 y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg  547 (672)
                      |+    ..+||++|+++++++++  ++|.+|..-.-
T Consensus        81 ~~----kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           81 NY----RLKEYEKALKYVRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HH----HTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HH----HccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            99    89999999999999976  57888754443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.45  E-value=0.00024  Score=57.43  Aligned_cols=70  Identities=9%  Similarity=-0.058  Sum_probs=59.2

Q ss_pred             hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 005877          120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIA  190 (672)
Q Consensus       120 ~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~  190 (672)
                      ++.+++.+..+|.++.. .+.....++|..++++++.  ++++.+++.||..+...|++++|+.+|+++++..
T Consensus         2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            46789999999998754 1113457999999999876  8999999999999999999999999999998754

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.44  E-value=0.0035  Score=61.06  Aligned_cols=106  Identities=12%  Similarity=0.108  Sum_probs=83.8

Q ss_pred             CCCHHHHHHHHHHHHc-------CCCchhcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCC-CccCCHHHHHHHHH
Q 005877          349 NEEAGGHYNLGVMYYK-------GIGVKRDVKLACKYFLVAANAGH----QKAFYQLAKMFHTGV-GLKKNLHMATALYK  416 (672)
Q Consensus       349 ~~~~~a~~~Lg~~y~~-------g~g~~~~~~~A~~~~~~A~~~~~----~~a~~~L~~~y~~g~-g~~~~~~~A~~~~~  416 (672)
                      .++++++++.|..+..       |.+......+|...+++|++.+.    ..++..||.+|..-- ..-|+.++|..+|+
T Consensus       149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe  228 (301)
T 3u64_A          149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE  228 (301)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence            3578888888876643       24567788999999999988653    458999999998611 11379999999999


Q ss_pred             HHHHcCC---hhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcC
Q 005877          417 LVAERGP---WSSLSRWALESYL-KGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       417 ~a~~~~~---~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~g  454 (672)
                      +|++.+|   ..+.+..|..+.. .|++++|..++++++...
T Consensus       229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~  270 (301)
T 3u64_A          229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID  270 (301)
T ss_dssp             HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence            9999885   6678888888877 499999999999998754

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.41  E-value=0.0017  Score=65.90  Aligned_cols=65  Identities=12%  Similarity=-0.033  Sum_probs=31.6

Q ss_pred             CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC
Q 005877          351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP  423 (672)
Q Consensus       351 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~  423 (672)
                      ++.++.-++.++..    .+++++|+.++++|+..+ +..++..+|.++..    .|+.++|++.|++|+..+|
T Consensus       276 ~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~----~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          276 LSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM----KGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCC
Confidence            34444444444444    445555555555554433 23333444555544    5555555555555555544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.40  E-value=0.00027  Score=74.70  Aligned_cols=79  Identities=14%  Similarity=0.069  Sum_probs=48.4

Q ss_pred             CCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc-----C--CH---HHHHH
Q 005877          334 KNYTKAKEYFEKAADN-------EE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-----G--HQ---KAFYQ  393 (672)
Q Consensus       334 ~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~--~~---~a~~~  393 (672)
                      |++++|+.+++++++.       ++   ..++.+||.+|..    .|++++|+.+|+++++.     |  |+   .++++
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  387 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK  387 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            4777777777777653       12   3456677777777    67777777777776541     1  22   34556


Q ss_pred             HHHHHHcCCCccCCHHHHHHHHHHHHH
Q 005877          394 LAKMFHTGVGLKKNLHMATALYKLVAE  420 (672)
Q Consensus       394 L~~~y~~g~g~~~~~~~A~~~~~~a~~  420 (672)
                      ||.+|..    ++++++|+.+|++|++
T Consensus       388 La~~~~~----qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          388 LGRLYMG----LENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHh----ccCHHHHHHHHHHHHH
Confidence            6666655    5566666665555543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.35  E-value=0.022  Score=61.45  Aligned_cols=153  Identities=10%  Similarity=0.071  Sum_probs=78.5

Q ss_pred             hhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCC----CcccCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 005877          219 LRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLR----GLRRDRTKALMWFSKAADKG---EPQSMEFLGEI  288 (672)
Q Consensus       219 ~~~~~g~~~~Ai~~~~~aa~~~---~~~a~~~Lg~~y~~~~~----~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~  288 (672)
                      .+.+.|+.++|++.|+++.+.|   +...+..|-..+...+.    ...++.++|.+.|++....|   +...+..|-..
T Consensus        35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~  114 (501)
T 4g26_A           35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL  114 (501)
T ss_dssp             HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            4456677777777777766655   44455555444433311    01123556666666555543   44555555555


Q ss_pred             HHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Q 005877          289 YARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMY  362 (672)
Q Consensus       289 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y  362 (672)
                      |..    .++.++|..+|++..+.|   +...++.|=..|..     .|+.++|.+.|++..+.|   +...+..|-..|
T Consensus       115 ~~~----~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-----~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~  185 (501)
T 4g26_A          115 AVA----KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-----KGDADKAYEVDAHMVESEVVPEEPELAALLKVS  185 (501)
T ss_dssp             HHH----HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHh----cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            555    555556655555555443   44444444444433     345555555555555543   344444444444


Q ss_pred             HcCCCchhcHHHHHHHHHHHHH
Q 005877          363 YKGIGVKRDVKLACKYFLVAAN  384 (672)
Q Consensus       363 ~~g~g~~~~~~~A~~~~~~A~~  384 (672)
                      .+    .|+.++|.+.|++..+
T Consensus       186 ~~----~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          186 MD----TKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HH----TTCHHHHHHHHHHHHH
T ss_pred             hh----CCCHHHHHHHHHHHHH
Confidence            44    4555555555555443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.34  E-value=0.00035  Score=73.77  Aligned_cols=80  Identities=14%  Similarity=0.056  Sum_probs=67.7

Q ss_pred             cCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-------CC---HHHH
Q 005877          296 ERNYTKALEWLTHAARQ-------QL---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------EE---AGGH  355 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-------~~---~~a~  355 (672)
                      .+++++|+..|+++++.       ++   ..++++||.+|..     +|++++|+.+++++++.       ++   +.++
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  385 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW  385 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence            67899999999999863       23   3568899999986     78999999999999874       23   4578


Q ss_pred             HHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877          356 YNLGVMYYKGIGVKRDVKLACKYFLVAAN  384 (672)
Q Consensus       356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~  384 (672)
                      ++||.+|..    .|++++|..+|++|++
T Consensus       386 ~nLa~~~~~----qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          386 LKLGRLYMG----LENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh----ccCHHHHHHHHHHHHH
Confidence            899999999    9999999999999976

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.13  E-value=0.0031  Score=66.54  Aligned_cols=80  Identities=9%  Similarity=0.000  Sum_probs=52.2

Q ss_pred             cCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-------CC---HHHH
Q 005877          296 ERNYTKALEWLTHAARQ-------QL---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------EE---AGGH  355 (672)
Q Consensus       296 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-------~~---~~a~  355 (672)
                      ++++++|+..++++++.       .+   ..++.+||.+|..     +|++++|+.+++++++.       ++   +..+
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-----~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-----LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            56777777777777653       12   3456677777764     56777777777777653       22   3456


Q ss_pred             HHHHHHHHcCCCchhcHHHHHHHHHHHHH
Q 005877          356 YNLGVMYYKGIGVKRDVKLACKYFLVAAN  384 (672)
Q Consensus       356 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~  384 (672)
                      ++||.+|..    .|++++|..+|++|++
T Consensus       375 ~nLa~~~~~----~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          375 MKVGKLQLH----QGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHH
Confidence            677777777    6777777777777754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.09  E-value=0.0018  Score=68.32  Aligned_cols=80  Identities=8%  Similarity=-0.068  Sum_probs=53.2

Q ss_pred             cCCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc-------CCH---HHHH
Q 005877          333 KKNYTKAKEYFEKAADN-------EE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-------GHQ---KAFY  392 (672)
Q Consensus       333 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~---~a~~  392 (672)
                      ++++++|+..++++++.       ++   ..++.+||.+|..    .|++++|+.+++++++.       .|+   ..++
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            35888888888888764       12   4566778888877    77888888888877651       232   4556


Q ss_pred             HHHHHHHcCCCccCCHHHHHHHHHHHHH
Q 005877          393 QLAKMFHTGVGLKKNLHMATALYKLVAE  420 (672)
Q Consensus       393 ~L~~~y~~g~g~~~~~~~A~~~~~~a~~  420 (672)
                      +||.+|..    ++++++|+.+|++|++
T Consensus       376 nLa~~~~~----~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          376 KVGKLQLH----QGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHH
Confidence            66666665    5666666666665543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.04  E-value=0.48  Score=50.74  Aligned_cols=326  Identities=11%  Similarity=-0.050  Sum_probs=163.5

Q ss_pred             cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhC-CChHHHHHHHH-HhhcCCcccCCHHHHHHHHHHHHh-----C
Q 005877           85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME-GDPHARSVLGF-LYGMGMMRERNKGKAFLYHHFAAE-----G  157 (672)
Q Consensus        85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~-~y~~G~g~~~d~~~A~~~~~~A~~-----~  157 (672)
                      +...|..++..+-       .++++.+..+|+++... .+.+.+..... .-..  +  ...+.....|++|+.     .
T Consensus        14 aR~vyer~l~~~P-------~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~--~--~~~~~i~~~fe~al~~vg~d~   82 (493)
T 2uy1_A           14 PSAIMEHARRLYM-------SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKV--S--QKKFKLYEVYEFTLGQFENYW   82 (493)
T ss_dssp             HHHHHHHHHHHHH-------TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH--C------CTHHHHHHHHHHSTTCT
T ss_pred             HHHHHHHHHHHCC-------CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh--C--chHHHHHHHHHHHHHHcCCCc
Confidence            4445556665552       16788888888887664 34554433222 2222  1  123455667777775     2


Q ss_pred             CCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccch----hc---ccCchhhhhHhhhccCCh
Q 005877          158 GNIQSKMAVAYTYL----RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPI----RI---HNGAEENKGALRKSRGED  226 (672)
Q Consensus       158 ~~~~a~~~Lg~~y~----~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~----~l---~~~~~~~~~~~~~~~g~~  226 (672)
                      .+..........+.    .+++.+.+...|++++.. |.        .....+    ..   ..+.......+....+.+
T Consensus        83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~--------~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y  153 (493)
T 2uy1_A           83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PM--------GSLSELWKDFENFELELNKITGKKIVGDTLPIF  153 (493)
T ss_dssp             TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CC--------TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hh--------hhHHHHHHHHHHHHHHhccccHHHHHHHHhHHH
Confidence            34444444444433    245677788888888752 10        000000    00   000000000011111233


Q ss_pred             HHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCccc--CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCH
Q 005877          227 DEAFQILEYQAQK---GNAGAMYKIGLFYYFGLRGLRR--DRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNY  299 (672)
Q Consensus       227 ~~Ai~~~~~aa~~---~~~~a~~~Lg~~y~~~~~~~~~--~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~  299 (672)
                      ..|...++.+...   .+...+......-.....+...  ..++....|++++.  +..+..+...+..+..    .++.
T Consensus       154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~----~~~~  229 (493)
T 2uy1_A          154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG----IGQK  229 (493)
T ss_dssp             HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TTCH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCH
Confidence            3344344433221   1222232222221111001111  14566788999887  4678888888888887    7899


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHcCCC
Q 005877          300 TKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN------------EEAGGHYNLGVMYYKGIG  367 (672)
Q Consensus       300 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g  367 (672)
                      ++|...|++|+... ......+......    +.   ++...-+..+...            .....+...+.....   
T Consensus       230 ~~ar~i~erAi~~P-~~~~l~~~y~~~~----e~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r---  298 (493)
T 2uy1_A          230 EKAKKVVERGIEMS-DGMFLSLYYGLVM----DE---EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK---  298 (493)
T ss_dssp             HHHHHHHHHHHHHC-CSSHHHHHHHHHT----TC---THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhCC-CcHHHHHHHHhhc----ch---hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH---
Confidence            99999999998762 1112222211111    01   1111111111100            012344555555555   


Q ss_pred             chhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHHH
Q 005877          368 VKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKA  443 (672)
Q Consensus       368 ~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~A  443 (672)
                       .++.+.|...|++| +..  ....+...+.+-..   ..++.+.|...|+++++..+.  ......+......|+.+.|
T Consensus       299 -~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~---~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~a  373 (493)
T 2uy1_A          299 -KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYY---ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENA  373 (493)
T ss_dssp             -HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHH---HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             -cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHH---HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH
Confidence             66789999999998 422  23333333444332   134788999999999886643  2233344445567888888


Q ss_pred             HHHHHHH
Q 005877          444 FLLYSRM  450 (672)
Q Consensus       444 ~~~~~~a  450 (672)
                      ...|+++
T Consensus       374 R~l~er~  380 (493)
T 2uy1_A          374 RALFKRL  380 (493)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHH
Confidence            8888887

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.63  E-value=0.026  Score=47.53  Aligned_cols=89  Identities=9%  Similarity=0.032  Sum_probs=71.2

Q ss_pred             hHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHcCCCCCC
Q 005877          485 AERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNA----QAMFNLGYMHEHGQGLPL  558 (672)
Q Consensus       485 ~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~~~----~a~~~Lg~~y~~g~g~~~  558 (672)
                      ......+...|.....  ....++.++++|++... ....|..+++..++..+..++|    +.+|.||..|.+    .|
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk----lg   88 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LK   88 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH----TT
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH----hh
Confidence            4456667777776655  45699999999999842 1344566799999998876543    789999999998    89


Q ss_pred             CHHHHHHHHHHHHhcCCCCc
Q 005877          559 DLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       559 d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ||.+|+++.+..++..|+..
T Consensus        89 ~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           89 EYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999864

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.60  E-value=0.033  Score=46.96  Aligned_cols=89  Identities=17%  Similarity=0.123  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC----HHHHHHHHHH
Q 005877          440 VGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN----EHAALLIGDA  513 (672)
Q Consensus       440 ~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lG~~  513 (672)
                      ...+...|.+..+.|  ...+.+++||.|-+             +....+..+++.+++...+.++    -+.+|.||..
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-------------S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg   83 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-------------TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   83 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-------------SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            455666777776644  68889999999977             3447788999999998877764    4678999999


Q ss_pred             HHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHH
Q 005877          514 YYYGRGTQRDYERAAEAYMHARS--QSNAQAMFN  545 (672)
Q Consensus       514 y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~  545 (672)
                      ++    ..++|.+|.++.+..++  ++|.+|..-
T Consensus        84 ~y----klg~Y~~A~~~~~~lL~~eP~n~QA~~L  113 (126)
T 1nzn_A           84 NY----RLKEYEKALKYVRGLLQTEPQNNQAKEL  113 (126)
T ss_dssp             HH----HTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HH----HhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99    89999999999999866  578877543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.03  E-value=0.16  Score=43.59  Aligned_cols=93  Identities=10%  Similarity=0.029  Sum_probs=72.6

Q ss_pred             CCchHhHHHHHHHHHHH-HhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCC
Q 005877          482 CTDAERHQCAHSLWWQA-SEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ---SNAQAMFNLGYMHEHGQGLP  557 (672)
Q Consensus       482 ~~~~~~~~~A~~~~~~a-~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~a~~~Lg~~y~~g~g~~  557 (672)
                      +...+++....+-|.+- ...-.+++.++++|++.... ...|..+++..++.....   ..-+.+|.|+.-|.+    .
T Consensus        16 ~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~-~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk----l   90 (144)
T 1y8m_A           16 PLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----L   90 (144)
T ss_dssp             CCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT----T
T ss_pred             CCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH----h
Confidence            33466666666666653 23456899999999998432 355677999999998763   356899999999998    9


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcc
Q 005877          558 LDLHLAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       558 ~d~~~A~~~~~~A~~~~~~~~~  579 (672)
                      |||.+|++|.+..++..|+..-
T Consensus        91 ~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           91 GEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             TCHHHHHHHHHHHHHTCCCCHH
T ss_pred             hhHHHHHHHHHHHHhcCCCcHH
Confidence            9999999999999999998743

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.86  E-value=0.2  Score=42.35  Aligned_cols=93  Identities=10%  Similarity=0.029  Sum_probs=72.2

Q ss_pred             CCchHhHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCC
Q 005877          482 CTDAERHQCAHSLWWQAS-EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ---SNAQAMFNLGYMHEHGQGLP  557 (672)
Q Consensus       482 ~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~a~~~Lg~~y~~g~g~~  557 (672)
                      +...+++....+-|..-. ..-.+.+.++++|++.... ...|..+++..++...+.   ..-+.+|.|+.-|.+    .
T Consensus        17 ~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk----l   91 (134)
T 3o48_A           17 PLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----L   91 (134)
T ss_dssp             CCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----H
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH----h
Confidence            344667777777776532 2235899999999998542 345778999999888764   246789999999998    8


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcc
Q 005877          558 LDLHLAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       558 ~d~~~A~~~~~~A~~~~~~~~~  579 (672)
                      ||+.+|++|-+..++..|+..-
T Consensus        92 gdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           92 GEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHH
T ss_pred             hhHHHHHHHHHHHHhhCCCCHH
Confidence            9999999999999999999753

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.59  E-value=0.31  Score=41.71  Aligned_cols=74  Identities=16%  Similarity=0.117  Sum_probs=60.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 005877          454 GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG---NEHAALLIGDAYYYGRGTQRDYERAAEA  530 (672)
Q Consensus       454 g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lG~~y~~g~g~~~d~~~A~~~  530 (672)
                      -...+.+++||.|-+             +....+..+++.+++.....+   .-+-+|.|+.-++    +.+||.+|.++
T Consensus        37 vs~~t~F~YAw~Lv~-------------S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y----kl~~Y~~Ar~y   99 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIK-------------STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY----KLGEYSMAKRY   99 (144)
T ss_dssp             SCHHHHHHHHHHHHH-------------SSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH----TTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH----HhhhHHHHHHH
Confidence            367889999999988             444788999999999765433   3678899999999    99999999999


Q ss_pred             HHHHHh--cCCHHHHH
Q 005877          531 YMHARS--QSNAQAMF  544 (672)
Q Consensus       531 ~~~A~~--~~~~~a~~  544 (672)
                      .+..++  ++|.+|..
T Consensus       100 ~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A          100 VDTLFEHERNNKQVGA  115 (144)
T ss_dssp             HHHHHHTCCCCHHHHH
T ss_pred             HHHHHhcCCCcHHHHH
Confidence            999876  46777743

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.55  E-value=0.2  Score=42.32  Aligned_cols=73  Identities=16%  Similarity=0.119  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005877          455 YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN---EHAALLIGDAYYYGRGTQRDYERAAEAY  531 (672)
Q Consensus       455 ~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lG~~y~~g~g~~~d~~~A~~~~  531 (672)
                      .+.+.+++||.+.+             +....+..+++.+++...+.++   -+-+|.|+.-++    ..+||++|.++.
T Consensus        39 s~qt~F~yAw~Lv~-------------S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y----klgdY~~Ar~y~  101 (134)
T 3o48_A           39 TIQSRFNYAWGLIK-------------STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY----KLGEYSMAKRYV  101 (134)
T ss_dssp             CHHHHHHHHHHHHH-------------SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----HHTCHHHHHHHH
T ss_pred             ChhhHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH----HhhhHHHHHHHH
Confidence            67889999999988             4447789999999997665443   677899999999    899999999999


Q ss_pred             HHHHh--cCCHHHHH
Q 005877          532 MHARS--QSNAQAMF  544 (672)
Q Consensus       532 ~~A~~--~~~~~a~~  544 (672)
                      +..++  ++|.+|..
T Consensus       102 d~lL~~eP~N~QA~~  116 (134)
T 3o48_A          102 DTLFEHERNNKQVGA  116 (134)
T ss_dssp             HHHHTTCTTCHHHHH
T ss_pred             HHHHhhCCCCHHHHH
Confidence            99977  46777743

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.55  E-value=0.094  Score=46.28  Aligned_cols=122  Identities=13%  Similarity=0.086  Sum_probs=69.7

Q ss_pred             cCCHHHHHHHHHHHHh--CCCH---------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcc
Q 005877          141 ERNKGKAFLYHHFAAE--GGNI---------QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIH  209 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~--~~~~---------~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~  209 (672)
                      .+-|+.|+....+++.  ..++         ..+..+|..+...++|..|..+|++++.............   ..+.. 
T Consensus        33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~---~~~~~-  108 (167)
T 3ffl_A           33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR---PSTGN-  108 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred             hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc---ccccc-
Confidence            5567777777777543  1222         4778899999999999999999999887654211110000   00000 


Q ss_pred             cCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHH-HHcCCHHHHHHHHHH
Q 005877          210 NGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKA-ADKGEPQSMEFLGEI  288 (672)
Q Consensus       210 ~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a-~~~~~~~a~~~Lg~~  288 (672)
                                   ........      ....+.+..|.++.+|...     +++++|+..++.. .+...+.....||.+
T Consensus       109 -------------~ss~p~s~------~~~~e~Elkykia~C~~~l-----~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakL  164 (167)
T 3ffl_A          109 -------------SASTPQSQ------CLPSEIEVKYKLAECYTVL-----KQDKDAIAILDGIPSRQRTPKINMLLANL  164 (167)
T ss_dssp             ---------------------------CCCCHHHHHHHHHHHHHHT-----TCHHHHHHHHHTSCGGGCCHHHHHHHHHH
T ss_pred             -------------cCCCcccc------cccchHHHHHHHHHHHHHH-----CCHHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence                         00000000      0013556677777777776     4777777777764 344667777777776


Q ss_pred             HH
Q 005877          289 YA  290 (672)
Q Consensus       289 y~  290 (672)
                      |.
T Consensus       165 y~  166 (167)
T 3ffl_A          165 YK  166 (167)
T ss_dssp             CC
T ss_pred             hc
Confidence            64

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.00  E-value=1.7  Score=38.84  Aligned_cols=97  Identities=11%  Similarity=0.061  Sum_probs=54.5

Q ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhh
Q 005877          141 ERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR  220 (672)
Q Consensus       141 ~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  220 (672)
                      .++++.|.+..+..   ++..-+..||..-+..|+++-|..+|+++-+.                        ..+..+|
T Consensus        18 lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------------------------~~L~~Ly   70 (177)
T 3mkq_B           18 YGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHSF------------------------DKLSFLY   70 (177)
T ss_dssp             TTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH------------------------HHHHHHH
T ss_pred             cCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH------------------------HHHHHHH
Confidence            45566665554432   55556666666666666666666666664221                        1244455


Q ss_pred             hccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHH
Q 005877          221 KSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSK  272 (672)
Q Consensus       221 ~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~  272 (672)
                      ...|+.++-...-+.+...|+....+......        +|++++++.|.+
T Consensus        71 ~~tg~~e~L~kla~iA~~~g~~n~af~~~l~l--------Gdv~~~i~lL~~  114 (177)
T 3mkq_B           71 LVTGDVNKLSKMQNIAQTREDFGSMLLNTFYN--------NSTKERSSIFAE  114 (177)
T ss_dssp             HHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------TCHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHCccHHHHHHHHHHc--------CCHHHHHHHHHH
Confidence            55566555555555555556655555443222        377888777754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.68  E-value=0.51  Score=41.60  Aligned_cols=98  Identities=8%  Similarity=0.004  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHH
Q 005877          242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYS  316 (672)
Q Consensus       242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~  316 (672)
                      ..+++.+|..++..     ++|.+|...|++|++.     ..+.+...++ +       ...+.....      ...+.+
T Consensus        63 ~~~l~~ladalf~~-----~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~-~-------~ss~p~s~~------~~~e~E  123 (167)
T 3ffl_A           63 YQLLVYHADSLFHD-----KEYRNAVSKYTMALQQKKALSKTSKVRPSTG-N-------SASTPQSQC------LPSEIE  123 (167)
T ss_dssp             HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHCC----------------------------C------CCCHHH
T ss_pred             HHHHHHHHHHHHcc-----cHHHHHHHHHHHHHHHHHHHhcCCCcccccc-c-------cCCCccccc------ccchHH
Confidence            35788999999988     5999999999999763     1221111111 0       011111000      113457


Q ss_pred             HHHHHHHHHHcCCCCCcCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHH
Q 005877          317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKA-ADNEEAGGHYNLGVMYY  363 (672)
Q Consensus       317 a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a-~~~~~~~a~~~Lg~~y~  363 (672)
                      ..+.++.||..     .+++++|+..++.. .+.-.+.....||.+|.
T Consensus       124 lkykia~C~~~-----l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          124 VKYKLAECYTV-----LKQDKDAIAILDGIPSRQRTPKINMLLANLYK  166 (167)
T ss_dssp             HHHHHHHHHHH-----TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHH-----HCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence            77888888887     45888888888876 55668888888888764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.44  E-value=4.2  Score=46.02  Aligned_cols=41  Identities=24%  Similarity=0.241  Sum_probs=22.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 005877          262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHA  309 (672)
Q Consensus       262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a  309 (672)
                      +++.|.+..+   ...++..+..||.++..    .++++.|+..|.++
T Consensus       667 ~~~~A~~~~~---~~~~~~~W~~la~~al~----~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          667 QLTLARDLLT---DESAEMKWRALGDASLQ----RFNFKLAIEAFTNA  707 (814)
T ss_dssp             CHHHHHHHHT---TCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHH---hhCcHhHHHHHHHHHHH----cCCHHHHHHHHHHc
Confidence            5555555432   23455555566666665    56666666666543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.01  E-value=14  Score=41.73  Aligned_cols=129  Identities=16%  Similarity=0.124  Sum_probs=72.9

Q ss_pred             HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005877          283 EFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMY  362 (672)
Q Consensus       283 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y  362 (672)
                      ..+..++..    .+..+.|+...+      ++...+.+...        .+++++|.+..+   ..+++..+..||.++
T Consensus       633 ~~~~~~l~~----~~~~~~a~~~~~------~~~~~f~~~l~--------~~~~~~A~~~~~---~~~~~~~W~~la~~a  691 (814)
T 3mkq_A          633 TKIARFLEG----QEYYEEALNISP------DQDQKFELALK--------VGQLTLARDLLT---DESAEMKWRALGDAS  691 (814)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHCC------CHHHHHHHHHH--------HTCHHHHHHHHT---TCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHh----CCChHHheecCC------Ccchheehhhh--------cCCHHHHHHHHH---hhCcHhHHHHHHHHH
Confidence            344445555    666777665543      33333333322        248888877643   456788888999999


Q ss_pred             HcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHH
Q 005877          363 YKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGK  442 (672)
Q Consensus       363 ~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~  442 (672)
                      .+    .++++.|..+|.++   ++....   ..+|..    .++.++....-+.+...+......   ..+...|++++
T Consensus       692 l~----~~~~~~A~~~y~~~---~d~~~l---~~l~~~----~~~~~~~~~~~~~a~~~~~~~~A~---~~~~~~g~~~~  754 (814)
T 3mkq_A          692 LQ----RFNFKLAIEAFTNA---HDLESL---FLLHSS----FNNKEGLVTLAKDAETTGKFNLAF---NAYWIAGDIQG  754 (814)
T ss_dssp             HH----TTCHHHHHHHHHHH---TCHHHH---HHHHHH----TTCHHHHHHHHHHHHHTTCHHHHH---HHHHHHTCHHH
T ss_pred             HH----cCCHHHHHHHHHHc---cChhhh---HHHHHH----cCCHHHHHHHHHHHHHcCchHHHH---HHHHHcCCHHH
Confidence            88    88999999998875   443332   223332    345555444444444443332211   12344667777


Q ss_pred             HHHHHHH
Q 005877          443 AFLLYSR  449 (672)
Q Consensus       443 A~~~~~~  449 (672)
                      |++.|.+
T Consensus       755 a~~~~~~  761 (814)
T 3mkq_A          755 AKDLLIK  761 (814)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=91.66  E-value=22  Score=40.58  Aligned_cols=259  Identities=15%  Similarity=0.082  Sum_probs=152.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH---cCC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 005877          240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD---KGE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ  312 (672)
Q Consensus       240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~---~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  312 (672)
                      +...+...||.++.       ++.++++..+.+.+.   .++    ..|.+.||.++..    .+  .+++.++...+..
T Consensus       374 ~k~sA~aSLGlIh~-------g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag----~~--~~~~~lL~~~L~~  440 (963)
T 4ady_A          374 AKFTATASLGVIHK-------GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAG----FG--RDTTDYLKNIIVE  440 (963)
T ss_dssp             HHHHHHHHHHHHTS-------SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTT----TT--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcc-------CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCC----Cc--HHHHHHHHHHHcC
Confidence            35678888998875       255677888877765   233    4678888888864    33  3688888887765


Q ss_pred             CC--------H----HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHHcCCCchhcHHHHH
Q 005877          313 QL--------Y----SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA----GGHYNLGVMYYKGIGVKRDVKLAC  376 (672)
Q Consensus       313 ~~--------~----~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~y~~g~g~~~~~~~A~  376 (672)
                      ++        .    .+...||.+|.-     .++ +++++.+...+..+++    .+-+.||.++..    .++.+-..
T Consensus       441 ~~~~~~~~~~~~ir~gAaLGLGla~~G-----S~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vG----Tgn~~ai~  510 (963)
T 4ady_A          441 NSGTSGDEDVDVLLHGASLGIGLAAMG-----SAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLG----TGKPEAIH  510 (963)
T ss_dssp             HSSCCSCHHHHHHHHHHHHHHHHHSTT-----CCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT----CCCHHHHH
T ss_pred             ccccccccccHHHHHHHHHHHHHHhcC-----CCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc----cCCHHHHH
Confidence            43        1    356688888862     223 6788888888776654    355677888765    66655555


Q ss_pred             HHHHHHHHcCCHHHH----HHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChh----HHHHHHHHHHhcCCHHHHHHHHH
Q 005877          377 KYFLVAANAGHQKAF----YQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS----SLSRWALESYLKGDVGKAFLLYS  448 (672)
Q Consensus       377 ~~~~~A~~~~~~~a~----~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----a~~~lg~~~~~~g~~~~A~~~~~  448 (672)
                      ..+..+.+..+....    .-||.++      .++.+.+-...+......++.    +..-+|..|...|+...-...+.
T Consensus       511 ~LL~~~~e~~~e~vrR~aalgLGll~------~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~  584 (963)
T 4ady_A          511 DMFTYSQETQHGNITRGLAVGLALIN------YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLH  584 (963)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHT------TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhhh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            555555554444322    2333332      345555555555555545543    34567888889999765555777


Q ss_pred             HHHHcCCHHHHH----HHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHH----HHHHHHHhCCCC
Q 005877          449 RMAELGYEVAQS----NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAAL----LIGDAYYYGRGT  520 (672)
Q Consensus       449 ~a~~~g~~~a~~----nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~----~lG~~y~~g~g~  520 (672)
                      .+.+........    .+|.+..  +                +.+.+...+....+.+++...+    .||.+..    .
T Consensus       585 ~~~~d~~d~VRraAViaLGlI~~--g----------------~~e~v~rlv~~L~~~~d~~VR~gAalALGli~a----G  642 (963)
T 4ady_A          585 VAVSDSNDDVRRAAVIALGFVLL--R----------------DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACA----G  642 (963)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHTS--S----------------SCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS----S
T ss_pred             HhccCCcHHHHHHHHHHHHhhcc--C----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc----C
Confidence            776554443322    2333321  1                1122333333344556665544    4555443    2


Q ss_pred             CCCHHHHHHHHHHHHhcCCH----HHHHHHHHHH
Q 005877          521 QRDYERAAEAYMHARSQSNA----QAMFNLGYMH  550 (672)
Q Consensus       521 ~~d~~~A~~~~~~A~~~~~~----~a~~~Lg~~y  550 (672)
                      .+ ..+++..+.+...-.+.    .|...||.+-
T Consensus       643 n~-~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          643 KG-LQSAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             SC-CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             CC-cHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence            22 26788888888764442    3677778774

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=90.76  E-value=3  Score=36.06  Aligned_cols=100  Identities=12%  Similarity=0.073  Sum_probs=68.5

Q ss_pred             HhCCCHHHHHHHHHHHHcCCCchhcH------HHHHHHHHHHHHcCCH----------HHHHHHHHHHHcCCCccCCHHH
Q 005877          347 ADNEEAGGHYNLGVMYYKGIGVKRDV------KLACKYFLVAANAGHQ----------KAFYQLAKMFHTGVGLKKNLHM  410 (672)
Q Consensus       347 ~~~~~~~a~~~Lg~~y~~g~g~~~~~------~~A~~~~~~A~~~~~~----------~a~~~L~~~y~~g~g~~~~~~~  410 (672)
                      +...+++.+........+    .++.      ++-++.|++|+..-++          ..+.+.+.. ..    .+|.++
T Consensus         8 ~~p~~yd~W~~yl~llE~----~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e----i~D~d~   78 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEK----NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA----IQEPDD   78 (161)
T ss_dssp             --CCSHHHHHHHHHHHHH----HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH----HHCGGG
T ss_pred             eCCCCHHHHHHHHHHHHH----cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH----hcCHHH
Confidence            445677777777777766    5565      7777888888763322          233344433 22    489999


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCC
Q 005877          411 ATALYKLVAERGPWSSLSRWALE--SYLKGDVGKAFLLYSRMAELGY  455 (672)
Q Consensus       411 A~~~~~~a~~~~~~~a~~~lg~~--~~~~g~~~~A~~~~~~a~~~g~  455 (672)
                      |...|+.++.....-+..+++.+  -..+|+..+|...+.+|+.++.
T Consensus        79 aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           79 ARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             CHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            99999999877533355555544  4478999999999999999874

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=90.14  E-value=9.8  Score=33.91  Aligned_cols=76  Identities=12%  Similarity=0.065  Sum_probs=35.2

Q ss_pred             hcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005877          370 RDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSR  449 (672)
Q Consensus       370 ~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~  449 (672)
                      |+++.|.+..+.   .++..-|..||.....    .++++-|..+|+++-+      +..+-..|...|+.++-...-+.
T Consensus        19 g~l~~A~e~a~~---l~~~~~Wk~Lg~~AL~----~gn~~lAe~cy~~~~D------~~~L~~Ly~~tg~~e~L~kla~i   85 (177)
T 3mkq_B           19 GNLDAALDEAKK---LNDSITWERLIQEALA----QGNASLAEMIYQTQHS------FDKLSFLYLVTGDVNKLSKMQNI   85 (177)
T ss_dssp             TCHHHHHHHHHH---HCCHHHHHHHHHHHHH----TTCHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH---hCCHHHHHHHHHHHHH----cCChHHHHHHHHHhCC------HHHHHHHHHHhCCHHHHHHHHHH
Confidence            455555544332   2455555555555554    5555555555554421      12223333344554444444444


Q ss_pred             HHHcCCHHH
Q 005877          450 MAELGYEVA  458 (672)
Q Consensus       450 a~~~g~~~a  458 (672)
                      |...|....
T Consensus        86 A~~~g~~n~   94 (177)
T 3mkq_B           86 AQTREDFGS   94 (177)
T ss_dssp             HHHTTCHHH
T ss_pred             HHHCccHHH
Confidence            444444333

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=88.03  E-value=25  Score=35.84  Aligned_cols=89  Identities=22%  Similarity=0.175  Sum_probs=55.6

Q ss_pred             HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC-----
Q 005877          283 EFLGEIYARGAGVERNYTKALEWLTHAARQ----QLY----SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----  349 (672)
Q Consensus       283 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~----~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~-----  349 (672)
                      ..||.+|..    .+++.+|.+.+.+..+.    ++.    +.+..-..+|..     .+|+.++..++.+|...     
T Consensus       103 ~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-----~~n~~k~k~~l~~a~~~~~ai~  173 (394)
T 3txn_A          103 ARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-----LSNLPKARAALTSARTTANAIY  173 (394)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHhhhccCC
Confidence            467788887    78888888777776642    221    222333344543     45888888888777432     


Q ss_pred             CCHHHH----HHHHHHHH-cCCCchhcHHHHHHHHHHHHH
Q 005877          350 EEAGGH----YNLGVMYY-KGIGVKRDVKLACKYFLVAAN  384 (672)
Q Consensus       350 ~~~~a~----~~Lg~~y~-~g~g~~~~~~~A~~~~~~A~~  384 (672)
                      .+|..+    ..-|.++. .    .+||.+|..+|-.+.+
T Consensus       174 ~~p~i~a~i~~~~Gi~~l~~----~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          174 CPPKVQGALDLQSGILHAAD----ERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhHHHHHh----ccCHHHHHHHHHHHHh
Confidence            233322    34466777 6    7888888888887753

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=85.76  E-value=21  Score=36.36  Aligned_cols=157  Identities=12%  Similarity=0.066  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCHH---HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh----
Q 005877          280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QLYS---AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD----  348 (672)
Q Consensus       280 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~---a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~----  348 (672)
                      .+.+.||.+|..    .+++++-..++.....-    +-+.   ....|=..+..    ..+..+.=++....+++    
T Consensus        20 ~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~----~~~~~~~~~~~~~~~~~~a~~   91 (394)
T 3txn_A           20 QGILQQGELYKQ----EGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLD----MDAGTGIEVQLCKDCIEWAKQ   91 (394)
T ss_dssp             HHHHHHHHHHHH----HTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTT----SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHHH
Confidence            345778888887    78887777777654321    1111   11122222221    12234444444444443    


Q ss_pred             CCCH----HHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCccCCHHHHHHHHH
Q 005877          349 NEEA----GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYK  416 (672)
Q Consensus       349 ~~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~  416 (672)
                      ....    .....||.+|..    .+++.+|.+.+.+..+.    ++    .+.+.....+|..    .+|..++..+|.
T Consensus        92 ~~r~flr~~l~~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~----~~n~~k~k~~l~  163 (394)
T 3txn_A           92 EKRTFLRQSLEARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA----LSNLPKARAALT  163 (394)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH----hccHHHHHHHHH
Confidence            2221    234578999998    89999999888887651    22    2344455566766    789999999999


Q ss_pred             HHHHcC-----ChhH----HHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 005877          417 LVAERG-----PWSS----LSRWALESY-LKGDVGKAFLLYSRMAE  452 (672)
Q Consensus       417 ~a~~~~-----~~~a----~~~lg~~~~-~~g~~~~A~~~~~~a~~  452 (672)
                      ++....     +|..    ...-|..+. ..++|.+|..+|-++.+
T Consensus       164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            885432     3432    233466777 79999999999988853

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=85.02  E-value=15  Score=36.21  Aligned_cols=20  Identities=25%  Similarity=0.524  Sum_probs=11.4

Q ss_pred             HHHHHhccCCHHHHHHHHHH
Q 005877          166 VAYTYLRQDMHDKAVKLYAE  185 (672)
Q Consensus       166 Lg~~y~~~~~~~~A~~~y~~  185 (672)
                      +..+|.+++++++|++....
T Consensus        39 l~~Ry~~~~~~~eAidlL~~   58 (312)
T 2wpv_A           39 IANRYVRSKSYEHAIELISQ   58 (312)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHH
Confidence            45555556666666655544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=84.52  E-value=2.7  Score=36.33  Aligned_cols=112  Identities=12%  Similarity=0.032  Sum_probs=72.9

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhCCCC
Q 005877          451 AELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNE----------HAALLIGDAYYYGRGT  520 (672)
Q Consensus       451 ~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----------~a~~~lG~~y~~g~g~  520 (672)
                      ..+.+++.+.++...+.+.|..         ..+ +-+++-+..|++|+..-++          ..+++.+.. .    .
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p---------~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~----e   72 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVP---------LSD-ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-K----A   72 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCS---------CCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-H----H
T ss_pred             eCCCCHHHHHHHHHHHHHcCCC---------chh-hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-H----H
Confidence            4566777777777777763321         112 3446777888887655443          234455544 2    3


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 005877          521 QRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKL  579 (672)
Q Consensus       521 ~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  579 (672)
                      .+|.++|.+.|+.+++.+..-|-.++++....-  -++|..+|++.+.+|+.+.|....
T Consensus        73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEi--Rqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           73 IQEPDDARDYFQMARANCKKFAFVHISFAQFEL--SQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HcccHHHHHHHHHHHhccCCCcHH
Confidence            489999999999997753323555555554221  179999999999999999887543

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=83.45  E-value=0.77  Score=30.25  Aligned_cols=22  Identities=14%  Similarity=0.357  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhh
Q 005877          628 TILTLFVCLLTVLYLRERQRRN  649 (672)
Q Consensus       628 ~~~~~~~~~~~~~~~r~~~~~~  649 (672)
                      .++.+++++++++|+|||+.++
T Consensus        21 vll~vi~~l~~~~~~RRR~~~~   42 (44)
T 2jwa_A           21 ILLVVVLGVVFGILIKRRQQKI   42 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHHhheehhhhhc
Confidence            3455555666678888776653

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=82.36  E-value=35  Score=33.51  Aligned_cols=108  Identities=15%  Similarity=0.109  Sum_probs=62.3

Q ss_pred             HhhhccCChHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-C
Q 005877          218 ALRKSRGEDDEAFQILEYQA----QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYAR-G  292 (672)
Q Consensus       218 ~~~~~~g~~~~Ai~~~~~aa----~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~-g  292 (672)
                      ..|.+++++++|++++...+    +.+...+-..|+.++.              +.|+++-..-+....-.|..++.. .
T Consensus        41 ~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llv--------------ev~~~~~~~~~~~~~~rl~~l~~~~p  106 (312)
T 2wpv_A           41 NRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLL--------------EVYDLAEVKVDDISVARLVRLIAELD  106 (312)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHH--------------HHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence            34567788999999888754    3466666666665553              223332222334444455555433 1


Q ss_pred             CCC---cCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Q 005877          293 AGV---ERNYTKALEWLTHAA--RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE  344 (672)
Q Consensus       293 ~g~---~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~  344 (672)
                      ...   ..-..+|++|-.+.-  ..|++.-+..+|..|..     .+++.+|..+|-
T Consensus       107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~-----e~~~~~A~~H~i  158 (312)
T 2wpv_A          107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLE-----GDFVYEAERYFM  158 (312)
T ss_dssp             TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHH-----TTCHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh-----cCCHHHHHHHHH
Confidence            000   122345555555432  34788888888888876     348888887775

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=81.01  E-value=6.1  Score=41.89  Aligned_cols=76  Identities=20%  Similarity=0.270  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCHHHHHHHHHH
Q 005877          390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMA--ELGYEVAQSNAAWI  465 (672)
Q Consensus       390 a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~--~~g~~~a~~nla~~  465 (672)
                      .+..||.+...    ...++.|..||.+|+...|.  .++..||.+....|+.-+|+-+|.+++  ...++.|..|+..+
T Consensus       154 ~l~~LGDL~RY----~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~  229 (497)
T 1ya0_A          154 CLVHLGDIARY----RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HHHHcccHHHH----HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence            45667777666    45678888888888888764  467888888888888888888888884  34578888888888


Q ss_pred             HHHh
Q 005877          466 LDKY  469 (672)
Q Consensus       466 l~~~  469 (672)
                      +++.
T Consensus       230 f~~~  233 (497)
T 1ya0_A          230 LSKA  233 (497)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	672
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	1e-19
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	1e-15
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	6e-13
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	1e-09
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	2e-06
d1klxa_	133	a.118.18.1 (A:) Cysteine rich protein B (HcpB) {He	9e-12
d1klxa_	133	a.118.18.1 (A:) Cysteine rich protein B (HcpB) {He	2e-04
d1klxa_	133	a.118.18.1 (A:) Cysteine rich protein B (HcpB) {He	0.002
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 86.9 bits (213), Expect = 1e-19
 Identities = 54/256 (21%), Positives = 102/256 (39%), Gaps = 13/256 (5%)

Query: 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLAC 376
              G+G         ++K++T+AK+YFEKA D +E  G +NLGV+YY+G GV++++K A 
Sbjct: 4   ELVGLGAKSY-----KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAA 58

Query: 377 KYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYL 436
            ++  A +  +    + L  ++++G G+ +N + A   Y    +       +      + 
Sbjct: 59  SFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHD 118

Query: 437 KGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW 496
               GK      + A   +  A                  G        +          
Sbjct: 119 ----GKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD 174

Query: 497 QASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGL 556
                G  +     G+ Y++G G  ++++ A   Y  A    N    FNLG M  +G+G+
Sbjct: 175 LKDSPGCFN----AGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGV 230

Query: 557 PLDLHLAKRYYDQALE 572
             +   A   + +  +
Sbjct: 231 TRNEKQAIENFKKGCK 246

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 75.3 bits (183), Expect = 1e-15
 Identities = 54/272 (19%), Positives = 100/272 (36%), Gaps = 13/272 (4%)

Query: 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYT 337
           +P+ +  LG    +    E+++T+A ++   A   +  S    +G LY +G GVEK N  
Sbjct: 1   DPKELVGLGAKSYK----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEK-NLK 55

Query: 338 KAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397
           KA  ++ KA D   + G + LG +YY G GV ++   A +Y+  A +  + +    L  +
Sbjct: 56  KAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGI 115

Query: 398 FHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEV 457
           +H G  + ++   A   +    +       +             K               
Sbjct: 116 YHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALAS------- 168

Query: 458 AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYG 517
               A  + D  G  +            +  + A + + +A E  N      +G   Y G
Sbjct: 169 -YDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 227

Query: 518 RGTQRDYERAAEAYMHARSQSNAQAMFNLGYM 549
            G  R+ ++A E +          A   L  +
Sbjct: 228 EGVTRNEKQAIENFKKGCKLGAKGACDILKQL 259

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 67.2 bits (162), Expect = 6e-13
 Identities = 61/275 (22%), Positives = 101/275 (36%), Gaps = 16/275 (5%)

Query: 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKL 182
           DP     LG        +E++  +A  Y   A +         +   Y +    +K +K 
Sbjct: 1   DPKELVGLGAKS----YKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLK- 55

Query: 183 YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNA 242
                     +      +  +      +       + +      ++A Q          A
Sbjct: 56  ---------KAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA 106

Query: 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKA 302
                +G  Y+ G + + RD  KA+ +F+KA D  +      LG +Y  G G  ++  KA
Sbjct: 107 EGCASLGGIYHDG-KVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKA 165

Query: 303 LEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMY 362
           L     A   +        G +Y  G G  K N+ +A   + KA + E  GG +NLG M 
Sbjct: 166 LASYDKACDLKDSPGCFNAGNMYHHGEGATK-NFKEALARYSKACELENGGGCFNLGAMQ 224

Query: 363 YKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397
           Y G GV R+ K A + F      G + A   L ++
Sbjct: 225 YNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQL 259

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 57.2 bits (136), Expect = 1e-09
 Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 12/257 (4%)

Query: 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVA 167
             +A    E A    +      LG LY  G   E+N  KA  ++  A +         + 
Sbjct: 18  FTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 77

Query: 168 YTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDD 227
             Y       +      +    A +                  G   + G  +    +  
Sbjct: 78  NLYYSGQGVSQNTNKALQYYSKACDLK--------YAEGCASLGGIYHDG--KVVTRDFK 127

Query: 228 EAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGE 287
           +A +         +      +G  Y  G RG  +D  KAL  + KA D  +       G 
Sbjct: 128 KAVEYFTKACDLNDGDGCTILGSLYDAG-RGTPKDLKKALASYDKACDLKDSPGCFNAGN 186

Query: 288 IYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA 347
           +Y  G G  +N+ +AL   + A   +       +G +   G GV + N  +A E F+K  
Sbjct: 187 MYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTR-NEKQAIENFKKGC 245

Query: 348 DNEEAGGHYNLGVMYYK 364
                G    L  +  K
Sbjct: 246 KLGAKGACDILKQLKIK 262

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 47.6 bits (111), Expect = 2e-06
 Identities = 25/215 (11%), Positives = 60/215 (27%), Gaps = 3/215 (1%)

Query: 77  EPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGM 136
           E ++   A   +    ++        G++    +  S+  + A++    A  +       
Sbjct: 51  EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCA 110

Query: 137 GMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI 196
            +    + GK        A     ++                              +   
Sbjct: 111 SLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYD 170

Query: 197 SKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGL 256
                   P   + G   + G       ++  A      + +  N G  + +G   Y G 
Sbjct: 171 KACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNG- 227

Query: 257 RGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYAR 291
            G+ R+  +A+  F K    G   + + L ++  +
Sbjct: 228 EGVTRNEKQAIENFKKGCKLGAKGACDILKQLKIK 262

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Length = 133

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

 Score = 60.9 bits (146), Expect = 9e-12
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 255 GLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL 314
           G   +++D  KA+ ++ KA +  E           +  +  + N  K  ++L+ A     
Sbjct: 1   GGGTVKKDLKKAIQYYVKACELNEMFGC------LSLVSNSQINKQKLFQYLSKACELN- 53

Query: 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKL 374
                     + +     KK+  KA +Y+ KA    +  G   LG   Y G GV ++ K 
Sbjct: 54  SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ 113

Query: 375 ACKYFLVAANAGHQKAFYQL 394
           A K F  A   G + A   L
Sbjct: 114 AVKTFEKACRLGSEDACGIL 133

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Length = 133

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 14/146 (9%)

Query: 401 GVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQS 460
           G  +KK+L  A   Y    E          +L S  + +  K F   S+           
Sbjct: 2   GGTVKKDLKKAIQYYVKACELN--EMFGCLSLVSNSQINKQKLFQYLSKAC--------- 50

Query: 461 NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGT 520
               +    G   +           +  + A   + +A    ++   L++G   Y G+G 
Sbjct: 51  ---ELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGV 107

Query: 521 QRDYERAAEAYMHARSQSNAQAMFNL 546
            ++ ++A + +  A    +  A   L
Sbjct: 108 VKNEKQAVKTFEKACRLGSEDACGIL 133

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Length = 133

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 18/136 (13%)

Query: 437 KGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW 496
           K D+ KA   Y +  EL       +         +            ++         ++
Sbjct: 6   KKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFY 65

Query: 497 QASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGL 556
                               G+  ++D  +AA+ Y  A   ++      LGY    G+G+
Sbjct: 66  ------------------ENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGV 107

Query: 557 PLDLHLAKRYYDQALE 572
             +   A + +++A  
Sbjct: 108 VKNEKQAVKTFEKACR 123

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 64/420 (15%), Positives = 104/420 (24%), Gaps = 60/420 (14%)

Query: 164 MAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSR 223
           M +A+   +    + A +   +L     +                + G      ++    
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPD----------------NTGVLLLLSSIHFQC 46

Query: 224 GEDDEAFQILE--YQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQS 281
              D +        +     A A   +G  Y    +              K        +
Sbjct: 47  RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN 106

Query: 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKE 341
           +           G  + Y  AL++       +                        KA  
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR--------LEEAKACY 158

Query: 342 YFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTG 401
                     A    NLG ++     +   +    K   V  +     A+  L  +    
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK--AVTLDPNFLDAYINLGNVLKE- 215

Query: 402 VGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEV 457
               +    A A Y       P         A   Y +G +  A   Y R  EL   +  
Sbjct: 216 ---ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272

Query: 458 AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYG 517
           A  N A  L + G                    A   +  A      HA  L   A    
Sbjct: 273 AYCNLANALKEKG----------------SVAEAEDCYNTALRLCPTHADSLNNLANIKR 316

Query: 518 RGTQRDYERAAEAYMHA--RSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP 575
              Q + E A   Y  A       A A  NL  + +  QG    L  A  +Y +A+ + P
Sbjct: 317 E--QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QG---KLQEALMHYKEAIRISP 370

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 36/286 (12%), Positives = 72/286 (25%), Gaps = 15/286 (5%)

Query: 298 NYTKALEWLTHAARQQLYSAYN-GIGYLYVKGYGVEKKNYTKAKEYFEKA--ADNEEAGG 354
            Y K  ++      +     +  G+  L       ++ +   A   FE A   D +    
Sbjct: 3   TYDKGYQFEEENPLRDHPQPFEEGLRRL-------QEGDLPNAVLLFEAAVQQDPKHMEA 55

Query: 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATAL 414
              LG    +    +     A +  L                  +  +  +    +   L
Sbjct: 56  WQYLGTTQAE-NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 114

Query: 415 YKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSM 474
               A     +     A  + L         L S    L  +     A  +     +  +
Sbjct: 115 RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 174

Query: 475 CMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHA 534
             G       +  +  A   +  A         L          G Q +   AA      
Sbjct: 175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234

Query: 535 RSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLP 580
                 ++ +NLG    +          A  ++ +AL +   ++ P
Sbjct: 235 LQPGYIRSRYNLGISCINLG----AHREAVEHFLEALNMQRKSRGP 276

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 0.001
 Identities = 31/244 (12%), Positives = 72/244 (29%), Gaps = 36/244 (14%)

Query: 338 KAKEYFEKA----ADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQ 393
           ++ +Y  +A    AD  ++        ++      ++ ++   +              Y 
Sbjct: 4   QSAQYLRQAEVLKADMTDS--KLGPAEVWTS----RQALQDLYQ------KMLVTDLEYA 51

Query: 394 LAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453
           L K     +      +  T L      R   ++ +R  +++ L   +  A   Y+++ + 
Sbjct: 52  LDKKVEQDLWNHAFKNQITTLQGQAKNR---ANPNRSEVQANLSLFLEAASGFYTQLLQE 108

Query: 454 GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDA 513
              V   +    +     G +   +                   +     +H  + +GD 
Sbjct: 109 LCTVFNVDLPCRVKSSQLGIISNKQ-------THTSAIVKPQSSSCSYICQHCLVHLGDI 161

Query: 514 YYYGRGTQRDYERAAEAY--MHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQAL 571
             Y    +    +A   Y        SN Q    L  +    +G   D      YY +++
Sbjct: 162 ARY----RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KG---DHLTTIFYYCRSI 213

Query: 572 EVDP 575
            V  
Sbjct: 214 AVKF 217

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	672
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.97
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.96
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.96
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.96
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	99.82
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	99.8
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.79
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.78
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.66
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.6
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.58
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.55
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.55
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.54
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.46
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.39
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.32
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.26
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.17
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.16
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.96
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.94
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.92
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.88
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.86
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.86
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.82
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.78
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.76
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.75
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.66
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.66
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.65
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.59
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.58
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.55
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.54
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.54
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.53
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.51
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.49
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.41
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.36
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.31
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.29
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.16
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.34
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.33
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.27
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.25
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.22
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.18
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	89.77
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	81.34

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.97  E-value=2.1e-28  Score=243.41  Aligned_cols=249  Identities=22%  Similarity=0.356  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHH
Q 005877          279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNL  358 (672)
Q Consensus       279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~L  358 (672)
                      |.+++.||..+..    .+|+++|++||+++++.|++.+++.||.+|..|.++++ |+.+|..+++++++.+++.++..|
T Consensus         2 p~~~~~lG~~~~~----~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~-d~~~a~~~~~~a~~~~~~~a~~~l   76 (265)
T d1ouva_           2 PKELVGLGAKSYK----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLNYSNGCHLL   76 (265)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcch-hHHHHHHhhcccccccccchhhcc
Confidence            4444445544444    44555555555555544555555555555554444443 455555555555555555555555


Q ss_pred             HHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 005877          359 GVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG  438 (672)
Q Consensus       359 g~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g  438 (672)
                      |.++..|..+..+.++|..+|+++.+.+...+..+++..+..+.....+...|+.++.+..+.+++.++..+|..+....
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~  156 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR  156 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCC
Confidence            55444444444455555555555555555555555555555444444555555555554444433333333333221100


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 005877          439 DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR  518 (672)
Q Consensus       439 ~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~  518 (672)
                                                                  ....+...+..++++++++++++++++||.+|..|.
T Consensus       157 --------------------------------------------~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~  192 (265)
T d1ouva_         157 --------------------------------------------GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGE  192 (265)
T ss_dssp             --------------------------------------------SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             --------------------------------------------CcccccccchhhhhccccccccccccchhhhcccCc
Confidence                                                        002234455556666667777788888888888888


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          519 GTQRDYERAAEAYMHARSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       519 g~~~d~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      |+.+|+++|+.||++|++.+++.++++||.||++|.|+.+|+.+|++||++|++.++.
T Consensus       193 ~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         193 GATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             ccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            8899999999999999999999999999999999999999999999999999988765

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.9e-26  Score=236.99  Aligned_cols=365  Identities=16%  Similarity=0.111  Sum_probs=213.7

Q ss_pred             HHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHH
Q 005877           89 YYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKM  164 (672)
Q Consensus        89 ~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~  164 (672)
                      +.+|..++.       .|++++|+..|+++  .+|.++.+++.+|.+|..    .+++++|+.+|+++++  ++++.++.
T Consensus         3 l~la~~~~~-------~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~   71 (388)
T d1w3ba_           3 MELAHREYQ-------AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ----CRRLDRSAHFSTLAIKQNPLLAEAYS   71 (388)
T ss_dssp             CTHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            345666554       58899999999995  456889999999999998    8899999999999876  68899999


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc--CCH
Q 005877          165 AVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNA  242 (672)
Q Consensus       165 ~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~--~~~  242 (672)
                      .+|.+|...|++++|+..+.++.+..+...                ..................+..........  ...
T Consensus        72 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (388)
T d1w3ba_          72 NLGNVYKERGQLQEAIEHYRHALRLKPDFI----------------DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY  135 (388)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHhhhhccccccccccccccccccccc----------------cccccccccccccccccccccccccccccccccc
Confidence            999999999999999999998876532211                00111222222333333333333332222  233


Q ss_pred             HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 005877          243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAY  318 (672)
Q Consensus       243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~  318 (672)
                      ......+......     .....+...+.+.+.  +.++.+...+|.++..    .+++++|..+++++++.  +++.++
T Consensus       136 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~  206 (388)
T d1w3ba_         136 CVRSDLGNLLKAL-----GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVTLDPNFLDAY  206 (388)
T ss_dssp             HHHHHHHHHHHTT-----SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccccccccccccc-----chhhhhHHHHHHhhccCcchhHHHHhhcccccc----cCcHHHHHHHHHHHHHhCcccHHHH
Confidence            3444444443333     244445444444443  2345555555555554    55555555555555433  244455


Q ss_pred             HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHH
Q 005877          319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQL  394 (672)
Q Consensus       319 ~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L  394 (672)
                      ..+|.++..     .+++++|+..|+++.+.  ..+..++.+|.++..    .+++++|+.+|+++++.  +++.++..+
T Consensus       207 ~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l  277 (388)
T d1w3ba_         207 INLGNVLKE-----ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTYRRAIELQPHFPDAYCNL  277 (388)
T ss_dssp             HHHHHHHHT-----TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred             HHHhhhhhc-----cccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            555555543     33455555555554432  244444455555544    44555555555554442  234444444


Q ss_pred             HHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 005877          395 AKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSM  474 (672)
Q Consensus       395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~  474 (672)
                      |.++..    .+++++|+.+|+++....+                              ........++.++..      
T Consensus       278 ~~~~~~----~~~~~~A~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~------  317 (388)
T d1w3ba_         278 ANALKE----KGSVAEAEDCYNTALRLCP------------------------------THADSLNNLANIKRE------  317 (388)
T ss_dssp             HHHHHH----HSCHHHHHHHHHHHHHHCT------------------------------TCHHHHHHHHHHHHT------
T ss_pred             HHHHHH----cCCHHHHHHHHHhhhccCC------------------------------ccchhhhHHHHHHHH------
Confidence            444444    4444444444444444432                              233444444444443      


Q ss_pred             ccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q 005877          475 CMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMH  550 (672)
Q Consensus       475 ~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y  550 (672)
                                .+++++|+.++++++  .++++.+++++|.+|.    ..+++++|+.+|++|++.  +++.++++||.+|
T Consensus       318 ----------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~  383 (388)
T d1w3ba_         318 ----------QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ----QQGKLQEALMHYKEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             ----------TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH----TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             ----------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                      344555555555543  3456777888888888    788888888888888774  6788888888888


Q ss_pred             Hc
Q 005877          551 EH  552 (672)
Q Consensus       551 ~~  552 (672)
                      ..
T Consensus       384 ~~  385 (388)
T d1w3ba_         384 KE  385 (388)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.96  E-value=5.6e-27  Score=232.91  Aligned_cols=256  Identities=25%  Similarity=0.296  Sum_probs=119.8

Q ss_pred             cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCHHHHH
Q 005877           85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKM  164 (672)
Q Consensus        85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~  164 (672)
                      |.+++.+|.....       .+|+++|+++|+++++.|++.+++.||.+|..|.++.+|+.+|..++++++..+++.+..
T Consensus         2 p~~~~~lG~~~~~-------~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~   74 (265)
T d1ouva_           2 PKELVGLGAKSYK-------EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCH   74 (265)
T ss_dssp             HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhh
Confidence            4445555544332       445555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHH
Q 005877          165 AVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGA  244 (672)
Q Consensus       165 ~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a  244 (672)
                      .||.++.....                                              ...+.+.|+.+++.+++.|...+
T Consensus        75 ~l~~~~~~~~~----------------------------------------------~~~~~~~a~~~~~~a~~~g~~~a  108 (265)
T d1ouva_          75 LLGNLYYSGQG----------------------------------------------VSQNTNKALQYYSKACDLKYAEG  108 (265)
T ss_dssp             HHHHHHHHTSS----------------------------------------------SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccccccccccc----------------------------------------------cchhhHHHHHHHhhhhhhhhhhH
Confidence            55444432100                                              01112222233333334444444


Q ss_pred             HHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005877          245 MYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYL  324 (672)
Q Consensus       245 ~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~  324 (672)
                      ...||..+..+ .....+...|+.++.+..+.+++.+++.||.+|..|.+...+...+..+++++++.+++.+++.||.+
T Consensus       109 ~~~l~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~  187 (265)
T d1ouva_         109 CASLGGIYHDG-KVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNM  187 (265)
T ss_dssp             HHHHHHHHHHC-SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhhcccccCC-CcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhh
Confidence            44444444443 23334444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005877          325 YVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLA  395 (672)
Q Consensus       325 y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L~  395 (672)
                      |..|.++.+ |+++|+.+|+++++.+++.++++||.+|..|.|+.+|+++|++||++|++.|+..|...|.
T Consensus       188 y~~g~~~~~-d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~~l~  257 (265)
T d1ouva_         188 YHHGEGATK-NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK  257 (265)
T ss_dssp             HHHTCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cccCccccc-chhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            444444433 4444444444444444444444444444444444444444444444444444444444443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-25  Score=231.44  Aligned_cols=351  Identities=18%  Similarity=0.117  Sum_probs=279.9

Q ss_pred             HHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccch
Q 005877          129 VLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPI  206 (672)
Q Consensus       129 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~  206 (672)
                      .||..+..    .|++++|+.+|+++++  ++++.++..+|.+|...|++++|+.+|+++++.                 
T Consensus         4 ~la~~~~~----~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----------------   62 (388)
T d1w3ba_           4 ELAHREYQ----AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-----------------   62 (388)
T ss_dssp             THHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence            46666666    7788888888888765  677888888888888888888888888887663                 


Q ss_pred             hcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHH
Q 005877          207 RIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEF  284 (672)
Q Consensus       207 ~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~  284 (672)
                                                     ++.++.++..+|.+|...     +++++|+..+.++.+.  ........
T Consensus        63 -------------------------------~p~~~~a~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~  106 (388)
T d1w3ba_          63 -------------------------------NPLLAEAYSNLGNVYKER-----GQLQEAIEHYRHALRLKPDFIDGYIN  106 (388)
T ss_dssp             -------------------------------CTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             -------------------------------CCCCHHHHHHHHHHhhhh-----cccccccccccccccccccccccccc
Confidence                                           345778888888888877     4888888888888774  45566666


Q ss_pred             HHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 005877          285 LGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGV  360 (672)
Q Consensus       285 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~  360 (672)
                      .+.....    ......+..........  ...............     ......+...+.+....  +++.+...+|.
T Consensus       107 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  177 (388)
T d1w3ba_         107 LAAALVA----AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-----LGRLEEAKACYLKAIETQPNFAVAWSNLGC  177 (388)
T ss_dssp             HHHHHHH----HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccccccc----cccccccccccccccccccccccccccccccccc-----cchhhhhHHHHHHhhccCcchhHHHHhhcc
Confidence            6666655    44555555555544433  344555555555553     34778888888877654  57888899999


Q ss_pred             HHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHh
Q 005877          361 MYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYL  436 (672)
Q Consensus       361 ~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~  436 (672)
                      ++..    .+++++|..+++++++.  +++.++..+|.++..    .+++++|+..|+++.+..+  +..+..+|.++..
T Consensus       178 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  249 (388)
T d1w3ba_         178 VFNA----QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE----ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE  249 (388)
T ss_dssp             HHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cccc----cCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhc----cccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH
Confidence            9988    88999999999998774  577888999999887    8899999999999888764  5567888999999


Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHH
Q 005877          437 KGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGD  512 (672)
Q Consensus       437 ~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~  512 (672)
                      .|++++|+..|+++++.  +++.++.++|.++..                .+++++|+..++++..  +.++..+..+|.
T Consensus       250 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  313 (388)
T d1w3ba_         250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE----------------KGSVAEAEDCYNTALRLCPTHADSLNNLAN  313 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----------------HSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------------cCCHHHHHHHHHhhhccCCccchhhhHHHH
Confidence            99999999999999765  578889999999888                7788999999997654  466889999999


Q ss_pred             HHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          513 AYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       513 ~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      ++.    ..+++++|+.+|+++++  ++++.++++||.+|..    .|++++|+.+|++|++++|+.
T Consensus       314 ~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         314 IKR----EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             HHH----TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHTTCTTC
T ss_pred             HHH----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Confidence            999    89999999999999987  4789999999999988    899999999999999999985

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=99.82  E-value=6.1e-20  Score=160.74  Aligned_cols=130  Identities=27%  Similarity=0.329  Sum_probs=90.8

Q ss_pred             CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCH
Q 005877          257 RGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNY  336 (672)
Q Consensus       257 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~  336 (672)
                      .||++|+++|++||+++++.+++.+++.||..      ++.+.++|++||+++++.+++.+++.||.+|..|.++++ |+
T Consensus         3 ~gv~kd~~~A~~~~~kaa~~g~~~a~~~l~~~------~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~-d~   75 (133)
T d1klxa_           3 GTVKKDLKKAIQYYVKACELNEMFGCLSLVSN------SQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK-DL   75 (133)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCTTHHHHHHTC------TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC-CH
T ss_pred             CCcccCHHHHHHHHHHHHHCCChhhhhhhccc------cccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccch-hh
Confidence            56667777777777777777777777666532      256677777777777777777777777777777766655 77


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHHH
Q 005877          337 TKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQ  393 (672)
Q Consensus       337 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~  393 (672)
                      ++|++||+++++.+++.++++||.+|..|.|+.+|..+|+.||++|++.|++.+.+.
T Consensus        76 ~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~A~~~  132 (133)
T d1klxa_          76 RKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGI  132 (133)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHHHHHh
Confidence            777777777777777777777777777777777777777777777777777766554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=99.80  E-value=1.3e-19  Score=158.56  Aligned_cols=131  Identities=22%  Similarity=0.264  Sum_probs=123.2

Q ss_pred             CCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhc
Q 005877          292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRD  371 (672)
Q Consensus       292 g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~  371 (672)
                      |.||++|+++|+.||+++++.+++.+++.||..+       ..|.++|+++|+++++.+++.+++.||.+|..|.++..|
T Consensus         2 G~gv~kd~~~A~~~~~kaa~~g~~~a~~~l~~~~-------~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d   74 (133)
T d1klxa_           2 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNS-------QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKD   74 (133)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHTTCTTHHHHHHTCT-------TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCC
T ss_pred             CCCcccCHHHHHHHHHHHHHCCChhhhhhhcccc-------ccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchh
Confidence            6789999999999999999999999999998543       249999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHH
Q 005877          372 VKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSR  429 (672)
Q Consensus       372 ~~~A~~~~~~A~~~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~  429 (672)
                      +++|++||+++++.+++.+.++||.+|..|.|+.+|.++|+.||++|++.+++.+...
T Consensus        75 ~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~A~~~  132 (133)
T d1klxa_          75 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGI  132 (133)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHHHHHh
Confidence            9999999999999999999999999999999999999999999999999998887653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7e-18  Score=171.26  Aligned_cols=239  Identities=13%  Similarity=0.031  Sum_probs=148.2

Q ss_pred             HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHH
Q 005877          282 MEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYN  357 (672)
Q Consensus       282 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~  357 (672)
                      .+..|..+..    .|++++|+..|+++++.  .++.++..+|.+|..     .+++++|+.+|+++++.  +++.++++
T Consensus        22 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~   92 (323)
T d1fcha_          22 PFEEGLRRLQ----EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE-----NEQELLAISALRRCLELKPDNQTALMA   92 (323)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCChHHHHHHHHhhhcccccccccccc
Confidence            3456666666    66666666666666654  255566666666654     34666666666666554  35566666


Q ss_pred             HHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHH--HHHHHHHcCCCccCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005877          358 LGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFY--QLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESY  435 (672)
Q Consensus       358 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~--~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~  435 (672)
                      +|.+|..    .+++++|++.|+++....+.....  ........                     ............+.
T Consensus        93 la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~  147 (323)
T d1fcha_          93 LAVSFTN----ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG---------------------AGLGPSKRILGSLL  147 (323)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHHHHHTSTTTGGGCC------------------------------------CTTHHHH
T ss_pred             ccccccc----cccccccccchhhHHHhccchHHHHHhhhhhhhh---------------------cccccchhhHHHHH
Confidence            6666665    566666666666655533211000  00000000                     00000000111122


Q ss_pred             hcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHH
Q 005877          436 LKGDVGKAFLLYSRMAELG----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALL  509 (672)
Q Consensus       436 ~~g~~~~A~~~~~~a~~~g----~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~  509 (672)
                      ..+.+.+|+..|.++++..    ++.++.++|.++..                .+++++|+.++++++  .++++.++++
T Consensus       148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~----------------~~~~~~A~~~~~~al~~~p~~~~~~~~  211 (323)
T d1fcha_         148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----------------SGEYDKAVDCFTAALSVRPNDYLLWNK  211 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH----------------HHHHhhhhcccccccccccccccchhh
Confidence            3345566666666665543    34556666666665                556777777777653  4567889999


Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          510 IGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       510 lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      +|.+|.    ..+++++|+++|+++++  ++++.++++||.+|..    .|++++|+++|++|++++|+..
T Consensus       212 lg~~~~----~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         212 LGATLA----NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN----LGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             HHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHTC-
T ss_pred             hhhccc----ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCcCh
Confidence            999999    88999999999999987  4789999999999988    8999999999999999987754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5e-17  Score=164.86  Aligned_cols=238  Identities=13%  Similarity=0.053  Sum_probs=146.0

Q ss_pred             cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCH
Q 005877           85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNI  160 (672)
Q Consensus        85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~  160 (672)
                      ....|..|..++.       .|++++|+..|+++.  +|.++.+++.+|.+|..    .+++++|+.+|.++++  +.++
T Consensus        19 ~~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~   87 (323)
T d1fcha_          19 HPQPFEEGLRRLQ-------EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE----NEQELLAISALRRCLELKPDNQ   87 (323)
T ss_dssp             CSSHHHHHHHHHH-------TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHhhhccccccc
Confidence            4456889999885       699999999999965  45889999999999999    9999999999999986  7899


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHc-
Q 005877          161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-  239 (672)
Q Consensus       161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~-  239 (672)
                      ..++.+|.+|...+++++|+..|++++...+............. ..................+.+.+|+..+++++.. 
T Consensus        88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  166 (323)
T d1fcha_          88 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA-GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD  166 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccccccccccchhhHHHhccchHHHHHhhhhhh-hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999876544321110000000 0000000001111122333444555555554432 


Q ss_pred             ---CCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 005877          240 ---GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--  312 (672)
Q Consensus       240 ---~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--  312 (672)
                         .++.++..+|.++...     +++++|+.+|++++.  ++++.+++.+|.+|..    .+++++|+.+|+++++.  
T Consensus       167 p~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         167 PTSIDPDVQCGLGVLFNLS-----GEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN----GNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             TTSCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCT
T ss_pred             hcccccccchhhHHHHHHH-----HHHhhhhcccccccccccccccchhhhhhcccc----cccchhHHHHHHHHHHHhh
Confidence               1344555555555544     255555555555544  2345555555555555    55555555555555542  


Q ss_pred             CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Q 005877          313 QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD  348 (672)
Q Consensus       313 ~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~  348 (672)
                      +++.+++.||.+|..     .|++++|+.+|++|++
T Consensus       238 ~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         238 GYIRSRYNLGISCIN-----LGAHREAVEHFLEALN  268 (323)
T ss_dssp             TCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHH
Confidence            345555555555553     3455555555555544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=4.1e-15  Score=145.25  Aligned_cols=226  Identities=18%  Similarity=0.071  Sum_probs=143.7

Q ss_pred             CHHHHHHHHHHHHhC------CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccC
Q 005877          335 NYTKAKEYFEKAADN------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKK  406 (672)
Q Consensus       335 ~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~  406 (672)
                      ..+.|+..+++++..      ..+.+++++|.+|..    .|++++|+..|+++++  ++++.+++++|.+|..    .+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~----~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~----~g   85 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ----AG   85 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TT
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH----HH
Confidence            345566666666543      235577777888877    7788888888888766  4577778888888876    77


Q ss_pred             CHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccCCCCCC
Q 005877          407 NLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFC  482 (672)
Q Consensus       407 ~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~~~~~~~  482 (672)
                      ++++|+..|+++++..|  +.++.++|.++...|++++|+..|+++++..  +......++....+              
T Consensus        86 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--------------  151 (259)
T d1xnfa_          86 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK--------------  151 (259)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------
T ss_pred             HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH--------------
Confidence            88888888888877764  5567778888888888888888888886654  44555555554443              


Q ss_pred             CchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCH
Q 005877          483 TDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDL  560 (672)
Q Consensus       483 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~  560 (672)
                        .+..+.+..+........+......+...+.......+.+..+...+..+..  ...+.++++||.+|..    .|++
T Consensus       152 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~  225 (259)
T d1xnfa_         152 --LDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS----LGDL  225 (259)
T ss_dssp             --HCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH----TTCH
T ss_pred             --hhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH----CCCH
Confidence              2222233333333333332222233333333111112223334443333332  3456789999999988    8999


Q ss_pred             HHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 005877          561 HLAKRYYDQALEVDPAAKLPVTLALTSL  588 (672)
Q Consensus       561 ~~A~~~~~~A~~~~~~~~~~~~~~~~~~  588 (672)
                      ++|+.+|++|+..+|+..++...++..+
T Consensus       226 ~~A~~~~~~al~~~p~~~~~~~~a~~~L  253 (259)
T d1xnfa_         226 DSATALFKLAVANNVHNFVEHRYALLEL  253 (259)
T ss_dssp             HHHHHHHHHHHTTCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999999999999999877665555433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.9e-14  Score=145.07  Aligned_cols=229  Identities=7%  Similarity=-0.016  Sum_probs=151.9

Q ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHH
Q 005877          315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKA  390 (672)
Q Consensus       315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a  390 (672)
                      .+++..+|.++..     ++.+++|+..+++|++.  ++..++++.|.++...   .+++++|+.+|+++++  +.+..+
T Consensus        43 ~~a~~~~~~~~~~-----~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l---~~~~~eal~~~~~al~~~p~~~~a  114 (315)
T d2h6fa1          43 RDVYDYFRAVLQR-----DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL---QKDLHEEMNYITAIIEEQPKNYQV  114 (315)
T ss_dssp             HHHHHHHHHHHHH-----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHh-----CCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHh---CcCHHHHHHHHHHHHHHHHhhhhH
Confidence            4455566666654     34566677777776665  3666677777666551   2356777777777655  346677


Q ss_pred             HHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877          391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL  466 (672)
Q Consensus       391 ~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l  466 (672)
                      ++++|.++..    .+++++|+.+++++++..|  ..++.++|.++...|++++|+..++++++.  .+..++++++.++
T Consensus       115 ~~~~~~~~~~----l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l  190 (315)
T d2h6fa1         115 WHHRRVLVEW----LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI  190 (315)
T ss_dssp             HHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhHHHHh----hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHH
Confidence            7777777766    6777777777777776663  456667777777777777777777777665  4778888888887


Q ss_pred             HHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----CCH
Q 005877          467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ----SNA  540 (672)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~  540 (672)
                      .+.+.          ....+.+++|+..+.+++  .+++..+++++|.++.     ...+.++...++++.+.    .++
T Consensus       191 ~~~~~----------~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-----~~~~~~~~~~~~~~~~l~~~~~~~  255 (315)
T d2h6fa1         191 SNTTG----------YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-----DRGLSKYPNLLNQLLDLQPSHSSP  255 (315)
T ss_dssp             HHTTC----------SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-----TTCGGGCHHHHHHHHHHTTTCCCH
T ss_pred             HHccc----------cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-----hcChHHHHHHHHHHHHhCCCcCCH
Confidence            76322          334677899999999874  5677999999999876     33467788888887653    467


Q ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877          541 QAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE  572 (672)
Q Consensus       541 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  572 (672)
                      .++..++.+|....  .++.+.+...+++|++
T Consensus       256 ~~~~~l~~~y~~~~--~~~~~~~~~~~~ka~~  285 (315)
T d2h6fa1         256 YLIAFLVDIYEDML--ENQCDNKEDILNKALE  285 (315)
T ss_dssp             HHHHHHHHHHHHHH--HTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hcCHHHHHHHHHHHHH
Confidence            77888888775421  2233334444444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.3e-14  Score=141.17  Aligned_cols=228  Identities=11%  Similarity=0.064  Sum_probs=177.0

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHH
Q 005877          159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ  238 (672)
Q Consensus       159 ~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~  238 (672)
                      ..+++..+|.++...+.+++|+..|+++++                                                .+
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~------------------------------------------------ln   73 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------------------------------------LN   73 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------------------------------------HC
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHH------------------------------------------------HC
Confidence            345566667777777777888888877766                                                34


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC
Q 005877          239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QL  314 (672)
Q Consensus       239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~  314 (672)
                      +.+..++...|.++...+    +++++|+.+++++++  +.+..+++.+|.++..    .+++++|+.+|+++++.  .+
T Consensus        74 P~~~~a~~~r~~~l~~l~----~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~----l~~~~eAl~~~~kal~~dp~n  145 (315)
T d2h6fa1          74 AANYTVWHFRRVLLKSLQ----KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW----LRDPSQELEFIADILNQDAKN  145 (315)
T ss_dssp             TTCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTC
T ss_pred             CCChHHHHHHHHHHHHhC----cCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh----hccHHHHHHHHhhhhhhhhcc
Confidence            568899999999988753    579999999999987  5789999999999999    99999999999999976  48


Q ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCC--CchhcHHHHHHHHHHHHH--cCCH
Q 005877          315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGI--GVKRDVKLACKYFLVAAN--AGHQ  388 (672)
Q Consensus       315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~--g~~~~~~~A~~~~~~A~~--~~~~  388 (672)
                      ..++.++|.++..     .+++++|+.+|+++++.  .+..+++++|.++....  ...+++++|+..+.++++  +++.
T Consensus       146 ~~a~~~~~~~~~~-----~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~  220 (315)
T d2h6fa1         146 YHAWQHRQWVIQE-----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE  220 (315)
T ss_dssp             HHHHHHHHHHHHH-----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             hHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCch
Confidence            9999999999986     56899999999999887  48899999999876522  235678999999999987  4578


Q ss_pred             HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC----hhHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 005877          389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----WSSLSRWALESYL--KGDVGKAFLLYSRMAE  452 (672)
Q Consensus       389 ~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~--~g~~~~A~~~~~~a~~  452 (672)
                      .++++++.++..     ...+++...++++++..+    +..+..++..+..  .++.+.+...+.++.+
T Consensus       221 ~~~~~l~~ll~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~  285 (315)
T d2h6fa1         221 SAWNYLKGILQD-----RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE  285 (315)
T ss_dssp             HHHHHHHHHHTT-----TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-----cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            899999988764     446778888888877663    2345555555533  2444455555555543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.3e-13  Score=134.45  Aligned_cols=214  Identities=14%  Similarity=0.040  Sum_probs=132.4

Q ss_pred             hHHHHHHHHHHHHh------CCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHH
Q 005877          107 VMEEATSEVESAAM------EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDK  178 (672)
Q Consensus       107 ~~~~A~~~~~~a~~------~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~  178 (672)
                      ..+.|+..+++...      +..+.+++.+|.+|..    .+++++|+.+|++++.  ++++.+++.+|.+|...|++++
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~----~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~   89 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   89 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHH
Confidence            34445555555332      2345788899999998    8899999999999876  7899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005877          179 AVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRG  258 (672)
Q Consensus       179 A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~  258 (672)
                      |+..|+++++.                                                ++.++.+++.+|.+|...   
T Consensus        90 A~~~~~~al~~------------------------------------------------~p~~~~a~~~lg~~~~~~---  118 (259)
T d1xnfa_          90 AYEAFDSVLEL------------------------------------------------DPTYNYAHLNRGIALYYG---  118 (259)
T ss_dssp             HHHHHHHHHHH------------------------------------------------CTTCTHHHHHHHHHHHHT---
T ss_pred             hhhhhhHHHHH------------------------------------------------HhhhhhhHHHHHHHHHHH---
Confidence            99999998774                                                345667778888888776   


Q ss_pred             cccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCH
Q 005877          259 LRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNY  336 (672)
Q Consensus       259 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~  336 (672)
                        +++++|++.|+++++.  .++.....++..+..    .+..+.+..................+...+.. .....+..
T Consensus       119 --g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  191 (259)
T d1xnfa_         119 --GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK----LDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG-NISEQTLM  191 (259)
T ss_dssp             --TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT-SSCHHHHH
T ss_pred             --hhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH----hhhHHHHHHHHHHhhccchhhhhhhHHHHHHH-HHHHHHHH
Confidence              3788888888888764  456666666666554    33333333333333322211111122222221 00001122


Q ss_pred             HHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC
Q 005877          337 TKAKEYFEKAAD--NEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG  386 (672)
Q Consensus       337 ~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  386 (672)
                      +.+...+..+..  ...+.++++||.+|..    .|++++|+.+|++|+...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         192 ERLKADATDNTSLAEHLSETNFYLGKYYLS----LGDLDSATALFKLAVANN  239 (259)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhhcCcccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcC
Confidence            222222222222  1345567777777777    777777777777777644

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=5.3e-13  Score=135.32  Aligned_cols=256  Identities=13%  Similarity=0.020  Sum_probs=198.7

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---C----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--
Q 005877          279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ---L----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--  349 (672)
Q Consensus       279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~----~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--  349 (672)
                      ++.....|.++..    .|++++|+.+|+++++..   +    ..++..+|.+|..     .|++++|+.+|+++++.  
T Consensus        12 ae~~~lrA~~~~~----~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~a~~~~~   82 (366)
T d1hz4a_          12 AEFNALRAQVAIN----DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-----KGELTRSLALMQQTEQMAR   82 (366)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Confidence            4455566777777    888899999988888742   1    3467788888885     67899999999888763  


Q ss_pred             --C----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHcCCCccCCHHHHHH
Q 005877          350 --E----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG----------HQKAFYQLAKMFHTGVGLKKNLHMATA  413 (672)
Q Consensus       350 --~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----------~~~a~~~L~~~y~~g~g~~~~~~~A~~  413 (672)
                        +    ...++.+++.++..    .+++..+...+.+++...          .......+|.++..    .+++++|..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~a~~  154 (366)
T d1hz4a_          83 QHDVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEA  154 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH----hcchhhhHH
Confidence              2    24567788888888    889999999998886521          23466778888887    899999999


Q ss_pred             HHHHHHHcCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCCcccC
Q 005877          414 LYKLVAERGP-------WSSLSRWALESYLKGDVGKAFLLYSRMAELG---------YEVAQSNAAWILDKYGEGSMCMG  477 (672)
Q Consensus       414 ~~~~a~~~~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g---------~~~a~~nla~~l~~~~~~~~~~~  477 (672)
                      +++++.+..+       ..+....+..+...+++.++...+.++....         ...+...++.++..         
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  225 (366)
T d1hz4a_         155 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM---------  225 (366)
T ss_dssp             HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh---------
Confidence            9999987642       2356777888889999999999999885531         23345566667666         


Q ss_pred             CCCCCCchHhHHHHHHHHHHHHhCCC------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--------CCHHHH
Q 005877          478 ESGFCTDAERHQCAHSLWWQASEQGN------EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--------SNAQAM  543 (672)
Q Consensus       478 ~~~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--------~~~~a~  543 (672)
                             .++.++|..+++++.....      .....++|.+|.    ..+++++|..++++++..        ..+.++
T Consensus       226 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  294 (366)
T d1hz4a_         226 -------TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI----LLGEFEPAEIVLEELNENARSLRLMSDLNRNL  294 (366)
T ss_dssp             -------TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -------cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence                   6688999999998755422      456778999999    889999999999998742        246789


Q ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877          544 FNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP  575 (672)
Q Consensus       544 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  575 (672)
                      ..+|.+|..    .|++++|++++++|+++.+
T Consensus       295 ~~la~~~~~----~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         295 LLLNQLYWQ----AGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHH----HTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----CCCHHHHHHHHHHHHHHhh
Confidence            999999987    8999999999999998754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=7.8e-13  Score=134.04  Aligned_cols=263  Identities=9%  Similarity=-0.032  Sum_probs=204.8

Q ss_pred             ChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhh
Q 005877          123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN-----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL  195 (672)
Q Consensus       123 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~-----~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~  195 (672)
                      +++.....|.++..    .|++++|+.+|+++++  +.+     ..++..+|.+|...|++++|+.+|+++++..+... 
T Consensus        11 ~ae~~~lrA~~~~~----~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~-   85 (366)
T d1hz4a_          11 HAEFNALRAQVAIN----DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD-   85 (366)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-
T ss_pred             hHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-
Confidence            35566777888888    8999999999999987  333     35788899999999999999999999987653210 


Q ss_pred             ccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 005877          196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD  275 (672)
Q Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~  275 (672)
                                                   +            ......++..++.++...     +++..|...+.+++.
T Consensus        86 -----------------------------~------------~~~~~~~~~~~~~~~~~~-----~~~~~a~~~~~~al~  119 (366)
T d1hz4a_          86 -----------------------------V------------WHYALWSLIQQSEILFAQ-----GFLQTAWETQEKAFQ  119 (366)
T ss_dssp             -----------------------------C------------HHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHH
T ss_pred             -----------------------------c------------hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence                                         0            001245667788888777     488999999888875


Q ss_pred             c----------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHcCCCCCcCCHHH
Q 005877          276 K----------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-------LYSAYNGIGYLYVKGYGVEKKNYTK  338 (672)
Q Consensus       276 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~~  338 (672)
                      .          ........+|.++..    .++++.+..+++++.+..       ...+...++..+..     .+++.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  190 (366)
T d1hz4a_         120 LINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA-----RGDLDN  190 (366)
T ss_dssp             HHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH-----HTCHHH
T ss_pred             HhHhcccchhhHHHHHHHHHHHHHHH----hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh-----hhhHHH
Confidence            2          124567788999998    899999999999988642       45567777877775     468999


Q ss_pred             HHHHHHHHHhC----C-----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCC
Q 005877          339 AKEYFEKAADN----E-----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG------HQKAFYQLAKMFHTGVG  403 (672)
Q Consensus       339 A~~~~~~a~~~----~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~L~~~y~~g~g  403 (672)
                      +..++.++...    +     ...+...+|.++..    .+++++|..+++++.+..      ......++|.++..   
T Consensus       191 a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---  263 (366)
T d1hz4a_         191 ARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL---  263 (366)
T ss_dssp             HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH---
Confidence            99999888653    1     24466778888888    899999999999987632      24667789999987   


Q ss_pred             ccCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          404 LKKNLHMATALYKLVAERG--------PWSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       404 ~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                       .+++++|+.++++++...        ...++..+|.++...|++++|+..+++|++.
T Consensus       264 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         264 -LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence             899999999999997542        1346888999999999999999999999775

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=5.7e-14  Score=142.89  Aligned_cols=245  Identities=8%  Similarity=-0.021  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHHHHHHHcC--CC----CcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCC
Q 005877          263 RTKALMWFSKAAD--KGEPQSMEFLGEIYARG--AG----VERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVE  332 (672)
Q Consensus       263 ~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g--~g----~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~  332 (672)
                      .++|++.++++++  ++++.++...+.++..-  .+    ..+.+++|+.+++++++.  .++.+++.+|.++..-   .
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~---~  121 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL---P  121 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC---S
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh---c
Confidence            4677777777765  45666665555554320  00    022345555555555543  2445555555544420   1


Q ss_pred             cCCHHHHHHHHHHHHhCC--CHHHH-HHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCC
Q 005877          333 KKNYTKAKEYFEKAADNE--EAGGH-YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKN  407 (672)
Q Consensus       333 ~~~~~~A~~~~~~a~~~~--~~~a~-~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~  407 (672)
                      ++++++|+.+++++++.+  +..++ +.+|.++..    .+.+++|+.+++++++.  .+..+++++|.++..    .++
T Consensus       122 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~----~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~----~~~  193 (334)
T d1dcea1         122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQA----AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ----LHP  193 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH----HSC
T ss_pred             cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHh----ccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hcC
Confidence            224555555555554432  33332 334444444    44555555555555442  244555555555544    444


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHh
Q 005877          408 LHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAER  487 (672)
Q Consensus       408 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~  487 (672)
                      +++|+..++++.+..+..  ......+...+..                                               
T Consensus       194 ~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~-----------------------------------------------  224 (334)
T d1dcea1         194 QPDSGPQGRLPENVLLKE--LELVQNAFFTDPN-----------------------------------------------  224 (334)
T ss_dssp             CCCSSSCCSSCHHHHHHH--HHHHHHHHHHCSS-----------------------------------------------
T ss_pred             HHHHHHHHHHhHHhHHHH--HHHHHHHHHhcch-----------------------------------------------
Confidence            444443333333322111  0011111112222                                               


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHH
Q 005877          488 HQCAHSLWWQASEQ--GNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLA  563 (672)
Q Consensus       488 ~~~A~~~~~~a~~~--~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A  563 (672)
                       +++...+.+++..  .+..++..+|.++.    ..+++.+|+..+.++++.  .++.+++.||.+|..    .+++++|
T Consensus       225 -~~a~~~~~~~l~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~eA  295 (334)
T d1dcea1         225 -DQSAWFYHRWLLGRAEPLFRCELSVEKST----VLQSELESCKELQELEPENKWCLLTIILLMRALDP----LLYEKET  295 (334)
T ss_dssp             -CSHHHHHHHHHHSCCCCSSSCCCCHHHHH----HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT----GGGHHHH
T ss_pred             -hHHHHHHHHHHHhCcchhhHHHHHHHHHH----HHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH----CCCHHHH
Confidence             2344444444333  33445556666666    566777777777777654  456667777777765    6677777


Q ss_pred             HHHHHHHHhcCCC
Q 005877          564 KRYYDQALEVDPA  576 (672)
Q Consensus       564 ~~~~~~A~~~~~~  576 (672)
                      +.+|++|++++|+
T Consensus       296 ~~~~~~ai~ldP~  308 (334)
T d1dcea1         296 LQYFSTLKAVDPM  308 (334)
T ss_dssp             HHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHCcc
Confidence            7777777777775

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=3.1e-13  Score=137.32  Aligned_cols=180  Identities=5%  Similarity=-0.157  Sum_probs=112.1

Q ss_pred             hhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCCh--hH-HHHHHHHHHhcCCHHHH
Q 005877          369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SS-LSRWALESYLKGDVGKA  443 (672)
Q Consensus       369 ~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a-~~~lg~~~~~~g~~~~A  443 (672)
                      .+++.+|+.+|+++++.  .+..+++++|.++..-  ...++++|+.+++++++..+.  .+ ....|..+...+++++|
T Consensus        86 ~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A  163 (334)
T d1dcea1          86 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL--PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE  163 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh--ccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence            45566777777777653  3566677777665541  134567777777777776543  23 34456666667777777


Q ss_pred             HHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCC
Q 005877          444 FLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYYGRG  519 (672)
Q Consensus       444 ~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lG~~y~~g~g  519 (672)
                      +.+++++++.  .+..+++++|.++...+.                +++|+..++++.+..  +......+    .    
T Consensus       164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~----------------~~~A~~~~~~~~~~~~~~~~~~~~~----~----  219 (334)
T d1dcea1         164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHP----------------QPDSGPQGRLPENVLLKELELVQNA----F----  219 (334)
T ss_dssp             HHHHHTTTTTTCCCHHHHHHHHHHHHHHSC----------------CCCSSSCCSSCHHHHHHHHHHHHHH----H----
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhcC----------------HHHHHHHHHHhHHhHHHHHHHHHHH----H----
Confidence            7777777544  467777777777776433                111211111111110  11111111    1    


Q ss_pred             CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          520 TQRDYERAAEAYMHARSQ--SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       520 ~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ..+..+++...|.+++..  .++.+...+|.++..    .++..+|+..+.++++.+|...
T Consensus       220 ~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~  276 (334)
T d1dcea1         220 FTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTV----LQSELESCKELQELEPENKWCL  276 (334)
T ss_dssp             HHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHH----HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHH----HhhHHHHHHHHHHHHhhCchHH
Confidence            223455688899998764  567778888988876    7899999999999999998754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=6.3e-12  Score=124.72  Aligned_cols=208  Identities=17%  Similarity=0.139  Sum_probs=137.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCc
Q 005877          297 RNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGV  368 (672)
Q Consensus       297 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~  368 (672)
                      .++++|..+|.++            |.+|..     .+++++|+++|++|++.    ++    +.++.++|.+|..    
T Consensus        31 ~~~~~Aa~~y~~a------------a~~y~~-----~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~----   89 (290)
T d1qqea_          31 YKFEEAADLCVQA------------ATIYRL-----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS----   89 (290)
T ss_dssp             HHHHHHHHHHHHH------------HHHHHH-----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred             ccHHHHHHHHHHH------------HHHHHH-----CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH----
Confidence            3456666666554            444553     34667777777776653    22    3566777888877    


Q ss_pred             hhcHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcC----C----hhHHHHHHH
Q 005877          369 KRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWAL  432 (672)
Q Consensus       369 ~~~~~~A~~~~~~A~~~----~~----~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~lg~  432 (672)
                      .+++++|+.+|+++++.    +.    ..++.++|.+|..   ..+++++|+.+|+++++..    .    ..++.++|.
T Consensus        90 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~  166 (290)
T d1qqea_          90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN---DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD  166 (290)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh---HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Confidence            77888888888887652    22    4566777777754   1478888888888887542    1    224677788


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHH
Q 005877          433 ESYLKGDVGKAFLLYSRMAELGYE--VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLI  510 (672)
Q Consensus       433 ~~~~~g~~~~A~~~~~~a~~~g~~--~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l  510 (672)
                      ++...|++++|+..|++++.....  ....                                         .-...++++
T Consensus       167 ~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~  205 (290)
T d1qqea_         167 LKALDGQYIEASDIYSKLIKSSMGNRLSQW-----------------------------------------SLKDYFLKK  205 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTSSCTTTGG-----------------------------------------GHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHHHHHhCccchhhhh-----------------------------------------hHHHHHHHH
Confidence            888888888888888887664211  0000                                         012234577


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Q 005877          511 GDAYYYGRGTQRDYERAAEAYMHARSQS-------NAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDP  575 (672)
Q Consensus       511 G~~y~~g~g~~~d~~~A~~~~~~A~~~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  575 (672)
                      |.++.    ..+|+..|...++++.+..       ....+..|...+..+  ....+++|+..|+++.+++|
T Consensus       206 ~~~~l----~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~--d~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         206 GLCQL----AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG--DSEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             HHHHH----HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT--CTTTHHHHHHHHTTSSCCCH
T ss_pred             HHHHH----HhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhhcCH
Confidence            88887    7899999999999987652       123456677777653  35569999999988877764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-11  Score=132.44  Aligned_cols=216  Identities=9%  Similarity=-0.057  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHH
Q 005877          265 KALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAK  340 (672)
Q Consensus       265 ~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~~A~  340 (672)
                      +|+++|++|++  ++.+.+++++|.+|..    .+++++|   |++++..+  .+.++...+.++..       .+..++
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~----~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~-------~y~~~i   69 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTS----RQALQDL---YQKMLVTDLEYALDKKVEQDLWNH-------AFKNQI   69 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHH----HHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHH-------HTHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHH----HchHHHH---HHHHHHcChhhHHHHhHHHHHHHH-------HHHHHH
Confidence            57788888764  4667777888888877    7777765   67776543  22333333444421       345666


Q ss_pred             HHHHHHHhCC-----CHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHH
Q 005877          341 EYFEKAADNE-----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATA  413 (672)
Q Consensus       341 ~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~  413 (672)
                      +.+++..+..     .......++.++..    .+.++.++..|+++.+  ..+..++.++|..+..    .++.++|+.
T Consensus        70 e~~r~~~k~~~~~~~~~~~~~~~~~l~~a----~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~----~~~~~~A~~  141 (497)
T d1ya0a1          70 TTLQGQAKNRANPNRSEVQANLSLFLEAA----SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK----QTHTSAIVK  141 (497)
T ss_dssp             HHHHHHHSCSSCTTTTHHHHHHHHHHHHH----HHHHHHHHHHHTC----------------------------------
T ss_pred             HHHHHhcccccCccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh----CCCHHHHHH
Confidence            7777666532     11112223444443    5556666665555543  2344555666666654    566666666


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHH
Q 005877          414 LYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHS  493 (672)
Q Consensus       414 ~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~  493 (672)
                      .+++++...+..++.++|.++...|++++|+.+|++|++.                                        
T Consensus       142 ~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l----------------------------------------  181 (497)
T d1ya0a1         142 PQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL----------------------------------------  181 (497)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------------
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------------------------------------
Confidence            6666665555555556666666666666666666555443                                        


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHc
Q 005877          494 LWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEH  552 (672)
Q Consensus       494 ~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~  552 (672)
                            .|+++.++++||.+|.    ..+|+.+|+.+|.+|+.  ...+.|..||+.++..
T Consensus       182 ------~P~~~~~~~~Lg~~~~----~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         182 ------VPSNGQPYNQLAILAS----SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             ------CTTBSHHHHHHHHHHH----HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             ------CCCchHHHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence                  4566778888999998    78999999999999976  4788999999988764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=4.1e-10  Score=111.30  Aligned_cols=211  Identities=16%  Similarity=0.126  Sum_probs=144.3

Q ss_pred             CChhhHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh----CCCH----HHHHHHHHHHhccC
Q 005877          103 GDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE----GGNI----QSKMAVAYTYLRQD  174 (672)
Q Consensus       103 ~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~----~~~~----~a~~~Lg~~y~~~~  174 (672)
                      ....++++|...|.++            |.+|..    .+++++|+++|++|++    .++.    .++..+|.+|...+
T Consensus        28 ~~~~~~~~Aa~~y~~a------------a~~y~~----~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~   91 (290)
T d1qqea_          28 SDSYKFEEAADLCVQA------------ATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG   91 (290)
T ss_dssp             CSHHHHHHHHHHHHHH------------HHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CccccHHHHHHHHHHH------------HHHHHH----CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence            3456788888887765            667887    8899999999999876    2343    57788899999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005877          175 MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYF  254 (672)
Q Consensus       175 ~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~  254 (672)
                      ++++|+.+|++++++.+.                              .++...            ...++..+|.+|..
T Consensus        92 ~~~~A~~~~~~a~~~~~~------------------------------~~~~~~------------~~~~~~~l~~~~~~  129 (290)
T d1qqea_          92 NSVNAVDSLENAIQIFTH------------------------------RGQFRR------------GANFKFELGEILEN  129 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHH------------------------------TTCHHH------------HHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhhHHhhh------------------------------cccchh------------HHHHHHHHHHhHhh
Confidence            999999999888775432                              111111            24667788888864


Q ss_pred             cCCCcccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C-------HHH
Q 005877          255 GLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L-------YSA  317 (672)
Q Consensus       255 ~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~-------~~a  317 (672)
                      ..    +++++|+++|+++++.    ++    ..++..+|.+|..    .+++++|+.+|++++...  .       ...
T Consensus       130 ~~----~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~----~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  201 (290)
T d1qqea_         130 DL----HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (290)
T ss_dssp             TT----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             HH----HHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH----cChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence            32    4999999999999763    22    4567888999988    899999999999988642  1       133


Q ss_pred             HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC
Q 005877          318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE-------AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG  386 (672)
Q Consensus       318 ~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  386 (672)
                      +..+|.++..     .+++..|...++++.+.+.       ......|...+..+  ....+++|+..|.++.+.+
T Consensus       202 ~~~~~~~~l~-----~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~--d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         202 FLKKGLCQLA-----ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG--DSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             HHHHHHHHHH-----TTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT--CTTTHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHH-----hccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhhcC
Confidence            4566777664     4588888888888876531       12234444555442  1345677777776554443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-12  Score=140.38  Aligned_cols=203  Identities=12%  Similarity=0.065  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHcCCCccCCHHHHHH
Q 005877          338 KAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ--KAFYQLAKMFHTGVGLKKNLHMATA  413 (672)
Q Consensus       338 ~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~--~a~~~L~~~y~~g~g~~~~~~~A~~  413 (672)
                      +|+++|++|++.  +.+++++++|.+|..    .+++++|   |++++..++.  .+....+.+..      ..+..+++
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~----~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~------~~y~~~ie   70 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTS----RQALQDL---YQKMLVTDLEYALDKKVEQDLWN------HAFKNQIT   70 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHH----HHHHHHH---HHHHHHHCHHHHHHHTHHHHHHH------HHTHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHH----HchHHHH---HHHHHHcChhhHHHHhHHHHHHH------HHHHHHHH
Confidence            688899998754  677888888988888    7888876   7787765543  23222232222      23566788


Q ss_pred             HHHHHHHcCC-hh----HHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchH
Q 005877          414 LYKLVAERGP-WS----SLSRWALESYLKGDVGKAFLLYSRMAE--LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAE  486 (672)
Q Consensus       414 ~~~~a~~~~~-~~----a~~~lg~~~~~~g~~~~A~~~~~~a~~--~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~  486 (672)
                      .+++..+... +.    ....++......+.|+.|+..+.++.+  +.+..++.++|..+.+                .+
T Consensus        71 ~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~----------------~~  134 (497)
T d1ya0a1          71 TLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK----------------QT  134 (497)
T ss_dssp             HHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------------
T ss_pred             HHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh----------------CC
Confidence            8887776542 11    122345555566777888888877744  4566777788877766                67


Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHH
Q 005877          487 RHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAK  564 (672)
Q Consensus       487 ~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~  564 (672)
                      +.++|+..+++++......++++||+++.    ..+++++|+.||++|++  ++++.++++||.+|..    .+|..+|+
T Consensus       135 ~~~~A~~~~~~al~~~~~~~~~~LG~l~~----~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~----~~~~~~A~  206 (497)
T d1ya0a1         135 HTSAIVKPQSSSCSYICQHCLVHLGDIAR----YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTI  206 (497)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHH
T ss_pred             CHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH----cCCHHHHH
Confidence            78889988888888877889999999999    78999999999999977  5889999999999987    89999999


Q ss_pred             HHHHHHHhcCCCC
Q 005877          565 RYYDQALEVDPAA  577 (672)
Q Consensus       565 ~~~~~A~~~~~~~  577 (672)
                      .+|.+|+..+|..
T Consensus       207 ~~y~ral~~~~~~  219 (497)
T d1ya0a1         207 FYYCRSIAVKFPF  219 (497)
T ss_dssp             HHHHHHHSSSBCC
T ss_pred             HHHHHHHhCCCCC
Confidence            9999999998764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.6e-10  Score=106.68  Aligned_cols=126  Identities=14%  Similarity=0.110  Sum_probs=87.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCCCHHH
Q 005877          429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQGNEHA  506 (672)
Q Consensus       429 ~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a  506 (672)
                      +.|..+...||+++|+..|.++ ...++.+++|+|.++..                .+++++|+..|++++  ++.++.+
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~~----------------~g~~~~A~~~~~kAl~ldp~~~~a   72 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSAV-QDPHSRICFNIGCMYTI----------------LKNMTEAEKAFTRSINRDKHLAVA   72 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTS-SSCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHH----------------cCCchhHHHHHHHHHHHhhhhhhh
Confidence            3444555555555555555543 22344555555555555                445555555555543  3556888


Q ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--C----------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 005877          507 ALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--S----------------NAQAMFNLGYMHEHGQGLPLDLHLAKRYYD  568 (672)
Q Consensus       507 ~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~----------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  568 (672)
                      ++++|.+|.    ..+++++|+..|++|++.  +                ..++++++|.+|..    .+++++|.+.++
T Consensus        73 ~~~~g~~~~----~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~----~~~~~~A~~~l~  144 (192)
T d1hh8a_          73 YFQRGMLYY----QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLA  144 (192)
T ss_dssp             HHHHHHHHH----HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred             HHHHHHHHH----hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH----CCCHHHHHHHHH
Confidence            888888888    888999999999998752  1                25788999999987    899999999999


Q ss_pred             HHHhcCCCCcc
Q 005877          569 QALEVDPAAKL  579 (672)
Q Consensus       569 ~A~~~~~~~~~  579 (672)
                      +|+++.|+...
T Consensus       145 ~A~~~~~~~~~  155 (192)
T d1hh8a_         145 LATSMKSEPRH  155 (192)
T ss_dssp             HHHTTCCSGGG
T ss_pred             HHHhcCCCcch
Confidence            99999887543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.3e-10  Score=103.70  Aligned_cols=122  Identities=19%  Similarity=0.161  Sum_probs=84.3

Q ss_pred             HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005877          319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAK  396 (672)
Q Consensus       319 ~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~  396 (672)
                      ++.|..+..     .+|+++|++.|.++ ...++.+++++|.+|..    .+++++|+.+|++|++.  .++.+++++|.
T Consensus         9 ~~~g~~~~~-----~~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~~----~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~   78 (192)
T d1hh8a_           9 WNEGVLAAD-----KKDWKGALDAFSAV-QDPHSRICFNIGCMYTI----LKNMTEAEKAFTRSINRDKHLAVAYFQRGM   78 (192)
T ss_dssp             HHHHHHHHH-----TTCHHHHHHHHHTS-SSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHH-----CCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHH----cCCchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            344555553     45777777777653 33456677777777777    67777777777777663  45677777777


Q ss_pred             HHHcCCCccCCHHHHHHHHHHHHHcC------------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          397 MFHTGVGLKKNLHMATALYKLVAERG------------------PWSSLSRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       397 ~y~~g~g~~~~~~~A~~~~~~a~~~~------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                      +|..    .+++++|+..|+++++..                  ....++++|.++...|++++|+..+++|++..
T Consensus        79 ~~~~----~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          79 LYYQ----TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHh----hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            7766    677777777777776531                  13467788988999999999999999887654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=8.8e-09  Score=86.22  Aligned_cols=103  Identities=19%  Similarity=0.091  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHH--hCC
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--EQG  502 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~  502 (672)
                      +...|..++..|++++|+..|.++++.  .++.++.++|.++..                .+++++|+..+++++  .++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~----------------~~~~~~A~~~~~~al~~~p~   69 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----------------KGDYQKAYEDGCKTVDLKPD   69 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------HTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccc----------------cccccccchhhhhHHHhccc
Confidence            445677777777777777777777553  244444444444444                334444444444432  233


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 005877          503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQAMFNLGYM  549 (672)
Q Consensus       503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~a~~~Lg~~  549 (672)
                      ++.+++++|.+|.    ..+++++|+.+|+++++.  +++.++..++.+
T Consensus        70 ~~~~~~~~g~~~~----~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          70 WGKGYSRKAAALE----FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             CHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHH----HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4445555555555    445555555555555442  444444444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=2e-09  Score=99.59  Aligned_cols=99  Identities=14%  Similarity=0.015  Sum_probs=64.9

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC
Q 005877          424 WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN  503 (672)
Q Consensus       424 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~  503 (672)
                      .+.+...|..++..|++++|+.+|++|++..                                              |.+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~----------------------------------------------p~~   37 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN----------------------------------------------PLV   37 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------------------SCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------------------CCC
Confidence            3456677888888888888888888886642                                              444


Q ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005877          504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPA  576 (672)
Q Consensus       504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  576 (672)
                      +.+++++|.+|.    ..+++++|+.+|++|++  ++++.++++||.+|..    .+++++|+.+|++|++++|+
T Consensus        38 ~~~~~~lg~~y~----~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~----l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          38 AVYYTNRALCYL----KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE----MESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHHHHHHHHHHH----HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHh----hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcc
Confidence            555556666666    56666666666666655  3556666666666665    56666666666666665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=8.1e-09  Score=86.91  Aligned_cols=88  Identities=9%  Similarity=0.031  Sum_probs=42.9

Q ss_pred             hHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHcCCCCCC
Q 005877          485 AERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS----NAQAMFNLGYMHEHGQGLPL  558 (672)
Q Consensus       485 ~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~----~~~a~~~Lg~~y~~g~g~~~  558 (672)
                      .+++++|.+.|++++.  +.++++++++|+++.. .+..+|+++|+..|+++++.+    .+.++++||.+|..    .|
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~-s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~----~g   86 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LK   86 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH----TT
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH----Hh
Confidence            4445555555554332  3445555555555541 001234445555555555432    12355555555554    55


Q ss_pred             CHHHHHHHHHHHHhcCCCC
Q 005877          559 DLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       559 d~~~A~~~~~~A~~~~~~~  577 (672)
                      |+++|+++|+++++++|+.
T Consensus        87 ~~~~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          87 EYEKALKYVRGLLQTEPQN  105 (122)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             hhHHHHHHHHHHHHhCcCC
Confidence            5555555555555555554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.4e-08  Score=84.90  Aligned_cols=96  Identities=15%  Similarity=-0.005  Sum_probs=60.4

Q ss_pred             hccCChHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc
Q 005877          221 KSRGEDDEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVE  296 (672)
Q Consensus       221 ~~~g~~~~Ai~~~~~a--a~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~  296 (672)
                      ...|++++|+..|+++  .++.++.++..+|.+|...     +++++|+..|+++++  ++++.+++.+|.+|..    .
T Consensus        14 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~   84 (117)
T d1elwa_          14 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-----GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF----L   84 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----T
T ss_pred             HHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccc-----ccccccchhhhhHHHhccchhhHHHHHHHHHHH----c
Confidence            3333333333333333  2335677777777777766     377777777777765  4567777777777777    7


Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877          297 RNYTKALEWLTHAARQ--QLYSAYNGIGYLY  325 (672)
Q Consensus       297 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y  325 (672)
                      +++++|+..|+++++.  +++.+...++.+.
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            7777777777777754  3666666666553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.7e-09  Score=87.43  Aligned_cols=62  Identities=15%  Similarity=0.108  Sum_probs=42.4

Q ss_pred             hHhHHHHHHHHHHHHhCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 005877          485 AERHQCAHSLWWQASEQGN----EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMH  550 (672)
Q Consensus       485 ~~~~~~A~~~~~~a~~~~~----~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y  550 (672)
                      .+++++|+.++++++..++    .+++++||.+|+    ..|++++|+++|+++++  +++.+|...++.+.
T Consensus        49 ~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~----~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          49 NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY----RLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            5567777777777766543    336677777777    67777777777777755  46677776666654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.9e-08  Score=87.17  Aligned_cols=102  Identities=15%  Similarity=0.016  Sum_probs=61.6

Q ss_pred             HHHHhhcCCcccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcccchh
Q 005877          130 LGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIR  207 (672)
Q Consensus       130 Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~  207 (672)
                      .|..|..    .+++++|+.+|++++.  ++++.+++.+|.+|...|++++|+..|+++++.                  
T Consensus        16 ~gn~~~~----~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------------------   73 (159)
T d1a17a_          16 QANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------------------   73 (159)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred             HHHHHHH----cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH------------------
Confidence            3555555    6666666666666654  566666666666666666666666666666552                  


Q ss_pred             cccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHH
Q 005877          208 IHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFL  285 (672)
Q Consensus       208 l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  285 (672)
                                                    ++.++.+++.+|.++...     +++++|+..|++++..  .++.+...+
T Consensus        74 ------------------------------~p~~~~a~~~~g~~~~~~-----g~~~eA~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          74 ------------------------------DKKYIKGYYRRAASNMAL-----GKFRAALRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             ------------------------------CTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             ------------------------------cccchHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence                                          334556666666666655     3666666666666542  455555555


Q ss_pred             HHH
Q 005877          286 GEI  288 (672)
Q Consensus       286 g~~  288 (672)
                      +.+
T Consensus       119 ~~~  121 (159)
T d1a17a_         119 QEC  121 (159)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5e-08  Score=86.42  Aligned_cols=99  Identities=14%  Similarity=0.080  Sum_probs=51.3

Q ss_pred             HHHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHH
Q 005877          358 LGVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALE  433 (672)
Q Consensus       358 Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~  433 (672)
                      .|..|+.    .+++++|+.+|+++++  +.++.+++++|.+|..    .+++++|+..|+++++..|  +.++..+|.+
T Consensus        16 ~gn~~~~----~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_          16 QANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHH----cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHh----ccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            3445555    5555555555555544  2345555555555555    5555555555555555442  3345555555


Q ss_pred             HHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005877          434 SYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW  464 (672)
Q Consensus       434 ~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~  464 (672)
                      +...|++++|+..|++++..  .++.++..++.
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~  120 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  120 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            55555555555555555433  34444444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.1e-08  Score=94.23  Aligned_cols=98  Identities=13%  Similarity=0.002  Sum_probs=88.8

Q ss_pred             CcCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH--hCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCC
Q 005877           84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN  159 (672)
Q Consensus        84 ~~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~  159 (672)
                      .++.+...|..++.       .|++++|+.+|++++  +|.++.++.++|.+|..    .+++++|+.+|++|++  +++
T Consensus         3 ~a~~l~~~Gn~~~~-------~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~----~~~~~~Ai~~~~~al~l~p~~   71 (201)
T d2c2la1           3 SAQELKEQGNRLFV-------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQS   71 (201)
T ss_dssp             CHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTTC
T ss_pred             hHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh----hhhhhhhhHHHHHHHHhCCCc
Confidence            45567778888775       699999999999954  67999999999999999    9999999999999987  789


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 005877          160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN  192 (672)
Q Consensus       160 ~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~~~~~  192 (672)
                      +.+++.+|.+|...|++++|+..|++++++.|.
T Consensus        72 ~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999999999999999998765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.78  E-value=2.1e-08  Score=83.15  Aligned_cols=92  Identities=15%  Similarity=0.107  Sum_probs=83.1

Q ss_pred             cCchHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHh--CCCH
Q 005877           85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNI  160 (672)
Q Consensus        85 ~~a~~~~a~~~l~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~~~~  160 (672)
                      .+..+..|..++.       .|++++|+..|+++  .+|.++.++..+|.+|..    .+++++|+.+|+++++  +.++
T Consensus        16 ~~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~   84 (112)
T d1hxia_          16 HENPMEEGLSMLK-------LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDI   84 (112)
T ss_dssp             CSCHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHH-------HhhhHHHHHHHhhhcccccccchhhhhhhhhhhh----hhhHHHhhcccccccccccccc
Confidence            3456888998885       58999999999994  566899999999999999    9999999999999987  7999


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005877          161 QSKMAVAYTYLRQDMHDKAVKLYAELA  187 (672)
Q Consensus       161 ~a~~~Lg~~y~~~~~~~~A~~~y~~a~  187 (672)
                      .+++.||.+|...|++++|++++++.+
T Consensus        85 ~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          85 AVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999999999999999999864

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=5.1e-08  Score=82.83  Aligned_cols=109  Identities=21%  Similarity=0.252  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHH
Q 005877          390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWI  465 (672)
Q Consensus       390 a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~  465 (672)
                      .+.++|..+..    .+++++|+.+|+++++.+|  +.++.++|.++...|++++|+..++++++.+  +..++.++|. 
T Consensus         6 ~~k~~G~~~~~----~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~-   80 (128)
T d1elra_           6 KEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK-   80 (128)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH-
T ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH-
Confidence            44567777766    6777777777777777764  4466777777777777777777777776542  3333444443 


Q ss_pred             HHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHH
Q 005877          466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ-SNAQAMF  544 (672)
Q Consensus       466 l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~a~~  544 (672)
                                                              +++++|.++.    ..+++++|+++|++++.. .++..+.
T Consensus        81 ----------------------------------------~~~~lg~~~~----~~~~~~~A~~~~~kal~~~~~~~~~~  116 (128)
T d1elra_          81 ----------------------------------------AYARIGNSYF----KEEKYKDAIHFYNKSLAEHRTPDVLK  116 (128)
T ss_dssp             ----------------------------------------HHHHHHHHHH----HTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             ----------------------------------------HHHHHHHHHH----HhCCHHHHHHHHHHHHhcCCCHHHHH
Confidence                                                    3467888888    789999999999998764 4565554


Q ss_pred             HHH
Q 005877          545 NLG  547 (672)
Q Consensus       545 ~Lg  547 (672)
                      .+.
T Consensus       117 ~l~  119 (128)
T d1elra_         117 KCQ  119 (128)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.75  E-value=2.7e-08  Score=82.44  Aligned_cols=89  Identities=11%  Similarity=0.046  Sum_probs=61.0

Q ss_pred             HHHHHHHHHcCCCchhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHH
Q 005877          355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRW  430 (672)
Q Consensus       355 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l  430 (672)
                      .+++|..+..    .|++++|+..|+++++.  .++.++.++|.++..    .+++++|+.+|+++++..|  +.++..+
T Consensus        19 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~l   90 (112)
T d1hxia_          19 PMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIAVHAAL   90 (112)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHH----HhhhHHHHHHHhhhcccccccchhhhhhhhhhhh----hhhHHHhhcccccccccccccccchHHH
Confidence            4566777766    67777777777777653  356777777777766    6777777777777776664  4566677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHH
Q 005877          431 ALESYLKGDVGKAFLLYSRMA  451 (672)
Q Consensus       431 g~~~~~~g~~~~A~~~~~~a~  451 (672)
                      |.++...|++++|+..+++.+
T Consensus        91 a~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          91 AVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHh
Confidence            777777777777777776653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.4e-08  Score=82.70  Aligned_cols=97  Identities=21%  Similarity=0.261  Sum_probs=78.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHHH
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHA  506 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a  506 (672)
                      +-.+|..++..|+|++|+.+|.++++.                                              .+.++.+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~----------------------------------------------~p~~~~~   40 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKEL----------------------------------------------DPTNMTY   40 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------------------CTTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------------CcccHHH
Confidence            456788888888888888888877764                                              3556778


Q ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 005877          507 ALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SN-------AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAA  577 (672)
Q Consensus       507 ~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~-------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  577 (672)
                      ++++|.+|.    ..+++++|+.++++|++.  .+       +.+++++|.++..    .+++++|+++|++++..+++.
T Consensus        41 ~~~~a~~~~----~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          41 ITNQAAVYF----EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK----EEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             HHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHhHHHHHH----HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCH
Confidence            888999999    889999999999999873  22       3577888888877    899999999999999987764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.1e-07  Score=83.20  Aligned_cols=114  Identities=17%  Similarity=0.184  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHH
Q 005877          426 SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEH  505 (672)
Q Consensus       426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  505 (672)
                      .+...|..++..|++++|+..|+++++.....                     ....  . ........+.       ..
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~---------------------~~~~--~-~~~~~~~~~~-------~~   63 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYE---------------------SSFS--N-EEAQKAQALR-------LA   63 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---------------------CCCC--S-HHHHHHHHHH-------HH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc---------------------cccc--h-HHHhhhchhH-------HH
Confidence            45567889999999999999999998752110                     0000  0 1111111111       23


Q ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          506 AALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       506 a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ++.++|.+|.    ..+++++|+.+++++++  +.++.+++++|.+|..    .|++++|+.+|++|++++|+..
T Consensus        64 ~~~nla~~y~----k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~P~n~  130 (170)
T d1p5qa1          64 SHLNLAMCHL----KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNK  130 (170)
T ss_dssp             HHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHHH----hhhhcccccchhhhhhhccccchhhhHHHHHHHHH----hhhHHHHHHHHHHHHHhCCCCH
Confidence            5678999999    88999999999999977  4789999999999998    8999999999999999998753

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.66  E-value=1.2e-07  Score=84.94  Aligned_cols=112  Identities=16%  Similarity=0.109  Sum_probs=87.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHH--HHhCCCH
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQ--ASEQGNE  504 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--a~~~~~~  504 (672)
                      +...|..++..|++++|+..|.++++.....                                .+......  ...+...
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~--------------------------------~~~~~~~~~~~~~~~~~   77 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS--------------------------------RAAAEDADGAKLQPVAL   77 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------HHHSCHHHHGGGHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh--------------------------------hhhhhhHHHHHhChhhH
Confidence            4567888999999999999999987632100                                00000001  1223346


Q ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          505 HAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       505 ~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      .++.++|.+|.    ..+++++|+.++++|++  ++++.+++++|.+|..    .+++++|++.|++|++++|+..
T Consensus        78 ~~~~nla~~~~----~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~----l~~~~~A~~~~~~al~l~p~n~  145 (169)
T d1ihga1          78 SCVLNIGACKL----KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDK  145 (169)
T ss_dssp             HHHHHHHHHHH----HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHH----hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHH----ccCHHHHHHHHHHHHHhCCCCH
Confidence            67889999999    89999999999999988  4799999999999998    8999999999999999998853

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.2e-07  Score=81.24  Aligned_cols=76  Identities=16%  Similarity=0.085  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005877          389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW  464 (672)
Q Consensus       389 ~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~  464 (672)
                      .++.++|.+|..    .+++++|+.+++++++..|  +.+++++|.+++..|++++|+..|+++++.  +++.+...++.
T Consensus        63 ~~~~nla~~y~k----~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~  138 (170)
T d1p5qa1          63 ASHLNLAMCHLK----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  138 (170)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            456778888887    8899999999999988874  567888999999999999999999998665  57888888887


Q ss_pred             HHHH
Q 005877          465 ILDK  468 (672)
Q Consensus       465 ~l~~  468 (672)
                      +...
T Consensus       139 ~~~~  142 (170)
T d1p5qa1         139 CQQR  142 (170)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7655

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=4e-06  Score=82.57  Aligned_cols=216  Identities=8%  Similarity=-0.001  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHc--------CC--CchhcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcC
Q 005877          337 TKAKEYFEKAADN--EEAGGHYNLGVMYYK--------GI--GVKRDVKLACKYFLVAANA---GHQKAFYQLAKMFHTG  401 (672)
Q Consensus       337 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~--------g~--g~~~~~~~A~~~~~~A~~~---~~~~a~~~L~~~y~~g  401 (672)
                      +.+...|++|+..  .++..++..+.....        |.  ...+..++|...|++|++.   .+...+..++.++.. 
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~-  111 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-
Confidence            4455566666654  456666555543321        00  0145678889999999863   355677778888877 


Q ss_pred             CCccCCHHHHHHHHHHHHHcCChh---HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCccc
Q 005877          402 VGLKKNLHMATALYKLVAERGPWS---SLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCM  476 (672)
Q Consensus       402 ~g~~~~~~~A~~~~~~a~~~~~~~---a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l~~~~~~~~~~  476 (672)
                         .++.++|...|+++++..+..   .+..++......|++++|...|+++++..  ......+.|.+....       
T Consensus       112 ---~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~-------  181 (308)
T d2onda1         112 ---RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC-------  181 (308)
T ss_dssp             ---TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT-------
T ss_pred             ---cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-------
Confidence               889999999999998877533   45566777778889999999999998765  444455555543321       


Q ss_pred             CCCCCCCchHhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--CCHH---HHHHHHHH
Q 005877          477 GESGFCTDAERHQCAHSLWWQASE--QGNEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ--SNAQ---AMFNLGYM  549 (672)
Q Consensus       477 ~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~---a~~~Lg~~  549 (672)
                              .++.+.|..+|+++++  +.++..+..++.+..    ..+|+++|...|++|++.  .++.   .++.--.-
T Consensus       182 --------~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~----~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~  249 (308)
T d2onda1         182 --------SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS----HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA  249 (308)
T ss_dssp             --------SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred             --------ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence                    3467889999998755  567889999999999    889999999999999875  2322   22222222


Q ss_pred             HHcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 005877          550 HEHGQGLPLDLHLAKRYYDQALEVDPAAK  578 (672)
Q Consensus       550 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  578 (672)
                      ++.   .-||.+.+...++++.+.-|+..
T Consensus       250 fE~---~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         250 FES---NIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHH---HHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHH---HcCCHHHHHHHHHHHHHHCcccc
Confidence            332   25899999999999999877653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.58  E-value=4.9e-07  Score=80.68  Aligned_cols=78  Identities=13%  Similarity=-0.006  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 005877          387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNA  462 (672)
Q Consensus       387 ~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nl  462 (672)
                      ...++.++|.+|..    .+++++|+..|.++++..|  +.+++++|.++...|++++|+..|+++++.  ++..+...+
T Consensus        76 ~~~~~~nla~~~~~----~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l  151 (169)
T d1ihga1          76 ALSCVLNIGACKLK----MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHh----hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45677888999988    8999999999999998874  568999999999999999999999999766  577887777


Q ss_pred             HHHHHH
Q 005877          463 AWILDK  468 (672)
Q Consensus       463 a~~l~~  468 (672)
                      +.+..+
T Consensus       152 ~~~~~~  157 (169)
T d1ihga1         152 LKVKQK  157 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.55  E-value=8.4e-07  Score=77.66  Aligned_cols=76  Identities=14%  Similarity=0.070  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005877          389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW  464 (672)
Q Consensus       389 ~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~  464 (672)
                      ..+.++|.+|..    .+++++|+.+++++++.+|  ..+++++|.++...|++++|+..|+++++.  ++..+..++..
T Consensus        68 ~~~~Nla~~~~~----l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~  143 (153)
T d2fbna1          68 SCNLNLATCYNK----NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  143 (153)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHhhHHHHHHH----hcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            466789999988    8999999999999998885  568999999999999999999999999665  57888877777


Q ss_pred             HHHH
Q 005877          465 ILDK  468 (672)
Q Consensus       465 ~l~~  468 (672)
                      +..+
T Consensus       144 ~~~k  147 (153)
T d2fbna1         144 CVNK  147 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.54  E-value=1.3e-06  Score=77.77  Aligned_cols=76  Identities=16%  Similarity=0.087  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 005877          389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW  464 (672)
Q Consensus       389 ~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~  464 (672)
                      ..+.++|.+|..    .+++++|+.+++++++..|  +.+++++|.++...|++++|+..|+++++.  ++..+...++.
T Consensus        65 ~~~~Nla~~~~~----l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          65 AAFLNLAMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM  140 (168)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHhHHHHHHH----hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            456678888887    8888999999998888764  567888888888999999999999998765  47777777777


Q ss_pred             HHHH
Q 005877          465 ILDK  468 (672)
Q Consensus       465 ~l~~  468 (672)
                      +...
T Consensus       141 ~~~~  144 (168)
T d1kt1a1         141 CQKK  144 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.54  E-value=7.8e-07  Score=77.86  Aligned_cols=127  Identities=16%  Similarity=0.164  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCCHH
Q 005877          426 SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEH  505 (672)
Q Consensus       426 a~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  505 (672)
                      .+...|..++..|++.+|+..|.+|++.-..                      .....+.......     ..   ....
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~----------------------~~~~~~~~~~~~~-----~~---~~~~   68 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIH----------------------TEEWDDQILLDKK-----KN---IEIS   68 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT----------------------CTTCCCHHHHHHH-----HH---HHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----------------------hhhhhhHHHHHhh-----hh---HHHH
Confidence            3456788899999999999999999864100                      0000000000000     00   0123


Q ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCc-chhH
Q 005877          506 AALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAK-LPVT  582 (672)
Q Consensus       506 a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~-~~~~  582 (672)
                      .+.++|.+|+    ..+++++|++++++|++  +.+..+++++|.+|..    .|++++|+.+|+++++++|+.. +...
T Consensus        69 ~~~Nla~~~~----~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~n~~~~~~  140 (153)
T d2fbna1          69 CNLNLATCYN----KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNS  140 (153)
T ss_dssp             HHHHHHHHHH----HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHhhHHHHHH----HhcccchhhhhhhccccccchhhhhhHHhHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5679999999    89999999999999977  4789999999999988    8999999999999999999754 3333


Q ss_pred             HHHHHHHH
Q 005877          583 LALTSLWI  590 (672)
Q Consensus       583 ~~~~~~~~  590 (672)
                      +..+...+
T Consensus       141 l~~~~~kl  148 (153)
T d2fbna1         141 YELCVNKL  148 (153)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44443333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=1.8e-05  Score=77.73  Aligned_cols=211  Identities=11%  Similarity=0.055  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCC---------CcccCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcC
Q 005877          227 DEAFQILEYQAQK--GNAGAMYKIGLFYYFGLR---------GLRRDRTKALMWFSKAADK---GEPQSMEFLGEIYARG  292 (672)
Q Consensus       227 ~~Ai~~~~~aa~~--~~~~a~~~Lg~~y~~~~~---------~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g  292 (672)
                      +.++..|+++...  .++..++..+..+...+.         ......++|...|+++++.   .+...+..++.++.. 
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~-  111 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-
Confidence            4567788887554  688888777765532210         0113568899999999863   567778889999998 


Q ss_pred             CCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Q 005877          293 AGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIG  367 (672)
Q Consensus       293 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g  367 (672)
                         .++.++|...|+++++..   ....+..++.+...     .+++++|++.|+++++..  +...+...+.+....  
T Consensus       112 ---~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~-----~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~--  181 (308)
T d2onda1         112 ---RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC--  181 (308)
T ss_dssp             ---TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT--
T ss_pred             ---cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh--
Confidence               899999999999999754   23456677777764     468999999999999864  667777777765432  


Q ss_pred             chhcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hh----HHHHHHHHHHhcCC
Q 005877          368 VKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS----SLSRWALESYLKGD  439 (672)
Q Consensus       368 ~~~~~~~A~~~~~~A~~~--~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~----a~~~lg~~~~~~g~  439 (672)
                       .++.+.|...|+++++.  .++..+...+.+...    .++.++|..+|++++...+  +.    .+......-...|+
T Consensus       182 -~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~----~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~  256 (308)
T d2onda1         182 -SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD  256 (308)
T ss_dssp             -SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred             -ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC
Confidence             57899999999999884  577888888888887    8999999999999998763  22    22223333345699


Q ss_pred             HHHHHHHHHHHHHc
Q 005877          440 VGKAFLLYSRMAEL  453 (672)
Q Consensus       440 ~~~A~~~~~~a~~~  453 (672)
                      .+.+...++++.+.
T Consensus       257 ~~~~~~~~~r~~~~  270 (308)
T d2onda1         257 LASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.7e-07  Score=74.80  Aligned_cols=68  Identities=24%  Similarity=0.270  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc
Q 005877          503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQ---------SNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEV  573 (672)
Q Consensus       503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  573 (672)
                      .++.++.+|.+++    ..+||.+|+.||++|++.         ..+.++++||.+|..    .|++++|+.+|++|+++
T Consensus         4 saddc~~lG~~~~----~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~----~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           4 TAEDSFELGKVAY----TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             CHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh----cCChHHHHHHHHHHHHh
Confidence            3677899999999    899999999999999863         126899999999998    89999999999999999


Q ss_pred             CCCCc
Q 005877          574 DPAAK  578 (672)
Q Consensus       574 ~~~~~  578 (672)
                      +|+..
T Consensus        76 ~P~~~   80 (95)
T d1tjca_          76 DPEHQ   80 (95)
T ss_dssp             CTTCH
T ss_pred             CcCCH
Confidence            99864

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.49  E-value=1.1e-06  Score=78.29  Aligned_cols=128  Identities=18%  Similarity=0.195  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhCCCHHHHHHH
Q 005877          279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNL  358 (672)
Q Consensus       279 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~~~~~a~~~L  358 (672)
                      +..+...|..+..    .+++++|+..|++++..-            ........ ........+       ....+.++
T Consensus        15 a~~~~e~G~~~~~----~~~~~~A~~~Y~~al~~~------------~~~~~~~~-~~~~~~~~~-------~~~~~~Nl   70 (168)
T d1kt1a1          15 AAIVKEKGTVYFK----GGKYVQAVIQYGKIVSWL------------EMEYGLSE-KESKASESF-------LLAAFLNL   70 (168)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHH------------TTCCSCCH-HHHHHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH------------HHhhccch-hhhhhcchh-------HHHHHHhH
Confidence            4556667777777    777777777777776420            00000000 111111111       23456788


Q ss_pred             HHHHHcCCCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHH
Q 005877          359 GVMYYKGIGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALES  434 (672)
Q Consensus       359 g~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~  434 (672)
                      |.+|..    .+++.+|+.+++++++  +++..+++++|.+|..    .+++++|+..|+++++..|  +.+...++.+.
T Consensus        71 a~~~~~----l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~----l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          71 AMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHH----hhhcccchhhhhhhhhcccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            888888    8888888888888877  4578888888888887    8888888888888888774  34455555554


Q ss_pred             HhcC
Q 005877          435 YLKG  438 (672)
Q Consensus       435 ~~~g  438 (672)
                      ...+
T Consensus       143 ~~~~  146 (168)
T d1kt1a1         143 KKAK  146 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.1e-07  Score=71.89  Aligned_cols=73  Identities=22%  Similarity=0.258  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHcCCCccCCHHHHHHHHHHHHHcCC---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHH
Q 005877          390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP---------WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVA  458 (672)
Q Consensus       390 a~~~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a  458 (672)
                      ..+.+|.++..    .+++++|+.||++|++..+         ..++.++|.+++..|++++|+.+|+++++.  +++.+
T Consensus         7 dc~~lG~~~~~----~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           7 DSFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence            34455555544    4555555555555544321         235666777777777777777777777444  57777


Q ss_pred             HHHHHHHH
Q 005877          459 QSNAAWIL  466 (672)
Q Consensus       459 ~~nla~~l  466 (672)
                      ++|++++.
T Consensus        83 ~~Nl~~~~   90 (95)
T d1tjca_          83 NGNLKYFE   90 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.36  E-value=2.1e-06  Score=74.16  Aligned_cols=114  Identities=17%  Similarity=0.163  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcC------CCchhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCC---
Q 005877          336 YTKAKEYFEKAADN--EEAGGHYNLGVMYYKG------IGVKRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGV---  402 (672)
Q Consensus       336 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g------~g~~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~---  402 (672)
                      +++|+..|+++++.  +++++++++|.++..-      ....+.+++|+..|++|++  +.++.+++++|.+|....   
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~   92 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   92 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccch
Confidence            44444444444433  2444444444444320      0012345566666666654  335566666666654310   


Q ss_pred             ----CccCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005877          403 ----GLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELG  454 (672)
Q Consensus       403 ----g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g  454 (672)
                          ...+++++|+.+|+++++..|....+..+..     ...+|...+.++.++|
T Consensus        93 ~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~-----~~~ka~~~~~e~~k~~  143 (145)
T d1zu2a1          93 PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-----MTAKAPQLHAEAYKQG  143 (145)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-----HHHTHHHHHHHHHHSS
T ss_pred             hhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence                0123567888888888888765543332221     1245666666655544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.31  E-value=2.2e-06  Score=74.07  Aligned_cols=98  Identities=4%  Similarity=-0.145  Sum_probs=78.4

Q ss_pred             hhcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCC------CccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcC
Q 005877          369 KRDVKLACKYFLVAAN--AGHQKAFYQLAKMFHTGV------GLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKG  438 (672)
Q Consensus       369 ~~~~~~A~~~~~~A~~--~~~~~a~~~L~~~y~~g~------g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g  438 (672)
                      .+.+++|+..|++|++  ++++++++++|.++..-.      -..+.+++|+..|+++++.+|  +.+++++|.++...|
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence            6789999999999976  668999999999876310      024567899999999999985  678999999998765


Q ss_pred             -----------CHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005877          439 -----------DVGKAFLLYSRMAEL--GYEVAQSNAAWIL  466 (672)
Q Consensus       439 -----------~~~~A~~~~~~a~~~--g~~~a~~nla~~l  466 (672)
                                 ++++|+.+|+++++.  .+..++.+|+...
T Consensus        90 ~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          90 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence                       478999999999655  5777777776553

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.29  E-value=1.9e-06  Score=75.52  Aligned_cols=93  Identities=14%  Similarity=0.009  Sum_probs=66.7

Q ss_pred             HHHHHH--HHHHHcCCCchhcHHHHHHHHHHHHHcC--------------CHHHHHHHHHHHHcCCCccCCHHHHHHHHH
Q 005877          353 GGHYNL--GVMYYKGIGVKRDVKLACKYFLVAANAG--------------HQKAFYQLAKMFHTGVGLKKNLHMATALYK  416 (672)
Q Consensus       353 ~a~~~L--g~~y~~g~g~~~~~~~A~~~~~~A~~~~--------------~~~a~~~L~~~y~~g~g~~~~~~~A~~~~~  416 (672)
                      +++..+  |..++.    .|++++|+..|++|++..              ...++.++|.+|..    .+++++|+..++
T Consensus         8 ~a~~~l~~g~~~~~----~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~----lg~~~~A~~~~~   79 (156)
T d2hr2a1           8 GAYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRSFDEALHSAD   79 (156)
T ss_dssp             HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH----cCccchhhHhhh
Confidence            344444  455555    667777777777776521              13567778888877    788888888888


Q ss_pred             HHHHcCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          417 LVAERGP-------------WSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       417 ~a~~~~~-------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      ++++..+             ..+++++|.++...|++++|+..|++|++.
T Consensus        80 ~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          80 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8775421             225788999999999999999999999875

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.16  E-value=8.7e-06  Score=71.15  Aligned_cols=105  Identities=15%  Similarity=-0.040  Sum_probs=75.7

Q ss_pred             HHHHHH--HHHhhcCCcccCCHHHHHHHHHHHHh--CC------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005877          125 HARSVL--GFLYGMGMMRERNKGKAFLYHHFAAE--GG------------NIQSKMAVAYTYLRQDMHDKAVKLYAELAE  188 (672)
Q Consensus       125 ~a~~~L--g~~y~~G~g~~~d~~~A~~~~~~A~~--~~------------~~~a~~~Lg~~y~~~~~~~~A~~~y~~a~~  188 (672)
                      .++..+  |..+..    .+++++|+..|++|++  +.            ...++.++|.+|...|++++|+..|+++++
T Consensus         8 ~a~~~l~~g~~~~~----~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~   83 (156)
T d2hr2a1           8 GAYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence            344444  556666    7899999999999986  22            136788999999999999999999999988


Q ss_pred             HHHhhhhccCCCCcccchhcccCchhhhhHhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccCHHHHHH
Q 005877          189 IAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALM  268 (672)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~Ai~~~~~aa~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~  268 (672)
                      ..+......+.                                     ..+....+++++|.+|...+     ++++|++
T Consensus        84 ~~~~~~~~~~~-------------------------------------~~~~~~~a~~~~g~~~~~lg-----~~eeA~~  121 (156)
T d2hr2a1          84 YFNRRGELNQD-------------------------------------EGKLWISAVYSRALALDGLG-----RGAEAMP  121 (156)
T ss_dssp             HHHHHCCTTST-------------------------------------HHHHHHHHHHHHHHHHHHTT-----CHHHHHH
T ss_pred             ccccccccccc-------------------------------------ccchhHHHHhhhHHHHHHHH-----HHHHHHH
Confidence            76542211000                                     00112457888899988884     8999999


Q ss_pred             HHHHHHH
Q 005877          269 WFSKAAD  275 (672)
Q Consensus       269 ~~~~a~~  275 (672)
                      +|+++++
T Consensus       122 ~~~~Al~  128 (156)
T d2hr2a1         122 EFKKVVE  128 (156)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999876

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=0.00081  Score=59.50  Aligned_cols=114  Identities=10%  Similarity=-0.142  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCC
Q 005877          425 SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG  502 (672)
Q Consensus       425 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  502 (672)
                      .++...|......|++++|+..|.+|++.  |......+.+                     .--..++     ..++..
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~---------------------~w~~~~r-----~~l~~~   65 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDF---------------------QFVEPFA-----TALVED   65 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTS---------------------TTHHHHH-----HHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcch---------------------HHHHHHH-----HHHHHH
Confidence            45677888899999999999999999875  3221100000                     0000111     112333


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Q 005877          503 NEHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALE  572 (672)
Q Consensus       503 ~~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  572 (672)
                      ...++.+++.++.    ..+++++|+.+++++++  +.+..++.+|+.+|..    .|+..+|++.|+++..
T Consensus        66 ~~~a~~~la~~~~----~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~----~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          66 KVLAHTAKAEAEI----ACGRASAVIAELEALTFEHPYREPLWTQLITAYYL----SDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence            4578889999999    89999999999999976  4789999999999998    8999999999999843

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.33  E-value=0.00016  Score=68.57  Aligned_cols=113  Identities=12%  Similarity=-0.018  Sum_probs=83.3

Q ss_pred             cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCccCCH
Q 005877          333 KKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNL  408 (672)
Q Consensus       333 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L~~~y~~g~g~~~~~  408 (672)
                      .|++++|+..|+++++.  +++.+...||.++..    .|++++|+..|+++++..  +..+...++.++..    .+..
T Consensus         9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~----~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a----~~~~   80 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCI----DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----AQAR   80 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----HHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----cccc
Confidence            56899999999999876  588999999999998    899999999999998754  56777777776654    3444


Q ss_pred             HHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005877          409 HMATALYKLVAERGP---WSSLSRWALESYLKGDVGKAFLLYSRMAEL  453 (672)
Q Consensus       409 ~~A~~~~~~a~~~~~---~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~  453 (672)
                      +++...+.+.....+   +......+..+...|++++|...++++.+.
T Consensus        81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            444333333222222   234556677888899999999999998665

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.00087  Score=54.32  Aligned_cols=73  Identities=12%  Similarity=0.069  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--C-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCcch
Q 005877          504 EHAALLIGDAYYYGRGTQRDYERAAEAYMHARSQS--N-AQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLP  580 (672)
Q Consensus       504 ~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~~~--~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~  580 (672)
                      +.+.|++||++..-. ...|..+|+..++...+.+  + -+++|+||..|.+    .||+++|+++++++++.+|+....
T Consensus        35 ~qt~F~YAw~Lv~S~-~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk----lgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          35 IQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             HHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cchHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHccCCCcHHH
Confidence            556666666665211 2345566666666665432  2 3566777777666    667777777777777777665443


Q ss_pred             h
Q 005877          581 V  581 (672)
Q Consensus       581 ~  581 (672)
                      .
T Consensus       110 ~  110 (124)
T d2pqrb1         110 G  110 (124)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.25  E-value=0.0018  Score=57.23  Aligned_cols=115  Identities=13%  Similarity=0.036  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCchhcHHHHHHHHHHHHHcCCHHHHH
Q 005877          315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFY  392 (672)
Q Consensus       315 ~~a~~~Lg~~y~~g~g~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~  392 (672)
                      ..++...|.....     .|++++|+..|.+|++.  |.....+.           ..+.  +. -....++.....++.
T Consensus        11 f~~~~~~g~~~~~-----~g~~e~A~~~~~~AL~l~rG~~l~~~~-----------~~~w--~~-~~r~~l~~~~~~a~~   71 (179)
T d2ff4a2          11 FVAEKTAGVHAAA-----AGRFEQASRHLSAALREWRGPVLDDLR-----------DFQF--VE-PFATALVEDKVLAHT   71 (179)
T ss_dssp             HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTT--HH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhhCcccccccCc-----------chHH--HH-HHHHHHHHHHHHHHH
Confidence            4567778877775     77999999999999876  22211000           0000  00 001112233467888


Q ss_pred             HHHHHHHcCCCccCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005877          393 QLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE  452 (672)
Q Consensus       393 ~L~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~  452 (672)
                      +++.++..    .+++++|+.+++++++..|  ..++..++.++...|++.+|+..|+++.+
T Consensus        72 ~la~~~~~----~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          72 AKAEAEIA----CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999988    8999999999999999985  56789999999999999999999999843

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.22  E-value=0.00043  Score=65.59  Aligned_cols=62  Identities=19%  Similarity=0.112  Sum_probs=40.0

Q ss_pred             cCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 005877          405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWIL  466 (672)
Q Consensus       405 ~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~g--~~~a~~nla~~l  466 (672)
                      .+++++|+..|+++++..|  ..+...++..+...|++++|+..|+++++..  +..+..+++.++
T Consensus         9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll   74 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV   74 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            5677777777777777764  3456667777777777777777777776543  444444444443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.00078  Score=54.61  Aligned_cols=62  Identities=10%  Similarity=0.050  Sum_probs=50.1

Q ss_pred             chHhHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 005877          484 DAERHQCAHSLWWQASEQGN---EHAALLIGDAYYYGRGTQRDYERAAEAYMHARS--QSNAQAMFNLGYM  549 (672)
Q Consensus       484 ~~~~~~~A~~~~~~a~~~~~---~~a~~~lG~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~a~~~Lg~~  549 (672)
                      ..++.++++.+++.....++   .+.+|.||..|+    ..+||++|.++++++++  ++|.+|..-.-.+
T Consensus        50 ~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy----klgdy~~A~~~~~~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          50 DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY----KLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence            45788999999998766443   578999999999    89999999999999976  5788885544333

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=89.77  E-value=9.9  Score=37.16  Aligned_cols=61  Identities=7%  Similarity=-0.165  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccCCCCCCCchHhHHHHHHHHHHHHhCCC
Q 005877          427 LSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN  503 (672)
Q Consensus       427 ~~~lg~~~~~~g~~~~A~~~~~~a~~~g~~~a~~nla~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~  503 (672)
                      .+..+..++..|....|...+..+++..++.-+..+|.+-.+                .+.++.||....++-.-++
T Consensus       384 ~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~----------------~g~~~~aI~a~~~~~~~d~  444 (450)
T d1qsaa1         384 EMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFN----------------NQWWDLSVQATIAGKLWDH  444 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------CCChhHHHHHHHHHHccCc
Confidence            345566788889999999998888877777777777877666                5667777776666544343

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=81.34  E-value=25  Score=33.96  Aligned_cols=46  Identities=4%  Similarity=-0.184  Sum_probs=37.9

Q ss_pred             cCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005877          405 KKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRM  450 (672)
Q Consensus       405 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  450 (672)
                      .+....|...+..+++..++.-...++....+.|.++.|+....++
T Consensus       394 ~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         394 WNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            5777888888888887777778888899999999999999776665